Query 025583
Match_columns 250
No_of_seqs 296 out of 2290
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 07:19:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025583.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025583hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 99.9 4.6E-26 1E-30 189.8 17.5 137 2-160 130-273 (346)
2 KOG0148 Apoptosis-promoting RN 99.9 1.6E-26 3.5E-31 177.9 13.0 141 2-148 85-228 (321)
3 KOG0105 Alternative splicing f 99.9 6.9E-25 1.5E-29 160.0 17.7 160 1-163 28-193 (241)
4 TIGR01645 half-pint poly-U bin 99.9 1.1E-24 2.4E-29 190.8 17.5 147 1-160 129-282 (612)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 4E-23 8.7E-28 175.0 18.0 138 1-160 25-169 (352)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 2.4E-22 5.2E-27 170.3 21.3 156 1-160 111-347 (352)
7 TIGR01622 SF-CC1 splicing fact 99.9 1.2E-22 2.7E-27 177.7 18.0 147 1-160 111-264 (457)
8 TIGR01628 PABP-1234 polyadenyl 99.9 6.3E-22 1.4E-26 177.2 16.6 136 2-159 23-164 (562)
9 KOG0109 RNA-binding protein LA 99.9 2.7E-22 5.8E-27 156.2 9.9 122 2-158 25-146 (346)
10 KOG0117 Heterogeneous nuclear 99.9 1.9E-21 4.2E-26 159.4 14.8 151 2-160 106-329 (506)
11 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 7.6E-21 1.6E-25 166.7 19.5 146 1-148 298-464 (481)
12 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 7.6E-21 1.6E-25 166.7 19.3 147 1-160 24-172 (481)
13 KOG0107 Alternative splicing f 99.9 1.7E-20 3.7E-25 136.0 16.4 79 80-163 8-86 (195)
14 TIGR01628 PABP-1234 polyadenyl 99.9 6.5E-21 1.4E-25 170.7 16.7 144 1-159 110-258 (562)
15 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2.9E-20 6.3E-25 164.9 18.6 149 4-160 212-373 (509)
16 KOG0145 RNA-binding protein EL 99.9 4.2E-21 9.1E-26 147.5 11.3 138 3-162 65-209 (360)
17 TIGR01648 hnRNP-R-Q heterogene 99.9 2.8E-20 6E-25 163.0 17.2 125 14-161 178-306 (578)
18 TIGR01642 U2AF_lg U2 snRNP aux 99.8 8.9E-20 1.9E-24 161.8 18.6 153 2-158 318-498 (509)
19 KOG0106 Alternative splicing f 99.8 6.6E-21 1.4E-25 145.6 9.3 143 1-156 23-165 (216)
20 KOG0124 Polypyrimidine tract-b 99.8 7.1E-21 1.5E-25 152.6 7.5 142 2-156 136-284 (544)
21 KOG0127 Nucleolar protein fibr 99.8 2.3E-19 5.1E-24 150.6 16.3 148 1-148 139-368 (678)
22 KOG0131 Splicing factor 3b, su 99.8 6.6E-20 1.4E-24 133.8 11.3 133 2-157 32-172 (203)
23 TIGR01622 SF-CC1 splicing fact 99.8 4.4E-19 9.6E-24 155.3 18.9 154 1-158 208-444 (457)
24 KOG0127 Nucleolar protein fibr 99.8 1.3E-19 2.7E-24 152.2 13.6 156 1-156 27-194 (678)
25 KOG0144 RNA-binding protein CU 99.8 1.3E-19 2.9E-24 148.1 10.8 141 2-163 57-207 (510)
26 KOG4207 Predicted splicing fac 99.8 1.6E-18 3.4E-23 129.1 13.9 77 77-157 8-88 (256)
27 TIGR01648 hnRNP-R-Q heterogene 99.8 1.1E-18 2.4E-23 153.0 14.1 121 1-147 80-211 (578)
28 KOG0110 RNA-binding protein (R 99.8 8.4E-19 1.8E-23 151.4 12.1 136 2-148 538-683 (725)
29 KOG0123 Polyadenylate-binding 99.8 5.4E-18 1.2E-22 142.3 15.0 128 1-159 20-150 (369)
30 KOG0145 RNA-binding protein EL 99.8 1.1E-17 2.5E-22 128.7 12.5 154 1-158 149-354 (360)
31 KOG0123 Polyadenylate-binding 99.7 7.5E-17 1.6E-21 135.5 12.3 144 1-161 98-245 (369)
32 KOG0147 Transcriptional coacti 99.7 2E-17 4.3E-22 139.4 8.0 146 1-157 201-353 (549)
33 KOG4206 Spliceosomal protein s 99.7 2.9E-16 6.4E-21 119.1 13.1 145 1-146 35-209 (221)
