Query 025580
Match_columns 250
No_of_seqs 152 out of 1203
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 13:12:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025580.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025580hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pw6_A Uncharacterized protein 100.0 4.9E-58 1.7E-62 413.2 16.0 194 51-249 14-209 (271)
2 3vsj_B 2-amino-5-chlorophenol 100.0 2.4E-42 8.1E-47 316.4 13.1 196 51-250 5-233 (312)
3 3vsj_A 2-amino-5-chlorophenol 100.0 2E-41 6.8E-46 303.6 15.9 196 51-250 3-213 (271)
4 1b4u_B LIGA, LIGB, protocatech 100.0 9.2E-40 3.2E-44 297.9 12.3 188 48-250 1-220 (302)
5 3bcz_A Protein MEMO1; alpha/be 99.5 9.8E-15 3.4E-19 132.1 8.2 169 54-250 40-224 (293)
6 1yqe_A Hypothetical UPF0204 pr 60.8 82 0.0028 27.8 10.9 111 87-217 70-197 (282)
7 2gfq_A UPF0204 protein PH0006; 58.4 36 0.0012 30.3 8.2 113 85-217 90-220 (298)
8 2q5c_A NTRC family transcripti 52.9 14 0.00049 30.4 4.3 68 138-222 41-110 (196)
9 2odf_A AGR_C_3887P, hypothetic 47.8 15 0.0005 31.9 3.7 69 134-204 176-247 (257)
10 3lyh_A Cobalamin (vitamin B12) 47.7 21 0.00071 26.8 4.2 32 48-85 2-33 (126)
11 2pju_A Propionate catabolism o 47.3 25 0.00085 29.9 5.1 44 172-222 77-122 (225)
12 2xws_A Sirohydrochlorin cobalt 45.8 23 0.0008 26.5 4.3 31 52-88 4-34 (133)
13 1tjn_A Sirohydrochlorin cobalt 41.2 29 0.00099 27.3 4.3 31 52-88 25-55 (156)
14 2q7s_A N-formylglutamate amido 39.7 18 0.00061 32.0 3.0 71 130-204 200-278 (290)
15 3ro0_A Pyrrolidone-carboxylate 39.1 1.7E+02 0.0058 24.7 9.0 96 74-173 49-156 (223)
16 3s5p_A Ribose 5-phosphate isom 36.8 18 0.0006 29.8 2.3 55 136-215 34-89 (166)
17 3he8_A Ribose-5-phosphate isom 36.6 42 0.0014 26.9 4.5 54 136-215 13-68 (149)
18 3qe2_A CPR, P450R, NADPH--cyto 35.6 79 0.0027 30.6 7.2 81 134-219 32-119 (618)
19 2xvy_A Chelatase, putative; me 33.2 25 0.00086 29.8 2.9 19 130-148 120-138 (269)
20 3ph3_A Ribose-5-phosphate isom 32.2 53 0.0018 26.9 4.5 54 136-215 33-88 (169)
21 1x10_A Pyrrolidone-carboxylate 31.0 1.6E+02 0.0055 24.4 7.5 91 74-172 47-153 (208)
22 3jy6_A Transcriptional regulat 30.9 1.6E+02 0.0056 23.8 7.6 76 135-216 49-133 (276)
23 1a2z_A Pyrrolidone carboxyl pe 30.8 1.8E+02 0.006 24.5 7.8 106 72-185 46-168 (220)
24 1bvy_F Protein (cytochrome P45 30.2 1.2E+02 0.0041 24.5 6.5 76 134-219 35-116 (191)
25 3a9s_A D-arabinose isomerase; 29.8 43 0.0015 32.7 4.1 113 79-216 76-189 (595)
26 4hps_A Pyrrolidone-carboxylate 29.7 1.5E+02 0.005 25.2 7.1 96 74-173 70-177 (228)
27 3egc_A Putative ribose operon 29.4 2.3E+02 0.0079 23.0 8.6 77 134-215 49-134 (291)
28 3rot_A ABC sugar transporter, 29.0 74 0.0025 26.4 5.2 78 134-214 46-138 (297)
29 3f6r_A Flavodoxin; FMN binding 28.6 1.8E+02 0.0061 21.6 6.9 18 134-151 15-32 (148)
30 1o51_A Hypothetical protein TM 27.9 1.5E+02 0.005 22.4 6.1 75 135-212 29-105 (114)
31 3g1w_A Sugar ABC transporter; 27.7 1.1E+02 0.0038 25.2 6.0 77 134-213 46-134 (305)
32 3tb6_A Arabinose metabolism tr 26.4 2.6E+02 0.0088 22.6 8.4 40 175-214 97-145 (298)
33 2vvp_A Ribose-5-phosphate isom 26.4 34 0.0012 27.9 2.3 55 136-215 16-72 (162)
34 4ds3_A Phosphoribosylglycinami 25.9 68 0.0023 26.8 4.3 85 1-95 5-94 (209)
35 2xwp_A Sirohydrochlorin cobalt 25.2 67 0.0023 27.3 4.2 34 52-91 3-37 (264)
36 4em8_A Ribose 5-phosphate isom 24.8 35 0.0012 27.4 2.1 54 136-215 20-74 (148)
37 1wn9_A The hypothetical protei 23.7 62 0.0021 25.3 3.3 68 74-150 12-86 (131)
38 1iu8_A Pyrrolidone-carboxylate 23.3 2.8E+02 0.0096 22.9 7.6 92 73-172 43-150 (206)
39 3m20_A 4-oxalocrotonate tautom 23.1 1.1E+02 0.0039 19.7 4.2 25 179-204 1-25 (62)
40 3m9w_A D-xylose-binding peripl 22.6 1.7E+02 0.0057 24.3 6.2 78 134-214 43-131 (313)
41 3l49_A ABC sugar (ribose) tran 21.9 1.3E+02 0.0044 24.5 5.3 23 191-213 108-132 (291)
42 3lac_A Pyrrolidone-carboxylate 21.8 3.5E+02 0.012 22.5 10.8 108 75-186 49-169 (215)
43 3hr4_A Nitric oxide synthase, 21.5 2.8E+02 0.0097 23.1 7.3 74 134-219 54-135 (219)
44 3giu_A Pyrrolidone-carboxylate 21.3 3.6E+02 0.012 22.4 11.9 111 72-186 47-170 (215)
45 3huu_A Transcription regulator 21.1 3.4E+02 0.012 22.2 7.9 76 134-214 68-152 (305)
46 1ykg_A SIR-FP, sulfite reducta 20.6 2.7E+02 0.0094 21.3 6.8 18 134-151 23-40 (167)
47 2dcl_A Hypothetical UPF0166 pr 20.5 1.9E+02 0.0065 22.2 5.6 77 134-213 24-102 (127)
48 3gbv_A Putative LACI-family tr 20.1 2.6E+02 0.0091 22.6 6.9 78 134-214 54-143 (304)
No 1
>2pw6_A Uncharacterized protein YGID; JW3007, escherichia coli structural genomics, protein structure, riken and PSI, protein structu initiative; 2.27A {Escherichia coli} SCOP: c.56.6.1
Probab=100.00 E-value=4.9e-58 Score=413.22 Aligned_cols=194 Identities=39% Similarity=0.765 Sum_probs=166.6
Q ss_pred cceEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecCCCCccCCCCCCCcccccccCC
Q 025580 51 VMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYP 130 (250)
Q Consensus 51 ~~p~~fisHGsP~l~~~~~~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~~~~~~~~Df~gFp~~~y~~~y~ 130 (250)
++|++|+|||||++.+++ +++.++|+++++++. +||+||||||||++..++|++++.++++|||+|||+++|+++|+
T Consensus 14 ~~P~~flsHGsP~~~~~~-~~~~~~l~~l~~~l~--~P~aIvviSaHw~~~~~~V~~~~~~~~i~Df~gfp~~ly~~~y~ 90 (271)
T 2pw6_A 14 RMPALFLGHGSPMNVLED-NLYTRSWQKLGMTLP--RPQAIVVVSAHWFTRGTGVTAMETPPTIHDFGGFPQALYDTHYP 90 (271)
T ss_dssp CCCEEEEECC-CCCCSSC-CHHHHHHHHHHHHSC--CCSEEEEEEEEEEESSEEEECCCC-------------CCSCCCC
T ss_pred cCCEEEECCCCCccCCCc-hHHHHHHHHHHHhCC--CCCEEEEEcCCCCCCceEEEeCCCCCCcCCcCcCCCcCcccccC
Confidence 689999999999999854 578899999999975 99999999999999999999988899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCCCHHHHHHHHHHhcccccCCeE
Q 025580 131 APGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVL 210 (250)
Q Consensus 131 ~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~~~~~~~~LG~aL~~l~derVl 210 (250)
++|+++||++|.+.|.++||+ +.. .++++|||+||||++|+|++|+||||||+|..+++++||+|||+|+++||+||+
T Consensus 91 ~~g~peLA~~i~~~l~~~g~~-~~~-~~~glDHG~~vPL~~m~p~adiPVVqlSi~~~~~p~~~~~lG~aL~~lrd~~Vl 168 (271)
T 2pw6_A 91 APGSPALAQRLVELLAPIPVT-LDK-EAWGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIM 168 (271)
T ss_dssp CCBCHHHHHHHHHHHTTSCEE-EES-SCCCCCHHHHHHHHHHSTTCCSCEEEEEEETTSCHHHHHHHHHHHGGGGGGTEE
T ss_pred CCCCHHHHHHHHHHHHhcCCc-ccc-cccCCCcchhhhHHHhcCCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCcE
Confidence 999999999999999999994 544 789999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCcccCcccccCC-CCCChhHHHHHHHHHHHHH-cC
Q 025580 211 IIGSGSATHNLRALQFES-SSISSWALEFDNWLKDALL-EG 249 (250)
Q Consensus 211 IIgSG~lSHnL~~~~~~~-~~~~~~a~eFD~~v~~~i~-~G 249 (250)
|||||++||||+..++.+ .+..+|+.|||+|++++++ +|
T Consensus 169 IigSG~lsHnL~~~~~~~~~~~~~~~~eFD~~~~~~l~~~g 209 (271)
T 2pw6_A 169 LVASGNVVHNLRTVKWHGDSSPYPWATSFNEYVKANLTWQG 209 (271)
T ss_dssp EEEEECSSCCTTSCCSSSCCCCCHHHHHHHHHHHTTTTCCS
T ss_pred EEEeCccccCCCcccccCcCCCCchHHHHHHHHHHHHHhcC
Confidence 999999999999988742 2456999999999999998 76
No 2
>3vsj_B 2-amino-5-chlorophenol 1,6-dioxygenase beta subun; CNBC,oxidoreductase, 2-His-1-carboxylate facial triad motif, extradiol dioxygenase,; HET: 2XP; 2.30A {Comamonas testosteroni} PDB: 3vsh_B 3vsi_B* 3vsg_B*
Probab=100.00 E-value=2.4e-42 Score=316.38 Aligned_cols=196 Identities=18% Similarity=0.208 Sum_probs=162.5
Q ss_pred cceEEEEcCCCCCCCC---------CC----ChhHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecC-CCCccCC
Q 025580 51 VMDTFFISHGSPTLSI---------DE----SLPARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQ-RNDTIHD 116 (250)
Q Consensus 51 ~~p~~fisHGsP~l~~---------~~----~~~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~~-~~~~~~D 116 (250)
+.-.+++|| ||.++ ++ .+++.++|+++++++.+.+||+||||||||++....+.+.. .....+|
T Consensus 5 iv~a~~~~H--~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~PdaIvviS~Hw~~~~~~~~~~~~~~~~~~~ 82 (312)
T 3vsj_B 5 IIAGFLAPH--PPHLVYGENPPQNEPRSQGGWEVLRWAYERARERLDAMKPDVLLVHSPHWITSVGHHFLGVPELSGKSV 82 (312)
T ss_dssp EEEEEECCC--CTHHHHTTCCTTBCSCCSCCCHHHHHHHHHHHHHHHHHCCSEEEEEEEEEEESSSEEEECCSEEEEEEE
T ss_pred EEEEEECCC--CCeecccccccccCcccchhHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCccCCeEEeccCCCCcccc
Confidence 456778899 55433 11 14678899999999988899999999999999887665532 2234667
Q ss_pred CCCCCcccccccCCCCCCHHHHHHHHHHHHhCCCCcccc--cCCCCcccchhhhhhhhcCCCCCCEEEeecCC---CCCH
Q 025580 117 FYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNE--DRKRGLDHGAWVPLMLMYPEADIPVCQLSVQM---HHTG 191 (250)
Q Consensus 117 f~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~--~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~---~~~~ 191 (250)
