BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025583
(250 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O22315|SRSF1_ARATH Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1
SV=1
Length = 303
Score = 241 bits (616), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 121/176 (68%), Positives = 138/176 (78%), Gaps = 10/176 (5%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSS 62
YGP+V IDLK+PPRPPGYAF+EF+D RDAEDAI GRDGY+FDG+RLRVELAHGGRR S
Sbjct: 30 YGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRRSSDD 89
Query: 63 MDRYSSYSSGGSRGV---------SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQ 113
+ G SRRS++RVLVTGLPSSASWQDLKDHMR+ GDVCFSQ
Sbjct: 90 TRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQ 149
Query: 114 VFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRRSYSRSP 169
V+RD G TG+VDYT Y+DMKYA++KLD +EFRNAFS YVRVREYDSR+ SRSP
Sbjct: 150 VYRDARGTTGVVDYTCYEDMKYALKKLDDTEFRNAFSNGYVRVREYDSRKD-SRSP 204
>sp|Q5ZML3|SRSF1_CHICK Serine/arginine-rich splicing factor 1 OS=Gallus gallus GN=SRSF1
PE=1 SV=3
Length = 257
Score = 151 bits (382), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 94/183 (51%), Positives = 116/183 (63%), Gaps = 15/183 (8%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSS 62
YG I DIDLK P +AF+EFED RDAEDA+ GRDGY++DGYRLRVE GR
Sbjct: 39 YGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRG 98
Query: 63 MDRYSSYSSGGSRGV--SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG 120
+ R SRRS+YRV+V+GLP S SWQDLKDHMR AGDVC++ VFRD
Sbjct: 99 GGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--- 155
Query: 121 MTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVREYDSRRSYSRSPSRSPYYSRSR 179
TG+V++ +DM YA+RKLD ++FR + +Y+RV+ RSP Y RSR
Sbjct: 156 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK---------VDGPRSPSYGRSR 206
Query: 180 SRS 182
SRS
Sbjct: 207 SRS 209
>sp|Q6NYA0|SRS1B_DANRE Serine/arginine-rich splicing factor 1B OS=Danio rerio GN=srsf1b
PE=2 SV=1
Length = 245
Score = 144 bits (362), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 84/158 (53%), Positives = 106/158 (67%), Gaps = 6/158 (3%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSS 62
YG I DIDLK P +AF+EFED RDAEDA+ GRDGY++DGYRLRVE GR
Sbjct: 38 YGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGGGRG 97
Query: 63 MDRYSSYSSGGSR--GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG 120
+ R SRRS+YRV+V+GLP S SWQDLKDHMR AGDVC++ VFRD
Sbjct: 98 GGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--- 154
Query: 121 MTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 157
TG+V++ +DM YA+RKLD ++FR + +Y+RV+
Sbjct: 155 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 192
>sp|Q5R7H2|SRSF1_PONAB Serine/arginine-rich splicing factor 1 OS=Pongo abelii GN=SRSF1
PE=2 SV=3
Length = 248
Score = 140 bits (353), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 82/158 (51%), Positives = 105/158 (66%), Gaps = 6/158 (3%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSS 62
YG I DIDLK P +AF+EFED RDAEDA+ GRDGY++DGYRLRVE GR
Sbjct: 39 YGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRG 98
Query: 63 MDRYSSYSSGGSRGV--SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG 120
+ R SRRS+ RV+V+GLP S SWQDLKDHMR AGDVC++ V+RD
Sbjct: 99 GGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--- 155
Query: 121 MTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 157
TG+V++ +DM YA+RKLD ++FR + +Y+RV+
Sbjct: 156 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
>sp|Q3YLA6|SRSF1_PIG Serine/arginine-rich splicing factor 1 OS=Sus scrofa GN=SRSF1 PE=2
SV=3
Length = 248
Score = 140 bits (353), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 82/158 (51%), Positives = 105/158 (66%), Gaps = 6/158 (3%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSS 62
YG I DIDLK P +AF+EFED RDAEDA+ GRDGY++DGYRLRVE GR
Sbjct: 39 YGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRG 98
Query: 63 MDRYSSYSSGGSRGV--SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG 120
