Query 025580
Match_columns 250
No_of_seqs 152 out of 1203
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 07:17:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025580.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025580hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3384 Aromatic ring-opening 100.0 4.6E-57 9.9E-62 401.6 16.7 194 51-247 8-202 (268)
2 cd07363 45_DOPA_Dioxygenase Th 100.0 1.7E-55 3.6E-60 394.1 20.2 194 53-250 1-195 (253)
3 PRK10628 LigB family dioxygena 100.0 3.3E-53 7.1E-58 377.4 19.0 181 64-249 2-183 (246)
4 PF02900 LigB: Catalytic LigB 100.0 3.3E-50 7.2E-55 361.6 7.4 196 53-250 1-216 (272)
5 TIGR02298 HpaD_Fe 3,4-dihydrox 100.0 2.3E-47 5.1E-52 346.7 20.1 201 48-250 1-221 (282)
6 cd07373 2A5CPDO_A The alpha su 100.0 7.4E-46 1.6E-50 334.9 20.0 189 54-250 5-213 (271)
7 cd07370 HPCD The Class III ext 100.0 2.1E-45 4.5E-50 333.2 20.7 197 52-250 11-219 (280)
8 cd07362 HPCD_like Class III ex 100.0 5.5E-45 1.2E-49 329.6 20.1 194 54-250 3-216 (272)
9 cd07371 2A5CPDO_AB The alpha a 100.0 1.2E-44 2.7E-49 326.5 20.6 194 55-250 3-210 (268)
10 cd07952 ED_3B_like Uncharacter 100.0 5.8E-42 1.3E-46 307.1 18.8 186 54-250 2-201 (256)
11 cd07367 CarBb CarBb is the B s 100.0 1.8E-41 3.9E-46 306.1 18.9 188 48-250 1-209 (268)
12 cd07320 Extradiol_Dioxygenase_ 100.0 1.7E-39 3.6E-44 289.7 16.1 191 54-250 2-203 (260)
13 cd07949 PCA_45_Doxase_B_like_1 100.0 5.6E-39 1.2E-43 291.1 17.9 190 48-250 1-217 (276)
14 cd07372 2A5CPDO_B The beta sub 100.0 1.4E-38 3E-43 290.8 20.3 197 51-250 3-231 (294)
15 cd07364 PCA_45_Dioxygenase_B S 100.0 1.3E-38 2.9E-43 288.8 17.1 191 48-248 1-217 (277)
16 cd07359 PCA_45_Doxase_B_like S 100.0 3.3E-38 7.2E-43 284.2 19.5 187 51-250 2-212 (271)
17 cd07368 PhnC_Bs_like PhnC is a 100.0 4.2E-38 9.2E-43 285.4 16.6 191 48-250 1-218 (277)
18 PRK13366 protocatechuate 4,5-d 100.0 1.1E-37 2.4E-42 283.5 18.3 190 48-248 1-217 (284)
19 PRK13358 protocatechuate 4,5-d 100.0 1.5E-37 3.2E-42 280.2 18.0 188 48-250 1-209 (269)
20 PRK03881 hypothetical protein; 100.0 1.8E-37 3.8E-42 299.2 17.6 192 51-250 3-215 (467)
21 cd07951 ED_3B_N_AMMECR1 The N- 100.0 3.1E-37 6.8E-42 275.4 17.8 187 56-250 1-201 (256)
22 PRK13364 protocatechuate 4,5-d 100.0 7.1E-37 1.5E-41 277.5 18.7 191 48-250 1-217 (278)
23 cd07950 Gallate_Doxase_N The N 100.0 6.2E-37 1.3E-41 277.9 15.6 188 48-247 1-216 (277)
24 cd07369 PydA_Rs_like PydA is a 100.0 1.5E-36 3.3E-41 280.8 18.0 197 48-250 1-270 (329)
25 PRK13372 pcmA protocatechuate 100.0 2.5E-36 5.5E-41 286.1 19.0 187 50-248 150-365 (444)
26 PRK13367 protocatechuate 4,5-d 100.0 2.1E-36 4.5E-41 286.1 16.8 188 48-243 1-216 (420)
27 PRK13365 protocatechuate 4,5-d 100.0 2.2E-35 4.7E-40 268.0 17.5 189 48-247 1-216 (279)
28 PRK13370 mhpB 3-(2,3-dihydroxy 100.0 1.4E-34 3.1E-39 266.3 19.5 188 54-250 5-248 (313)
29 cd07365 MhpB_like Subunit B of 100.0 3.1E-34 6.7E-39 263.8 19.5 189 53-250 4-248 (310)
30 cd07366 3MGA_Dioxygenase Subun 100.0 3.8E-33 8.2E-38 258.2 17.2 167 71-250 70-267 (328)
31 PRK13363 protocatechuate 4,5-d 100.0 4.3E-33 9.3E-38 258.4 17.0 167 71-250 72-271 (335)
32 PRK13373 putative dioxygenase; 100.0 2.8E-31 6.1E-36 244.4 15.6 173 48-222 1-195 (344)
33 COG3885 Uncharacterized conser 99.8 1.7E-18 3.7E-23 151.4 13.5 185 53-250 4-203 (261)
34 cd07361 MEMO_like Memo (mediat 99.8 3.5E-18 7.6E-23 153.9 14.5 166 53-250 37-204 (266)
35 PRK00782 hypothetical protein; 99.6 1.7E-14 3.8E-19 130.3 14.4 160 54-250 39-203 (267)
36 COG1355 Predicted dioxygenase 98.5 5.6E-06 1.2E-10 75.2 15.6 166 52-250 46-216 (279)
37 PF01875 Memo: Memo-like prote 98.4 5.7E-07 1.2E-11 81.8 6.5 149 84-250 58-215 (276)
38 PRK09004 FMN-binding protein M 78.4 12 0.00027 30.6 7.6 76 134-219 15-95 (146)
39 PRK03995 hypothetical protein; 75.7 20 0.00044 32.8 8.8 112 87-217 63-190 (267)
40 PRK05723 flavodoxin; Provision 74.9 17 0.00036 30.1 7.5 78 134-219 14-97 (151)
41 TIGR02017 hutG_amidohyd N-form 73.5 16 0.00035 33.1 7.6 100 74-188 122-226 (263)
42 PF04414 tRNA_deacylase: D-ami 70.1 11 0.00024 33.4 5.6 113 85-217 10-139 (213)
43 PRK08105 flavodoxin; Provision 67.4 31 0.00068 28.3 7.5 78 134-219 15-97 (149)
44 PRK13193 pyrrolidone-carboxyla 63.8 48 0.001 29.1 8.3 81 74-157 47-135 (209)
45 PRK14866 hypothetical protein; 63.3 52 0.0011 32.4 9.2 113 87-217 69-194 (451)
46 PF00258 Flavodoxin_1: Flavodo 60.5 46 0.001 26.2 7.1 96 134-244 10-116 (143)
47 PRK06703 flavodoxin; Provision 52.9 56 0.0012 26.3 6.5 75 134-218 15-94 (151)
48 TIGR01370 cysRS possible cyste 50.2 56 0.0012 30.6 6.8 90 73-162 190-310 (315)
49 PF05013 FGase: N-formylglutam 50.1 30 0.00066 30.1 4.8 99 74-187 114-217 (222)
50 PRK09271 flavodoxin; Provision 50.1 92 0.002 25.5 7.5 80 134-219 14-98 (160)
51 TIGR01931 cysJ sulfite reducta 48.6 62 0.0013 32.8 7.3 78 134-219 72-155 (597)
52 PF06506 PrpR_N: Propionate ca 46.4 29 0.00062 29.1 3.9 100 133-249 17-125 (176)
53 PRK10991 fucI L-fucose isomera 45.7 41 0.00088 34.2 5.3 111 76-215 66-181 (588)
54 TIGR01089 fucI L-fucose isomer 43.0 86 0.0019 31.9 7.1 114 76-214 65-179 (587)
55 cd00501 Peptidase_C15 Pyroglut 42.0 2.2E+02 0.0047 24.2 9.7 109 74-186 47-168 (194)
56 KOG3086 Predicted dioxygenase 40.9 1.2E+02 0.0027 27.8 7.2 146 86-250 67-226 (296)
57 PRK05647 purN phosphoribosylgl 40.3 28 0.00061 30.1 3.0 86 4-99 2-92 (200)
58 TIGR02803 ExbD_1 TonB system t 40.2 1.2E+02 0.0027 23.7 6.5 14 138-151 101-114 (122)
59 PRK10953 cysJ sulfite reductas 40.0 1.1E+02 0.0024 31.1 7.5 78 134-219 75-158 (600)
60 COG4558 ChuT ABC-type hemin tr 39.8 49 0.0011 30.8 4.6 16 81-96 226-241 (300)
61 cd03556 L-fucose_isomerase L-f 38.5 52 0.0011 33.4 4.8 114 76-214 62-176 (584)
62 PRK13194 pyrrolidone-carboxyla 36.7 2.3E+02 0.0049 24.9 8.1 81 74-157 47-135 (208)
63 PRK13011 formyltetrahydrofolat 36.4 1.3E+02 0.0029 27.6 6.9 80 132-223 15-105 (286)
64 TIGR00504 pyro_pdase pyrogluta 35.0 2.5E+02 0.0054 24.6 8.2 111 72-186 43-166 (212)
65 cd03413 CbiK_C Anaerobic cobal 33.8 78 0.0017 24.4 4.3 29 53-88 2-30 (103)
66 cd03416 CbiX_SirB_N Sirohydroc 33.3 79 0.0017 23.5 4.2 29 54-88 2-30 (101)
67 PRK13197 pyrrolidone-carboxyla 32.2 2.7E+02 0.0059 24.4 7.9 110 74-186 48-169 (215)
68 TIGR00639 PurN phosphoribosylg 31.6 77 0.0017 27.2 4.3 85 5-97 2-89 (190)
69 PF12500 TRSP: TRSP domain C t 31.5 45 0.00098 28.1 2.7 27 193-219 43-70 (155)
70 PRK07308 flavodoxin; Validated 31.3 2.7E+02 0.0058 22.1 9.3 74 134-217 15-93 (146)
71 cd03412 CbiK_N Anaerobic cobal 30.7 90 0.0019 24.9 4.3 34 53-92 2-35 (127)
72 PF04918 DltD_M: DltD central 30.6 20 0.00044 30.0 0.5 24 76-101 15-38 (163)
73 cd03409 Chelatase_Class_II Cla 30.4 86 0.0019 23.0 4.0 27 54-85 2-28 (101)
74 PF01488 Shikimate_DH: Shikima 30.4 15 0.00032 29.5 -0.4 18 201-218 7-24 (135)
75 PRK08621 galactose-6-phosphate 30.0 61 0.0013 26.9 3.2 54 136-216 13-67 (142)
76 PRK00923 sirohydrochlorin coba 28.6 1.2E+02 0.0027 23.6 4.7 30 53-88 3-32 (126)
77 cd03414 CbiX_SirB_C Sirohydroc 28.5 1.2E+02 0.0026 23.2 4.6 29 54-88 3-31 (117)
78 PRK13195 pyrrolidone-carboxyla 27.6 3.4E+02 0.0074 24.1 7.8 94 75-172 49-157 (222)
79 PF13812 PPR_3: Pentatricopept 27.2 80 0.0017 18.0 2.7 21 131-151 13-33 (34)
80 PF01075 Glyco_transf_9: Glyco 26.1 1.2E+02 0.0027 25.9 4.7 40 176-216 103-147 (247)
81 KOG3861 Sensory cilia assembly 26.0 56 0.0012 31.0 2.6 37 207-250 207-243 (438)
82 TIGR03565 alk_sulf_monoox alka 25.6 3.9E+02 0.0085 24.8 8.2 86 132-218 23-110 (346)
83 TIGR01918 various_sel_PB selen 25.6 2.1E+02 0.0046 28.1 6.5 52 134-185 321-372 (431)
84 cd07382 MPP_DR1281 Deinococcus 24.9 44 0.00096 30.2 1.7 67 139-214 48-114 (255)
85 cd03415 CbiX_CbiC Archaeal sir 24.7 1.3E+02 0.0029 24.1 4.3 26 53-84 2-27 (125)
86 TIGR01118 lacA galactose-6-pho 24.2 1.2E+02 0.0026 25.1 4.0 54 135-216 12-67 (141)
87 COG2039 Pcp Pyrrolidone-carbox 24.1 5.1E+02 0.011 22.9 8.7 97 72-173 45-154 (207)
88 TIGR01917 gly_red_sel_B glycin 23.9 98 0.0021 30.4 3.9 52 134-185 321-372 (431)
89 cd01537 PBP1_Repressors_Sugar_ 23.8 4.1E+02 0.0089 21.8 7.7 79 134-216 40-128 (264)
90 KOG2882 p-Nitrophenyl phosphat 23.4 2.7E+02 0.0059 26.1 6.5 76 139-218 115-191 (306)
91 PF04914 DltD_C: DltD C-termin 22.5 38 0.00082 27.6 0.7 56 76-154 38-93 (130)
92 cd07406 MPP_CG11883_N Drosophi 22.4 1.1E+02 0.0024 27.1 3.8 26 72-98 156-181 (257)
93 COG3737 Uncharacterized conser 22.2 73 0.0016 25.9 2.3 23 195-217 58-80 (127)
94 cd00491 4Oxalocrotonate_Tautom 21.8 2E+02 0.0043 18.9 4.2 26 179-204 1-26 (58)
95 COG0028 IlvB Thiamine pyrophos 21.8 4E+02 0.0086 26.8 7.9 83 50-146 62-144 (550)
96 KOG3938 RGS-GAIP interacting p 21.4 2.6E+02 0.0057 26.0 5.9 38 57-95 60-97 (334)
97 PF11432 DUF3197: Protein of u 21.0 1.2E+02 0.0025 24.3 3.1 67 77-151 2-75 (113)
98 PRK11267 biopolymer transport 20.8 4.4E+02 0.0096 21.2 6.7 14 138-151 115-128 (141)
99 PRK13196 pyrrolidone-carboxyla 20.6 5.8E+02 0.012 22.3 8.7 113 72-186 46-172 (211)
100 PF01470 Peptidase_C15: Pyrogl 20.1 2.9E+02 0.0063 23.8 5.8 81 72-156 45-134 (202)
101 PF10035 DUF2179: Uncharacteri 20.1 1.2E+02 0.0026 20.2 2.8 21 76-96 29-49 (55)
No 1
>COG3384 Aromatic ring-opening dioxygenase, catalytic LigB subunit related enzyme [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-57 Score=401.57 Aligned_cols=194 Identities=47% Similarity=0.881 Sum_probs=183.4
Q ss_pred cceEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCC-CeEEecCCCCccCCCCCCCcccccccC
Q 025580 51 VMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDF-PSVNVVQRNDTIHDFYGFPKQMYDLKY 129 (250)
Q Consensus 51 ~~p~~fisHGsP~l~~~~~~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~-~~I~~~~~~~~~~Df~gFp~~~y~~~y 129 (250)
.+|++|+|||||++.+ ++++++++++++|+++++.+||+|||+||||++.. ..|++.++++++|||+|||+++|+++|
T Consensus 8 ~~p~LflshgsP~~~~-~~n~~~~~l~~lG~~~~e~rp~tIiV~SaHw~t~~~~~v~~~e~~~~i~DfygFP~~ly~~~Y 86 (268)
T COG3384 8 MMPALFLSHGSPMLAL-EDNAATRGLRELGRELPELRPDTIIVFSAHWETRGAYHVTASEHPETIHDFYGFPDELYDVKY 86 (268)
T ss_pred hccceeecCCCccccc-CccHHHHHHHHHHHhhhhcCCCEEEEEeceEEecCceeEEcccCcceeeccCCCCHHHHhccC
Confidence 6899999999999999 55789999999999999999999999999999998 889999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCCCHHHHHHHHHHhcccccCCe
Q 025580 130 PAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGV 209 (250)
Q Consensus 130 ~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~~~~~~~~LG~aL~~l~derV 209 (250)
+++|+|+||++|++++.+.|++ .. ..+||+|||+|+||++|||++|+||||||+++.++++.||++||+|++++||.|
T Consensus 87 ~a~G~peLa~~i~~~l~~~~v~-a~-~~~~gLDHGtwvpL~~M~PdadipVV~iSi~~~~~~~~h~~lG~al~~lree~v 164 (268)
T COG3384 87 PAPGSPELAQRIVELLAKLGVP-AD-APSWGLDHGTWVPLRYMFPDADIPVVQISIDCTLSPADHYELGRALRKLREEGV 164 (268)
T ss_pred CCCCCHHHHHHHHHHhcccCcc-cc-CCccCCCccceeeehhhCCccCCcEEEEecCCCCCHHHHHHHHHHHHHHHhCCE
Confidence 9999999999999999999994 33 378999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHH
Q 025580 210 LIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALL 247 (250)
Q Consensus 210 lIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~ 247 (250)
+|||||+++|||+...+.+....||+.+||+|+++.|+
T Consensus 165 lilaSGs~~H~l~~~~~~~~~~~~~a~~F~~~~~~~v~ 202 (268)
T COG3384 165 LILASGSLVHNLRLLKWAGDGPYPWAREFDEWMKKNVV 202 (268)
T ss_pred EEEecCcceeehhhhhhcCCCCChhHHHHHHHHHHHHH
Confidence 99999999999999988655567999999999999996
No 2
>cd07363 45_DOPA_Dioxygenase The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated ca
Probab=100.00 E-value=1.7e-55 Score=394.14 Aligned_cols=194 Identities=58% Similarity=1.047 Sum_probs=181.4
Q ss_pred eEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecCCCCccCCCCCCCcccccccCCCC
Q 025580 53 DTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAP 132 (250)
Q Consensus 53 p~~fisHGsP~l~~~~~~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~~~~~~~~Df~gFp~~~y~~~y~~~ 132 (250)
|++|+|||+|++.+++. ...++|+++++++. +||+||||||||++....|++++.++++|||+|||+++|+++|+++
T Consensus 1 p~~fi~HG~p~~~~~~~-~~~~~l~~~~~~l~--~p~~IiviSaHw~~~~~~i~~~~~~~~~~df~gfp~~~y~~~y~~~ 77 (253)
T cd07363 1 PVLFISHGSPMLALEDN-PATAFLRELGKELP--KPKAILVISAHWETRGPTVTASARPETIYDFYGFPPELYEIQYPAP 77 (253)
T ss_pred CeEEeCCCCcccccCCC-hHHHHHHHHHHhcC--CCCEEEEEcCCcccCCCeEEecCCCCceeCCCCCCHHHeeccCCCC
Confidence 78999999999998554 44589999999985 9999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCCCHHHHHHHHHHhcccccCCeEEE
Q 025580 133 GAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLII 212 (250)
Q Consensus 133 G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~~~~~~~~LG~aL~~l~derVlII 212 (250)
||++||++|.+.++++||+ +....++++|||+||||++|+|+.++||||||+|...++++||+||++|++++++||+||
T Consensus 78 g~~eLa~~i~~~l~~~gi~-~~~~~~~~lDHG~~vPL~~~~p~~~iPvV~isi~~~~~~~~~~~lG~aL~~l~~~~v~ii 156 (253)
T cd07363 78 GSPELAERVAELLKAAGIP-ARLDPERGLDHGAWVPLKLMYPDADIPVVQLSLPASLDPAEHYALGRALAPLRDEGVLII 156 (253)
T ss_pred CCHHHHHHHHHHHHhcCCC-ccccCCcCCcccHHHHHHHHcCCCCCcEEEEEecCCCCHHHHHHHHHHHHhhhhCCEEEE
Confidence 9999999999999999995 777778999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCcccCcccccCC-CCCChhHHHHHHHHHHHHHcCC
Q 025580 213 GSGSATHNLRALQFES-SSISSWALEFDNWLKDALLEGR 250 (250)
Q Consensus 213 gSG~lSHnL~~~~~~~-~~~~~~a~eFD~~v~~~i~~Gd 250 (250)
|||++||||...+++. .++.+|+++||+|+++++++||
T Consensus 157 ~SG~lsH~l~~~~~~~~~~~~~~~~~Fd~~i~~~l~~~d 195 (253)
T cd07363 157 GSGSSVHNLRALRWGGPAPPPPWALEFDDWLKDALTAGD 195 (253)
T ss_pred ecCcceechhhhccccCCCCchHHHHHHHHHHHHHHcCC
Confidence 9999999999888742 3578999999999999999986
No 3
>PRK10628 LigB family dioxygenase; Provisional
Probab=100.00 E-value=3.3e-53 Score=377.45 Aligned_cols=181 Identities=38% Similarity=0.726 Sum_probs=163.6
Q ss_pred CCCCCChhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecCCCCccCCCCCCCcccccccCCCCCCHHHHHHHHH
Q 025580 64 LSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKD 143 (250)
Q Consensus 64 l~~~~~~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~~~~~~~~Df~gFp~~~y~~~y~~~G~~~LA~~i~~ 143 (250)
+.+ ++++++++|+++++.+ .+|++|||||+||++....|+..+.++++|||+|||+++|+++|++||+|+||++|.+
T Consensus 2 ~~l-e~~~~~~~l~~lg~~l--~~PkaIlvvSAHW~t~~~~v~~~~~p~~i~DF~GFP~elY~~~Ypa~G~p~LA~~i~~ 78 (246)
T PRK10628 2 NVL-EDNLYTRAWRTLGETL--PRPKAIVVVSAHWYTRGTGVTAMETPRTIHDFGGFPQALYDTHYPAPGSPALAQRLVE 78 (246)
T ss_pred ccc-cccHHHHHHHHHHHhC--CCCCEEEEEcCCcCCCCCcEEecCCCCcccCCCCCCHHHeeecCCCCCCHHHHHHHHH
Confidence 445 4467889999999986 5899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCCCHHHHHHHHHHhcccccCCeEEEEecCCcccCcc
Q 025580 144 LLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSATHNLRA 223 (250)
Q Consensus 144 ~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~~~~~~~~LG~aL~~l~derVlIIgSG~lSHnL~~ 223 (250)
.|++.|+. ..+.+||+|||+||||++|||++||||||+|++..++++.||+||++|++|||++|+|||||+++|||+.
T Consensus 79 ll~~~~~~--~~~~~rGlDHG~WvpL~~m~P~adIPVvqlSl~~~~~~~~h~~lG~aL~~LR~~gvLIigSG~~~HNL~~ 156 (246)
T PRK10628 79 LLAPVPVT--LDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSTKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLRT 156 (246)
T ss_pred HhhhcCcc--cCCcccCcccchhhhhhhhCCCCCCCeEEeecCCCCCHHHHHHHHHHHHhhccCCEEEEecCccccchhh
Confidence 99998872 2334599999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccC-CCCCChhHHHHHHHHHHHHHcC
Q 025580 224 LQFE-SSSISSWALEFDNWLKDALLEG 249 (250)
Q Consensus 224 ~~~~-~~~~~~~a~eFD~~v~~~i~~G 249 (250)
..+. +.+..+|+.+||+|+.++|+++
T Consensus 157 ~~~~~~~~~~~wa~~F~~wl~~~l~~~ 183 (246)
T PRK10628 157 VKWHGDSSPYPWAESFNQFVKANLTWQ 183 (246)
T ss_pred hcccCCCCCchHHHHHHHHHHHHHhcC
Confidence 6542 2335689999999999999843
No 4
>PF02900 LigB: Catalytic LigB subunit of aromatic ring-opening dioxygenase; InterPro: IPR004183 Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes (IPR000627 from INTERPRO) use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [, ]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Extradiol dioxygenases are usually homo-multimeric, bind one atom of ferrous ion per subunit and have a subunit size of about 33 kDa. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes (IPR000486 from INTERPRO) show sequence similarity, with the two-domain class II enzymes having evolved from a class I enzyme through gene duplication. Class III enzymes are different in sequence and structure, but they do share several common active-site characteristics with the class II enzymes, in particular the coordination sphere and the disposition of the putative catalytic base are very similar. Class III enzymes usually have two subunits, designated A and B. Enzymes that belong to the extradiol class III family include Protocatechuate 4,5-dioxygenase (4,5-PCD; LigAB) (1.13.11.8 from EC) []; and 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase (CarBaBb) []. The crystal structure of dioxygenase LigAB revealed that the molecule is an alpha2beta2 tetramer. The active site contains a non-heme iron coordinated by His12, His61, Glu242, and a water molecule located in a deep cleft of the beta subunit, which is covered by the alpha subunit []. This entry represents the structural domain of subunit B.; GO: 0008198 ferrous iron binding, 0016491 oxidoreductase activity, 0006725 cellular aromatic compound metabolic process; PDB: 2PW6_A 1B4U_D 1BOU_B.
Probab=100.00 E-value=3.3e-50 Score=361.58 Aligned_cols=196 Identities=41% Similarity=0.800 Sum_probs=151.9
Q ss_pred eEEEEcCCCCCCCCCCC------hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-------CCeEEecCCCCccCCCCC
Q 025580 53 DTFFISHGSPTLSIDES------LPARGFLQAWQAKVFSQRPNSILVISAHWDTD-------FPSVNVVQRNDTIHDFYG 119 (250)
Q Consensus 53 p~~fisHGsP~l~~~~~------~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~-------~~~I~~~~~~~~~~Df~g 119 (250)
|++|+|||+|++..++. +.+.++++++++++++.+||+||||||||++. .++|..++.++.+|||+|
T Consensus 1 p~~~~sHgp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pd~ivvis~h~~~~f~~~~~p~~~v~~~~~~~~~~d~~g 80 (272)
T PF02900_consen 1 PAYFISHGPPMLPLEDPEPEGKWQRTFAALQELGRRLREAKPDVIVVISPHWFTNFFEDNMPAFAVGSGEEPEGIYDFYG 80 (272)
T ss_dssp -EEEEE--HHHHHCCH-CCCCCCHHHHHHHHHHHHHCHSTS-SEEEEEEEEECCS--TTCEECBEEE-SSEE-B-BS---
T ss_pred CEEEEeCCCccccccCCchhHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCcchhhcccCCccEEEecCCCccccccccc
Confidence 78999998877665332 24678999999999999999999999999992 235777777899999999
Q ss_pred CCcccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCC----CCCHHHHH
Q 025580 120 FPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQM----HHTGTYHY 195 (250)
Q Consensus 120 Fp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~----~~~~~~~~ 195 (250)
||++.|+++|+++||++||++|.+.+.++||+ ++.+.++++|||+||||++|+|+.++||||||+|. ..++++||
T Consensus 81 fp~~~~~~~~~~~g~~~la~~i~~~l~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~~Pvv~is~~~~~~p~~~~~~~~ 159 (272)
T PF02900_consen 81 FPPELYEIKYPAPGDPELAERIAEHLRKAGFD-VAASPERGLDHGVWVPLYFLFPDADIPVVPISINSFAPPSPSPERHY 159 (272)
T ss_dssp --SSSBSSS--EEB-HHHHHHHHHHHHHTTS--EEECSS--B-HHHHHHHHHHCTT-SSEEEEEEEETSSS-TS-HHHHH
T ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhcCCC-EEeccCcCCccccceeeeecccccCcceeeeEeecccccCCCHHHHH
Confidence 99999999999999999999999999999995 66789999999999999999999999999999998 78999999
Q ss_pred HHHHHhcccc---cCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580 196 NIGKALAPLK---EEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR 250 (250)
Q Consensus 196 ~LG~aL~~l~---derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd 250 (250)
+||++|++++ ++||+|||||++||||...++++... +|+++||+|+++++++||
T Consensus 160 ~lG~aL~~~~~~~~~rv~vi~SG~lsH~l~~~~~~~~~~-~~~~~fD~~i~~~l~~gd 216 (272)
T PF02900_consen 160 RLGRALRKARESSDERVAVIASGGLSHNLRDPRPGGYDP-PWAEEFDEWILDALESGD 216 (272)
T ss_dssp HHHHHHHHHHHTSGGCEEEEEEE-SS--TTSTTTTS----CHHHHHHHHHHCCCCH-H
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCCcccCCCcccccchhh-HhHHHHHHHHHHHHHcCC
Confidence 9999999998 89999999999999999999855321 599999999999998875
No 5
>TIGR02298 HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase. This enzyme catalyzes the ring-opening step in the degradation of 4-hydroxyphenylacetate.
Probab=100.00 E-value=2.3e-47 Score=346.72 Aligned_cols=201 Identities=20% Similarity=0.269 Sum_probs=172.9
Q ss_pred ccccceEEEEcCCCCCCCCCCC--------hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-CCeEEecCCCCccCCCC
Q 025580 48 RLSVMDTFFISHGSPTLSIDES--------LPARGFLQAWQAKVFSQRPNSILVISAHWDTD-FPSVNVVQRNDTIHDFY 118 (250)
Q Consensus 48 ~~~~~p~~fisHGsP~l~~~~~--------~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~-~~~I~~~~~~~~~~Df~ 118 (250)
|.++.-+.++|| .|++++++. .++.++|+++++++++.+||+||||||||++. .+.|+..+.+++.|||+
T Consensus 1 Mg~iv~a~~~~H-~P~i~i~e~~g~~~~~~~~~~~al~~l~~~l~~~~Pd~IVViS~H~~~~~~~~i~~~~~~~g~~~~~ 79 (282)
T TIGR02298 1 MGKLALAAKITH-VPSMYLSELPGPLRGCRQGAIDGHKEISRRAKEMGVDTIVVFDTHWLVNSGYHINCNDQFSGSYTSH 79 (282)
T ss_pred CcceEEEEEecc-CCcEEECCCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEECCCCCcCCCeEEecCCCCcceecCC
Confidence 444556677788 455544332 36778999999999999999999999999997 67888888889999999
Q ss_pred CCCcccccccCCCCCCHHHHHHHHHHHHhCCCCccc--ccCCCCcccchhhhhhhhcCCCCCCEEEeecC-CCCCHHHHH
Q 025580 119 GFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVN--EDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQ-MHHTGTYHY 195 (250)
Q Consensus 119 gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~--~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~-~~~~~~~~~ 195 (250)
|||+++|+++|+++||++||++|.+.+.++|++ +. .+.++++|||+||||+||+|+.++||||||+| ..+++++||
T Consensus 80 g~p~~l~~~~y~~~gd~eLA~~i~~~~~~~gi~-~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~is~~~~~~~~~~~~ 158 (282)
T TIGR02298 80 ELPHFIQDLRYDYPGNPALGQLIADEAQEHGVK-TLAHQVPSLGLEYGTLVPMRYMNEDGHFKVVSIAAWCTVHDIEESR 158 (282)
T ss_pred CCChhhhCceeeCCCCHHHHHHHHHHHHHCCCc-eeeccCCCCCCCeehHhHHHHhCCCCCCcEEEEeecCCCCCHHHHH
Confidence 999999999999999999999999999999995 54 46789999999999999999999999999997 557999999
Q ss_pred HHHHHhccc---ccCCeEEEEecCCcccCccccc-CCCCCChhHHHH----HHHHHHHHHcCC
Q 025580 196 NIGKALAPL---KEEGVLIIGSGSATHNLRALQF-ESSSISSWALEF----DNWLKDALLEGR 250 (250)
Q Consensus 196 ~LG~aL~~l---~derVlIIgSG~lSHnL~~~~~-~~~~~~~~a~eF----D~~v~~~i~~Gd 250 (250)
+||++|+++ +++||+|||||++||||....+ ..+++.+|+.+| |+++++.+++||
T Consensus 159 ~lG~al~~~i~~~~~rV~iIaSG~lSH~L~~~~~~~p~g~~~~a~~f~~~~D~~v~~~l~~gd 221 (282)
T TIGR02298 159 ALGEAIRKAIEQSDGRVAVLASGSLSHRFWDNKDLAPEGMTTIASEFNRQVDLRVLELWRERD 221 (282)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecccceecCcccCCCcccCCchhhHHHHHHHHHHHHHHHcCC
Confidence 999999999 7899999999999999987752 113367897775 888888998887
No 6
>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.