34 KOG4207 Predicted splicing fac 99.7 2.4E-16 5.1E-21 117.5 10.6 55 2-56 36-93 (256)
35 KOG0107 Alternative splicing f 99.6 1.6E-14 3.5E-19 105.2 13.2 56 1-58 32-87 (195)
36 KOG0147 Transcriptional coacti 99.6 4.7E-15 1E-19 125.3 12.0 147 2-149 301-519 (549)
37 PLN03134 glycine-rich RNA-bind 99.6 4.7E-14 1E-18 103.7 12.4 80 79-162 31-114 (144)
38 TIGR01645 half-pint poly-U bin 99.6 3.3E-13 7.2E-18 119.1 19.2 55 1-55 226-283 (612)
39 KOG4205 RNA-binding protein mu 99.6 1.2E-14 2.6E-19 118.3 8.8 132 1-148 28-166 (311)
40 KOG0144 RNA-binding protein CU 99.6 4.5E-14 9.8E-19 116.1 11.8 74 82-159 424-501 (510)
41 KOG0146 RNA-binding protein ET 99.6 7.8E-14 1.7E-18 108.1 12.2 76 80-159 283-362 (371)
42 PF00076 RRM_1: RNA recognitio 99.5 3.4E-13 7.4E-18 86.8 9.4 64 85-148 1-67 (70)
43 KOG1457 RNA binding protein (c 99.5 7.5E-13 1.6E-17 100.1 11.4 131 17-147 76-275 (284)
44 KOG0113 U1 small nuclear ribon 99.5 4.5E-12 9.8E-17 99.9 15.4 75 79-157 98-176 (335)
45 PF13893 RRM_5: RNA recognitio 99.5 4.1E-13 9E-18 82.6 7.8 51 1-53 6-56 (56)
46 KOG1190 Polypyrimidine tract-b 99.5 3.3E-12 7.2E-17 104.5 15.0 151 3-158 322-487 (492)
47 KOG4211 Splicing factor hnRNP- 99.5 2E-12 4.2E-17 108.3 13.6 140 5-159 35-179 (510)
48 PLN03134 glycine-rich RNA-bind 99.4 2.2E-12 4.7E-17 94.9 9.8 59 1-59 56-117 (144)
49 KOG0125 Ataxin 2-binding prote 99.4 1.1E-12 2.3E-17 104.6 8.6 79 78-160 92-172 (376)
50 KOG4676 Splicing factor, argin 99.4 3.5E-13 7.5E-18 109.6 4.0 141 3-145 31-213 (479)
51 TIGR01659 sex-lethal sex-letha 99.4 4.6E-12 9.9E-17 106.1 10.8 77 78-158 103-183 (346)
52 PLN03120 nucleic acid binding 99.4 6.9E-12 1.5E-16 98.9 10.3 74 82-160 4-78 (260)
53 KOG4212 RNA-binding protein hn 99.4 4.9E-11 1.1E-15 98.6 15.3 146 2-147 68-283 (608)
54 KOG0130 RNA-binding protein RB 99.4 5.2E-12 1.1E-16 88.2 8.2 70 79-148 69-142 (170)
55 PF14259 RRM_6: RNA recognitio 99.3 1.6E-11 3.5E-16 79.0 9.4 64 85-148 1-67 (70)
56 KOG0105 Alternative splicing f 99.3 4.7E-12 1E-16 93.2 7.6 79 81-163 5-84 (241)
57 smart00361 RRM_1 RNA recogniti 99.3 6.8E-12 1.5E-16 80.8 6.8 49 2-50 15-69 (70)
58 KOG0110 RNA-binding protein (R 99.3 2E-11 4.2E-16 106.5 11.4 145 2-149 408-589 (725)
59 PLN03121 nucleic acid binding 99.3 2.5E-11 5.4E-16 94.2 10.4 74 81-159 4-78 (243)
60 KOG0126 Predicted RNA-binding 99.3 1.1E-12 2.3E-17 96.3 2.5 59 1-59 57-118 (219)
61 KOG0114 Predicted RNA-binding 99.3 2E-11 4.4E-16 81.3 8.3 74 80-157 16-90 (124)
62 KOG0122 Translation initiation 99.3 4.3E-11 9.3E-16 91.9 11.0 78 80-161 187-268 (270)
63 KOG0121 Nuclear cap-binding pr 99.3 1.4E-11 3.1E-16 85.3 7.2 77 80-160 34-114 (153)
64 KOG0120 Splicing factor U2AF, 99.3 2.5E-11 5.5E-16 103.9 9.6 147 3-149 313-483 (500)
65 PLN03213 repressor of silencin 99.3 3.6E-11 7.7E-16 100.9 9.7 77 80-160 8-86 (759)
66 KOG0113 U1 small nuclear ribon 99.2 4.3E-10 9.2E-15 88.9 14.2 60 2-61 124-186 (335)
67 KOG0111 Cyclophilin-type pepti 99.2 8.1E-12 1.8E-16 94.4 4.0 59 2-60 33-94 (298)
68 smart00362 RRM_2 RNA recogniti 99.2 1.4E-10 3.1E-15 74.3 8.9 64 84-147 1-66 (72)
69 KOG1548 Transcription elongati 99.2 1E-09 2.2E-14 88.4 14.9 142 14-159 179-349 (382)
70 KOG0125 Ataxin 2-binding prote 99.2 2.7E-11 5.8E-16 96.7 5.6 54 2-55 119-173 (376)
71 KOG0109 RNA-binding protein LA 99.2 3.9E-11 8.4E-16 94.4 6.0 72 83-162 3-74 (346)