+ R SRRS+ RV+V+GLP S SWQDLKDHMR AGDVC++ V+RD
Sbjct: 99 GGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--- 155
Query: 121 MTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 157
TG+V++ +DM YA+RKLD ++FR + +Y+RV+
Sbjct: 156 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
>sp|Q6PDM2|SRSF1_MOUSE Serine/arginine-rich splicing factor 1 OS=Mus musculus GN=Srsf1
PE=1 SV=3
Length = 248
Score = 140 bits (353), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 82/158 (51%), Positives = 105/158 (66%), Gaps = 6/158 (3%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSS 62
YG I DIDLK P +AF+EFED RDAEDA+ GRDGY++DGYRLRVE GR
Sbjct: 39 YGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRG 98
Query: 63 MDRYSSYSSGGSRGV--SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG 120
+ R SRRS+ RV+V+GLP S SWQDLKDHMR AGDVC++ V+RD
Sbjct: 99 GGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--- 155
Query: 121 MTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 157
TG+V++ +DM YA+RKLD ++FR + +Y+RV+
Sbjct: 156 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
>sp|Q07955|SRSF1_HUMAN Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1
PE=1 SV=2
Length = 248
Score = 140 bits (353), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 82/158 (51%), Positives = 105/158 (66%), Gaps = 6/158 (3%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSS 62
YG I DIDLK P +AF+EFED RDAEDA+ GRDGY++DGYRLRVE GR
Sbjct: 39 YGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRG 98
Query: 63 MDRYSSYSSGGSRGV--SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG 120
+ R SRRS+ RV+V+GLP S SWQDLKDHMR AGDVC++ V+RD
Sbjct: 99 GGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--- 155
Query: 121 MTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 157
TG+V++ +DM YA+RKLD ++FR + +Y+RV+
Sbjct: 156 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
>sp|Q0VCY7|SRSF1_BOVIN Serine/arginine-rich splicing factor 1 OS=Bos taurus GN=SRSF1 PE=2
SV=1
Length = 248
Score = 140 bits (353), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 82/158 (51%), Positives = 105/158 (66%), Gaps = 6/158 (3%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSS 62
YG I DIDLK P +AF+EFED RDAEDA+ GRDGY++DGYRLRVE GR
Sbjct: 39 YGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRG 98
Query: 63 MDRYSSYSSGGSRGV--SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG 120
+ R SRRS+ RV+V+GLP S SWQDLKDHMR AGDVC++ V+RD
Sbjct: 99 GGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--- 155
Query: 121 MTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 157
TG+V++ +DM YA+RKLD ++FR + +Y+RV+
Sbjct: 156 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
>sp|Q7SXP4|SRS1A_DANRE Serine/arginine-rich splicing factor 1A OS=Danio rerio GN=srsf1a
PE=2 SV=2
Length = 257
Score = 139 bits (349), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/168 (50%), Positives = 106/168 (63%), Gaps = 16/168 (9%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSS 62
YG I DIDLK P +AF+EFED RDAEDA+ RDGY++DGYRLRVE GR
Sbjct: 38 YGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGYDYDGYRLRVEFPRSGRGMGRG 97
Query: 63 MDRYSSYSSGGSRGV------------SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVC 110
GG G SRRS+YRV+V+GLP S SWQDLKDHMR AGDVC
Sbjct: 98 GFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVC 157
Query: 111 FSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 157
++ VFRD TG+V++ +DM YA+RKLD ++FR + +Y+RV+
Sbjct: 158 YADVFRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 202
>sp|Q6DII2|SRSF1_XENTR Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis
GN=srsf1 PE=2 SV=1
Length = 267
Score = 137 bits (345), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 107/177 (60%), Gaps = 25/177 (14%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL---------- 52
YG I DIDLK P +AF+EFED RDAEDA+ GRDGY++DGYRLRVE
Sbjct: 39 YGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGAGGR 98
Query: 53 -------AHGGRRHSSSMDRYSSYSSGGSRG----VSRRSDYRVLVTGLPSSASWQDLKD 101