Probab=100.00 E-value=7.4e-46 Score=334.92 Aligned_cols=189 Identities=18% Similarity=0.259 Sum_probs=162.0
Q ss_pred EEEEcCCCCCCCCCCC----hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCC--CCCeEEec-----CCCCccCCCCCCCc
Q 025580 54 TFFISHGSPTLSIDES----LPARGFLQAWQAKVFSQRPNSILVISAHWDT--DFPSVNVV-----QRNDTIHDFYGFPK 122 (250)
Q Consensus 54 ~~fisHGsP~l~~~~~----~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~--~~~~I~~~-----~~~~~~~Df~gFp~ 122 (250)
++|++||+|++.+.+. ..+.++|+++++++++.+||+||||||||++ ..++|+.. ..++++|||+|||.
T Consensus 5 ~~f~~hh~P~~~~~~~~~~~~~~~~a~~~lg~~l~~~~Pd~IvviS~Hw~~~~~~~~v~~~~~~g~~~~~~~~df~g~p~ 84 (271)
T cd07373 5 SAFLVPGSPLPQLRPDVPSWGQFAAATRQAGKALAASRPDVVLVYSTQWFAVLDQQWLTRPRSEGVHVDENWHEFGELPY 84 (271)
T ss_pred EEEecCCCCccccCCCcccHHHHHHHHHHHHHHHHHhCCCEEEEECCCCcccccceeEeeccccccccccChhHhcCccc
Confidence 5799999998777554 1678999999999988899999999999998 45666542 23568999999984
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHhCCCCccc-ccCC-CCcccchhhhhhhh-cCCCCCCEEEeecCCCCCHHHHHHHHH
Q 025580 123 QMYDLKYPAPGAPELAKRVKDLLKASGIKHVN-EDRK-RGLDHGAWVPLMLM-YPEADIPVCQLSVQMHHTGTYHYNIGK 199 (250)
Q Consensus 123 ~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~-~~~~-~~lDHG~~vPL~~l-~p~~diPVV~vS~~~~~~~~~~~~LG~ 199 (250)
+++|+++||++|.+.++++|++ +. .+.+ +++|||+||||+|| +|+.++||||+|++..+++++||+||+
T Consensus 85 -------~~~g~~eLA~~i~~~~~~~gi~-~~~~~~~~~~lDHG~~vPL~~l~~~~~~iPvV~~s~~~~~~~~~~~~lG~ 156 (271)
T cd07373 85 -------DIRSDTALAEACVTACPEHGVH-ARGVDYDGFPIDTGTITACTLMGIGTEALPLVVASNNLYHSGEITEKLGA 156 (271)
T ss_pred -------ccCCCHHHHHHHHHHHHHCCCc-EEEecCCCCCCcchhHHHHHHHcccCCCCCEEEEEeCCCCCHHHHHHHHH
Confidence 6899999999999999999995 65 5554 59999999999999 778999999999998899999999999
Q ss_pred Hhcc-ccc--CCeEEEEecCCcccCccccc--C-CCCCChhHHHHHHHHHHHHHcCC
Q 025580 200 ALAP-LKE--EGVLIIGSGSATHNLRALQF--E-SSSISSWALEFDNWLKDALLEGR 250 (250)
Q Consensus 200 aL~~-l~d--erVlIIgSG~lSHnL~~~~~--~-~~~~~~~a~eFD~~v~~~i~~Gd 250 (250)
+|++ +++ +||+|||||+|||||...++ . .+++.||+++||+|+++.+++||
T Consensus 157 al~~~l~~~~~rV~iIgSG~lSH~L~~~~~~~~~~~~~~p~~~~FD~~~~~~l~~gd 213 (271)
T cd07373 157 IAADAAKDQNKRVAVVGVGGLSGSLFREEIDPREDHIANEEDDKWNRRVLKLIEAGD 213 (271)
T ss_pred HHHHHHHHcCCeEEEEEecccccCcCcCCCcCCCCCccCccHHHHHHHHHHHHHcCC
Confidence 9996 676 99999999999999976542 1 23478999999999999999986
No 7
>cd07370 HPCD The Class III extradiol dioxygenase, homoprotocatechuate 2,3-dioxygenase, catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. HPCD is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.
Probab=100.00 E-value=2.1e-45 Score=333.17 Aligned_cols=197 Identities=21% Similarity=0.272 Sum_probs=173.9
Q ss_pred ceEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-CCeEEecCCCCccCCCCCCCcccccccCC
Q 025580 52 MDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTD-FPSVNVVQRNDTIHDFYGFPKQMYDLKYP 130 (250)
Q Consensus 52 ~p~~fisHGsP~l~~~~~~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~-~~~I~~~~~~~~~~Df~gFp~~~y~~~y~ 130 (250)
.|++|+|||.++... ...++.++|+++++++.+.+||+||||||||++. .+.|+..+.+++.|||+|||.++|+++|+
T Consensus 11 ~P~i~i~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~Pd~ivviS~H~~~~~~~~i~~~~~~~g~~~~~g~p~~~~~i~~~ 89 (280)
T cd07370 11 VPTMMLSEQPGPNKG-CRQAAIDGLKEIGRRARELGVDTIVVFDTHWLVNAGYHINANARFSGLFTSNELPHFIADMPYD 89 (280)
T ss_pred CCeEEecCCCCCccc-hHHHHHHHHHHHHHHhhHcCCCEEEEECCCcccccceeEeccCCCCceecCCCCCchhcCCCCC
Confidence 477888888654432 2246789999999999888999999999999986 57888888888999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCCccc--ccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCCCHHHHHHHHHHhccc---c
Q 025580 131 APGAPELAKRVKDLLKASGIKHVN--EDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPL---K 205 (250)
Q Consensus 131 ~~G~~~LA~~i~~~l~~~Gid~~~--~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~~~~~~~~LG~aL~~l---~ 205 (250)
++||++||++|.+.+.+.|++ +. .+.++++|||+||||++|+|+.++||||+|+|...+++++++||++|+++ +
T Consensus 90 ~~gd~ela~~i~~~~~~~g~~-~~~~~~~~~~lDhg~~vPL~~l~p~~~~pvV~is~~~~~~~~~~~~lG~al~~~~~~~ 168 (280)
T cd07370 90 YAGDPELAHLIAEEATEHGVK-TLAHEDPSLPLEYGTLVPMRFMNEDDHFKVVSVAVWCTHDIEESRRLGEAIRRAIAAS 168 (280)
T ss_pred CCCCHHHHHHHHHHHHHCCCC-eeeecCCCCCCCeeHhhHHHHhCCCCCceEEEEeecCCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999995 44 56789999999999999999999999999999999999999999999998 5
Q ss_pred cCCeEEEEecCCcccCcccccCCC------CCChhHHHHHHHHHHHHHcCC
Q 025580 206 EEGVLIIGSGSATHNLRALQFESS------SISSWALEFDNWLKDALLEGR 250 (250)
Q Consensus 206 derVlIIgSG~lSHnL~~~~~~~~------~~~~~a~eFD~~v~~~i~~Gd 250 (250)
++||+|||||+|||++....+.++ ...||+++||+|++++|++||
T Consensus 169 ~~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~~p~~~~fD~~~~~~i~~gD 219 (280)
T cd07370 169 DRRVALLASGSLSHRFWPNRELEAHEDPFTISSPFNRQVDLRVLELWKEGR 219 (280)
T ss_pred CCCEEEEEeccccccCccCCCccccccccccCChhHHHHHHHHHHHHHcCC
Confidence 679999999999999977666332 146899999999999999987
No 8
>cd07362 HPCD_like Class III extradiol dioxygenases with similarity to homoprotocatechuate 2,3-dioxygenase, which catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. This subfamily of class III extradiol dioxygenases consists of two types of proteins with known enzymatic activities; 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) and 2-amino-5-chlorophenol 1,6-dioxygenase. HPCD catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield the product alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. 2-amino-5-chlorophenol 1,6-dioxygenase catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. The enzyme is probably a heterotetrame
Probab=100.00 E-value=5.5e-45 Score=329.55 Aligned_cols=194 Identities=24% Similarity=0.322 Sum_probs=162.6
Q ss_pred EEEEcCCCCCCCCCCC-----h----hHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCC-eEEecCCCCccCCCCCCCcc
Q 025580 54 TFFISHGSPTLSIDES-----L----PARGFLQAWQAKVFSQRPNSILVISAHWDTDFP-SVNVVQRNDTIHDFYGFPKQ 123 (250)
Q Consensus 54 ~~fisHGsP~l~~~~~-----~----~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~-~I~~~~~~~~~~Df~gFp~~ 123 (250)
++++|| ||+++++. . .+.++|+++++++++.+||+||||||||++... .+.........+|++|||+.
T Consensus 3 a~~~pH--~P~i~~~~~~~~~~~~~~~t~~a~~~l~~~l~~~~Pd~IvvvS~Hw~~~~~~~~~~~~~~~~~~~~~g~p~~ 80 (272)
T cd07362 3 AMLAPH--VPSMCHEENPPENQGCLVGAIKGMKEIRKRIEELKPDVILVISCHWMSSSFHHFVDATPRHGGLTAVECPDL 80 (272)
T ss_pred ccccCC--CCEeecCCCCCchhhhHHHHHHHHHHHHHHhhHcCCCEEEEECCCcccccceeeeccCccccccccCcCCch
Confidence 478899 66555442 1 256889999999988999999999999999863 23333333346899999999
Q ss_pred cccccCCCCCCHHHHHHHHHHHHhCCCCccc--ccCCCCcccchhhhhhhhcCCCCCCEEEeecCC-CCCHHHHHHHHHH
Q 025580 124 MYDLKYPAPGAPELAKRVKDLLKASGIKHVN--EDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQM-HHTGTYHYNIGKA 200 (250)
Q Consensus 124 ~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~--~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~-~~~~~~~~~LG~a 200 (250)
+|+++|+++||++||++|.+.++++||+ ++ .+.++++|||+||||++|+|+.++||||+|+|. .+++++||+||++
T Consensus 81 ~~~~~y~~~g~~~LA~~i~~~l~~~Gi~-~~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~vs~~~~~~~~~~~~~lG~a 159 (272)
T cd07362 81 ISDVPYDYPGDPELGRLLVEEGQEAGLR-VKAVNDPTYIWDYGTVVPLRYLNPNKDIPVVSISACWTAASLEESYTWGEV 159 (272)
T ss_pred hhccccCCCCCHHHHHHHHHHHHHcCCc-eeeccCCCCCCCcchHHHHHHhCCCCCCcEEEEeccCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999995 65 355899999999999999999999999999998 7899999999965
Q ss_pred hcccc---cCCeEEEEecCCcccCcccccC--C-CCC-ChhHHHHHHHHHHHHHcCC
Q 025580 201 LAPLK---EEGVLIIGSGSATHNLRALQFE--S-SSI-SSWALEFDNWLKDALLEGR 250 (250)
Q Consensus 201 L~~l~---derVlIIgSG~lSHnL~~~~~~--~-~~~-~~~a~eFD~~v~~~i~~Gd 250 (250)
|+++. ++||+|||||++||||+...+. + .++ .+|+++||+|+++.+++||
T Consensus 160 i~~al~~~~~rv~ii~SG~lsH~l~~~~~~~~g~~~~~~~~~~~fD~~i~~~l~~gd 216 (272)
T cd07362 160 IGKALLESDKRVVFLASGSLSHNLVRGPEAEEGMNHYPSLAEQQMDRRFIQLLREGQ 216 (272)
T ss_pred HHHHHHhhCCCEEEEEeCcccccCCCCCCCcccccCCCChhHHHHHHHHHHHHHcCC
Confidence 55431 7999999999999999887662 1 233 5899999999999999987
No 9
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=100.00 E-value=1.2e-44 Score=326.49 Aligned_cols=194 Identities=20% Similarity=0.267 Sum_probs=164.7
Q ss_pred EEEcCCCCCCCCCCC----hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEec-CCCCccCCCCCCCcccccccC
Q 025580 55 FFISHGSPTLSIDES----LPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVV-QRNDTIHDFYGFPKQMYDLKY 129 (250)
Q Consensus 55 ~fisHGsP~l~~~~~----~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~-~~~~~~~Df~gFp~~~y~~~y 129 (250)
.|++||+|++.+.++ ..+.++|+++++++.+.+||+||||||||++..+.++++ +..+..++..+|+ +.|+++|
T Consensus 3 ~~l~~H~P~~~~~~~~~~~~~~~~al~~l~~~l~~~~Pd~IvviS~Hw~~~~~~~~i~~~~~~g~~~~~~~~-~~~~~~y 81 (268)
T cd07371 3 AFLVPGPPLPQLGENVPQWEPRSWAYERAGASLAASRPDVVLVYSTQWIAVLDHHWLTRPRSEGRHVDENWP-EFGRLDY 81 (268)
T ss_pred eEecCCCCcccCCCCCCcchHHHHHHHHHHHHHHHcCCCEEEEECCCCccccCcEEecccccceeecCcccc-hhceeee
Confidence 588888998876443 256789999999998889999999999999987544443 2344455567885 6889999
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCcccc--cCCCCcccchhhhhhhhcCCCCCCEEEeecCCC-CCHHHHHHHHHHhcc-cc
Q 025580 130 PAPGAPELAKRVKDLLKASGIKHVNE--DRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMH-HTGTYHYNIGKALAP-LK 205 (250)
Q Consensus 130 ~~~G~~~LA~~i~~~l~~~Gid~~~~--~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~-~~~~~~~~LG~aL~~-l~ 205 (250)
+++||++||++|.+.++++||+ +.. +.++++|||+||||++|+|+.++||||+|+|.. +++++||+||++|++ ++
T Consensus 82 ~~~g~~eLA~~i~~~~~~~gi~-~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~vs~~~~~~~~~~~~~lG~al~~~l~ 160 (268)
T cd07371 82 SINVDVELAEACVEEGRKAGLV-TRMMRYPRFPIDTGTITALTLMRPGTDIPPVVISANNLYLSGEETEGEMDLAGKATR 160 (268)
T ss_pred cCCCCHHHHHHHHHHHHHCCCc-EEEecCCCCCCCchhHHHHHHhcCCCCCCeEEEEecCcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999995 654 678999999999999999999999999999876 799999999999985 46
Q ss_pred c--CCeEEEEecCCcccCcccccCC---CCCChhHHHHHHHHHHHHHcCC
Q 025580 206 E--EGVLIIGSGSATHNLRALQFES---SSISSWALEFDNWLKDALLEGR 250 (250)
Q Consensus 206 d--erVlIIgSG~lSHnL~~~~~~~---~~~~~~a~eFD~~v~~~i~~Gd 250 (250)
+ +||+|||||++||||...+++. .++.+++++||+++++.+++||
T Consensus 161 ~~~~rv~iIgSG~lsH~l~~~~~~~~~~~~~~~~~~~fD~~~~~~~~~gd 210 (268)
T cd07371 161 DAGKRVAVLGSGGLSHSHFHEEIDPPKDHIESEEGDKWNRRMLELMEQGD 210 (268)
T ss_pred HcCCcEEEEEecCccccccCCCCCcccccccchhhHHHHHHHHHHHHcCC
Confidence 6 8999999999999997776531 1356999999999999999986
No 10
>cd07952 ED_3B_like Uncharacterized class III extradiol dioxygenases. This subfamily is composed of proteins of unknown function with similarity to the catalytic B subunit of class III extradiol dioxygenases. Class III extradiol dioxygenases use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. They play key roles in the degradation of aromatic compounds.
Probab=100.00 E-value=5.8e-42 Score=307.06 Aligned_cols=186 Identities=22% Similarity=0.239 Sum_probs=156.6
Q ss_pred EEEEcCCCCCCCCCCC--hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecCCCCccCCCCCCCcccccccCCC
Q 025580 54 TFFISHGSPTLSIDES--LPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPA 131 (250)
Q Consensus 54 ~~fisHGsP~l~~~~~--~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~~~~~~~~Df~gFp~~~y~~~y~~ 131 (250)
++|+|||+|++..... +++.+++++.+.+ ..+||+||||||||......++++..+ .++|++|||.+.|+.+|
T Consensus 2 ~~fi~HG~~~~~~~~~~~~~~~~~l~~~~~~--~~~Pd~IvvispH~~~~~~~~~i~~~~-~~~g~~~~p~~~~~~~~-- 76 (256)
T cd07952 2 IAVIPHGDEIIDPLDEESRKLNEAIKEEGAK--NDDPDVLVVITPHGIRLSGHVAVILTE-YLEGTLRTNKVLIRSKY-- 76 (256)
T ss_pred eEEcCCCCccCCCCCcchHHHHHHHHHHHHH--hcCCCEEEEECCCcccccCceEEeecC-eeeeecccCCCceEEec--
Confidence 4899999988876433 3556777776654 568999999999999876666665443 49999999999988777
Q ss_pred CCCHHHHHHHHHHHHhCCCCcccc---------cCCCCcccchhhhhhhhcCCCCCCEEEeecCCCCCHHHHHHHHHHhc
Q 025580 132 PGAPELAKRVKDLLKASGIKHVNE---------DRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALA 202 (250)
Q Consensus 132 ~G~~~LA~~i~~~l~~~Gid~~~~---------~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~~~~~~~~LG~aL~ 202 (250)
|||++||++|.+.+.++|++ +.. +..+++|||+||||+||+|. ||||+|++..+++++||+||++|+
T Consensus 77 ~~d~ela~~l~~~~~~~g~~-~~~~~~~~~~~~~~~~~lDHG~~VPL~fl~~~---pvV~is~~~~~~~~~~~~lG~aL~ 152 (256)
T cd07952 77 PNDRELANEIYKSARADGIP-VLGINFATSSGDNSDFPLDWGELIPLSFLKKR---PIVLITPPRLLPREELVEFGRALG 152 (256)
T ss_pred CCCHHHHHHHHHHHHHcCCc-eeeccchhhccccCCCCCCccccccHhhCCCC---CeEEEccccCCCHHHHHHHHHHHH
Confidence 69999999999999999984 432 24688999999999999995 999999977679999999999999
Q ss_pred cc---ccCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580 203 PL---KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR 250 (250)
Q Consensus 203 ~l---~derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd 250 (250)
++ +++||+|||||+|||++....+++ +.+|+++||+|+++.|++||
T Consensus 153 ~~~~~~~~~vliIaSGdlSH~l~~~~p~~--~~~~a~~fD~~~~~~l~~~d 201 (256)
T cd07952 153 KALEGYEKRVAVIISADHAHTHDPDGPYG--YSPDAAEYDAAIVEAIENND 201 (256)
T ss_pred HHHHhcCCcEEEEEecCccccCCCCCCCC--CCcchHHHHHHHHHHHHcCC
Confidence 98 567999999999999998665543 57999999999999999987
No 11
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=100.00 E-value=1.8e-41 Score=306.08 Aligned_cols=188 Identities=24% Similarity=0.324 Sum_probs=153.8
Q ss_pred ccccceEEEEcCCCCCCCCCCC----hhHHHHHHHHHHHhhcCCCCEEEEEeCCC-CCCC------CeEEecCCCCccCC
Q 025580 48 RLSVMDTFFISHGSPTLSIDES----LPARGFLQAWQAKVFSQRPNSILVISAHW-DTDF------PSVNVVQRNDTIHD 116 (250)
Q Consensus 48 ~~~~~p~~fisHGsP~l~~~~~----~~~~~~l~~l~~~l~~~~PdaIVviS~Hw-~~~~------~~I~~~~~~~~~~D 116 (250)
|.++.-++++|| +++.-... .++.++++++++++++.+||+|||||||| .+.. ++|.+++....++|
T Consensus 1 M~~iv~~~~~~H--~~~~~~~~~~~~~~~~~al~~~~~~l~~~~Pd~ivvis~dH~~~~~~~~~p~~~i~~~~~~~~~~~ 78 (268)
T cd07367 1 MAKIVGAAATSH--ILMSPKGVEDQAARVVQGMAEIGRRVRESRPDVLVVISSDHLFNINLSLQPPFVVGTADSYTPFGD 78 (268)
T ss_pred CceeEEEEecCC--cCcCCCCchHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchhhhcccccCCceEEeeccccccCCc
Confidence 556777899999 54443111 25678899999999889999999999955 4422 34544443223344
Q ss_pred CCCCCcccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCC----CHH
Q 025580 117 FYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHH----TGT 192 (250)
Q Consensus 117 f~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~----~~~ 192 (250)
| |||.. .++||++||++|.+.+.++||+ +..+.++++|||+||||+||+|+.++||||||+|... +++
T Consensus 79 ~-g~p~~------~~~gd~~LA~~i~~~l~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~isin~~~~p~~~~~ 150 (268)
T cd07367 79 M-DIPRE------LFPGHREFARAFVRQAAEDGFD-LAQAEELRPDHGVMVPLLFMGPKLDIPVVPLIVNINTDPAPSPR 150 (268)
T ss_pred C-CCCcc------cCCCCHHHHHHHHHHHHHcCCC-eeeecCccCCcchhchHHHhCCCCCCCEEEEEecccCCCCCCHH
Confidence 4 88864 4699999999999999999995 7777889999999999999999999999999998876 489
Q ss_pred HHHHHHHHhccc------ccCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580 193 YHYNIGKALAPL------KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR 250 (250)
Q Consensus 193 ~~~~LG~aL~~l------~derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd 250 (250)
+||+||++|+++ +|+||+|||||+|||||.... ..+|+++||+|+++++++||
T Consensus 151 ~~~~lG~al~~~i~~~~~~d~rV~iiaSGgLSH~l~~~~-----~~~~~~efD~~i~~~l~~gd 209 (268)
T cd07367 151 RCWALGKVLAQYVEKRRPAGERVAVIAAGGLSHWLGVPR-----HGEVNEAFDRMFLDLLEGGN 209 (268)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEEcccccCCCCCCc-----ccccCHHHHHHHHHHHHcCC
Confidence 999999999999 789999999999999995432 24689999999999999987
No 12
>cd07320 Extradiol_Dioxygenase_3B_like Subunit B of Class III Extradiol ring-cleavage dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be further divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two-domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B. This model represents the catalytic subunit B of extradiol dioxygenase class
Probab=100.00 E-value=1.7e-39 Score=289.70 Aligned_cols=191 Identities=25% Similarity=0.324 Sum_probs=161.2
Q ss_pred EEEEcCCCCCCCCCCCh--hHHHHHHHHHHHhhcCCCCEEEEEeCCCCC--CCCeEEecCCCCccCCCCCCCcccccccC
Q 025580 54 TFFISHGSPTLSIDESL--PARGFLQAWQAKVFSQRPNSILVISAHWDT--DFPSVNVVQRNDTIHDFYGFPKQMYDLKY 129 (250)
Q Consensus 54 ~~fisHGsP~l~~~~~~--~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~--~~~~I~~~~~~~~~~Df~gFp~~~y~~~y 129 (250)
++|+|||+|+...++.. ...++++++++++.+.+||+|||+||||.. ..+.|+..+..++.||| .+.|+..|
T Consensus 2 ~~~v~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~iviis~hh~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~ 77 (260)
T cd07320 2 AIIIPHGPALYAAEDTGKTRNDYQPIEISKRIKEKRPDTIIVVSPHHLVIISATAITCAETFETADSG----QWGRRPVY 77 (260)
T ss_pred CCcccCCCcchhhcccccccCchHHHHHHHHHHHhCCCEEEEEeCCccccCCCEEEeecceecccccc----ccCCCCCc
Confidence 47999999888774432 112368889888877899999999999995 45677777778889998 44677889
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCcccccCC-CCcccchhhhhhhhcCC-CCCCEEEeecCCCC-CHHHHHHHHHHhcccc-
Q 025580 130 PAPGAPELAKRVKDLLKASGIKHVNEDRK-RGLDHGAWVPLMLMYPE-ADIPVCQLSVQMHH-TGTYHYNIGKALAPLK- 205 (250)
Q Consensus 130 ~~~G~~~LA~~i~~~l~~~Gid~~~~~~~-~~lDHG~~vPL~~l~p~-~diPVV~vS~~~~~-~~~~~~~LG~aL~~l~- 205 (250)
+++||++||++|.+.+.+ |++ +....+ +++|||+||||.||+|+ .++|||||+++... ++++|++||++|++++
T Consensus 78 ~~~~d~ela~~l~~~~~~-~~~-~~~~~~~~~~DHg~~vpl~~l~~~~~~~piVpi~i~~~~~~~~~~~~lG~aL~~~~~ 155 (260)
T cd07320 78 DVKGDPDLAWEIAEELIK-EIP-VTIVNEMDGLDHGTLVPLSYIFGDPWDFKVIPLSVGVLVPPFAKLFEFGKAIRAAVE 155 (260)
T ss_pred CCCCCHHHHHHHHHHHHh-cCC-EEEEcccccCCeeecccHHHHhCCCCCCcEEEEEeeccCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999998 995 554443 69999999999999998 89999999998776 8999999999999998
Q ss_pred --cCCeEEEEecCCcccCcccccC-CCCCChhHHHHHHHHHHHHHcCC
Q 025580 206 --EEGVLIIGSGSATHNLRALQFE-SSSISSWALEFDNWLKDALLEGR 250 (250)
Q Consensus 206 --derVlIIgSG~lSHnL~~~~~~-~~~~~~~a~eFD~~v~~~i~~Gd 250 (250)
|+||+|||||++|||+...++. .....+|++|||+|+++.|++||
T Consensus 156 ~~~~~vliI~SGdlsH~~~~~~~~~~~~~~~~~~efD~~~~~~l~~~d 203 (260)
T cd07320 156 PSDLRVHVVASGDLSHQLQGDRPSSQSGYYPIAEEFDKYVIDNLEELD 203 (260)
T ss_pred hcCCcEEEEEeCccccCCCCCCcccccCcCcchHHHHHHHHHHHHcCC
Confidence 7899999999999999877652 12356899999999999999987
No 13
>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase. This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=100.00 E-value=5.6e-39 Score=291.09 Aligned_cols=190 Identities=19% Similarity=0.329 Sum_probs=154.5
Q ss_pred ccccceEEEEcCCCCCCCCCCC---------hhHHHHHHHHHHHhhcCCCCEEEEEe-CC----CCCCCCeEEecCCCCc
Q 025580 48 RLSVMDTFFISHGSPTLSIDES---------LPARGFLQAWQAKVFSQRPNSILVIS-AH----WDTDFPSVNVVQRNDT 113 (250)
Q Consensus 48 ~~~~~p~~fisHGsP~l~~~~~---------~~~~~~l~~l~~~l~~~~PdaIVviS-~H----w~~~~~~I~~~~~~~~ 113 (250)
|.++.-++++|| .|.+-..+. .+..++++++++++++.+||+||||| +| |....++|.++..++.
T Consensus 1 M~~iv~a~~~sH-vP~ig~~~~~~~~~t~~~~~~~~a~~~~~~~v~~~~PD~iVvis~dH~~~f~~~~~p~f~i~~~~~~ 79 (276)
T cd07949 1 MAKIIGGITTSH-VPAIGGAIAKGLQQTPYWKPFFDGFPPVHDWLEKAKPDVAVVFYNDHGLNFFLDKMPTFAVGAAPSY 79 (276)
T ss_pred ChHHHhhhcCCC-CCcccccccccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEECCcHHhhhccccCCcEEEecCccc
Confidence 444555678999 776653221 12368899999999999999999999 69 5555567777665555
Q ss_pred cCCC--CCCCcccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCC--CCCEEEeecCCCC
Q 025580 114 IHDF--YGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEA--DIPVCQLSVQMHH 189 (250)
Q Consensus 114 ~~Df--~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~--diPVV~vS~~~~~ 189 (250)
.+|+ +|+|. +|+++||++||++|.+.+.++||| +....++++|||+||||+||+|+. ++||||+|+|...
T Consensus 80 ~g~~~~~g~~~-----~~~~~g~~~LA~~i~~~~~~~g~d-~~~~~~~~lDHG~~vPL~~l~~~~d~~~pvV~i~~n~~~ 153 (276)
T cd07949 80 RNADEGWGIPA-----LAPFKGDPELSWHLIESLVEDEFD-ITTCQEMLVDHACTLPMQLFWPGAEWPIKVVPVSINTVQ 153 (276)
T ss_pred cCcccccCCCC-----CCCCCCCHHHHHHHHHHHHHcCCC-eeccCCCCCCcchhhHHHHhcCccCCCCCEEEEEeccCC
Confidence 5553 56665 579999999999999999999995 777789999999999999999986 5999999999775
Q ss_pred ----CHHHHHHHHHHhccc-----ccCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580 190 ----TGTYHYNIGKALAPL-----KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR 250 (250)
Q Consensus 190 ----~~~~~~~LG~aL~~l-----~derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd 250 (250)
++++||+||++|+++ +|+||+|||||+|||||.... +..|+++||+|+++.++ +|
T Consensus 154 ~p~~~~~~~~~lG~al~~~i~~~~~d~rv~iiaSG~lSH~l~~~~-----~g~~~~~fD~~~~~~l~-~d 217 (276)
T cd07949 154 HPLPSPKRCFKLGQAIGRAIESYPEDLRVVVLGTGGLSHQLDGER-----AGFINKDFDRYCLDKMV-DN 217 (276)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEEeCccccCCCCCC-----cccchHHHHHHHHHHHh-cC
Confidence 789999999999998 568999999999999995432 23478999999999998 44
No 14
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=100.00 E-value=1.4e-38 Score=290.82 Aligned_cols=197 Identities=18% Similarity=0.235 Sum_probs=157.6
Q ss_pred cceEEEEcCCCCCCCCCCC---h---------hHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecCCCCccCCCC
Q 025580 51 VMDTFFISHGSPTLSIDES---L---------PARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFY 118 (250)
Q Consensus 51 ~~p~~fisHGsP~l~~~~~---~---------~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~~~~~~~~Df~ 118 (250)
+.-+..++| .|++.+.+. . .+.++++++++++++.+||+|||+||||.+... ......++..+||.
