Query 025578
Match_columns 250
No_of_seqs 186 out of 1325
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 13:10:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025578.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025578hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f6o_A Metacaspase-1; rossmann 100.0 1.2E-45 4.3E-50 334.2 17.5 212 38-249 47-305 (350)
2 4af8_A Metacaspase MCA2; hydro 100.0 2E-44 6.9E-49 327.9 21.5 215 32-249 81-310 (367)
3 3bij_A Uncharacterized protein 100.0 8.8E-39 3E-43 283.8 18.1 192 42-249 1-229 (285)
4 3uoa_B Mucosa-associated lymph 99.9 3.4E-26 1.2E-30 209.6 19.7 169 42-249 3-180 (390)
5 3e4c_A Caspase-1; zymogen, inf 99.8 1.8E-18 6.1E-23 154.2 17.0 208 2-249 32-253 (302)
6 2h54_A Caspase-1; allosteric s 99.7 3.7E-16 1.3E-20 129.2 14.0 149 2-190 15-171 (178)
7 1m72_A Caspase-1; caspase, cys 99.7 1.3E-15 4.6E-20 133.8 15.1 172 43-249 31-210 (272)
8 2nn3_C Caspase-1; cysteine pro 99.6 1.7E-15 5.9E-20 135.2 14.3 172 43-249 59-238 (310)
9 1f1j_A Caspase-7 protease; cas 99.6 3.8E-15 1.3E-19 132.8 15.0 173 43-249 68-249 (305)
10 2j32_A Caspase-3; Pro-caspase3 99.6 2.7E-15 9.3E-20 130.3 13.2 170 43-249 15-193 (250)
11 4ehd_A Caspase-3; caspase, apo 99.6 1.1E-14 3.9E-19 128.2 15.7 171 42-249 42-221 (277)
12 3sir_A Caspase; hydrolase; 2.6 99.6 2E-15 6.9E-20 131.8 10.4 174 43-249 19-200 (259)
13 3od5_A Caspase-6; caspase doma 99.6 3.4E-14 1.2E-18 125.2 15.9 178 42-249 19-211 (278)
14 3h11_B Caspase-8; cell death, 99.6 1.1E-13 3.6E-18 121.6 16.7 179 42-249 15-211 (271)
15 1nw9_B Caspase 9, apoptosis-re 99.5 1.5E-13 5.3E-18 120.9 16.8 186 42-249 19-230 (277)
16 2fp3_A Caspase NC; apoptosis, 99.5 9.4E-14 3.2E-18 124.4 14.7 182 43-249 60-261 (316)
17 1pyo_A Caspase-2; apoptosis, c 99.2 4.4E-10 1.5E-14 91.7 13.7 120 42-190 31-159 (167)
18 2dko_A Caspase-3; low barrier 99.0 5.9E-09 2E-13 83.2 12.8 118 43-190 15-140 (146)
19 1qtn_A Caspase-8; apoptosis, d 98.9 1.4E-08 4.6E-13 82.6 12.6 119 43-190 22-155 (164)
20 3p45_A Caspase-6; protease, hu 98.8 6.5E-08 2.2E-12 79.5 12.9 119 42-190 42-168 (179)
21 3h11_A CAsp8 and FADD-like apo 98.8 2.4E-08 8.3E-13 87.4 10.4 170 42-249 41-221 (272)
22 2ql9_A Caspase-7; cysteine pro 98.8 8.3E-08 2.8E-12 78.5 12.5 118 43-190 43-168 (173)
23 7aat_A Aspartate aminotransfer 62.7 11 0.00036 32.9 5.5 56 62-125 71-129 (401)
24 1x3l_A Hypothetical protein PH 51.8 64 0.0022 29.5 8.8 35 98-132 99-135 (440)
25 3ca8_A Protein YDCF; two domai 45.6 49 0.0017 28.0 6.7 43 65-113 96-138 (266)
26 2b8n_A Glycerate kinase, putat 44.3 46 0.0016 30.4 6.6 77 44-132 49-139 (429)
27 2hd9_A UPF0310 protein PH1033; 42.6 15 0.00051 28.3 2.7 18 112-129 31-48 (145)
28 3ly1_A Putative histidinol-pho 42.4 1.5E+02 0.005 24.7 9.4 57 64-132 49-105 (354)
29 1cvr_A Gingipain R, RGPB; casp 41.8 60 0.0021 29.5 7.1 73 44-133 142-215 (435)
30 2i0x_A Hypothetical protein PF 41.3 84 0.0029 21.6 6.6 52 68-128 14-66 (85)
31 2gbs_A Hypothetical protein RP 38.9 20 0.00068 27.8 2.8 18 111-128 38-55 (145)
32 3uws_A Hypothetical protein; c 37.4 79 0.0027 23.5 6.0 85 45-134 9-117 (126)
33 1zce_A Hypothetical protein AT 37.1 21 0.00073 28.0 2.8 18 111-128 39-56 (155)
34 1zpw_X Hypothetical protein TT 37.0 62 0.0021 22.5 5.1 55 66-129 16-71 (90)
35 2ar1_A Hypothetical protein; s 37.0 24 0.00081 28.2 3.0 20 111-130 54-73 (172)
36 3pzy_A MOG; ssgcid, seattle st 35.8 1.1E+02 0.0038 23.6 6.9 42 69-123 30-71 (164)
37 2eve_A Hypothetical protein ps 35.8 26 0.00089 27.5 3.0 18 111-128 36-53 (157)
38 2p5d_A UPF0310 protein mjecl36 34.6 26 0.00088 27.0 2.9 16 112-128 34-49 (147)
39 3isl_A Purine catabolism prote 33.1 91 0.0031 26.6 6.6 54 66-130 44-97 (416)
40 3n0l_A Serine hydroxymethyltra 32.0 1.4E+02 0.0048 25.5 7.7 48 71-131 76-123 (417)
41 3kbq_A Protein TA0487; structu 31.4 1.2E+02 0.0039 23.9 6.3 55 66-134 23-77 (172)
42 3eop_A Thymocyte nuclear prote 29.8 37 0.0013 27.1 3.0 16 114-129 50-65 (176)
43 3rq1_A Aminotransferase class 29.5 1.6E+02 0.0056 25.2 7.7 56 63-130 81-137 (418)
44 2c0r_A PSAT, phosphoserine ami 28.1 1.2E+02 0.0041 25.4 6.5 48 67-125 50-98 (362)
45 3euc_A Histidinol-phosphate am 28.1 2.6E+02 0.0089 23.3 8.8 53 68-132 69-122 (367)
46 2zc0_A Alanine glyoxylate tran 27.3 1.5E+02 0.0053 25.2 7.1 55 64-130 77-133 (407)
47 4es1_A BH0342 protein; ferredo 27.0 1.1E+02 0.0039 21.8 5.1 57 67-132 23-80 (100)
48 3rhz_A GTF3, nucleotide sugar 26.9 1.1E+02 0.0039 26.4 6.1 58 64-127 26-83 (339)
49 3oq2_A Crispr-associated prote 26.6 1.1E+02 0.0037 21.9 5.0 55 66-130 25-81 (103)
50 3ijw_A Aminoglycoside N3-acety 26.1 73 0.0025 27.1 4.5 26 100-127 15-40 (268)
51 1svv_A Threonine aldolase; str 25.6 2.4E+02 0.0082 23.1 7.9 56 65-132 48-103 (359)
52 1o4s_A Aspartate aminotransfer 25.5 1.8E+02 0.0063 24.7 7.3 57 63-131 79-137 (389)
53 4hvk_A Probable cysteine desul 24.5 84 0.0029 26.3 4.7 51 66-125 43-94 (382)
54 3op7_A Aminotransferase class 24.3 2E+02 0.007 24.0 7.3 51 69-131 66-117 (375)
55 1j32_A Aspartate aminotransfer 24.0 1.9E+02 0.0064 24.5 6.9 56 63-130 68-125 (388)
56 1xho_A Chorismate mutase; sout 23.8 78 0.0027 24.4 3.8 28 101-128 45-78 (148)
57 1rv3_A Serine hydroxymethyltra 23.7 3.9E+02 0.013 23.8 9.6 52 70-132 94-147 (483)
58 3rfq_A Pterin-4-alpha-carbinol 22.7 1.5E+02 0.0051 23.5 5.5 52 68-132 51-102 (185)
59 3nnk_A Ureidoglycine-glyoxylat 22.1 1.8E+02 0.0061 24.6 6.5 52 67-129 47-98 (411)
60 1dbf_A Protein (chorismate mut 22.0 92 0.0031 23.5 3.8 29 101-129 16-50 (127)
61 1y5e_A Molybdenum cofactor bio 21.9 1.7E+02 0.0059 22.4 5.7 56 66-133 31-86 (169)
62 2nyg_A YOKD protein; PFAM02522 21.8 82 0.0028 26.8 4.0 26 100-127 13-38 (273)
63 3sma_A FRBF; N-acetyl transfer 21.7 83 0.0028 27.0 4.0 27 99-127 21-47 (286)
64 2gm5_A Transposon gamma-delta 21.7 1.3E+02 0.0043 22.3 4.7 50 67-125 14-63 (139)
65 1o58_A O-acetylserine sulfhydr 21.1 2.2E+02 0.0075 23.9 6.7 32 103-134 269-300 (303)
66 3f9t_A TDC, L-tyrosine decarbo 20.6 2.2E+02 0.0075 23.7 6.7 58 66-132 69-136 (397)
67 1di6_A MOGA, molybdenum cofact 20.5 2.5E+02 0.0085 22.3 6.5 52 70-133 27-80 (195)
68 1ve1_A O-acetylserine sulfhydr 20.2 2.4E+02 0.0083 23.5 6.8 34 101-135 264-297 (304)
69 3sho_A Transcriptional regulat 20.1 2.8E+02 0.0097 20.8 9.9 60 45-131 40-99 (187)
70 3ezs_A Aminotransferase ASPB; 20.1 2.7E+02 0.0094 23.2 7.2 58 62-131 59-120 (376)
No 1
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-45 Score=334.22 Aligned_cols=212 Identities=36% Similarity=0.661 Sum_probs=158.6
Q ss_pred CCCCCCCeEEEEEeecCCCCCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCC
Q 025578 38 SSSSRPSRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCR 117 (250)
Q Consensus 38 ~~~~~~~~~ALlIGi~Y~~~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~ 117 (250)
.+++.++++||+|||||++...+|++|+|||++|+++|++.+||++++|++|+|.+.++...||+++|+++|+||+++++
T Consensus 47 ~s~~~grr~ALlIGIn~Y~~~~~L~g~vnDA~~m~~~L~~~~Gf~~~~I~lLtd~~~~~~~~pTr~nI~~aL~~L~~~a~ 126 (350)
T 4f6o_A 47 YSQCTGRRKALIIGINYIGSKNQLRGCINDAHNIFNFLTNGYGYSSDDIVILTDDQNDLVRVPTRANMIRAMQWLVKDAQ 126 (350)
T ss_dssp CCCCCSCEEEEEEECCCTTSTTCCSSHHHHHHHHHHHHHHHSCCCGGGEEEEETTSSCGGGSCCHHHHHHHHHHHHTTCC
T ss_pred cCCCCCCEEEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCccceeeecccccccccCCCHHHHHHHHHHHHHhCC
Confidence 35567899999999998877889999999999999999988999999999999986545556899999999999999999
Q ss_pred CCCEEEEEEecCCcccCCCCCCCCCCceeeEEccCCCCCCcchHHHHHHHHHhcccCCCeEEEEEeCCCCCCCCCchhhh
Q 025578 118 KGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYVY 197 (250)
Q Consensus 118 ~~D~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~~~~i~~~~L~~~L~~~l~~~~~v~~ilD~C~SG~~~~~~~~~ 197 (250)
++|++||||||||.+..+..|+|.+|+|++|+|+|+...+.|.++||.++|.+.+++++++++|+||||||++++.++.+
T Consensus 127 pgD~llfYFSGHG~q~~d~~gdE~dG~De~lvP~D~~~~g~I~ddeL~~~L~~~l~~g~~vt~IlD~ChSGt~ldlp~~~ 206 (350)
T 4f6o_A 127 PNDSLFLHYSGHGGQTEDLDGDEEDGMDDVIYPVDFETQGPIIDDEMHDIMVKPLQQGVRLTALFDSCHSGTVLDLPYTY 206 (350)
T ss_dssp TTCEEEEEEESCEEEC-----------CEEECCTTHHHHCCEEHHHHHHHHTTTCCTTCEEEEEECSSSCTTTTCCSEEE
T ss_pred CCCEEEEEEcCCceeccCCCCCcccCCceEEEeccCCcCCcccHHHHHHHHHhhcCCCCeEEEEEccCCCCccccccccc
Confidence 99999999999999998888888999999999999887788999999999988888899999999999999999988765
Q ss_pred ccccc-----ccccCCC--------------------CCc------------------ccccCCCCCEEEEeeeCCCCee
Q 025578 198 NKYQM-----TWEDNRP--------------------PSG------------------ARKATDGGLAICLSACQDNQLA 234 (250)
Q Consensus 198 ~~~~~-----~~~~~~~--------------------~~~------------------~~~~~~~g~~v~lsAc~~~Q~A 234 (250)
+..+. .|..... ..+ .....+++.+|+||+|+++|+|
T Consensus 207 ~~~g~~~e~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SgCkD~QtS 286 (350)
T 4f6o_A 207 STKGIIKEPNIWKDVGQDGLQAAISYATGNRAALIGSLGSIFKTVKGGMGNNVDRERVRQIKFSAADVVMLSGSKDNQTS 286 (350)
T ss_dssp ETTEEEECCCC---------------------------------------------------CCCSEEEEEEEEC-----
T ss_pred ccccccCcchhhhhccccccchhhhhccccchhhcccchhhhhhhccccccccchhhhhhccCCCCCEEEEEecCCCCch
Confidence 43221 1111000 000 0012446789999999999999
Q ss_pred eccC----CCchhhhhhhh
Q 025578 235 SDTS----VRFFFFDYIFI 249 (250)
Q Consensus 235 ~E~~----~~G~FT~aL~~ 249 (250)
.|.. .+|.||++|++
T Consensus 287 aD~~~~g~~~GAmTyafi~ 305 (350)
T 4f6o_A 287 ADAVEDGQNTGAMSHAFIK 305 (350)
T ss_dssp --------CCCHHHHHHHH
T ss_pred hhhccCCceeehhHHHHHH
Confidence 9976 25999999985
No 2
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A
Probab=100.00 E-value=2e-44 Score=327.90 Aligned_cols=215 Identities=30% Similarity=0.501 Sum_probs=170.5
Q ss_pred CCCCCCCCCCCCCeEEEEEeecCCCCCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCcc--CCCCcccHHHHHHHH
Q 025578 32 KPFSLSSSSSRPSRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEK--DEMYSPTKKNIQKAL 109 (250)
Q Consensus 32 ~~~~~~~~~~~~~~~ALlIGi~Y~~~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a--~~~~~pT~~~I~~~l 109 (250)
.|.+.| +.+.+++|||+||||||+...+|+||+|||++|+++|+ .+||+.++|++|+|++. +....||+++|+++|
T Consensus 81 ~p~~~~-~~~~grr~ALlIGIn~Y~~~~~L~g~vnDA~~m~~~L~-~~GF~~~~i~~L~D~~~~p~~~~~pTr~nI~~aL 158 (367)
T 4af8_A 81 QPWVAT-PLPGQTVRALFIGINYYGTSAALSGCCNDVKQMLATLQ-KRGLPINEAVILVDEDNFPGRTDQPTRDNIVRYM 158 (367)
T ss_dssp CCSCCC-CCTTCCEEEEEEECCCTTSTTCCSSHHHHHHHHHHHHH-HTTCCCSEEEEEECCTTCTTCCBCCCHHHHHHHH
T ss_pred CCCCCC-CCCCCCeEEEEEEeCCCCCccCCCCHHHHHHHHHHHHH-HcCCCchheEEecccccccccccCCCHHHHHHHH
Confidence 455555 46689999999999987777899999999999999997 58999999999998642 123468999999999
Q ss_pred HHHHHhCCCCCEEEEEEecCCcccCCCCCCCCCCceeeEEccCCCCCCcchHHHHHHHHHhcccCCCeEEEEEeCCCCCC
Q 025578 110 EWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGT 189 (250)
Q Consensus 110 ~~l~~~~~~~D~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~~~~i~~~~L~~~L~~~l~~~~~v~~ilD~C~SG~ 189 (250)
+||+++++++|.+||||||||.+.++. +++.+|+|++|+|+|+..++.|.++||.++|.+.+++++++++|+||||||+
T Consensus 159 ~~L~~~a~pgD~l~fyFSGHG~q~~d~-~de~dg~De~LvP~D~~~~g~I~ddeL~~lLv~~l~~g~~v~vIlD~ChSGt 237 (367)
T 4af8_A 159 AWLVKDAKPGDVLFFHYSGHGTQCKSR-GDSDEKYDQCIAPVDFQKSGCIVDDDIHKLLFSRLPEKVRLTAVFDCGHSGS 237 (367)
T ss_dssp HHHHHTCCTTCEEEEEEESCEEEECCC------CCEEEECCTTHHHHCCEEHHHHHHHHTTTCCTTCEEEEEEECTTCCC
T ss_pred HHHHHhCCCCCEEEEEEcCCcCccCCC-CCCCCCcceEEEeecCCcCCCccHHHHHHHHHHhccCCCEEEEEEeCCCCCc
Confidence 999999999999999999999998874 4677899999999998877889999999997788888899999999999999
Q ss_pred CCCchhhhcccccccccCCCC-Ccccc-cCCCCCEEEEeeeCCCCeeeccC-----------CCchhhhhhhh
Q 025578 190 ILDLEYVYNKYQMTWEDNRPP-SGARK-ATDGGLAICLSACQDNQLASDTS-----------VRFFFFDYIFI 249 (250)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~g~~v~lsAc~~~Q~A~E~~-----------~~G~FT~aL~~ 249 (250)