GG G RG SRRS+YRV+V+GLP S SWQDLKD
Sbjct: 99 GGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVVVSGLPPSGSWQDLKD 158
Query: 102 HMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 157
HMR AGDVC++ VFRD TG+V++ +DM YA+RKLD ++FR + +Y+RV+
Sbjct: 159 HMREAGDVCYADVFRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 212
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis
elegans GN=rsp-3 PE=1 SV=2
Length = 258
Score = 135 bits (339), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 105/171 (61%), Gaps = 21/171 (12%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE----------- 51
YG I +D+K R P +AF+EFED+RDAEDA+R RDGY FDG R+RVE
Sbjct: 32 YGRIKYVDIK-SGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRGPG 90
Query: 52 ---LAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD 108
L GG G RR+ YRV+V GLP + SWQDLKDHMR AGD
Sbjct: 91 GRPLQDGGDHRGGDFRGGRGGGR--GGGPQRRTGYRVIVEGLPPTGSWQDLKDHMRDAGD 148
Query: 109 VCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVRE 158
VC++ V RD TG+V++T Y+D+KYA+RKLD ++FR + +Y+RVRE
Sbjct: 149 VCYADVARD---GTGVVEFTRYEDVKYAVRKLDDTKFRSHEGETAYIRVRE 196
>sp|Q9D0B0|SRSF9_MOUSE Serine/arginine-rich splicing factor 9 OS=Mus musculus GN=Srsf9
PE=1 SV=1
Length = 222
Score = 128 bits (321), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 80/158 (50%), Positives = 104/158 (65%), Gaps = 16/158 (10%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL--AHGGRRHS 60
YG I +I+LK +AF+ FED RDAEDAI GR+GY++ RLRVE +GGR
Sbjct: 38 YGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGGR--- 94
Query: 61 SSMDRYSSYSSGGSRGV-SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG 119
+ G G +RRSD+RVLV+GLP S SWQDLKDHMR AGDVC++ V +D
Sbjct: 95 ------GGWPRGARNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKD-- 146
Query: 120 GMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRV 156
GM G+V+Y +DM+YA+RKLD ++FR + SY+RV
Sbjct: 147 GM-GMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRV 183
>sp|Q5PPI1|SRSF9_RAT Serine/arginine-rich splicing factor 9 OS=Rattus norvegicus
GN=Srsf9 PE=1 SV=1
Length = 221
Score = 127 bits (320), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 80/157 (50%), Positives = 103/157 (65%), Gaps = 14/157 (8%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL--AHGGRRHS 60
YG I +I+LK +AF+ FED RDAEDAI GR+GY++ RLRVE A+GGR
Sbjct: 37 YGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRAYGGRGGW 96
Query: 61 SSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG 120
R +RRSD+RVLV+GLP S SWQDLKDHMR AGDVC++ V +D G
Sbjct: 97 PRASRNGP--------PTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKD--G 146
Query: 121 MTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRV 156
M G+V+Y +DM+YA+RKLD ++FR + SY+RV
Sbjct: 147 M-GMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRV 182
>sp|Q13242|SRSF9_HUMAN Serine/arginine-rich splicing factor 9 OS=Homo sapiens GN=SRSF9
PE=1 SV=1
Length = 221
Score = 121 bits (304), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 99/155 (63%), Gaps = 10/155 (6%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSS 62
YG I +I+LK +AF+ FED RDAEDAI GR+GY++ RLRVE +
Sbjct: 37 YGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPR------TY 90
Query: 63 MDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMT 122
R G + +RRSD+RVLV+GLP S SWQDLKDHMR AGDVC++ V +D GM
Sbjct: 91 GGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGVGM- 149
Query: 123 GIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRV 156
V+Y +DM+YA+RKLD ++FR + SY+RV
Sbjct: 150 --VEYLRKEDMEYALRKLDDTKFRSHEGETSYIRV 182
>sp|Q8VE97|SRSF4_MOUSE Serine/arginine-rich splicing factor 4 OS=Mus musculus GN=Srsf4
PE=2 SV=1
Length = 489
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 89/147 (60%), Gaps = 10/147 (6%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSS 62
YG I+++DLK GY F+EF+D RDA+DA+ +G + G R+ VE A G RR S
Sbjct: 25 YGKILEVDLK-----NGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSY 79
Query: 63 MDRYSSYS---SGGSR-GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR 118