T Consensus 3 iv~a~~~pH-~p~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~Pd~IVViSpHw~~~~~-~~~~~~p~~~G~~~ 80 (294)
T cd07372 3 IISGFLAPH-PPHLVYGENPPQNEPRSQGGWEQLRWAYERARESIEALKPDVLLVHSPHWITSVG-HHFLGVPELSGRSV 80 (294)
T ss_pred eEEEEecCC-CCeeecccCCcccccccchhHHHHHHHHHHHHHHHHHcCCCEEEEECCCcccccC-eeeecCCccccccc
Confidence 445778899 455553221 1 255889999999999999999999999999864 22333455677777
Q ss_pred CC-CcccccccCCCCCCHHHHHHHHHHHHhCCCCccc--ccCCCCcccchhhhhhhhcCCCCCCEEEeecCC-------C
Q 025580 119 GF-PKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVN--EDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQM-------H 188 (250)
Q Consensus 119 gF-p~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~--~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~-------~ 188 (250)
+| -+++|+++|+++||++||++|.+.++++||+ +. .+.++++|||+||||+||+|+.++|||++|++. .
T Consensus 81 ~~~~p~~~~~~~~~~gd~eLA~~i~~~~~~~Gi~-~~~~~~~~~~LDHGt~vPL~fl~p~~~~pvV~is~~~l~~~~~~~ 159 (294)
T cd07372 81 DPIFPNLFRYDFSMNVDVELAEACCEEGRKAGLV-TKMMRNPRFRVDYGTITTLHMIRPQWDIPVVGISANNTPYYLNTK 159 (294)
T ss_pred ccccccceeeccCCCCCHHHHHHHHHHHHHCCCC-eeeccCCCCCCCchHHHHHHHhCCCCCCcEEEEecCccccccccc
Confidence 75 2358899999999999999999999999995 54 367899999999999999999999999999853 2
Q ss_pred CCHHHHHHHHHHhccc-c--cCCeEEEEecCCcccCc---ccccCCC-CCCh---hHHHHHHHHHHHHHcCC
Q 025580 189 HTGTYHYNIGKALAPL-K--EEGVLIIGSGSATHNLR---ALQFESS-SISS---WALEFDNWLKDALLEGR 250 (250)
Q Consensus 189 ~~~~~~~~LG~aL~~l-~--derVlIIgSG~lSHnL~---~~~~~~~-~~~~---~a~eFD~~v~~~i~~Gd 250 (250)
.++++||+||++|+++ + ++||+|||||+|||++. ...+++. ++++ .+++||+.+++.+++||
T Consensus 160 ~~~~~~~~lG~ai~~al~~~~~RV~vIaSG~LSH~l~~~~~~~p~~~~~~~~~~~~~~~fD~~vl~~l~~gd 231 (294)
T cd07372 160 EGLGEMDVLGKATREAIRKTGRRAVLLASNTLSHWHFHEEPAPPEDMSKEHPETYAGYQWDMRMIELMRQGR 231 (294)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcccccCccCCCCCccccccccccchhHHHHHHHHHHHHHcCC
Confidence 4589999999999994 4 48899999999999984 3334321 2232 89999999999999997
No 15
>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate. Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.
Probab=100.00 E-value=1.3e-38 Score=288.77 Aligned_cols=191 Identities=22% Similarity=0.323 Sum_probs=156.2
Q ss_pred ccccceEEEEcCCCCCCCC---CC--C----hhHHHHHHHHHHHhhcCCCCEEEEE-eCCCCCC----CCeEEecCCCCc
Q 025580 48 RLSVMDTFFISHGSPTLSI---DE--S----LPARGFLQAWQAKVFSQRPNSILVI-SAHWDTD----FPSVNVVQRNDT 113 (250)
Q Consensus 48 ~~~~~p~~fisHGsP~l~~---~~--~----~~~~~~l~~l~~~l~~~~PdaIVvi-S~Hw~~~----~~~I~~~~~~~~ 113 (250)
|.++.-++.+|| .|.+.. .+ . .++.++++++++++++.+||+|||| |+|...+ .+.+.++..++.
T Consensus 1 Ma~iv~a~~~sH-~P~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~pD~vVvi~~dH~~~f~~~~~P~f~i~~~~~~ 79 (277)
T cd07364 1 MARIIAGVGTSH-VPAIGAAMDNGKTDEPYWKPLFKGYQPARDWIKKNKPDVAIIVYNDHASAFDLDIIPTFAIGTAEEF 79 (277)
T ss_pred CHHHHhhhcCCC-CccccccccCCCCchHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCchHHhhcccCCCceEEeecccc
Confidence 444555678899 777665 22 1 2567889999999999999999999 7785544 346666666677
Q ss_pred cCCCCCCCcccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCC---CCEEEeecCCC--
Q 025580 114 IHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEAD---IPVCQLSVQMH-- 188 (250)
Q Consensus 114 ~~Df~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~d---iPVV~vS~~~~-- 188 (250)
.+++++|...-.. +++||++||++|.+.+.++||+ +....++++|||+||||+||+|+.+ +||||+|+|..
T Consensus 80 ~~~~~~~g~~~~~---~~~g~~~LA~~i~~~~~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~~~p~pVV~vsvn~~~~ 155 (277)
T cd07364 80 QPADEGYGPRPVP---DVQGHPDLAWHIAQSLILDDFD-MTIVNEMDVDHGLTVPLSIMYGQPEAWPCKVIPLCVNVVQY 155 (277)
T ss_pred ccCccccCCCCCC---CCCCCHHHHHHHHHHHHHcCCC-EEecCCCCCCcchhhhHHHhCCccccCCCCeEEEEeccCCC
Confidence 7777788543221 6899999999999999999995 7777889999999999999999764 78999999877
Q ss_pred --CCHHHHHHHHHHhccc-----ccCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHc
Q 025580 189 --HTGTYHYNIGKALAPL-----KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLE 248 (250)
Q Consensus 189 --~~~~~~~~LG~aL~~l-----~derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~ 248 (250)
.++++||+||++|+++ +|+||+|||||+|||||..... ..++++||+|+++++++
T Consensus 156 p~~~~~~~~~lG~al~~~i~~~~rd~rV~iIaSG~lSH~L~~~~~-----g~~~~eFD~~i~~~l~~ 217 (277)
T cd07364 156 PQPTGKRCFALGKAIRRAVESYDEDLKVAIWGTGGMSHQLQGERA-----GLINKEFDNRFLDKLIS 217 (277)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEecCccccCCCCCCc-----cCchHHHHHHHHHHHHh
Confidence 5899999999999999 7899999999999999976531 24599999999999985
No 16
>cd07359 PCA_45_Doxase_B_like Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes. This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model repres
Probab=100.00 E-value=3.3e-38 Score=284.15 Aligned_cols=187 Identities=22% Similarity=0.307 Sum_probs=152.9
Q ss_pred cceEEEEcCCCCCCCCCCC--------hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-----C--CeEEecCCCCccC
Q 025580 51 VMDTFFISHGSPTLSIDES--------LPARGFLQAWQAKVFSQRPNSILVISAHWDTD-----F--PSVNVVQRNDTIH 115 (250)
Q Consensus 51 ~~p~~fisHGsP~l~~~~~--------~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~-----~--~~I~~~~~~~~~~ 115 (250)
+.-++++|| ||+++++. .++.++|+++++++++.+||+||||||||.+. . ++|+.++....
T Consensus 2 iv~~~~~~H--~P~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Pd~ivvis~~h~~~~~~~~~~~~~i~~~~~~~~-- 77 (271)
T cd07359 2 IVLGIGASH--APGLTGAADPGPDAVRAAVFAAFARIRDRLEAARPDVVVVVGNDHFTNFFLDNMPAFAIGIADSYEG-- 77 (271)
T ss_pred eEEEEecCC--CCcccCCCCCCcHhHHHHHHHHHHHHHHHHHHhCCCEEEEEeCcHHhhcCcccCCceEEeecccccC--
Confidence 345688999 66554332 25678899999999889999999999965544 2 35555444432
Q ss_pred CCCCCCcccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCC----CH
Q 025580 116 DFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHH----TG 191 (250)
Q Consensus 116 Df~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~----~~ 191 (250)
++.+| +|..+|+++||++||++|.+.+.+.|+ ++..+.++++|||+||||+||+|+.++||||||+|... ++
T Consensus 78 ~~~~~---~~~~~~~~~~d~elA~~i~~~~~~~g~-~~a~~~~~~lDHg~~vpL~~l~~~~~~pvVpvsv~~~~~~~~~~ 153 (271)
T cd07359 78 PDEGW---LGIPRAPVPGDADLARHLLAGLVEDGF-DVAFSYELRLDHGITVPLHFLDPDNDVPVVPVLVNCVTPPLPSL 153 (271)
T ss_pred Ccccc---ccCcCCCCCCCHHHHHHHHHHHHHcCC-CeeccCCCCCCcchhhHHHHhcCCCCCCEEEEEecccCCCCCCH
Confidence 22222 466789999999999999999999999 47777789999999999999999999999999998754 78
Q ss_pred HHHHHHHHHhccc-----ccCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580 192 TYHYNIGKALAPL-----KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR 250 (250)
Q Consensus 192 ~~~~~LG~aL~~l-----~derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd 250 (250)
++||+||++|+++ +|+||+|||||+||||+.... +.+|+++||+|+.+++++||
T Consensus 154 ~~~~~lG~aL~~~i~~~~~d~rV~iIaSGdlSH~l~~~~-----~g~~~~~fD~~~~~~l~~~d 212 (271)
T cd07359 154 RRCYALGRALRRAIESFPGDLRVAVLGTGGLSHWPGGPR-----HGEINEEFDREFLDLLERGD 212 (271)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEecCcccCCCCCcc-----ccccCHHHHHHHHHHHHhCC
Confidence 9999999999997 578999999999999997642 23689999999999999987
No 17
>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=100.00 E-value=4.2e-38 Score=285.39 Aligned_cols=191 Identities=16% Similarity=0.190 Sum_probs=152.2
Q ss_pred ccccceEEEEcCCCCCCCC--CCC------hhHHHHHHHHHHHhhcCCCCEEEEEe-CCCCCCC----CeEEecCCCCcc
Q 025580 48 RLSVMDTFFISHGSPTLSI--DES------LPARGFLQAWQAKVFSQRPNSILVIS-AHWDTDF----PSVNVVQRNDTI 114 (250)
Q Consensus 48 ~~~~~p~~fisHGsP~l~~--~~~------~~~~~~l~~l~~~l~~~~PdaIVviS-~Hw~~~~----~~I~~~~~~~~~ 114 (250)
|.++.-++++|| ||+++ ++. .++.++++++++++++.+||+||||| +||..+. +.+.++... ..
T Consensus 1 M~~iv~a~~~sH--~P~i~~~~~~~~~~~~~~~~~a~~~~~~~v~~~~pD~ivvi~~dH~~~f~~~~~P~f~i~~~~-~~ 77 (277)
T cd07368 1 MGKIVGGFMMPH--DPVMFVTPTAPPAAQREICWHAYAICAERLAALQVTSVVVIGDDHYTLFGTYCLPMYLIGTGD-VD 77 (277)
T ss_pred CcceeEEeecCC--CccccCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHhhhhhccCCceEEeccc-cc
Confidence 556777899999 55554 331 26678899999999999999999998 5666542 334444333 36
Q ss_pred CCCCCCCcccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCC-----CCCCEEEeecCC--
Q 025580 115 HDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPE-----ADIPVCQLSVQM-- 187 (250)
Q Consensus 115 ~Df~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~-----~diPVV~vS~~~-- 187 (250)
+||..|+... +..++|+++||++|.+.+.++||| +..+.++++|||+|+||++|+|. .++|+|||++|.
T Consensus 78 g~~~~~~~~~---~~~~~g~~eLA~~i~~~l~~~g~~-~~~~~~~~lDHG~~vPL~~l~~~~~~~~~~~p~VPV~~n~~~ 153 (277)
T cd07368 78 GPYDPLPGLP---RAVIENNEPLAHHIMQHGLEYGID-WAVARSFTVDHAATIPIHLAVRPVRAKGKGMRAIPVYLATGV 153 (277)
T ss_pred CCccccCCCC---cccCcCCHHHHHHHHHHHHHcCCC-EeeecCcCCCcchhccHHHHhCcccccCCCCCeEEEEEeccc
Confidence 6665554321 235799999999999999999995 77778999999999999999985 378888887754
Q ss_pred --CCCHHHHHHHHHHhcc-----cccCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580 188 --HHTGTYHYNIGKALAP-----LKEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR 250 (250)
Q Consensus 188 --~~~~~~~~~LG~aL~~-----l~derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd 250 (250)
..++++||+||++|++ ++|+||+|||||+|||||+... ..+|+++||+|+++.+++||
T Consensus 154 ~p~~~~~~~~~lG~al~~ai~~~~~d~rVliIaSG~LSH~l~~~~-----~~~~~~~fD~~~~~~l~~gd 218 (277)
T cd07368 154 DPFITSWRAHELGRVIGAAVEAWQGDERVAIIGSGGISHWVGTAE-----MGAVNEGFDREIMKLVAQGD 218 (277)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCcccCCCCCcc-----ccccCHHHHHHHHHHHHcCC
Confidence 4678999999999999 5689999999999999996543 24789999999999999986
No 18
>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=100.00 E-value=1.1e-37 Score=283.48 Aligned_cols=190 Identities=21% Similarity=0.305 Sum_probs=154.3
Q ss_pred ccccceEEEEcCCCCCCCCCC-C---------hhHHHHHHHHHHHhhcCCCCEEEEE-eCCCCCCC----CeEEecCCCC
Q 025580 48 RLSVMDTFFISHGSPTLSIDE-S---------LPARGFLQAWQAKVFSQRPNSILVI-SAHWDTDF----PSVNVVQRND 112 (250)
Q Consensus 48 ~~~~~p~~fisHGsP~l~~~~-~---------~~~~~~l~~l~~~l~~~~PdaIVvi-S~Hw~~~~----~~I~~~~~~~ 112 (250)
|.++.-++.+|| ||++..+ + .++.++++++++++++.+||+|||| |+|+..+. +.+.++...+
T Consensus 1 M~~Iv~a~~~sH--~P~i~~~~~~g~~~~~~~~~~~~a~~~i~~~i~~~~PDvvVii~~dH~~~f~~d~~P~f~Ig~~~~ 78 (284)
T PRK13366 1 MARITASVYTSH--VPAIGAAIDLGKTGEPYWQPVFKGYEFSKQWEKEEKPDVIFLVYNDHATAFSLDIIPTFAIGTAAE 78 (284)
T ss_pred CcceeEEeecCC--CCccccccccCCCchHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCcHHhhcccCCCceEEeeCce
Confidence 566778899999 6655542 1 2667889999999999999999999 88976653 3565555555
Q ss_pred ccCCCCCCCcccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCC---CCEEEeecCCCC
Q 025580 113 TIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEAD---IPVCQLSVQMHH 189 (250)
Q Consensus 113 ~~~Df~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~d---iPVV~vS~~~~~ 189 (250)
...|+.+|... ++. +.+||++||++|.+.+.++||| +....++++|||+||||+||+|+.+ +||||+|+|...
T Consensus 79 ~~~~~~~~g~~--~v~-~~~g~~eLA~~i~~~l~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~~~~ipvVpisvn~~~ 154 (284)
T PRK13366 79 YQPADEGWGPR--PVP-KVIGHPDLAAHIAQSVIQDDFD-LTIVNKMDVDHGLTVPLSLMCGQPDAWPCPVIPFAVNVVQ 154 (284)
T ss_pred ecCcccccCCC--CCC-CCCCCHHHHHHHHHHHHHCCCC-EeecCCCCCCccHHHHHHHhCccccCCCCceEEEeeccCC
Confidence 55566656322 234 7899999999999999999995 7777889999999999999999755 999999999887
Q ss_pred ----CHHHHHHHHHHhccc-----ccCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHc
Q 025580 190 ----TGTYHYNIGKALAPL-----KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLE 248 (250)
Q Consensus 190 ----~~~~~~~LG~aL~~l-----~derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~ 248 (250)
++++||+||++|+++ +|+||+|||||+|||||...+. | + .+++||+|+++.+++
T Consensus 155 ~p~~~~~r~~~lG~al~~~i~~~~~d~rV~iIaSGgLSH~l~~p~~-g--~--~~~~fD~~~l~~l~~ 217 (284)
T PRK13366 155 YPVPSGRRCFALGQAIRRAVESYDEDLNVQIWGTGGMSHQLQGPRA-G--L--INREWDNAFLDRLIA 217 (284)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEecCccccCCCCCCC-C--C--CcHHHHHHHHHHHhc
Confidence 899999999999999 4689999999999999985332 2 2 279999999999965
No 19
>PRK13358 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=100.00 E-value=1.5e-37 Score=280.16 Aligned_cols=188 Identities=22% Similarity=0.331 Sum_probs=157.6
Q ss_pred ccccceEEEEcCCCCCCCC-CCC---hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-------CCeEEecCCCCccCC
Q 025580 48 RLSVMDTFFISHGSPTLSI-DES---LPARGFLQAWQAKVFSQRPNSILVISAHWDTD-------FPSVNVVQRNDTIHD 116 (250)
Q Consensus 48 ~~~~~p~~fisHGsP~l~~-~~~---~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~-------~~~I~~~~~~~~~~D 116 (250)
|.++.-++++|| +.+.- .++ .++.++|+++++++.+.+||+|||+||||.+. .++|..++...+.||
T Consensus 1 m~~i~~~~~~pH--~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Pd~iViis~~h~~~~~~~~~~~~~i~~~~~~~p~gd 78 (269)
T PRK13358 1 MGKIVGAFATSH--VLMSSKGGEEQAKRVVEGMREIGRRLRELRPDVLVVIGSDHLFNFNTGCQPPFLVGTGDSDTPYGD 78 (269)
T ss_pred Chhhheehcccc--cccCCCCchHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchhhhcccccCCCeEEEecCCCCCccc
Confidence 455667889999 43321 111 36778999999999888999999999999854 345666667778899
Q ss_pred CCCCCcccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCCC----HH
Q 025580 117 FYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHT----GT 192 (250)
Q Consensus 117 f~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~~----~~ 192 (250)
| |||++ .++||++||++|.+.+.+.|++ +..+.++++|||+|+||++|+|+.++||||||+++..+ .+
T Consensus 79 ~-g~~~~------~~~g~~~LA~~l~~~~~~~~~~-~a~~~~~~~DHg~~vPl~~l~~~~~~pvVpisv~~~~~p~~~~~ 150 (269)
T PRK13358 79 M-DIPRE------LVPGHRAFAQAIALHRAADGFD-LAQAEELRPDHGVMIPLLFMDPGRRIPVVPVYVNINTDPFPSAK 150 (269)
T ss_pred c-CCCcc------cCCCCHHHHHHHHHHHHHcCCC-eeeccccCCCcchhhhHHHhcCCCCCCEEEEEecccCCCCCCHH
Confidence 8 99986 3699999999999999999995 66777899999999999999999999999999987554 59
Q ss_pred HHHHHHHHhcccc------cCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580 193 YHYNIGKALAPLK------EEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR 250 (250)
Q Consensus 193 ~~~~LG~aL~~l~------derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd 250 (250)
+||+||++|+++. |+||+|||||+|||++.... +.+|+++||+|+.+++++||
T Consensus 151 ~~~~lG~al~~~~~~~~~~~~rvlvIaSGdlSH~l~~~~-----~~~~~~~fD~~~~~~i~~~D 209 (269)
T PRK13358 151 RCAALGEVIRQAVEKDRPADERVAVIGTGGLSHWLGVPE-----HGEVNEDFDRMVMDALVSGD 209 (269)
T ss_pred HHHHHHHHHHHHHHhhCCCCCcEEEEecCCccCCCCCcc-----ccccHHHHHHHHHHHHHcCC
Confidence 9999999999973 57999999999999997432 35789999999999999987
No 20
>PRK03881 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-37 Score=299.21 Aligned_cols=192 Identities=22% Similarity=0.346 Sum_probs=168.8
Q ss_pred cceEEEEcCCCCCCCCCCC--------hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecCCCCccCCCCCCCc
Q 025580 51 VMDTFFISHGSPTLSIDES--------LPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPK 122 (250)
Q Consensus 51 ~~p~~fisHGsP~l~~~~~--------~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~~~~~~~~Df~gFp~ 122 (250)
+.-+++++| ||+++++. .++.++|+++++++.+.+||+|||+||||+.....+.+...+...+||+||+.
T Consensus 3 i~~a~~~PH--~P~l~p~~~~~~~~~~~~~~~a~~~~~~~l~~~~Pd~IVVispH~~~~~~~~~i~~~~~~~gdf~~fg~ 80 (467)
T PRK03881 3 IVGAYLMPH--PPIIVPEVGRGEEKKIQATIDALRELARRIAEKKPDTIIIISPHGPVFRDAVAISDGPRLKGDLGRFGA 80 (467)
T ss_pred eEEEEEcCC--CCEeecCCCCCchhhHHHHHHHHHHHHHHHHHhCCCEEEEECCCcccccCcEEEecCcceeeehhccCC
Confidence 567889999 56776531 36778999999999888999999999999987778888778889999999974
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHhCCCCcccc---------cCCCCcccchhhhhhhhcCC-CCCCEEEeecCCCCCHH
Q 025580 123 QMYDLKYPAPGAPELAKRVKDLLKASGIKHVNE---------DRKRGLDHGAWVPLMLMYPE-ADIPVCQLSVQMHHTGT 192 (250)
Q Consensus 123 ~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~---------~~~~~lDHG~~vPL~~l~p~-~diPVV~vS~~~~~~~~ 192 (250)
|+++|+++||++||++|.+.++++||+ +.. +.++++|||+||||.||+|. .++|||||++ ...+++
T Consensus 81 --~~v~~~~~~d~eLA~~i~~~~~~~g~~-~~~~~~~~~~~~~~~~~lDHg~~VpL~fl~~~~~d~pVVpis~-~~~~~~ 156 (467)
T PRK03881 81 --PEVSFSFKNDLELVEEIAEEAKKEGIP-VVEVDEELARKYEVSGELDHGTMVPLYFLRKAGSDFKLVHISY-GGLSPE 156 (467)
T ss_pred --CCccccCCCCHHHHHHHHHHHHHcCCc-eEeecccccccccCCCCCCceEEeehhhhccccCCCCEEEEeC-CCCCHH
Confidence 789999999999999999999999995 554 57789999999999999998 7999999999 577999
Q ss_pred HHHHHHHHhccccc---CCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580 193 YHYNIGKALAPLKE---EGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR 250 (250)
Q Consensus 193 ~~~~LG~aL~~l~d---erVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd 250 (250)
+|++||++|+++++ +||+|||||++||++....+++ +.+++++||+|+.++|++||
T Consensus 157 ~~~~lG~aL~~~~~~~~~rvliIaSGdLSH~l~~~~p~g--~~~~a~~fD~~ii~~i~~gD 215 (467)
T PRK03881 157 ELYKFGMAIREAAEELGRKVVLIASGDLSHRLTPDGPYG--YAPEGPEFDRAIVELLSKGD 215 (467)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEeCcccccCCCCCCCC--CCcchHHHHHHHHHHHHcCC
Confidence 99999999999864 5999999999999997765533 57899999999999999987
No 21
>cd07951 ED_3B_N_AMMECR1 The N-terminal domain, an extradiol dioxygenase class III subunit B-like domain, of unknown proteins containing a C-terminal AMMECR1 domain. This subfamily is composed of uncharacterized proteins containing an N-terminal domain with similarity to the catalytic B subunit of class III extradiol dioxygenases and a C-terminal AMMECR1-like domain. This model represents the N-terminal domain. Class III extradiol dioxygenases use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon, however, proteins in this subfamily do not contain a potential metal binding site and may not exhibit class III extradiol dioxygenase-like activity. The AMMECR1 protein was proposed to be a regulatory factor that is potentially involved in the development of AMME contiguous gene deletion syndrome.
Probab=100.00 E-value=3.1e-37 Score=275.36 Aligned_cols=187 Identities=24% Similarity=0.333 Sum_probs=162.2
Q ss_pred EEcCCCCCCCCCCC--------hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecCCCCccCCCCCCCcccccc
Q 025580 56 FISHGSPTLSIDES--------LPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDL 127 (250)
Q Consensus 56 fisHGsP~l~~~~~--------~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~~~~~~~~Df~gFp~~~y~~ 127 (250)
|+|| ||+++++. .+++++++++++.+.+.+||+|||+||||.+....++++..++..+||+||+ .|++
T Consensus 1 ~~ph--~p~l~p~~~~~~~~~~~~~~~a~~~~~~~l~~~~pd~ivvvg~h~~~~~~~~~~~~~~~~~~~~~gf~--~~~~ 76 (256)
T cd07951 1 LVPH--PPLLVPEVGGGEEAEIAATRAACEAAARRLAAARPDTIVVVSPHAPVFRDAFAISTGGTLRGDFSRFG--APEV 76 (256)
T ss_pred CCCC--CCcccccCCCccHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCcccccceeEeccCCceecchhhcC--CCcc
Confidence 4789 55554221 2567889999999888899999999999999888898888889999999996 4889
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCcccccCC--CCcccchhhhhhhhcCC-CCCCEEEeecCCCCCHHHHHHHHHHhccc
Q 025580 128 KYPAPGAPELAKRVKDLLKASGIKHVNEDRK--RGLDHGAWVPLMLMYPE-ADIPVCQLSVQMHHTGTYHYNIGKALAPL 204 (250)
Q Consensus 128 ~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~--~~lDHG~~vPL~~l~p~-~diPVV~vS~~~~~~~~~~~~LG~aL~~l 204 (250)
+|++++|++||++|.+.++++|++ +..... +++|||+||||.||+|. .++|||||+++ ..++++|++||++|+++
T Consensus 77 ~~~~~~d~~la~~l~~~l~~~g~~-~~~~~~~~~~~DHg~~vpl~~l~~~~~~~pvVpi~~~-~~~~~~~~~lG~aL~~~ 154 (256)
T cd07951 77 SFGVDLDLELVEEIAGEADKEGLP-VGALGERIPELDHGTLVPLYFLRKAGSDGKLVRIGLS-GLSPEELYAFGRALAAA 154 (256)
T ss_pred eEeeeCCHHHHHHHHHHhhhcCCC-cccccCCCCCCCchhhhhHHhhcccCCcCCeEEEecC-CCCHHHHHHHHHHHHHH
Confidence 999999999999999999999994 554433 69999999999999998 89999999994 67999999999999998
Q ss_pred ---ccCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580 205 ---KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR 250 (250)
Q Consensus 205 ---~derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd 250 (250)
++++|+|||||++|||+...+++ ...+++.+||+|+.++|++||
T Consensus 155 ~~~~~~~vlii~SgdlsH~l~~~~p~--~~~~~a~~~D~~~~~~l~~~D 201 (256)
T cd07951 155 AEELGRRVALIASGDLSHRLTEDAPG--GYDPRGPEFDAAIAEALAKGD 201 (256)
T ss_pred HHhcCCcEEEEEecccccccCCCCCC--CCCcchHHHHHHHHHHHHcCC
Confidence 46899999999999999776553 246889999999999999986
No 22
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=100.00 E-value=7.1e-37 Score=277.50 Aligned_cols=191 Identities=20% Similarity=0.292 Sum_probs=155.9
Q ss_pred ccccceEEEEcCCCCCCCCC------CC---hhHHHHHHHHHHHhhcCCCCEEEEEe-CCCCCC----CCeEEecCCCCc
Q 025580 48 RLSVMDTFFISHGSPTLSID------ES---LPARGFLQAWQAKVFSQRPNSILVIS-AHWDTD----FPSVNVVQRNDT 113 (250)
Q Consensus 48 ~~~~~p~~fisHGsP~l~~~------~~---~~~~~~l~~l~~~l~~~~PdaIVviS-~Hw~~~----~~~I~~~~~~~~ 113 (250)
|+++..++++|| .|.+--. .+ .+..++++++++++++.+||+||||| +|...+ .+.|.++...+.
T Consensus 1 M~~iv~~~~~sH-~P~vg~~~~~~~~~~~~~~~v~~a~~~~~~~v~~~~PDvvVvis~dH~~~ff~d~~p~f~i~~~~~~ 79 (278)
T PRK13364 1 MAKIIGGITTSH-VPAIGGAIAKGLQQDPYWKPFFDGFPPVREWLEKVKPDVAVVFYNDHGLNFFLDKMPTFAVGAAPEY 79 (278)
T ss_pred ChhhhceeecCC-CCccccccccccccChhHHHHHHHHHHHHHHHHHhCCCEEEEECCchHhhhccccCCeEEEeeCcee
Confidence 455556788999 7755411 11 23368899999999999999999999 786552 357777777777
Q ss_pred cCCCCCCC-cccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCC--CCEEEeecCCCC-
Q 025580 114 IHDFYGFP-KQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEAD--IPVCQLSVQMHH- 189 (250)
Q Consensus 114 ~~Df~gFp-~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~d--iPVV~vS~~~~~- 189 (250)
.+|+.+|. +. . .+++||++||++|.+.+.++||| +....++++|||+||||+||+|+.+ +||||||+|+..