+++||+ .|+++|+++||++||++|.+.+.+.|++ +.. +.++++|||+||||.||+|+.++||||||++. ..++
T Consensus 83 ~~~f~~-f~~~~y~~~gd~eLA~~i~~~l~~~g~~-~~~~~~~~~~lDHG~~vpL~~l~p~~~~pVVpis~~~~p~~~~~ 160 (312)
T 3vsj_B 83 DPIFPN-VFRYDFSLNVDVELAEACAEEGRKAGLV-TKMMRNPKFRVDYGTITTLHLIRPQWDIPVVGISANNSPYYLNT 160 (312)
T ss_dssp CSSCTT-TCEEEEEEEBCHHHHHHHHHHHHHTTCC-EEEECCTTCCCCHHHHHHHHHHCTTCCSCEEEEEEESHHHHTCH
T ss_pred ccCCCc-cCcccCCCCCCHHHHHHHHHHHHHcCCc-eeeccCccccCCcchHhHHHHhCCCCCCCEEEEeecCCCCCCCh
Confidence 777764 4689999999999999999999999995 543 67899999999999999999999999999985 4888
Q ss_pred H----HHHHHHHHhccc---ccCCeEEEEecCCcccCcccccC---C----CCCChhHHHHHHHHHHHHHcCC
Q 025580 192 T----YHYNIGKALAPL---KEEGVLIIGSGSATHNLRALQFE---S----SSISSWALEFDNWLKDALLEGR 250 (250)
Q Consensus 192 ~----~~~~LG~aL~~l---~derVlIIgSG~lSHnL~~~~~~---~----~~~~~~a~eFD~~v~~~i~~Gd 250 (250)
+ +||+||++|+++ +|+||+|||||++|||++..++. . .++.+|+++||+|++++|++||
T Consensus 161 ~~~~~~~~~lG~aL~~~~~~~d~~Vlii~SG~lsH~l~~~~~~~~~~~~~~~~~~~~a~~fD~~~~~~l~~gD 233 (312)
T 3vsj_B 161 KEGMSEMDVLGKATREAIRKTGRKAVLLASNTLSHWHFHEEPTIPEDMSKEYPATMAGYQWDIRMIELMRQGK 233 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCSCCCCCCSCCSSTTCGGGCCCSCHHHHHHHHHHHHHHHHTC
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCEEEEEECcccccCCcccccccccccccCCCCHHHHHHHHHHHHHHHcCC
Confidence 8 999999999997 37999999999999999865431 1 2356899999999999999987
No 3
>3vsj_A 2-amino-5-chlorophenol 1,6-dioxygenase alpha SUBU; CNBC,oxidoreductase, 2-His-1-carboxylate facial triad motif, extradiol dioxygenase,; HET: 2XP; 2.30A {Comamonas testosteroni} PDB: 3vsh_A 3vsi_A* 3vsg_A*
Probab=100.00 E-value=2e-41 Score=303.62 Aligned_cols=196 Identities=16% Similarity=0.205 Sum_probs=166.3
Q ss_pred cceEEEEcCCCCC--CCCCCCh---hHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecC-CCCccCCCCCCCccc
Q 025580 51 VMDTFFISHGSPT--LSIDESL---PARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSVNVVQ-RNDTIHDFYGFPKQM 124 (250)
Q Consensus 51 ~~p~~fisHGsP~--l~~~~~~---~~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~~-~~~~~~Df~gFp~~~ 124 (250)
+.-++++|| || +++++.. +++++++++++++.+.+||+||||||||.+....++++. .....+++++|+ .+
T Consensus 3 iv~a~~~pH--~P~~~l~pe~~~~~~~~~a~~~~~~~l~~~~Pd~ivvis~h~~~~~~~~~i~~~~~~~~~~~~~f~-~~ 79 (271)
T 3vsj_A 3 VVSAFLVPG--TPLPQLKPEVPSWGQLAAATERAGKALAASRPDVVLVYSTQWLAVLDQQWLTRPRSEGVHVDENWY-EF 79 (271)
T ss_dssp EEEEEEECC--CSHHHHCTTSHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEEESSSEEEECCSEEEEEECCTTTG-GG
T ss_pred eEEEEEcCC--CCccCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEEEcCCcccccCcEEEeccCCCcccccCCch-hh
Confidence 456789999 66 6666653 566889999999988999999999999999888776643 234567788887 57
Q ss_pred ccccCCCCCCHHHHHHHHHHHHhCCCCccc--ccCCCCcccchhhhhhhhcCCCC-CCEEEeecCCCCCHHHHHHHHHHh
Q 025580 125 YDLKYPAPGAPELAKRVKDLLKASGIKHVN--EDRKRGLDHGAWVPLMLMYPEAD-IPVCQLSVQMHHTGTYHYNIGKAL 201 (250)
Q Consensus 125 y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~--~~~~~~lDHG~~vPL~~l~p~~d-iPVV~vS~~~~~~~~~~~~LG~aL 201 (250)
++++|+++||++||++|.+.+.+.|++ +. .+.++++|||+||||.||+|+.+ +||||+|++...++++||+||++|
T Consensus 80 g~~~y~~~gd~~la~~i~~~~~~~g~~-~~~~~~~~~~lDHg~~vpl~~l~~~~~~~pvv~i~~~~~~~~~~~~~lG~al 158 (271)
T 3vsj_A 80 GDLAYDIRADTALAEACVTSSPLHGVH-ARGVNYDGFPIDTGTITACTLMGIGTDAFPLVVGSNNLYHSGEITEKLAALA 158 (271)
T ss_dssp CCEEEEEEBCHHHHHHHHHHHHHTTCC-EEEECCTTCCCCHHHHHHHHHHTCSSSSSCEEEEEEETTCCHHHHHHHHHHH
T ss_pred ccccccCcCCHHHHHHHHHHHHHCCCc-EEeecCCCCCcchhHHHHHHHHhccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 799999999999999999999999995 53 35789999999999999999976 999999998899999999999999
Q ss_pred ccc---ccCCeEEEEecCCcccCcccccC---CCCCChhHHHHHHHHHHHHHcCC
Q 025580 202 APL---KEEGVLIIGSGSATHNLRALQFE---SSSISSWALEFDNWLKDALLEGR 250 (250)
Q Consensus 202 ~~l---~derVlIIgSG~lSHnL~~~~~~---~~~~~~~a~eFD~~v~~~i~~Gd 250 (250)
+++ +++||+|||||++|||+....+. ..++.+|+++||+|+.++|++||
T Consensus 159 ~~~~~~~~~~vlii~SGdlsH~l~~~~~~~~~~~~~~~~a~~fD~~~~~~l~~~D 213 (271)
T 3vsj_A 159 VDCAKDQNKRVAVVGVGGLSGSLFREEIDPREDRIANEEDDKWNRRVLKLIEAGD 213 (271)
T ss_dssp HHHHHHTTCCEEEEEECCSCCCCCSSCCCGGGCCCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCEEEEEECccccCCcccCCCCCCCCCCCcchHHHHHHHHHHHHCCC
Confidence 997 37999999999999999644331 12346899999999999999987
No 4
>1b4u_B LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: c.56.6.1 PDB: 1bou_B
Probab=100.00 E-value=9.2e-40 Score=297.90 Aligned_cols=188 Identities=18% Similarity=0.228 Sum_probs=153.5
Q ss_pred ccccceEEEEcCCCCCCCCC-------CC---hhHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCC--C-----CeEEec
Q 025580 48 RLSVMDTFFISHGSPTLSID-------ES---LPARGFLQAWQAKVFS--QRPNSILVISAHWDTD--F-----PSVNVV 108 (250)
Q Consensus 48 ~~~~~p~~fisHGsP~l~~~-------~~---~~~~~~l~~l~~~l~~--~~PdaIVviS~Hw~~~--~-----~~I~~~ 108 (250)
|.++.-.+++|| ||+++. ++ .++.++++++++++++ .+||+||||||||.+. . ++|+..
T Consensus 1 M~~Iv~~~~~sH--~P~i~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~~~~~Pd~Ivvis~~H~~~~~~~~~~~~~I~~~ 78 (302)
T 1b4u_B 1 MARVTTGITSSH--IPALGAAIQTGTSDNDYWGPVFKGYQPIRDWIKQPGNMPDVVILVYNDHASAFDMNIIPTFAIGCA 78 (302)
T ss_dssp -CEEEEEEEECC--CHHHHHHHHHTCTTSTTTHHHHHHHHHHHHHHTSTTTSCSEEEEEECCCSSSCCTTEEESBEEECS
T ss_pred ChHHhEEeECCC--CCcccCccccCCcchhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCcccccccccCCceEEecC
Confidence 555677889999 444431 11 3677889999999987 8999999999955432 2 456666
Q ss_pred CCCCccCCCCCCCcccccccC-CCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCC---CCEEEee
Q 025580 109 QRNDTIHDFYGFPKQMYDLKY-PAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEAD---IPVCQLS 184 (250)
Q Consensus 109 ~~~~~~~Df~gFp~~~y~~~y-~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~d---iPVV~vS 184 (250)
+.++ +|||.++|. +| +++||++||++|.+.+.+.|++ +..+.++++|||+||||.||+|+.| +||||||
T Consensus 79 ~~~~-~~d~~~G~~-----~~~~~~G~peLA~~i~~~l~~~g~~-~~~~~~~~lDHG~~vpL~~l~p~~d~~~ipVVpis 151 (302)
T 1b4u_B 79 ETFK-PADEGWGPR-----PVPDVKGHPDLAWHIAQSLILDEFD-MTIMNQMDVDHGCTVPLSMIFGEPEEWPCKVIPFP 151 (302)
T ss_dssp SEEC-BCBCSSSBC-----SSCCEECCHHHHHHHHHHHHHTTCC-CEEESSCCBCHHHHHHHHHHHCSCSSCSSEEEEEE
T ss_pred CCCc-cCcccCCCc-----CCCCCCCCHHHHHHHHHHHHhcCCC-eeccCCcCCCceeeehHHHhcCcccCCcCcEEEEe
Confidence 6566 799865553 57 8999999999999999999995 6656779999999999999999987 9999999
Q ss_pred cCCCCC----HHHHHHHHHHhccc-----ccCCeEEEEecCCcccCcccccCCCCCChhHHHHHHHHHHHHHcCC
Q 025580 185 VQMHHT----GTYHYNIGKALAPL-----KEEGVLIIGSGSATHNLRALQFESSSISSWALEFDNWLKDALLEGR 250 (250)
Q Consensus 185 ~~~~~~----~~~~~~LG~aL~~l-----~derVlIIgSG~lSHnL~~~~~~~~~~~~~a~eFD~~v~~~i~~Gd 250 (250)
+|...+ +++||+||++|+++ +|+||+|||||++|||+...+. ..|+++||+|++++| +||
T Consensus 152 v~~~~~p~~~~~~~~~lG~aL~~~~~~~~~d~~VlIIgSG~lSH~l~~~~~-----g~~~~~fD~~~~~~l-~~d 220 (302)
T 1b4u_B 152 VNVVTYPPPSGKRCFALGDSIRAAVESFPEDLNVHVWGTGGMSHQLQGPRA-----GLINKEFDLNFIDKL-ISD 220 (302)
T ss_dssp BCCSSSCCCCHHHHHHHHHHHHHHHHTSSSCCEEEEEEECCSSCCCSSTTT-----TBCCHHHHHHHHHHH-HHC
T ss_pred ecCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCccccCCCCCcC-----ccchHHHHHHHHHHH-ccC
Confidence 987664 69999999999987 5789999999999999986543 258899999999999 765
No 5
>3bcz_A Protein MEMO1; alpha/beta structure, peptide binding protein; 2.10A {Homo sapiens} PDB: 3bd0_A
Probab=99.54 E-value=9.8e-15 Score=132.11 Aligned_cols=169 Identities=11% Similarity=0.005 Sum_probs=112.6
Q ss_pred EEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCCCEEEEEeC-CCCCCCCeEEecCCCCccCCCCCCCcccccccCCCC
Q 025580 54 TFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRPNSILVISA-HWDTDFPSVNVVQRNDTIHDFYGFPKQMYDLKYPAP 132 (250)
Q Consensus 54 ~~fisHGsP~l~~~~~~~~~~~l~~l~~~l~~~~PdaIVviS~-Hw~~~~~~I~~~~~~~~~~Df~gFp~~~y~~~y~~~ 132 (250)
++.++|.+..... .-+..+++. +...+||.|||++| |+.... .+.+.... +|.. |- . +.+
T Consensus 40 ~iI~PHAGy~ysG---~~aa~ay~~----l~~~~p~~VvilGP~H~~~~~-~~a~~~~~----~~~T-Pl--G----~l~ 100 (293)
T 3bcz_A 40 AIIAPHAGYTYCG---SCAAHAYKQ----VDPSITRRIFILGPSHHVPLS-RCALSSVD----IYRT-PL--Y----DLR 100 (293)
T ss_dssp EEEECCSCHHHHH---HHHHHHHTT----CCTTTCCEEEEEEECSSSCCS-SEEECSCS----EECC-SS--C----CEE
T ss_pred EEEECCCCccccH---HHHHHHHHH----hccCCCCEEEEECCCCCCCCC-ceEEccCC----ceEC-CC--c----cCC
Confidence 6888995522111 011122333 23468999999999 766553 44443221 1211 22 1 345
Q ss_pred CCHHHHHHHHHHHHhCCCCccccc-CCCCcccchhhhhhhhcCC-----CCCCEEEeecCCCCCHHHHHHHHHHhcccc-
Q 025580 133 GAPELAKRVKDLLKASGIKHVNED-RKRGLDHGAWVPLMLMYPE-----ADIPVCQLSVQMHHTGTYHYNIGKALAPLK- 205 (250)
Q Consensus 133 G~~~LA~~i~~~l~~~Gid~~~~~-~~~~lDHG~~vPL~~l~p~-----~diPVV~vS~~~~~~~~~~~~LG~aL~~l~- 205 (250)
.|.+++++|.+.. .+ ...+ .....+|++-|+|-|+..- .++|||||.++ ..+++++++||++|+++.