+.+.++.++..+.......+. ...++ ..+++.+|+||||+++|+|.|.. .+|+||++|++
T Consensus 238 ~~dlp~~~~~r~~~~~~~~~~~~~~~~~~~~~~~vi~~Sac~d~QtSad~~~~~~f~~g~~~~~GafTyali~ 310 (367)
T 4af8_A 238 IMDLPFTYVCSGGEQASGTPHMKRIREGNDVLGDVMMISGCADEQTSADVKNTATFGTGSTGAGGAATQCITC 310 (367)
T ss_dssp CTTCSEEEECCTTCCTTSCCCCEECSSCCCCCSEEEEEEEECCCSCCCCCC-------CCCBCBSHHHHHHHH
T ss_pred ccccccccccccccccccchhhhhhccCCCCCCCEEEEEecCCCCchhhhhccccccccccCcccHHHHHHHH
Confidence 999887544322110000000 11111 24567788999999999999964 35999999985
No 3
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}
Probab=100.00 E-value=8.8e-39 Score=283.76 Aligned_cols=192 Identities=27% Similarity=0.419 Sum_probs=150.2
Q ss_pred CCCeEEEEEeec-CC-----CCCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHh
Q 025578 42 RPSRRAVLCGVS-YN-----KGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVND 115 (250)
Q Consensus 42 ~~~~~ALlIGi~-Y~-----~~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~ 115 (250)
|++++||+|||| |. +...+|++|++||.+|+++|+ .+||+ |++|.|.+ ||+++|+++|++++++
T Consensus 1 m~~~~ALlIGi~~Y~~~~Y~~~~~~L~~~~nDa~~~~~~L~-~~Gf~---v~~l~~~~------~t~~~i~~al~~l~~~ 70 (285)
T 3bij_A 1 MPKGIALALGLNAVDPKHYGGWAGKLNACEADAEDMAAIAA-ERGFA---VTTLMTKA------ATRAKVIDAIGKAAKA 70 (285)
T ss_dssp -CCEEEEEEECSCCCTTTTTTCCCCCSSHHHHHHHHHHHHH-HTTCE---EEEEEGGG------CCHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEeCCccccccCCCcccCCCCHHHHHHHHHHHH-HcCCc---eEEecCCc------cCHHHHHHHHHHHHHh
Confidence 578999999999 53 235799999999999999996 68997 67777765 5999999999999999
Q ss_pred CCCCCEEEEEEecCCcccCCCCCCCCCCceeeEEccCCCCCCcchHHHHHHHHHhcccCCCeEEEEEeCCCCCCCCC-ch
Q 025578 116 CRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILD-LE 194 (250)
Q Consensus 116 ~~~~D~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~~~~i~~~~L~~~L~~~l~~~~~v~~ilD~C~SG~~~~-~~ 194 (250)
++|+|++||||||||.+..+..|+|.+|++++|+|+|. .|.+++|.++| +.+++++++++||||||||++.+ .+
T Consensus 71 ~~~~D~~~~yfSGHG~~~~~~~g~e~dg~~~~l~p~D~----~i~~~~l~~~l-~~l~~~~~~~vilD~C~SG~~~~~~p 145 (285)
T 3bij_A 71 LGKGDIFMLSYSGHGGQVPDTSNDEPDGVDETWCLFDG----ELIDDELYALL-GKFAAGVRVLVFSDSCHSGTVVKMAY 145 (285)
T ss_dssp CCTTCEEEEEEESCEEEEECTTSCCTTCEEEEEECSSS----EEEHHHHHHHH-TTSCSSCEEEEEEECCCCCCHHHHHH
T ss_pred CCCCCEEEEEEcCCcccccCCCCCccCCCcceEEecCC----CccHHHHHHHH-HhccCCCeEEEEEecCCCCccccccc
Confidence 99999999999999999877778888999999999994 47888999988 56766789999999999999987 34
Q ss_pred hhhccc---------ccccccCCCCCc--------------c-------cccCCCCCEEEEeeeCCCCeeeccCCCchhh
Q 025578 195 YVYNKY---------QMTWEDNRPPSG--------------A-------RKATDGGLAICLSACQDNQLASDTSVRFFFF 244 (250)
Q Consensus 195 ~~~~~~---------~~~~~~~~~~~~--------------~-------~~~~~~g~~v~lsAc~~~Q~A~E~~~~G~FT 244 (250)
+..... ...... .++.. . .....++.+++|+||+++|+|+|..++|+||
T Consensus 146 ~~~~~~~~~~~~~~g~~~~r~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~lsa~~~~q~A~e~~~~G~FT 224 (285)
T 3bij_A 146 YNGTTAARSAGPDEGEIRYRA-MPQSVAMRTYRANREFYDTIQQKTKKVDLADVKASILLISGCQDNQLSQDGAFNGAFT 224 (285)
T ss_dssp TTC-------------CEESB-CCHHHHHHHHHHTHHHHHHHHHHCCCCCTTTCSSEEEEEESSCTTSCCEECSSSCHHH
T ss_pred cccccccccccccccccceee-cCchhhhhhhhcchhHHHHHhhhcccccccCCCCCEEEEEeCCCCccccccccCCHHH
Confidence 321000 000000 00000 0 0122345578899999999999999999999
Q ss_pred hhhhh
Q 025578 245 DYIFI 249 (250)
Q Consensus 245 ~aL~~ 249 (250)
+||+.
T Consensus 225 ~aLl~ 229 (285)
T 3bij_A 225 GQLLR 229 (285)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99974
No 4
>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*
Probab=99.94 E-value=3.4e-26 Score=209.56 Aligned_cols=169 Identities=19% Similarity=0.255 Sum_probs=131.2
Q ss_pred CCCeEEEEEeec-CCCCCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCC
Q 025578 42 RPSRRAVLCGVS-YNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGD 120 (250)
Q Consensus 42 ~~~~~ALlIGi~-Y~~~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D 120 (250)
.++++||+|||+ |.. .++|+|+.+||++|+++|+ .+||+ |.++.| +|+++|+++|+++.++++++|
T Consensus 3 A~~r~ALIIGn~~Y~~-~~~L~ga~~DA~~L~~~L~-~lGF~---V~~l~D--------lT~~eI~~aL~~f~~~~~~~D 69 (390)
T 3uoa_B 3 AKDKVALLIGNMNYRE-HPKLKAPLVDVYELTNLLR-QLDFK---VVSLLD--------LTEYEMRNAVDEFLLLLDKGV 69 (390)
T ss_dssp BSCEEEEEEECCCCSS-SCCCSTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHHTCCTTC
T ss_pred CCCCEEEEEEecCCCC-cccCCChHHHHHHHHHHHH-HcCCe---EEEeec--------CCHHHHHHHHHHHHhhCCCCC
Confidence 468999999999 554 6789999999999999998 59997 677777 499999999999999999999
Q ss_pred EEEEEEecCCcccCCCCCCCCCCceeeEEccCCCC----CCcchHHHHHHHHHhcccCCCeEEEEEeCCCCCCCCCchhh
Q 025578 121 SLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLK----EGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYV 196 (250)
Q Consensus 121 ~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~----~~~i~~~~L~~~L~~~l~~~~~v~~ilD~C~SG~~~~~~~~ 196 (250)
.++|||||||.+..+ ..||+|.|... ...++.++|.+.+.+ + .+...++|||||+++...+...
T Consensus 70 ~~l~yfsGHG~~~~g---------~~yL~p~Da~~~~~~~~~isl~~Ll~~l~~-~-~~K~kL~ILDACrg~~~~~~~~- 137 (390)
T 3uoa_B 70 YGLLYYAGHGYENFG---------NSFMVPVDAPNPYRSENCLCVQNILKLMQE-K-ETGLNVFLLDMCRKRNDYDDTI- 137 (390)
T ss_dssp EEEEEEESCEEEETT---------EEEECCTTCCSSCCGGGSEEHHHHHHHHHH-T-TCSEEEEEEESCCCCCTTCCCC-
T ss_pred EEEEEEecCccccCC---------cceEEecCCCccccccceeeHHHHHHHHHh-c-CCCceEEEEECCCCCCcccccc-
Confidence 999999999988642 24899999863 245788888888753 3 3446689999999964432110
Q ss_pred hcccccccccCCCCCcccccCCCCCEEEEeeeCCCCeeeccC----CCchhhhhhhh
Q 025578 197 YNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTS----VRFFFFDYIFI 249 (250)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~g~~v~lsAc~~~Q~A~E~~----~~G~FT~aL~~ 249 (250)
.+ ..........+++.||.++++|||.. .+|+||++|+.
T Consensus 138 ----~~----------~~~ip~~ad~Li~yAT~pG~~A~r~~~d~~~gS~FtqaL~e 180 (390)
T 3uoa_B 138 ----PI----------LDALKVTANIVFGYATCQGAEAFEIQHSGLANGIFMKFLKD 180 (390)
T ss_dssp ----CC----------CCCCCCCSCEEEEESSCTTCCCEECSSCTTCCCHHHHHHTT
T ss_pred ----cc----------cccCcccCCcEEEEEcCCCcEeeecCCCCCCCCHHHHHHHH
Confidence 00 01111234467789999999999964 57999999974
No 5
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=99.79 E-value=1.8e-18 Score=154.22 Aligned_cols=208 Identities=17% Similarity=0.178 Sum_probs=147.8
Q ss_pred ccccCCCccchhhhhhhhcccCCCcCCCCCCCCCCCCCCCCCCeEEEEEeecCCCCCCCCcCcHHHHHHHHHHHHhhcCC
Q 025578 2 QICPRGNFGCNIMKKIRNDEISPNKRSLNTKPFSLSSSSSRPSRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKF 81 (250)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ALlIGi~Y~~~~~~L~~a~~Da~~~~~~L~~~~G~ 81 (250)
.-||+|.|..- ++.|..++||. ...+.+++.|||||+..+....++.|+.+|++.|+++|+ .+||
T Consensus 32 ~~c~~~~~~~~--~~~~~~e~Y~m------------~~~~~~~r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~-~LGF 96 (302)
T 3e4c_A 32 KLCSLEEAQRI--WKQKSAEIYPI------------MDKSSRTRLALIICNEEFDSIPRRTGAEVDITGMTMLLQ-NLGY 96 (302)
T ss_dssp CCCCHHHHHHH--HHHHGGGBCCC------------CCTTTCCCEEEEEECCSCSSSCCCTTHHHHHHHHHHHHH-HTTC
T ss_pred ccCCHHHHHHH--HHhcccccccc------------CCCCCCccEEEEEECcCCCCCCCCCCcHHHHHHHHHHHH-HCCC
Confidence 46999999877 88999999998 666667899999999933447899999999999999997 6999
Q ss_pred CcccEEEecCCccCCCCcccHHHHHHHHHHHHH--hCCCCCEEEEEEecCCcccCCCCCCCCCCceeeEEccCCCC--CC
Q 025578 82 QEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVN--DCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLK--EG 157 (250)
Q Consensus 82 ~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~--~~~~~D~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~--~~ 157 (250)
. |.+..| .|+++|.++|+++.+ .....|.+++||+|||.+. ++++.|... ..
T Consensus 97 ~---V~~~~d--------lt~~em~~~l~~f~~~~dh~~~d~~vv~~lsHG~~~-------------~i~g~D~~~~~~~ 152 (302)
T 3e4c_A 97 S---VDVKKN--------LTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIRE-------------GICGKKHSEQVPD 152 (302)
T ss_dssp E---EEEEES--------CCHHHHHHHHHHHHTCGGGGGCSCEEEEEEEEEETT-------------EEECTTCCSSSCC
T ss_pred E---EEEeeC--------CCHHHHHHHHHHHHhhhccCCCCEEEEEEeccCcCC-------------eEEeecccccCCc
Confidence 8 677777 499999999999975 3456899999999999874 366776521 23
Q ss_pred cchHHHHHHHHHhc----ccCCCeEEEEEeCCCCCCCCCchhhhccc-ccc-c-ccC--CCCCcccccCCCCCEEEEeee
Q 025578 158 MIIDNDINSIIVKP----LKEGVTLHAIVDACHSGTILDLEYVYNKY-QMT-W-EDN--RPPSGARKATDGGLAICLSAC 228 (250)
Q Consensus 158 ~i~~~~L~~~L~~~----l~~~~~v~~ilD~C~SG~~~~~~~~~~~~-~~~-~-~~~--~~~~~~~~~~~~g~~v~lsAc 228 (250)
.+..++|.+.+... +....| ++|+|||+.............. .+. . ... ...++..+...+...++..|+
T Consensus 153 ~v~l~~I~~~F~~~~CpsL~gKPK-lffIQACRG~~~~~~~~~ds~~~~~~~~~~~~~~~~~d~~~~ip~~aDfLi~yST 231 (302)
T 3e4c_A 153 ILQLNAIFNMLNTKNCPSLKDKPK-VIIIQAARGDSPGVVWFKDSVGVSGNLSLPTTEEFEDDAIKKAHIEKDFIAFCSS 231 (302)
T ss_dssp EECHHHHHHHTSTTTCGGGTTSCE-EEEEEEECSSSCCCCCCCCC--------CCCCCCCCCHHHHTSCSSCSEEEEEEC
T ss_pred EEEHHHHHHHHhhhcchhhcCCcc-EEEEECCCCCCCCcceeccCcccccccccccccccccccccccCCCCCEEEEEeC
Confidence 57778888877431 223345 6999999987653211000000 000 0 000 000111223345567888899
Q ss_pred CCCCeeeccCC-Cchhhhhhhh
Q 025578 229 QDNQLASDTSV-RFFFFDYIFI 249 (250)
Q Consensus 229 ~~~Q~A~E~~~-~G~FT~aL~~ 249 (250)
.++.+||...+ ++.|+++|..
T Consensus 232 ~pG~vS~R~~~~GSwFIqaL~~ 253 (302)
T 3e4c_A 232 TPDNVSWRHPTMGSVFIGRLIE 253 (302)
T ss_dssp CCCCCCSSSTTCCCHHHHHHHH
T ss_pred CCCceeecCCCCCcHHHHHHHH
Confidence 99999999875 6899999964
No 6
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=99.69 E-value=3.7e-16 Score=129.18 Aligned_cols=149 Identities=22% Similarity=0.305 Sum_probs=108.8
Q ss_pred ccccCCCccchhhhhhhhcccCCCcCCCCCCCCCCCCCCCCCCeEEEEEeecCCCCCCCCcCcHHHHHHHHHHHHhhcCC
Q 025578 2 QICPRGNFGCNIMKKIRNDEISPNKRSLNTKPFSLSSSSSRPSRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKF 81 (250)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ALlIGi~Y~~~~~~L~~a~~Da~~~~~~L~~~~G~ 81 (250)
..||.+.|.. |+..|..++||- ...+.++++|||||+..+....++.|+.+|++.|+++|+ .+||
T Consensus 15 ~~c~~~~~~~--~~~~~~~~~Y~m------------~~~~~~~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~-~LgF 79 (178)
T 2h54_A 15 KLCSLEEAQR--IWKQKSAEIYPI------------MDKSSRTRLALIICNEEFDSIPRRTGAEVDITGMTMLLQ-NLGY 79 (178)
T ss_dssp CCCCHHHHHH--HC---CCSBCCC------------CCTTTCCCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHH-HTTC
T ss_pred eeCCHHHhhh--ccccCcccccCC------------CCCCCcCCEEEEEehhhcCCCccCCCCHHHHHHHHHHHH-HCCC
Confidence 4588877754 356677888887 333446789999999933447899999999999999997 6999
Q ss_pred CcccEEEecCCccCCCCcccHHHHHHHHHHHHHh--CCCCCEEEEEEecCCcccCCCCCCCCCCceeeEEccCCC--CCC
Q 025578 82 QEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVND--CRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFL--KEG 157 (250)
Q Consensus 82 ~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~--~~~~D~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~--~~~ 157 (250)
. |.+..| .|+++|.++|+++.++ .+..|.+++||.|||... ++.+.|.. ...
T Consensus 80 ~---V~~~~d--------lt~~em~~~l~~f~~~~d~~~~d~~v~~~lsHG~~g-------------~i~g~D~~~~~~~ 135 (178)
T 2h54_A 80 S---VDVKKN--------LTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIRE-------------GICGKKHSEQVPD 135 (178)
T ss_dssp E---EEEEES--------CCHHHHHHHHHHHHTCGGGGGCSCEEEEEESCBCSS-------------CEECTTCCSSSCC
T ss_pred E---EEEecC--------CCHHHHHHHHHHHHhhhhcCCCCEEEEEEecCCCCC-------------eEEeecCCcccCc
Confidence 8 677777 4999999999999753 467899999999999873 36666652 112
Q ss_pred cchHHHHHHHHHhc----ccCCCeEEEEEeCCCCCCC
Q 025578 158 MIIDNDINSIIVKP----LKEGVTLHAIVDACHSGTI 190 (250)
Q Consensus 158 ~i~~~~L~~~L~~~----l~~~~~v~~ilD~C~SG~~ 190 (250)
.+..++|...+... +....+ ++|+|||+.+..