T Consensus 80 ~g~~~~~g~~~---~-~~~~~~~~lA~~i~~~l~~~gid-~~~~~~~~lDHG~~vPL~~l~~~~d~~~pvVpv~ln~~~~ 154 (278)
T PRK13364 80 SNADEGWGIPT---L-APFKGDTELSWHIIESLVEEEFD-ITTCQEMLVDHAFTLPLELFWPGRDYPVKVVPVCINTVQH 154 (278)
T ss_pred cCChhhcCCCC---C-CCCCCCHHHHHHHHHHHHHcCCC-eecccCCCCCcchhhhHHHhCcccCCCCCEEEEEeeccCC
Confidence 88876663 21 1 48899999999999999999995 7778889999999999999999876 889999998766
Q ss_pred ---CHHHHHHHHHHhccc-----ccCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580 190 ---TGTYHYNIGKALAPL-----KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR 250 (250)
Q Consensus 190 ---~~~~~~~LG~aL~~l-----~derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd 250 (250)
++++||+||++|+++ +|+||+|||||+|||||. ..++| +. +++||+++++.+++ |
T Consensus 155 p~~~~~r~~~lG~al~~~i~~~~~d~rV~iIaSG~LSH~l~-~~p~G--~~--~~~fD~~~l~~l~~-d 217 (278)
T PRK13364 155 PLPSARRCYKLGQAIGRAIASWPSDERVVVIGTGGLSHQLD-GERAG--FI--NKDFDLQCMDSLVS-D 217 (278)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCccccCCC-CCCcc--cC--CHHHHHHHHHHHHh-C
Confidence 799999999999999 579999999999999998 55544 33 49999999999986 5
No 23
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en
Probab=100.00 E-value=6.2e-37 Score=277.86 Aligned_cols=188 Identities=20% Similarity=0.304 Sum_probs=144.9
Q ss_pred ccccceEEEEcCCCCCCCC-CCC---------hhHHHHHHHHHHHhhcCCCCEEEEEeCCCC-CC----CCeEEecCCCC
Q 025580 48 RLSVMDTFFISHGSPTLSI-DES---------LPARGFLQAWQAKVFSQRPNSILVISAHWD-TD----FPSVNVVQRND 112 (250)
Q Consensus 48 ~~~~~p~~fisHGsP~l~~-~~~---------~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~-~~----~~~I~~~~~~~ 112 (250)
|.++.-++++|| ||++. .+. .++.++++++++++++.+||+|||+|+||. .+ .+.++++....
T Consensus 1 M~~iv~a~~~sH--~P~ig~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~PD~iVvi~~dH~~~f~~d~~p~f~Ig~~~~ 78 (277)
T cd07950 1 MAKIIGGIGSSH--TPTIGFAYDKNKQNDPAWAPIFDGYEPVKQWLAEQKPDVLFMVYNDHVTSFFFDHYSAFALGVGDS 78 (277)
T ss_pred ChHHhhhhhcCC--CCccCcccccCCCchHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHhccccCCcEEEEeccc
Confidence 344555678999 55543 221 267789999999999999999999995543 33 23454444333
Q ss_pred c-cCCCCCCCcccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCC---CCEEEeecCCC
Q 025580 113 T-IHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEAD---IPVCQLSVQMH 188 (250)
Q Consensus 113 ~-~~Df~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~d---iPVV~vS~~~~ 188 (250)
. .+|+.++|+.. |+++||++||++|.+.+.++||| +..+.++++|||+||||+||+|+.+ +||||+++|..
T Consensus 79 ~~~~d~~~~~~~~----~~~~g~~~LA~~i~~~~~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~~~~~~vVpi~~~~~ 153 (277)
T cd07950 79 YEVADEGGGPRDL----PPIRGHAALAQHIAESLVADEFD-LTFFQDKPLDHGCFSPLSLLLPHEDGWPVKVVPLQVGVL 153 (277)
T ss_pred ccccccccCCccC----CCCCCCHHHHHHHHHHHHhcCCC-eeeccCCCCCceeeeeHHHhCcccccCCCceEEEEEEeE
Confidence 3 66777788765 58899999999999999999995 7778899999999999999999866 78999988643
Q ss_pred ---C-CHHHHHHHHHHhccc-----ccCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHH
Q 025580 189 ---H-TGTYHYNIGKALAPL-----KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALL 247 (250)
Q Consensus 189 ---~-~~~~~~~LG~aL~~l-----~derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~ 247 (250)
+ ++++||+||++|+++ +|+||+|||||+|||||.. .++|. .+ ++||++++++++
T Consensus 154 ~~~l~~~~~~~~lG~al~~~i~~~~~d~rv~iIaSG~lSH~l~~-~~~g~--~~--~~~D~~f~~~l~ 216 (277)
T cd07950 154 QFPLPTARRCYKLGQALRRAIESYPEDLKVAVVGTGGLSHQVHG-ERAGF--NN--TEWDMEFLDLIE 216 (277)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEEcCccccCCCC-CCCCC--CC--HHHHHHHHHHHH
Confidence 3 799999999999999 6789999999999999974 34332 22 555566555555
No 24
>cd07369 PydA_Rs_like PydA is a Class III Extradiol ring-cleavage dioxygenase required for the degradation of 3-hydroxy-4-pyridone (HP). This subfamily is composed of Rhizobium sp. PydA and similar proteins. PydA is required for the degradation of 3-hydroxy-4-pyridone (HP), an intermediate in the Leucaena toxin mimosine degradation pathway. It is a member of the class III extradiol dioxygenase family, a group of enzymes that use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=100.00 E-value=1.5e-36 Score=280.77 Aligned_cols=197 Identities=16% Similarity=0.249 Sum_probs=159.2
Q ss_pred ccccceEEEEcCCCCCCCC--CCC------hhHHHHHHHHHHHhhcCCCCEEEEE-eCCCCCC----CCeEEecCCCCcc
Q 025580 48 RLSVMDTFFISHGSPTLSI--DES------LPARGFLQAWQAKVFSQRPNSILVI-SAHWDTD----FPSVNVVQRNDTI 114 (250)
Q Consensus 48 ~~~~~p~~fisHGsP~l~~--~~~------~~~~~~l~~l~~~l~~~~PdaIVvi-S~Hw~~~----~~~I~~~~~~~~~ 114 (250)
|.++.-++++|| ||+++ ++. .++.++++++++++++.+||+|||| |+||... .+.+.++..++..
T Consensus 1 Ma~iv~a~~~sH--~P~i~~~p~~~~~~~~~~~~~a~~~l~~~v~~~~PD~iVV~~sdH~~~~f~d~~P~f~I~~~~~~~ 78 (329)
T cd07369 1 MAKIVAAIGMSH--APGALGWPDAPSPDVRARTEEATLKLGRTLTAARPDVIIAFLDDHFENHFRTNMPTIAIGVAESHS 78 (329)
T ss_pred ChHHheeeecCC--CccccCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCchhhhccccCccEEEeecceee
Confidence 445566788999 66554 342 2667889999999999999999997 9999843 2345555555555
Q ss_pred CCCC----CCCcccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCC--
Q 025580 115 HDFY----GFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMH-- 188 (250)
Q Consensus 115 ~Df~----gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~-- 188 (250)
+||. +|+-. .+++++||++||++|.+.+.++||| +....++++|||++|||++|+|+.++||||||+|..
T Consensus 79 G~~~~~~~~~~~~---~~~~~~gd~eLA~~I~~~l~~~G~d-va~~~~~~~DHG~~vPL~~l~p~~~ipvVpI~in~~~~ 154 (329)
T cd07369 79 GPADQLMEALRVP---KKHYFPGNPEVAEQLLRALVHDSFD-CARMGEIEYGNNLLVPWKLMKPDLDVSVIPIYTNVFSP 154 (329)
T ss_pred ccchhccccCCCC---cccCCCCCHHHHHHHHHHHHHCCCC-eeecCCcCCCccceeeHHHhcCCCCCcEEEEEEeccCC
Confidence 6643 44311 3578899999999999999999995 777778999999999999999999999999999887
Q ss_pred --CCHHHHHHHHHHhcccc-----cCCeEEEEecCCcc-----------------cCcccccCCCCC-------------
Q 025580 189 --HTGTYHYNIGKALAPLK-----EEGVLIIGSGSATH-----------------NLRALQFESSSI------------- 231 (250)
Q Consensus 189 --~~~~~~~~LG~aL~~l~-----derVlIIgSG~lSH-----------------nL~~~~~~~~~~------------- 231 (250)
+++++||+||++|++++ |+||+|||||+||| +|.+..++|++.
T Consensus 155 p~~~~~r~~~lG~AI~~aie~~~~d~rVaiIaSG~LSH~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 234 (329)
T cd07369 155 PLMKYSRAYALGAAVRKAIEDLPDDLRVAFMATGGLSHWPPYWNPNQPETDPFLQRMKEYQTYGKPVLEKDPNLFVDLAA 234 (329)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCccccCCccccccchhhhhhhhhccccCcCCcCcchhhhhhhhhhhh
Confidence 78999999999999986 48999999999999 566666654311
Q ss_pred ----------------Ch-hHHHHHHHHHHHHHcCC
Q 025580 232 ----------------SS-WALEFDNWLKDALLEGR 250 (250)
Q Consensus 232 ----------------~~-~a~eFD~~v~~~i~~Gd 250 (250)
+| .+++||+++++++++||
T Consensus 235 ~~~~~~~~~~~~~~~~~p~i~~~fD~~~l~~l~~gd 270 (329)
T cd07369 235 YEIEMAKKNQWPLNSKHPLVNAAWDRKFLKAYCRGD 270 (329)
T ss_pred hhhhhhhhhcccccccCCccCHHHHHHHHHHHHcCC
Confidence 56 49999999999999987
No 25
>PRK13372 pcmA protocatechuate 4,5-dioxygenase; Provisional
Probab=100.00 E-value=2.5e-36 Score=286.09 Aligned_cols=187 Identities=22% Similarity=0.311 Sum_probs=151.2
Q ss_pred ccceEEEEcCCCCCCCC----CCC-----hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-----C--CeEEecCCCCc
Q 025580 50 SVMDTFFISHGSPTLSI----DES-----LPARGFLQAWQAKVFSQRPNSILVISAHWDTD-----F--PSVNVVQRNDT 113 (250)
Q Consensus 50 ~~~p~~fisHGsP~l~~----~~~-----~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~-----~--~~I~~~~~~~~ 113 (250)
++...+..|| +|.+.. ... .+..++++.+++++++.+||+||||+++|.+. . ++|++++...
T Consensus 150 ~Iv~g~~tSH-~P~ig~A~d~~~~~~~~~~~v~~~~~~~r~~l~~~~PDVvVi~~nDH~~~Ff~d~mP~FaIG~~~~~~- 227 (444)
T PRK13372 150 QISAALFSSH-VPAIGAAIDLGKTEEDYWKKLFAGYDLSREWAKEHLPDVIILVYNDHATAFDLEIIPTFAIGTAAEFP- 227 (444)
T ss_pred ceeeeeccCc-ccccccccccCCCcHHHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhhhcCcccCCCeEEEEccccC-
Confidence 4667888999 776544 111 24567888999999999999999999866553 2 4555554432
Q ss_pred cCCCCCCCcccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCC---CCCEEEeecCCCC-
Q 025580 114 IHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEA---DIPVCQLSVQMHH- 189 (250)
Q Consensus 114 ~~Df~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~---diPVV~vS~~~~~- 189 (250)
-+|+ |+.+. -..++||+++||++|++.|.++||| +..+.++++|||+||||.+|+|++ ++||||||+|...
T Consensus 228 p~d~-g~G~~---~v~~~pG~peLA~~I~~~L~~~GfD-~a~~~erglDHG~~vPL~lm~P~ad~~~IPVVPvsvN~~~~ 302 (444)
T PRK13372 228 PADE-GWGPR---PVPDVIGHPELAAHIAQSVIQDDFD-LTIVNEMDVDHGLTVPLSLMCGDPEAWPCPVIPFAVNVVQY 302 (444)
T ss_pred CCcc-cCCCC---CCCCCCCCHHHHHHHHHHHHhcCCC-hhhccCCCCCchhhhhHHHhCCcccCCCCCeEEEEecCCCC
Confidence 2565 33211 1147899999999999999999996 778899999999999999999995 4999999999885
Q ss_pred ---CHHHHHHHHHHhccccc------CCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHc
Q 025580 190 ---TGTYHYNIGKALAPLKE------EGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLE 248 (250)
Q Consensus 190 ---~~~~~~~LG~aL~~l~d------erVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~ 248 (250)
++++||+|||+|+++++ +||+|||||++||||...+. ..|++|||+|+++.+++
T Consensus 303 Plps~~R~~~LG~AL~~lres~~~D~erVlIIGSGGLSHnL~~~~~-----g~in~eFD~~~ld~L~~ 365 (444)
T PRK13372 303 PVPSGRRCYELGQAIRRAIDKWDADPLNVQIWGTGGMSHQLQGPRA-----GLINEEFDNAFLDHLIA 365 (444)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcccccCCEEEEecCcccCCCCCCCC-----ccchHHHHHHHHHHHHh
Confidence 89999999999999987 99999999999999975432 36899999999999985
No 26
>PRK13367 protocatechuate 4,5-dioxygenase; Provisional
Probab=100.00 E-value=2.1e-36 Score=286.11 Aligned_cols=188 Identities=21% Similarity=0.359 Sum_probs=149.6
Q ss_pred ccccceEEEEcCCCCCCCCC----CC-h----hHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-----C--CeEEecCCC
Q 025580 48 RLSVMDTFFISHGSPTLSID----ES-L----PARGFLQAWQAKVFSQRPNSILVISAHWDTD-----F--PSVNVVQRN 111 (250)
Q Consensus 48 ~~~~~p~~fisHGsP~l~~~----~~-~----~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~-----~--~~I~~~~~~ 111 (250)
|+++...++.|| +|.+-.. .+ . +..++++.+++++++.+||+||+|+++|.+. . ++|++++..
T Consensus 1 Ma~iv~g~~~SH-~P~ig~a~~~~~~~~~~~~~v~~~~~~~r~~l~~~~PDvvVv~~nDH~~~Ff~d~~P~F~IG~~~~~ 79 (420)
T PRK13367 1 MARIIGGIAVSH-TPTIGFAVDHNKQQDPAWAPIFESFAPLRRWLEEKKPDVLLYIFNDHVTSFFFDHYSAFALGIDEQY 79 (420)
T ss_pred ChHHHhhhcCCC-CcccccccccCCCchHHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhhhcCcccCCCeEEEecccc
Confidence 455556678899 7765432 11 1 5567888999999999999999999976553 2 566666655
Q ss_pred CccCCCCCCCcccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCC---CCEEEeecCCC
Q 025580 112 DTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEAD---IPVCQLSVQMH 188 (250)
Q Consensus 112 ~~~~Df~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~d---iPVV~vS~~~~ 188 (250)
. .|||+|||+++ |+++|+++||++|++.|.++||| ++.+.++++|||+||||++|+|+.+ +||||+++|..
T Consensus 80 ~-~~D~~g~P~~l----y~~~G~peLA~~I~~~L~~~gfD-~a~~~~~~lDHG~~VPL~~l~p~ad~~P~~VVPi~invv 153 (420)
T PRK13367 80 A-VADEGGGPRDL----PPVRGHAALSRHIGASLMADEFD-MSFFQDKPLDHGLFSPLSALLPHDDGWPVQVVPLQVGVL 153 (420)
T ss_pred c-ccccCCCcccc----CCCCCCHHHHHHHHHHHHhcCCC-eecccCCCCCcchhhhHHHhCCccccCCCceeeeeecee
Confidence 4 79999999987 59999999999999999999995 7888999999999999999999875 66999988753
Q ss_pred ---C-CHHHHHHHHHHhcccc-----cCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHH
Q 025580 189 ---H-TGTYHYNIGKALAPLK-----EEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLK 243 (250)
Q Consensus 189 ---~-~~~~~~~LG~aL~~l~-----derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~ 243 (250)
+ ++++||+||++|++++ |+||+|||||+|||||..... +....+|+.+|.+|+.
T Consensus 154 q~Plps~~r~~~LG~AL~~aie~~~~d~rVlIIgSGgLSH~L~~~~~-g~~n~~wD~~Fld~L~ 216 (420)
T PRK13367 154 QFPIPSARRCYKLGQALRRAIESYPEDLKVAIVATGGLSHQVHGERC-GFNNPEWDAQFLDLLV 216 (420)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEEeCccccCCCCCCC-CCCCHHHHHHHHHHHH
Confidence 3 6999999999999995 689999999999999965432 3222355555555554
No 27
>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=100.00 E-value=2.2e-35 Score=267.99 Aligned_cols=189 Identities=20% Similarity=0.314 Sum_probs=142.4
Q ss_pred ccccceEEEEcCCCCCCCCCC-----C----hhHHHHHHHHHHHhhcCCCCEEEEE-eCCCCCC----CCeEEecCCCCc
Q 025580 48 RLSVMDTFFISHGSPTLSIDE-----S----LPARGFLQAWQAKVFSQRPNSILVI-SAHWDTD----FPSVNVVQRNDT 113 (250)
Q Consensus 48 ~~~~~p~~fisHGsP~l~~~~-----~----~~~~~~l~~l~~~l~~~~PdaIVvi-S~Hw~~~----~~~I~~~~~~~~ 113 (250)
|.++.-++++|| .|.+...+ . .++.++++++++++++.+||+|||| |+|...+ .+.+.++.....
T Consensus 1 M~~iv~~~~~sH-~P~~~~~~~~~~~~~~~~~~~~~a~~~i~~~v~~~~PDviVvi~sdH~~~f~~d~~p~f~Ig~~~~~ 79 (279)
T PRK13365 1 MASIIGGIGTSH-VPTIGVAYDKGKQQDPAWKPLFDGYEPVAAWLAEQKADVLVFFYNDHCTTFFFDLYPTFALGVGERF 79 (279)
T ss_pred CHHHHhhhcCCC-CcccccccccCcccchHHHHHHHHHHHHHHHHHHhCCCEEEEEcCchHHHhccccCCceEEEecccc
Confidence 344455678899 77666511 1 3667889999999999999999999 5564332 233444433332
Q ss_pred -cCCCCCCCcccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCC---CCEEEeecCCCC
Q 025580 114 -IHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEAD---IPVCQLSVQMHH 189 (250)
Q Consensus 114 -~~Df~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~d---iPVV~vS~~~~~ 189 (250)
..|| |.+..- ..+++||++||++|.+.+.++||+ +....++++|||+||||+||+|+.+ +||||+++|+..
T Consensus 80 ~~~~~-g~~~~~---~~~~~g~~eLA~~i~~~~~~~g~~-~~~~~~~~lDHG~~vPL~~l~~~~~~~~~pvVpi~in~~~ 154 (279)
T PRK13365 80 PVADE-GAGLRP---LPPIRGDVQLQAHIAECLVNDEFD-LTVFQDKPIDHGCAAPLPLLWPHVPDWPGTVVPIAINVLQ 154 (279)
T ss_pred ccccc-ccCCCC---CCCCCCCHHHHHHHHHHHHHcCCC-eeeccCCCCCchhhhHHHHhCCccccCCCCeEEEEEeccc
Confidence 3443 222211 136899999999999999999995 7777889999999999999999766 999999988544
Q ss_pred ----CHHHHHHHHHHhcccc-----cCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHH
Q 025580 190 ----TGTYHYNIGKALAPLK-----EEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALL 247 (250)
Q Consensus 190 ----~~~~~~~LG~aL~~l~-----derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~ 247 (250)
++++||+||++|++++ |+||+|||||+|||||.... +| +.+ ++||++++++++
T Consensus 155 ~p~~~~~~~~~lG~al~~~i~~~~~d~rV~iIaSG~LSH~l~~~~-~g--~~~--~~~D~~f~~~l~ 216 (279)
T PRK13365 155 YPLPTARRCYRLGQALRRAIESYPEDLRVVVVGTGGLSHQIHGER-SG--FNN--TEWDMEFLDRFQ 216 (279)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEEeCccccCCCCCC-cc--CCC--HHHHHHHHHHHh
Confidence 6899999999999993 68999999999999998633 33 222 778888888775
No 28
>PRK13370 mhpB 3-(2,3-dihydroxyphenyl)propionate dioxygenase; Provisional
Probab=100.00 E-value=1.4e-34 Score=266.32 Aligned_cols=188 Identities=20% Similarity=0.289 Sum_probs=157.2
Q ss_pred EEEEcCCCCCCCCCCC-----hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-----CCeEEecCCCCccCCCCCCCcc
Q 025580 54 TFFISHGSPTLSIDES-----LPARGFLQAWQAKVFSQRPNSILVISAHWDTD-----FPSVNVVQRNDTIHDFYGFPKQ 123 (250)
Q Consensus 54 ~~fisHGsP~l~~~~~-----~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~-----~~~I~~~~~~~~~~Df~gFp~~ 123 (250)
.++.|| +|.+..++. .+..++|+++++++++.+||+|||+||||.+. .+.|+++......+||++|+.
T Consensus 5 ~~~~sH-~P~~~~~~~~~~~~~~v~~a~~~l~~~l~~~~PD~iVIigpdH~~~f~~d~~P~f~i~~~~~~~gd~~~~~g- 82 (313)
T PRK13370 5 LVCLSH-SPLVGYVDPAQEVLAEVNAVIAAAREFVAAFDPELVVLFAPDHYNGFFYDVMPPFCIGVSATAVGDYGTAAG- 82 (313)
T ss_pred eeecCC-CCccCCCCCChHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCcccccccccCCceEeccCCCcCcccccCCC-
Confidence 477899 887765332 25568899999999999999999999987776 457777777788999999876
Q ss_pred cccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCC-CCCCEEEeecCC----CCCHHHHHHHH
Q 025580 124 MYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPE-ADIPVCQLSVQM----HHTGTYHYNIG 198 (250)
Q Consensus 124 ~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~-~diPVV~vS~~~----~~~~~~~~~LG 198 (250)
+.++|++||++|.+.+.+.|+| +....++++|||+|+||++|+|+ .++|||||++|+ ..++++||+||
T Consensus 83 ------~~~~d~eLA~~i~~~~~~~g~d-~a~~~~~~lDHG~~vPL~~l~~~~~~~pVVpI~vn~~~~p~~s~~r~~~lG 155 (313)
T PRK13370 83 ------PLPVPSDLAEALAEAVLDSGID-VAVSYRMQVDHGFAQPLEFLLGGLDAYPVIPVFINSVAAPLPPFRRVRLLG 155 (313)
T ss_pred ------CCCCCHHHHHHHHHHhHhcCCC-hhhcCCcCCCEeHHHHHHHhcCCCCCceEEEEeecCCCCCcCCHHHHHHHH
Confidence 4688999999999999999996 77778999999999999999997 459999999985 45789999999
Q ss_pred HHhcccc---cCCeEEEEecCCcccCcccc-------------------------------------c-CCCCCChhHHH
Q 025580 199 KALAPLK---EEGVLIIGSGSATHNLRALQ-------------------------------------F-ESSSISSWALE 237 (250)
Q Consensus 199 ~aL~~l~---derVlIIgSG~lSHnL~~~~-------------------------------------~-~~~~~~~~a~e 237 (250)
++|+++. ++||+|||||||||++.... + +.+++.|.+++
T Consensus 156 ~aI~~ai~~~d~rVlvIaSGdLSH~~~~~~~~~~d~~~~erl~~~~~~~~~~~~~~~~~~~~~~~~~~~gp~~~~p~~~~ 235 (313)
T PRK13370 156 EAVGRFLATLDKRVLFLGSGGLSHDPPVPELATADPEVRERLIAGRNPTPEERAARQQRVIAAARIFAAGQSALHPLNPE 235 (313)
T ss_pred HHHHHHHHhcCCCEEEEEeCCCcCCCchHhHhhccHHHHHHHHccCCccHHHHHHHHhhHHhhhhhcccCcccCCCCCHH
Confidence 9988863 78999999999999842111 1 12456799999
Q ss_pred HHHHHHHHHHcCC
Q 025580 238 FDNWLKDALLEGR 250 (250)
Q Consensus 238 FD~~v~~~i~~Gd 250 (250)
||+++++.+++||
T Consensus 236 ~D~~~l~~l~~gd 248 (313)
T PRK13370 236 WDRAFLDLLESGD 248 (313)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999999987
No 29
>cd07365 MhpB_like Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), which catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate. 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB) catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate, yielding the product 2-hydroxy-6-oxo-nona-2,4-diene 1,9-dicarboxylate. It is an essential enzyme in the beta-phenylpropionic degradation pathway, in which beta-phenylpropionic is first hydrolyzed to produce 2,3-dihydroxyphenylpropionate. The enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the ca
Probab=100.00 E-value=3.1e-34 Score=263.81 Aligned_cols=189 Identities=22% Similarity=0.307 Sum_probs=156.3
Q ss_pred eEEEEcCCCCCCCCCCC-----hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-----CCeEEecCCCCccCCCCCCCc
Q 025580 53 DTFFISHGSPTLSIDES-----LPARGFLQAWQAKVFSQRPNSILVISAHWDTD-----FPSVNVVQRNDTIHDFYGFPK 122 (250)
Q Consensus 53 p~~fisHGsP~l~~~~~-----~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~-----~~~I~~~~~~~~~~Df~gFp~ 122 (250)
-+++.|| +|.+....+ .+..++++++++++++.+||+||||||||... .++|+++......+||.+|+.
T Consensus 4 ~~~~~sH-~p~~~~~~~~~~~~~~~~~a~~~l~~~l~~~~PD~iVIigphH~~~f~~~~~p~f~i~~a~~~~gd~~~p~g 82 (310)
T cd07365 4 ALICMSH-SPLLGFNDPAPEVVAEVDAAFAAARAFVAAFDPELVVLFAPDHYNGFFYDLMPPFCIGTAATAVGDYGTLAG 82 (310)
T ss_pred eeeeeCC-CcccCCCCCchHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCCcccccccccCCceEeeccCccccccccCCC
Confidence 3588999 876654332 25568899999999999999999999998874 247777777788999999977
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCC-CCCCEEEeecCCC----CCHHHHHHH
Q 025580 123 QMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPE-ADIPVCQLSVQMH----HTGTYHYNI 197 (250)
Q Consensus 123 ~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~-~diPVV~vS~~~~----~~~~~~~~L 197 (250)
+.++|++||++|.+.+.+.||| +....++++|||+||||+||++. .++|||||++|.. .++++||+|
T Consensus 83 -------~~~~d~eLA~~L~~~~~~~g~d-~a~~~~~~lDHg~~VPL~fL~~~~~~~pVVPI~vn~~~~P~~s~~r~~~l 154 (310)
T cd07365 83 -------PLNVPRDLAEDLARHVLDSGID-VAISHRMQVDHGFTQPLEELFGGLDRYPVIPIFVNSVAPPLAPMRRARAL 154 (310)
T ss_pred -------CCCCCHHHHHHHHHhhhhcCCC-hhhccCCCCCcchHhhHHHHhCCCCCCeEEEEEecCCCCCCCCHHHHHHH
Confidence 4568999999999999999995 77778899999999999999987 4699999999864 567999999
Q ss_pred HHHhcccc---cCCeEEEEecCCcccCcccc--------------------------------------cCCCCCChhHH
Q 025580 198 GKALAPLK---EEGVLIIGSGSATHNLRALQ--------------------------------------FESSSISSWAL 236 (250)
Q Consensus 198 G~aL~~l~---derVlIIgSG~lSHnL~~~~--------------------------------------~~~~~~~~~a~ 236 (250)
|++|+++. ++||+|||||||||++.... .+.+++.|.++
T Consensus 155 G~al~~ai~~~d~rV~VIaSGdLSH~~~~~~~~~~d~~~~~~l~~~d~~~~~~~~~~~~~i~~~~~~~~~gp~~~~p~~~ 234 (310)
T cd07365 155 GEAVGRFLAKLDKRVLFLGSGGLSHDPPVPQLATAPPEVAERLIAGRNPTPEARAARQQRVIAAAKAFAAGDSTLMPLNP 234 (310)
T ss_pred HHHHHHHHHhcCCCEEEEEcCcccCCCchhhhhcccHHHHHHHHhcccchHHHHHHHHhhhhhhhhhcccCcccCCCCCH
Confidence 99999973 57999999999999941111 12234678999
Q ss_pred HHHHHHHHHHHcCC
Q 025580 237 EFDNWLKDALLEGR 250 (250)
Q Consensus 237 eFD~~v~~~i~~Gd 250 (250)
+||+++++++++||
T Consensus 235 ~fD~~~l~~~~~gd 248 (310)
T cd07365 235 EWDRAFLDLLASGD 248 (310)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999999987
No 30
>cd07366 3MGA_Dioxygenase Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate. 3-O-Methylgallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate (3MGA) between carbons 2 and 3. 3-O-Methylgallate Dioxygenase is a key enzyme in the syringate degradation pathway, in which the syringate is first converted to 3-O-Methylgallate by O-demethylase. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=100.00 E-value=3.8e-33 Score=258.17 Aligned_cols=167 Identities=19% Similarity=0.227 Sum_probs=138.0
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEeCCCC-CC----CCeEEecCCCCccCCCCCC------Cc------ccccccCCCCC
Q 025580 71 PARGFLQAWQAKVFSQRPNSILVISAHWD-TD----FPSVNVVQRNDTIHDFYGF------PK------QMYDLKYPAPG 133 (250)
Q Consensus 71 ~~~~~l~~l~~~l~~~~PdaIVviS~Hw~-~~----~~~I~~~~~~~~~~Df~gF------p~------~~y~~~y~~~G 133 (250)
...++++++++++++.+||+|||||||+. .+ .+.|+++..++..+|+... |+ ..-+.+++++|
T Consensus 70 ~~~~a~~~~~~~i~~~~PDvlVIispDH~~~f~~~~~P~f~I~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 149 (328)
T cd07366 70 RCQAALDRLADFIRAARIDVAVIVGDDQKELFDEALLPAFAIYYGDTITNGPRTREQLDRMPPHEAAAGYAPDEARTYPC 149 (328)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEcCccHhhhccccCCceEEeecceeecChhhccccccccccccccccCCCCCcCCCC
Confidence 55688999999999999999999999654 33 2466666666666665430 00 11235678899
Q ss_pred CHHHHHHHHHHHHhCCCCcccc----cCCCCcccchhhhhhhhcCCCCCCEEEeecCCCC-----CHHHHHHHHHHhccc
Q 025580 134 APELAKRVKDLLKASGIKHVNE----DRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHH-----TGTYHYNIGKALAPL 204 (250)
Q Consensus 134 ~~~LA~~i~~~l~~~Gid~~~~----~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~-----~~~~~~~LG~aL~~l 204 (250)
+++||++|.+.+.++||| +.. +.++++|||.|+|+.+++|+.++||||||+|... ++++||+||++|+++
T Consensus 150 d~eLA~~I~~~l~~~G~d-v~~~~~~~~~~~lDHG~~~~l~~~~p~~~iPVVpisin~~~~p~~ps~~r~y~lG~aL~~a 228 (328)
T cd07366 150 HPELARHLIKHTVADGFD-VAALDHLPDTVGIPHAFGFIYRRIMGDLVIPVVPVLINTFYPPNQPSARRCFEFGRAVARA 228 (328)
T ss_pred CHHHHHHHHHHHHHcCCC-eeeecccCcccCCCcchhhHHHHhcCCCCCcEEEEeecCCCCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999995 654 3345789999999999999999999999998854 679999999999999
Q ss_pred -----ccCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580 205 -----KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR 250 (250)
Q Consensus 205 -----~derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd 250 (250)
+|+||+|||||+||||| ++++||+|+++.+++||
T Consensus 229 i~~~~~d~rV~IIaSGgLSH~l------------~~~eFD~~~l~~l~~gD 267 (328)
T cd07366 229 IRSWPGDARVGVIASGGLSHFV------------IDEEFDRRILDALRNRD 267 (328)
T ss_pred HHhcCCCCCEEEEEeCccccCC------------ChHHHHHHHHHHHHcCC
Confidence 47999999999999998 46999999999999987
No 31
>PRK13363 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=100.00 E-value=4.3e-33 Score=258.37 Aligned_cols=167 Identities=16% Similarity=0.196 Sum_probs=140.3
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-----CCeEEecCCCCccCCCCCC--------------CcccccccCCC
Q 025580 71 PARGFLQAWQAKVFSQRPNSILVISAHWDTD-----FPSVNVVQRNDTIHDFYGF--------------PKQMYDLKYPA 131 (250)
Q Consensus 71 ~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~-----~~~I~~~~~~~~~~Df~gF--------------p~~~y~~~y~~ 131 (250)
...++++++++++++.+||+|||||||+... .+.|+++..+...+|+..| |...-+.++++
T Consensus 72 ~~~~a~~~~~~~i~~~~PDvlViispdh~~~F~~~~~p~f~I~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 151 (335)
T PRK13363 72 ACEAAIERMRDAIEAARIDVAVIVGNDQMELFTTDNNPAFAIYYGETIRNNPASREKLPSLPPGVKAAMPGYMPDAETTY 151 (335)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEcCCchhhcccccCCceEEeecceeccchhhccccccccccccccccccCCCCCcCC
Confidence 5568899999999999999999999998432 3666666666777766554 22333467889
Q ss_pred CCCHHHHHHHHHHHHhCCCCccc----ccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCCC-----HHHHHHHHHHhc
Q 025580 132 PGAPELAKRVKDLLKASGIKHVN----EDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHT-----GTYHYNIGKALA 202 (250)
Q Consensus 132 ~G~~~LA~~i~~~l~~~Gid~~~----~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~~-----~~~~~~LG~aL~ 202 (250)
+||++||++|.+.+.++||| +. .+.++++|||+|+|+++++|+.++|||||++|...+ +++||+||++|+
T Consensus 152 ~gd~eLA~~I~~~l~~~G~d-~~~~~~~~~~~glDHG~~~pl~~l~p~~dipVVpIsl~~~~~P~~~s~~~~~~lG~aL~ 230 (335)
T PRK13363 152 PVVPELARHMIRRLVDDGFD-ITALDRLPDGEGEGHAFGFVHRQLMKDNVLPTVPVLVNTFYPPNQPTPRRCIALGRSLR 230 (335)
T ss_pred CCCHHHHHHHHHHHHHcCCC-eeeecccccccCCCccchhhHHHhcCCCCCcEEEEEeccCCCcCCCCHHHHHHHHHHHH
Confidence 99999999999999999995 65 234567999999999999999999999999987544 599999999999
Q ss_pred cc-----ccCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580 203 PL-----KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR 250 (250)
Q Consensus 203 ~l-----~derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd 250 (250)
++ +|+||+|||||+|||++. +++||+|++++|++||
T Consensus 231 ~~i~~~~~d~rVlIIaSGdLSH~l~------------~~efD~~~l~~l~~~D 271 (335)
T PRK13363 231 RAIRSWPEDARVAVIASGGLSHFVI------------DEELDRLIIDAIRAKD 271 (335)
T ss_pred HHHHhcCcCCCEEEEEeCccccCCc------------HHHHHHHHHHHHHcCC
Confidence 98 468999999999999983 5799999999999986
No 32
>PRK13373 putative dioxygenase; Provisional
Probab=99.97 E-value=2.8e-31 Score=244.45 Aligned_cols=173 Identities=18% Similarity=0.219 Sum_probs=132.3
Q ss_pred ccccceEEEEcCCCCCCC-CCC-C-----hhHHHHHHHHHHHhhcCCCCEEEEEeC-CCCCC----CCeEEecCCCCccC
Q 025580 48 RLSVMDTFFISHGSPTLS-IDE-S-----LPARGFLQAWQAKVFSQRPNSILVISA-HWDTD----FPSVNVVQRNDTIH 115 (250)
Q Consensus 48 ~~~~~p~~fisHGsP~l~-~~~-~-----~~~~~~l~~l~~~l~~~~PdaIVviS~-Hw~~~----~~~I~~~~~~~~~~ 115 (250)
|++....+++|| +|.+. ..+ . .+..++++++++++++.+||+||||++ ||..+ .+.++++......+
T Consensus 1 Ma~iv~~~~~SH-sPl~~g~~d~p~~~~~~~v~~a~~~ir~~i~e~kPDVvVv~~nDH~~~Ff~d~mP~F~IG~a~~~~g 79 (344)
T PRK13373 1 MAKIVAGIGMSH-APGALGWPDAPSASVRRRLLQAADRLGRSLDAARPDVIIAFLDDHFENHFRSLMPTVGIGVADSHPG 79 (344)
T ss_pred ChHHHhhhcCCC-CCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhhhhccccCCceEEEecccccC
Confidence 344444578899 88762 222 1 255688999999999999999999955 66554 24444444445556
Q ss_pred CCCCCCcc-cccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCC----C
Q 025580 116 DFYGFPKQ-MYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHH----T 190 (250)
Q Consensus 116 Df~gFp~~-~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~----~ 190 (250)
|+.++-.. -....-+++|+++||++|++.+.++||| ++.+.++.+|||+++||.+|+|+.++|||||.+|+.. +
T Consensus 80 ~~~~~g~~~~~~~~~~~~g~~elA~~l~~~l~~~gfD-va~s~~m~vDHg~~vPl~~l~~~~~~pvVPV~vN~~~~P~p~ 158 (344)
T PRK13373 80 PATQWLEALRLTRQERFGGAPEIAERLLRSLVADGYD-VARMGEIEYGNNLMVPWKLMAPRSAPAIIPVFTNVFSPPVMP 158 (344)
T ss_pred CccccccccCCCCCCCCCCCHHHHHHHHHHHHHcCCC-eeeeeceeCCcceeeeHHHhCCCCCCCeEEEEEecccCCCCC
Confidence 66532100 0001127799999999999999999996 8889999999999999999999988999999999754 5
Q ss_pred HHHHHHHHHHhcccc-----cCCeEEEEecCCcccCc
Q 025580 191 GTYHYNIGKALAPLK-----EEGVLIIGSGSATHNLR 222 (250)
Q Consensus 191 ~~~~~~LG~aL~~l~-----derVlIIgSG~lSHnL~ 222 (250)
.+|||+||++|+++. |+||+|||||+|||++.