72 KOG0117 Heterogeneous nuclear 99.2 8.5E-10 1.8E-14 91.6 13.5 116 23-156 39-158 (506)
73 KOG1456 Heterogeneous nuclear 99.2 2E-09 4.3E-14 87.6 15.2 153 2-156 311-483 (494)
74 KOG1190 Polypyrimidine tract-b 99.1 1.6E-09 3.4E-14 89.2 13.7 155 1-162 172-373 (492)
75 KOG0124 Polypyrimidine tract-b 99.1 7.5E-10 1.6E-14 89.8 11.6 52 3-54 234-288 (544)
76 KOG0131 Splicing factor 3b, su 99.1 1.4E-10 3E-15 85.4 6.6 78 79-160 6-87 (203)
77 KOG1456 Heterogeneous nuclear 99.1 8.3E-09 1.8E-13 84.1 17.4 150 3-159 146-360 (494)
78 KOG0148 Apoptosis-promoting RN 99.1 2.1E-10 4.6E-15 89.4 7.8 74 82-159 62-139 (321)
79 KOG0130 RNA-binding protein RB 99.1 5.3E-11 1.2E-15 83.2 3.8 54 2-55 95-151 (170)
80 KOG4212 RNA-binding protein hn 99.1 3.3E-10 7.1E-15 93.8 9.0 79 79-161 41-123 (608)
81 smart00360 RRM RNA recognition 99.1 7.8E-10 1.7E-14 70.5 8.4 62 87-148 1-66 (71)
82 KOG0415 Predicted peptidyl pro 99.1 2.4E-10 5.1E-15 92.3 6.6 76 78-157 235-314 (479)
83 cd00590 RRM RRM (RNA recogniti 99.1 2E-09 4.4E-14 69.2 9.9 69 84-156 1-72 (74)
84 PF00076 RRM_1: RNA recognitio 99.1 3.2E-10 6.9E-15 72.8 5.8 48 2-49 21-70 (70)
85 KOG0149 Predicted RNA-binding 99.1 5.8E-10 1.3E-14 85.4 7.4 74 81-155 11-88 (247)
86 COG0724 RNA-binding proteins ( 99.1 2.4E-09 5.1E-14 87.2 11.6 119 2-120 138-263 (306)
87 KOG0111 Cyclophilin-type pepti 99.0 2.8E-10 6E-15 86.2 5.2 81 79-163 7-91 (298)
88 PLN03120 nucleic acid binding 99.0 8.4E-10 1.8E-14 87.2 7.5 56 1-57 26-81 (260)
89 KOG1365 RNA-binding protein Fu 99.0 5.9E-10 1.3E-14 90.9 6.5 141 14-159 202-359 (508)
90 PF13893 RRM_5: RNA recognitio 99.0 2.9E-09 6.2E-14 65.3 8.1 54 99-157 1-54 (56)
91 KOG0120 Splicing factor U2AF, 99.0 2.2E-09 4.7E-14 92.3 9.0 145 5-157 213-364 (500)
92 KOG4208 Nucleolar RNA-binding 99.0 8.9E-10 1.9E-14 82.8 5.6 52 4-55 75-129 (214)
93 KOG0121 Nuclear cap-binding pr 99.0 7.3E-10 1.6E-14 76.9 4.7 56 1-56 58-116 (153)
94 KOG0114 Predicted RNA-binding 99.0 2.4E-09 5.3E-14 71.5 6.3 55 2-56 41-95 (124)
95 smart00360 RRM RNA recognition 98.9 3E-09 6.6E-14 67.8 6.2 50 2-51 19-71 (71)
96 COG0724 RNA-binding proteins ( 98.9 6.8E-09 1.5E-13 84.5 9.7 74 82-159 115-192 (306)
97 KOG0126 Predicted RNA-binding 98.9 1.9E-10 4E-15 84.6 0.3 73 82-158 35-111 (219)
98 PLN03121 nucleic acid binding 98.9 5.1E-09 1.1E-13 81.5 7.3 56 1-57 27-82 (243)
99 KOG0108 mRNA cleavage and poly 98.9 5.8E-09 1.3E-13 89.0 7.6 77 83-163 19-99 (435)
100 PF14259 RRM_6: RNA recognitio 98.9 6.3E-09 1.4E-13 66.8 5.9 49 1-49 20-70 (70)
101 smart00361 RRM_1 RNA recogniti 98.9 2.1E-08 4.6E-13 64.4 8.0 57 96-156 2-69 (70)
102 smart00362 RRM_2 RNA recogniti 98.8 1.3E-08 2.8E-13 65.0 6.6 50 2-51 22-72 (72)
103 KOG0415 Predicted peptidyl pro 98.8 3.2E-09 6.8E-14 85.9 4.0 58 1-58 261-321 (479)
104 PLN03213 repressor of silencin 98.8 9.5E-09 2.1E-13 86.6 6.1 52 2-55 33-87 (759)
105 KOG0149 Predicted RNA-binding 98.8 5.3E-09 1.2E-13 80.2 4.2 53 2-55 35-90 (247)
106 KOG0108 mRNA cleavage and poly 98.7 2E-08 4.4E-13 85.8 5.7 58 1-58 40-100 (435)
107 cd00590 RRM RRM (RNA recogniti 98.7 1.1E-07 2.5E-12 60.9 6.8 51 2-52 22-74 (74)
108 KOG0533 RRM motif-containing p 98.6 3.5E-07 7.6E-12 72.1 8.3 75 80-158 81-158 (243)
109 KOG4661 Hsp27-ERE-TATA-binding 98.6 2.3E-07 4.9E-12 79.8 7.5 75 82-160 405-483 (940)