S Y SG + G R++YR++V L S SWQDLKD+MR+AG+V ++ + R
Sbjct: 80 GSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGR 139
Query: 119 GGMTGIVDYTSYDDMKYAIRKLDRSEF 145
G++++ SY DMK A+ KLD +E
Sbjct: 140 KN-EGVIEFVSYSDMKRALEKLDGTEV 165
>sp|Q08170|SRSF4_HUMAN Serine/arginine-rich splicing factor 4 OS=Homo sapiens GN=SRSF4
PE=1 SV=2
Length = 494
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 89/147 (60%), Gaps = 10/147 (6%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSS 62
YG I+++DLK GY F+EF+D RDA+DA+ +G + G R+ VE A G RR S
Sbjct: 25 YGKILEVDLK-----NGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSY 79
Query: 63 MDRYSSYS---SGGSR-GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR 118
S Y SG + G R++YR++V L S SWQDLKD+MR+AG+V ++ + R
Sbjct: 80 GSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGR 139
Query: 119 GGMTGIVDYTSYDDMKYAIRKLDRSEF 145
G++++ SY DMK A+ KLD +E
Sbjct: 140 KN-EGVIEFVSYSDMKRALEKLDGTEV 165
>sp|Q13247|SRSF6_HUMAN Serine/arginine-rich splicing factor 6 OS=Homo sapiens GN=SRSF6
PE=1 SV=2
Length = 344
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 88/153 (57%), Gaps = 16/153 (10%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH--- 59
YG ++++DLK GY F+EFED RDA+DA+ +G G R+ VE A G RR
Sbjct: 25 YGRLLEVDLK-----NGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGPRRDRDG 79
Query: 60 ------SSSMDRYSSYSSGGSR-GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFS 112
S S +SG + G R++YR++V L S SWQDLKD MR+AG+V ++
Sbjct: 80 YSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSSRCSWQDLKDFMRQAGEVTYA 139
Query: 113 QVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 145
++R G++++ SY DMK A+ KLD +E
Sbjct: 140 DAHKERTN-EGVIEFRSYSDMKRALDKLDGTEI 171
>sp|P26686|SRR55_DROME Serine-arginine protein 55 OS=Drosophila melanogaster GN=B52 PE=1
SV=4
Length = 376
Score = 94.7 bits (234), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 85/161 (52%), Gaps = 24/161 (14%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSS 62
YG DI +K GY F+EFEDYRDA+DA+ +G G R+ VE A G R S+
Sbjct: 27 YGRTRDILIK-----NGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGTARGSNR 81
Query: 63 MDRYS-------------SYSSGGSRGVSR-----RSDYRVLVTGLPSSASWQDLKDHMR 104
+ + SR SR R++YR++V L S SWQDLKD+MR
Sbjct: 82 DRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEYRLIVENLSSRVSWQDLKDYMR 141
Query: 105 RAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 145
+AG+V ++ + R G+V++ S DMK AI KLD +E
Sbjct: 142 QAGEVTYADAHKQRRN-EGVVEFASLSDMKTAIEKLDDTEL 181
>sp|Q3B7L6|SRSF6_BOVIN Serine/arginine-rich splicing factor 6 OS=Bos taurus GN=SRSF6 PE=2
SV=1
Length = 345
Score = 94.0 bits (232), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 87/153 (56%), Gaps = 16/153 (10%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH--- 59
YG ++ IDLK GY F+EFED RDA+DA+ +G G R+ VE A G RR
Sbjct: 25 YGRLLGIDLK-----NGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGPRRDRDG 79
Query: 60 ------SSSMDRYSSYSSGGSR-GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFS 112
S S +SG + G R+++R++V L S SWQDLKD MR+AG+V ++
Sbjct: 80 YSYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLSSRCSWQDLKDFMRQAGEVTYA 139
Query: 113 QVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 145
++R G++++ SY DMK A+ KLD +E
Sbjct: 140 DAHKERTN-EGVIEFRSYSDMKRALDKLDGTEI 171
>sp|Q09167|SRSF5_RAT Serine/arginine-rich splicing factor 5 OS=Rattus norvegicus
GN=Srsf5 PE=2 SV=1
Length = 269
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 81/149 (54%), Gaps = 12/149 (8%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSS 62
YG I DIDLK G+ F+EFED RDA+DA+ DG R+ +E A R
Sbjct: 27 YGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRGGRG 81
Query: 63 MDRYSS-YSSGGSRGVSR-----RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFR 116
RYS +SS R R R++ R++V L S SWQDLKD MR+AG+V F+ R
Sbjct: 82 RGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHR 141
Query: 117 DRGGMTGIVDYTSYDDMKYAIRKLDRSEF 145
+ G+V++ SY D+K AI KL E
Sbjct: 142 PKLN-EGVVEFASYGDLKNAIEKLSGKEI 169