T Consensus 159 ~~R~~~lG~ai~~ai~~~~~d~rV~~~~sGgLSH~p~ 195 (344)
T PRK13373 159 YRRAYAFGAALRNAAEALDADLRVAFMATGGMSHWPP 195 (344)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEecCcccCCCc
Confidence 799999999999982 58999999999999753
No 33
>COG3885 Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=1.7e-18 Score=151.41 Aligned_cols=185 Identities=17% Similarity=0.140 Sum_probs=140.9
Q ss_pred eEEEEcCCCCCCCCCCC---hhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecCCCCccCCCCCCCcccccccC
Q 025580 53 DTFFISHGSPTLSIDES---LPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKY 129 (250)
Q Consensus 53 p~~fisHGsP~l~~~~~---~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~~~~~~~~Df~gFp~~~y~~~y 129 (250)
..+.++|| +-+.-+++ +.+.++++++++.+ ..++++||||||.......+++.....+.+-++.+-...-+.
T Consensus 4 giyv~PHg-dEii~~~~~e~~~l~kA~k~i~~~~--~~seT~VvIsPHgi~ldd~iaviys~~l~g~~~~~k~~~i~~-- 78 (261)
T COG3885 4 GIYVIPHG-DEIIDPEDEESRKLNKAIKEIASDD--KGSETYVVISPHGIRLDDYIAVIYSEYLSGLPYRTKHHPIRK-- 78 (261)
T ss_pred cEEeccCC-ccccCCchhHHHHHHHHHHHHHccc--CCCceEEEEcCCceeeechhhHHhHHhhcccccccccCcchh--
Confidence 45789996 33333333 35667777777664 339999999999988877776655555555555553333333
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCccc---c------cCCCCcccchhhhhhhhcCCCCCCEEEeecCCCCCHHHHHHHHHH
Q 025580 130 PAPGAPELAKRVKDLLKASGIKHVN---E------DRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKA 200 (250)
Q Consensus 130 ~~~G~~~LA~~i~~~l~~~Gid~~~---~------~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~~~~~~~~LG~a 200 (250)
....|.+||+.|.+..+.+ | ++. . ..+..||||.++||+|+. ...||.+.-.. ++-++.++||..
T Consensus 79 ey~~dreLa~~I~~~a~g~-~-p~v~it~~~lkg~~s~~~Ld~G~~IPL~Flk---~rrIV~lt~ar-l~~~~l~~Fg~~ 152 (261)
T COG3885 79 EYKNDRELADKIYEEAKGQ-F-PLVCITFSILKGNYSRCPLDWGSLIPLYFLK---RRRIVLLTPAR-LSREILVKFGDN 152 (261)
T ss_pred hhhccHHHHHHHHHHhccC-C-ceEEEechhhcCcCCccccccccccchhhcc---ceeEEEechhh-ccHHHHHHHHHH
Confidence 3366999999999998766 5 332 1 234789999999999994 36788888754 999999999999
Q ss_pred hcccc---cCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580 201 LAPLK---EEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR 250 (250)
Q Consensus 201 L~~l~---derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd 250 (250)
|.++. +++|.+|.|++.+|...+.+|+| |.+.+.+||+-+++.+.+||
T Consensus 153 l~~~le~~~~ki~lIiSaD~aHth~edGPYG--Ys~~se~yDk~iv~~lks~n 203 (261)
T COG3885 153 LGKALEEYERKISLIISADHAHTHDEDGPYG--YSEESEEYDKIIVDSLKSGN 203 (261)
T ss_pred HHHHHHHhhcceEEEEecccccccCCCCCCC--CChhHHHHHHHHHHHhcccC
Confidence 88873 48999999999999999999966 68999999999999999886
No 34
>cd07361 MEMO_like Memo (mediator of ErbB2-driven cell motility) is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility. This subfamily is composed of Memo (mediator of ErbB2-driven cell motility) and similar proteins. Memo is a protein that is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility. It is required for the ErbB2-driven cell mobility and is found in protein complexes with cofilin, ErbB2 and PLCgamma1. However, Memo is not homologous to any known signaling proteins, and its function in ErbB2 signaling is not known. Structural studies show that Memo binds directly to a specific ErbB2-derived phosphopeptide. Memo is homologous to class III nonheme iron-dependent extradiol dioxygenases, however, no metal binding or enzymatic activity can be detected for Memo. This subfamily also contains a few members containing a C-terminal AMMECR1-like domain. The AMMECR1 protein was proposed to be a regulatory factor that is potentia
Probab=99.78 E-value=3.5e-18 Score=153.85 Aligned_cols=166 Identities=16% Similarity=0.128 Sum_probs=125.0
Q ss_pred eEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecCCCCccCCCCCCCcccccccCCCC
Q 025580 53 DTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAP 132 (250)
Q Consensus 53 p~~fisHGsP~l~~~~~~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~~~~~~~~Df~gFp~~~y~~~y~~~ 132 (250)
-.+.++|.+..-.. .-+..+++.+. ..+||+|||++|||......+.+.........++ +.+
T Consensus 37 ~~~i~PHagy~ysG---~~aa~ay~~l~----~~~p~~vvilgP~H~~~~~~~~~~~~~~~~TPlG-----------~v~ 98 (266)
T cd07361 37 KAIIVPHAGYVYSG---PVAAHAYAALD----PGKPKRVVILGPSHTGYGRGCALSSAGAWETPLG-----------DVP 98 (266)
T ss_pred eEEEeCCCCccccH---HHHHHHHHHhc----cCCCCEEEEECCCCCCCCCceeeCCCCCeeCCCc-----------CCc
Confidence 36888996644333 12234555554 5799999999999888765555544333222221 567
Q ss_pred CCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCC-CCCCEEEeecCCCCCHHHHHHHHHHhccc-ccCCeE
Q 025580 133 GAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPE-ADIPVCQLSVQMHHTGTYHYNIGKALAPL-KEEGVL 210 (250)
Q Consensus 133 G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~-~diPVV~vS~~~~~~~~~~~~LG~aL~~l-~derVl 210 (250)
.|.+++++|.+.. +++ .........|||+.|||.|+... .++|||||.+ ...++++++++|++|+++ .+++++
T Consensus 99 vd~~l~~~L~~~~---~~~-~~~~~~~~~EHs~EvqLpfLq~~~~~~~iVPi~v-g~~~~~~~~~~g~~l~~~~~~~~~~ 173 (266)
T cd07361 99 VDRELVEELLKLG---GFI-VDDELAHEEEHSLEVQLPFLQYLLPDFKIVPILV-GDQSPEAAEALAEALSKYLLDPDTL 173 (266)
T ss_pred cCHHHHHHHHhcC---Ccc-ccCcchhhhhceeeeHHHHHHHHcCCCeEEEEEe-CCCCHHHHHHHHHHHHHHhcCCCeE
Confidence 7999999987654 552 22235677999999999997443 4899999999 567999999999999997 579999
Q ss_pred EEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580 211 IIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR 250 (250)
Q Consensus 211 IIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd 250 (250)
||+|||+||++.. +.+++||+.+++.|+++|
T Consensus 174 iV~SsDlSH~~~~---------~~a~~~D~~~i~~i~~~d 204 (266)
T cd07361 174 IVISSDFSHYGPR---------ESAERLDRKAIEAILALD 204 (266)
T ss_pred EEEeCCCCCcCCH---------HHHHHHHHHHHHHHHcCC
Confidence 9999999998755 669999999999999886
No 35
>PRK00782 hypothetical protein; Provisional
Probab=99.60 E-value=1.7e-14 Score=130.34 Aligned_cols=160 Identities=19% Similarity=0.174 Sum_probs=114.3
Q ss_pred EEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecCCCCccCCCCCCCcccccccCCCCC
Q 025580 54 TFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAPG 133 (250)
Q Consensus 54 ~~fisHGsP~l~~~~~~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~~~~~~~~Df~gFp~~~y~~~y~~~G 133 (250)
.+.++|-+-.-.. .-+..+++.+ ..||+|||++|||......+.+.... | .-|=. +.+.
T Consensus 39 ~ii~PHAGy~ySG---~~aa~ay~~l------~~p~~vvilGp~H~~~~~~~av~~~~-----~-~TPlG------~v~v 97 (267)
T PRK00782 39 GAVVPHAGYVYSG---RTAARVYAAL------PEAETFVIIGPNHTGLGSPVAVSPEG-----W-KTPLG------DVEV 97 (267)
T ss_pred EEEeCCCCCcccH---HHHHHHHHhc------CCCCEEEEECCCCCCCCCCeEEecCc-----c-cCCCc------CCcC
Confidence 5778995532222 1122334433 34999999999888877766664322 1 11222 5677
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCC--CCCCEEEeecCCCCCHHHHHHHHHHhcccc---cCC
Q 025580 134 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPE--ADIPVCQLSVQMHHTGTYHYNIGKALAPLK---EEG 208 (250)
Q Consensus 134 ~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~--~diPVV~vS~~~~~~~~~~~~LG~aL~~l~---der 208 (250)
|.+++++|...+ +. ..+.....||++-|+|-|+..- .++|||||.+ ...++++++++|++|+++. +++
T Consensus 98 D~~l~~~L~~~~----~~--~~~~ah~~EHSiEvqlPFLq~~~~~~~~iVPI~v-g~~~~~~~~~lg~~L~~~~~~~~~~ 170 (267)
T PRK00782 98 DEELAKALASGI----ID--LDELAHKYEHSIEVQLPFLQYLFGKDFKIVPICL-GMQDEETAREVGEAIAEAIEELGKK 170 (267)
T ss_pred CHHHHHHHHHhh----hc--cchhhhhhhceEEecHHHhhHhhcCCCeEEEEEc-CCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 999999997221 11 1223456899999999665432 4899999998 5788999999999999862 578
Q ss_pred eEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580 209 VLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR 250 (250)
Q Consensus 209 VlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd 250 (250)
++||+|||+||+.. .+.+++||+.+.+.|+++|
T Consensus 171 vliIaSsDlSH~~~---------~~~a~~~D~~~i~~I~~~d 203 (267)
T PRK00782 171 VVVIASSDFTHYEP---------AERAKEKDMILIEAILDLD 203 (267)
T ss_pred EEEEEeCCCcCcCC---------HHHHHHHHHHHHHHHHcCC
Confidence 99999999999753 3678999999999999987
No 36
>COG1355 Predicted dioxygenase [General function prediction only]
Probab=98.50 E-value=5.6e-06 Score=75.19 Aligned_cols=166 Identities=19% Similarity=0.221 Sum_probs=110.3
Q ss_pred ceEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecCCCCccCCCCCCCcccccccCCC
Q 025580 52 MDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPA 131 (250)
Q Consensus 52 ~p~~fisHGsP~l~~~~~~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~~~~~~~~Df~gFp~~~y~~~y~~ 131 (250)
...+.++|-+ ..+-.. -+...+..+.+ .+||+||+++|.|.-.+..+.+... ++|.- | += +.
T Consensus 46 ~~~~v~PHAG--y~ySG~-taa~~y~~l~~----~~~~~vVIlGPnHtg~g~~vsv~~~----g~w~T-P--LG----~v 107 (279)
T COG1355 46 AIGIVVPHAG--YRYSGP-TAAHVYSALDE----GEPDTVVILGPNHTGLGSPVSVSPE----GEWET-P--LG----DV 107 (279)
T ss_pred ceEEEcCCCC--cEecch-hHHHHHHHhhc----CCCCEEEEECCCCCCCCCceEEecC----Ccccc-C--CC----Ce
Confidence 4467778833 222121 11223444332 7999999999966666666655321 11110 1 11 44
Q ss_pred CCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhh---hhhcCCCCCCEEEeecCCCCCHHHHHHHHHHhcccc-cC
Q 025580 132 PGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPL---MLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLK-EE 207 (250)
Q Consensus 132 ~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL---~~l~p~~diPVV~vS~~~~~~~~~~~~LG~aL~~l~-de 207 (250)
..|.|+++.|.+. .++. ........-.|+.=|=| .++|++ +..||||.+ ...+.+-..++|+++.++. |.
T Consensus 108 ~vD~e~~~~l~~~---~~~~-~~D~~ah~~EHSiEvQlPFLqy~f~~-~fKIVPi~m-~~q~~~~a~~ig~~i~k~i~e~ 181 (279)
T COG1355 108 KVDSELAEELVKH---SGII-DLDELAHLYEHSIEVQLPFLQYLFGD-EFKIVPICM-GMQDKEVARDIGRAIAKVIKEL 181 (279)
T ss_pred eeCHHHHHHHHHh---cCCC-CchhhhhhhhceEEeehHHHHHHccC-CcEEEeEEE-ecccHHHHHHHHHHHHHHHhhc
Confidence 5599999888765 4552 11223345568876543 445665 899999999 7788999999999999984 44
Q ss_pred -CeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580 208 -GVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR 250 (250)
Q Consensus 208 -rVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd 250 (250)
+++||+|=|++|.. +....+++|+.+.++|+++|
T Consensus 182 ~~~liIaSSDf~HYe---------p~~~~~~~D~~~I~~I~~~d 216 (279)
T COG1355 182 GDALIIASSDFTHYE---------PQDIVRRKDRILIKAILALD 216 (279)
T ss_pred CCeEEEEecCccccC---------chhhhhhhHHHHHHHHHhcC
Confidence 59999999999983 24568999999999999875
No 37
>PF01875 Memo: Memo-like protein; InterPro: IPR002737 This entry contains proteins from all branches of life. The molecular function of these proteins are unknown, but Memo (mediator of ErbB2-driven cell motility) a human protein is included in this family []. It has been suggested that Memo controls cell migration by relaying extracellular chemotactic signals to the microtubule cytoskeleton [].; PDB: 3BD0_C 3BCZ_C.
Probab=98.39 E-value=5.7e-07 Score=81.84 Aligned_cols=149 Identities=19% Similarity=0.246 Sum_probs=84.3
Q ss_pred hcCCCCEEEEEeC-CCCCCCCeEEecCCCCccCCCCCCCcccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcc
Q 025580 84 FSQRPNSILVISA-HWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDRKRGLD 162 (250)
Q Consensus 84 ~~~~PdaIVviS~-Hw~~~~~~I~~~~~~~~~~Df~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lD 162 (250)
...+||.||+++| |+. ....+.+... . +| .-|=. +.+.|.+++++|.+.... + ...+....-+
T Consensus 58 ~~~~~~~vvilGpsH~~-~~~~~~~~~~-~---~~-~TPlG------~v~vD~e~~~~L~~~~~~--~--~~~~~~h~~E 121 (276)
T PF01875_consen 58 KESKPKRVVILGPSHTG-YGDGIAVSPF-D---SW-ETPLG------EVPVDSELAEELAKNFPF--F--EFDDEAHEEE 121 (276)
T ss_dssp -TTT--EEEEEEE-SSS---SSEEE-SS-S---EE---SS--------EEB-HHHHHHHHHTT-E-----EE--HHHHH-
T ss_pred hhcCCCEEEEECCCccC-CCCCeEeccC-C---eE-ECCCc------ccccCHHHHHHHHhcCCC--c--ccchhhcccc
Confidence 3478999999997 554 3344444321 1 11 11222 455688888887765321 2 1122233568
Q ss_pred cchhhhhhh---hcCC-CCCCEEEeecCCCCCHHHHHHHHHHhccc-ccCCeEEEEecCCcccCcccccCCCCCChhHHH
Q 025580 163 HGAWVPLML---MYPE-ADIPVCQLSVQMHHTGTYHYNIGKALAPL-KEEGVLIIGSGSATHNLRALQFESSSISSWALE 237 (250)
Q Consensus 163 HG~~vPL~~---l~p~-~diPVV~vS~~~~~~~~~~~~LG~aL~~l-~derVlIIgSG~lSHnL~~~~~~~~~~~~~a~e 237 (250)
|..=|-|=| .+|+ .+++||||.+ ...+.+.+.++|++|.++ +|++++||+|-|+||.....+... ...+.+++
T Consensus 122 HSlEvqlPFLq~~~~~~~~~~IVPI~v-g~~~~~~~~~~a~~L~~~~~~~~~liV~SsD~sHyg~rfg~~~-~~~~~~~~ 199 (276)
T PF01875_consen 122 HSLEVQLPFLQYLFPDRRDFKIVPILV-GDQSPETAKELAEALAEYLKDEGTLIVASSDFSHYGPRFGDAP-KPEEIAEK 199 (276)
T ss_dssp -TTGGGHHHHHHHTGGGTS-EEEEEEE--S--HHHHHHHHHHHHHHHTSTTEEEEEE----EEBGGGT--G-GGSSHHHH
T ss_pred CcEEEHHHHHHHHhccCCceEEEEEEe-cCCCHHHHHHHHHHHHHHHcCCCEEEEEeCccccccccccCCC-CCHHHHHH
Confidence 988887655 4677 6799999998 667888899999999997 467899999999999986655211 12344444
Q ss_pred ---HHHHHHHHHHcCC
Q 025580 238 ---FDNWLKDALLEGR 250 (250)
Q Consensus 238 ---FD~~v~~~i~~Gd 250 (250)
.|+...+.|+++|
T Consensus 200 ~~~~D~~~i~~i~~~d 215 (276)
T PF01875_consen 200 IEALDREAIEAIEALD 215 (276)
T ss_dssp HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHccC
Confidence 4999999999876
No 38
>PRK09004 FMN-binding protein MioC; Provisional
Probab=78.39 E-value=12 Score=30.55 Aligned_cols=76 Identities=14% Similarity=0.044 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecC-CCCCHHHHHHHHHHhcc----cccCC
Q 025580 134 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQ-MHHTGTYHYNIGKALAP----LKEEG 208 (250)
Q Consensus 134 ~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~-~~~~~~~~~~LG~aL~~----l~der 208 (250)
..++|++|.+.+++.|++ +.... .+. +- -.++.+.=|+.+|.. .+..|.....|=+.|.+ +...+
T Consensus 15 ae~~A~~l~~~~~~~g~~-~~~~~---~~~----~~--~l~~~~~li~~~sT~G~Ge~p~~~~~f~~~L~~~~~~l~g~~ 84 (146)
T PRK09004 15 AEYVADHLAEKLEEAGFS-TETLH---GPL----LD--DLSASGLWLIVTSTHGAGDLPDNLQPFFEELQEQKPDLSQVR 84 (146)
T ss_pred HHHHHHHHHHHHHHcCCc-eEEec---cCC----HH--HhccCCeEEEEECCCCCCCCChhHHHHHHHHHhcCCCCCCCE
Confidence 567899999999999984 43211 111 11 123333323333332 11234555566665544 45678
Q ss_pred eEEEEecCCcc
Q 025580 209 VLIIGSGSATH 219 (250)
Q Consensus 209 VlIIgSG~lSH 219 (250)
++|+|.|+.+.
T Consensus 85 ~aVfGlGds~Y 95 (146)
T PRK09004 85 FAAIGIGSSEY 95 (146)
T ss_pred EEEEeecCCCH
Confidence 99999999874
No 39
>PRK03995 hypothetical protein; Provisional
Probab=75.74 E-value=20 Score=32.78 Aligned_cols=112 Identities=22% Similarity=0.264 Sum_probs=70.6
Q ss_pred CCCEEEEEeCCCC-CCCCeEEe--cCCCCccCCCCCCCcccccccCCCCCCHHHHHHHHHHHHhC----CCCcccccCCC
Q 025580 87 RPNSILVISAHWD-TDFPSVNV--VQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKAS----GIKHVNEDRKR 159 (250)
Q Consensus 87 ~PdaIVviS~Hw~-~~~~~I~~--~~~~~~~~Df~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~----Gid~~~~~~~~ 159 (250)
++|.||++|=|-- ...+.+++ ..++ .--+|+|-|.+ -++.+|.+...+.+.+++. +++ +...-
T Consensus 63 ~~d~iIflSRH~s~~~~p~LTvH~tGN~-~~a~~GG~p~~------la~a~P~~~~~lL~~l~~~~~~~~ye-vt~Ea-- 132 (267)
T PRK03995 63 KGEYIIFLSRHSSKAKKPSLTVHTPGNP-GEASYGGKPKE------LAIANPRLMTSLLRNLKKLAKELGFE-VTFEA-- 132 (267)
T ss_pred CCCEEEEEecccCCCCCceEEEECCCCC-chhhcCCCCCc------cccCCHHHHHHHHHHHHHhcCCCCcE-EEEEc--
Confidence 8999999999965 44455555 2233 23358888886 4677899888888877543 342 32221
Q ss_pred CcccchhhhhhhhcCCCCCCEEEeecCCCC----CHHHHHHHHHHhcccc-----cCCeEEEEecCC
Q 025580 160 GLDHGAWVPLMLMYPEADIPVCQLSVQMHH----TGTYHYNIGKALAPLK-----EEGVLIIGSGSA 217 (250)
Q Consensus 160 ~lDHG~~vPL~~l~p~~diPVV~vS~~~~~----~~~~~~~LG~aL~~l~-----derVlIIgSG~l 217 (250)
-.||-+ +.+.|.+=|-+-+.. +++.+-.+.+++-++. ++...+||-||.
T Consensus 133 -THHGPt--------~l~~Ps~FvEIGSte~eW~d~~a~~~vA~avl~~l~~~~~~~~~~~iGiGGg 190 (267)
T PRK03995 133 -THHGPT--------ELKVPSVFVEIGSTEEEWKNERAGEILAEAVIEVLDSIEYEKFKPAIGIGGG 190 (267)
T ss_pred -cccCCC--------CCCCCeEEEEeCCCHHHhCCcHHHHHHHHHHHHHHhcccccCCCEEEEECCC
Confidence 246642 468898877774443 3555566666655542 345577788875
No 40
>PRK05723 flavodoxin; Provisional
Probab=74.89 E-value=17 Score=30.12 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCC-CCHHHHHHHHHHhc-----ccccC
Q 025580 134 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMH-HTGTYHYNIGKALA-----PLKEE 207 (250)
Q Consensus 134 ~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~-~~~~~~~~LG~aL~-----~l~de 207 (250)
..++|++|.+.+.+.|++ +.......+ .-+.- + +.+.=|+.+|.... ..|.....|=+.|. .+.+.
T Consensus 14 ae~~A~~la~~l~~~g~~-~~~~~~~~~-----~~~~~-~-~~~~li~~~sT~G~Ge~Pd~~~~f~~~L~~~~~~~l~~~ 85 (151)
T PRK05723 14 AEEVARHAESLLKAAGFE-AWHNPRASL-----QDLQA-F-APEALLAVTSTTGMGELPDNLMPLYSAIRDQLPAAWRGL 85 (151)
T ss_pred HHHHHHHHHHHHHHCCCc-eeecCcCCH-----hHHHh-C-CCCeEEEEECCCCCCCCchhHHHHHHHHHhcCccCCCCC
Confidence 567899999999988984 432111111 01110 0 11222444554222 23444444444444 45668
Q ss_pred CeEEEEecCCcc
Q 025580 208 GVLIIGSGSATH 219 (250)
Q Consensus 208 rVlIIgSG~lSH 219 (250)
+++|+|.|+.++
T Consensus 86 ~~aVfGLGDs~Y 97 (151)
T PRK05723 86 PGAVIALGDSSY 97 (151)
T ss_pred EEEEEeEeCCcc
Confidence 999999999987
No 41
>TIGR02017 hutG_amidohyd N-formylglutamate amidohydrolase. In some species, histidine is converted to via urocanate and then formimino-L-glutamate to glutamate in four steps, where the fourth step is conversion of N-formimino-L-glutamate to L-glutamate and formamide. In others, that pathway from formimino-L-glutamate may differ, with the next enzyme being formiminoglutamate hydrolase (HutF) yielding N-formyl-L-glutamate. This model represents the enzyme N-formylglutamate deformylase, also called N-formylglutamate amidohydrolase, which then produces glutamate.
Probab=73.48 E-value=16 Score=33.15 Aligned_cols=100 Identities=17% Similarity=0.203 Sum_probs=62.1
Q ss_pred HHHHHHHHHhh--cCCCCEEEEEeCCCCCCC-CeEEecCCC-CccCCCCCCCcccccccCCCCCCHHHHHHHHHHHH-hC
Q 025580 74 GFLQAWQAKVF--SQRPNSILVISAHWDTDF-PSVNVVQRN-DTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLK-AS 148 (250)
Q Consensus 74 ~~l~~l~~~l~--~~~PdaIVviS~Hw~~~~-~~I~~~~~~-~~~~Df~gFp~~~y~~~y~~~G~~~LA~~i~~~l~-~~ 148 (250)
.+-+++.+.+. ..+....|+|+.|-.... +....+..+ =.++| .+...-+++|++.+.+.++ +.