T Consensus 136 ~v~l~~I~~~f~~~~CpsL~gKPK-lffiqACRg~~~ 171 (178)
T 2h54_A 136 ILQLNAIFNMLNTKNCPSLKDKPK-VIIIQACRGDSP 171 (178)
T ss_dssp EECHHHHHHHHSTTTCGGGTTSCE-EEEEESCSSSBC
T ss_pred EEEHHHHHHHHhhcCChhhcCCce-EEEEECCCCCCC
Confidence 46677888776431 223345 699999998654
No 7
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=99.66 E-value=1.3e-15 Score=133.82 Aligned_cols=172 Identities=13% Similarity=0.126 Sum_probs=121.8
Q ss_pred CCeEEEEEeec-CCC-CCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHh-CCCC
Q 025578 43 PSRRAVLCGVS-YNK-GKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVND-CRKG 119 (250)
Q Consensus 43 ~~~~ALlIGi~-Y~~-~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~-~~~~ 119 (250)
++.+|||||+. |.. ...++.|+.+|++.|+++|+ .+||. |.+..| .|+++|.++|+++.++ ....
T Consensus 31 ~rg~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~~~~~dh~~~ 98 (272)
T 1m72_A 31 HRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLK-TLGFK---VTVFPN--------LKSEEINKFIQQTAEMDHSDA 98 (272)
T ss_dssp EEEEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHTSCCTTE
T ss_pred CCCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHH-HCCCE---EEEecC--------cCHHHHHHHHHHHHHhhcCCC
Confidence 47899999999 764 36889999999999999997 69997 677777 4999999999999876 4678
Q ss_pred CEEEEEEecCCcccCCCCCCCCCCceeeEEccCCCCCCcchHHHHHHHHHh----cccCCCeEEEEEeCCCCCCCCCchh
Q 025578 120 DSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVK----PLKEGVTLHAIVDACHSGTILDLEY 195 (250)
Q Consensus 120 D~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~~~~i~~~~L~~~L~~----~l~~~~~v~~ilD~C~SG~~~~~~~ 195 (250)
|.+++||.|||... ++++.|. .+..++|.+.+.. .+....| ++|+|||+...+.....
T Consensus 99 d~~v~~~lsHG~~~-------------~i~~~D~----~v~l~~i~~~f~~~~cpsL~gKPK-lffiqACRg~~~~~g~~ 160 (272)
T 1m72_A 99 DCLLVAVLTHGELG-------------MLYAKDT----HYKPDNLWYYFTADKCPTLAGKPK-LFFIQACQGDRLDGGIT 160 (272)
T ss_dssp EEEEEEEESCEETT-------------EEECSSS----EECTTHHHHTTSTTTCGGGTTSCE-EEEEESCSSSBCBCCEE
T ss_pred CEEEEEEcCCCCCC-------------EEEecCC----cEEHHHHHHHhccccChhhcCCce-EEEEeCCCCCcccCCcc
Confidence 99999999999731 6889885 3555677665532 1333345 69999999655532211
Q ss_pred hhcccccccccCCCCCcccccCCCCCEEEEeeeCCCCeeeccCC-Cchhhhhhhh
Q 025578 196 VYNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTSV-RFFFFDYIFI 249 (250)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~g~~v~lsAc~~~Q~A~E~~~-~G~FT~aL~~ 249 (250)
..+ ......+............++..|+.++.+||...+ ++.|+++|..
T Consensus 161 ~~~-----~~~d~~~~~~~~iP~~aD~Li~ysT~pG~vs~r~~~~GS~fiq~L~~ 210 (272)
T 1m72_A 161 LSR-----TETDGSPSTSYRIPVHADFLIAFSTVPGYFSWRNTTRGSWFMQALCE 210 (272)
T ss_dssp EEC--------------CEEECTTCSEEEEESSCTTBCCEEETTTEEHHHHHHHH
T ss_pred ccc-----cccccccccccccCCCCCEEEEEeCCCCcEeecCCCCCCHHHHHHHH
Confidence 000 000000001112334456788999999999999875 6999999964
No 8
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=99.65 E-value=1.7e-15 Score=135.24 Aligned_cols=172 Identities=12% Similarity=0.113 Sum_probs=122.3
Q ss_pred CCeEEEEEeec-CCC-CCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHh-CCCC
Q 025578 43 PSRRAVLCGVS-YNK-GKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVND-CRKG 119 (250)
Q Consensus 43 ~~~~ALlIGi~-Y~~-~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~-~~~~ 119 (250)
++.+||||++. |.. ...++.|+.+|+++|+++|+ .+||. |.+..| .|+++|.++|+++.++ ....
T Consensus 59 ~rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~f~~~dh~~~ 126 (310)
T 2nn3_C 59 HRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLK-TLGFK---VTVFPN--------LKSEEINKFIQQTAEMDHSDA 126 (310)
T ss_dssp BCCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHSSCGGGB
T ss_pred CcCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHH-HCCCE---EEEecC--------CCHHHHHHHHHHHHHhccCCC
Confidence 47899999999 764 36889999999999999997 69997 677777 4999999999999865 4678
Q ss_pred CEEEEEEecCCcccCCCCCCCCCCceeeEEccCCCCCCcchHHHHHHHHHh----cccCCCeEEEEEeCCCCCCCCCchh
Q 025578 120 DSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVK----PLKEGVTLHAIVDACHSGTILDLEY 195 (250)
Q Consensus 120 D~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~~~~i~~~~L~~~L~~----~l~~~~~v~~ilD~C~SG~~~~~~~ 195 (250)
|.++|||.|||... ++++.|. .+..++|.+.+.. .+....| ++|||||+...+.....
T Consensus 127 D~~vv~ilSHG~~g-------------~i~g~D~----~v~l~~I~~~f~~~~CpsL~gKPK-lffiQACRG~~~d~g~~ 188 (310)
T 2nn3_C 127 DCLLVAVLTAGELG-------------MLYAKDT----HYKPDNLWYYFTADKCPTLAGKPK-LFFIQACQGDRLDGGIT 188 (310)
T ss_dssp SCEEEEEEEEEETT-------------EEECSSC----EECTHHHHGGGSTTTCGGGTTSCE-EEEEEEECCCCCCCCC-
T ss_pred CEEEEEEeCCCCCC-------------EEEecCC----cEEHHHHHHHhccccChhhcCCce-EEEEecccCCccccCcc
Confidence 99999999999732 6889885 3566677665532 1333345 69999999766543211
Q ss_pred hhcccccccccCCCCCcccccCCCCCEEEEeeeCCCCeeeccCC-Cchhhhhhhh
Q 025578 196 VYNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTSV-RFFFFDYIFI 249 (250)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~g~~v~lsAc~~~Q~A~E~~~-~G~FT~aL~~ 249 (250)
... ......+......+.....++..|+.++.+||...+ ++.|+++|..
T Consensus 189 ~~~-----~~~d~~~~~~~~iP~~aD~LiayST~pG~vS~R~~~~GSwFIqaL~~ 238 (310)
T 2nn3_C 189 LSR-----TETDGSPSTSYRIPVHADFLIAFSTVPGYFSWRNTTRGSWFMQALCE 238 (310)
T ss_dssp -----------------CCCCCCSTTEEEEECCCCCEEESSSSEEEEHHHHHHHH
T ss_pred ccc-----cccccccccccccCCCCCEEEEEeCCCCceeecCCCCCCHHHHHHHH
Confidence 000 000000001112233456788999999999999875 7999999974
No 9
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=99.63 E-value=3.8e-15 Score=132.79 Aligned_cols=173 Identities=13% Similarity=0.087 Sum_probs=121.3
Q ss_pred CCeEEEEEeec-CCCC--CCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhC-CC
Q 025578 43 PSRRAVLCGVS-YNKG--KFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDC-RK 118 (250)
Q Consensus 43 ~~~~ALlIGi~-Y~~~--~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~-~~ 118 (250)
++++|||||+. |... +.++.|+.+|+..|+++|+ .+||. |.+..| .|+.+|.++|+++.+.. ..
T Consensus 68 ~rg~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~~~~~~h~~ 135 (305)
T 1f1j_A 68 KLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFR-SLGFD---VIVYND--------CSCAKMQDLLKKASEEDHTN 135 (305)
T ss_dssp EEEEEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHH-HHTEE---EEEEES--------CCHHHHHHHHHHHHHSCGGG
T ss_pred CCCEEEEEechhcCCCccCccCCCcHHHHHHHHHHHH-HCCCE---EEEecC--------cCHHHHHHHHHHHHHhhcCC
Confidence 57899999999 7642 5677899999999999997 69997 677777 49999999999987763 56
Q ss_pred CCEEEEEEecCCcccCCCCCCCCCCceeeEEccCCCCCCcchHHHHHHHHHh----cccCCCeEEEEEeCCCCCCCCCch
Q 025578 119 GDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVK----PLKEGVTLHAIVDACHSGTILDLE 194 (250)
Q Consensus 119 ~D~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~~~~i~~~~L~~~L~~----~l~~~~~v~~ilD~C~SG~~~~~~ 194 (250)
.|.++|||+|||... ++++.|. .+..++|...+.. .+....+ ++|||||+...+.+..
T Consensus 136 ~d~~vv~ilsHG~~~-------------~i~g~D~----~v~l~~I~~~f~~~~CpsL~gKPK-lffiQACRG~~~~~g~ 197 (305)
T 1f1j_A 136 AACFACILLSHGEEN-------------VIYGKDG----VTPIKDLTAHFRGDRSKTLLEKPK-LFFIQACRGTELDDGI 197 (305)
T ss_dssp EEEEEEEEESCEETT-------------EEECSSS----EEEHHHHHHTTSTTTCGGGTTSCE-EEEEESCCSSBCBCCB
T ss_pred CCEEEEEEecCCCCC-------------eEEecCC----eEEHHHHHHHhhhccChhhcCCce-EEEeccccCCcccCCc
Confidence 799999999999852 6888884 4666777665531 1223345 6999999987654322
Q ss_pred hhhcccccccccCCCCCcccccCCCCCEEEEeeeCCCCeeeccCC-Cchhhhhhhh
Q 025578 195 YVYNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTSV-RFFFFDYIFI 249 (250)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~lsAc~~~Q~A~E~~~-~G~FT~aL~~ 249 (250)
.. ..+.... ...............++..|+.++.+||...+ ++.|+++|..
T Consensus 198 ~~---~~~~~~~-~~~~~~~~ip~~aD~LiayST~pG~vs~r~~~~GS~FiqaL~~ 249 (305)
T 1f1j_A 198 QA---DSGPIND-TDANPRYKIPVEADFLFAYSTVPGYYSWRSPGRGSWFVQALCS 249 (305)
T ss_dssp C-------------------CBCTTTTEEEEESSCTTBCCEEETTTEEHHHHHHHH
T ss_pred cc---cCCcccc-cccccccccCCCCCEEEEEECCCCeeccCCCCCCCHHHHHHHH
Confidence 11 0000000 00000112233455788999999999999875 6899999974
No 10
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=99.63 E-value=2.7e-15 Score=130.34 Aligned_cols=170 Identities=15% Similarity=0.117 Sum_probs=121.8
Q ss_pred CCeEEEEEeec-CCC--CCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhC-CC
Q 025578 43 PSRRAVLCGVS-YNK--GKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDC-RK 118 (250)
Q Consensus 43 ~~~~ALlIGi~-Y~~--~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~-~~ 118 (250)
++++|||||+. |.. ...++.|+.+|++.|+++|+ .+||. |.+..| .|+++|.++|+++.++. +.
T Consensus 15 ~rg~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~~~~~~~~~ 82 (250)
T 2j32_A 15 EMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFR-NLKYE---VRNKND--------LTREEIVELMRDVSKEDHSK 82 (250)
T ss_dssp EEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHTSCCTT
T ss_pred CccEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHH-HCCCE---EEEEeC--------CCHHHHHHHHHHHHHhhccC
Confidence 57899999998 764 35789999999999999997 69998 677777 49999999999998764 66
Q ss_pred CCEEEEEEecCCcccCCCCCCCCCCceeeEEccCCCCCCcchHHHHHHHHHhc----ccCCCeEEEEEeCCCCCCCCCch
Q 025578 119 GDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKP----LKEGVTLHAIVDACHSGTILDLE 194 (250)
Q Consensus 119 ~D~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~~~~i~~~~L~~~L~~~----l~~~~~v~~ilD~C~SG~~~~~~ 194 (250)
.|.+++||.|||... .+.+.|. .+..++|.+.+... +..+.| ++|+|||+...+....
T Consensus 83 ~d~~v~~~lsHG~~g-------------~i~~~D~----~v~l~~i~~~f~~~~cp~L~gKPK-lf~iqACRg~~~~~g~ 144 (250)
T 2j32_A 83 RSSFVCVLLSHGEEG-------------IIFGTNG----PVDLKKITNFFRGDRCRSLTGKPK-LFIIQACRGTELDCGI 144 (250)
T ss_dssp EEEEEEEEESCEETT-------------EEEETTE----EEEHHHHHHTTSTTTCGGGTTSCE-EEEEESCSEEECBCCC
T ss_pred CCEEEEEECCCCCCC-------------eEEecCC----cEEHHHHHHHhccccChhHcCCCe-EEEEecccCCcccCCc
Confidence 899999999999832 4667774 56777887766321 333445 6999999965543221
Q ss_pred hhhcccccccccCCCCCcccccCCCCCEEEEeeeCCCCeeeccCC-Cchhhhhhhh
Q 025578 195 YVYNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTSV-RFFFFDYIFI 249 (250)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~lsAc~~~Q~A~E~~~-~G~FT~aL~~ 249 (250)
.. .++...+ ........+...++..|+.++.+||+..+ ++.|+++|..
T Consensus 145 ~~---~~~~~~~----~~~~~ip~~aD~Li~ysT~pG~vs~r~~~~gS~fiq~L~~ 193 (250)
T 2j32_A 145 AT---DSGVDDD----MACHKIPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCA 193 (250)
T ss_dssp CC-----------------CCCCTTTTEEEEESSCTEECCEEETTTEEHHHHHHHH
T ss_pred cc---cCCcccc----ccccccCCCCCEEEEEeCCCccEEecCCCCCcHHHHHHHH
Confidence 10 0000000 00112233456788999999999999875 7999999964
No 11
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=99.61 E-value=1.1e-14 Score=128.15 Aligned_cols=171 Identities=15% Similarity=0.123 Sum_probs=124.1
Q ss_pred CCCeEEEEEeec-CCC--CCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHh-CC
Q 025578 42 RPSRRAVLCGVS-YNK--GKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVND-CR 117 (250)
Q Consensus 42 ~~~~~ALlIGi~-Y~~--~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~-~~ 117 (250)
.++.+||||++. |.. ...++.|+.+|++.|+++|+ .+||. |.+..| .|+++|.++|+++.+. ..
T Consensus 42 ~~rg~aLIInN~~F~~~~~l~~R~Gt~~D~~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~f~~~dh~ 109 (277)
T 4ehd_A 42 PEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFR-NLKYE---VRNKND--------LTREEIVELMRDVSKEDHS 109 (277)
T ss_dssp SEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHTSCCT
T ss_pred CCCCEEEEEEchhcCCcCCCCCCCCCHHHHHHHHHHHH-HCCCE---EEEecC--------CCHHHHHHHHHHHHhhccc
Confidence 367899999999 653 36788999999999999997 69998 677777 4999999999999875 56
Q ss_pred CCCEEEEEEecCCcccCCCCCCCCCCceeeEEccCCCCCCcchHHHHHHHHHh----cccCCCeEEEEEeCCCCCCCCCc
Q 025578 118 KGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVK----PLKEGVTLHAIVDACHSGTILDL 193 (250)
Q Consensus 118 ~~D~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~~~~i~~~~L~~~L~~----~l~~~~~v~~ilD~C~SG~~~~~ 193 (250)
..|.++++|.|||.+. ++++.|. .+..++|...+.. .+....| ++|+|||+.......
T Consensus 110 ~~d~~vv~ilSHG~~g-------------~i~g~D~----~v~l~~I~~~f~~~~CpsL~gKPK-lffiQACRG~~~~~g 171 (277)
T 4ehd_A 110 KRSSFVCVLLSHGEEG-------------IIFGTNG----PVDLKKITNFFRGDRCRSLTGKPK-LFIIQACRGTELDCG 171 (277)
T ss_dssp TEEEEEEEEESCEETT-------------EEEETTE----EEEHHHHHHTTSTTTCGGGTTSCE-EEEEESCCSSBCBCC
T ss_pred CCCEEEEEEEcCCCCC-------------EEEEeCC----cEeHHHHHHHhhhccCchhcCCcc-EEEEecCCCCcccCC
Confidence 7899999999999862 5888885 4777788776642 1223345 699999997654432
Q ss_pred hhhhcccccccccCCCCCcccccCCCCCEEEEeeeCCCCeeeccCC-Cchhhhhhhh
Q 025578 194 EYVYNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTSV-RFFFFDYIFI 249 (250)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~lsAc~~~Q~A~E~~~-~G~FT~aL~~ 249 (250)
... .+..-.+ ......+.+...++..|+.++.+||...+ ++.|+++|..
T Consensus 172 ~~~---~~~~~~~----~~~~~ip~~aD~Li~yST~pG~vs~r~~~~GS~fIq~L~~ 221 (277)
T 4ehd_A 172 IET---DSGVDDD----MACHKIPVEADFLYACSTAPGYYSWRNSKDGSWFIQSLCA 221 (277)
T ss_dssp CCC-----------------CCCCTTTTEEEEESSCTTBCCEEETTTEEHHHHHHHH
T ss_pred ccc---cCCcccc----ccccccCCCCCEEEEEECCCCeEeecCCCCCcHHHHHHHH
Confidence 111 0000000 01122334566788999999999999875 6999999864
No 12
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=99.61 E-value=2e-15 Score=131.79 Aligned_cols=174 Identities=14% Similarity=0.132 Sum_probs=112.6
Q ss_pred CCeEEEEEeec-CCC-CCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHh-CCCC
Q 025578 43 PSRRAVLCGVS-YNK-GKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVND-CRKG 119 (250)
Q Consensus 43 ~~~~ALlIGi~-Y~~-~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~-~~~~ 119 (250)
++++||||++. |.. ...++.|+.+|++.|+++|+ .+||. |.+..| .|+++|.++|+++.+. ....