T Consensus 101 vD~el~~~L~~~~---~~--~~~d~~~~~~EHSlEv~LPfL~~~~~~~~~~~~IVPI~vg-~~~~~~~~~~g~~l~~~~~ 174 (293)
T 3bcz_A 101 IDQKIYGELWKTG---MF--ERMSLQTDEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVG-ALSESKEQEFGKLFSKYLA 174 (293)
T ss_dssp BCHHHHHHHHHTS---CE--EECCHHHHHHCCTTGGGHHHHHHHTGGGTTSCEEEEEEEC-CCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhcC---Cc--ccccccccchheEEEeeHHHHHHHhCCCCCCceEEEEEcC-CCCHHHHHHHHHHHHHHHh
Confidence 5999998886542 22 1122 2345689999999887532 37999999995 689999999999999974
Q ss_pred cCCeEEEEecCCcccCcccccCCCC--------CChhHHHHHHHHHHHHHcCC
Q 025580 206 EEGVLIIGSGSATHNLRALQFESSS--------ISSWALEFDNWLKDALLEGR 250 (250)
Q Consensus 206 derVlIIgSG~lSHnL~~~~~~~~~--------~~~~a~eFD~~v~~~i~~Gd 250 (250)
+.+++||+|||+||+-. ++|+. ..+++++||+.++++|+++|
T Consensus 175 ~~~~l~V~SsDlsH~g~---~fgy~~~~~~~~~~~~~~~~~D~~~i~~i~~~d 224 (293)
T 3bcz_A 175 DPSNLFVVSSDFCHWGQ---RFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLD 224 (293)
T ss_dssp CTTEEEEEECCCCEEBG---GGTBCCCCGGGCSHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEeCCccCCCC---CCCCCccccccchhHHHHHHHHHHHHHHHHcCC
Confidence 45999999999999822 22322 12668999999999999987
No 6
>1yqe_A Hypothetical UPF0204 protein AF0625; AF0625,sulfur SAD, structural genomics, PSI, protein structure initiative; 1.83A {Archaeoglobus fulgidus} SCOP: c.56.7.1
Probab=60.81 E-value=82 Score=27.76 Aligned_cols=111 Identities=18% Similarity=0.178 Sum_probs=71.5
Q ss_pred CCCEEEEEeCCCC-CCCCeEEec--CCCCccCCCCCCCcccccccCCCCCCHHHHHHHHHHHHhC-----CCCcccccCC
Q 025580 87 RPNSILVISAHWD-TDFPSVNVV--QRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKAS-----GIKHVNEDRK 158 (250)
Q Consensus 87 ~PdaIVviS~Hw~-~~~~~I~~~--~~~~~~~Df~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~-----Gid~~~~~~~ 158 (250)
.+|.||++|=|-- ...+.+++- .+. ...+|+|-|.+ -++-+|.+...+.+.+++. +++ +...-
T Consensus 70 g~d~iIflSRH~s~~~~p~LTvH~tGN~-~~a~~GG~p~~------la~a~P~~~~~~L~~l~~~~~~~~~fe-v~~EA- 140 (282)
T 1yqe_A 70 DFEEILFASRHSSKDGRKIFTVHVSGNV-GTADFGGKPYS------LAKPSPQTMKNYVLALRERLDRKPEFE-FTMEV- 140 (282)
T ss_dssp CCSEEEEEEEEECTTCCCEEEEECCBCS-SCCTTSSCTTC------BCCBCHHHHHHHHHHHHTTGGGSTTCE-EEECC-
T ss_pred CCCEEEEEeccccCCCCceEEEeCCCCC-CccccCCCCCc------cccCCHHHHHHHHHHHHHHhccCCCcE-EEEEc-
Confidence 4799999999965 445666653 223 36678888886 4677999988888888664 332 32221
Q ss_pred CCcccchhhhhhhhcCC-CCCCEEEeecCCCC----CHHHHHHHHHHhccccc----CCeEEEEecCC
Q 025580 159 RGLDHGAWVPLMLMYPE-ADIPVCQLSVQMHH----TGTYHYNIGKALAPLKE----EGVLIIGSGSA 217 (250)
Q Consensus 159 ~~lDHG~~vPL~~l~p~-~diPVV~vS~~~~~----~~~~~~~LG~aL~~l~d----erVlIIgSG~l 217 (250)
-.|| |. .++|.+=|=+-+.. +++.+-.+.+++-++.+ +...+||-||.
T Consensus 141 --THHG---------Pt~~~~Ps~FVEIGSte~eW~d~~a~~~vA~av~~~l~~~~~~~~~~ig~GGg 197 (282)
T 1yqe_A 141 --THHG---------PSEISKPSAFYEIGSTEEEWKDREAAEVVAEAMLDAIRAEKMDWNVAVGVGGT 197 (282)
T ss_dssp --SCSS---------CCCCCSCEEEEEEEESHHHHTCHHHHHHHHHHHHHHHHCCCCCCEEEEEECSC
T ss_pred --cccC---------CCCCCCCcEEEEeCCCHHHhCChHHHHHHHHHHHHHhccccccCCEEEEeCCC
Confidence 1355 34 67888777763332 45666666666555532 44678888874
No 7
>2gfq_A UPF0204 protein PH0006; structural genomics, PSI, Pro structure initiative, midwest center for structural genomic unknown function; 1.75A {Pyrococcus horikoshii} SCOP: c.56.7.1
Probab=58.41 E-value=36 Score=30.33 Aligned_cols=113 Identities=16% Similarity=0.180 Sum_probs=71.6
Q ss_pred cCCCCEEEEEeCCCC-CCCCeEEec--CCCCccCCCCCCCcccccccCCCCCCHHHHHHHHHHHHhC---CCCcccccCC
Q 025580 85 SQRPNSILVISAHWD-TDFPSVNVV--QRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKAS---GIKHVNEDRK 158 (250)
Q Consensus 85 ~~~PdaIVviS~Hw~-~~~~~I~~~--~~~~~~~Df~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~---Gid~~~~~~~ 158 (250)
-.++|.||++|=|-- ...+.+++- .+. ...+|+|-|.+ -++-+|.+...+.+.+++. +++ +...-
T Consensus 90 g~~~d~iIflSRH~s~~~~p~LTvH~tGN~-g~a~~GG~p~~------la~a~P~~~~~lLr~l~~~~~~~fe-vt~EA- 160 (298)
T 2gfq_A 90 GFKPEIIAFASRHSSKQKLPALTTHVTGNW-GKAMYGGKDES------FAVAIPSAMKLSLLKMSELNDLGWT-VCYEA- 160 (298)
T ss_dssp SCCCSEEEEEEEEECSSCCCEEEEECCEES-SCCSSSSCTTE------ECBBCHHHHHHHHHHHHHHCCSCCE-EEECC-
T ss_pred cCCCcEEEEEeccccCCCCceEEEeCCCCC-CccccCCCCCc------cccCCHHHHHHHHHHHHHhcCCCCE-EEEec-
Confidence 356999999999965 445666553 222 35678888886 4667888888887777654 442 33222
Q ss_pred CCcccchhhhhhhhcCC-CCCCEEEeecCCCC----CHHHHHHHHHHhccccc-------CCeEEEEecCC
Q 025580 159 RGLDHGAWVPLMLMYPE-ADIPVCQLSVQMHH----TGTYHYNIGKALAPLKE-------EGVLIIGSGSA 217 (250)
Q Consensus 159 ~~lDHG~~vPL~~l~p~-~diPVV~vS~~~~~----~~~~~~~LG~aL~~l~d-------erVlIIgSG~l 217 (250)
--|| |. .++|.+=|=+-+.. +++.+-.+.+++-++.+ +...+||-||.
T Consensus 161 --THHG---------Pt~l~~Ps~FVEIGSte~eW~d~~A~~~vA~av~~~l~~~~~~~~~~~~~iG~GGg 220 (298)
T 2gfq_A 161 --THHG---------PTELEVPSFFIEIGSSEEEWINDRAGEIIAETIIYVLDNYEKGRSKFKVALGIGGG 220 (298)
T ss_dssp --SCSS---------CCCCCSBEEEEEEEESHHHHTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECSC
T ss_pred --cccC---------CCCCCCCcEEEEeCCCHHHhCChHHHHHHHHHHHHHhccchhcccCCCEEEEeCCC
Confidence 1355 34 67888777763332 45666666666555532 45678888874
No 8
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=52.88 E-value=14 Score=30.41 Aligned_cols=68 Identities=15% Similarity=0.186 Sum_probs=45.7
Q ss_pred HHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCCCHHHHHHHHHHhccccc--CCeEEEEec
Q 025580 138 AKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKE--EGVLIIGSG 215 (250)
Q Consensus 138 A~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~~~~~~~~LG~aL~~l~d--erVlIIgSG 215 (250)
+-.+++.+ +.|.| +-. +|| |+. .++....++|||.|.+. .|++=++|.++++ .+|+|||.+
T Consensus 41 ~v~~a~~~-~~~~d-VII--SRG---gta---~~lr~~~~iPVV~I~~s-------~~Dil~al~~a~~~~~kIavvg~~ 103 (196)
T 2q5c_A 41 ASKIAFGL-QDEVD-AII--SRG---ATS---DYIKKSVSIPSISIKVT-------RFDTMRAVYNAKRFGNELALIAYK 103 (196)
T ss_dssp HHHHHHHH-TTTCS-EEE--EEH---HHH---HHHHTTCSSCEEEECCC-------HHHHHHHHHHHGGGCSEEEEEEES
T ss_pred HHHHHHHh-cCCCe-EEE--ECC---hHH---HHHHHhCCCCEEEEcCC-------HhHHHHHHHHHHhhCCcEEEEeCc
Confidence 44455556 67775 332 233 222 22444568999999985 5888888888864 789999999
Q ss_pred CCcccCc
Q 025580 216 SATHNLR 222 (250)
Q Consensus 216 ~lSHnL~ 222 (250)
+....+.
T Consensus 104 ~~~~~~~ 110 (196)
T 2q5c_A 104 HSIVDKH 110 (196)
T ss_dssp SCSSCHH
T ss_pred chhhHHH
Confidence 9877654
No 9
>2odf_A AGR_C_3887P, hypothetical protein ATU2144; structural genomics, unknown FUNC PSI-2, MCSG, protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.56.5.9
Probab=47.83 E-value=15 Score=31.94 Aligned_cols=69 Identities=13% Similarity=0.153 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCcccc-hhhhhhhhcCCCCCCEEEeecCCC--CCHHHHHHHHHHhccc
Q 025580 134 APELAKRVKDLLKASGIKHVNEDRKRGLDHG-AWVPLMLMYPEADIPVCQLSVQMH--HTGTYHYNIGKALAPL 204 (250)
Q Consensus 134 ~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG-~~vPL~~l~p~~diPVV~vS~~~~--~~~~~~~~LG~aL~~l 204 (250)
++++++.+.+.|++.|+ .+..+..+.-.++ .++-=++-.| ..++.|||-++.. ++.+...+..+.|+++
T Consensus 176 ~~~l~~~~~~~l~~~g~-~v~~N~Py~G~~~~~~~~~~~g~~-~g~~avqiEi~~~lymde~~~~~~a~~l~~~ 247 (257)
T 2odf_A 176 DSRLADAMLAGAEGASL-TVRRNDPYGPEDGVTHTLRLHALP-DGLLNVMIEIRNDLIANEGEQAAIAGFLHEL 247 (257)
T ss_dssp CCHHHHHHHHHTTTCSS-CEEETCSCCGGGTTTHHHHHHTGG-GTCEEEEEEEEGGGGSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCC-EEEeCCCCcCCCCCCeeeHhhcCc-CCceEEEEEEehhhhcCCcchhHHHHHHHHH
Confidence 78999999999998888 4665554432333 2222233334 7899999999654 3555555555555543
No 10
>3lyh_A Cobalamin (vitamin B12) biosynthesis CBIX protein; structural genomics, joint center for structural genomics, protein structure initiative; HET: MSE; 1.60A {Marinobacter aquaeolei}
Probab=47.72 E-value=21 Score=26.80 Aligned_cols=32 Identities=9% Similarity=0.110 Sum_probs=19.6
Q ss_pred ccccceEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhc
Q 025580 48 RLSVMDTFFISHGSPTLSIDESLPARGFLQAWQAKVFS 85 (250)
Q Consensus 48 ~~~~~p~~fisHGsP~l~~~~~~~~~~~l~~l~~~l~~ 85 (250)
|+....+++++|||. . ..+.+.++.+.+.+++
T Consensus 2 m~~~~alllv~HGS~-----~-~~~~~~~~~l~~~l~~ 33 (126)
T 3lyh_A 2 MTQPHQIILLAHGSS-----D-ARWCETFEKLAEPTVE 33 (126)
T ss_dssp ---CEEEEEEECCCS-----C-HHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCC-----C-HHHHHHHHHHHHHHHh
Confidence 443456899999993 2 3355567777776654
No 11
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=47.28 E-value=25 Score=29.86 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=35.1
Q ss_pred hcCCCCCCEEEeecCCCCCHHHHHHHHHHhccccc--CCeEEEEecCCcccCc
Q 025580 172 MYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKE--EGVLIIGSGSATHNLR 222 (250)
Q Consensus 172 l~p~~diPVV~vS~~~~~~~~~~~~LG~aL~~l~d--erVlIIgSG~lSHnL~ 222 (250)
+....++|||.|.+. .|++=++|.++++ .+|+|||.+.....+.