T Consensus 122 PYH~al~~~L~~~~~~~g~~~liD~HSm~s~~p~~~~g~~pd~~lG~-----------~~G~s~~~~l~~~l~~~l~~~~ 190 (263)
T TIGR02017 122 PYHAALQAEIERLRAQHGYAVLYDAHSIRSVIPRLFEGKLPDFNIGT-----------NDGASCDPALTDAVEAVCAKAT 190 (263)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeccCCccCCCcCCCCCCCEEEeC-----------CCCCCCCHHHHHHHHHHHHhcC
Confidence 33445555443 346678899999944321 111101111 12222 2233449999999999996 67
Q ss_pred CCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCC
Q 025580 149 GIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMH 188 (250)
Q Consensus 149 Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~ 188 (250)
|+ .+..+..+ .|.++.-+|=.|+..+..|||-+|..
T Consensus 191 g~-~v~~N~Py---~Gg~itr~yg~p~~~vhaiQiEi~r~ 226 (263)
T TIGR02017 191 GY-SHVLNGRF---KGGWITRHYGQPQNGVHAVQMELAQR 226 (263)
T ss_pred Cc-eEEeCCCC---CCcceecccCCCCCCCceEeeeEchh
Confidence 88 45444333 67888888888999999999999843
No 42
>PF04414 tRNA_deacylase: D-aminoacyl-tRNA deacylase; InterPro: IPR007508 D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1YQE_A 2GFQ_B.
Probab=70.08 E-value=11 Score=33.36 Aligned_cols=113 Identities=24% Similarity=0.369 Sum_probs=58.2
Q ss_pred cCCCCEEEEEeCCCCCCC-CeEEec--CCCCccCCCCCCCcccccccCCCCCCHHHHHHHHHHHHh---CCCCcccccCC
Q 025580 85 SQRPNSILVISAHWDTDF-PSVNVV--QRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKA---SGIKHVNEDRK 158 (250)
Q Consensus 85 ~~~PdaIVviS~Hw~~~~-~~I~~~--~~~~~~~Df~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~---~Gid~~~~~~~ 158 (250)
..++|.||++|=|--..+ +.+++- .+... -+|+|-|.+ -++-+|.+...+.+.+.+ .|++ +...-+
T Consensus 10 ~~~~d~iIf~SrH~s~~~~p~LTvH~tGN~~~-a~~GG~p~~------la~a~P~~~~~~l~~l~~~~~e~y~-v~~EaT 81 (213)
T PF04414_consen 10 FEDPDLIIFLSRHSSESGRPSLTVHTTGNFGE-AEYGGKPGE------LAPANPRLMKALLRALKKHAPEGYE-VSYEAT 81 (213)
T ss_dssp TS--SEEEEEEEEE-TT---EEEEE--EESS---TTSS-TTE------E-BB-HHHHHHHHHHHHHHGGCT-E-EEE--S
T ss_pred cCCCCEEEEEeeccCCCCCceEEEeCCCCCCc-cccCCCCCc------cccCCHHHHHHHHHHHHHhccCCCE-EEEEee
Confidence 578999999999965554 555552 23333 678888876 356688888777777753 3663 443222
Q ss_pred CCcccchhhhhhhhcCC-CCCCEEEeecCCCC----CHHHHHHHHHHhccccc----C--CeEEEEecCC
Q 025580 159 RGLDHGAWVPLMLMYPE-ADIPVCQLSVQMHH----TGTYHYNIGKALAPLKE----E--GVLIIGSGSA 217 (250)
Q Consensus 159 ~~lDHG~~vPL~~l~p~-~diPVV~vS~~~~~----~~~~~~~LG~aL~~l~d----e--rVlIIgSG~l 217 (250)
.|| |. .++|.+=|-+-+.. +++..-.+.+++-++.+ . +..+||-||.
T Consensus 82 ---HHG---------Pt~~~~Ps~FvEIGSte~eW~d~~a~~~vA~avl~~~~~~~~~~~~~~~ig~GG~ 139 (213)
T PF04414_consen 82 ---HHG---------PTDLSVPSVFVEIGSTEEEWNDPDAAEAVARAVLEVLESDEKAECCPVAIGFGGG 139 (213)
T ss_dssp ----SS--------------SBEEEEEEEESHHHHT-HHHHHHHHHHHHHHHHHTTCSTT-EEEEEE-S-
T ss_pred ---ccC---------CCCCCCCcEEEEeCCCHHHhCChHHHHHHHHHHHHHhcccccccccceeEEecCc
Confidence 366 33 67887777663333 34555555555555421 2 2788888885
No 43
>PRK08105 flavodoxin; Provisional
Probab=67.37 E-value=31 Score=28.26 Aligned_cols=78 Identities=14% Similarity=0.019 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCC-CCHHHHHHHHHHhcc----cccCC
Q 025580 134 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMH-HTGTYHYNIGKALAP----LKEEG 208 (250)
Q Consensus 134 ~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~-~~~~~~~~LG~aL~~----l~der 208 (250)
..++|++|.+.+++.|++ +.... ++. .-++. .++.+.=|+.+|.-.. ..|.....+=+.|++ +.+.+
T Consensus 15 te~~A~~l~~~l~~~g~~-~~~~~---~~~--~~~~~--~~~~~~vi~~~sT~G~Ge~p~~~~~f~~~l~~~~~~l~~~~ 86 (149)
T PRK08105 15 ALLVAEEAEAILTAQGHE-VTLFE---DPE--LSDWQ--PYQDELVLVVTSTTGQGDLPDSIVPLFQALKDTAGYQPNLR 86 (149)
T ss_pred HHHHHHHHHHHHHhCCCc-eEEec---hhh--CCchh--cccCCeEEEEECCCCCCCCChhHHHHHHHHHhcCcccCCCE
Confidence 467899999999999984 43211 111 11110 1112222333333211 234444444444443 34578
Q ss_pred eEEEEecCCcc
Q 025580 209 VLIIGSGSATH 219 (250)
Q Consensus 209 VlIIgSG~lSH 219 (250)
++|+|.|+.++
T Consensus 87 ~avfGlGds~Y 97 (149)
T PRK08105 87 YGVIALGDSSY 97 (149)
T ss_pred EEEEeeecCCH
Confidence 99999999875
No 44
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=63.83 E-value=48 Score=29.11 Aligned_cols=81 Identities=15% Similarity=0.086 Sum_probs=46.0
Q ss_pred HHHHHHHHHhhcCCCCEEEEEeCCCCCCCCe---EEecCCCCccCCCCCCCcccccccCCCCCCHHH-----HHHHHHHH
Q 025580 74 GFLQAWQAKVFSQRPNSILVISAHWDTDFPS---VNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPEL-----AKRVKDLL 145 (250)
Q Consensus 74 ~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~---I~~~~~~~~~~Df~gFp~~~y~~~y~~~G~~~L-----A~~i~~~l 145 (250)
...+.+.+.+.+.+||+||.+.=+.-....+ ++++.....+-|-.|.-+..-.+ ...|...+ .+++.+.+
T Consensus 47 ~~~~~l~~~~~~~~Pd~vl~~G~a~~r~~i~lEr~AiN~~d~~~pDn~G~~p~~~~I--~~~gp~~~~t~lp~~~l~~~l 124 (209)
T PRK13193 47 KIEDLIVTKIREMKPILTLGIGVAPGRAKITPEKIAINYKYSREGDNAGKKYKGEKI--DPLGQDGIFTNIPVEDLVDLL 124 (209)
T ss_pred HHHHHHHHHHHHHCCCEEEEecccCCcCceEEEEEEEccCcCcCCccCCCCcCCCcc--cCCCcceeecCCCHHHHHHHH
Confidence 3444555556677999999998776555433 23333333455656652211111 11222222 57888899
Q ss_pred HhCCCCcccccC
Q 025580 146 KASGIKHVNEDR 157 (250)
Q Consensus 146 ~~~Gid~~~~~~ 157 (250)
+++|+ ++..+.
T Consensus 125 ~~~Gi-p~~~S~ 135 (209)
T PRK13193 125 NENGI-PAELSL 135 (209)
T ss_pred HhcCC-CceEec
Confidence 99999 565443
No 45
>PRK14866 hypothetical protein; Provisional
Probab=63.29 E-value=52 Score=32.44 Aligned_cols=113 Identities=20% Similarity=0.294 Sum_probs=68.2
Q ss_pred CCCEEEEEeCCCCC-CCCeEEecC-CCCccCCCCCCCcccccccCCCCCCHHHHHHHHHHHHh---CCCCcccccCCCCc
Q 025580 87 RPNSILVISAHWDT-DFPSVNVVQ-RNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKA---SGIKHVNEDRKRGL 161 (250)
Q Consensus 87 ~PdaIVviS~Hw~~-~~~~I~~~~-~~~~~~Df~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~---~Gid~~~~~~~~~l 161 (250)
+||.||++|=|--. ..+.+++-. .+-..-+|+|-|.+ -++-+|.+...+.+.+.+ .|++ +...- -
T Consensus 69 ~~d~iIf~SRH~s~~~~p~LTvH~tGN~~~a~~GG~p~~------la~a~P~~~~~lL~~l~~~~~~~ye-vt~Ea---T 138 (451)
T PRK14866 69 DPDLLIFASRHSSVDTGPLLTAHFTGNFGPAEYGGEPGS------LAPAAPNAMKAVLEALAEHAPEGYD-VSMEC---T 138 (451)
T ss_pred CCCEEEEEecccCCCCCceEEEECCCCCChhhcCCCCCc------cccCCHHHHHHHHHHHHHhCcCCcE-EEEEc---c
Confidence 89999999999653 445555522 11223458888876 456788888887776643 2453 33222 2
Q ss_pred ccchhhhhhhhcCCCCCCEEEeecCCCC----CHHHHHHHHHHhcccc----cCCeEEEEecCC
Q 025580 162 DHGAWVPLMLMYPEADIPVCQLSVQMHH----TGTYHYNIGKALAPLK----EEGVLIIGSGSA 217 (250)
Q Consensus 162 DHG~~vPL~~l~p~~diPVV~vS~~~~~----~~~~~~~LG~aL~~l~----derVlIIgSG~l 217 (250)
.||-+ +.++|.+=|-+-+.. +++.+-.+.+++-++. ++...+||-||.
T Consensus 139 HHGPt--------~l~~Ps~FvEIGSte~eW~d~~a~~~vA~ail~~~~~~~~~~~~~iG~GGg 194 (451)
T PRK14866 139 HHGPT--------DVGVPSLFVELGSTEKEWDDPDAARAVARAILDLRGVPPHTDRPLVGFGGG 194 (451)
T ss_pred ccCCC--------CCCCceEEEEeCCCHHHhCCcHHHHHHHHHHHHHhcccccCCCEEEEeCCC
Confidence 46643 357888877774433 3455555666555542 234577788885
No 46
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=60.54 E-value=46 Score=26.17 Aligned_cols=96 Identities=16% Similarity=0.220 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeec-CCCCCH----HHHHHHHHHh------c
Q 025580 134 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSV-QMHHTG----TYHYNIGKAL------A 202 (250)
Q Consensus 134 ~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~-~~~~~~----~~~~~LG~aL------~ 202 (250)
...+|++|.+.|++.|++ +..-.-...|.. +.-+ .+.+.=++-+|. +.+..| ....++-... .
T Consensus 10 te~~A~~ia~~l~~~g~~-~~~~~~~~~~~~----~~~~-~~~~~~i~~~sT~~~g~~p~~~~~~~~~~~~~~~~~~~~~ 83 (143)
T PF00258_consen 10 TEKMAEAIAEGLRERGVE-VRVVDLDDFDDS----PSDL-SEYDLLIFGVSTYGEGEPPDNAKEFFEELLELKGKELSKP 83 (143)
T ss_dssp HHHHHHHHHHHHHHTTSE-EEEEEGGGSCHH----HHHH-CTTSEEEEEEEEETTTEESGGGHHHHHHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHHHcCCc-eeeechhhhhhh----hhhh-hhhceeeEeecccCCCcchhhhhhhhhhcccccccccccc
Confidence 356899999999999984 443221222222 2222 122222333332 122212 1344555444 2
Q ss_pred ccccCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHH
Q 025580 203 PLKEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKD 244 (250)
Q Consensus 203 ~l~derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~ 244 (250)
.+...+++|+|+|+.+-. ++...++.+|+++.+
T Consensus 84 ~l~~~~~avfg~Gd~~~~---------~f~~~~k~l~~~l~~ 116 (143)
T PF00258_consen 84 DLKGKKYAVFGLGDSGYG---------GFCAAAKKLDERLEE 116 (143)
T ss_dssp HCTTCEEEEEEEEETTSS---------TTTHHHHHHHHHHHH
T ss_pred ccccceeeeeecCCccch---------hhhhHHHHHHHHHHH
Confidence 346688999999985321 134667888887765
No 47
>PRK06703 flavodoxin; Provisional
Probab=52.88 E-value=56 Score=26.28 Aligned_cols=75 Identities=19% Similarity=0.163 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCC---CCHHHHHHHHHHhc--ccccCC
Q 025580 134 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMH---HTGTYHYNIGKALA--PLKEEG 208 (250)
Q Consensus 134 ~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~---~~~~~~~~LG~aL~--~l~der 208 (250)
...+|+.|.+.+.+.|++ +....-...|... + + +...|.+..+.. ..|.....+=+.|. .+.+++
T Consensus 15 T~~iA~~ia~~l~~~g~~-v~~~~~~~~~~~~------l-~--~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~ 84 (151)
T PRK06703 15 TEDIADLIKVSLDAFDHE-VVLQEMDGMDAEE------L-L--AYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKK 84 (151)
T ss_pred HHHHHHHHHHHHHhcCCc-eEEEehhhCCHHH------H-h--cCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCE
Confidence 456889999999888884 4321111111111 1 2 233344333221 12444555544454 345688
Q ss_pred eEEEEecCCc
Q 025580 209 VLIIGSGSAT 218 (250)
Q Consensus 209 VlIIgSG~lS 218 (250)
++++|||+.+
T Consensus 85 ~~vfg~g~~~ 94 (151)
T PRK06703 85 VAVFGSGDTA 94 (151)
T ss_pred EEEEccCCCC
Confidence 9999999876
No 48
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=50.20 E-value=56 Score=30.59 Aligned_cols=90 Identities=18% Similarity=0.190 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEe--CCCCCC-----CCeEEecCCCCccCCCCCCC-------------------ccccc
Q 025580 73 RGFLQAWQAKVFSQRPNSILVIS--AHWDTD-----FPSVNVVQRNDTIHDFYGFP-------------------KQMYD 126 (250)
Q Consensus 73 ~~~l~~l~~~l~~~~PdaIVviS--~Hw~~~-----~~~I~~~~~~~~~~Df~gFp-------------------~~~y~ 126 (250)
.++.+++.+.+++..|+.+||.= ...... ...|..-..+.++++.++-. -..+-
T Consensus 190 ~~~i~~Ia~~ar~~~P~~~II~NnG~eil~~~~g~~~~~idgV~~Eslf~~~~~~~~e~dr~~~l~~L~~~~~~G~~Vl~ 269 (315)
T TIGR01370 190 IAFVCEIAAYARAQNPQFVIIPQNGEELLRDDHGGLAATVSGWAVEELFYYAANRPTEAERQRRLLALYRLWQQGKFVLT 269 (315)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecCchhhhhccccchhhhceEEEecceEEcCCCCCCHHHHHHHHHHHHHHHHCCCcEEE
Confidence 34566666666778899888752 222211 12222211233444332211 11456
Q ss_pred ccCCCCC-----CHHHHHHHHHHHHhCCCCcccccCCCCcc
Q 025580 127 LKYPAPG-----APELAKRVKDLLKASGIKHVNEDRKRGLD 162 (250)
Q Consensus 127 ~~y~~~G-----~~~LA~~i~~~l~~~Gid~~~~~~~~~lD 162 (250)
+.|-.+| +.++++.+.+.+++.||-+-..+..+.+|
T Consensus 270 IDY~~~~~~~~~n~~~~~~~~~~~~~~Gf~pYVsd~~l~l~ 310 (315)
T TIGR01370 270 VDYVDDGTKTNENPARMKDAAEKARAAGLIPYVAESDLELD 310 (315)
T ss_pred EEecCCcccchhhHHHHHHHHHHHHHcCCeeeecCchhccc
Confidence 7888888 56889999999999998432233344443
No 49
>PF05013 FGase: N-formylglutamate amidohydrolase; InterPro: IPR007709 Formylglutamate amidohydrolase (FGase) catalyzes the terminal reaction in the five-step pathway for histidine utilization in Pseudomonas putida. By this action, N-formyl-L-glutamate (FG) is hydrolyzed to produce L-glutamate plus formate [].; PDB: 2ODF_G 2Q7S_A.
Probab=50.10 E-value=30 Score=30.14 Aligned_cols=99 Identities=14% Similarity=0.224 Sum_probs=56.0
Q ss_pred HHHHHHHHHhh--cCCCCEEEEEeCCCCCCCC-eEEecC-CCCccCCCCCCCcccccccCCCCCCHHHHHHHHHHHH-hC
Q 025580 74 GFLQAWQAKVF--SQRPNSILVISAHWDTDFP-SVNVVQ-RNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLK-AS 148 (250)
Q Consensus 74 ~~l~~l~~~l~--~~~PdaIVviS~Hw~~~~~-~I~~~~-~~~~~~Df~gFp~~~y~~~y~~~G~~~LA~~i~~~l~-~~ 148 (250)
++-+++.+.+. +.+...+|+++.|-++... ...... .+=-+++- +...-++++.+.+.+.++ +.
T Consensus 114 Pyh~~l~~~l~~~~~~~g~~illd~HS~~~~~~~~~~~~~~~~~lG~~-----------~~~s~~~~l~~~~~~~l~~~~ 182 (222)
T PF05013_consen 114 PYHRALAALLERLRARFGKVILLDCHSMPPVPPGREDDPRPDIVLGTL-----------HGPSCDPELVDALAEALEASD 182 (222)
T ss_dssp HHHHHHHHHHHHHHHCCS-EEEEEEEEE-TCCCCCCT----SECEECC-----------TTTSS-HHHHHHHHHHCC-CT
T ss_pred HHHHHHHHHHHHHHHhcCceEEEEeccCCCcccccccCCCCCeEEEcC-----------CCCCCCHHHHHHHHHHhhccc
Confidence 34444444443 4567889999999655421 110000 00012221 121227899999999999 77
Q ss_pred CCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCC
Q 025580 149 GIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQM 187 (250)
Q Consensus 149 Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~ 187 (250)
|+ .+..+..+ .|..++-++=.|...++.|||-++.
T Consensus 183 g~-~v~~N~Py---~Gg~~~~~~~~~~~~v~~iqiEi~~ 217 (222)
T PF05013_consen 183 GY-SVRVNEPY---SGGYITRYYGRPARGVHAIQIEINR 217 (222)
T ss_dssp TS--EEETSS-----GGHCCCHHHCCCCTEEEEEEEEEG
T ss_pred Cc-EEeeCCCC---CCcchhcEEecCCCCceEEEEEEEH
Confidence 88 46655544 4566666677788999999998864
No 50
>PRK09271 flavodoxin; Provisional
Probab=50.06 E-value=92 Score=25.53 Aligned_cols=80 Identities=16% Similarity=0.176 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCC---CCCHHHHHHHHHHhccc--ccCC
Q 025580 134 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQM---HHTGTYHYNIGKALAPL--KEEG 208 (250)
Q Consensus 134 ~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~---~~~~~~~~~LG~aL~~l--~der 208 (250)
...+|++|++.+++.|++ +... +....+ ..+. ...-.+.-+|-+..+. +..|.....|=+.|... ..++
T Consensus 14 Te~~A~~ia~~l~~~g~~-v~~~-~~~~~~--~~~~--~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~~~~~k~ 87 (160)
T PRK09271 14 TREVAREIEERCEEAGHE-VDWV-ETDVQT--LAEY--PLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAETIGKPPN 87 (160)
T ss_pred HHHHHHHHHHHHHhCCCe-eEEE-eccccc--cccc--ccCcccCCEEEEECcccCCCcCCHHHHHHHHHHHHHhccCCe
Confidence 356899999999999984 4321 111111 0010 0011234555555432 23344455555555443 3577
Q ss_pred eEEEEecCCcc
Q 025580 209 VLIIGSGSATH 219 (250)
Q Consensus 209 VlIIgSG~lSH 219 (250)
++++|||+.++
T Consensus 88 ~avfgsgd~~~ 98 (160)
T PRK09271 88 VAVFGTGETQW 98 (160)
T ss_pred EEEEecCCCCc
Confidence 99999996554
No 51
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=48.56 E-value=62 Score=32.75 Aligned_cols=78 Identities=22% Similarity=0.247 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCC-CCHHHHHHHHHHhcc-----cccC
Q 025580 134 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMH-HTGTYHYNIGKALAP-----LKEE 207 (250)
Q Consensus 134 ~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~-~~~~~~~~LG~aL~~-----l~de 207 (250)
...+|++|.+.+++.|++ +... .+|. +-+ . -.+..+.=++.+|.... ..|.....|=+.|.+ +.+.
T Consensus 72 ae~~A~~l~~~l~~~g~~-~~v~---~~~d--~~~-~-~l~~~~~li~v~ST~GeGe~Pdna~~F~~~L~~~~~~~L~~~ 143 (597)
T TIGR01931 72 ARRLAKRLAEKLEAAGFS-VRLS---SADD--YKF-K-QLKKERLLLLVISTQGEGEPPEEAISFHKFLHSKKAPKLENL 143 (597)
T ss_pred HHHHHHHHHHHHHhCCCc-cEEe---chHH--CCH-h-hcccCceEEEEeCCCCCCcCCHHHHHHHHHHHhCCCcccCCC
Confidence 456899999999999984 4321 1111 000 0 01222222333444222 235666666666643 4567
Q ss_pred CeEEEEecCCcc
Q 025580 208 GVLIIGSGSATH 219 (250)
Q Consensus 208 rVlIIgSG~lSH 219 (250)
+++|+|.|+.++
T Consensus 144 ~~aVfGLGDssY 155 (597)
T TIGR01931 144 RYSVLGLGDSSY 155 (597)
T ss_pred eEEEEeCCcCCH
Confidence 899999999985
No 52
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=46.45 E-value=29 Score=29.10 Aligned_cols=100 Identities=23% Similarity=0.284 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHH-HhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCCCHHHHHHHHHHhccccc--CCe
Q 025580 133 GAPELAKRVKDLL-KASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKE--EGV 209 (250)
Q Consensus 133 G~~~LA~~i~~~l-~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~~~~~~~~LG~aL~~l~d--erV 209 (250)
++-+=+-.+++.+ .+.|.| +-. +| |.. -.++....++|||.+-+. .+++-++|.+++. ++|
T Consensus 17 ~~~e~~v~~a~~~~~~~g~d-ViI--sR----G~t--a~~lr~~~~iPVV~I~~s-------~~Dil~al~~a~~~~~~I 80 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGAD-VII--SR----GGT--AELLRKHVSIPVVEIPIS-------GFDILRALAKAKKYGPKI 80 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-S-EEE--EE----HHH--HHHHHCC-SS-EEEE----------HHHHHHHHHHCCCCTSEE
T ss_pred ecHHHHHHHHHHhhHhcCCe-EEE--EC----CHH--HHHHHHhCCCCEEEECCC-------HhHHHHHHHHHHhcCCcE
Confidence 3444555566666 677885 332 23 221 233555568999999874 5899999999864 789
Q ss_pred EEEEecCCcccCccccc--C----CCCCChhHHHHHHHHHHHHHcC
Q 025580 210 LIIGSGSATHNLRALQF--E----SSSISSWALEFDNWLKDALLEG 249 (250)
Q Consensus 210 lIIgSG~lSHnL~~~~~--~----~~~~~~~a~eFD~~v~~~i~~G 249 (250)
++|+......++..... + ...+ .-..+....+.++...|
T Consensus 81 avv~~~~~~~~~~~~~~ll~~~i~~~~~-~~~~e~~~~i~~~~~~G 125 (176)
T PF06506_consen 81 AVVGYPNIIPGLESIEELLGVDIKIYPY-DSEEEIEAAIKQAKAEG 125 (176)
T ss_dssp EEEEESS-SCCHHHHHHHHT-EEEEEEE-SSHHHHHHHHHHHHHTT
T ss_pred EEEecccccHHHHHHHHHhCCceEEEEE-CCHHHHHHHHHHHHHcC
Confidence 99999998876544332 0 0111 12346667777766655
No 53
>PRK10991 fucI L-fucose isomerase; Provisional
Probab=45.66 E-value=41 Score=34.19 Aligned_cols=111 Identities=23% Similarity=0.277 Sum_probs=62.8
Q ss_pred HHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecCC-CCccCCCCCCCcccccccCCCCCCHHHHHHHHHHHHhCCCCccc
Q 025580 76 LQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQR-NDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVN 154 (250)
Q Consensus 76 l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~~~-~~~~~Df~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~ 154 (250)
.++..+++++.++|++|.++++|.....++..... |.++ .||++. +.||...|+..+. .+.+.|+ +..
T Consensus 66 A~~~aekFk~e~Vd~~I~vt~cw~fG~Et~d~~~~~Pvll---Wg~~dp------erPGav~L~A~la-a~~Q~Gi-p~~ 134 (588)
T PRK10991 66 AAACEEKFSSENVGLTITVTPCWCYGSETIDMDPTRPKAI---WGFNGT------ERPGAVYLAAALA-AHSQKGI-PAF 134 (588)
T ss_pred HHHHHHHHhhcCCCEEEEecCcccchhHHHhcCCCCCEEE---eCCCCC------CCCcHHHHHHHHH-HHHhcCC-CeE
Confidence 34455666678999999999999765444322221 3333 355542 3477777874433 4445666 321
Q ss_pred ccCCCCcccchhhhhhhhcC----CCCCCEEEeecCCCCCHHHHHHHHHHhcccccCCeEEEEec
Q 025580 155 EDRKRGLDHGAWVPLMLMYP----EADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSG 215 (250)
Q Consensus 155 ~~~~~~lDHG~~vPL~~l~p----~~diPVV~vS~~~~~~~~~~~~LG~aL~~l~derVlIIgSG 215 (250)
+++. +.+=+-+|-.+ .-...+..+-+.+++.++.++++.||+=
T Consensus 135 ----------------~IyGh~vqd~dd~~i~~dv--~ekLl~FaRAa~aV~~LRg~syl~IG~r 181 (588)
T PRK10991 135 ----------------SIYGHDVQDADDTSIPADV--EEKLLRFARAGLAVASMKGKSYLSIGGV 181 (588)
T ss_pred ----------------EEeCCCccccccccchHHH--HHHHHHHHHHHHHHHHhcCCeEEEECCc
Confidence 1221 11111111000 1123567778888999999999999974
No 54
>TIGR01089 fucI L-fucose isomerase. This enzyme catalyzes the first step in fucose metabolism, and has been characterized in Escherichia coli and Bacteroides thetaiotaomicron.
Probab=42.97 E-value=86 Score=31.88 Aligned_cols=114 Identities=20% Similarity=0.237 Sum_probs=63.4
Q ss_pred HHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecCC-CCccCCCCCCCcccccccCCCCCCHHHHHHHHHHHHhCCCCccc
Q 025580 76 LQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQR-NDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVN 154 (250)
Q Consensus 76 l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~~~-~~~~~Df~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~ 154 (250)
.++..+++++..+|.+|.++|+|.....++..... |..+ .||+.. +.||..-||..+..+. +.|+ +..
T Consensus 65 A~a~a~kfk~~~Vd~tItvtpcWcygseT~dm~p~~P~al---Wgfn~p------erpGaVyLaA~lAaha-Q~Gl-p~f 133 (587)
T TIGR01089 65 AAACAEKFSRENVGLTITVTPCWCYGSETIDMDPHRPKAI---WGFNGT------ERPGAVYLAAALAGHS-QKGL-PAF 133 (587)
T ss_pred HHHHHHHHhhcCCCEEEEecceecCcHhhhhcCCCCCEEE---EcCCCC------CCCchHHHHHhhhHHh-hCCC-Cee
Confidence 33445666778999999999999876544433222 3333 356553 4489999987776555 4666 221
Q ss_pred ccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCCCHHHHHHHHHHhcccccCCeEEEEe
Q 025580 155 EDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGS 214 (250)
Q Consensus 155 ~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~~~~~~~~LG~aL~~l~derVlIIgS 214 (250)
.- ||.=| .+.+=+-+|--+ .....++.+-+.+.+.++.++++.|||
T Consensus 134 --~I----yG~~v------qd~~d~~ip~dV--~eKll~faRAa~AV~~Lkgksyl~IG~ 179 (587)
T TIGR01089 134 --SI----YGHDV------QDADDTSIPEDV--EEKLLRFARAGLAVASMRGKSYLSLGS 179 (587)
T ss_pred --EE----eCCCc------cccccccCcHHH--HHHHHHHHHHHHHHHHhccCeEEEECC
Confidence 11 11100 011101011000 001235556666788889999999987
No 55
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=42.03 E-value=2.2e+02 Score=24.21 Aligned_cols=109 Identities=13% Similarity=0.107 Sum_probs=60.2
Q ss_pred HHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeE---EecCCCCccCCCCCCCccccccc------CCCCCCHHHHHHHHHH
Q 025580 74 GFLQAWQAKVFSQRPNSILVISAHWDTDFPSV---NVVQRNDTIHDFYGFPKQMYDLK------YPAPGAPELAKRVKDL 144 (250)
Q Consensus 74 ~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I---~~~~~~~~~~Df~gFp~~~y~~~------y~~~G~~~LA~~i~~~ 144 (250)
...+.+.+.+.+.+||+||.++-|--.....+ ..+......-|-.|+.+.--.+. |...-+ .+++.+.