T Consensus 19 ~rg~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~~~~~~h~~~ 86 (259)
T 3sir_A 19 NRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLK-QLDFE---VTVYKD--------CRYKDILRTIEYSASQNHSDS 86 (259)
T ss_dssp EEEEEEEEEECCC-----------CCHHHHHHHHHH-HTTCE---EEEEEE--------CSHHHHHHHHHHHHTSCCTTE
T ss_pred CccEEEEEeccccCCCCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEEeC--------CCHHHHHHHHHHHHHhhccCC
Confidence 57889999999 664 35788999999999999997 69998 577767 4999999999998865 5678
Q ss_pred CEEEEEEecCCcccCCCCCCCCCCceeeEEccCCCCCCcchHHHHHHHHHh----cccCCCeEEEEEeCCCCCCCCCchh
Q 025578 120 DSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVK----PLKEGVTLHAIVDACHSGTILDLEY 195 (250)
Q Consensus 120 D~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~~~~i~~~~L~~~L~~----~l~~~~~v~~ilD~C~SG~~~~~~~ 195 (250)
|.+++||.|||.+. ++++.|. .+..++|.+.+.. .+..+.| ++|+|||+...+.....
T Consensus 87 d~~v~~~lsHG~~g-------------~i~~~D~----~v~l~~i~~~f~~~~cpsL~gKPK-lf~iQACRG~~~~~g~~ 148 (259)
T 3sir_A 87 DCILVAILSHGEMG-------------YIYAKDT----QYKLDNIWSFFTANHCPSLAGKPK-LFFIQACQGDRLDGGVT 148 (259)
T ss_dssp EEEEEEEEECTTCC-------------CCCCTTH----HHHHHHTTGGGSTTTCGGGSSSCE-EEEEEEETTSCEEC---
T ss_pred CEEEEEEecCCCCC-------------eEEeCCC----cEEHHHHHHHhhhccCccccCCCC-EEEEecCCCCcccCCcc
Confidence 99999999999873 3667773 3555566554431 1222345 69999999866543211
Q ss_pred hhcccccccccCCCCCcccccCCCCCEEEEeeeCCCCeeeccC-CCchhhhhhhh
Q 025578 196 VYNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTS-VRFFFFDYIFI 249 (250)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~g~~v~lsAc~~~Q~A~E~~-~~G~FT~aL~~ 249 (250)
.... ............+.+.+...++..|+.++.+||... .++.|+++|..
T Consensus 149 ~~~~---~~~~dg~~~~~~~ip~~aD~Li~yST~pG~vs~r~~~~GS~fiq~L~~ 200 (259)
T 3sir_A 149 MQRS---QTETDGDSSMSYKIPVHADFLIAYSTVPGFYSWRNTTRGSWFMQSLCA 200 (259)
T ss_dssp -----------------CEECCCCTTEEEEEEEECCSCCCSSCCCSCHHHHHHHH
T ss_pred cccC---cccccCcccccccCCCCCCEEEEEECCCCeEeecCCCCCcHHHHHHHH
Confidence 1000 000000001112233456678899999999999987 47999999864
No 13
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=99.58 E-value=3.4e-14 Score=125.22 Aligned_cols=178 Identities=12% Similarity=0.124 Sum_probs=123.9
Q ss_pred CCCeEEEEEeec-CCC--CCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHh-CC
Q 025578 42 RPSRRAVLCGVS-YNK--GKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVND-CR 117 (250)
Q Consensus 42 ~~~~~ALlIGi~-Y~~--~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~-~~ 117 (250)
.++.+||||++. |.. ...++.|+.+|++.|+++|+ .+||. |.+..| .|+++|.++|+++... ..
T Consensus 19 ~~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~~~~~~h~ 86 (278)
T 3od5_A 19 RRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFS-DLGFE---VKCFND--------LKAEELLLKIHEVSTVSHA 86 (278)
T ss_dssp SBCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHHSCCT
T ss_pred CCcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHH-HCCCE---EEEecC--------CCHHHHHHHHHHHHhhccc
Confidence 467899999999 664 46889999999999999997 69997 677777 4999999999998654 46
Q ss_pred CCCEEEEEEecCCcccCCCCCCCCCCceeeEEccCCCCCCcchHHHHHHHHHh----cccCCCeEEEEEeCCCCCCCCCc
Q 025578 118 KGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVK----PLKEGVTLHAIVDACHSGTILDL 193 (250)
Q Consensus 118 ~~D~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~~~~i~~~~L~~~L~~----~l~~~~~v~~ilD~C~SG~~~~~ 193 (250)
..|.++++|.+||... ++.+.|.. +..++|.+.+.. .+....| ++|+|||+.......
T Consensus 87 ~~d~~vv~ilSHG~~g-------------~i~g~D~~----v~l~~I~~~f~~~~CpsL~gKPK-lffiQACRG~~~~~g 148 (278)
T 3od5_A 87 DADCFVCVFLSHGEGN-------------HIYAYDAK----IEIQTLTGLFKGDKCHSLVGKPK-IFIIQACRGNQHDVP 148 (278)
T ss_dssp TBSCEEEEEESCEETT-------------EEECSSSE----EEHHHHHHTTSTTTCGGGTTSCE-EEEEESCCSSBCBCE
T ss_pred CCCEEEEEEECCCCCC-------------EEEEeCCe----EEHHHHHHHhccccChhhcCCCc-EEEEecCCCCcccCC
Confidence 7899999999999852 58888853 777788776642 1323345 699999997655432
Q ss_pred hhhhcccc-c--ccccC---CCCCcccccCCCCCEEEEeeeCCCCeeeccCC-Cchhhhhhhh
Q 025578 194 EYVYNKYQ-M--TWEDN---RPPSGARKATDGGLAICLSACQDNQLASDTSV-RFFFFDYIFI 249 (250)
Q Consensus 194 ~~~~~~~~-~--~~~~~---~~~~~~~~~~~~g~~v~lsAc~~~Q~A~E~~~-~G~FT~aL~~ 249 (250)
........ . ..... .......+...+...++..|+.++.+||.... ++.|+++|..
T Consensus 149 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~iP~~aD~Li~yST~pG~vs~R~~~~GS~fIq~L~~ 211 (278)
T 3od5_A 149 VIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCE 211 (278)
T ss_dssp ECCC---------------------CCCEETTTTEEEEESSCTTBCCEEETTTEEHHHHHHHH
T ss_pred eecccccccccccccccccccccccccccCCCCCeEEEEeCCCCeEEecCCCCCcHHHHHHHH
Confidence 11000000 0 00000 00001112334556888999999999999864 6999999864
No 14
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=99.56 E-value=1.1e-13 Score=121.61 Aligned_cols=179 Identities=15% Similarity=0.087 Sum_probs=122.0
Q ss_pred CCCeEEEEEeec-CCC---------CCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHH
Q 025578 42 RPSRRAVLCGVS-YNK---------GKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEW 111 (250)
Q Consensus 42 ~~~~~ALlIGi~-Y~~---------~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~ 111 (250)
.++.+||||++. |.. ...+..|+.+|++.|+++|+ .+||. |.+..| .|.++|.++|++
T Consensus 15 ~~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~ 82 (271)
T 3h11_B 15 KPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFE-ELHFE---IKPHDD--------CTVEQIYEILKI 82 (271)
T ss_dssp SSCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHH
T ss_pred CCCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHH-HCCCE---EEEEeC--------CCHHHHHHHHHH
Confidence 467899999998 654 25778999999999999997 69998 677777 499999999999
Q ss_pred HHHh-CCCCCEEEEEEecCCcccCCCCCCCCCCceeeEEccCCCCCCcchHHHHHHHHHh----cccCCCeEEEEEeCCC
Q 025578 112 LVND-CRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVK----PLKEGVTLHAIVDACH 186 (250)
Q Consensus 112 l~~~-~~~~D~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~~~~i~~~~L~~~L~~----~l~~~~~v~~ilD~C~ 186 (250)
+.+. .+..|.++++|.+||... ++++.|.. .+..++|.+.+.. .+....| ++|+|||+
T Consensus 83 ~~~~~h~~~d~~v~~ilSHG~~g-------------~i~g~D~~---~v~l~~I~~~f~~~~CpsL~gKPK-lffiQACR 145 (271)
T 3h11_B 83 YQLMDHSNMDCFICCILSHGDKG-------------IIYGTDGQ---EAPIYELTSQFTGLKCPSLAGKPK-VFFIQACQ 145 (271)
T ss_dssp HHHSCCTTCSCEEEEEESCEETT-------------EEECTTSC---EEEHHHHHGGGSTTTCGGGTTSCE-EEEEESCC
T ss_pred HHHhcCCCCCEEEEEEEcCCcCC-------------EEEecCCC---eecHHHHHHHhhhccChhhcCCcc-EEEEeccC
Confidence 9765 357899999999999852 58888853 3566677766532 1323345 69999999
Q ss_pred CCCCCCchhhhccc--ccccccCCCCCcccccCCCCCEEEEeeeCCCCeeeccCC-Cchhhhhhhh
Q 025578 187 SGTILDLEYVYNKY--QMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTSV-RFFFFDYIFI 249 (250)
Q Consensus 187 SG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~v~lsAc~~~Q~A~E~~~-~G~FT~aL~~ 249 (250)
.............. .+..+...........+.+...++..|+.++.+||.... ++.|+++|..
T Consensus 146 G~~~~~gv~~~~~~~~~~~~e~d~~~~~~~~iP~~aD~Li~yST~pG~vs~R~~~~GS~fIq~L~~ 211 (271)
T 3h11_B 146 GDNYQKGIPVETASEEQPYLEMALSSPQTRYIPDEADFLLGMATVNNCVSYRNPAEGTWYIQSLCQ 211 (271)
T ss_dssp SSBCC----------------------CCCCSCSSSSEEEEESSCTTBCCEEETTTEEHHHHHHHH
T ss_pred CCcccCCceeccCCccccccccccccccccccCCCCceEEEEECCCCceeecCCCCCcHHHHHHHH
Confidence 87654321110000 000000000001112334556788999999999999875 6899999864
No 15
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=99.55 E-value=1.5e-13 Score=120.91 Aligned_cols=186 Identities=15% Similarity=0.082 Sum_probs=121.2
Q ss_pred CCCeEEEEEeec-CCC--CCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhC-C
Q 025578 42 RPSRRAVLCGVS-YNK--GKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDC-R 117 (250)
Q Consensus 42 ~~~~~ALlIGi~-Y~~--~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~-~ 117 (250)
.++.+||||++. |.. ...++.|+.+|++.|+++|+ .+||. |.+..| .|+++|+++|+++.++. .
T Consensus 19 ~~rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~~~~~~h~ 86 (277)
T 1nw9_B 19 EPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFS-SLHFM---VEVKGD--------LTAKKMVLALLELARQDHG 86 (277)
T ss_dssp SSCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHH-HTTEE---EEEEES--------CCHHHHHHHHHHHHHSCCT
T ss_pred CcccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEEcC--------CCHHHHHHHHHHHHHhhcc
Confidence 467899999999 654 35789999999999999997 69998 677777 49999999999998764 5
Q ss_pred CCCEEEEEEecCCcccCCCCCCCCCCceeeEEccCCCCCCcchHHHHHHHHHh----cccCCCeEEEEEeCCCCCCCCCc
Q 025578 118 KGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVK----PLKEGVTLHAIVDACHSGTILDL 193 (250)
Q Consensus 118 ~~D~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~~~~i~~~~L~~~L~~----~l~~~~~v~~ilD~C~SG~~~~~ 193 (250)
..|.++++|.|||.+.... +.+..+.+.|.. .+..++|.+.+.. .+..+.| ++|+|||+.......
T Consensus 87 ~~D~~vv~ilSHG~~~~~~------~~~g~iy~~D~~---~v~l~~i~~~f~~~~CpsL~gKPK-lffiQACRG~~~d~g 156 (277)
T 1nw9_B 87 ALDCCVVVILSHGCQASHL------QFPGAVYGTDGC---PVSVEKIVNIFNGTSCPSLGGKPK-LFFIQACGGEQKDHG 156 (277)
T ss_dssp TCSEEEEEEEEEEECCCCS------SSCCEEECTTSC---EEEHHHHHHTTCTTTCGGGTTSCE-EEEEEEEC-------
T ss_pred cCCeEEEEEeCCCCccccc------cCCCcEEecCCc---eeeHHHHHHHhcccCChhHcCCCc-EEEEeccCCCcccCC
Confidence 6799999999999875321 111257777742 4666777776532 1333345 699999987654322
Q ss_pred hhhhcc--ccc----ccc-cCC----------CCCcccccCCCCCEEEEeeeCCCCeeeccCC-Cchhhhhhhh
Q 025578 194 EYVYNK--YQM----TWE-DNR----------PPSGARKATDGGLAICLSACQDNQLASDTSV-RFFFFDYIFI 249 (250)
Q Consensus 194 ~~~~~~--~~~----~~~-~~~----------~~~~~~~~~~~g~~v~lsAc~~~Q~A~E~~~-~G~FT~aL~~ 249 (250)
...... ... ..+ +.. .+....+.+.+...++..|+.++.+||...+ ++.|+++|..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~aD~Li~ysT~pG~vs~R~~~~GS~fiq~L~~ 230 (277)
T 1nw9_B 157 FEVASTSPEDESPGSNPEPDATPFQEGLRTFDQLDAISSLPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETLDD 230 (277)
T ss_dssp --------------------CBCCC------------CCCCCSCSEEEEEECCCCBSSTTCTTSCBHHHHHHHH
T ss_pred ceeccCCcccccccccccccccccccccccccccccccccCCCCCEEEEEcCCCCeEEEcCCCCCcHHHHHHHH
Confidence 111000 000 000 000 0011122334566788999999999999875 6899999974
No 16
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=99.54 E-value=9.4e-14 Score=124.43 Aligned_cols=182 Identities=11% Similarity=0.066 Sum_probs=120.5
Q ss_pred CCeEEEEEeec-CCCCCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhC-C-CC
Q 025578 43 PSRRAVLCGVS-YNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDC-R-KG 119 (250)
Q Consensus 43 ~~~~ALlIGi~-Y~~~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~-~-~~ 119 (250)
++.+||||++. |.....++.|+.+|+++|+++|+ .+||. |.+..| .|+++|.++|+++.+.. . ..
T Consensus 60 ~rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~f~~~~h~~~~ 127 (316)
T 2fp3_A 60 NRGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQ-ELNFT---IFPYGN--------VNQDQFFKLLTMVTSSSYVQNT 127 (316)
T ss_dssp CSEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHH-HTTEE---EEEECS--------CCHHHHHHHHHHHHTSHHHHTC
T ss_pred CCcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEccC--------CCHHHHHHHHHHHHHHhhcCCC
Confidence 67899999999 66422789999999999999997 69997 677777 49999999999998654 3 78
Q ss_pred CEEEEEEecCCcccCCCCCCCCCCceeeEEccCCCCCCcchHHHHHHHHHh----cccCCCeEEEEEeCCCCCCCCCchh
Q 025578 120 DSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVK----PLKEGVTLHAIVDACHSGTILDLEY 195 (250)
Q Consensus 120 D~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~~~~i~~~~L~~~L~~----~l~~~~~v~~ilD~C~SG~~~~~~~ 195 (250)
|.+++||.|||.+... +.++++.|.. .+..++|.+.+.. .+..+.| ++|+|||+.........
T Consensus 128 D~~vv~ilSHG~~~~g---------~g~i~g~D~~---~v~l~~I~~~f~~~~CpsL~gKPK-lffiQACRG~~~d~g~~ 194 (316)
T 2fp3_A 128 ECFVMVLMTHGNSVEG---------KEKVEFRDGS---VVDMQKIKDHFQTAKCPYLVNKPK-VLMFPFARGDEYDLGHP 194 (316)
T ss_dssp SCEEEEEESCEECCTT---------CCEEECTTSC---EEEHHHHHHTTSTTTCGGGTTSCE-EEEESCC----------
T ss_pred CEEEEEEccCCCccCC---------CCEEEeecCc---EEeHHHHHHHhccccChhhcCCce-EEEEecCCCCcccCCce
Confidence 9999999999988642 2279999853 3666788776632 1223345 69999999765532211
Q ss_pred hhcccc----ccccc----CC-C---CCcccccCCCCCEEEEeeeCCCCeeeccCC-Cchhhhhhhh
Q 025578 196 VYNKYQ----MTWED----NR-P---PSGARKATDGGLAICLSACQDNQLASDTSV-RFFFFDYIFI 249 (250)
Q Consensus 196 ~~~~~~----~~~~~----~~-~---~~~~~~~~~~g~~v~lsAc~~~Q~A~E~~~-~G~FT~aL~~ 249 (250)
...... ..... .. . .............++..|+.++.+||...+ ++.|+++|..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~iP~~aD~Li~yST~pG~vS~R~~~~GSwFIq~L~~ 261 (316)
T 2fp3_A 195 KNQGNLMEPVYTAQEEKWPDTQTEGIPSPSTNVPSLADTLVCYANTPGYVTHRDLDTGSWYIQKFCQ 261 (316)
T ss_dssp -----------------------------CCCCCCCCSEEEEECCCSCCCBTTTBCHHHHHHHHHHH
T ss_pred eccCcccccccccccccccccccccccccccccCCCCCEEEEEeCCCCceeccCCCCCCHHHHHHHH
Confidence 100000 00000 00 0 001122334566888999999999999875 6899999964
No 17
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=99.18 E-value=4.4e-10 Score=91.73 Aligned_cols=120 Identities=18% Similarity=0.253 Sum_probs=93.1
Q ss_pred CCCeEEEEEeec-CCC--CCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHH--hC
Q 025578 42 RPSRRAVLCGVS-YNK--GKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVN--DC 116 (250)
Q Consensus 42 ~~~~~ALlIGi~-Y~~--~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~--~~ 116 (250)
.++.+||||.+. |.. ...+..|+..|++.|.++|+ .+||. |.+..| .|.++|.+.|+++.+ ..