T Consensus 77 Lr~~~~iPVV~I~vs-------~~Dil~aL~~a~~~~~kIavVg~~~~~~~~~ 122 (225)
T 2pju_A 77 LKSRLSVPVILIKPS-------GYDVLQFLAKAGKLTSSIGVVTYQETIPALV 122 (225)
T ss_dssp HHTTCSSCEEEECCC-------HHHHHHHHHHTTCTTSCEEEEEESSCCHHHH
T ss_pred HHhhCCCCEEEecCC-------HHHHHHHHHHHHhhCCcEEEEeCchhhhHHH
Confidence 444468999999985 5888899998865 7899999999876553
No 12
>2xws_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; 1.60A {Archaeoglobus fulgidus} PDB: 2dj5_A* 2xwq_A
Probab=45.76 E-value=23 Score=26.52 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCC
Q 025580 52 MDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRP 88 (250)
Q Consensus 52 ~p~~fisHGsP~l~~~~~~~~~~~l~~l~~~l~~~~P 88 (250)
..+++++|||. +..+.+.++++.+.+++..|
T Consensus 4 ~alllv~HGS~------~~~~~~~~~~la~~l~~~~~ 34 (133)
T 2xws_A 4 RGLVIVGHGSQ------LNHYREVMELHRKRIEESGA 34 (133)
T ss_dssp EEEEEEECSCC------CHHHHHHHHHHHHHHHHHTS
T ss_pred ceEEEEECCCC------CHHHHHHHHHHHHHHHhhCC
Confidence 46899999993 23455567788777765434
No 13
>1tjn_A Sirohydrochlorin cobaltochelatase; AF0721, APC5049, midwest consortium for structural genomics, structure initiative, A. fulgidus; 2.01A {Archaeoglobus fulgidus} SCOP: c.92.1.3
Probab=41.22 E-value=29 Score=27.32 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCCCCCCCChhHHHHHHHHHHHhhcCCC
Q 025580 52 MDTFFISHGSPTLSIDESLPARGFLQAWQAKVFSQRP 88 (250)
Q Consensus 52 ~p~~fisHGsP~l~~~~~~~~~~~l~~l~~~l~~~~P 88 (250)
..+++++|||. . ..+.+.++++.+.+++..|
T Consensus 25 ~avlLv~HGS~-----~-p~~~~~~~~la~~l~~~~~ 55 (156)
T 1tjn_A 25 RGLVIVGHGSQ-----L-NHYREVMELHRKRIEESGA 55 (156)
T ss_dssp EEEEEEECCTT-----S-TTHHHHHHHHHHHHHHHTS
T ss_pred cCEEEEECCCC-----C-HHHHHHHHHHHHHHHhhCC
Confidence 57899999993 2 2355567777777765444
No 14
>2q7s_A N-formylglutamate amidohydrolase; YP_297560.1, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE; 2.00A {Ralstonia eutropha} SCOP: c.56.5.9
Probab=39.69 E-value=18 Score=32.03 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=46.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCC--C------HHHHHHHHHHh
Q 025580 130 PAPGAPELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHH--T------GTYHYNIGKAL 201 (250)
Q Consensus 130 ~~~G~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~--~------~~~~~~LG~aL 201 (250)
....+++|++.+.+.|.+.|+ .+..+..+. |.++-=++=.|...++.|||-++..+ + ....-+|.+.|
T Consensus 200 g~s~~~~l~~~~~~~l~~~g~-~v~~N~Py~---Gg~it~~yg~P~~g~~aiqiEi~~~lymde~~~~~~~~~~~l~~~L 275 (290)
T 2q7s_A 200 GTTCEPGLVDLVERELREKGY-TVARNDPYK---GVQLIAQIGRPAERRNSLQIEIRRPLYMEEGTRERNEGFATLQRDL 275 (290)
T ss_dssp TTSSCHHHHHHHHHHHHHTTC-CEEESSSCC---C-CHHHHHCBGGGTEEEEEEEEEGGGTEETTTTEECTHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHhhcCC-EEEeCCCcC---cchhHHhhCCCCCCcEEEEEEEchhhhcCCCcccCchHHHHHHHHH
Confidence 334589999999999999998 466554443 45554455557788999999996432 1 23444555555
Q ss_pred ccc
Q 025580 202 APL 204 (250)
Q Consensus 202 ~~l 204 (250)
+.+
T Consensus 276 ~~~ 278 (290)
T 2q7s_A 276 TLL 278 (290)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 15
>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} SCOP: c.56.4.1 PDB: 3rnz_A* 1aug_A
Probab=39.12 E-value=1.7e+02 Score=24.69 Aligned_cols=96 Identities=16% Similarity=0.108 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeE---EecCCCCccCCCCCCCccccccc------CCCCCCHHHHHHHHHH
Q 025580 74 GFLQAWQAKVFSQRPNSILVISAHWDTDFPSV---NVVQRNDTIHDFYGFPKQMYDLK------YPAPGAPELAKRVKDL 144 (250)
Q Consensus 74 ~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I---~~~~~~~~~~Df~gFp~~~y~~~------y~~~G~~~LA~~i~~~ 144 (250)
+..+.+.+.+.+.+||.||.++-+.-....++ +.+...-.+-|-.|+-+..-.+. |...-+ .+++.+.
T Consensus 49 ~~~~~l~~~i~~~~Pd~VihvG~aggr~~i~lEr~A~N~~d~ripDn~G~~P~d~~i~~~Gp~a~~stLp---v~~~v~~ 125 (223)
T 3ro0_A 49 KSLAVLREAMKKHQPDIIICVGQAGGRMQITPERVAINLNEARIPDNEGNQPVGEDISQGGPAAYWTGLP---IKRIVEE 125 (223)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEEECTTCCSBEEBSEEESCBCCSSCCTTSCCCCSBCSSTTSCSEEECCSC---HHHHHHH
T ss_pred hHHHHHHHHHHHhCCCEEEEeccCCCCceEEEEEEEecCCCCCCCCCCCCCCCCCCCcCCCCceeecCCC---HHHHHHH
Confidence 34555555566779999999998766554433 22211112344444411111110 111112 3678888
Q ss_pred HHhCCCCcccccCCCC---cccchhhhhhhhc
Q 025580 145 LKASGIKHVNEDRKRG---LDHGAWVPLMLMY 173 (250)
Q Consensus 145 l~~~Gid~~~~~~~~~---lDHG~~vPL~~l~ 173 (250)
++++|+ ++..+.+-| =+|=.+.-|++..
T Consensus 126 l~~~gi-pa~vS~dAG~yvCN~iyY~sL~~~~ 156 (223)
T 3ro0_A 126 IKKEGI-PAAVSYTAGTFVCNHLFYGLMDEIS 156 (223)
T ss_dssp HHHTTC-CBCCBSCCCSSHHHHHHHHHHHHHH
T ss_pred HHHCCC-CEEEeCCCCcccchHHHHHHHHHHH
Confidence 899999 466554333 2555555566543
No 16
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=36.85 E-value=18 Score=29.76 Aligned_cols=55 Identities=20% Similarity=0.250 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCCCHHHHHHHHHHhccc-ccCCeEEEEe
Q 025580 136 ELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPL-KEEGVLIIGS 214 (250)
Q Consensus 136 ~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~~~~~~~~LG~aL~~l-~derVlIIgS 214 (250)
+|-+.|.+.|++.|++ + .|.|+... ...|+ |.-..++++++.+= .|++|+|-||
T Consensus 34 ~lK~~i~~~L~~~G~e-V-------~D~G~~~~-----~~~dY------------Pd~a~~va~~V~~g~~d~GIliCGT 88 (166)
T 3s5p_A 34 DLRMFLQQRASAHGYE-V-------MDLGTESD-----ASVDY------------PDFAKIGCEAVTSGRADCCILVCGT 88 (166)
T ss_dssp HHHHHHHHHHHHTTCE-E-------EEEEC-------------------------CHHHHHHHHHHHTTSCSEEEEEESS
T ss_pred HHHHHHHHHHHHCCCE-E-------EEcCCCCC-----CCCCH------------HHHHHHHHHHHHcCCCcEEEEEcCC
Confidence 4678888999988883 4 46665221 00111 24456777777664 3688999999
Q ss_pred c
Q 025580 215 G 215 (250)
Q Consensus 215 G 215 (250)
|
T Consensus 89 G 89 (166)
T 3s5p_A 89 G 89 (166)
T ss_dssp S
T ss_pred c
Confidence 9
No 17
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=36.58 E-value=42 Score=26.92 Aligned_cols=54 Identities=24% Similarity=0.473 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCCC-HHHHHHHHHHhccc-ccCCeEEEE
Q 025580 136 ELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHT-GTYHYNIGKALAPL-KEEGVLIIG 213 (250)
Q Consensus 136 ~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~~-~~~~~~LG~aL~~l-~derVlIIg 213 (250)
+|-+.|.+.|++.|.+ + .|+|+... ...| |.-..++++++.+= .|++|+|-|
T Consensus 13 ~lK~~i~~~L~~~G~e-V-------~D~G~~~~------------------~~~dYpd~a~~va~~V~~g~~d~GIliCG 66 (149)
T 3he8_A 13 NLKREIADFLKKRGYE-V-------IDFGTHGN------------------ESVDYPDFGLKVAEAVKSGECDRGIVICG 66 (149)
T ss_dssp HHHHHHHHHHHHTTCE-E-------EECCCCSS------------------SCCCHHHHHHHHHHHHHTTSSSEEEEEES
T ss_pred HHHHHHHHHHHHCCCE-E-------EEcCCCCC------------------CCCCHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 5778899999988883 4 36666310 1123 45567778877764 368899999
Q ss_pred ec
Q 025580 214 SG 215 (250)
Q Consensus 214 SG 215 (250)
||
T Consensus 67 TG 68 (149)
T 3he8_A 67 TG 68 (149)
T ss_dssp SS
T ss_pred Cc
Confidence 99
No 18
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=35.56 E-value=79 Score=30.57 Aligned_cols=81 Identities=19% Similarity=0.157 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCC-CCCCEEEeecCC--CCCHHHHHHHHHHhc----cccc
Q 025580 134 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPE-ADIPVCQLSVQM--HHTGTYHYNIGKALA----PLKE 206 (250)
Q Consensus 134 ~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~-~diPVV~vS~~~--~~~~~~~~~LG~aL~----~l~d 206 (250)
..++|++|.+.+.+.|++ +....--..|-.-...+ +. ..-.+|-++-.. +..+.....|=+.|. .+..
T Consensus 32 te~~A~~la~~l~~~g~~-~~v~~~~~~~~~~l~~~----~~~~~~~vi~~~sT~G~G~~pd~~~~F~~~L~~~~~~l~~ 106 (618)
T 3qe2_A 32 AEEFANRLSKDAHRYGMR-GMSADPEEYDLADLSSL----PEIDNALVVFCMATYGEGDPTDNAQDFYDWLQETDVDLSG 106 (618)
T ss_dssp HHHHHHHHHHHGGGGTCC-EEEECGGGSCGGGGGGG----GGSTTCEEEEEEECBGGGBCCGGGHHHHHHHHHCCCCCTT
T ss_pred HHHHHHHHHHHHHhCCCc-eEEechHHcCHHHhhhc----ccccCcEEEEEcCccCCCCCCHHHHHHHHHHhhccccccC
Confidence 456899999999888984 43211111222221111 11 112344432212 112222233333343 3567
Q ss_pred CCeEEEEecCCcc
Q 025580 207 EGVLIIGSGSATH 219 (250)
Q Consensus 207 erVlIIgSG~lSH 219 (250)
.+++|+|+|+.+.
T Consensus 107 ~~~avfGlGd~~Y 119 (618)
T 3qe2_A 107 VKFAVFGLGNKTY 119 (618)
T ss_dssp CEEEEEEEECTTS
T ss_pred CEEEEEeCCCCCc
Confidence 8999999999864
No 19
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=33.23 E-value=25 Score=29.85 Aligned_cols=19 Identities=37% Similarity=0.378 Sum_probs=13.8
Q ss_pred CCCCCHHHHHHHHHHHHhC
Q 025580 130 PAPGAPELAKRVKDLLKAS 148 (250)
Q Consensus 130 ~~~G~~~LA~~i~~~l~~~ 148 (250)
+.-.+|++.+.+.+.+++.