>sp|O35326|SRSF5_MOUSE Serine/arginine-rich splicing factor 5 OS=Mus musculus GN=Srsf5
PE=1 SV=2
Length = 269
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 81/149 (54%), Gaps = 12/149 (8%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSS 62
YG I DIDLK G+ F+EFED RDA+DA+ DG R+ +E A R
Sbjct: 27 YGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRGGRG 81
Query: 63 MDRYSS-YSSGGSRGVSR-----RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFR 116
RYS +SS R R R++ R++V L S SWQDLKD MR+AG+V F+ R
Sbjct: 82 RGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHR 141
Query: 117 DRGGMTGIVDYTSYDDMKYAIRKLDRSEF 145
+ G+V++ SY D+K AI KL E
Sbjct: 142 PKLN-EGVVEFASYGDLKNAIEKLSGKEI 169
>sp|Q13243|SRSF5_HUMAN Serine/arginine-rich splicing factor 5 OS=Homo sapiens GN=SRSF5
PE=1 SV=1
Length = 272
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 81/149 (54%), Gaps = 12/149 (8%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSS 62
YG I DIDLK G+ F+EFED RDA+DA+ DG R+ +E A R
Sbjct: 27 YGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRGGRG 81
Query: 63 MDRYSS-YSSGGSRGVSR-----RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFR 116
RYS +SS R R R++ R++V L S SWQDLKD MR+AG+V F+ R
Sbjct: 82 RGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHR 141
Query: 117 DRGGMTGIVDYTSYDDMKYAIRKLDRSEF 145
+ G+V++ SY D+K AI KL E
Sbjct: 142 PKLN-EGVVEFASYGDLKNAIEKLSGKEI 169
>sp|P78814|SRP2_SCHPO Pre-mRNA-splicing factor srp2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=srp2 PE=1 SV=2
Length = 365
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 70/139 (50%), Gaps = 10/139 (7%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSS 62
YG I+D L G+ F+E ED RDA D + G F G R+ VE A
Sbjct: 27 YGQILDCKLMN-----GFGFVEVEDARDARDIVNDFQGKEFMGSRIVVEPAR----GERR 77
Query: 63 MDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMT 122
S+ RR+ +R++V L SWQDLKD MR+AG+ F+ R+ G
Sbjct: 78 RRENFRESAASKYPRPRRTGFRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPG-A 136
Query: 123 GIVDYTSYDDMKYAIRKLD 141
G+V++++ +DM+ A+ L+
Sbjct: 137 GVVEFSTEEDMRNALTSLN 155
>sp|Q23120|RSP2_CAEEL Probable splicing factor, arginine/serine-rich 2 OS=Caenorhabditis
elegans GN=rsp-2 PE=3 SV=1
Length = 281
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 81/151 (53%), Gaps = 19/151 (12%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE-----LAHGGR 57
YG + D+ +K G+ F++F+D RDA+DA+ +G G R+ +E + +
Sbjct: 25 YGKLSDVIMK-----NGFGFVDFQDQRDADDAVHDLNGKELCGERVILEFPRRKVGYNEE 79
Query: 58 RHSSSM-DRYSSYSSGGSRGVSRR------SDYRVLVTGLPSSASWQDLKDHMRRAG-DV 109
R S R ++ GG R S R + +R+++ L + SWQD+KDH+R+ G +
Sbjct: 80 RSGSGFRGREPTFRKGGERQFSNRYSRPCSTRFRLVIDNLSTRYSWQDIKDHIRKLGIEP 139
Query: 110 CFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 140
+S+ + R IV +TS+DD++ A+ KL
Sbjct: 140 TYSEAHK-RNVNQAIVCFTSHDDLRDAMNKL 169
>sp|Q8BL97|SRSF7_MOUSE Serine/arginine-rich splicing factor 7 OS=Mus musculus GN=Srsf7
PE=1 SV=1
Length = 267
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHS 60
YGP+ + I PPG+AF+EFED RDAEDA+RG DG G R+RVEL+ G R S
Sbjct: 63 YGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRS 118
>sp|Q16629|SRSF7_HUMAN Serine/arginine-rich splicing factor 7 OS=Homo sapiens GN=SRSF7
PE=1 SV=1
Length = 238
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHS 60
YGP+ + I PPG+AF+EFED RDAEDA+RG DG G R+RVEL+ G R S
Sbjct: 34 YGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRS 89
>sp|Q3T106|SRSF7_BOVIN Serine/arginine-rich splicing factor 7 OS=Bos taurus GN=SRSF7
PE=2 SV=1
Length = 235
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHS 60
YGP+ + I PPG+AF+EFED RDAEDA+RG DG G R+RVEL+ G R S
Sbjct: 34 YGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRS 89
>sp|Q23121|RSP1_CAEEL Probable splicing factor, arginine/serine-rich 1 OS=Caenorhabditis
elegans GN=rsp-1 PE=3 SV=1
Length = 312
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 36/168 (21%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE----------- 51