110 KOG0132 RNA polymerase II C-te 98.5 3.1E-07 6.7E-12 81.5 7.8 72 82-159 421-492 (894)
111 KOG4454 RNA binding protein (R 98.5 5.5E-08 1.2E-12 73.9 2.1 114 2-145 32-150 (267)
112 KOG4454 RNA binding protein (R 98.5 6.7E-08 1.5E-12 73.4 2.4 74 80-153 7-82 (267)
113 KOG0112 Large RNA-binding prot 98.5 1E-07 2.2E-12 85.8 3.8 124 2-149 395-520 (975)
114 KOG0153 Predicted RNA-binding 98.4 1.1E-06 2.5E-11 71.2 8.4 77 79-161 225-302 (377)
115 KOG0146 RNA-binding protein ET 98.4 3.4E-07 7.3E-12 71.7 4.9 65 81-145 18-85 (371)
116 KOG4206 Spliceosomal protein s 98.4 1.4E-06 3E-11 66.9 8.0 72 82-157 9-85 (221)
117 KOG0106 Alternative splicing f 98.4 2.4E-07 5.2E-12 71.5 4.0 61 84-148 3-63 (216)
118 KOG1457 RNA binding protein (c 98.4 2.2E-06 4.8E-11 65.5 8.6 69 81-149 33-106 (284)
119 KOG4210 Nuclear localization s 98.4 7.5E-07 1.6E-11 72.7 6.2 145 3-162 112-264 (285)
120 KOG4208 Nucleolar RNA-binding 98.4 2.1E-06 4.6E-11 64.9 7.8 69 81-149 48-121 (214)
121 KOG0226 RNA-binding proteins [ 98.3 1.7E-06 3.8E-11 67.3 6.1 126 14-157 136-265 (290)
122 PF08777 RRM_3: RNA binding mo 98.3 2.2E-06 4.9E-11 59.3 6.0 59 83-143 2-60 (105)
123 KOG0116 RasGAP SH3 binding pro 98.3 3.6E-06 7.7E-11 71.8 8.0 77 82-163 288-368 (419)
124 KOG4676 Splicing factor, argin 98.3 2.1E-06 4.6E-11 70.7 6.1 63 84-147 9-78 (479)
125 KOG1365 RNA-binding protein Fu 98.2 1.8E-05 3.9E-10 65.2 10.9 121 14-139 98-225 (508)
126 KOG4211 Splicing factor hnRNP- 98.2 2E-05 4.4E-10 67.0 10.9 55 83-138 282-339 (510)
127 KOG0128 RNA-binding protein SA 98.2 5.8E-07 1.3E-11 80.6 1.2 109 2-147 690-804 (881)
128 KOG0129 Predicted RNA-binding 98.2 3.1E-05 6.7E-10 66.3 11.2 125 17-147 302-444 (520)
129 KOG0151 Predicted splicing reg 98.1 1.3E-05 2.8E-10 70.9 7.8 70 79-148 171-247 (877)
130 KOG1548 Transcription elongati 98.1 2E-05 4.4E-10 64.1 8.2 78 79-160 131-219 (382)
131 KOG2202 U2 snRNP splicing fact 98.1 1E-06 2.2E-11 68.8 0.5 52 2-53 92-145 (260)
132 KOG4660 Protein Mei2, essentia 98.1 4.6E-06 1E-10 71.7 4.3 67 81-148 74-140 (549)
133 PF11608 Limkain-b1: Limkain b 98.0 5.4E-05 1.2E-09 49.1 7.3 67 83-159 3-74 (90)
134 KOG0115 RNA-binding protein p5 97.9 3.4E-05 7.3E-10 60.4 7.0 92 30-148 6-100 (275)
135 PF04059 RRM_2: RNA recognitio 97.9 0.0002 4.4E-09 48.5 9.1 66 83-148 2-73 (97)
136 KOG4661 Hsp27-ERE-TATA-binding 97.9 2E-05 4.3E-10 68.1 5.2 57 1-57 427-486 (940)
137 KOG4209 Splicing factor RNPS1, 97.9 2.9E-05 6.3E-10 61.4 5.7 69 79-148 98-170 (231)
138 KOG4205 RNA-binding protein mu 97.9 1.9E-05 4E-10 65.0 4.6 66 81-147 5-74 (311)
139 KOG2193 IGF-II mRNA-binding pr 97.8 1.1E-06 2.4E-11 73.1 -2.8 109 18-148 37-147 (584)
140 KOG0132 RNA polymerase II C-te 97.8 3.3E-05 7.2E-10 69.0 6.1 53 2-57 444-496 (894)
141 KOG0153 Predicted RNA-binding 97.8 3E-05 6.5E-10 63.2 5.3 52 1-55 250-302 (377)
142 KOG2314 Translation initiation 97.8 2.1E-05 4.6E-10 67.9 4.6 54 1-54 86-142 (698)
143 KOG4307 RNA binding protein RB 97.8 7.8E-05 1.7E-09 66.0 7.9 139 14-157 348-509 (944)
144 PF11608 Limkain-b1: Limkain b 97.8 6E-05 1.3E-09 48.8 4.8 46 4-56 32-77 (90)
145 KOG4209 Splicing factor RNPS1, 97.7 4.6E-05 1E-09 60.3 4.7 53 3-56 125-180 (231)
146 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00019 4E-09 43.1 5.2 52 83-137 2-53 (53)