T Consensus 31 ~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~~~~~~dh 98 (167)
T 1pyo_A 31 RPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFK-LLGYD---VHVLCD--------QTAQEMQEKLQNFAQLPAH 98 (167)
T ss_dssp SSSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHH-HTTEE---EEEEES--------CCHHHHHHHHHHHHTCGGG
T ss_pred CCceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHH-HCCCE---EEEeeC--------CCHHHHHHHHHHhhhhhhc
Confidence 458899999988 653 25678999999999999997 69997 566666 499999999999987 34
Q ss_pred CCCCEEEEEEecCCcccCCCCCCCCCCceeeEEccCCCCCCcchHHHHHHHHHh----cccCCCeEEEEEeCCCCCCC
Q 025578 117 RKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVK----PLKEGVTLHAIVDACHSGTI 190 (250)
Q Consensus 117 ~~~D~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~~~~i~~~~L~~~L~~----~l~~~~~v~~ilD~C~SG~~ 190 (250)
...|.+++++.+||... ++.+.|. ..+..++|...+.. .+....| ++|++||+....
T Consensus 99 ~~~dc~vv~ilSHG~~g-------------~i~g~D~---~~v~l~~i~~~F~~~~CpsL~gKPK-lffiQACRG~~~ 159 (167)
T 1pyo_A 99 RVTDSCIVALLSHGVEG-------------AIYGVDG---KLLQLQEVFQLFDNANCPSLQNKPK-MFFIQACRGDET 159 (167)
T ss_dssp GTSSEEEEEEESCEETT-------------EEECTTS---CEEEHHHHHHHTSTTTCGGGTTSCE-EEEEESCSSSBC
T ss_pred cCCCEEEEEeCCCCCCC-------------eEEEeCC---CEEcHHHHHHHhcccCChhHcCCCe-EEEEECCCCCCC
Confidence 67899999999999863 5778884 23666788877642 1333345 699999987554
No 18
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=99.00 E-value=5.9e-09 Score=83.19 Aligned_cols=118 Identities=18% Similarity=0.236 Sum_probs=90.2
Q ss_pred CCeEEEEEeec-CCC--CCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhC-CC
Q 025578 43 PSRRAVLCGVS-YNK--GKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDC-RK 118 (250)
Q Consensus 43 ~~~~ALlIGi~-Y~~--~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~-~~ 118 (250)
++.+||||.+. |.. ...+..|+..|++.|.++|+ .+||. |.+..| .|.++|.+.|+++.+.. ..
T Consensus 15 ~rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~~~~~dh~~ 82 (146)
T 2dko_A 15 EMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFR-NLKYE---VRNKND--------LTREEIVELMRDVSKEDHSK 82 (146)
T ss_dssp EEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHHSCCTT
T ss_pred CceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHH-HCCCE---EEEeeC--------CCHHHHHHHHHHHHHhhcCC
Confidence 56789999887 543 25678999999999999997 69998 577767 49999999999998763 56
Q ss_pred CCEEEEEEecCCcccCCCCCCCCCCceeeEEccCCCCCCcchHHHHHHHHHh----cccCCCeEEEEEeCCCCCCC
Q 025578 119 GDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVK----PLKEGVTLHAIVDACHSGTI 190 (250)
Q Consensus 119 ~D~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~~~~i~~~~L~~~L~~----~l~~~~~v~~ilD~C~SG~~ 190 (250)
.|.+++++.+||... ++.+.|. .+..++|...+.. .+....| ++|++||+....
T Consensus 83 ~dc~vv~ilSHG~~g-------------~i~g~D~----~~~l~~i~~~F~~~~CpsL~gKPK-lffiQACRG~~~ 140 (146)
T 2dko_A 83 RSSFVCVLLSHGEEG-------------IIFGTNG----PVDLKKITNFFRGDRCRSLTGKPK-LFIIQACRGTEL 140 (146)
T ss_dssp EEEEEEEEESCEETT-------------EEEETTE----EEEHHHHHHTTSTTTCGGGTTSCE-EEEEESCCSSBC
T ss_pred CCeEEEEeccCCCCC-------------EEEEeCC----cEeHHHHHHHhccccChhhcCCCe-EEEEECCCCCCC
Confidence 799999999999842 5778884 4666777776532 1223345 699999986544
No 19
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=98.93 E-value=1.4e-08 Score=82.63 Aligned_cols=119 Identities=16% Similarity=0.147 Sum_probs=90.5
Q ss_pred CCeEEEEEeec-CCC---------CCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHH
Q 025578 43 PSRRAVLCGVS-YNK---------GKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWL 112 (250)
Q Consensus 43 ~~~~ALlIGi~-Y~~---------~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l 112 (250)
++.+||||.+. |.. ...+..|+..|++.|.++|+ .+||. |.+..| .|.++|.+.|+.+
T Consensus 22 ~rG~~LIinn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~~ 89 (164)
T 1qtn_A 22 PRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFE-ELHFE---IKPHDD--------CTVEQIYEILKIY 89 (164)
T ss_dssp SCCEEEEEECCCCHHHHHHCGGGTTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHH
T ss_pred CceEEEEEechhcCCccccccccccCcCCCCcHHHHHHHHHHHH-HCCCE---EEEecC--------CCHHHHHHHHHHH
Confidence 47899999887 542 25688999999999999997 69998 566666 4999999999999
Q ss_pred HHh-CCCCCEEEEEEecCCcccCCCCCCCCCCceeeEEccCCCCCCcchHHHHHHHHHh----cccCCCeEEEEEeCCCC
Q 025578 113 VND-CRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVK----PLKEGVTLHAIVDACHS 187 (250)
Q Consensus 113 ~~~-~~~~D~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~~~~i~~~~L~~~L~~----~l~~~~~v~~ilD~C~S 187 (250)
.+. ....|.+++++.+||... .+.+.|.. .+..++|...+.. .+....| ++|++||+.
T Consensus 90 ~~~dh~~~dc~vv~ilSHG~~g-------------~i~g~D~~---~v~i~~i~~~F~~~~CpsL~gKPK-lFfiQACRG 152 (164)
T 1qtn_A 90 QLMDHSNMDCFICCILSHGDKG-------------IIYGTDGQ---EAPIYELTSQFTGLKCPSLAGKPK-VFFIQACQG 152 (164)
T ss_dssp HHSCCTTCSCEEEEEESCEETT-------------EEECTTSC---EEEHHHHHGGGSTTTCGGGTTSCE-EEEEESCSS
T ss_pred HHhhccCCCEEEEEeCCCCCCC-------------EEEeeCCC---EeeHHHHHHHhccccChhhcCCCe-EEEEECCCC
Confidence 765 467899999999999853 57787742 3566677765532 1323345 699999987
Q ss_pred CCC
Q 025578 188 GTI 190 (250)
Q Consensus 188 G~~ 190 (250)
...
T Consensus 153 ~~~ 155 (164)
T 1qtn_A 153 DNY 155 (164)
T ss_dssp SBC
T ss_pred CCc
Confidence 544
No 20
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=98.81 E-value=6.5e-08 Score=79.53 Aligned_cols=119 Identities=16% Similarity=0.189 Sum_probs=87.5
Q ss_pred CCCeEEEEEeec-CCC--CCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHh-CC
Q 025578 42 RPSRRAVLCGVS-YNK--GKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVND-CR 117 (250)
Q Consensus 42 ~~~~~ALlIGi~-Y~~--~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~-~~ 117 (250)
.++.+||||.+. |.. ...+..|+..|++.|.++|+ .+||. |.+..| .|.++|.+.|+++.+. ..
T Consensus 42 ~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~-~LGF~---V~~~~d--------lt~~em~~~l~~~~~~dh~ 109 (179)
T 3p45_A 42 RRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFS-DLGFE---VKCFND--------LKAEELLLKIHEVSTVSHA 109 (179)
T ss_dssp SBCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHTSCCT
T ss_pred CccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHH-HCCCE---EEEEeC--------CCHHHHHHHHHHHhhhhcC
Confidence 356789999998 543 46788999999999999997 69998 567666 4999999999997543 34
Q ss_pred CCCEEEEEEecCCcccCCCCCCCCCCceeeEEccCCCCCCcchHHHHHHHHHh----cccCCCeEEEEEeCCCCCCC
Q 025578 118 KGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVK----PLKEGVTLHAIVDACHSGTI 190 (250)
Q Consensus 118 ~~D~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~~~~i~~~~L~~~L~~----~l~~~~~v~~ilD~C~SG~~ 190 (250)
..|.+++++.+||... .+...|.. +..++|.+.+.. .|....| ++|+.||+....
T Consensus 110 ~~dc~vvvilSHG~~g-------------~I~g~D~~----v~l~~I~~~F~~~~CpsL~gKPK-lFfIQACRG~~~ 168 (179)
T 3p45_A 110 DADCFVCVFLSHGEGN-------------HIYAYDAK----IEIQTLTGLFKGDKCHSLVGKPK-IFIIQACRGNQH 168 (179)
T ss_dssp TBSCEEEEEESCEETT-------------EEECSSSE----EEHHHHHGGGSGGGCGGGTTSCE-EEEEECC-----
T ss_pred CCCEEEEEEeccCCCC-------------EEEEECCE----EEHHHHHHhcccccChhhCCCCc-EEEEECCCCCCC
Confidence 6799999999999842 47777742 666788776632 1322345 699999997544
No 21
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=98.79 E-value=2.4e-08 Score=87.43 Aligned_cols=170 Identities=12% Similarity=0.095 Sum_probs=108.0
Q ss_pred CCCeEEEEEeecCCCCCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHH--hCCCC
Q 025578 42 RPSRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVN--DCRKG 119 (250)
Q Consensus 42 ~~~~~ALlIGi~Y~~~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~--~~~~~ 119 (250)
.++.+||||.+- + +|++.|.++|+ .+||. |.+..| .|.++|.+.|+++.+ .....
T Consensus 41 ~~rG~~LIinn~--~---------~D~~~L~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~~~~~~dh~~~ 97 (272)
T 3h11_A 41 KPLGICLIIDCI--G---------NETELLRDTFT-SLGYE---VQKFLH--------LSMHGISQILGQFACMPEHRDY 97 (272)
T ss_dssp SSSEEEEEEESS--C---------CCCSHHHHHHH-HHTEE---EEEEES--------CBHHHHHHHHHHHHTCGGGGGC
T ss_pred CcceEEEEECCc--h---------HHHHHHHHHHH-HCCCE---EEEeeC--------CCHHHHHHHHHHHHhccccCCC
Confidence 356678877653 1 69999999997 69997 577767 499999999999976 46789
Q ss_pred CEEEEEEecCCcccCCCCCCCCCCceeeEEccCCCCCCcchHHHHHHHHHh----cccCCCeEEEEEeCCCCCCCC-Cch
Q 025578 120 DSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVK----PLKEGVTLHAIVDACHSGTIL-DLE 194 (250)
Q Consensus 120 D~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~~~~i~~~~L~~~L~~----~l~~~~~v~~ilD~C~SG~~~-~~~ 194 (250)
|.+++++.+||... ++.+.|.... .+..++|.+.+.. .+....| ++|++||+..... +..
T Consensus 98 d~~v~~ilSHG~~g-------------~i~g~D~~~~-~v~l~~i~~~f~~~~CpsL~gKPK-lffiQACRG~~~~~~~g 162 (272)
T 3h11_A 98 DSFVCVLVSRGGSQ-------------SVYGVDQTHS-GLPLHHIRRMFMGDSCPYLAGKPK-MFFIQNYVVSEGQLENS 162 (272)
T ss_dssp SEEEEEEEEEEETT-------------EECBTSCCSS-CEEHHHHHHHHSTTTCGGGTTSCE-EEEEEEEEC--------
T ss_pred CEEEEEEEcCCCCC-------------eEEEEcCCcc-eEeHHHHHHHhccccChhhcCCCc-EEEEECCCCCCcccCCC
Confidence 99999999999842 5778885321 3666788887743 1322345 6999999964211 111
Q ss_pred hhhcccccc---cccCCCCCcccccCCCCCEEEEeeeCCCCeeeccCC-Cchhhhhhhh
Q 025578 195 YVYNKYQMT---WEDNRPPSGARKATDGGLAICLSACQDNQLASDTSV-RFFFFDYIFI 249 (250)
Q Consensus 195 ~~~~~~~~~---~~~~~~~~~~~~~~~~g~~v~lsAc~~~Q~A~E~~~-~G~FT~aL~~ 249 (250)
.....++.. ...........+...+...++..|+.++.+||.... ++.|.++|..
T Consensus 163 ~~~~~D~~~~~~~~~~~~~~~~~~iP~~aDfL~~yST~pg~~s~R~~~~GSwfIq~Lc~ 221 (272)
T 3h11_A 163 SLLEVDGPAMKNVEFKAQKRGLCTVHREADFFWSLCTADMSLLEQSHSSPSLYLQCLSQ 221 (272)
T ss_dssp ------------------------CCTTCSEEEEEEEEEGGGTSSTTCCCCHHHHHHHH
T ss_pred cceeccCcccccccccccccccccCCCCCCEEEEEeccCCeEEEEeCCCCCHHHHHHHH
Confidence 000000000 000000001122344566788889999999998864 7999999863
No 22
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=98.78 E-value=8.3e-08 Score=78.54 Aligned_cols=118 Identities=17% Similarity=0.224 Sum_probs=87.9
Q ss_pred CCeEEEEEeec-CCC--CCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHh-CCC
Q 025578 43 PSRRAVLCGVS-YNK--GKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVND-CRK 118 (250)
Q Consensus 43 ~~~~ALlIGi~-Y~~--~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~-~~~ 118 (250)
++.+||||.+. |.. ......|+..|++.|.++|+ .+||. |.+..| .|.++|.+.|+++.+. ...
T Consensus 43 ~rG~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~-~LgF~---V~v~~d--------lt~~em~~~l~~~s~~dh~~ 110 (173)
T 2ql9_A 43 KLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFR-SLGFD---VIVYND--------CSCAKMQDLLKKASEEDHTN 110 (173)
T ss_dssp EEEEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHH-HHTEE---EEEEES--------CCHHHHHHHHHHHHTSCCTT
T ss_pred CceEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEEeC--------CCHHHHHHHHHHHHHhhccC
Confidence 46678898887 543 24667899999999999997 69998 566666 4999999999998765 356
Q ss_pred CCEEEEEEecCCcccCCCCCCCCCCceeeEEccCCCCCCcchHHHHHHHHHh----cccCCCeEEEEEeCCCCCCC
Q 025578 119 GDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVK----PLKEGVTLHAIVDACHSGTI 190 (250)
Q Consensus 119 ~D~v~~yfSGHG~~~~~~~~~~~~g~d~~l~p~D~~~~~~i~~~~L~~~L~~----~l~~~~~v~~ilD~C~SG~~ 190 (250)
.|.+++++.+||... .+.+.|. .+..++|...+.. .|....+ ++|++||+....
T Consensus 111 ~dc~vvvilSHG~~g-------------~I~g~D~----~~~i~~I~~~F~~~~CpsL~gKPK-lFfIQACRG~~~ 168 (173)
T 2ql9_A 111 AACFACILLSHGEEN-------------VIYGKDG----VTPIKDLTAHFRGDRCKTLLEKPK-LFFIQACRGTEL 168 (173)
T ss_dssp EEEEEEEEESCEETT-------------EEEETTE----EEEHHHHHGGGSTTTCGGGTTSCE-EEEEESCCSSBC
T ss_pred CCeEEEeecCCCCCC-------------EEEEcCC----cEEHHHHHHHcCcccChhHcCCCe-EEEEECCCCCCc
Confidence 799999999999753 4777774 3666677665531 1222345 699999986543
No 23
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=62.74 E-value=11 Score=32.90 Aligned_cols=56 Identities=9% Similarity=0.121 Sum_probs=32.4
Q ss_pred cCcHHHHHHHHHHHHhhcC--CCcccEEEe-cCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEE
Q 025578 62 KGTINDVRNMRDLLINSFK--FQEEGIIVL-TEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFY 125 (250)
Q Consensus 62 ~~a~~Da~~~~~~L~~~~G--~~~~~i~~L-~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~y 125 (250)
.|...=-+++++++...+| +++++|.++ +.. ..+.+.-++..+..-.+|||.|++-
T Consensus 71 ~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G--------~~~al~~~~~~l~~~~~~gd~Vlv~ 129 (401)
T 7aat_A 71 AGLADFTRASAELALGENSEAFKSGRYVTVQGIS--------GTGSLRVGANFLQRFFKFSRDVYLP 129 (401)
T ss_dssp TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH--------HHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred CCCHHHHHHHHHHhcCCCccccccCceEEEecCc--------chHHHHHHHHHHHHhccCCCEEEEc
Confidence 3433444567777765555 346777653 443 3445554555554446789999884
No 24
>1x3l_A Hypothetical protein PH0495; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 2.10A {Pyrococcus horikoshii}
Probab=51.80 E-value=64 Score=29.55 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=27.2
Q ss_pred CcccHHHHHHH--HHHHHHhCCCCCEEEEEEecCCcc
Q 025578 98 YSPTKKNIQKA--LEWLVNDCRKGDSLVFYFSGHGLR 132 (250)
Q Consensus 98 ~~pT~~~I~~~--l~~l~~~~~~~D~v~~yfSGHG~~ 132 (250)
..|+...+..+ +.++++.++++|.|++..||=|.-
T Consensus 99 PvPD~~s~~Aa~~il~~~~~l~~~Dlvl~LISGGGSA 135 (440)
T 1x3l_A 99 PIPDEKSILGAKEALSILNRARENDIVFILISGGGSA 135 (440)
T ss_dssp SSCCHHHHHHHHHHHHHHHHCCTTSEEEEEECTTHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCCCEEEEEecCcHHH
Confidence 45677666655 457788999999999999997754
No 25
>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle, structural genom structure 2 function project, S2F, unknown function; 1.80A {Escherichia coli}
Probab=45.62 E-value=49 Score=27.96 Aligned_cols=43 Identities=12% Similarity=0.158 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHH
Q 025578 65 INDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLV 113 (250)
Q Consensus 65 ~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~ 113 (250)
...|+.|+++|.+.+|++.+.|.+-..+.. |.+|+....+.+.