T Consensus 47 ~~~~~~~~~~~~~~pd~vlhlG~~~~~~~i~lE~~A~n~~~~~~pD~~G~~p~~~~i~~~g~~~~~t~lp---~~~l~~~ 123 (194)
T cd00501 47 KAVEVLPELIEEHKPDLVIHVGLAGGRSTITIERVAINIDDARIPDNEGNQPIDEPIVPGGPAAYFSTLP---VKAIVKA 123 (194)
T ss_pred HHHHHHHHHHHHhCCCEEEEecccCCCCceeEEeEEEccCCCCCCCCCCCcCCCCcccCCCCCeeeecCC---HHHHHHH
Confidence 44555555556779999999998876655443 22222223346556522111110 111111 5778888
Q ss_pred HHhCCCCcccccCCCC---cccchhhhhhhhcCC-CCCCEEEeecC
Q 025580 145 LKASGIKHVNEDRKRG---LDHGAWVPLMLMYPE-ADIPVCQLSVQ 186 (250)
Q Consensus 145 l~~~Gid~~~~~~~~~---lDHG~~vPL~~l~p~-~diPVV~vS~~ 186 (250)
++++|+ ++..+.+-| =+|-.+--|+..... .++|+..|.++
T Consensus 124 l~~~g~-~~~~S~dAG~YlCn~~~Y~sL~~~~~~~~~~~a~FvHvP 168 (194)
T cd00501 124 LREAGI-PARVSNDAGTYLCNHVYYGSLHESATRGPFIRAGFIHVP 168 (194)
T ss_pred HHhcCC-CceEcCCCCceeeHHHHHHHHHHHhccCCCceeceeecC
Confidence 999999 465544322 255555556554332 34777777775
No 56
>KOG3086 consensus Predicted dioxygenase [General function prediction only]
Probab=40.94 E-value=1.2e+02 Score=27.76 Aligned_cols=146 Identities=14% Similarity=0.125 Sum_probs=84.5
Q ss_pred CCCCEEEEEeC-CCCC-CCCeEEecCCCCccCCCCCCCcccccccCCCCCCHHHHHHHHHHHHhCC-CCcccccCCCCcc
Q 025580 86 QRPNSILVISA-HWDT-DFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASG-IKHVNEDRKRGLD 162 (250)
Q Consensus 86 ~~PdaIVviS~-Hw~~-~~~~I~~~~~~~~~~Df~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~G-id~~~~~~~~~lD 162 (250)
...+-|.++.| |+.. .+..++.....+ -| + ++.+.|.++-++| .+.| |+.+..+ .-.-.
T Consensus 67 s~v~RIFILGPSHHv~l~~CalS~~s~yr-------TP--L----gdLkVD~~i~~eL----~~tg~F~~Mdl~-tde~E 128 (296)
T KOG3086|consen 67 SNVQRIFILGPSHHVYLSKCALSSASIYR-------TP--L----GDLKVDQKICKEL----WATGMFERMDLD-TDEAE 128 (296)
T ss_pred hHeeEEEEecCcceeeecchhhhhhhhhc-------Cc--c----ccccccHHHHHHH----HHcCCccccccc-cccch
Confidence 45667788877 5443 334443322111 12 2 2445576655544 4444 4321111 11123
Q ss_pred cchhhhhhhh----cCC-CCCCEEEeecCCCCCHHHHHHHHHHhccc-ccCCeEEEEecCCcccCcccccCC-----CCC
Q 025580 163 HGAWVPLMLM----YPE-ADIPVCQLSVQMHHTGTYHYNIGKALAPL-KEEGVLIIGSGSATHNLRALQFES-----SSI 231 (250)
Q Consensus 163 HG~~vPL~~l----~p~-~diPVV~vS~~~~~~~~~~~~LG~aL~~l-~derVlIIgSG~lSHnL~~~~~~~-----~~~ 231 (250)
|..-+=|-++ -+. -.+.||||-+ ..+++..--..|+.|++. .|.+=+++-|-+.-||=+...-.. .+.
T Consensus 129 HSiEM~lP~lak~l~~~~~~~kivPilv-g~ls~~~e~~~g~lls~Yi~Dp~NlFvvSSDFCHWG~RF~yt~Yd~s~~~I 207 (296)
T KOG3086|consen 129 HSIEMQLPYLAKVLESRKDTVKIVPILV-GALSPSVEQCYGKLLSKYIKDPSNLFVVSSDFCHWGRRFSYTYYDHSQGPI 207 (296)
T ss_pred hhhhhhhHHHHHHHhhcCceEEEEeeEe-cccChHHHHHHHHHHHHHhcCccceEEEeccccccccccccccccCCCchH
Confidence 6555444333 222 2488999999 788998888999999996 577778888889999876654211 111
Q ss_pred ChhHHHHHHHHHHHHHcCC
Q 025580 232 SSWALEFDNWLKDALLEGR 250 (250)
Q Consensus 232 ~~~a~eFD~~v~~~i~~Gd 250 (250)
..--+..|+.=++.|+.+|
T Consensus 208 ~~sIe~lDk~gM~iiet~~ 226 (296)
T KOG3086|consen 208 YESIENLDKQGMKIIETLD 226 (296)
T ss_pred HHHHHHHHHhhhhhhhcCC
Confidence 2334567787788887654
No 57
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=40.35 E-value=28 Score=30.15 Aligned_cols=86 Identities=15% Similarity=0.162 Sum_probs=43.0
Q ss_pred cccceeeecccchhHHHHHhh--c---ceEeEEEeecCCCCCCCcCcCCccccceEEEEcCCCCCCCCCCChhHHHHHHH
Q 025580 4 QRIPVIAAKAGNFFLFFFLIN--S---VTLFIFIHYSANPSNATRGQQSRLSVMDTFFISHGSPTLSIDESLPARGFLQA 78 (250)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fisHGsP~l~~~~~~~~~~~l~~ 78 (250)
.||=|++...|..|.+++=+- . ..+...| |..+... ....+...-+|++-+++.. +. ....+ =++
T Consensus 2 ~ki~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vv--s~~~~~~-~~~~a~~~gIp~~~~~~~~--~~--~~~~~---~~~ 71 (200)
T PRK05647 2 KRIVVLASGNGSNLQAIIDACAAGQLPAEIVAVI--SDRPDAY-GLERAEAAGIPTFVLDHKD--FP--SREAF---DAA 71 (200)
T ss_pred ceEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEE--ecCccch-HHHHHHHcCCCEEEECccc--cC--chhHh---HHH
Confidence 358899998888887775442 2 2222222 2222211 1112222246777666622 11 10111 123
Q ss_pred HHHHhhcCCCCEEEEEeCCCC
Q 025580 79 WQAKVFSQRPNSILVISAHWD 99 (250)
Q Consensus 79 l~~~l~~~~PdaIVviS~Hw~ 99 (250)
+.+.+++.+||.||+++=+|.
T Consensus 72 ~~~~l~~~~~D~iv~~~~~~i 92 (200)
T PRK05647 72 LVEALDAYQPDLVVLAGFMRI 92 (200)
T ss_pred HHHHHHHhCcCEEEhHHhhhh
Confidence 445566679999988765443
No 58
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=40.20 E-value=1.2e+02 Score=23.69 Aligned_cols=14 Identities=29% Similarity=0.470 Sum_probs=9.3
Q ss_pred HHHHHHHHHhCCCC
Q 025580 138 AKRVKDLLKASGIK 151 (250)
Q Consensus 138 A~~i~~~l~~~Gid 151 (250)
...+.+.++++|+.
T Consensus 101 vv~v~d~~~~aG~~ 114 (122)
T TIGR02803 101 LMKVMNLLRQAGYL 114 (122)
T ss_pred HHHHHHHHHHcCCC
Confidence 45567777777773
No 59
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=39.96 E-value=1.1e+02 Score=31.12 Aligned_cols=78 Identities=18% Similarity=0.189 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCC-CCHHHHHHHHHHhc-----ccccC
Q 025580 134 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMH-HTGTYHYNIGKALA-----PLKEE 207 (250)
Q Consensus 134 ~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~-~~~~~~~~LG~aL~-----~l~de 207 (250)
..++|++|.+.+++.|++ +.... +| -.-+ .-+ ++.+.=|+.+|.... ..|.....|=+.|. .+.+.
T Consensus 75 ae~lA~~la~~l~~~g~~-~~v~~---~~--d~~~-~~L-~~~~~vl~v~ST~G~Ge~Pdna~~F~~~L~~~~~~~L~~~ 146 (600)
T PRK10953 75 ARRVAEQLRDDLLAAKLN-VNLVN---AG--DYKF-KQI-AQEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENT 146 (600)
T ss_pred HHHHHHHHHHHHHhCCCC-cEEec---hH--hCCH-hHh-ccCCeEEEEECCCCCCCCChhHHHHHHHHhhCcCcCCCCC
Confidence 566999999999999994 43211 11 1001 001 222332444554322 23555555555553 34567
Q ss_pred CeEEEEecCCcc
Q 025580 208 GVLIIGSGSATH 219 (250)
Q Consensus 208 rVlIIgSG~lSH 219 (250)
+.+|+|.|+.|.
T Consensus 147 ~faVfGLGDssY 158 (600)
T PRK10953 147 AFAVFGLGDTSY 158 (600)
T ss_pred EEEEEccCccCH
Confidence 899999999984
No 60
>COG4558 ChuT ABC-type hemin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=39.81 E-value=49 Score=30.78 Aligned_cols=16 Identities=19% Similarity=0.499 Sum_probs=12.7
Q ss_pred HHhhcCCCCEEEEEeC
Q 025580 81 AKVFSQRPNSILVISA 96 (250)
Q Consensus 81 ~~l~~~~PdaIVviS~ 96 (250)
+.+.+.+||+|||.|-
T Consensus 226 EAliaa~PDvivm~~r 241 (300)
T COG4558 226 EALIAANPDVIVMMSR 241 (300)
T ss_pred HHHhhcCCCEEEEecC
Confidence 4555889999999974
No 61
>cd03556 L-fucose_isomerase L-fucose isomerase (FucIase); FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose during glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in blood group determinants as well as in various oligo- and polysaccharides, and glycosides in mammals, bacteria and plants.
Probab=38.55 E-value=52 Score=33.35 Aligned_cols=114 Identities=22% Similarity=0.250 Sum_probs=63.7
Q ss_pred HHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecC-CCCccCCCCCCCcccccccCCCCCCHHHHHHHHHHHHhCCCCccc
Q 025580 76 LQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQ-RNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVN 154 (250)
Q Consensus 76 l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~~-~~~~~~Df~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~ 154 (250)
.++..+++++..+|++|.++|+|.....++.... .|..+ .||+.. +.||..-|+..+..+. +.|+ +..
T Consensus 62 A~~~a~kf~~~~Vd~tI~vtpcWcygset~dm~~~~P~al---Wgfn~p------erpGaVyLaA~lAaha-Q~Gl-p~f 130 (584)
T cd03556 62 AAACAEKFTRENVGATITVTPCWCYGSETMDMDPNTPKAI---WGFNGT------ERPGAVYLAAVLAGHA-QKGI-PAF 130 (584)
T ss_pred HHHHHHHHhhcCCCEEEEecceecCcHHHHhhcccCCEEE---EcCCCC------CCCchHHHHhhhhHHh-hCCC-Cce
Confidence 3444566677899999999999987644432221 23333 355543 4489999998666554 5666 221
Q ss_pred ccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCCCHHHHHHHHHHhcccccCCeEEEEe
Q 025580 155 EDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGS 214 (250)
Q Consensus 155 ~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~~~~~~~~LG~aL~~l~derVlIIgS 214 (250)
.-+|-| + .+.+=+-+|-.+ .....++.+-+.+.+.++.++++.||+
T Consensus 131 --~IyG~~--v--------qd~~d~~iP~DV--~eKll~faRAa~AV~~Lkgksyl~IG~ 176 (584)
T cd03556 131 --GIYGHD--V--------QEADDTTIPEDV--KEKILRFARAAIAVASMRGKSYLSIGS 176 (584)
T ss_pred --EEecCC--c--------cccccccCcHHH--HHHHHHHHHHHHHHHHhcCCeEEEECC
Confidence 111110 0 111111111111 011245556666788889999999987
No 62
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=36.67 E-value=2.3e+02 Score=24.87 Aligned_cols=81 Identities=15% Similarity=0.083 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeE---EecCCCCccCCCCCCCcccccccCCCCCCHH----H-HHHHHHHH
Q 025580 74 GFLQAWQAKVFSQRPNSILVISAHWDTDFPSV---NVVQRNDTIHDFYGFPKQMYDLKYPAPGAPE----L-AKRVKDLL 145 (250)
Q Consensus 74 ~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I---~~~~~~~~~~Df~gFp~~~y~~~y~~~G~~~----L-A~~i~~~l 145 (250)
...+.+.+.+.+.+||+||.+.=|.-.....+ +.+...-.+-|-.|.-+..-.+. ..|... | .+++.+.+
T Consensus 47 ~~~~~l~~~l~~~~Pd~vlhlG~a~~r~~i~lEr~A~N~~~~~~pD~~G~~p~~~~i~--~~gp~~y~ttlp~~~l~~~l 124 (208)
T PRK13194 47 RAREELEKVLDEIKPDITINLGLAPGRTHISVERVAVNAIDARIPDNDGEKPEDEPIV--EGAPAAYFATLPTREIVEEL 124 (208)
T ss_pred hHHHHHHHHHHHhCCCEEEEeeccCCcceEEEEEEEEcCCCCCCCCCCCCCCCCCccc--CCCCCcccCCCCHHHHHHHH
Confidence 34445555555679999999988866554433 33322223556556521110110 011100 1 47788888
Q ss_pred HhCCCCcccccC
Q 025580 146 KASGIKHVNEDR 157 (250)
Q Consensus 146 ~~~Gid~~~~~~ 157 (250)
+++|+ ++..+.
T Consensus 125 ~~~gi-p~~~S~ 135 (208)
T PRK13194 125 KKNGI-PAVLSY 135 (208)
T ss_pred HhcCC-CcEEeC
Confidence 99999 465443
No 63
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=36.40 E-value=1.3e+02 Score=27.57 Aligned_cols=80 Identities=19% Similarity=0.164 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCCCH----HHHHHHHHHhcc----
Q 025580 132 PGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTG----TYHYNIGKALAP---- 203 (250)
Q Consensus 132 ~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~~~----~~~~~LG~aL~~---- 203 (250)
+-.|.+..+|.+.|.+.|++ +....... + ...+++.| .+.+.++...+. ++..++++.|.-
T Consensus 15 ~DrpGIVa~VT~~La~~~vN-I~dls~~~-~--~~~~~F~m-------~~~~~~p~~~~~~~L~~~L~~l~~~l~l~i~i 83 (286)
T PRK13011 15 PSAAGIVAAVTGFLAEHGCY-ITELHSFD-D--RLSGRFFM-------RVEFHSEEGLDEDALRAGFAPIAARFGMQWEL 83 (286)
T ss_pred CCCCCHHHHHHHHHHhCCCC-EEEeeeee-c--CCCCeEEE-------EEEEecCCCCCHHHHHHHHHHHHHHhCcEEEE
Confidence 34566899999999999985 54322210 0 13334444 344555444442 344566665541
Q ss_pred ---cccCCeEEEEecCCcccCcc
Q 025580 204 ---LKEEGVLIIGSGSATHNLRA 223 (250)
Q Consensus 204 ---l~derVlIIgSG~lSHnL~~ 223 (250)
.+..||+|++||. .|||..
T Consensus 84 ~~~~~~~ri~vl~Sg~-g~nl~a 105 (286)
T PRK13011 84 HDPAARPKVLIMVSKF-DHCLND 105 (286)
T ss_pred eecccCceEEEEEcCC-cccHHH
Confidence 1347899999995 667643
No 64
>TIGR00504 pyro_pdase pyroglutamyl-peptidase I. Alternate names include pyroglutamate aminopeptidase, pyrrolidone-carboxylate peptidase, and 5-oxoprolyl-peptidase. It removes pyroglutamate (pyrrolidone-carboxylate, a modified glutamine) that can otherwise block hydrolysis of a polypeptide at the amino end, and so can be extremely useful in the biochemical studies of proteins. The biological role in the various species in which it is found is not fully understood. The enzyme appears to be a homodimer. It does not closely resemble any other peptidases.
Probab=35.00 E-value=2.5e+02 Score=24.57 Aligned_cols=111 Identities=14% Similarity=0.114 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeE---EecCCCCccCCCCCCCcccccc------cCCCCCCHHHHHHHH
Q 025580 72 ARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSV---NVVQRNDTIHDFYGFPKQMYDL------KYPAPGAPELAKRVK 142 (250)
Q Consensus 72 ~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I---~~~~~~~~~~Df~gFp~~~y~~------~y~~~G~~~LA~~i~ 142 (250)
+....+.+.+.+.+.+||+||.++=+.-....++ ..+...-.+-|-.|.-+..-.+ .|...=+ .+++.
T Consensus 43 ~~~~~~~l~~~l~~~~Pd~vi~~G~a~g~~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~~gp~~~~ttLp---v~~l~ 119 (212)
T TIGR00504 43 FFEAIEALQQAIDEIEPDIVIMLGLAPGRSMITVERVAINVNDARIPDNAGEQPIDEPIVPDGPAAYFATLP---VRAMV 119 (212)
T ss_pred hHHHHHHHHHHHHHHCCCEEEEeccCCCcCceeeEEeEeccCcCCCCCCCCCccCCCcccCCCCceeecCCC---HHHHH
Confidence 4455666667677789999999987765543332 2222222244555541110000 0111111 46788
Q ss_pred HHHHhCCCCcccccCCCC---cccchhhhhhhhcCC-CCCCEEEeecC
Q 025580 143 DLLKASGIKHVNEDRKRG---LDHGAWVPLMLMYPE-ADIPVCQLSVQ 186 (250)
Q Consensus 143 ~~l~~~Gid~~~~~~~~~---lDHG~~vPL~~l~p~-~diPVV~vS~~ 186 (250)
+.++++|+ ++..+.+-| =.|=.+--|++.... .++|.+=|.++
T Consensus 120 ~~l~~~gi-p~~~S~dAG~ylCN~i~Y~sL~~~~~~~~~~~agFIHVP 166 (212)
T TIGR00504 120 LAMKKAGI-PADVSYTAGTFVCNHLMYGLLHHLAQKGLPVRAGFIHVP 166 (212)
T ss_pred HHHHHcCC-CeeEeCCCCceeeHHHHHHHHHHHHhcCCCceeEEEEcC
Confidence 88899999 455433221 133333344443222 24565555553
No 65
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=33.77 E-value=78 Score=24.43 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCC
Q 025580 53 DTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRP 88 (250)
Q Consensus 53 p~~fisHGsP~l~~~~~~~~~~~l~~l~~~l~~~~P 88 (250)
.++++.|||+.- . ...++++.+.+++..+
T Consensus 2 ~illvgHGSr~~------~-~~~~~~l~~~l~~~~~ 30 (103)
T cd03413 2 AVVFMGHGTDHP------S-NAVYAALEYVLREEDP 30 (103)
T ss_pred eEEEEECCCCch------h-hhHHHHHHHHHHhcCC
Confidence 368999999532 1 2567777777754444
No 66
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=33.31 E-value=79 Score=23.54 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=19.6
Q ss_pred EEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCC
Q 025580 54 TFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRP 88 (250)
Q Consensus 54 ~~fisHGsP~l~~~~~~~~~~~l~~l~~~l~~~~P 88 (250)
+++++|||. . ..+.+.+.++.+++.+..|
T Consensus 2 ivlv~hGS~-----~-~~~~~~~~~l~~~l~~~~~ 30 (101)
T cd03416 2 LLLVGHGSR-----D-PRAAEALEALAERLRERLP 30 (101)
T ss_pred EEEEEcCCC-----C-HHHHHHHHHHHHHHHhhCC
Confidence 578999993 2 2355678888887765443
No 67
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=32.21 E-value=2.7e+02 Score=24.38 Aligned_cols=110 Identities=14% Similarity=0.146 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeE---EecCCCCccCCCCCCCcccccccCCCCCCHH----H-HHHHHHHH
Q 025580 74 GFLQAWQAKVFSQRPNSILVISAHWDTDFPSV---NVVQRNDTIHDFYGFPKQMYDLKYPAPGAPE----L-AKRVKDLL 145 (250)
Q Consensus 74 ~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I---~~~~~~~~~~Df~gFp~~~y~~~y~~~G~~~----L-A~~i~~~l 145 (250)
...+.+.+.+.+.+||+||.++=|.-....++ ..+.....+-|-.|+.+.--.+. ..|... | .+++.+.+
T Consensus 48 ~~~~~l~~~l~~~~Pd~vih~G~a~~~~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i~--~~gp~~~~t~Lp~~~l~~~l 125 (215)
T PRK13197 48 KSAEVLKEAIEEVQPDAVICIGQAGGRTDITPERVAINIDDARIPDNEGNQPIDEPIV--EDGPAAYFSTLPIKAMVKAI 125 (215)
T ss_pred HHHHHHHHHHHHhCCCEEEEeccCCCCCcEEeEeeecccCCccCCCCCCCCcCCCccc--CCCCceeEcCCCHHHHHHHH
Confidence 44555555566779999999997765444332 22222223456556522110010 011110 1 37778888
Q ss_pred HhCCCCcccccCCCC---cccchhhhhhhhcC-CCCCCEEEeecC
Q 025580 146 KASGIKHVNEDRKRG---LDHGAWVPLMLMYP-EADIPVCQLSVQ 186 (250)
Q Consensus 146 ~~~Gid~~~~~~~~~---lDHG~~vPL~~l~p-~~diPVV~vS~~ 186 (250)
+++|+ ++..+.+-| =+|=.+--|++... ..++|.+=|.++
T Consensus 126 ~~~gi-p~~~S~dAG~YlCN~i~Y~sl~~~~~~~~~~~a~FIHvP 169 (215)
T PRK13197 126 REAGI-PASVSNTAGTFVCNHVMYGLLHLLDKKYPNIRAGFIHIP 169 (215)
T ss_pred HHcCC-CceeccCCCceeehHHHHHHHHHHHhcCCCceeEEEEcC
Confidence 99999 455443222 13333334444432 234666666654
No 68
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=31.60 E-value=77 Score=27.24 Aligned_cols=85 Identities=15% Similarity=0.142 Sum_probs=41.2
Q ss_pred ccceeeecccchhHHHHH--hhcc-eEeEEEeecCCCCCCCcCcCCccccceEEEEcCCCCCCCCCCChhHHHHHHHHHH
Q 025580 5 RIPVIAAKAGNFFLFFFL--INSV-TLFIFIHYSANPSNATRGQQSRLSVMDTFFISHGSPTLSIDESLPARGFLQAWQA 81 (250)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fisHGsP~l~~~~~~~~~~~l~~l~~ 81 (250)
||=|++.+.|..|..++= .|-. ...+.+=-+..+. +.....+...-+|++-+++-. + +.... +=+++.+
T Consensus 2 riail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~-~~~~~~A~~~gip~~~~~~~~--~--~~~~~---~~~~~~~ 73 (190)
T TIGR00639 2 RIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNKPD-AYGLERAAQAGIPTFVLSLKD--F--PSREA---FDQAIIE 73 (190)
T ss_pred eEEEEEcCCChhHHHHHHHHHcCCCCceEEEEEECCcc-chHHHHHHHcCCCEEEECccc--c--Cchhh---hhHHHHH
Confidence 677888888887776632 2221 1222221122221 111111222246766666621 1 11111 1124555
Q ss_pred HhhcCCCCEEEEEeCC
Q 025580 82 KVFSQRPNSILVISAH 97 (250)
Q Consensus 82 ~l~~~~PdaIVviS~H 97 (250)
.+++.+||.||+++=.
T Consensus 74 ~l~~~~~D~iv~~~~~ 89 (190)
T TIGR00639 74 ELRAHEVDLVVLAGFM 89 (190)
T ss_pred HHHhcCCCEEEEeCcc
Confidence 5667899999998643
No 69
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=31.49 E-value=45 Score=28.09 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=20.0
Q ss_pred HHHHHHHHhcccc-cCCeEEEEecCCcc
Q 025580 193 YHYNIGKALAPLK-EEGVLIIGSGSATH 219 (250)
Q Consensus 193 ~~~~LG~aL~~l~-derVlIIgSG~lSH 219 (250)
.+-++|+.|+..+ +++|+|||||=+-+
T Consensus 43 ~~~~~~~~l~~~~~~~~vLVLGTgEfMy 70 (155)
T PF12500_consen 43 ALQALAARLAAKRPGERVLVLGTGEFMY 70 (155)
T ss_pred HHHHHHHHHHhhcCCCcEEEEccchHHH
Confidence 3457777777665 48999999997644
No 70
>PRK07308 flavodoxin; Validated
Probab=31.33 E-value=2.7e+02 Score=22.12 Aligned_cols=74 Identities=22% Similarity=0.214 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCC-C--CCHHHHHHHHHHhccc--ccCC
Q 025580 134 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQM-H--HTGTYHYNIGKALAPL--KEEG 208 (250)
Q Consensus 134 ~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~-~--~~~~~~~~LG~aL~~l--~der 208 (250)
-.++|+.|.+.+.+.|++ +....-...|. -. + . +...|.+.... . .-+.....+=+.|.+. .++.
T Consensus 15 Te~iA~~ia~~l~~~g~~-~~~~~~~~~~~-----~~-l-~--~~d~vi~g~~t~g~G~~p~~~~~fl~~l~~~~l~~k~ 84 (146)
T PRK07308 15 TEEIADIVADKLRELGHD-VDVDECTTVDA-----SD-F-E--DADIAIVATYTYGDGELPDEIVDFYEDLADLDLSGKI 84 (146)
T ss_pred HHHHHHHHHHHHHhCCCc-eEEEecccCCH-----hH-h-c--cCCEEEEEeCccCCCCCCHHHHHHHHHHhcCCCCCCE
Confidence 456799999999988873 43211111111 01 1 1 22333333322 2 2244444444445443 5688
Q ss_pred eEEEEecCC
Q 025580 209 VLIIGSGSA 217 (250)
Q Consensus 209 VlIIgSG~l 217 (250)
++++|||+.
T Consensus 85 ~~vfG~Gd~ 93 (146)
T PRK07308 85 YGVVGSGDT 93 (146)
T ss_pred EEEEeeCCC
Confidence 999999984
No 71
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=30.69 E-value=90 Score=24.86 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=23.0
Q ss_pred eEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEE
Q 025580 53 DTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSIL 92 (250)
Q Consensus 53 p~~fisHGsP~l~~~~~~~~~~~l~~l~~~l~~~~PdaIV 92 (250)
..+.++|||- . ..+.+.++++.+.+++.-|+..|
T Consensus 2 aillv~fGS~-----~-~~~~~~~~~i~~~l~~~~p~~~V 35 (127)
T cd03412 2 AILLVSFGTS-----Y-PTAEKTIDAIEDKVRAAFPDYEV 35 (127)
T ss_pred eEEEEeCCCC-----C-HHHHHHHHHHHHHHHHHCCCCeE
Confidence 4688999992 2 24556788888888765565544
No 72
>PF04918 DltD_M: DltD central region; InterPro: IPR007002 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the central region of DltD.; PDB: 3BMA_C.
Probab=30.64 E-value=20 Score=30.02 Aligned_cols=24 Identities=17% Similarity=0.484 Sum_probs=13.4
Q ss_pred HHHHHHHhhcCCCCEEEEEeCCCCCC
Q 025580 76 LQAWQAKVFSQRPNSILVISAHWDTD 101 (250)
Q Consensus 76 l~~l~~~l~~~~PdaIVviS~Hw~~~ 101 (250)
|+.+++.+ ..=++|+||||.|++.
T Consensus 15 m~s~~~~l--k~KK~V~iiSPQWF~k 38 (163)
T PF04918_consen 15 MGSIGDQL--KNKKAVFIISPQWFTK 38 (163)
T ss_dssp HTTSHHHH--TT-EEEEE--GGG--T
T ss_pred HHhhhccc--cCCcEEEEECCcccCC
Confidence 44455555 3558999999999985
No 73
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=30.44 E-value=86 Score=23.02 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=16.5
Q ss_pred EEEEcCCCCCCCCCCChhHHHHHHHHHHHhhc
Q 025580 54 TFFISHGSPTLSIDESLPARGFLQAWQAKVFS 85 (250)
Q Consensus 54 ~~fisHGsP~l~~~~~~~~~~~l~~l~~~l~~ 85 (250)
.++++||+|.- ++....++++.+++.+
T Consensus 2 lllv~HGs~~~-----s~~~~~~~~~~~~l~~ 28 (101)
T cd03409 2 LLVVGHGSPYK-----DPYKKDIEAQAHNLAE 28 (101)
T ss_pred EEEEECCCCCC-----ccHHHHHHHHHHHHHH
Confidence 68999999632 1233456666665543
No 74
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=30.37 E-value=15 Score=29.51 Aligned_cols=18 Identities=44% Similarity=0.752 Sum_probs=14.5
Q ss_pred hcccccCCeEEEEecCCc
Q 025580 201 LAPLKEEGVLIIGSGSAT 218 (250)
Q Consensus 201 L~~l~derVlIIgSG~lS 218 (250)
+..+.+++++|||+|+..
T Consensus 7 ~~~l~~~~vlviGaGg~a 24 (135)
T PF01488_consen 7 FGDLKGKRVLVIGAGGAA 24 (135)
T ss_dssp HSTGTTSEEEEESSSHHH
T ss_pred cCCcCCCEEEEECCHHHH
Confidence 445677999999999964
No 75
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=29.96 E-value=61 Score=26.93 Aligned_cols=54 Identities=24% Similarity=0.289 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCCCHHHHHHHHHHhcccc-cCCeEEEEe
Q 025580 136 ELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLK-EEGVLIIGS 214 (250)
Q Consensus 136 ~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~~~~~~~~LG~aL~~l~-derVlIIgS 214 (250)
+|-+.|.+.|++.|++ + .|.|+- ...|+ |.-..++++++++=. +++|+|-||
T Consensus 13 ~lK~~l~~~L~~~G~e-V-------~D~G~~-------~~~dY------------pd~a~~va~~V~~~~~~~GIliCGT 65 (142)
T PRK08621 13 ELKEVVKDYLEDNKYE-V-------VDVTEE-------GAEDF------------VDSTLAVAKEVNKSEDNLGIVIDAY 65 (142)
T ss_pred HHHHHHHHHHHHCCCE-E-------EECCCC-------CCCCc------------HHHHHHHHHHHHcCCCceEEEEcCC
Confidence 5778899999999983 4 244540 00111 344678888886643 589999999
Q ss_pred cC
Q 025580 215 GS 216 (250)
Q Consensus 215 G~ 216 (250)
|-
T Consensus 66 Gi 67 (142)
T PRK08621 66 GA 67 (142)
T ss_pred Ch
Confidence 95
No 76
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=28.57 E-value=1.2e+02 Score=23.61 Aligned_cols=30 Identities=17% Similarity=0.290 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCC
Q 025580 53 DTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRP 88 (250)
Q Consensus 53 p~~fisHGsP~l~~~~~~~~~~~l~~l~~~l~~~~P 88 (250)
.+++++|||. . ..+.+.++++.+.+++..+
T Consensus 3 ~lvlv~hGS~-----~-~~~~~~~~~~~~~l~~~~~ 32 (126)
T PRK00923 3 GLLLVGHGSR-----L-PYNKEVVTKIAEKIKEKHP 32 (126)
T ss_pred EEEEEeCCCC-----C-hHHHHHHHHHHHHHHHhCC
Confidence 4789999993 1 2344567777777654333
No 77
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=28.46 E-value=1.2e+02 Score=23.16 Aligned_cols=29 Identities=10% Similarity=0.036 Sum_probs=19.3
Q ss_pred EEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCC
Q 025580 54 TFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRP 88 (250)
Q Consensus 54 ~~fisHGsP~l~~~~~~~~~~~l~~l~~~l~~~~P 88 (250)
+++++|||.. ....+.++++.+.+.+.-+
T Consensus 3 ~llv~HGS~~------~~~~~~~~~l~~~l~~~~~ 31 (117)
T cd03414 3 VVLVGRGSSD------PDANADVAKIARLLEEGTG 31 (117)
T ss_pred EEEEcCCCCC------HHHHHHHHHHHHHHHHhcC
Confidence 6789999941 2345678888887754333
No 78
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=27.63 E-value=3.4e+02 Score=24.13 Aligned_cols=94 Identities=10% Similarity=0.066 Sum_probs=49.5
Q ss_pred HHHHHHHHhhcCCCCEEEEEeCCCCCCCCe---EEecCCCC---ccCCCCCC-CcccccccCCCCCCHH----H-HHHHH
Q 025580 75 FLQAWQAKVFSQRPNSILVISAHWDTDFPS---VNVVQRND---TIHDFYGF-PKQMYDLKYPAPGAPE----L-AKRVK 142 (250)
Q Consensus 75 ~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~---I~~~~~~~---~~~Df~gF-p~~~y~~~y~~~G~~~----L-A~~i~ 142 (250)
..+.+.+.+.+.+||+||.+.=+.-....+ ++++.... .+-|-.|. |.. -.+ ...|... | .+++.