147 KOG0226 RNA-binding proteins [ 97.5 5.6E-05 1.2E-09 59.1 2.5 41 13-53 227-267 (290)
148 KOG2202 U2 snRNP splicing fact 97.4 0.00039 8.5E-09 54.6 6.0 52 97-148 83-138 (260)
149 KOG1996 mRNA splicing factor [ 97.3 0.00037 8.1E-09 55.7 5.1 53 2-54 309-365 (378)
150 COG5175 MOT2 Transcriptional r 97.2 0.00077 1.7E-08 54.9 5.5 53 2-54 143-201 (480)
151 KOG0151 Predicted splicing reg 97.2 0.0005 1.1E-08 61.2 4.5 56 2-57 197-258 (877)
152 KOG0533 RRM motif-containing p 97.1 0.0011 2.4E-08 52.6 5.8 55 2-56 106-162 (243)
153 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0041 8.9E-08 42.5 7.7 65 82-148 6-81 (100)
154 KOG1855 Predicted RNA-binding 97.1 0.00075 1.6E-08 56.7 4.4 64 80-143 229-309 (484)
155 KOG0116 RasGAP SH3 binding pro 97.1 0.00064 1.4E-08 58.3 4.1 54 1-55 310-366 (419)
156 KOG1995 Conserved Zn-finger pr 97.1 0.00062 1.4E-08 56.0 3.8 75 79-157 63-149 (351)
157 KOG4660 Protein Mei2, essentia 97.1 0.00019 4.2E-09 62.1 0.9 46 2-49 98-143 (549)
158 KOG4307 RNA binding protein RB 97.0 0.0034 7.4E-08 56.0 8.0 66 83-148 868-937 (944)
159 COG5175 MOT2 Transcriptional r 97.0 0.0032 6.9E-08 51.5 7.0 75 78-156 110-197 (480)
160 PF04059 RRM_2: RNA recognitio 96.9 0.0035 7.5E-08 42.5 5.8 51 4-54 28-85 (97)
161 PF08952 DUF1866: Domain of un 96.9 0.0037 7.9E-08 45.4 6.2 47 2-54 59-105 (146)
162 PF14605 Nup35_RRM_2: Nup53/35 96.8 0.0018 4E-08 38.7 3.5 31 2-35 23-53 (53)
163 KOG2314 Translation initiation 96.8 0.0041 8.9E-08 54.2 6.7 68 81-148 57-133 (698)
164 KOG3152 TBP-binding protein, a 96.7 0.001 2.2E-08 52.3 2.4 66 83-148 75-156 (278)
165 KOG1996 mRNA splicing factor [ 96.7 0.0075 1.6E-07 48.4 7.0 54 96-149 300-358 (378)
166 KOG0128 RNA-binding protein SA 96.6 0.0001 2.2E-09 66.7 -4.2 132 2-145 595-734 (881)
167 KOG2591 c-Mpl binding protein, 96.6 0.014 3E-07 51.0 8.1 59 80-141 173-233 (684)
168 PF05172 Nup35_RRM: Nup53/35/4 96.5 0.0098 2.1E-07 40.6 5.7 52 1-53 27-89 (100)
169 PF10309 DUF2414: Protein of u 96.4 0.03 6.4E-07 34.5 6.9 54 83-140 6-62 (62)
170 PF08777 RRM_3: RNA binding mo 96.1 0.011 2.4E-07 40.9 4.3 50 1-53 23-77 (105)
171 PF03880 DbpA: DbpA RNA bindin 96.0 0.023 5E-07 36.6 5.3 43 5-53 32-74 (74)
172 PF08952 DUF1866: Domain of un 96.0 0.041 8.8E-07 40.0 6.9 53 97-158 51-103 (146)
173 PF07292 NID: Nmi/IFP 35 domai 95.9 0.018 3.8E-07 38.3 4.3 73 21-104 1-74 (88)
174 PF07576 BRAP2: BRCA1-associat 95.8 0.15 3.2E-06 35.6 8.9 66 84-149 15-83 (110)
175 PF08675 RNA_bind: RNA binding 95.5 0.076 1.6E-06 34.6 6.0 54 84-142 11-64 (87)
176 PF03467 Smg4_UPF3: Smg-4/UPF3 95.2 0.09 1.9E-06 40.0 6.8 71 81-151 6-86 (176)
177 KOG1995 Conserved Zn-finger pr 95.2 0.011 2.4E-07 48.8 1.9 45 13-57 111-155 (351)
178 KOG4210 Nuclear localization s 94.6 0.016 3.4E-07 47.7 1.2 55 2-57 208-265 (285)
179 KOG2416 Acinus (induces apopto 94.5 0.026 5.7E-07 49.7 2.5 65 80-146 442-507 (718)
180 KOG0804 Cytoplasmic Zn-finger 94.4 0.2 4.4E-06 42.9 7.4 68 82-149 74-144 (493)
181 KOG4285 Mitotic phosphoprotein 94.2 0.34 7.3E-06 39.5 7.8 73 82-161 197-269 (350)
182 KOG0129 Predicted RNA-binding 93.8 0.15 3.2E-06 44.4 5.6 59 82-140 259-326 (520)
183 KOG2135 Proteins containing th 93.8 0.056 1.2E-06 46.4 2.9 74 81-161 371-445 (526)
184 KOG0835 Cyclin L [General func 93.6 0.14 3.1E-06 42.1 4.9 16 20-35 175-190 (367)
185 KOG2193 IGF-II mRNA-binding pr 93.4 0.094 2E-06 44.5 3.6 62 84-147 3-65 (584)