T Consensus 96 ~sEA~~m~~~l~~~~GVp~~~IllE~~S~n------T~ENa~~s~~ll~ 138 (266)
T 3ca8_A 96 RAEATILADIAHQFWHIPHEKIWIEDQSTN------CGENARFSIALLN 138 (266)
T ss_dssp SCHHHHHHHHHHHTTCCCGGGEEEECCCCS------HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHEEeCCCCcc------HHHHHHHHHHHHH
Confidence 467889999998656999988865544433 8999988776554
No 26
>2b8n_A Glycerate kinase, putative; TM1585, glycerate kinase (EC 2.7.1.31), structural genomics, center for structural genomics, JCSG; 2.53A {Thermotoga maritima} SCOP: c.118.1.1
Probab=44.31 E-value=46 Score=30.38 Aligned_cols=77 Identities=18% Similarity=0.275 Sum_probs=47.0
Q ss_pred CeEEEEEeecCCCCCCCCcCcHHHHHH-HHHHHH--------hhcCCC---cccEEEecCCccCCCCcccHHHHHHH--H
Q 025578 44 SRRAVLCGVSYNKGKFRLKGTINDVRN-MRDLLI--------NSFKFQ---EEGIIVLTEEEKDEMYSPTKKNIQKA--L 109 (250)
Q Consensus 44 ~~~ALlIGi~Y~~~~~~L~~a~~Da~~-~~~~L~--------~~~G~~---~~~i~~L~d~~a~~~~~pT~~~I~~~--l 109 (250)
..+.++||++ +.+..=|.+ +.+.+. .++|+. ..+|.++.-. +..|+...+..+ +
T Consensus 49 ~gr~~vvg~G--------KAa~~MA~aa~e~~~~~~~~GlVvt~~g~~~~~~~~i~v~eA~----HPvPD~~s~~Aa~~i 116 (429)
T 2b8n_A 49 LDRVILVAVG--------KAAWRMAKAAYEVLGKKIRKGVVVTKYGHSEGPIDDFEIYEAG----HPVPDENTIKTTRRV 116 (429)
T ss_dssp CCSEEEEEES--------TTHHHHHHHHHHHHGGGEEEEEEEEETTCCCSCCTTCEEEEEC----SSSCCHHHHHHHHHH
T ss_pred CCCEEEEEec--------HHHHHHHHHHHHHhhccCccEEEEECCCcCCCCCCceEEEECC----CCCCCHHHHHHHHHH
Confidence 3577899999 334433333 444441 123332 2455555433 345676666655 4
Q ss_pred HHHHHhCCCCCEEEEEEecCCcc
Q 025578 110 EWLVNDCRKGDSLVFYFSGHGLR 132 (250)
Q Consensus 110 ~~l~~~~~~~D~v~~yfSGHG~~ 132 (250)
.++++.++++|.|++..||=|.-
T Consensus 117 l~l~~~l~~~Dlvl~LISGGGSA 139 (429)
T 2b8n_A 117 LELVDQLNENDTVLFLLSGGGSS 139 (429)
T ss_dssp HHHHSSCCTTCEEEEEECTTHHH
T ss_pred HHHHhcCCCCCEEEEEecCcHHH
Confidence 47788899999999999997754
No 27
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=42.61 E-value=15 Score=28.31 Aligned_cols=18 Identities=28% Similarity=0.558 Sum_probs=14.8
Q ss_pred HHHhCCCCCEEEEEEecC
Q 025578 112 LVNDCRKGDSLVFYFSGH 129 (250)
Q Consensus 112 l~~~~~~~D~v~~yfSGH 129 (250)
++++.++||.+|||-|+-
T Consensus 31 ~lr~mk~GD~~~fYhs~~ 48 (145)
T 2hd9_A 31 TLSRVKPGDKLVIYVRQE 48 (145)
T ss_dssp HHTTCCTTCEEEEEECCE
T ss_pred HHHhCCCCCEEEEEEccc
Confidence 345789999999999964
No 28
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=42.43 E-value=1.5e+02 Score=24.72 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=38.4
Q ss_pred cHHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecCCcc
Q 025578 64 TINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLR 132 (250)
Q Consensus 64 a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~ 132 (250)
+......+++.+.+.+|.++++|.+..+ +.+.+..++..+ .++||.|++--.+|...
T Consensus 49 ~~~~~~~l~~~la~~~~~~~~~i~~~~g---------~~~a~~~~~~~l---~~~gd~vl~~~~~~~~~ 105 (354)
T 3ly1_A 49 AKNEILMLGNKLAAHHQVEAPSILLTAG---------SSEGIRAAIEAY---ASLEAQLVIPELTYGDG 105 (354)
T ss_dssp CHHHHHHHHHHHHHHTTSCGGGEEEESH---------HHHHHHHHHHHH---CCTTCEEEEESSSCTHH
T ss_pred CCCchHHHHHHHHHHhCCChHHEEEeCC---------hHHHHHHHHHHH---hCCCCeEEECCCCchHH
Confidence 3455678888888878888888765433 345555555544 57899988876666543
No 29
>1cvr_A Gingipain R, RGPB; caspases, cysteine proteinase, hydrolase-hydrolase inhibitor; HET: H37; 2.00A {Porphyromonas gingivalis} SCOP: b.1.18.12 c.17.1.2
Probab=41.80 E-value=60 Score=29.52 Aligned_cols=73 Identities=21% Similarity=0.244 Sum_probs=39.7
Q ss_pred CeEEEEEeec-CCCCCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEE
Q 025578 44 SRRAVLCGVS-YNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSL 122 (250)
Q Consensus 44 ~~~ALlIGi~-Y~~~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v 122 (250)
++++++|+=+ ......+-.....+.+.+++.+. ..++. +|.-+.+.. +++++|.++++. | ..
T Consensus 142 r~~~l~ia~~~~~~~~d~G~~~~~~~~~~~~~~~-~~~~~--~v~k~ydp~------~~~~~I~~~ln~-------G-~~ 204 (435)
T 1cvr_A 142 LGQALCIASAEGGPSADNGESDIQHENVIANLLT-QYGYT--KIIKCYDPG------VTPKNIIDAFNG-------G-IS 204 (435)
T ss_dssp TTEEEEEECSCBCTTSGGGCBHHHHHHHHHHHHH-HHTCS--EEEEEESSS------CCHHHHHHHHHH-------C-CS
T ss_pred hceEEEEecCCCCcccccchhhhhHHHHHHhhhh-cCCcc--eeEEecCCc------cCHHHHHHHHhC-------C-Ce
Confidence 6788888854 21100100112355566666665 34443 244444544 366777765541 2 46
Q ss_pred EEEEecCCccc
Q 025578 123 VFYFSGHGLRQ 133 (250)
Q Consensus 123 ~~yfSGHG~~~ 133 (250)
++.|.|||...
T Consensus 205 ivnY~GHG~~~ 215 (435)
T 1cvr_A 205 LVNYTGHGSET 215 (435)
T ss_dssp EEEEESCBCSS
T ss_pred EEEEecCCCcc
Confidence 77778999765
No 30
>2i0x_A Hypothetical protein PF1117; PSI, STRU genomics, southeast collaboratory for structural genomics, structure initiative, secsg; 2.70A {Pyrococcus furiosus} SCOP: d.58.58.1
Probab=41.35 E-value=84 Score=21.59 Aligned_cols=52 Identities=17% Similarity=0.128 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCC-CCEEEEEEec
Q 025578 68 VRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRK-GDSLVFYFSG 128 (250)
Q Consensus 68 a~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~-~D~v~~yfSG 128 (250)
...+++.|+ .+|....+-...-+ .|.+++.+-...+..-..+ .|.+.||.-+
T Consensus 14 ~~kv~k~l~-~yg~rvQ~SVFeg~--------lt~~~~~~L~~~l~~~id~~~Dsv~iy~l~ 66 (85)
T 2i0x_A 14 VNKVKKFLR-MHLNWVQNSVFEGE--------VTLAEFERIKEGLKKIIDENSDSVIIYKLR 66 (85)
T ss_dssp HHHHHHHHT-TTSEEEETTEEEEE--------CCHHHHHHHHHHHHHSSCTTTCEEEEEEES
T ss_pred HHHHHHHHH-HhCcccceeEEEEE--------CCHHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence 457888886 46654333222111 3666666555555555655 6999999999
No 31
>2gbs_A Hypothetical protein RPA0253; alpha-beta, RPR3, NESG, structural genomics, COG294 protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: b.122.1.8
Probab=38.93 E-value=20 Score=27.80 Aligned_cols=18 Identities=28% Similarity=0.527 Sum_probs=14.3
Q ss_pred HHHHhCCCCCEEEEEEec
Q 025578 111 WLVNDCRKGDSLVFYFSG 128 (250)
Q Consensus 111 ~l~~~~~~~D~v~~yfSG 128 (250)
.+.+..+.||.+|||=|+
T Consensus 38 n~mr~Mk~GD~~ffYHS~ 55 (145)
T 2gbs_A 38 LHMVAMRRGDRAFYYHSN 55 (145)
T ss_dssp HHHHHCCTTCEEEEEETT
T ss_pred HHHHhcCCCCEEEEEEeC
Confidence 344468899999999887
No 32
>3uws_A Hypothetical protein; clostripain family protein, peptidase_C11, structural genomi center for structural genomics, JCSG; HET: MSE; 1.70A {Parabacteroides merdae}
Probab=37.38 E-value=79 Score=23.54 Aligned_cols=85 Identities=15% Similarity=0.144 Sum_probs=55.5
Q ss_pred eEEEEEeecCCCCCCCC-cCcHHHHHHHHHHHHhhcCCCcccEEEecCCcc-----------------------CCCCcc
Q 025578 45 RRAVLCGVSYNKGKFRL-KGTINDVRNMRDLLINSFKFQEEGIIVLTEEEK-----------------------DEMYSP 100 (250)
Q Consensus 45 ~~ALlIGi~Y~~~~~~L-~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a-----------------------~~~~~p 100 (250)
+|-++|=+... ++| .++.+|..+|.+.+.+ .|....++.++.|... ......
T Consensus 9 ~~TvlvYm~~d---N~L~~~~~~di~eM~~g~~~-~g~~~~~llV~~d~~~~~~~L~~i~~~~g~~~~~~lk~y~e~n~~ 84 (126)
T 3uws_A 9 TRTILVYMMAN---NSLNSFASKNIESMIEGATS-KNLNGGNLIVYYAPAGSPPELLRIKEENGVVKKIHLKDYEKQNSA 84 (126)
T ss_dssp EEEEEEEEEES---STTHHHHHHHHHHHHHHCCH-HHHTTCEEEEEEEESSSCCEEEEEEEETTEEEEEEEEECCSCCTT
T ss_pred CeEEEEEEcCC---CChHHHHHHHHHHHHHHHhc-CCCCCcEEEEEEcCCCCCCeEEEEEeCCCcEEeehhhccCCcCcC
Confidence 77787777653 356 6788999999988763 2333334454444210 012345
Q ss_pred cHHHHHHHHHHHHHhCCCCCEEEEEEecCCcccC
Q 025578 101 TKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQP 134 (250)
Q Consensus 101 T~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~~ 134 (250)
+.+.+.+-|++..+.. |-+.-.+-+-+||.-..
T Consensus 85 d~~~l~~~l~~~~~~~-PA~~y~LIlw~HG~GW~ 117 (126)
T 3uws_A 85 DPDVMRSVIGEVVSQY-PADSYGLVLWSHGTAWL 117 (126)
T ss_dssp SHHHHHHHHHHHHHHS-CEEEEEEEEESCBCTTC
T ss_pred CHHHHHHHHHHHHHhC-CccceEEEEEeCCCcCc
Confidence 7777888888887664 67888888889998653
No 33
>1zce_A Hypothetical protein ATU2648; alpha-beta protein., structural genomics, PSI, protein struc initiative; 1.30A {Agrobacterium tumefaciens str} SCOP: b.122.1.8
Probab=37.15 E-value=21 Score=27.95 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=14.6
Q ss_pred HHHHhCCCCCEEEEEEec
Q 025578 111 WLVNDCRKGDSLVFYFSG 128 (250)
Q Consensus 111 ~l~~~~~~~D~v~~yfSG 128 (250)
.+.+..+.||.+|||=|+
T Consensus 39 N~mr~Mk~GD~~fFYHS~ 56 (155)
T 1zce_A 39 NNMRAMKIGDKGFFYHSN 56 (155)
T ss_dssp HHHHTCCTTCEEEEEETT
T ss_pred HHHHhccCCCEEEEEEeC
Confidence 344568899999999887
No 34
>1zpw_X Hypothetical protein TT1823; hyphotetical protein, structural genom NPPSFA, national project on protein structural and function analyses; 1.64A {Thermus thermophilus} SCOP: d.58.58.1
Probab=37.03 E-value=62 Score=22.50 Aligned_cols=55 Identities=11% Similarity=0.003 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCC-CCEEEEEEecC
Q 025578 66 NDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRK-GDSLVFYFSGH 129 (250)
Q Consensus 66 ~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~-~D~v~~yfSGH 129 (250)
.....+++.|+ .+|....+-...-+ .|..+..+-...+..-..+ .|.++||.-+-
T Consensus 16 kr~~kv~k~l~-~yg~rvQ~SVFe~~--------lt~~~~~~L~~~L~~~id~~~Dsv~iy~l~~ 71 (90)
T 1zpw_X 16 TRRVKLANLLK-SYGERVQLSVFECY--------LDERLLEDLRRRARRLLDLGQDALRIYPVAG 71 (90)
T ss_dssp HHHHHHHHHHH-TTEEEEETTEEEEE--------ECHHHHHHHHHHHHHHCCTTTCEEEEEECCS
T ss_pred HHHHHHHHHHH-HhCccceEeEEEEE--------cCHHHHHHHHHHHHHhhCCCCCEEEEEEeCC
Confidence 66778899997 56744333222212 2444444433344444555 79999999887
No 35
>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP, unknown F; 1.60A {Leishmania major} SCOP: b.122.1.8
Probab=37.03 E-value=24 Score=28.18 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=15.4
Q ss_pred HHHHhCCCCCEEEEEEecCC
Q 025578 111 WLVNDCRKGDSLVFYFSGHG 130 (250)
Q Consensus 111 ~l~~~~~~~D~v~~yfSGHG 130 (250)
.+.+..+.||.+|||=|+..
T Consensus 54 N~mr~Mk~GD~vfFYHS~c~ 73 (172)
T 2ar1_A 54 NNMRAMSVGDKVLFYHSNTK 73 (172)
T ss_dssp HHHHHCCTTCEEEEEECSSS
T ss_pred HHHHhcCCCCEEEEEecCCC
Confidence 34446889999999988843
No 36
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=35.83 E-value=1.1e+02 Score=23.60 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=29.6
Q ss_pred HHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEE
Q 025578 69 RNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLV 123 (250)
Q Consensus 69 ~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~ 123 (250)
..++++|+ ..|+......++.| . +.|.++|++.++ ...|.|+
T Consensus 30 ~~l~~~l~-~~G~~v~~~~iv~D---------d-~~i~~al~~a~~--~~~DlVi 71 (164)
T 3pzy_A 30 PIITEWLA-QQGFSSAQPEVVAD---------G-SPVGEALRKAID--DDVDVIL 71 (164)
T ss_dssp HHHHHHHH-HTTCEECCCEEECS---------S-HHHHHHHHHHHH--TTCSEEE
T ss_pred HHHHHHHH-HCCCEEEEEEEeCC---------H-HHHHHHHHHHHh--CCCCEEE
Confidence 46788886 58998777777777 6 788888887664 1356554
No 37
>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A
Probab=35.76 E-value=26 Score=27.52 Aligned_cols=18 Identities=28% Similarity=0.576 Sum_probs=14.2
Q ss_pred HHHHhCCCCCEEEEEEec
Q 025578 111 WLVNDCRKGDSLVFYFSG 128 (250)
Q Consensus 111 ~l~~~~~~~D~v~~yfSG 128 (250)
.+.+..+.||.+|||=|+
T Consensus 36 N~mr~Mk~GD~~ffYHS~ 53 (157)
T 2eve_A 36 NFLRTMAEGDEFFFYHSS 53 (157)
T ss_dssp HHHHHCCTTCEEEEEECS
T ss_pred HHHHhcCCCCEEEEEecC
Confidence 334468899999999887
No 38
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=34.59 E-value=26 Score=27.00 Aligned_cols=16 Identities=31% Similarity=0.628 Sum_probs=12.7
Q ss_pred HHHhCCCCCEEEEEEec
Q 025578 112 LVNDCRKGDSLVFYFSG 128 (250)
Q Consensus 112 l~~~~~~~D~v~~yfSG 128 (250)
++++.++||.+||| .+
T Consensus 34 ~lr~Mk~GD~~~fY-~~ 49 (147)
T 2p5d_A 34 TINKVKVGDKLIIY-EI 49 (147)
T ss_dssp HHTTCCTTCEEEEE-EC
T ss_pred HHHhCCCCCEEEEE-Ee
Confidence 34478999999999 55
No 39
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=33.08 E-value=91 Score=26.65 Aligned_cols=54 Identities=11% Similarity=0.153 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecCC
Q 025578 66 NDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHG 130 (250)
Q Consensus 66 ~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG 130 (250)
.-...+++.|.+.+|.+.+++.++++. ..+.+..++..+ .++||.|++.--+|-
T Consensus 44 ~~~~~l~~~la~~~g~~~~~~~~~~~s--------~t~al~~~~~~l---~~~gd~Vl~~~~~~~ 97 (416)
T 3isl_A 44 GIMNETMEMLRELFQTKNRWAYPIDGT--------SRAGIEAVLASV---IEPEDDVLIPIYGRF 97 (416)
T ss_dssp HHHHHHHHHHHHHTTCCCSEEEEEESC--------HHHHHHHHHHHH---CCTTCEEEEEESSHH
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEecCc--------HHHHHHHHHHHh---cCCCCEEEEecCCcc
Confidence 346678888887889887766656664 345566666655 679999888766643
No 40
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=32.02 E-value=1.4e+02 Score=25.48 Aligned_cols=48 Identities=15% Similarity=0.068 Sum_probs=26.9
Q ss_pred HHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecCCc
Q 025578 71 MRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGL 131 (250)
Q Consensus 71 ~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~ 131 (250)
.++.+.+.+|.+.++|. +++. | +.+..++..+ +++||.|++---+|+.