T Consensus 120 pl~~~p~~i~~la~~i~~~ 138 (269)
T 2xvy_A 120 PLIGTTADAEAVAEALVAS 138 (269)
T ss_dssp CSSCSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 4567888888887777654
No 20
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=32.19 E-value=53 Score=26.91 Aligned_cols=54 Identities=24% Similarity=0.473 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCCC-HHHHHHHHHHhccc-ccCCeEEEE
Q 025580 136 ELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHT-GTYHYNIGKALAPL-KEEGVLIIG 213 (250)
Q Consensus 136 ~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~~-~~~~~~LG~aL~~l-~derVlIIg 213 (250)
+|-+.|.+.|++.|.+ + .|.|+.. . ...| |.-..++++++.+= .|++|+|-|
T Consensus 33 ~lK~~i~~~L~~~G~e-V-------~D~G~~~------~------------~~~dYpd~a~~va~~V~~g~~d~GIliCG 86 (169)
T 3ph3_A 33 NLKREIADFLKKRGYE-V-------IDFGTHG------N------------ESVDYPDFGLKVAEAVKSGECDRGIVICG 86 (169)
T ss_dssp HHHHHHHHHHHHTTCE-E-------EECCCCS------S------------SCCCHHHHHHHHHHHHHTTSSSEEEEEES
T ss_pred HHHHHHHHHHHHCCCE-E-------EEcCCCC------C------------CCCCHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 4678888999988883 4 3666621 0 1123 45567777777764 368899999
Q ss_pred ec
Q 025580 214 SG 215 (250)
Q Consensus 214 SG 215 (250)
||
T Consensus 87 TG 88 (169)
T 3ph3_A 87 TG 88 (169)
T ss_dssp SS
T ss_pred Cc
Confidence 99
No 21
>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A
Probab=30.96 E-value=1.6e+02 Score=24.40 Aligned_cols=91 Identities=14% Similarity=0.103 Sum_probs=48.2
Q ss_pred HHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeE---EecCCCCccCCCCCC-Cc---------ccccccCCCCCCHHHHHH
Q 025580 74 GFLQAWQAKVFSQRPNSILVISAHWDTDFPSV---NVVQRNDTIHDFYGF-PK---------QMYDLKYPAPGAPELAKR 140 (250)
Q Consensus 74 ~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I---~~~~~~~~~~Df~gF-p~---------~~y~~~y~~~G~~~LA~~ 140 (250)
...+.+.+.+.+.+||.||.++=|.-....++ +.+...-.+-|-.|. |. ..|.-.. + .++
T Consensus 47 ~~~~~l~~~~~~~~pd~vi~vG~a~gr~~i~iEr~A~N~~~~~~pDn~G~~p~~~~i~~~gp~~~~ttl----p---i~~ 119 (208)
T 1x10_A 47 KAKEVLEKTLEEIKPDIAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPGAPTAYFSTL----P---IKK 119 (208)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEEECTTCCSEEEECEEESCBCCSSCCTTSCCCCSBCSSTTSCSEEECCS----C---HHH
T ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCceEEeEEEEEcCCCcccCCCCCCCCCCCceeCCCCceeEcCC----C---HHH
Confidence 34455555566679999999997765554332 222222123343343 11 1222211 2 366
Q ss_pred HHHHHHhCCCCcccccCCCC---cccchhhhhhhh
Q 025580 141 VKDLLKASGIKHVNEDRKRG---LDHGAWVPLMLM 172 (250)
Q Consensus 141 i~~~l~~~Gid~~~~~~~~~---lDHG~~vPL~~l 172 (250)
+.+.++++|+ ++..+.+-| =+|=.+--|++.
T Consensus 120 iv~~l~~~gi-~~~vS~~AG~ylCN~i~Y~sL~~~ 153 (208)
T 1x10_A 120 IMKKLHERGI-PAYISNSAGLYLSNYVMYLSLHHS 153 (208)
T ss_dssp HHHHHHHTTC-CEEEESCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-CEEEecCCCcchhhHHHHHHHHHH
Confidence 7778888999 466544322 245455556655
No 22
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=30.92 E-value=1.6e+02 Score=23.84 Aligned_cols=76 Identities=12% Similarity=0.085 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCC---C-----C-HHHHHHHHHHhcccc
Q 025580 135 PELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMH---H-----T-GTYHYNIGKALAPLK 205 (250)
Q Consensus 135 ~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~---~-----~-~~~~~~LG~aL~~l~ 205 (250)
.+.-.++.+.+.+.++|-+-. .+.+. .+..-...+..+|||-+.-... . | .+.-+..++.|.+..
T Consensus 49 ~~~~~~~~~~l~~~~vdgiIi---~~~~~---~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G 122 (276)
T 3jy6_A 49 IEREKTLLRAIGSRGFDGLIL---QSFSN---PQTVQEILHQQMPVVSVDREMDACPWPQVVTDNFEAAKAATTAFRQQG 122 (276)
T ss_dssp HHHHHHHHHHHHTTTCSEEEE---ESSCC---HHHHHHHHTTSSCEEEESCCCTTCSSCEEECCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCCEEEE---ecCCc---HHHHHHHHHCCCCEEEEecccCCCCCCEEEEChHHHHHHHHHHHHHcC
Confidence 333445556666666642111 11122 2222222345788777654321 1 2 355567777777776
Q ss_pred cCCeEEEEecC
Q 025580 206 EEGVLIIGSGS 216 (250)
Q Consensus 206 derVlIIgSG~ 216 (250)
.++|++|+...
T Consensus 123 ~~~I~~i~~~~ 133 (276)
T 3jy6_A 123 YQHVVVLTSEL 133 (276)
T ss_dssp CCEEEEEEECS
T ss_pred CCeEEEEecCC
Confidence 78899987643
No 23
>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1
Probab=30.85 E-value=1.8e+02 Score=24.47 Aligned_cols=106 Identities=14% Similarity=0.129 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeE---EecCCCCccCCCCCC-Cc---------ccccccCCCCCCHHHH
Q 025580 72 ARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSV---NVVQRNDTIHDFYGF-PK---------QMYDLKYPAPGAPELA 138 (250)
Q Consensus 72 ~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I---~~~~~~~~~~Df~gF-p~---------~~y~~~y~~~G~~~LA 138 (250)
+....+.+.+.+.+.+||.||.++=|.-....++ +.+...-.+-|-.|. |. ..|.-.. + .
T Consensus 46 ~~~~~~~l~~~i~~~~Pd~Vi~vG~aggr~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~~gp~~~~ttL----p---i 118 (220)
T 1a2z_A 46 VKRATIELKRYLEEIKPEIVINLGLAPTYSNITVERIAVNIIDARIPDNDGYQPIDEKIEEDAPLAYMATL----P---V 118 (220)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEEEECTTCSSEEEECEEESCBCCSSCCTTSCCCSSBCSCTTSCSEEECCS----C---H
T ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCCCCceEEEEEEEccCCCCCcCCCCCCCCCCCCccCCCCceeEcCC----C---H
Confidence 3344555666666679999999998766554333 222222123343343 11 1222111 2 3
Q ss_pred HHHHHHHHhCCCCcccccCCCC---cccchhhhhhhhcCC-CCCCEEEeec
Q 025580 139 KRVKDLLKASGIKHVNEDRKRG---LDHGAWVPLMLMYPE-ADIPVCQLSV 185 (250)
Q Consensus 139 ~~i~~~l~~~Gid~~~~~~~~~---lDHG~~vPL~~l~p~-~diPVV~vS~ 185 (250)
+++.+.++++|+ ++..+.+-| =+|=.+.-|++.... .+++..=|.+
T Consensus 119 ~~iv~~l~~~gi-p~~vS~~AG~ylCN~i~Y~sL~~~~~~~~~~~~gFIHV 168 (220)
T 1a2z_A 119 RAITKTLRDNGI-PATISYSAGTYLCNYVMFKTLHFSKIEGYPLKAGFIHV 168 (220)
T ss_dssp HHHHHHHHHTTC-CEEEESCCCSSHHHHHHHHHHHHHHHHCCCSEEEEEEE
T ss_pred HHHHHHHHHCCC-CEEEeCCCCcchhhHHHHHHHHHHHhccCCceeEEEEe
Confidence 667788888999 466544322 255555556655321 1445444444
No 24
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=30.18 E-value=1.2e+02 Score=24.51 Aligned_cols=76 Identities=17% Similarity=0.189 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCC-CCCHHHHHHHHHHhcc-----cccC
Q 025580 134 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQM-HHTGTYHYNIGKALAP-----LKEE 207 (250)
Q Consensus 134 ~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~-~~~~~~~~~LG~aL~~-----l~de 207 (250)
-..+|+.|.+.+.+.|++ +.. ..++.- .+ -.++.+ .||-++-.. +..+.....|=+.|.. +..+
T Consensus 35 Te~~A~~ia~~l~~~g~~-v~v---~~l~~~--~~---~l~~~d-~vi~g~~Ty~G~~p~~~~~fl~~L~~~~~~~l~~~ 104 (191)
T 1bvy_F 35 AEGTARDLADIAMSKGFA-PQV---ATLDSH--AG---NLPREG-AVLIVTASYNGHPPDNAKQFVDWLDQASADEVKGV 104 (191)
T ss_dssp HHHHHHHHHHHHHTTTCC-CEE---EEGGGS--TT---CCCSSS-EEEEEECCBTTBCCTTTHHHHHHHHTCCSSCCTTC
T ss_pred HHHHHHHHHHHHHhCCCc-eEE---eeHHHh--hh---hhhhCC-eEEEEEeecCCCcCHHHHHHHHHHHhccchhhCCC
Confidence 356899999999888884 432 122220 11 011112 233322211 1112333334444443 4568
Q ss_pred CeEEEEecCCcc
Q 025580 208 GVLIIGSGSATH 219 (250)
Q Consensus 208 rVlIIgSG~lSH 219 (250)
+++|+|+|+.+.
T Consensus 105 ~~avfG~Gds~y 116 (191)
T 1bvy_F 105 RYSVFGCGDKNW 116 (191)
T ss_dssp CEEEEEEECTTS
T ss_pred EEEEEEccCCch
Confidence 999999998754
No 25
>3a9s_A D-arabinose isomerase; rossmann fold, beta barrel, carbohydrate metabolism, cytoplasm, fucose metabolism, manganese, metal- binding; 1.60A {Geobacillus pallidus} PDB: 3a9r_A 3a9t_A*
Probab=29.80 E-value=43 Score=32.75 Aligned_cols=113 Identities=19% Similarity=0.224 Sum_probs=58.5
Q ss_pred HHHHhhcCCCCEEEEEeCCCCCCCCeEEec-CCCCccCCCCCCCcccccccCCCCCCHHHHHHHHHHHHhCCCCcccccC
Q 025580 79 WQAKVFSQRPNSILVISAHWDTDFPSVNVV-QRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLKASGIKHVNEDR 157 (250)
Q Consensus 79 l~~~l~~~~PdaIVviS~Hw~~~~~~I~~~-~~~~~~~Df~gFp~~~y~~~y~~~G~~~LA~~i~~~l~~~Gid~~~~~~ 157 (250)
..++.++.++|++|+++|+|.....++... ..|.++. ||++. +-||.-.|++.+ ..+++.|+ +...-.
T Consensus 76 ~ae~F~~~~vd~ii~~~~~w~yg~et~~~~~~~Pvllw---~~~~~------e~pG~~gl~a~~-~~l~q~Gi-p~~~I~ 144 (595)
T 3a9s_A 76 AAEKFAREGVGVSITVTPCWCYGTETMDMDPHIPKAVW---GFNGT------ERPGAVYLAAVL-AGYNQKGL-PAFGIY 144 (595)
T ss_dssp HHHHHHHHTEEEEEEEESSCCCGGGTCCCCTTSCEEEE---ECCCS------SSCHHHHHHHHH-HHHHHHTC-CCEEEE
T ss_pred HHHHHHHcCCCEEEEEeccCCCHHHHHhhcCCCCEEEE---eCCCC------CCcchhHHHHHH-HHHHHcCC-ceEEEe
Confidence 334444458999999999987643222111 1233332 33321 335677777744 56778888 332111
Q ss_pred CCCcccchhhhhhhhcCCCCCCEEEeecCCCCCHHHHHHHHHHhcccccCCeEEEEecC
Q 025580 158 KRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGSGS 216 (250)
Q Consensus 158 ~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~~~~~~~~LG~aL~~l~derVlIIgSG~ 216 (250)
...+.. ..+..+|- .+ .....+..+-+++.+.++..++++||+..