186 KOG2135 Proteins containing th 93.1 0.048 1E-06 46.9 1.5 51 2-56 396-446 (526)
187 KOG4285 Mitotic phosphoprotein 93.0 0.16 3.5E-06 41.2 4.3 51 1-55 218-269 (350)
188 KOG2068 MOT2 transcription fac 93.0 0.049 1.1E-06 44.8 1.3 53 2-54 103-161 (327)
189 KOG0835 Cyclin L [General func 92.9 0.16 3.6E-06 41.7 4.2 10 94-103 213-222 (367)
190 PF11767 SET_assoc: Histone ly 92.9 0.16 3.5E-06 31.7 3.3 30 21-50 36-65 (66)
191 KOG2416 Acinus (induces apopto 92.4 0.046 9.9E-07 48.3 0.5 49 3-54 469-520 (718)
192 KOG4849 mRNA cleavage factor I 92.4 0.15 3.2E-06 42.3 3.4 69 80-148 78-152 (498)
193 PF15023 DUF4523: Protein of u 92.2 0.72 1.6E-05 33.4 6.2 62 80-144 84-149 (166)
194 KOG0112 Large RNA-binding prot 92.0 0.033 7.1E-07 51.4 -0.8 65 82-146 372-439 (975)
195 PF04847 Calcipressin: Calcipr 91.3 0.64 1.4E-05 35.6 5.6 51 2-55 18-70 (184)
196 PF07576 BRAP2: BRCA1-associat 91.1 0.82 1.8E-05 31.8 5.5 41 5-45 40-81 (110)
197 KOG2253 U1 snRNP complex, subu 90.9 0.19 4.1E-06 45.1 2.7 67 77-148 35-101 (668)
198 PF03880 DbpA: DbpA RNA bindin 90.0 2.8 6E-05 26.8 7.0 59 90-157 9-72 (74)
199 PF04847 Calcipressin: Calcipr 89.5 1.5 3.2E-05 33.6 6.3 52 95-148 8-61 (184)
200 KOG2068 MOT2 transcription fac 89.1 0.25 5.3E-06 40.8 1.8 69 80-148 75-153 (327)
201 KOG4574 RNA-binding protein (c 87.6 0.26 5.7E-06 45.5 1.2 55 1-58 320-376 (1007)
202 PF14111 DUF4283: Domain of un 86.7 0.86 1.9E-05 33.5 3.4 85 18-117 55-140 (153)
203 KOG4574 RNA-binding protein (c 86.7 0.33 7.2E-06 44.9 1.4 60 85-146 301-360 (1007)
204 KOG1855 Predicted RNA-binding 85.8 0.29 6.3E-06 41.7 0.5 51 2-52 254-320 (484)
205 KOG4410 5-formyltetrahydrofola 85.0 9.2 0.0002 31.2 8.4 49 80-130 328-377 (396)
206 KOG4849 mRNA cleavage factor I 84.6 0.69 1.5E-05 38.5 2.1 48 6-53 109-159 (498)
207 KOG0804 Cytoplasmic Zn-finger 76.6 4.2 9.1E-05 35.2 4.2 41 5-45 101-142 (493)
208 PF08206 OB_RNB: Ribonuclease 75.3 1.6 3.5E-05 26.5 1.1 37 17-54 7-44 (58)
209 PF03439 Spt5-NGN: Early trans 75.2 8 0.00017 25.4 4.5 36 5-42 33-68 (84)
210 PRK14548 50S ribosomal protein 75.0 19 0.00041 23.7 6.1 52 89-140 27-81 (84)
211 KOG3263 Nucleic acid binding p 74.8 0.64 1.4E-05 34.5 -0.9 6 227-232 84-89 (196)
212 PF09902 DUF2129: Uncharacteri 73.8 8.1 0.00018 24.5 4.0 36 1-42 18-53 (71)
213 PF15023 DUF4523: Protein of u 72.5 8.6 0.00019 28.0 4.3 38 16-54 123-160 (166)
214 PF10309 DUF2414: Protein of u 72.5 4.9 0.00011 24.8 2.7 20 19-38 43-62 (62)
215 PF11767 SET_assoc: Histone ly 71.1 23 0.00049 22.2 6.7 50 93-147 11-60 (66)
216 KOG3152 TBP-binding protein, a 70.8 1.2 2.6E-05 35.6 -0.3 47 1-47 96-157 (278)
217 TIGR03636 L23_arch archaeal ri 70.4 26 0.00057 22.6 6.2 55 86-140 17-74 (77)
218 PF08675 RNA_bind: RNA binding 68.2 22 0.00047 23.4 5.1 35 1-40 30-64 (87)
219 KOG2591 c-Mpl binding protein, 66.9 2.3 5.1E-05 37.7 0.6 31 21-51 215-247 (684)
220 PRK02302 hypothetical protein; 65.3 14 0.00031 24.5 3.9 36 1-42 24-59 (89)
221 PF02714 DUF221: Domain of unk 64.8 14 0.0003 31.0 4.9 31 21-53 1-31 (325)
222 PF03468 XS: XS domain; Inter 64.3 21 0.00046 25.1 5.0 47 84-131 10-67 (116)
223 PRK02886 hypothetical protein; 63.8 17 0.00036 24.1 4.0 35 2-42 23-57 (87)
224 KOG1295 Nonsense-mediated deca 60.3 13 0.00027 31.7 3.7 64 83-146 8-78 (376)