T Consensus 76 ~~~~la~~~g~~~~~i~-~~sG--------t-~a~~~~~~~~---~~~gd~vl~~~~~~~~ 123 (417)
T 3n0l_A 76 AIERCKKLFNCKFANVQ-PNSG--------S-QANQGVYAAL---INPGDKILGMDLSHGG 123 (417)
T ss_dssp HHHHHHHHHTCSEEECC-CSSH--------H-HHHHHHHHHH---SCTTCEEEEECC----
T ss_pred HHHHHHHHhCCCCcceE-eccH--------H-HHHHHHHHHh---cCCCCEEEeccccccc
Confidence 44566666787765442 2221 3 5555555554 6799999887666643
No 41
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=31.44 E-value=1.2e+02 Score=23.91 Aligned_cols=55 Identities=15% Similarity=0.123 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecCCcccC
Q 025578 66 NDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQP 134 (250)
Q Consensus 66 ~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~~ 134 (250)
.....++++|. ..|+....+.++.| ..+.|.++|++..++ .|.| |---|-|....
T Consensus 23 tN~~~l~~~L~-~~G~~v~~~~iv~D---------d~~~I~~~l~~a~~~---~DlV-ittGG~g~~~~ 77 (172)
T 3kbq_A 23 TNAAFIGNFLT-YHGYQVRRGFVVMD---------DLDEIGWAFRVALEV---SDLV-VSSGGLGPTFD 77 (172)
T ss_dssp HHHHHHHHHHH-HTTCEEEEEEEECS---------CHHHHHHHHHHHHHH---CSEE-EEESCCSSSTT
T ss_pred HHHHHHHHHHH-HCCCEEEEEEEeCC---------CHHHHHHHHHHHHhc---CCEE-EEcCCCcCCcc
Confidence 44557888886 58998877778877 578999999887765 5655 44555555444
No 42
>3eop_A Thymocyte nuclear protein 1; unknown function, nucleus, phosphoprotein; 2.30A {Homo sapiens} SCOP: b.122.1.0
Probab=29.77 E-value=37 Score=27.13 Aligned_cols=16 Identities=25% Similarity=0.503 Sum_probs=13.5
Q ss_pred HhCCCCCEEEEEEecC
Q 025578 114 NDCRKGDSLVFYFSGH 129 (250)
Q Consensus 114 ~~~~~~D~v~~yfSGH 129 (250)
+..+.||.+|||=|+-
T Consensus 50 R~Mk~GD~~fFYHSnc 65 (176)
T 3eop_A 50 RAMKLGEEAFFYHSNC 65 (176)
T ss_dssp HHCCTTCEEEEEECCS
T ss_pred HhcCCCCEEEEEecCC
Confidence 3478999999999983
No 43
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=29.47 E-value=1.6e+02 Score=25.21 Aligned_cols=56 Identities=14% Similarity=0.074 Sum_probs=30.5
Q ss_pred CcHHHHHHHHHHHHhhcCCC-cccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecCC
Q 025578 63 GTINDVRNMRDLLINSFKFQ-EEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHG 130 (250)
Q Consensus 63 ~a~~Da~~~~~~L~~~~G~~-~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG 130 (250)
|...=.+++++++....+.. +++|. +++. ..+.|..++..+ ++|||.|++--.+|.
T Consensus 81 g~~~lr~~ia~~~~~~~~~~~~~~i~-~t~g--------~~~al~~~~~~l---~~~gd~Vl~~~p~~~ 137 (418)
T 3rq1_A 81 GIPDFLCAAEKECFGNFRPEGHIRSI-ATAG--------GTGGIHHLIHNY---TEPGDEVLTADWYWG 137 (418)
T ss_dssp CCHHHHHHHHHHHHGGGCCSSEEEEE-EESH--------HHHHHHHHHHHH---SCTTCEEEEESSCCT
T ss_pred ChHHHHHHHHHHHhcccCccccccEE-ECCc--------hHHHHHHHHHHh---cCCCCEEEECCCCch
Confidence 34344556677775444432 11444 3443 345555555544 578999988644444
No 44
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=28.11 E-value=1.2e+02 Score=25.43 Aligned_cols=48 Identities=4% Similarity=0.058 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhcCCCcc-cEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEE
Q 025578 67 DVRNMRDLLINSFKFQEE-GIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFY 125 (250)
Q Consensus 67 Da~~~~~~L~~~~G~~~~-~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~y 125 (250)
-.+.+++.+.+.+|.+++ ++.++++. ..+.+...+..+ ++|||.|++.
T Consensus 50 ~~~~~~~~la~~~g~~~~~~~i~~t~g--------~t~a~~~~~~~l---~~~gd~vl~~ 98 (362)
T 2c0r_A 50 VHNEAQARLLALLGNPTGYKVLFIQGG--------ASTQFAMIPMNF---LKEGQTANYV 98 (362)
T ss_dssp HHHHHHHHHHHHTTCCSSEEEEEESSH--------HHHHHHHHHHHH---CCTTCEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEECCC--------chHHHHHHHHhc---CCCCCeEEEE
Confidence 456778888777898764 67677664 345555555555 4689987654
No 45
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=28.06 E-value=2.6e+02 Score=23.25 Aligned_cols=53 Identities=11% Similarity=0.101 Sum_probs=31.6
Q ss_pred HHHHHHHHHhhcCC-CcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecCCcc
Q 025578 68 VRNMRDLLINSFKF-QEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLR 132 (250)
Q Consensus 68 a~~~~~~L~~~~G~-~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~ 132 (250)
...+++.|.+.+|. ++++|.+- +. +.+.+..++..+ .++||.|++---+|...
T Consensus 69 ~~~l~~~la~~~g~~~~~~i~~~-~g--------~t~a~~~~~~~~---~~~gd~Vl~~~~~~~~~ 122 (367)
T 3euc_A 69 SEALRAKLKEVMQVPAGMEVLLG-NG--------SDEIISMLALAA---ARPGAKVMAPVPGFVMY 122 (367)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEE-EH--------HHHHHHHHHHHT---CCTTCEEEEEESCSCCS
T ss_pred HHHHHHHHHHHhCCCCcceEEEc-CC--------HHHHHHHHHHHH---cCCCCEEEEcCCCHHHH
Confidence 34667777666677 55566543 32 344454444443 57899988876666543
No 46
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=27.28 E-value=1.5e+02 Score=25.19 Aligned_cols=55 Identities=11% Similarity=-0.011 Sum_probs=32.5
Q ss_pred cHHHHHHHHHHHHhhcC--CCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecCC
Q 025578 64 TINDVRNMRDLLINSFK--FQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHG 130 (250)
Q Consensus 64 a~~Da~~~~~~L~~~~G--~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG 130 (250)
...=-+.+++++.+.+| .++++|.+. +. +.+.+..++..+ .++||.|++.--+|.
T Consensus 77 ~~~l~~~la~~~~~~~g~~~~~~~v~~t-~g--------~t~a~~~~~~~~---~~~gd~vl~~~p~~~ 133 (407)
T 2zc0_A 77 IPELREELAAFLKKYDHLEVSPENIVIT-IG--------GTGALDLLGRVL---IDPGDVVITENPSYI 133 (407)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCGGGEEEE-SH--------HHHHHHHHHHHH---CCTTCEEEEEESCCH
T ss_pred CHHHHHHHHHHHHHhcCCCCCcceEEEe-cC--------HHHHHHHHHHHh---cCCCCEEEEeCCChH
Confidence 33444567777765557 456676544 32 345555555555 468998887655554
No 47
>4es1_A BH0342 protein; ferredoxin, nuclease, hydrolase; 1.10A {Bacillus halodurans} PDB: 4es2_A 4es3_A
Probab=26.97 E-value=1.1e+02 Score=21.77 Aligned_cols=57 Identities=12% Similarity=0.106 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCC-CCCEEEEEEecCCcc
Q 025578 67 DVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCR-KGDSLVFYFSGHGLR 132 (250)
Q Consensus 67 Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~-~~D~v~~yfSGHG~~ 132 (250)
=...++++|+ .+|....+-.+.-. .|.+++.+-...+..-+. ..|.|.||.-|-...
T Consensus 23 R~~kv~k~~~-~yg~rvQ~SVFe~~--------lt~~~~~~L~~~l~~~id~~~Dsv~iy~l~~~~~ 80 (100)
T 4es1_A 23 RLRKVAKACQ-NYGQRVQNSVFECI--------VDSTQLTSLKLELTSLIDEEKDSLRIYRLGNNYK 80 (100)
T ss_dssp HHHHHHHHHH-TTEEEEETTEEEEE--------ECHHHHHHHHHHHHHHSCTTTCEEEEEEECCCSS
T ss_pred HHHHHHHHHH-HhChhheeeEEEEE--------cCHHHHHHHHHHHHhhcCCCCCEEEEEEcCCCcc
Confidence 3557788886 46644333111111 355555554445544454 469999999875433
No 48
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=26.90 E-value=1.1e+02 Score=26.36 Aligned_cols=58 Identities=22% Similarity=0.310 Sum_probs=34.3
Q ss_pred cHHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEe
Q 025578 64 TINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFS 127 (250)
Q Consensus 64 a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfS 127 (250)
+.+=|....+.+.+..||.+-.+.. .+... -+...+.+.+..++..++++|.+++++-
T Consensus 26 a~~ka~~dv~~i~~~~G~~~l~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~DvIi~q~P 83 (339)
T 3rhz_A 26 TAQLCQNTVTDVAVSLGYRELGIYC-YQIHT-----DSESELSKRLDGIVAGLRHGDVVIFQTP 83 (339)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEC-CCGGG-----SCHHHHHHHHHHHTTTCCTTCEEEEEEC
T ss_pred hHHHHHHHHHHHHHHCCCeEEEeec-ccccc-----ccHHHHHHHHHHHHhcCCCCCEEEEeCC
Confidence 3333333333333467998633321 12110 1457788788888889999999988774
No 49
>3oq2_A Crispr-associated protein CAS2; ferredoxin fold, immune system; HET: TRS CIT; 1.35A {Desulfovibrio vulgaris}
Probab=26.63 E-value=1.1e+02 Score=21.85 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhhcCCCccc-EEEecCCccCCCCcccHHHHHHHHHHHHHhCCC-CCEEEEEEecCC
Q 025578 66 NDVRNMRDLLINSFKFQEEG-IIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRK-GDSLVFYFSGHG 130 (250)
Q Consensus 66 ~Da~~~~~~L~~~~G~~~~~-i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~-~D~v~~yfSGHG 130 (250)
.-...+++.|+ .+|....+ |..- . .|.++..+....+..-+.| .|.|.||.-+-.
T Consensus 25 kr~~kv~k~l~-~yG~rvQ~SVFe~-~--------lt~~~~~~L~~~L~~~id~~~Dsv~iy~l~~~ 81 (103)
T 3oq2_A 25 RRLRRIAKACQ-DYGQRVQYSVFEC-V--------VDPAQWAKLKHRLLSEMDKEKDCLRFYYLGAN 81 (103)
T ss_dssp HHHHHHHHHHG-GGEEEEETTEEEE-E--------ECHHHHHHHHHHHHHHSCTTTCEEEEEEEETT
T ss_pred HHHHHHHHHHH-HhCccceEEEEEE-E--------cCHHHHHHHHHHHHHhcCCCCCEEEEEEeCcc
Confidence 45677888886 46643322 2221 1 2566666555555555654 799988887644
No 50
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=26.07 E-value=73 Score=27.10 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=19.9
Q ss_pred ccHHHHHHHHHHHHHhCCCCCEEEEEEe
Q 025578 100 PTKKNIQKALEWLVNDCRKGDSLVFYFS 127 (250)
Q Consensus 100 pT~~~I~~~l~~l~~~~~~~D~v~~yfS 127 (250)
.|++.|.+.|+.| .+++||+|+|+=|
T Consensus 15 ~t~~~l~~~L~~L--Gi~~Gd~llVHsS 40 (268)
T 3ijw_A 15 NTIKTITNDLRKL--GLKKGMTVIVHSS 40 (268)
T ss_dssp BCHHHHHHHHHHH--TCCTTCEEEEEEC
T ss_pred cCHHHHHHHHHHc--CCCCCCEEEEEec
Confidence 4788888888776 4778888888765
No 51
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=25.59 E-value=2.4e+02 Score=23.14 Aligned_cols=56 Identities=9% Similarity=0.016 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecCCcc
Q 025578 65 INDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLR 132 (250)
Q Consensus 65 ~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~ 132 (250)
..-...+++.|.+.+|.++++|.+..+ ..+.+..++..+ .++||.|++.=-+|...
T Consensus 48 ~~~~~~~~~~l~~~~g~~~~~v~~~~g---------~t~a~~~~~~~~---~~~gd~vl~~~~~~~~~ 103 (359)
T 1svv_A 48 DSHCAKAARLIGELLERPDADVHFISG---------GTQTNLIACSLA---LRPWEAVIATQLGHIST 103 (359)
T ss_dssp SHHHHHHHHHHHHHHTCTTSEEEEESC---------HHHHHHHHHHHH---CCTTEEEEEETTSHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCccEEEeCC---------chHHHHHHHHHH---hCCCCEEEEcccchHHH
Confidence 345667888887777877777655443 345566666555 45899888765555433
No 52
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=25.51 E-value=1.8e+02 Score=24.67 Aligned_cols=57 Identities=14% Similarity=0.181 Sum_probs=34.6
Q ss_pred CcHHHHHHHHHHHHhhcCC--CcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecCCc
Q 025578 63 GTINDVRNMRDLLINSFKF--QEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGL 131 (250)
Q Consensus 63 ~a~~Da~~~~~~L~~~~G~--~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~ 131 (250)
+...=-+.+++++.+.+|. ++++|.+..+ ..+.+..++..+ .++||.|++-=-+|..
T Consensus 79 g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g---------~t~al~~~~~~l---~~~gd~Vl~~~~~~~~ 137 (389)
T 1o4s_A 79 GIYELREGIAKRIGERYKKDISPDQVVVTNG---------AKQALFNAFMAL---LDPGDEVIVFSPVWVS 137 (389)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCCGGGEEEESH---------HHHHHHHHHHHH---CCTTCEEEEEESCCTT
T ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHEEEecC---------HHHHHHHHHHHh---CCCCCEEEEcCCCchh
Confidence 3334445677777655575 5677755433 345555555554 5689988887666644
No 53
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=24.53 E-value=84 Score=26.28 Aligned_cols=51 Identities=12% Similarity=0.149 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHH-hCCCCCEEEEE
Q 025578 66 NDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVN-DCRKGDSLVFY 125 (250)
Q Consensus 66 ~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~-~~~~~D~v~~y 125 (250)
.-...+++.|.+.+|.++++|.+..+ ..+.+..++..+.. ..++||.|++-
T Consensus 43 ~~~~~~~~~la~~~~~~~~~i~~~~g---------~~~a~~~~~~~~~~~~~~~gd~vi~~ 94 (382)
T 4hvk_A 43 EAVQEAREKVAKLVNGGGGTVVFTSG---------ATEANNLAIIGYAMRNARKGKHILVS 94 (382)
T ss_dssp HHHHHHHHHHHHHTTCTTEEEEEESS---------HHHHHHHHHHHHHHHHGGGCCEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcCeEEEECC---------chHHHHHHHHHhhhhhcCCCCEEEEC
Confidence 44557778887778887777655443 34455555555542 22589998884
No 54
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=24.27 E-value=2e+02 Score=24.03 Aligned_cols=51 Identities=12% Similarity=0.119 Sum_probs=33.3
Q ss_pred HHHHHHHHhhc-CCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecCCc
Q 025578 69 RNMRDLLINSF-KFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGL 131 (250)
Q Consensus 69 ~~~~~~L~~~~-G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~ 131 (250)
..+++.+.+.+ +..+++|.+..+ ..+.+..++..+ .++||.|++.--+|..