T Consensus 145 G~~~~d---------~~d~~~~~---~v--~e~i~~f~raa~av~~lr~~rig~iG~~~ 189 (595)
T 3a9s_A 145 GKDVQD---------AGDTNIPE---DV--KEKLIRFAKAGLAVAMMKGKSYLSIGSVS 189 (595)
T ss_dssp CSSCCC---------TTCCCCCH---HH--HHHHHHHHHHHHHHHHHTTCEEEEESSCC
T ss_pred cCcccc---------cccccccH---HH--HHHHHHHHHHHHHHHHhhcCeEEEECCCC
Confidence 100000 00111110 00 00124556667788888999999999764
No 26
>4hps_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 1.55A {Xenorhabdus bovienii} PDB: 4gxh_A
Probab=29.66 E-value=1.5e+02 Score=25.17 Aligned_cols=96 Identities=17% Similarity=0.137 Sum_probs=49.2
Q ss_pred HHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeE---EecCCCCccCCCCCCCcccccc------cCCCCCCHHHHHHHHHH
Q 025580 74 GFLQAWQAKVFSQRPNSILVISAHWDTDFPSV---NVVQRNDTIHDFYGFPKQMYDL------KYPAPGAPELAKRVKDL 144 (250)
Q Consensus 74 ~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I---~~~~~~~~~~Df~gFp~~~y~~------~y~~~G~~~LA~~i~~~ 144 (250)
...+.+.+.+.+.+||.||.++-+.-....++ +.+...-.+-|-.|+-+..-.+ .|...-+ .+++.+.
T Consensus 70 ~~~~~l~~~i~~~~Pd~VihvG~aggr~~i~lEr~A~N~~d~~~pDn~G~~P~~~~i~~~Gp~a~~stLp---vk~~v~~ 146 (228)
T 4hps_A 70 TSLEHLYAAVDKYQPELVISVGQAGGRTNITVERVAININDARIPDNAGNQPIDTPVIVDGPAAYFSRLP---IKTMVNA 146 (228)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEEECTTCSSEEEECEEESCEECSSCCTTSCCCEEECSSTTCCSEEECCSC---HHHHHHH
T ss_pred HHHHHHHHHHHhhCCCEEEEeccCCCCceEEEEEEEeccCCCCCCCcCCCCCCCCcCcCCCCceeeeCCC---HHHHHHH
Confidence 34555555566779999999998766554332 2221111233444441110000 1112222 3567788
Q ss_pred HHhCCCCcccccCCCC---cccchhhhhhhhc
Q 025580 145 LKASGIKHVNEDRKRG---LDHGAWVPLMLMY 173 (250)
Q Consensus 145 l~~~Gid~~~~~~~~~---lDHG~~vPL~~l~ 173 (250)
++++|+ ++..+.+-| =+|=.+.-|++..
T Consensus 147 l~~~Gi-pa~vS~dAGtYvCN~iyY~sL~~~~ 177 (228)
T 4hps_A 147 LNTAGI-PASVSQTAGTFVCNHVMYGLLHYLA 177 (228)
T ss_dssp HHHTTC-CEEEESCCCSSHHHHHHHHHHHHHH
T ss_pred HHHcCC-cEEEeCCCCcchhHHHHHHHHHHHH
Confidence 888999 466554332 2454455555543
No 27
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=29.38 E-value=2.3e+02 Score=23.04 Aligned_cols=77 Identities=4% Similarity=-0.109 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCC---C-----C-HHHHHHHHHHhccc
Q 025580 134 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMH---H-----T-GTYHYNIGKALAPL 204 (250)
Q Consensus 134 ~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~---~-----~-~~~~~~LG~aL~~l 204 (250)
+++....+.+.+.+.++|-+-... .+. ..++.-...+.++|||.+.-... . | .+.-+.+++.|.+.
T Consensus 49 ~~~~~~~~~~~l~~~~vdgiIi~~---~~~--~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~ 123 (291)
T 3egc_A 49 DIVREREAVGQFFERRVDGLILAP---SEG--EHDYLRTELPKTFPIVAVNRELRIPGCGAVLSENVRGARTAVEYLIAR 123 (291)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECC---CSS--CCHHHHHSSCTTSCEEEESSCCCCTTCEEEEECHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeC---CCC--ChHHHHHhhccCCCEEEEecccCCCCCCEEEECcHHHHHHHHHHHHHc
Confidence 444455666777777775221111 111 11222233456899998765432 1 1 35556777777777
Q ss_pred ccCCeEEEEec
Q 025580 205 KEEGVLIIGSG 215 (250)
Q Consensus 205 ~derVlIIgSG 215 (250)
..++|++|+.-
T Consensus 124 G~~~i~~i~~~ 134 (291)
T 3egc_A 124 GHTRIGAIVGS 134 (291)
T ss_dssp TCCSEEEECSC
T ss_pred CCCEEEEEeCC
Confidence 67899998643
No 28
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=28.98 E-value=74 Score=26.38 Aligned_cols=78 Identities=10% Similarity=0.049 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCC-------------CHHHHHHHHHH
Q 025580 134 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHH-------------TGTYHYNIGKA 200 (250)
Q Consensus 134 ~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~-------------~~~~~~~LG~a 200 (250)
+++-..+..+.+.+.++|-+-. .+.|...+.+..-...+..+|||.+.-.... +.+.-+.+++.
T Consensus 46 ~~~~~~~~i~~l~~~~vdgiii---~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~ 122 (297)
T 3rot_A 46 DVPKQVQFIESALATYPSGIAT---TIPSDTAFSKSLQRANKLNIPVIAVDTRPKDKTKNPYLVFLGSDNLLAGKKLGEK 122 (297)
T ss_dssp CHHHHHHHHHHHHHTCCSEEEE---CCCCSSTTHHHHHHHHHHTCCEEEESCCCSCTTTSCCSCEEECCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEE---eCCCHHHHHHHHHHHHHCCCCEEEEcCCCccccccCcceEEccChHHHHHHHHHH
Confidence 4444445556666667652111 2233333333322223356787776543211 13455677777
Q ss_pred hcccc--cCCeEEEEe
Q 025580 201 LAPLK--EEGVLIIGS 214 (250)
Q Consensus 201 L~~l~--derVlIIgS 214 (250)
|.+.. .++|++|+.
T Consensus 123 l~~~g~~~~~i~~i~g 138 (297)
T 3rot_A 123 ALELTPSAKRALVLNP 138 (297)
T ss_dssp HHHHCTTCCEEEEEES
T ss_pred HHHhcCCCceEEEEeC
Confidence 77766 678888863
No 29
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=28.62 E-value=1.8e+02 Score=21.56 Aligned_cols=18 Identities=22% Similarity=0.560 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHhCCCC
Q 025580 134 APELAKRVKDLLKASGIK 151 (250)
Q Consensus 134 ~~~LA~~i~~~l~~~Gid 151 (250)
...+|+.|.+.+.+.|++
T Consensus 15 T~~~A~~ia~~l~~~g~~ 32 (148)
T 3f6r_A 15 TESIAQKLEELIAAGGHE 32 (148)
T ss_dssp HHHHHHHHHHHHHTTTCE
T ss_pred HHHHHHHHHHHHHhCCCe
Confidence 356899999999988873
No 30
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=27.88 E-value=1.5e+02 Score=22.39 Aligned_cols=75 Identities=13% Similarity=0.091 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhCCCCcccc-cCCCCc-ccchhhhhhhhcCCCCCCEEEeecCCCCCHHHHHHHHHHhcccccCCeEEE
Q 025580 135 PELAKRVKDLLKASGIKHVNE-DRKRGL-DHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLII 212 (250)
Q Consensus 135 ~~LA~~i~~~l~~~Gid~~~~-~~~~~l-DHG~~vPL~~l~p~~diPVV~vS~~~~~~~~~~~~LG~aL~~l~derVlII 212 (250)
..|.+.|.+.+++.|+.-+.. ..-.|. .||.+---.++.-..|.||+...+ .++++.-++=..|+++.+++++.+
T Consensus 29 ~pL~~~Iv~~~~~~GiaGaTV~rgi~GfG~~g~ih~~~~l~ls~dlPV~Ie~V---d~~eki~~~l~~l~~~v~~Glvt~ 105 (114)
T 1o51_A 29 KPLFEYLVKRAYELGMKGVTVYRGIMGFGHKRHMHRSDFFSLSPDLPIVLEIV---DEEERINLFLKEIDNIDFDGLVFT 105 (114)
T ss_dssp EEHHHHHHHHHHHTTCSCCEEEECSCCCCC-------------CCCEEEEEEE---ECHHHHHHHHHHHHTCCCCSEEEE
T ss_pred eEHHHHHHHHHHHCCCCeEEEEcCcEEECCCCCEEccceeecCCCCCEEEEEE---cCHHHHHHHHHHHHHHhCCCEEEE
Confidence 347889999999999831221 122333 233344444555456899998887 467888888888888866665554
No 31
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=27.67 E-value=1.1e+02 Score=25.22 Aligned_cols=77 Identities=17% Similarity=0.093 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCC----C-----C-HHHHHHHHHHhcc
Q 025580 134 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMH----H-----T-GTYHYNIGKALAP 203 (250)
Q Consensus 134 ~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~----~-----~-~~~~~~LG~aL~~ 203 (250)
+++.-.+..+.+.+.++|-+-. .+.|.....+..-...+.++|||.+.-... . | .+.-+.+++.|.+
T Consensus 46 ~~~~~~~~i~~l~~~~vdgiIi---~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~ 122 (305)
T 3g1w_A 46 DIQEQITVLEQAIAKNPAGIAI---SAIDPVELTDTINKAVDAGIPIVLFDSGAPDSHAHSFLGTNNYNAGMNAAYKMAE 122 (305)
T ss_dssp CHHHHHHHHHHHHHHCCSEEEE---CCSSTTTTHHHHHHHHHTTCCEEEESSCCTTSCCSCEEECCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCEEEE---cCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCceeEEECcCHHHHHHHHHHHHHH
Confidence 4444444555555556642111 122222222222222335677777654221 1 1 3555777777777
Q ss_pred c--ccCCeEEEE
Q 025580 204 L--KEEGVLIIG 213 (250)
Q Consensus 204 l--~derVlIIg 213 (250)
. ..++|++|+
T Consensus 123 ~~~g~~~i~~i~ 134 (305)
T 3g1w_A 123 LLDGEGEVAVIT 134 (305)
T ss_dssp HTTTCEEEEEEE
T ss_pred HhCCCcEEEEEe
Confidence 6 568899997
No 32
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=26.39 E-value=2.6e+02 Score=22.60 Aligned_cols=40 Identities=13% Similarity=0.073 Sum_probs=25.7
Q ss_pred CCCCCEEEeecCCCC--------C-HHHHHHHHHHhcccccCCeEEEEe
Q 025580 175 EADIPVCQLSVQMHH--------T-GTYHYNIGKALAPLKEEGVLIIGS 214 (250)
Q Consensus 175 ~~diPVV~vS~~~~~--------~-~~~~~~LG~aL~~l~derVlIIgS 214 (250)
+..+|||-+.-.... | .+..+..++.|.+...++|++|+.