YG I D+ LK G+ F+EF+D RDAEDA+ +G G R+ ++
Sbjct: 26 YGQIRDVLLK-----NGFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYSKPRGGGGDR 80
Query: 52 ------------LAHGGRRHSSSMDRYSSYSSGGSRGVSR-----RSDYRVLVTGLPSSA 94
++ DR+ Y G R SR + +RV+V L S
Sbjct: 81 GGFGGGGRGGARVSSYSGGGGGGRDRFDRYDRGPPRRESRYGRPYSTRHRVVVENLSSRI 140
Query: 95 SWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 141
SWQDLKD +RR G + +++ + ++ + + D+K I K D
Sbjct: 141 SWQDLKDQVRRQGVEPTYAEAHKRPN--EALLCFATPSDLKRCIEKCD 186
>sp|P84104|SRSF3_MOUSE Serine/arginine-rich splicing factor 3 OS=Mus musculus GN=Srsf3
PE=1 SV=1
Length = 164
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58
YGP+ + + PPG+AF+EFED RDA DA+R DG G R+RVEL++G +R
Sbjct: 33 YGPLRSV--WVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKR 86
>sp|P84103|SRSF3_HUMAN Serine/arginine-rich splicing factor 3 OS=Homo sapiens GN=SRSF3
PE=1 SV=1
Length = 164
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58
YGP+ + + PPG+AF+EFED RDA DA+R DG G R+RVEL++G +R
Sbjct: 33 YGPLRSV--WVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKR 86
>sp|Q3SZR8|SRSF3_BOVIN Serine/arginine-rich splicing factor 3 OS=Bos taurus GN=SRSF3
PE=2 SV=1
Length = 164
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58
YGP+ + + PPG+AF+EFED RDA DA+R DG G R+RVEL++G +R
Sbjct: 33 YGPLRSV--WVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKR 86
>sp|Q01560|NOP3_YEAST Nucleolar protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=NPL3 PE=1 SV=1
Length = 414
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 31/146 (21%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSS 62
+GP+ ++ + G+AF+EFE+ A AI G +F L V
Sbjct: 148 FGPMKEVKILN-----GFAFVEFEEAESAAKAIEEVHGKSFANQPLEV------------ 190
Query: 63 MDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQV-FRDRGG 120
YS + +R YR+ + LP SWQDLKD R + FS V RD G
Sbjct: 191 --VYSKLPA-------KR--YRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDG 239
Query: 121 MTGIVDYTSYDDMKYAIRKLDRSEFR 146
TG +++ S + + A+ +L+ EFR
Sbjct: 240 -TGALEFPSEEILVEALERLNNIEFR 264
>sp|Q02427|RBP1_DROME RNA-binding protein 1 OS=Drosophila melanogaster GN=Rbp1 PE=2
SV=3
Length = 144
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 52
YGP+ ++ + PPG+AF+EFED RDAEDA R DG G R+RVE+
Sbjct: 34 YGPLRNV--WVARNPPGFAFVEFEDRRDAEDATRALDGTRCCGTRIRVEM 81
>sp|Q9R0U0|SRS10_MOUSE Serine/arginine-rich splicing factor 10 OS=Mus musculus GN=Srsf10
PE=1 SV=2
Length = 262
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 3 YGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 59
YGPIVD+ + + RP G+A+++FED RDAEDA+ D G ++ ++ A G R+
Sbjct: 33 YGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKT 92
Query: 60 SSSM 63
+ M
Sbjct: 93 PNQM 96
>sp|O75494|SRS10_HUMAN Serine/arginine-rich splicing factor 10 OS=Homo sapiens GN=SRSF10
PE=1 SV=1
Length = 262
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 3 YGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 59
YGPIVD+ + + RP G+A+++FED RDAEDA+ D G ++ ++ A G R+
Sbjct: 33 YGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKT 92
Query: 60 SSSM 63
+ M
Sbjct: 93 PNQM 96
>sp|Q18409|RSP6_CAEEL Probable splicing factor, arginine/serine-rich 6
OS=Caenorhabditis elegans GN=rsp-6 PE=3 SV=1
Length = 179
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 29/38 (76%)
Query: 16 RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 53
RPPG+AF+E++D RDAEDA+R DG G R RVEL+
Sbjct: 37 RPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>sp|P92964|RSP31_ARATH Arginine/serine-rich-splicing factor RSP31 OS=Arabidopsis thaliana
GN=RSP31 PE=1 SV=2
Length = 264
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 86/204 (42%), Gaps = 27/204 (13%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY---RLRVELAHGGRRH 59
YG + +D+K GYAF+ FED RDAEDAIR D + F GY RL VE A G R
Sbjct: 25 YGRVDRVDMKS-----GYAFVYFEDERDAEDAIRKLDNFPF-GYEKRRLSVEWAKGER-- 76
Query: 60 SSSMDRYSSYSSGGSRGVSRRSDYRVL--VTGLPSSASWQDLKDHMRRAGDVCFSQVFRD 117
G ++ S + L + P D++ H G V ++ R+