225 KOG4483 Uncharacterized conser 59.0 57 0.0012 28.2 7.3 55 81-138 390-445 (528)
226 TIGR02381 cspD cold shock doma 56.6 12 0.00026 23.4 2.4 50 2-57 2-57 (68)
227 PF11823 DUF3343: Protein of u 56.3 19 0.00042 22.7 3.4 28 19-46 2-29 (73)
228 KOG2318 Uncharacterized conser 56.1 15 0.00033 33.0 3.7 35 19-53 269-305 (650)
229 PRK08559 nusG transcription an 55.9 25 0.00054 26.0 4.4 34 6-41 36-69 (153)
230 KOG0796 Spliceosome subunit [R 55.7 8.2 0.00018 32.0 1.9 10 23-32 26-35 (319)
231 PF15513 DUF4651: Domain of un 54.1 33 0.00072 21.1 3.9 20 96-115 8-27 (62)
232 KOG4019 Calcineurin-mediated s 52.5 25 0.00054 26.8 3.8 40 17-56 50-90 (193)
233 KOG2318 Uncharacterized conser 50.5 1.1E+02 0.0024 27.9 8.0 69 80-148 172-296 (650)
234 PF01782 RimM: RimM N-terminal 49.3 41 0.00089 21.7 4.2 24 18-42 54-77 (84)
235 PTZ00191 60S ribosomal protein 49.1 84 0.0018 23.1 6.0 55 85-139 84-141 (145)
236 PF00313 CSD: 'Cold-shock' DNA 47.5 21 0.00045 21.9 2.4 20 4-28 3-22 (66)
237 COG3254 Uncharacterized conser 47.3 84 0.0018 21.6 5.3 41 96-136 26-67 (105)
238 PRK11901 hypothetical protein; 47.1 1.6E+02 0.0034 24.9 7.9 63 79-144 242-308 (327)
239 PRK14998 cold shock-like prote 47.0 21 0.00045 22.8 2.4 11 17-27 12-22 (73)
240 PRK09937 stationary phase/star 46.2 22 0.00047 22.8 2.4 10 17-26 12-21 (74)
241 PRK11634 ATP-dependent RNA hel 46.0 63 0.0014 30.1 6.2 43 6-54 519-561 (629)
242 PRK14548 50S ribosomal protein 45.8 50 0.0011 21.8 4.0 32 5-36 48-79 (84)
243 PRK15464 cold shock-like prote 45.3 19 0.00041 22.8 2.0 39 17-56 15-59 (70)
244 COG5507 Uncharacterized conser 45.2 18 0.00038 24.4 1.8 37 3-39 48-87 (117)
245 PF00403 HMA: Heavy-metal-asso 45.1 66 0.0014 19.1 6.9 54 84-139 1-58 (62)
246 PRK10905 cell division protein 44.4 1.6E+02 0.0036 24.7 7.6 61 80-143 245-309 (328)
247 KOG2253 U1 snRNP complex, subu 43.0 8.4 0.00018 35.1 0.1 45 3-53 64-108 (668)
248 KOG2891 Surface glycoprotein [ 42.4 8.3 0.00018 31.3 0.0 63 84-146 151-248 (445)
249 KOG0115 RNA-binding protein p5 41.9 19 0.00041 29.0 1.9 54 1-54 53-112 (275)
250 PRK15463 cold shock-like prote 40.5 25 0.00055 22.2 2.0 40 17-56 15-59 (70)
251 PRK09507 cspE cold shock prote 40.1 25 0.00054 22.1 1.9 11 17-27 14-24 (69)
252 cd04489 ExoVII_LU_OBF ExoVII_L 40.1 16 0.00034 23.1 1.1 22 4-29 6-27 (78)
253 smart00738 NGN In Spt5p, this 39.6 69 0.0015 21.5 4.3 24 18-41 59-82 (106)
254 PRK10943 cold shock-like prote 39.2 26 0.00056 22.0 1.9 39 17-56 14-58 (69)
255 cd04458 CSP_CDS Cold-Shock Pro 38.9 33 0.00071 20.9 2.3 20 3-27 2-21 (65)
256 COG0090 RplB Ribosomal protein 38.7 97 0.0021 25.2 5.4 78 4-108 76-153 (275)
257 PRK09890 cold shock protein Cs 36.9 30 0.00065 21.8 1.9 11 17-27 15-25 (70)
258 cd07052 BMC_like_1_repeat2 Bac 36.8 1.1E+02 0.0024 19.9 4.5 27 6-37 46-73 (79)
259 KOG4246 Predicted DNA-binding 36.8 13 0.00029 34.9 0.4 16 17-32 58-73 (1194)
260 PF11910 NdhO: Cyanobacterial 36.2 43 0.00093 20.7 2.4 18 4-28 36-53 (67)
261 PF05573 NosL: NosL; InterPro 36.1 31 0.00068 25.3 2.2 26 16-41 112-137 (149)
262 KOG3580 Tight junction protein 35.9 1.3E+02 0.0028 27.8 6.2 38 80-117 59-97 (1027)
263 PF14893 PNMA: PNMA 35.2 28 0.0006 29.5 2.0 50 82-131 18-73 (331)
264 PF03467 Smg4_UPF3: Smg-4/UPF3 35.1 39 0.00084 25.7 2.7 40 18-57 55-99 (176)
265 PF08544 GHMP_kinases_C: GHMP 34.9 1.2E+02 0.0026 19.2 6.0 44 97-141 37-80 (85)