T Consensus 97 ~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~ 145 (298)
T 3tb6_A 97 KNGIPFAMINASYAELAAPSFTLDDVKGGMMAAEHLLSLGHTHMMGIFK 145 (298)
T ss_dssp HTTCCEEEESSCCTTCSSCEEEECHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred hcCCCEEEEecCcCCCCCCEEEeCcHHHHHHHHHHHHHCCCCcEEEEcC
Confidence 357888776543211 1 345567777777776789998874
No 33
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=26.35 E-value=34 Score=27.86 Aligned_cols=55 Identities=24% Similarity=0.338 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCCCC-HHHHHHHHHHhccc-ccCCeEEEE
Q 025580 136 ELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMHHT-GTYHYNIGKALAPL-KEEGVLIIG 213 (250)
Q Consensus 136 ~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~~~-~~~~~~LG~aL~~l-~derVlIIg 213 (250)
+|-+.|.+.|++.|.+ + .|.|+... ....| |.-..+.++++.+= .|++|+|-|
T Consensus 16 ~lK~~i~~~L~~~G~e-V-------~D~G~~~~-----------------~~~~dYpd~a~~va~~V~~g~~d~GIliCG 70 (162)
T 2vvp_A 16 ELKQRIIEHLKQTGHE-P-------IDCGALRY-----------------DADDDYPAFCIAAATRTVADPGSLGIVLGG 70 (162)
T ss_dssp HHHHHHHHHHHHTTCE-E-------EECSCCSC-----------------CTTCCHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred HHHHHHHHHHHHCCCE-E-------EEeCCCCC-----------------CCCCChHHHHHHHHHHHHcCCCceEEEEeC
Confidence 4667788999998983 4 35665210 01223 45557777777664 368999999
Q ss_pred ec
Q 025580 214 SG 215 (250)
Q Consensus 214 SG 215 (250)
||
T Consensus 71 TG 72 (162)
T 2vvp_A 71 SG 72 (162)
T ss_dssp SS
T ss_pred Cc
Confidence 99
No 34
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=25.92 E-value=68 Score=26.80 Aligned_cols=85 Identities=14% Similarity=0.136 Sum_probs=45.3
Q ss_pred CCccccceeeecccchhHHHHHhhc-----ceEeEEEeecCCCCCCCcCcCCccccceEEEEcCCCCCCCCCCChhHHHH
Q 025580 1 MMRQRIPVIAAKAGNFFLFFFLINS-----VTLFIFIHYSANPSNATRGQQSRLSVMDTFFISHGSPTLSIDESLPARGF 75 (250)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fisHGsP~l~~~~~~~~~~~ 75 (250)
|++.||=|.+...|..+-+++=+-. ..+..-| |-++. +..-..+...-+|++.+.|-. + .++ .++
T Consensus 5 m~~~ri~vl~SG~gsnl~all~~~~~~~l~~~I~~Vi--sn~~~-a~~l~~A~~~gIp~~~~~~~~----~-~~r--~~~ 74 (209)
T 4ds3_A 5 MKRNRVVIFISGGGSNMEALIRAAQAPGFPAEIVAVF--SDKAE-AGGLAKAEAAGIATQVFKRKD----F-ASK--EAH 74 (209)
T ss_dssp -CCEEEEEEESSCCHHHHHHHHHHTSTTCSEEEEEEE--ESCTT-CTHHHHHHHTTCCEEECCGGG----S-SSH--HHH
T ss_pred CCCccEEEEEECCcHHHHHHHHHHHcCCCCcEEEEEE--ECCcc-cHHHHHHHHcCCCEEEeCccc----c-CCH--HHH
Confidence 6778999999999998877764321 1233322 22111 111011112246777766511 1 111 112
Q ss_pred HHHHHHHhhcCCCCEEEEEe
Q 025580 76 LQAWQAKVFSQRPNSILVIS 95 (250)
Q Consensus 76 l~~l~~~l~~~~PdaIVviS 95 (250)
=+++.+.+++.+||.||+.+
T Consensus 75 d~~~~~~l~~~~~Dliv~ag 94 (209)
T 4ds3_A 75 EDAILAALDVLKPDIICLAG 94 (209)
T ss_dssp HHHHHHHHHHHCCSEEEESS
T ss_pred HHHHHHHHHhcCCCEEEEec
Confidence 24566667778999988876
No 35
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A*
Probab=25.22 E-value=67 Score=27.31 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=22.7
Q ss_pred ceEEEEcCCCCCCCCCCChhHHH-HHHHHHHHhhcCCCCEE
Q 025580 52 MDTFFISHGSPTLSIDESLPARG-FLQAWQAKVFSQRPNSI 91 (250)
Q Consensus 52 ~p~~fisHGsP~l~~~~~~~~~~-~l~~l~~~l~~~~PdaI 91 (250)
...+.++||| .+..+.+ .++.+.+.+++.-|+.-
T Consensus 3 ~aillv~hGS------r~~~~~~~~~~~~~~~v~~~~p~~~ 37 (264)
T 2xwp_A 3 KALLVVSFGT------SYHDTCEKNIVACERDLAASCPDRD 37 (264)
T ss_dssp EEEEEEECCC------SCHHHHHHHHHHHHHHHHHHCTTSE
T ss_pred ceEEEEECCC------CCHHHHHHHHHHHHHHHHHHCCCCe
Confidence 4678999999 2234555 77888777765555543
No 36
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=24.77 E-value=35 Score=27.37 Aligned_cols=54 Identities=28% Similarity=0.372 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcC-CCCCCEEEeecCCCCCHHHHHHHHHHhcccccCCeEEEEe
Q 025580 136 ELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYP-EADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLIIGS 214 (250)
Q Consensus 136 ~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p-~~diPVV~vS~~~~~~~~~~~~LG~aL~~l~derVlIIgS 214 (250)
+|-+.|.+.|++.|.+ + .|+|+... . ..|+ |.-..+.++++. -.|++|+|-||
T Consensus 20 ~lK~~i~~~L~~~G~e-V-------~D~G~~~~-----~~~~dY------------pd~a~~va~~V~-~~d~GIliCGT 73 (148)
T 4em8_A 20 ELRLFLSAYLRDLGCE-V-------FDCGCDPK-----EHSVDY------------PDYVHDVVREVS-DTSFGVLICGT 73 (148)
T ss_dssp HHHHHHHHHHHHTTCE-E-------EECCCCTT-----CSCCCG------------GGGTHHHHTTCB-TTBEEEEEESS
T ss_pred HHHHHHHHHHHHCCCE-E-------EEeCCCCC-----CCCCCh------------HHHHHHHHHHHH-HhCeEEEEccC
Confidence 5778899999999983 4 35665221 0 0122 233467778777 34789999999
Q ss_pred c
Q 025580 215 G 215 (250)
Q Consensus 215 G 215 (250)
|
T Consensus 74 G 74 (148)
T 4em8_A 74 G 74 (148)
T ss_dssp S
T ss_pred c
Confidence 9
No 37
>1wn9_A The hypothetical protein (TT1805); thermus thermophillus, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus} SCOP: d.319.1.1 PDB: 1wna_A
Probab=23.74 E-value=62 Score=25.28 Aligned_cols=68 Identities=19% Similarity=0.307 Sum_probs=45.0
Q ss_pred HHHHHHHHHhh-cCCCCEEEEEeCCCCCCC----Ce--EEecCCCCccCCCCCCCcccccccCCCCCCHHHHHHHHHHHH
Q 025580 74 GFLQAWQAKVF-SQRPNSILVISAHWDTDF----PS--VNVVQRNDTIHDFYGFPKQMYDLKYPAPGAPELAKRVKDLLK 146 (250)
Q Consensus 74 ~~l~~l~~~l~-~~~PdaIVviS~Hw~~~~----~~--I~~~~~~~~~~Df~gFp~~~y~~~y~~~G~~~LA~~i~~~l~ 146 (250)
..|+.+.+.++ ..=|+++|++-.+|+... .. |..+.++-+.-| .|.+ .|. .|+.+||+ +...+.
T Consensus 12 ~Tl~Al~~aLk~~~fp~~~v~liTDwQd~R~~ARYa~ll~~gk~~llt~d--AFGP-----afg-~G~~ALaE-Lv~wl~ 82 (131)
T 1wn9_A 12 VSLEALKAALGGLKLSEAKVYLITDWQDKRDQARYALLLHTGKKDLLVPD--AFGP-----AFP-GGEEALSE-LVGLLL 82 (131)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEEEECCSSGGGCCEEEEEECSSCEEEEEE--EEST-----TST-THHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHccCCCCCceEEEEecccccchhhhhhheeecCCccccccc--ccCC-----Ccc-cHHHHHHH-HHHHHH
Confidence 45777777665 346899999988999863 22 333433334444 2323 267 88999987 667888
Q ss_pred hCCC
Q 025580 147 ASGI 150 (250)
Q Consensus 147 ~~Gi 150 (250)
+.|+
T Consensus 83 ~~G~ 86 (131)
T 1wn9_A 83 AQGA 86 (131)
T ss_dssp HTTC
T ss_pred HcCC
Confidence 8998
No 38
>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1
Probab=23.28 E-value=2.8e+02 Score=22.86 Aligned_cols=92 Identities=16% Similarity=0.150 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeE---EecCCCCccCCCCCC-C---------cccccccCCCCCCHHHHH
Q 025580 73 RGFLQAWQAKVFSQRPNSILVISAHWDTDFPSV---NVVQRNDTIHDFYGF-P---------KQMYDLKYPAPGAPELAK 139 (250)
Q Consensus 73 ~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I---~~~~~~~~~~Df~gF-p---------~~~y~~~y~~~G~~~LA~ 139 (250)
....+.+.+.+.+.+||.||.++=|.-....++ +.+...-.+-|-.|. | +..|.-.. + .+
T Consensus 43 ~~~~~~l~~~~~~~~Pd~vi~vG~a~gr~~i~~Er~A~N~~~~~~pDn~G~~p~~~~i~~~gp~~~~t~L----p---i~ 115 (206)
T 1iu8_A 43 KRAREKLLKVLDDVRPDITINLGLAPGRTHISVERVAVNMIDARIPDNDGEQPKDEPIVEGGPAAYFATI----P---TR 115 (206)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEEECTTCSSEEEECEEESCEECSSCCTTSCCCEEECSSTTCCSEEECCS----C---HH
T ss_pred HHHHHHHHHHHHHhCCCEEEEcccCCCCceEEEEEEEecCCCCccCCCCCCCCCCCceeCCCCceeEcCC----C---HH
Confidence 344555555566679999999998765554332 222111123343333 1 11222211 2 46
Q ss_pred HHHHHHHhCCCCcccccCCCC---cccchhhhhhhh
Q 025580 140 RVKDLLKASGIKHVNEDRKRG---LDHGAWVPLMLM 172 (250)
Q Consensus 140 ~i~~~l~~~Gid~~~~~~~~~---lDHG~~vPL~~l 172 (250)
++.+.++++|+ ++..+.+-| =+|=.+.-|++.
T Consensus 116 ~iv~~l~~~gi-p~~vS~~AG~ylCN~i~Y~sL~~~ 150 (206)
T 1iu8_A 116 EIVEEMKKNGI-PAVLSYTAGTYLCNFAMYLTLHTS 150 (206)
T ss_dssp HHHHHHHHTTC-CEEEESCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CEEEeCCCCccHhhHHHHHHHHHH
Confidence 67788888999 466544322 244445555554
No 39
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=23.06 E-value=1.1e+02 Score=19.67 Aligned_cols=25 Identities=12% Similarity=-0.013 Sum_probs=21.4
Q ss_pred CEEEeecCCCCCHHHHHHHHHHhccc
Q 025580 179 PVCQLSVQMHHTGTYHYNIGKALAPL 204 (250)
Q Consensus 179 PVV~vS~~~~~~~~~~~~LG~aL~~l 204 (250)
|+|+|.+ ...+.++--+|-++|.++
T Consensus 1 P~I~I~~-~grt~eqK~~L~~~it~~ 25 (62)
T 3m20_A 1 PVLIVYG-PKLDVGKKREFVERLTSV 25 (62)
T ss_dssp CEEEEEC-SCCCHHHHHHHHHHHHHH
T ss_pred CEEEEEE-CCCCHHHHHHHHHHHHHH
Confidence 8999999 889998888888877765
No 40
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=22.57 E-value=1.7e+02 Score=24.30 Aligned_cols=78 Identities=10% Similarity=0.042 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCC---C------C-HHHHHHHHHHhc-
Q 025580 134 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMH---H------T-GTYHYNIGKALA- 202 (250)
Q Consensus 134 ~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~---~------~-~~~~~~LG~aL~- 202 (250)
+++...++.+.+.+.++|-+-. .+.|.....+..-...+..+|||-+.-... . | .+.-+..++.|.
T Consensus 43 ~~~~~~~~i~~l~~~~vdgiIi---~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~ 119 (313)
T 3m9w_A 43 NEETQMSQIENMINRGVDVLVI---IPYNGQVLSNVVKEAKQEGIKVLAYDRMINDADIDFYISFDNEKVGELQAKALVD 119 (313)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEE---ECSSTTSCHHHHHHHHTTTCEEEEESSCCTTSCCSEEEEECHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEE---eCCChhhhHHHHHHHHHCCCeEEEECCcCCCCCceEEEecCHHHHHHHHHHHHHH
Confidence 4444555566666666652111 122333333333333445788877654321 1 1 344567777777
Q ss_pred ccccCCeEEEEe
Q 025580 203 PLKEEGVLIIGS 214 (250)
Q Consensus 203 ~l~derVlIIgS 214 (250)
+...++|++|+.