Sbjct: 77 --------GRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRN 128
Query: 118 RGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR--RSYSRSPSRSPYY 175
V + + +D A+ RS+ + +++ D R R+ RSP RS
Sbjct: 129 ----FSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDERDDRNGGRSPRRSLSP 184
Query: 176 SRSRSRSPYYSRSRSPSRSWSYSP 199
R SP Y R SP + SP
Sbjct: 185 VYRRRPSPDYGRRPSPGQGRRPSP 208
>sp|Q8WXF0|SRS12_HUMAN Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12
PE=2 SV=1
Length = 261
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 3 YGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 59
YGPIVD+ + + RP G+A+++FED RDAEDA+ + G ++ ++ A G R+
Sbjct: 33 YGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKT 92
Query: 60 SSSM 63
M
Sbjct: 93 PGQM 96
>sp|Q9P3U1|YKX5_SCHPO Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=4 SV=3
Length = 464
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 10/132 (7%)
Query: 19 GYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVS 78
G A +E+ +A AI+ F G R+ R ++ S S S G
Sbjct: 118 GCAIIEYSTAEEARTAIKTLSNQKFMG---RLVYIREDREQNARFGSSSVSPSASSNGKD 174
Query: 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAG-----DVCFSQVFRDRGGMTGIVDYTSYDDM 133
D ++ V LP + WQDLKD R+AG D+ +Q R RG GIV +S +
Sbjct: 175 SEPDRQLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRG--IGIVVMSSMKEA 232
Query: 134 KYAIRKLDRSEF 145
+AI+ L ++F
Sbjct: 233 MHAIQMLHNTDF 244
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMT---GIVDYTSYDDMKYA 136
+ + RV V L W +LK+ M + G+V ++ G++ I++Y++ ++ + A
Sbjct: 74 QQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTA 133
Query: 137 IRKLDRSEF 145
I+ L +F
Sbjct: 134 IKTLSNQKF 142
>sp|Q10021|RSP5_CAEEL Probable splicing factor, arginine/serine-rich 5
OS=Caenorhabditis elegans GN=rsp-5 PE=3 SV=3
Length = 208
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 7/55 (12%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVELAHG 55
YG I +I +K G+AF++FED RDAEDA DG +G RL VE+A G
Sbjct: 25 YGKINNISMKY-----GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMARG 74
>sp|Q8VYA5|RSZ33_ARATH Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis
thaliana GN=RS2Z33 PE=1 SV=1
Length = 290
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSS 62
YG + D+D+K YAF+EF D RDA+DA DG +FDG R+ VE + G R S
Sbjct: 34 YGRVRDVDMKR-----DYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSRGAPRGSRD 88
Query: 63 MD 64
D
Sbjct: 89 FD 90
>sp|O81126|RZP22_ARATH Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis
thaliana GN=RSZ22 PE=1 SV=1
Length = 200
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 29/40 (72%), Gaps = 4/40 (10%)
Query: 16 RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 55
RPPGYAFL+FED RDA DAIR DG N G+ RVE +H
Sbjct: 36 RPPGYAFLDFEDPRDARDAIRALDGKN--GW--RVEQSHN 71
>sp|P92965|RSP40_ARATH Arginine/serine-rich-splicing factor RSP40 OS=Arabidopsis thaliana
GN=RSP40 PE=1 SV=2
Length = 350
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 107/285 (37%), Gaps = 70/285 (24%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF--DGYRLRVELAHGGRRHS 60
YG + +D+K G+AF+ ED RDAEDAIR D + F G RLRVE R
Sbjct: 25 YGKVERVDMKA-----GFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSER--- 76
Query: 61 SSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG 120
D+ S S S R S ++ + +DL+ H G + ++ R+
Sbjct: 77 -GGDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRN--- 132
Query: 121 MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRRS---------------- 164
+ Y + +D A+ + S+ + V++ D+R +
Sbjct: 133 -FAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGHSPERRRDRSPERRR 191
Query: 165 --------------YSRSPSRSPYYSRSRSRSPYYSRSRSPS---------------RSW 195
Y R S Y + R+ SP Y R RSPS R
Sbjct: 192 RSPSPYKRERGSPDYGRGASPVAAYRKERT-SPDYGRRRSPSPYKKSRRGSPEYGRDRRG 250
Query: 196 SYSPRSR---------SYSPRGKYSRRSPSLSPARSASQRSPSGS 231
+ SPR R S SP K R SP+ SP + S R+ G
Sbjct: 251 NDSPRRRERVASPTKYSRSPNNKRERMSPNHSPFKKESPRNGVGE 295
>sp|Q6K4N0|RSZ21_ORYSJ Serine/arginine-rich splicing factor RSZ21 OS=Oryza sativa subsp.