T Consensus 49 ~~~~l~~~i~~~~Pd~Vi~~G~a~gr~~itlErvAiN~~d~~~~~ipDn~G~~p~~-~~I--~~~gp~ay~stLpv~~iv 125 (222)
T PRK13195 49 SIAAAQQAIAEIEPALVIMLGEYPGRSMITVERLAQNVNDCGRYGLADCAGRVLVG-EPT--DPAGPVAYHATVPVRAMV 125 (222)
T ss_pred HHHHHHHHHHHHCCCEEEEeCccCCcCceEeEEEEEecccccccCCCCCCCCcCCC-Ccc--cCCCcceeecCCCHHHHH
Confidence 344555556678999999998665444332 23322211 25555555 211 011 1111111 1 47889
Q ss_pred HHHHhCCCCcccccCC---CCcccchhhhhhhh
Q 025580 143 DLLKASGIKHVNEDRK---RGLDHGAWVPLMLM 172 (250)
Q Consensus 143 ~~l~~~Gid~~~~~~~---~~lDHG~~vPL~~l 172 (250)
+.++++|+ ++..+.+ +-=+|=.+--|++.
T Consensus 126 ~~l~~~gi-pa~vS~~AGtYvCN~v~Y~sL~~~ 157 (222)
T PRK13195 126 LAMRKAGV-PADVSDAAGTFVCNHLMYGVLHHL 157 (222)
T ss_pred HHHHhcCC-CceEecCCCcceehHHHHHHHHHH
Confidence 99999999 5654432 22245455555554
No 79
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=27.17 E-value=80 Score=17.99 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=17.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCC
Q 025580 131 APGAPELAKRVKDLLKASGIK 151 (250)
Q Consensus 131 ~~G~~~LA~~i~~~l~~~Gid 151 (250)
-.|+++.|.++.+..++.|+.
T Consensus 13 ~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 13 KAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HCCCHHHHHHHHHHHHHhCCC
Confidence 468899999999999988874
No 80
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=26.10 E-value=1.2e+02 Score=25.86 Aligned_cols=40 Identities=13% Similarity=0.115 Sum_probs=21.4
Q ss_pred CCCCEEEeecCCCC-----CHHHHHHHHHHhcccccCCeEEEEecC
Q 025580 176 ADIPVCQLSVQMHH-----TGTYHYNIGKALAPLKEEGVLIIGSGS 216 (250)
Q Consensus 176 ~diPVV~vS~~~~~-----~~~~~~~LG~aL~~l~derVlIIgSG~ 216 (250)
.+-|.|-+...... +.+..-+|.+.|.+.. .+|+|+|++.
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~-~~vvl~g~~~ 147 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKERG-YRVVLLGGPE 147 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT--EEEE--SSH
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhC-ceEEEEccch
Confidence 45677777765443 4566667777776643 4577777654
No 81
>KOG3861 consensus Sensory cilia assembly protein [Extracellular structures]
Probab=26.03 E-value=56 Score=31.03 Aligned_cols=37 Identities=27% Similarity=0.273 Sum_probs=26.8
Q ss_pred CCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580 207 EGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR 250 (250)
Q Consensus 207 erVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd 250 (250)
.+|+++|||.+-|.-.-.... -++-||..+ +++..|+
T Consensus 207 Gki~vvGS~~mfhD~Yldkee------N~kifd~~v-~~L~~g~ 243 (438)
T KOG3861|consen 207 GKILVVGSGYMFHDKYLDKEE------NDKIFDYLV-KLLGGGE 243 (438)
T ss_pred ceEEEeeeeeeechhhccccc------cchHHHHHH-HHhcCCc
Confidence 579999999999987655432 256777766 7776663
No 82
>TIGR03565 alk_sulf_monoox alkanesulfonate monooxygenase, FMNH(2)-dependent. Members of this protein family are monooxygenases that catalyze desulfonation of aliphatic sulfonates such as methane sulfonate. This enzyme uses reduced FMN, although various others members of the same luciferase-like monooxygenase family (pfam00296) are F420-dependent enzymes.
Probab=25.57 E-value=3.9e+02 Score=24.78 Aligned_cols=86 Identities=14% Similarity=0.099 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCC-CCCCEEEeecCCCCCHHHHHHHHHHhcccccCCeE
Q 025580 132 PGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPE-ADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVL 210 (250)
Q Consensus 132 ~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~-~diPVV~vS~~~~~~~~~~~~LG~aL~~l~derVl 210 (250)
+.+.+...++++.+.+.|||.+-... ...-...|+-+..+-.. ..|.+.....+...+|....+--..|..+.+.|+.
T Consensus 23 ~~~~~~~~~~a~~AE~~Gfd~~~~~~-~~~~~~p~~~laalA~~T~rI~l~~~v~~~~~~P~~~A~~~AtLD~lS~GR~~ 101 (346)
T TIGR03565 23 AVDHGYLKQIAQAADRLGYTGVLLPT-GRSCEDSWVTASALAPVTERLKFLVAVRPGLMSPTVAARMAATLDRLSGGRLL 101 (346)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecC-CCCCCCHHHHHHHHHHhcCeeEEEEEecCCCcCHHHHHHHHHHHHHHcCCCEE
Confidence 33677888899999999997333222 11122345555555444 56777654333455677666666667777778887
Q ss_pred E-EEecCCc
Q 025580 211 I-IGSGSAT 218 (250)
Q Consensus 211 I-IgSG~lS 218 (250)
+ ||+|..-
T Consensus 102 lgvg~G~~~ 110 (346)
T TIGR03565 102 INVVTGGDP 110 (346)
T ss_pred EEEeCCCCH
Confidence 7 8998643
No 83
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=25.56 E-value=2.1e+02 Score=28.07 Aligned_cols=52 Identities=21% Similarity=0.218 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeec
Q 025580 134 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSV 185 (250)
Q Consensus 134 ~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~ 185 (250)
..+.+.+|++.|+++|+|.+-....=|.=|=+-.-+.--...+.||||++..
T Consensus 321 a~~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~~GiPvv~~~~ 372 (431)
T TIGR01918 321 SKQFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHMCT 372 (431)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEee
Confidence 4578999999999999973333333455554433333333447899998765
No 84
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=24.94 E-value=44 Score=30.19 Aligned_cols=67 Identities=12% Similarity=0.154 Sum_probs=38.3
Q ss_pred HHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCCCHHHHHHHHHHhcccccCCeEEEEe
Q 025580 139 KRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGS 214 (250)
Q Consensus 139 ~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~~~~~~~~LG~aL~~l~derVlIIgS 214 (250)
..+.+.|.+.|+| +.......||+|-+.+ +..+.+-++.+..++...+.+ |-.+-+....+|+||+-
T Consensus 48 ~~~~~~L~~~G~D-~iTlGNH~fD~gel~~---~l~~~~~~l~~aN~~~~~pg~-----~~~i~~~~G~kIaVigl 114 (255)
T cd07382 48 PKIAKELLSAGVD-VITMGNHTWDKKEILD---FIDEEPRLLRPANYPPGTPGR-----GYGVVEVNGKKIAVINL 114 (255)
T ss_pred HHHHHHHHhcCCC-EEEecccccCcchHHH---HHhcCcCceEeeecCCCCCCC-----CeEEEEECCEEEEEEEE
Confidence 5677788899997 5445678999994333 223344567776654322110 11222333467888863
No 85
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=24.70 E-value=1.3e+02 Score=24.09 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCCCCCCChhHHHHHHHHHHHhh
Q 025580 53 DTFFISHGSPTLSIDESLPARGFLQAWQAKVF 84 (250)
Q Consensus 53 p~~fisHGsP~l~~~~~~~~~~~l~~l~~~l~ 84 (250)
..+.++|||. +..+.+.++++.+.++
T Consensus 2 ~lllvgHGSR------~~~~~~~~~~la~~l~ 27 (125)
T cd03415 2 AIIIITHGSR------RNTFNEDMEEWAAYLE 27 (125)
T ss_pred EEEEEecCCC------ChHHHHHHHHHHHHHH
Confidence 3689999993 2356677888888875
No 86
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=24.21 E-value=1.2e+02 Score=25.11 Aligned_cols=54 Identities=19% Similarity=0.321 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCC-CCCCEEEeecCCCCCHHHHHHHHHHhccc-ccCCeEEE
Q 025580 135 PELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPE-ADIPVCQLSVQMHHTGTYHYNIGKALAPL-KEEGVLII 212 (250)
Q Consensus 135 ~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~-~diPVV~vS~~~~~~~~~~~~LG~aL~~l-~derVlII 212 (250)
-+|-+.|.+.|++.|++ + .|.|+ .+ -|+ |.-..++++++++= .+++|+|-
T Consensus 12 ~~lK~~i~~~L~~~G~e-V-------~D~G~--------~~~~dY------------pd~a~~va~~V~~~e~~~GIliC 63 (141)
T TIGR01118 12 KRLKDVIKNFLVDNGFE-V-------IDVTE--------GDGQDF------------VDVTLAVASEVQKDEQNLGIVID 63 (141)
T ss_pred HHHHHHHHHHHHHCCCE-E-------EEcCC--------CCCCCc------------HHHHHHHHHHHHcCCCceEEEEc
Confidence 45778899999999983 4 45664 11 111 34567888888664 35889999
Q ss_pred EecC
Q 025580 213 GSGS 216 (250)
Q Consensus 213 gSG~ 216 (250)
|||-
T Consensus 64 GtGi 67 (141)
T TIGR01118 64 AYGA 67 (141)
T ss_pred CCCH
Confidence 9996
No 87
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=24.08 E-value=5.1e+02 Score=22.93 Aligned_cols=97 Identities=16% Similarity=0.167 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-----CCeEEecCCCCccCCCCCCCcccccccCCCCCCHHH-----HHHH
Q 025580 72 ARGFLQAWQAKVFSQRPNSILVISAHWDTD-----FPSVNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPEL-----AKRV 141 (250)
Q Consensus 72 ~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~-----~~~I~~~~~~~~~~Df~gFp~~~y~~~y~~~G~~~L-----A~~i 141 (250)
..+..+.+.+.+.+.+||+++++.=-.-.. ..+|++.+ --+-|-.|.-+.- .....-|..+. .+++
T Consensus 45 f~~s~~~l~~~i~~~qPd~vl~iG~A~GR~~iT~ERVAINv~D--arIpDN~G~qpiD--epI~~dGpaAYfstlPvkam 120 (207)
T COG2039 45 FKKSIDALVQAIAEVQPDLVLAIGQAGGRTKITPERVAINVDD--ARIPDNAGNQPID--EPIDPDGPAAYFSTLPVKAM 120 (207)
T ss_pred HHHHHHHHHHHHHhhCCCeEEEecccCCCCcCChhheeecccc--ccCCCCCCCCcCC--CccCCCCchhhhhcCcHHHH
Confidence 345566777778899999999996221111 23444433 3377766662211 11122233222 4678
Q ss_pred HHHHHhCCCCcccccCCCC---cccchhhhhhhhc
Q 025580 142 KDLLKASGIKHVNEDRKRG---LDHGAWVPLMLMY 173 (250)
Q Consensus 142 ~~~l~~~Gid~~~~~~~~~---lDHG~~vPL~~l~ 173 (250)
.+.++++|+ |+..+.+-| -.|=.+.-|+++.
T Consensus 121 v~~~~~~Gi-PA~vS~sAGTyvCNhvmY~~l~~~~ 154 (207)
T COG2039 121 VQAIREAGI-PASVSNSAGTYVCNHVMYGLLHHLA 154 (207)
T ss_pred HHHHHHcCC-ChhhhcccchhhhHHHHHHHHHHHH
Confidence 899999999 666554432 2444444455543
No 88
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=23.88 E-value=98 Score=30.36 Aligned_cols=52 Identities=21% Similarity=0.239 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeec
Q 025580 134 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSV 185 (250)
Q Consensus 134 ~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~ 185 (250)
....+.+|.+.|+++|+|.+-....=|.=|=+-.-+.--...+.||||++..
T Consensus 321 a~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GIPvV~i~~ 372 (431)
T TIGR01917 321 SKQFAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHICT 372 (431)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEee
Confidence 4568999999999999973333334455554433333333457899999875
No 89
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=23.82 E-value=4.1e+02 Score=21.81 Aligned_cols=79 Identities=18% Similarity=0.127 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCC----------CHHHHHHHHHHhcc
Q 025580 134 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHH----------TGTYHYNIGKALAP 203 (250)
Q Consensus 134 ~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~----------~~~~~~~LG~aL~~ 203 (250)
+++-..+..+.+.+.++| .-.. .+.+..... ..-...+..+|+|-+...... +.+....+++.|.+
T Consensus 40 ~~~~~~~~~~~~~~~~~d-~ii~--~~~~~~~~~-~~~~l~~~~ip~v~~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~ 115 (264)
T cd01537 40 DAEKQLSALENLIARGVD-GIII--APSDLTAPT-IVKLARKAGIPVVLVDRDIPDGDRVPSVGSDNEQAGYLAGEHLAE 115 (264)
T ss_pred CHHHHHHHHHHHHHcCCC-EEEE--ecCCCcchh-HHHHhhhcCCCEEEeccCCCCCcccceEecCcHHHHHHHHHHHHH
Confidence 445555566666666775 2221 223333322 122224467898876543211 12344555566655
Q ss_pred cccCCeEEEEecC
Q 025580 204 LKEEGVLIIGSGS 216 (250)
Q Consensus 204 l~derVlIIgSG~ 216 (250)
...++|++|+...
T Consensus 116 ~g~~~i~~i~~~~ 128 (264)
T cd01537 116 KGHRRIALLAGPL 128 (264)
T ss_pred hcCCcEEEEECCC
Confidence 5568999997543
No 90
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=23.39 E-value=2.7e+02 Score=26.13 Aligned_cols=76 Identities=17% Similarity=0.261 Sum_probs=48.6
Q ss_pred HHHHHHHHhCCCCcccccCCCCcccchhhhhhh-hcCCCCCCEEEeecCCCCCHHHHHHHHHHhcccccCCeEEEEecCC
Q 025580 139 KRVKDLLKASGIKHVNEDRKRGLDHGAWVPLML-MYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGSA 217 (250)
Q Consensus 139 ~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~-l~p~~diPVV~vS~~~~~~~~~~~~LG~aL~~l~derVlIIgSG~l 217 (250)
+-|.+.|+++|+. ......-+.|---+.+..+ .-++.|+--|.++....++. ++|=+|++-|++.++++|++.-=
T Consensus 115 ~gi~~eL~~aG~~-~~g~~~~~~~~~~~~~~~~~~~~d~~VgAVvvg~D~hfsy---~KL~kA~~yLqnP~clflatn~D 190 (306)
T KOG2882|consen 115 EGIREELDEAGFE-YFGGGPDGKDTDGAKSFVLSIGLDPDVGAVVVGYDEHFSY---PKLMKALNYLQNPGCLFLATNRD 190 (306)
T ss_pred hhhhHHHHHcCce-eecCCCCcccccccccchhhcCCCCCCCEEEEecccccCH---HHHHHHHHHhCCCCcEEEeccCc
Confidence 3456677888884 2222222222222333333 33577899999998777764 56667999999999999999863
Q ss_pred c
Q 025580 218 T 218 (250)
Q Consensus 218 S 218 (250)
+
T Consensus 191 ~ 191 (306)
T KOG2882|consen 191 A 191 (306)
T ss_pred c
Confidence 3
No 91
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=22.54 E-value=38 Score=27.60 Aligned_cols=56 Identities=29% Similarity=0.356 Sum_probs=35.4
Q ss_pred HHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecCCCCccCCCCCCCcccccccCCCCCCHHHHHHHHHHHHhCCCCccc
Q 025580 76 LQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVN 154 (250)
Q Consensus 76 l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~~~~~~~~Df~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~ 154 (250)
|+-+=+.+++...|+++|+-| .+..+|||-|++.+.++ +..++|...+++.|+ .+.
T Consensus 38 l~l~L~~~k~~g~~~lfVi~P-------------vNg~wydytG~~~~~r~---------~~y~kI~~~~~~~gf-~v~ 93 (130)
T PF04914_consen 38 LQLLLDVCKELGIDVLFVIQP-------------VNGKWYDYTGLSKEMRQ---------EYYKKIKYQLKSQGF-NVA 93 (130)
T ss_dssp HHHHHHHHHHTT-EEEEEE-----------------HHHHHHTT--HHHHH---------HHHHHHHHHHHTTT---EE
T ss_pred HHHHHHHHHHcCCceEEEecC-------------CcHHHHHHhCCCHHHHH---------HHHHHHHHHHHHCCC-EEE
Confidence 444445556788999988764 34679999999887553 346889999999999 454
No 92
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=22.37 E-value=1.1e+02 Score=27.06 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCCC
Q 025580 72 ARGFLQAWQAKVFSQRPNSILVISAHW 98 (250)
Q Consensus 72 ~~~~l~~l~~~l~~~~PdaIVviS~Hw 98 (250)
..+.++++.+.+++.++|.||++| |+
T Consensus 156 ~~~~~~~~v~~~~~~~~D~iVvl~-H~ 181 (257)
T cd07406 156 YVETARELVDELREQGADLIIALT-HM 181 (257)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEe-cc
Confidence 345566666667778999999997 76
No 93
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=22.22 E-value=73 Score=25.94 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=19.8
Q ss_pred HHHHHHhcccccCCeEEEEecCC
Q 025580 195 YNIGKALAPLKEEGVLIIGSGSA 217 (250)
Q Consensus 195 ~~LG~aL~~l~derVlIIgSG~l 217 (250)
..|.+.|+++.+-.|+|||||.-
T Consensus 58 e~f~~vl~~a~~~EilliGTG~~ 80 (127)
T COG3737 58 EDFERVLAEAPDVEILLIGTGAR 80 (127)
T ss_pred HHHHHHHhcCCCceEEEEecCcc
Confidence 57888999998888999999973
No 94
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=21.83 E-value=2e+02 Score=18.86 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=22.2
Q ss_pred CEEEeecCCCCCHHHHHHHHHHhccc
Q 025580 179 PVCQLSVQMHHTGTYHYNIGKALAPL 204 (250)
Q Consensus 179 PVV~vS~~~~~~~~~~~~LG~aL~~l 204 (250)
|+|.|.+..+.+.++--+|.++|.++
T Consensus 1 P~i~i~~~~grt~eqk~~l~~~i~~~ 26 (58)
T cd00491 1 PFVQIYILEGRTDEQKRELIERVTEA 26 (58)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 88999987778899989999988775
No 95
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=21.80 E-value=4e+02 Score=26.80 Aligned_cols=83 Identities=11% Similarity=0.224 Sum_probs=45.0
Q ss_pred ccceEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecCCCCccCCCCCCCcccccccC
Q 025580 50 SVMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKY 129 (250)
Q Consensus 50 ~~~p~~fisHGsP~l~~~~~~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~~~~~~~~Df~gFp~~~y~~~y 129 (250)
+-.|.+++.|.+|-.. ..+..+.......-| +|+||.+-.+.. +......+ .|..+.-...-+..|
T Consensus 62 TGkpgV~~~tsGPGat--------N~~tgla~A~~d~~P--ll~itGqv~~~~--~g~~afQe--~D~~~l~~p~tk~~~ 127 (550)
T COG0028 62 TGKPGVCLVTSGPGAT--------NLLTGLADAYMDSVP--LLAITGQVPTSL--IGTDAFQE--VDQVGLFRPITKYNF 127 (550)
T ss_pred cCCCEEEEECCCCcHH--------HHHHHHHHHHhcCCC--EEEEeCCccccc--cCcchhhh--cchhhHhhhhheeEE
Confidence 3568899999886433 233344443333333 778877644432 21111112 265555444445555
Q ss_pred CCCCCHHHHHHHHHHHH
Q 025580 130 PAPGAPELAKRVKDLLK 146 (250)
Q Consensus 130 ~~~G~~~LA~~i~~~l~ 146 (250)
......++.+-+.++.+
T Consensus 128 ~v~~~~~ip~~i~~Af~ 144 (550)
T COG0028 128 EVRSPEDIPEVVARAFR 144 (550)
T ss_pred EeCCHHHHHHHHHHHHH
Confidence 66666777777766665
No 96
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.40 E-value=2.6e+02 Score=26.02 Aligned_cols=38 Identities=29% Similarity=0.418 Sum_probs=26.1
Q ss_pred EcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEEEEe
Q 025580 57 ISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVIS 95 (250)
Q Consensus 57 isHGsP~l~~~~~~~~~~~l~~l~~~l~~~~PdaIVviS 95 (250)
+.||||.=.++.=+...+.++++++.. ...||-|+..+
T Consensus 60 LAHGSptg~Ie~fsnv~ELY~kIAe~F-~Is~~dIlfcT 97 (334)
T KOG3938|consen 60 LAHGSPTGRIEGFSNVRELYQKIAEAF-DISPDDILFCT 97 (334)
T ss_pred eccCCccceecccccHHHHHHHHHHHh-cCCccceEEEe
Confidence 589999888755456677788888765 34555555444
No 97
>PF11432 DUF3197: Protein of unknown function (DUF3197); InterPro: IPR024443 This domain, whose function is unknown, is found in bacterial proteins.; PDB: 1WN9_A 1WNA_A.
Probab=20.98 E-value=1.2e+02 Score=24.26 Aligned_cols=67 Identities=19% Similarity=0.299 Sum_probs=35.6
Q ss_pred HHHHHHhh-cCCCCEEEEEeCCCCCCCC------eEEecCCCCccCCCCCCCcccccccCCCCCCHHHHHHHHHHHHhCC
Q 025580 77 QAWQAKVF-SQRPNSILVISAHWDTDFP------SVNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASG 149 (250)
Q Consensus 77 ~~l~~~l~-~~~PdaIVviS~Hw~~~~~------~I~~~~~~~~~~Df~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~G 149 (250)
+.+.+.++ ..=|+++|++-.+|+.... -+..+.++-+.-| .|.+ .|-..|+.+||+ +...+.+.|
T Consensus 2 ~al~~aLk~~~~p~~~v~liTDwQd~R~~ARYa~ll~~gk~~llt~d--AFGP-----afG~~G~~ALaE-Lv~wl~~~G 73 (113)
T PF11432_consen 2 QALKAALKGLRFPEAKVYLITDWQDQRPQARYALLLRGGKEPLLTPD--AFGP-----AFGPEGERALAE-LVRWLQERG 73 (113)
T ss_dssp HHHHHHHTT---TT-EEEEEEE--SSCCC--EEEEEE-SS-EEEEEE--EEST-----TS-TTHHHHHHH-HHHHHHHTT
T ss_pred hhHHHHHhcCCCCCceEEEEeccccchhhhhhhhheecCCccccccc--ccCc-----ccCccHHHHHHH-HHHHHHHcC
Confidence 44555554 3458999999889998642 2333333334444 2322 257788999997 567788889
Q ss_pred CC
Q 025580 150 IK 151 (250)
Q Consensus 150 id 151 (250)
++
T Consensus 74 ~~ 75 (113)
T PF11432_consen 74 AR 75 (113)
T ss_dssp -E
T ss_pred Cc
Confidence 83
No 98
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=20.84 E-value=4.4e+02 Score=21.17 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=8.7
Q ss_pred HHHHHHHHHhCCCC
Q 025580 138 AKRVKDLLKASGIK 151 (250)
Q Consensus 138 A~~i~~~l~~~Gid 151 (250)
...+.+.++++|+.
T Consensus 115 vv~vmd~l~~aG~~ 128 (141)
T PRK11267 115 LMKVMDTLHQAGYL 128 (141)
T ss_pred HHHHHHHHHHcCCC
Confidence 34466667777763
No 99
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=20.60 E-value=5.8e+02 Score=22.29 Aligned_cols=113 Identities=13% Similarity=0.087 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeE---EecCCCCccCCCCCC-CcccccccCCCCCCHH-----HHHHHH
Q 025580 72 ARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSV---NVVQRNDTIHDFYGF-PKQMYDLKYPAPGAPE-----LAKRVK 142 (250)
Q Consensus 72 ~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I---~~~~~~~~~~Df~gF-p~~~y~~~y~~~G~~~-----LA~~i~ 142 (250)
+.+..+.+.+.+.+.+||+||.++=+.-....++ +.+...-.+-|-.|. |.. ..+.-...|... =.+++.
T Consensus 46 ~~~~~~~l~~~~~~~~Pd~vi~~G~a~gr~~i~lEr~A~N~~d~~~pDn~G~~~~~-~~i~~~~~gp~~y~stLpv~~l~ 124 (211)
T PRK13196 46 PRAAMAALSRLLDELQPSAVLLTGLAAGRPQVTLERVAVNVMDFSIPDNAGQTYRD-TPVCTEPDAPAAYLSTLPLRAIL 124 (211)
T ss_pred hhHHHHHHHHHHHHhCCCEEEEecccCCcCcEEEEEEEeccccCCCCCCCCCCCCC-CCcccCCCCccceecCCCHHHHH
Confidence 3344555566666789999999986654443332 332222234555554 221 111001111110 146678
Q ss_pred HHHHhCCCCcccccCCC---CcccchhhhhhhhcCC--CCCCEEEeecC
Q 025580 143 DLLKASGIKHVNEDRKR---GLDHGAWVPLMLMYPE--ADIPVCQLSVQ 186 (250)
Q Consensus 143 ~~l~~~Gid~~~~~~~~---~lDHG~~vPL~~l~p~--~diPVV~vS~~ 186 (250)
+.++++|+ ++..+.+- -=.|-.+--|++.... .++|..=|.++
T Consensus 125 ~~l~~~gi-p~~iS~~AG~YlCN~v~Y~sL~~~~~~~~~~~~agFIHVP 172 (211)
T PRK13196 125 AAWHDAGI-PGHISNTAGLYVCNFVLYHALHQLHLRGRAEVPCGFLHVP 172 (211)
T ss_pred HHHHhcCC-CceEccCCCceeehHHHHHHHHHHHhcCCCCCeeEEEEcC
Confidence 88889998 55544322 1244444455554322 24666666654
No 100
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=20.14 E-value=2.9e+02 Score=23.81 Aligned_cols=81 Identities=15% Similarity=0.167 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeE---EecCCCCccCCCCCC-CcccccccCCCCCCHH-----HHHHHH
Q 025580 72 ARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSV---NVVQRNDTIHDFYGF-PKQMYDLKYPAPGAPE-----LAKRVK 142 (250)
Q Consensus 72 ~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I---~~~~~~~~~~Df~gF-p~~~y~~~y~~~G~~~-----LA~~i~ 142 (250)
+....+.+.+.+.+.+||+||.+.=+.-.....+ +.+...-.+-|-.|+ |.. - .....|... -.+++.
T Consensus 45 ~~~~~~~l~~~l~~~~PdlVIhlGva~~~~~i~lEr~A~N~~d~~~pD~~G~~p~~-~--~i~~~gp~~~~t~lp~~~l~ 121 (202)
T PF01470_consen 45 YEKAFEALEELLEEHQPDLVIHLGVAGGRKSIRLERVAINWADFRIPDNDGRQPKD-E--PIVPDGPEAYFTTLPVRALV 121 (202)
T ss_dssp HHHHHHHHHHHHHHH--SEEEEEEE-TT-SSEEEESEEES-BE-SS--TTS---ES-B---SSTTS-SEEE-BS-HHHHH
T ss_pred hHhHHHHHHHHHHhcCCcEEEEEeecCCcchhhHHHHhhccCCCcCCcccCCccCC-c--cccCCCccceecCCCHHHHH
Confidence 3344555556666779999999875544433322 222111124455555 221 0 111122111 246788
Q ss_pred HHHHhCCCCccccc
Q 025580 143 DLLKASGIKHVNED 156 (250)
Q Consensus 143 ~~l~~~Gid~~~~~ 156 (250)
+.|+++|+ ++..+
T Consensus 122 ~~l~~~gi-p~~~S 134 (202)
T PF01470_consen 122 EALREAGI-PVEIS 134 (202)
T ss_dssp HHHHHTT---EEEE
T ss_pred HHHHHcCC-CCccc
Confidence 88888999 46543
No 101
>PF10035 DUF2179: Uncharacterized protein conserved in bacteria (DUF2179); InterPro: IPR019264 This entry, found mostly in hypothetical bacterial proteins, has no known function. ; PDB: 3HLU_B.
Probab=20.10 E-value=1.2e+02 Score=20.24 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=14.6
Q ss_pred HHHHHHHhhcCCCCEEEEEeC
Q 025580 76 LQAWQAKVFSQRPNSILVISA 96 (250)
Q Consensus 76 l~~l~~~l~~~~PdaIVviS~ 96 (250)
+.++.+.+++.+|+|.|+++.
T Consensus 29 ~~~l~~~I~~~Dp~AFi~v~~ 49 (55)
T PF10035_consen 29 LPKLKKIIKEIDPKAFISVSD 49 (55)
T ss_dssp HHHHHHHHHCC-TT-EEEE--
T ss_pred HHHHHHHHHHhCCCEEEEEEc
Confidence 567778888999999999975
Done!