T Consensus 120 ~~G~~~i~~i~g 131 (313)
T 3m9w_A 120 IVPQGNYFLMGG 131 (313)
T ss_dssp HCSSEEEEEEES
T ss_pred hCCCCcEEEEEC
Confidence 655678998853
No 41
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=21.91 E-value=1.3e+02 Score=24.51 Aligned_cols=23 Identities=9% Similarity=0.082 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcc--cccCCeEEEE
Q 025580 191 GTYHYNIGKALAP--LKEEGVLIIG 213 (250)
Q Consensus 191 ~~~~~~LG~aL~~--l~derVlIIg 213 (250)
.+.-+.+++.|.+ ...++|++|+
T Consensus 108 ~~~g~~~~~~l~~~~~g~~~i~~i~ 132 (291)
T 3l49_A 108 YSIGAELALQMVADLGGKGNVLVFN 132 (291)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEe
Confidence 3555777888777 5567899984
No 42
>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis}
Probab=21.80 E-value=3.5e+02 Score=22.48 Aligned_cols=108 Identities=12% Similarity=0.084 Sum_probs=56.1
Q ss_pred HHHHHHHHhhcCCCCEEEEEeCCCCCCCCeE---EecCCCCccCCCCCCCcccccc------cCCCCCCHHHHHHHHHHH
Q 025580 75 FLQAWQAKVFSQRPNSILVISAHWDTDFPSV---NVVQRNDTIHDFYGFPKQMYDL------KYPAPGAPELAKRVKDLL 145 (250)
Q Consensus 75 ~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I---~~~~~~~~~~Df~gFp~~~y~~------~y~~~G~~~LA~~i~~~l 145 (250)
..+.+.+.+.+.+||.||.++-|.-....++ +.+...-.+-|-.|+-+..-.+ .|...-+ .+++.+.+
T Consensus 49 ~~~~l~~~~~~~~Pd~VihvG~aggr~~i~lEr~A~N~~d~~~pDn~G~~P~~~~i~~~Gp~~~~s~Lp---v~~~v~~l 125 (215)
T 3lac_A 49 SISVLKEYIEELAPEFIICIGQAGGRPDITIERVAINIDDARIADNEGNQPVDVPVVEEGPAAYWSTLP---MKAIVKKL 125 (215)
T ss_dssp HHHHHHHHHHHHCCSEEEEEEECTTCSSEEEECEEESCBCCSSCCTTSCCCSSBCSSTTSCSEEECCSC---HHHHHHHH
T ss_pred HHHHHHHHHHhhCCCeEEEeccCCCCceEEEEEEEeccCCCcCCCcCCCCCCCCcCcCCCCceeecCCC---HHHHHHHH
Confidence 4455555566779999999998865554332 2221111233444441110001 0111112 35677888
Q ss_pred HhCCCCcccccCCCC---cccchhhhhhhhcCC-CCCCEEEeecC
Q 025580 146 KASGIKHVNEDRKRG---LDHGAWVPLMLMYPE-ADIPVCQLSVQ 186 (250)
Q Consensus 146 ~~~Gid~~~~~~~~~---lDHG~~vPL~~l~p~-~diPVV~vS~~ 186 (250)
+++|+ ++..+.+-| =+|=.+.-|++.... ..++..=|.++
T Consensus 126 ~~~gi-pa~vS~dAG~yvCN~i~Y~sL~~~~~~~~~~~~gFIHVP 169 (215)
T 3lac_A 126 QEEGI-PASVSQTAGTFVCNHLFYGLMHELEKHDTKMKGGFIHIP 169 (215)
T ss_dssp HHTTC-CEEEESCCCSSHHHHHHHHHHHHHGGGTTSSEEEEEEEC
T ss_pred HhCCC-cEEEcCCCCccccHHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 99999 566554333 256556667665432 34555544443
No 43
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=21.51 E-value=2.8e+02 Score=23.08 Aligned_cols=74 Identities=15% Similarity=0.085 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHhCCCCccccc--CCCCcccchhhhhhhhcCCCCCCEEEeecCC--CCCHHHHHHHHHHhcc----cc
Q 025580 134 APELAKRVKDLLKASGIKHVNED--RKRGLDHGAWVPLMLMYPEADIPVCQLSVQM--HHTGTYHYNIGKALAP----LK 205 (250)
Q Consensus 134 ~~~LA~~i~~~l~~~Gid~~~~~--~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~--~~~~~~~~~LG~aL~~----l~ 205 (250)
..++|++|.+.+ +.|++ +... .+..++. + ++. -++|-++-.. +..|.....|=+.|.. +.
T Consensus 54 te~~A~~La~~l-~~g~~-v~v~~l~~~~~~~--------l-~~~-~~vI~~tsTyG~Ge~Pdna~~F~~~L~~~~~~l~ 121 (219)
T 3hr4_A 54 SEALAWDLGALF-SCAFN-PKVVCMDKYRLSC--------L-EEE-RLLLVVTSTFGNGDCPGNGEKLKKSLFMLKELNN 121 (219)
T ss_dssp HHHHHHHHHHHH-TTTSE-EEEEEGGGCCGGG--------G-GTC-SEEEEEEECBTTTBCCGGGHHHHHHHHHCCCCSS
T ss_pred HHHHHHHHHHHH-HcCCC-eEEEEcccCCHhH--------h-ccC-CeEEEEEeccCCCcCCHHHHHHHHHHHhcchhhc
Confidence 445788898887 46773 3321 1111111 1 222 2344433322 2223333333333333 35
Q ss_pred cCCeEEEEecCCcc
Q 025580 206 EEGVLIIGSGSATH 219 (250)
Q Consensus 206 derVlIIgSG~lSH 219 (250)
..+++|+|+|+.+-
T Consensus 122 ~~~~aVfGlGdssY 135 (219)
T 3hr4_A 122 KFRYAVFGLGSSMY 135 (219)
T ss_dssp CCEEEEEEEECTTS
T ss_pred CCEEEEEeCCCcch
Confidence 67899999999763
No 44
>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} SCOP: c.56.4.0
Probab=21.30 E-value=3.6e+02 Score=22.43 Aligned_cols=111 Identities=12% Similarity=0.057 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeE---EecCCCCccCCCCCCCcccccc------cCCCCCCHHHHHHHH
Q 025580 72 ARGFLQAWQAKVFSQRPNSILVISAHWDTDFPSV---NVVQRNDTIHDFYGFPKQMYDL------KYPAPGAPELAKRVK 142 (250)
Q Consensus 72 ~~~~l~~l~~~l~~~~PdaIVviS~Hw~~~~~~I---~~~~~~~~~~Df~gFp~~~y~~------~y~~~G~~~LA~~i~ 142 (250)
+.+..+.+.+.+.+.+||.||.++-|.-....++ +.+...-.+-|-.|+-+..-.+ .|...-+ .+++.
T Consensus 47 ~~~~~~~l~~~i~~~~Pd~Vi~vG~a~gr~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~~gp~~~~stLp---v~~iv 123 (215)
T 3giu_A 47 FKKVDNIINKTLASNHYDVVLAIGQAGGRNAITPERVAINIDDARIPDNDDFQPIDQAIHLDGAPAYFSNLP---VKAMT 123 (215)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEEEECTTCCSBEEBCEEESCEECSSCCTTSCCCEEECSCTTSCSEEECCSC---HHHHH
T ss_pred hHhHHHHHHHHHHHhCCCEEEEeccCCCCceEEEEEEEeccCCCCCCCCCCCCCCCCcccCCCccccccCCC---HHHHH
Confidence 3445666666677889999999987765554332 2221111233434431111000 0111222 36678
Q ss_pred HHHHhCCCCcccccCCCC---cccchhhhhhhhcCC-CCCCEEEeecC
Q 025580 143 DLLKASGIKHVNEDRKRG---LDHGAWVPLMLMYPE-ADIPVCQLSVQ 186 (250)
Q Consensus 143 ~~l~~~Gid~~~~~~~~~---lDHG~~vPL~~l~p~-~diPVV~vS~~ 186 (250)
+.++++|+ ++..+.+-| =+|=.+.-|++.... .+++..=|.++
T Consensus 124 ~~l~~~gi-pa~vS~dAG~yvCN~i~Y~sL~~~~~~~~~~~~gFIHVP 170 (215)
T 3giu_A 124 QSIINQGL-PGALSNSAGTFVCNHTLYHLGYLQDKHYPHLRFGFIHVP 170 (215)
T ss_dssp HHHHHTTC-CBCCBSCCCSSHHHHHHHHHHHHHHHTCTTCEEEEEEEC
T ss_pred HHHHHcCC-CEEEeCCCCccccHHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 88889999 466554333 255555666665432 34555555543
No 45
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=21.05 E-value=3.4e+02 Score=22.24 Aligned_cols=76 Identities=13% Similarity=0.175 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCC---C-----C-HHHHHHHHHHhccc
Q 025580 134 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMH---H-----T-GTYHYNIGKALAPL 204 (250)
Q Consensus 134 ~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~---~-----~-~~~~~~LG~aL~~l 204 (250)
+.+.-.++.+.+.+.++|-+-... .+... +..-...+..+|||-+.-... . | .+.-+..++.|.+.
T Consensus 68 ~~~~~~~~~~~l~~~~vdgiIi~~---~~~~~--~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~ 142 (305)
T 3huu_A 68 SGDLYHEVKTMIQSKSVDGFILLY---SLKDD--PIEHLLNEFKVPYLIVGKSLNYENIIHIDNDNIDAAYQLTQYLYHL 142 (305)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEESS---CBTTC--HHHHHHHHTTCCEEEESCCCSSTTCCEEECCHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHhCCCCEEEEeC---CcCCc--HHHHHHHHcCCCEEEECCCCcccCCcEEEeCHHHHHHHHHHHHHHC
Confidence 444455666777777775221111 11111 221122345788888765321 1 1 34556677777777
Q ss_pred ccCCeEEEEe
Q 025580 205 KEEGVLIIGS 214 (250)
Q Consensus 205 ~derVlIIgS 214 (250)
..++|++|+.
T Consensus 143 G~~~I~~i~~ 152 (305)
T 3huu_A 143 GHRHILFLQE 152 (305)
T ss_dssp TCCSEEEEEE
T ss_pred CCCeEEEEcC
Confidence 6789999965
No 46
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=20.62 E-value=2.7e+02 Score=21.26 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHHHhCCCC
Q 025580 134 APELAKRVKDLLKASGIK 151 (250)
Q Consensus 134 ~~~LA~~i~~~l~~~Gid 151 (250)
...+|+.|.+.+.+.|++
T Consensus 23 T~~~A~~ia~~l~~~g~~ 40 (167)
T 1ykg_A 23 ARRVAEALRDDLLAAKLN 40 (167)
T ss_dssp HHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHCCCc
Confidence 346899999999888873
No 47
>2dcl_A Hypothetical UPF0166 protein PH1503; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; HET: AMP; 2.28A {Pyrococcus horikoshii}
Probab=20.50 E-value=1.9e+02 Score=22.22 Aligned_cols=77 Identities=16% Similarity=0.249 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhCCCCcccc-cCCCCc-ccchhhhhhhhcCCCCCCEEEeecCCCCCHHHHHHHHHHhcccccCCeEE
Q 025580 134 APELAKRVKDLLKASGIKHVNE-DRKRGL-DHGAWVPLMLMYPEADIPVCQLSVQMHHTGTYHYNIGKALAPLKEEGVLI 211 (250)
Q Consensus 134 ~~~LA~~i~~~l~~~Gid~~~~-~~~~~l-DHG~~vPL~~l~p~~diPVV~vS~~~~~~~~~~~~LG~aL~~l~derVlI 211 (250)
+..|.+.|.+.+++.|+.-+.. ..-.|. .||.+---.++.-..|.||+...+ .++++.-+|=..|.++.+.+++.
T Consensus 24 g~pL~~~Iv~~a~~~GiaGaTV~rgi~GfG~~g~ih~~~~l~ls~dlPVvIe~V---d~~eki~~~l~~l~~lv~~GlVt 100 (127)
T 2dcl_A 24 GRPLYKVIVEKLREMGIAGATVYRGIYGFGKKSRVHSSDVIRLSTDLPIIVEVV---DRGHNIEKVVNVIKPMIKDGMIT 100 (127)
T ss_dssp TEEHHHHHHHHHHHTTCSCEEEEECSEEEC--------------CCCEEEEEEE---EEHHHHHHHHHHHTTTCSSSEEE
T ss_pred CcCHHHHHHHHHHHCCCCeEEEEcCcEEECCCCCEecceeeecCCCCCEEEEEE---cCHHHHHHHHHHHHHHhCCCEEE
Confidence 4458899999999999831211 112222 233334444455556899998887 36778888888888886666555
Q ss_pred EE
Q 025580 212 IG 213 (250)
Q Consensus 212 Ig 213 (250)
+-
T Consensus 101 ~e 102 (127)
T 2dcl_A 101 VE 102 (127)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 48
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=20.09 E-value=2.6e+02 Score=22.59 Aligned_cols=78 Identities=12% Similarity=-0.034 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCcccchhhhhhhhcCCCCCCEEEeecCCC----C-----C-HHHHHHHHHHhcc
Q 025580 134 APELAKRVKDLLKASGIKHVNEDRKRGLDHGAWVPLMLMYPEADIPVCQLSVQMH----H-----T-GTYHYNIGKALAP 203 (250)
Q Consensus 134 ~~~LA~~i~~~l~~~Gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~vS~~~~----~-----~-~~~~~~LG~aL~~ 203 (250)
+++--....+.+.+.++|-+-. .+.+.....+..-...+..+|||-+.-... . | .+.-+..++.|.+
T Consensus 54 ~~~~~~~~i~~l~~~~vdgiii---~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~ 130 (304)
T 3gbv_A 54 DYNSFVATSQAVIEEQPDGVMF---APTVPQYTKGFTDALNELGIPYIYIDSQIKDAPPLAFFGQNSHQSGYFAARMLML 130 (304)
T ss_dssp CHHHHHHHHHHHHTTCCSEEEE---CCSSGGGTHHHHHHHHHHTCCEEEESSCCTTSCCSEEEECCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCEEEE---CCCChHHHHHHHHHHHHCCCeEEEEeCCCCCCCceEEEecChHHHHHHHHHHHHH
Confidence 4444445556666666652111 223333333322222334678777654221 1 2 3445677777777
Q ss_pred ccc--CCeEEEEe
Q 025580 204 LKE--EGVLIIGS 214 (250)
Q Consensus 204 l~d--erVlIIgS 214 (250)
... ++|++|+.
T Consensus 131 ~g~~~~~i~~i~~ 143 (304)
T 3gbv_A 131 LAVNDREIVIFRK 143 (304)
T ss_dssp HSTTCSEEEEEEE
T ss_pred HhCCCCeEEEEEe
Confidence 654 88999974
Done!