japonica GN=RSZP21 PE=2 SV=1
Length = 185
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 12/87 (13%)
Query: 13 IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL-----AHGGR-RHSSSMDRY 66
+ +PPG+AF++F+D RDAEDA+R DG N RVEL + GGR RH S
Sbjct: 33 VARKPPGFAFIDFDDKRDAEDALRDLDGKNG----WRVELSRNSSSRGGRDRHGGS--EM 86
Query: 67 SSYSSGGSRGVSRRSDYRVLVTGLPSS 93
Y G + +R R+ GL S
Sbjct: 87 KCYECGETGHFARECRLRIGPGGLGSG 113
>sp|Q9SJA6|RZ22A_ARATH Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis
thaliana GN=RSZ22A PE=1 SV=1
Length = 196
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 29/40 (72%), Gaps = 4/40 (10%)
Query: 16 RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 55
RPPGYAFL+FED RDA DAIR DG N G+ RVE +H
Sbjct: 36 RPPGYAFLDFEDSRDARDAIREVDGKN--GW--RVEQSHN 71
>sp|Q69KL9|RZ21A_ORYSJ Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa
subsp. japonica GN=RSZ21A PE=2 SV=1
Length = 185
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 13 IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSS 71
+ +PPG+AF++F+D RDA+DAIR DG N G+ RVEL+ DRY S S
Sbjct: 33 VARKPPGFAFIDFDDRRDAQDAIRDIDGKN--GW--RVELSRNASSGRGGRDRYGSSES 87
>sp|Q9BRL6|SRSF8_HUMAN Serine/arginine-rich splicing factor 8 OS=Homo sapiens GN=SRSF8
PE=1 SV=1
Length = 282
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 3 YGPIVDIDLKIPPR---PPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58
YG + D+ + P P G+AF+ F D RDA+DA DG DG LRV++A GRR
Sbjct: 37 YGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRR 95
>sp|Q5R1W5|SRSF2_PANTR Serine/arginine-rich splicing factor 2 OS=Pan troglodytes
GN=SRSF2 PE=2 SV=3
Length = 221
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%)
Query: 19 GYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57
G+AF+ F D RDAEDA+ DG DG LRV++A GR
Sbjct: 56 GFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 94
>sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2
PE=2 SV=1
Length = 221
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%)
Query: 19 GYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57
G+AF+ F D RDAEDA+ DG DG LRV++A GR
Sbjct: 56 GFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 94
>sp|Q9FYB7|RSZ32_ARATH Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis
thaliana GN=RS2Z32 PE=1 SV=1
Length = 284
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHS 60
YG + D+D+K YAF+EF D RDA+DA DG +FDG R+ VE + G R S
Sbjct: 34 YGRVRDVDMKR-----DYAFVEFSDPRDADDARYYLDGRDFDGSRITVEASRGAPRGS 86
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,642,841
Number of Sequences: 539616
Number of extensions: 4421145
Number of successful extensions: 26597
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 484
Number of HSP's that attempted gapping in prelim test: 15922
Number of HSP's gapped (non-prelim): 4968
length of query: 250
length of database: 191,569,459
effective HSP length: 115
effective length of query: 135
effective length of database: 129,513,619
effective search space: 17484338565
effective search space used: 17484338565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)