BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025580
(250 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PW6|A Chain A, Crystal Structure Of Uncharacterized Protein Jw3007 From
Escherichia Coli K12
Length = 271
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 114/194 (58%), Gaps = 8/194 (4%)
Query: 55 FFISHGSPTLSIDESLPARGFLQAWQAKVFS-QRPNSILVISAHWDTDFPSVNVVQRNDT 113
F+ HGSP ++++L + ++WQ + RP +I+V+SAHW T V + T
Sbjct: 18 LFLGHGSPXNVLEDNL----YTRSWQKLGXTLPRPQAIVVVSAHWFTRGTGVTAXETPPT 73
Query: 114 IHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMY 173
IHDF GFP+ +YD YPAPG+P LA+R+ +LL I + G DHG+W L+ Y
Sbjct: 74 IHDFGGFPQALYDTHYPAPGSPALAQRLVELLAP--IPVTLDKEAWGFDHGSWGVLIKXY 131
Query: 174 PEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRALQFES-SSIS 232
P+ADIP QLS+ +H+ G+ LA L++EG+ ++ SG+ HNLR +++ SS
Sbjct: 132 PDADIPXVQLSIDSSKPAAWHFEXGRKLAALRDEGIXLVASGNVVHNLRTVKWHGDSSPY 191
Query: 233 SWALEFDNWLKDAL 246
WA F+ ++K L
Sbjct: 192 PWATSFNEYVKANL 205
>pdb|2EGY|A Chain A, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Substrate Free Form), From Thermus
Thermophilus Hb27
pdb|2EGY|B Chain B, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Substrate Free Form), From Thermus
Thermophilus Hb27
pdb|2EGY|C Chain C, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Substrate Free Form), From Thermus
Thermophilus Hb27
pdb|2EGY|D Chain D, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Substrate Free Form), From Thermus
Thermophilus Hb27
pdb|2ZP7|C Chain C, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Leucine Complex), From Thermus
Thermophilus Hb27
pdb|2ZP7|D Chain D, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Leucine Complex), From Thermus
Thermophilus Hb27
pdb|2ZP7|F Chain F, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Leucine Complex), From Thermus
Thermophilus Hb27
pdb|3CBF|A Chain A, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase, From Thermus Thermophilus Hb27
pdb|3CBF|B Chain B, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase, From Thermus Thermophilus Hb27
pdb|2Z1Y|A Chain A, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Complexed With
N-(5'-Phosphopyridoxyl)-L-Leucine), From Thermus
Thermophilus Hb27
pdb|2Z1Y|B Chain B, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Complexed With
N-(5'-Phosphopyridoxyl)-L-Leucine), From Thermus
Thermophilus Hb27
pdb|2ZP7|A Chain A, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Leucine Complex), From Thermus
Thermophilus Hb27
pdb|2ZP7|B Chain B, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Leucine Complex), From Thermus
Thermophilus Hb27
pdb|2ZP7|E Chain E, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Leucine Complex), From Thermus
Thermophilus Hb27
pdb|2ZYJ|A Chain A, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate), From Thermus
Thermophilus Hb27
pdb|2ZYJ|B Chain B, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate), From Thermus
Thermophilus Hb27
Length = 397
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 66/166 (39%), Gaps = 24/166 (14%)
Query: 42 TRGQQSRLSVMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTD 101
T G Q L ++ F+ GSP L L A ++ A QA Q P + V + D
Sbjct: 97 TTGSQQALDLVGKVFLDEGSPVL-----LEAPSYMGAIQAFRL-QGPRFLTVPAGEEGPD 150
Query: 102 FPSVNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELA--KRVKDLLKASGIKHVNEDRKR 159
++ V + + Y P + P G L KR+ ++ G+ V +D R
Sbjct: 151 LDALEEVLKRERPRFLYLIP----SFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYR 206
Query: 160 GLDHGAWVPLMLMYPEADIP-VCQLSVQMHHTGT-YHYNIGKALAP 203