T Consensus 66 ~~l~~~la~~~~~~~~~~v~~~~g---------~~~a~~~~~~~l---~~~gd~Vl~~~~~~~~ 117 (375)
T 3op7_A 66 PAFKKSVSQLYTGVKPEQILQTNG---------ATGANLLVLYSL---IEPGDHVISLYPTYQQ 117 (375)
T ss_dssp HHHHHHHHTTSSSCCGGGEEEESH---------HHHHHHHHHHHH---CCTTCEEEEEESSCTH
T ss_pred HHHHHHHHHHhccCChhhEEEcCC---------hHHHHHHHHHHh---cCCCCEEEEeCCCchh
Confidence 35777776544 567778755433 345555555554 5799999988777764
No 55
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=23.96 E-value=1.9e+02 Score=24.45 Aligned_cols=56 Identities=14% Similarity=0.103 Sum_probs=34.3
Q ss_pred CcHHHHHHHHHHHHhhcCC--CcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecCC
Q 025578 63 GTINDVRNMRDLLINSFKF--QEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHG 130 (250)
Q Consensus 63 ~a~~Da~~~~~~L~~~~G~--~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG 130 (250)
+...=.+.+++++.+.+|. ++++|.+..+ +.+.+..++..+ .++||.|++.--+|.
T Consensus 68 g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g---------~~~a~~~~~~~~---~~~gd~vl~~~~~~~ 125 (388)
T 1j32_A 68 GEPRLREAIAQKLQRDNGLCYGADNILVTNG---------GKQSIFNLMLAM---IEPGDEVIIPAPFWV 125 (388)
T ss_dssp CCHHHHHHHHHHHHHHHCCCCCGGGEEEESH---------HHHHHHHHHHHH---CCTTCEEEEESSCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCChhhEEEcCC---------HHHHHHHHHHHh---cCCCCEEEEcCCCCh
Confidence 3444445677788665664 5667655433 345566666555 568998887655554
No 56
>1xho_A Chorismate mutase; southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI, structural genomics; 2.20A {Clostridium thermocellum} SCOP: d.79.1.2
Probab=23.83 E-value=78 Score=24.45 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=22.8
Q ss_pred cHHHHHHHHHHHHH------hCCCCCEEEEEEec
Q 025578 101 TKKNIQKALEWLVN------DCRKGDSLVFYFSG 128 (250)
Q Consensus 101 T~~~I~~~l~~l~~------~~~~~D~v~~yfSG 128 (250)
|+++|.++..+|++ ++++.|++-++|+-
T Consensus 45 t~e~I~~At~ELl~eii~~N~l~~eDIvSv~FTv 78 (148)
T 1xho_A 45 TADEIVAETQKLLKEMAEKNGLEEDDIISIIFTV 78 (148)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEe
Confidence 78899888776654 37899999999984
No 57
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=23.67 E-value=3.9e+02 Score=23.77 Aligned_cols=52 Identities=6% Similarity=-0.049 Sum_probs=28.5
Q ss_pred HHHHHHHhhcCCCccc--EEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecCCcc
Q 025578 70 NMRDLLINSFKFQEEG--IIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLR 132 (250)
Q Consensus 70 ~~~~~L~~~~G~~~~~--i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~ 132 (250)
..++.+.+.+|.+.++ ..++.... + ..+..++..+ ++|||.|++-=-.||..
T Consensus 94 ~~~~~~a~~~g~~~~~~~~~V~~~sG-------s-~an~~~~~al---l~pGD~Vl~~~~~~~~~ 147 (483)
T 1rv3_A 94 LCQKRALQAYGLDPQCWGVNVQPYSG-------S-PANFAVYTAL---VEPHGRIMGLDLPDGGH 147 (483)
T ss_dssp HHHHHHHHHTTCCTTTEEEECCCSSH-------H-HHHHHHHHHH---TCTTCEEEEECGGGTCC
T ss_pred HHHHHHHHHhCCCcccCceEEEECCc-------H-HHHHHHHHHh---cCCCCEEEEecCccCcC
Confidence 3446776677876533 22222221 3 3333335444 67999988875555543
No 58
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=22.66 E-value=1.5e+02 Score=23.51 Aligned_cols=52 Identities=23% Similarity=0.314 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecCCcc
Q 025578 68 VRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLR 132 (250)
Q Consensus 68 a~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~ 132 (250)
...++++|+ ..|+......++.| ..+.|.++|++.+. +.-|.|+ ---|=|..
T Consensus 51 ~~~L~~~L~-~~G~~v~~~~iv~D---------d~~~I~~al~~a~~--~~~DlVI-ttGGts~g 102 (185)
T 3rfq_A 51 GPLVTELLT-EAGFVVDGVVAVEA---------DEVDIRNALNTAVI--GGVDLVV-SVGGTGVT 102 (185)
T ss_dssp HHHHHHHHH-HTTEEEEEEEEECS---------CHHHHHHHHHHHHH--TTCSEEE-EESCCSSS
T ss_pred HHHHHHHHH-HCCCEEEEEEEeCC---------CHHHHHHHHHHHHh--CCCCEEE-ECCCCCCC
Confidence 346888886 58988777777777 47889999987653 2356554 34444433
No 59
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=22.08 E-value=1.8e+02 Score=24.63 Aligned_cols=52 Identities=15% Similarity=0.242 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecC
Q 025578 67 DVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGH 129 (250)
Q Consensus 67 Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGH 129 (250)
-...+++.|.+.+|.+..++.++++. ....+..++..+ .++||.|++.--+|
T Consensus 47 ~~~~~~~~la~~~~~~~~~~v~~~~s--------gt~al~~~~~~~---~~~gd~Vl~~~~~~ 98 (411)
T 3nnk_A 47 YMNEVMALYRGVFRTENRWTMLVDGT--------SRAGIEAILVSA---IRPGDKVLVPVFGR 98 (411)
T ss_dssp HHHHHHHHHHHHHTCCCSEEEEEESC--------HHHHHHHHHHHH---CCTTCEEEEEECSH
T ss_pred HHHHHHHHHHHHhCCCCCcEEEECCC--------cHHHHHHHHHHh---cCCCCEEEEecCCc
Confidence 34667778877778877665566554 345566666555 67999988876665
No 60
>1dbf_A Protein (chorismate mutase); shikimate pathway, isomerase; 1.30A {Bacillus subtilis} SCOP: d.79.1.2 PDB: 1com_A 2chs_A 2cht_A* 1fnj_A 1fnk_A
Probab=21.99 E-value=92 Score=23.46 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHHHH------hCCCCCEEEEEEecC
Q 025578 101 TKKNIQKALEWLVN------DCRKGDSLVFYFSGH 129 (250)
Q Consensus 101 T~~~I~~~l~~l~~------~~~~~D~v~~yfSGH 129 (250)
|+++|.++..+|+. ++++.|++-++||--
T Consensus 16 t~e~I~~at~eLl~~i~~~N~l~~~dIvSv~FT~T 50 (127)
T 1dbf_A 16 TEEEILQKTKQLLEKIIEENHTKPEDVVQMLLSAT 50 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeC
Confidence 78888888776654 488999999999853
No 61
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=21.89 E-value=1.7e+02 Score=22.42 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecCCccc
Q 025578 66 NDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQ 133 (250)
Q Consensus 66 ~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~ 133 (250)
.....+++.|. ..|+......++.| ..+.|.++|++.++. ...|.| |.--|=|...
T Consensus 31 sn~~~l~~~L~-~~G~~v~~~~iv~D---------d~~~i~~~l~~~~~~-~~~DlV-ittGG~g~g~ 86 (169)
T 1y5e_A 31 KSGQLLHELLK-EAGHKVTSYEIVKD---------DKESIQQAVLAGYHK-EDVDVV-LTNGGTGITK 86 (169)
T ss_dssp HHHHHHHHHHH-HHTCEEEEEEEECS---------SHHHHHHHHHHHHTC-TTCSEE-EEECCCSSST
T ss_pred ChHHHHHHHHH-HCCCeEeEEEEeCC---------CHHHHHHHHHHHHhc-CCCCEE-EEcCCCCCCC
Confidence 33456888886 57998777777777 578999999887641 134644 4444444443
No 62
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=21.75 E-value=82 Score=26.77 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=22.5
Q ss_pred ccHHHHHHHHHHHHHhCCCCCEEEEEEe
Q 025578 100 PTKKNIQKALEWLVNDCRKGDSLVFYFS 127 (250)
Q Consensus 100 pT~~~I~~~l~~l~~~~~~~D~v~~yfS 127 (250)
.|++.|.+.|+.| .+++||+|+|+=|
T Consensus 13 ~T~~~L~~~L~~L--GI~~Gd~llVHsS 38 (273)
T 2nyg_A 13 RTKQSITEDLKAL--GLKKGMTVLVHSS 38 (273)
T ss_dssp BCHHHHHHHHHHH--TCCTTCEEEEEEC
T ss_pred cCHHHHHHHHHHc--CCCCCCEEEEEec
Confidence 5999999999887 5889999999865
No 63
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=21.69 E-value=83 Score=27.04 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=23.4
Q ss_pred cccHHHHHHHHHHHHHhCCCCCEEEEEEe
Q 025578 99 SPTKKNIQKALEWLVNDCRKGDSLVFYFS 127 (250)
Q Consensus 99 ~pT~~~I~~~l~~l~~~~~~~D~v~~yfS 127 (250)
..|++.|.+.|+.| .+++||+|+|+=|
T Consensus 21 ~~T~~~L~~~L~~L--GI~~Gd~llVHsS 47 (286)
T 3sma_A 21 LVTRDRLASDLAAL--GVRPGGVLLVHAS 47 (286)
T ss_dssp EECHHHHHHHHHHH--TCCTTCEEEEEEC
T ss_pred CcCHHHHHHHHHHc--CCCCCCEEEEEec
Confidence 46999999999988 5889999999875
No 64
>2gm5_A Transposon gamma-delta resolvase; site specific recombination, recombin; 2.10A {Escherichia coli} PDB: 2rsl_A 1gdr_A 1ght_A 1hx7_A
Probab=21.65 E-value=1.3e+02 Score=22.34 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEE
Q 025578 67 DVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFY 125 (250)
Q Consensus 67 Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~y 125 (250)
+.+.-.+.|++ .||....+..=.... +..+ +..|..|++.+++||.|+++
T Consensus 14 ~l~~Q~~~l~~-~g~~~~~~~~D~~Sg-------~~~~-Rp~l~~ll~~~~~gd~lvV~ 63 (139)
T 2gm5_A 14 SLDIQVRALKD-AGVKANRIFTDKASG-------SSSD-RKGLDLLRMKVKEGDVILVK 63 (139)
T ss_dssp HHHHHHHHHHH-TTCCGGGEEEEEC------------C-CHHHHHHHHHCCTTCEEEES
T ss_pred CHHHHHHHHHH-CCCceeEEEEECCCC-------Cccc-cHHHHHHHHHHHCCCEEEEE
Confidence 45555666654 788765554322211 1112 56778888888999977664
No 65
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*
Probab=21.06 E-value=2.2e+02 Score=23.85 Aligned_cols=32 Identities=13% Similarity=-0.071 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEEecCCcccC
Q 025578 103 KNIQKALEWLVNDCRKGDSLVFYFSGHGLRQP 134 (250)
Q Consensus 103 ~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~~ 134 (250)
..-..++.++..+..+++.+++..+|||....
T Consensus 269 a~alaa~~~~~~~~~~~~~vv~i~tg~g~ky~ 300 (303)
T 1o58_A 269 GANVAAALKVAQKLGPDARVVTVAPDHAERYL 300 (303)
T ss_dssp HHHHHHHHHHHHTSCTTCCEEEEECBBGGGCT
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEECCCCcccc
Confidence 33344444455556678999999999998764
No 66
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=20.62 E-value=2.2e+02 Score=23.71 Aligned_cols=58 Identities=10% Similarity=-0.058 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHh----------CCCCCEEEEEEecCCcc
Q 025578 66 NDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVND----------CRKGDSLVFYFSGHGLR 132 (250)
Q Consensus 66 ~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~----------~~~~D~v~~yfSGHG~~ 132 (250)
.-...+++.|.+.+|.++++|.+..+ ..+.+..++..+... .+++|.|++--.+|+..
T Consensus 69 ~~~~~l~~~la~~~~~~~~~i~~~~g---------gt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~ 136 (397)
T 3f9t_A 69 LLEEKAVALLGSLLNNKDAYGHIVSG---------GTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSF 136 (397)
T ss_dssp HHHHHHHHHHHHHTTCTTCEEEEESC---------HHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHH
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEecC---------cHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHH
Confidence 33346778887778988877765444 344556666555442 34699999988888754
No 67
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=20.47 E-value=2.5e+02 Score=22.27 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=33.3
Q ss_pred HHHHHHHhhcCCC--cccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEecCCccc
Q 025578 70 NMRDLLINSFKFQ--EEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQ 133 (250)
Q Consensus 70 ~~~~~L~~~~G~~--~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~ 133 (250)
.++++|. ..|+. .....++.| ..+.|.++|++++++. ..|.| |---|=|...
T Consensus 27 ~L~~~L~-~~G~~~~v~~~~iV~D---------d~~~I~~al~~a~~~~-~~DlV-itTGGtg~g~ 80 (195)
T 1di6_A 27 ALEEWLT-SALTTPFELETRLIPD---------EQAIIEQTLCELVDEM-SCHLV-LTTGGTGPAR 80 (195)
T ss_dssp HHHHHHH-HHBCSCEEEEEEEEES---------CHHHHHHHHHHHHHTS-CCSEE-EEESCCSSST
T ss_pred HHHHHHH-HcCCCCceEEEEEeCC---------CHHHHHHHHHHHHhcC-CCCEE-EECCCCCCCC
Confidence 6888886 47776 445566766 5789999998876531 24665 4444444443
No 68
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=20.25 E-value=2.4e+02 Score=23.51 Aligned_cols=34 Identities=6% Similarity=0.005 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHHHHhCCCCCEEEEEEecCCcccCC
Q 025578 101 TKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPD 135 (250)
Q Consensus 101 T~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~~~ 135 (250)
+...+.. +.++..+..+++.+++..+|||....+
T Consensus 264 sa~a~aa-~~~~~~~~~~~~~vv~i~tg~g~ky~~ 297 (304)
T 1ve1_A 264 SGGIVWA-ALQVARELGPGKRVACISPDGGWKYLS 297 (304)
T ss_dssp HHHHHHH-HHHHHHHHCTTCEEEEEECBBSGGGTT
T ss_pred HHHHHHH-HHHHHHhcCCCCeEEEEECCCCccCCC
Confidence 3344433 334444455789999999999988754
No 69
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=20.13 E-value=2.8e+02 Score=20.83 Aligned_cols=60 Identities=17% Similarity=0.177 Sum_probs=35.0
Q ss_pred eEEEEEeecCCCCCCCCcCcHHHHHHHHHHHHhhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEE
Q 025578 45 RRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVF 124 (250)
Q Consensus 45 ~~ALlIGi~Y~~~~~~L~~a~~Da~~~~~~L~~~~G~~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~~D~v~~ 124 (250)
++.+++|++. +..-|..++..|. +.|.+ +..+... ...+ .......+++|.+ |
T Consensus 40 ~~I~i~G~G~---------S~~~a~~~~~~l~-~~g~~---~~~~~~~---------~~~~----~~~~~~~~~~d~~-i 92 (187)
T 3sho_A 40 DHVIVVGMGF---------SAAVAVFLGHGLN-SLGIR---TTVLTEG---------GSTL----TITLANLRPTDLM-I 92 (187)
T ss_dssp SEEEEECCGG---------GHHHHHHHHHHHH-HTTCC---EEEECCC---------THHH----HHHHHTCCTTEEE-E
T ss_pred CEEEEEecCc---------hHHHHHHHHHHHH-hcCCC---EEEecCC---------chhH----HHHHhcCCCCCEE-E
Confidence 5888899882 3366777888885 57766 4566521 1111 1223457777754 5
Q ss_pred EEecCCc
Q 025578 125 YFSGHGL 131 (250)
Q Consensus 125 yfSGHG~ 131 (250)
.+|--|.
T Consensus 93 ~iS~sG~ 99 (187)
T 3sho_A 93 GVSVWRY 99 (187)
T ss_dssp EECCSSC
T ss_pred EEeCCCC
Confidence 5665443
No 70
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=20.05 E-value=2.7e+02 Score=23.16 Aligned_cols=58 Identities=9% Similarity=0.054 Sum_probs=37.9
Q ss_pred cCcHHHHHHHHHHHHhhcCC--CcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCC--CCEEEEEEecCCc
Q 025578 62 KGTINDVRNMRDLLINSFKF--QEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRK--GDSLVFYFSGHGL 131 (250)
Q Consensus 62 ~~a~~Da~~~~~~L~~~~G~--~~~~i~~L~d~~a~~~~~pT~~~I~~~l~~l~~~~~~--~D~v~~yfSGHG~ 131 (250)
.+...=.+.++++|.+.+|. ++++|.+-.+ +.+.+..++..+ .++ ||.|++.--+|..
T Consensus 59 ~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g---------~~~al~~~~~~~---~~~~~gd~vl~~~p~~~~ 120 (376)
T 3ezs_A 59 AFEESLRAAQRGFFKRRFKIELKENELISTLG---------SREVLFNFPSFV---LFDYQNPTIAYPNPFYQI 120 (376)
T ss_dssp TCCHHHHHHHHHHHHHHHSCCCCGGGEEEESS---------SHHHHHHHHHHH---TTTCSSCEEEEEESCCTH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHEEECcC---------cHHHHHHHHHHH---cCCCCCCEEEEecCCcHh
Confidence 34444556788888766676 6778765444 455666666555 457 9999887766653
Done!