L G EA +P + +L+ + + G Y + K L+P
Sbjct: 207 ELYFG----------EARLPSLFELAREAGYPGVIYLGSFSKVLSP 242
>pdb|3VSG|B Chain B, Crystal Structure Of Iron Free 1,6-apd,
2-animophenol-1,6-dioxygenase
pdb|3VSG|D Chain D, Crystal Structure Of Iron Free 1,6-apd,
2-animophenol-1,6-dioxygenase
pdb|3VSH|B Chain B, Crystal Structure Of Native 1,6-apd (with Iron),
2-animophenol-1,6- Dioxygenase
pdb|3VSH|D Chain D, Crystal Structure Of Native 1,6-apd (with Iron),
2-animophenol-1,6- Dioxygenase
pdb|3VSI|B Chain B, Crystal Structure Of Native 1,6-apd
(2-animophenol-1,6-dioxygenase) Complex With
4-nitrocatechol
pdb|3VSI|D Chain D, Crystal Structure Of Native 1,6-apd
(2-animophenol-1,6-dioxygenase) Complex With
4-nitrocatechol
pdb|3VSJ|B Chain B, Crystal Structure Of 1,6-apd
(2-animophenol-1,6-dioxygenase) Complexed With
Intermediate Products
pdb|3VSJ|D Chain D, Crystal Structure Of 1,6-apd
(2-animophenol-1,6-dioxygenase) Complexed With
Intermediate Products
Length = 312
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 72/169 (42%), Gaps = 31/169 (18%)
Query: 80 QAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPK-----------QMYDLK 128
+ ++ + +P+ +LV S HW T SV H F G P+ ++
Sbjct: 45 RERLDAMKPDVLLVHSPHWIT---SVG--------HHFLGVPELSGKSVDPIFPNVFRYD 93
Query: 129 YPAPGAPELAKRVKDLLKASG-IKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQM 187
+ ELA+ + + +G + + + K +D+G L L+ P+ DIPV +S
Sbjct: 94 FSLNVDVELAEACAEEGRKAGLVTKMMRNPKFRVDYGTITTLHLIRPQWDIPVVGISA-- 151
Query: 188 HHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNL--RALQFESSSISSW 234
+ Y+ N + ++ E VL + A +A+ S+++S W
Sbjct: 152 -NNSPYYLNTKEGMS---EMDVLGKATREAIRKTGRKAVLLASNTLSHW 196
>pdb|2FA8|A Chain A, Crystal Structure Of The Putative Selenoprotein W-Related
Family Protein From Agrobacterium Tumefaciens
pdb|2FA8|B Chain B, Crystal Structure Of The Putative Selenoprotein W-Related
Family Protein From Agrobacterium Tumefaciens
pdb|2FA8|C Chain C, Crystal Structure Of The Putative Selenoprotein W-Related
Family Protein From Agrobacterium Tumefaciens
pdb|2FA8|D Chain D, Crystal Structure Of The Putative Selenoprotein W-Related
Family Protein From Agrobacterium Tumefaciens
Length = 105
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 132 PGAPELAKRVKDLLK-ASGIKHVNEDRKRGLDHGA 165
PG EL +R++DL+ + HV+ + GLD G+
Sbjct: 71 PGPKELKQRIRDLIDPERDLGHVDRTKHEGLDTGS 105
>pdb|2H6C|A Chain A, Crystal Structure Of Reduced Cprk In Absence Of Any Ligand
pdb|2H6C|B Chain B, Crystal Structure Of Reduced Cprk In Absence Of Any Ligand
Length = 232
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 175 EADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVL 210
E +P+ Q S+ TG +H + K LA LK+E +L
Sbjct: 173 EITMPLSQKSIG-EITGAHHVTVSKVLACLKKENIL 207
>pdb|3I2V|A Chain A, Crystal Structure Of Human Mocs3 Rhodanese-Like Domain
Length = 127
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 156 DRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMH 188
D KR LD GA+ L+ + P+ ++ +C+L +H
Sbjct: 7 DYKRLLDSGAFHLLLDVRPQVEVDICRLPHALH 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,887,960
Number of Sequences: 62578
Number of extensions: 323519
Number of successful extensions: 818
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 815
Number of HSP's gapped (non-prelim): 10
length of query: 250
length of database: 14,973,337
effective HSP length: 96
effective length of query: 154
effective length of database: 8,965,849
effective search space: 1380740746
effective search space used: 1380740746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)