266 PRK10354 RNA chaperone/anti-te 34.4 34 0.00075 21.5 1.9 10 17-26 15-24 (70)
267 cd04485 DnaE_OBF DnaE_OBF: A s 34.3 59 0.0013 20.3 3.2 27 4-30 4-30 (84)
268 PRK13259 regulatory protein Sp 34.1 55 0.0012 22.1 2.9 23 5-27 2-27 (94)
269 COG0018 ArgS Arginyl-tRNA synt 33.4 3.1E+02 0.0068 25.3 8.4 84 6-117 73-165 (577)
270 TIGR00405 L26e_arch ribosomal 33.2 93 0.002 22.6 4.4 27 15-41 35-61 (145)
271 smart00596 PRE_C2HC PRE_C2HC d 32.1 1.1E+02 0.0024 19.3 3.8 56 97-159 2-62 (69)
272 KOG2295 C2H2 Zn-finger protein 31.9 8.8 0.00019 34.3 -1.4 67 81-147 230-300 (648)
273 COG5638 Uncharacterized conser 31.5 61 0.0013 28.1 3.4 35 19-53 259-295 (622)
274 KOG4008 rRNA processing protei 31.2 36 0.00077 27.1 1.9 34 81-114 39-72 (261)
275 PF05036 SPOR: Sporulation rel 29.9 52 0.0011 20.3 2.3 60 82-141 4-65 (76)
276 PF04026 SpoVG: SpoVG; InterP 29.9 64 0.0014 21.2 2.7 23 5-27 2-27 (84)
277 PLN02805 D-lactate dehydrogena 29.8 96 0.0021 28.4 4.7 38 2-39 293-332 (555)
278 KOG4213 RNA-binding protein La 29.4 84 0.0018 24.0 3.5 34 4-37 132-169 (205)
279 COG0858 RbfA Ribosome-binding 26.9 1.4E+02 0.0029 21.1 4.1 49 3-52 33-88 (118)
280 COG0445 GidA Flavin-dependent 26.7 3.1E+02 0.0068 25.3 7.0 97 18-117 236-336 (621)
281 PF11296 DUF3097: Protein of u 26.5 1.6E+02 0.0035 23.7 4.7 31 23-53 50-80 (275)
282 PF12829 Mhr1: Transcriptional 25.9 1.7E+02 0.0038 19.6 4.2 53 90-142 20-73 (91)
283 PRK11230 glycolate oxidase sub 25.7 1.3E+02 0.0027 27.2 4.6 38 2-39 216-255 (499)
284 TIGR00387 glcD glycolate oxida 25.6 1.4E+02 0.003 26.1 4.8 37 3-39 160-198 (413)
285 KOG3373 Glycine cleavage syste 25.6 2.9E+02 0.0064 20.7 6.5 40 2-41 78-119 (172)
286 KOG1999 RNA polymerase II tran 25.2 1.5E+02 0.0033 28.8 5.1 42 6-50 200-241 (1024)
287 PF13689 DUF4154: Domain of un 24.8 2.7E+02 0.0059 20.1 7.9 37 17-54 25-61 (145)
288 KOG4019 Calcineurin-mediated s 24.6 33 0.00072 26.1 0.7 63 84-148 12-79 (193)
289 KOG2187 tRNA uracil-5-methyltr 24.2 50 0.0011 29.6 1.8 39 17-55 62-100 (534)
290 PF02617 ClpS: ATP-dependent C 24.1 69 0.0015 20.7 2.1 34 18-51 47-81 (82)
291 KOG0156 Cytochrome P450 CYP2 s 24.0 1.2E+02 0.0027 27.2 4.3 40 2-48 58-97 (489)
292 cd04889 ACT_PDH-BS-like C-term 23.4 1.6E+02 0.0035 16.9 4.6 31 5-35 25-55 (56)
293 PRK13828 rimM 16S rRNA-process 23.2 1.5E+02 0.0032 22.1 3.9 30 18-53 41-70 (161)
294 COG4471 Uncharacterized protei 23.2 1.9E+02 0.0042 19.2 3.9 36 1-42 23-58 (90)
295 PRK14594 rimM 16S rRNA-process 23.1 1.4E+02 0.0031 22.3 3.9 30 18-53 58-87 (166)
296 PF06014 DUF910: Bacterial pro 22.2 55 0.0012 20.1 1.2 18 95-112 3-20 (62)
297 PF08156 NOP5NT: NOP5NT (NUC12 22.1 57 0.0012 20.4 1.3 21 18-38 44-64 (67)
298 PF09341 Pcc1: Transcription f 21.8 1.3E+02 0.0028 19.0 3.0 21 19-39 3-23 (76)
299 PRK12451 arginyl-tRNA syntheta 21.5 4.6E+02 0.0099 24.1 7.4 49 45-117 112-161 (562)
300 PRK14590 rimM 16S rRNA-process 21.4 1.6E+02 0.0036 22.2 3.9 30 18-53 57-86 (171)
301 PF02714 DUF221: Domain of unk 21.2 1.2E+02 0.0025 25.3 3.4 23 123-145 1-23 (325)
302 PRK10629 EnvZ/OmpR regulon mod 20.9 3.2E+02 0.007 19.5 7.2 47 94-144 50-97 (127)
303 PF09180 ProRS-C_1: Prolyl-tRN 20.6 79 0.0017 19.7 1.7 26 18-43 11-36 (68)
304 PF11181 YflT: Heat induced st 20.6 1.1E+02 0.0024 20.7 2.6 29 24-52 5-33 (103)
305 PF06919 Phage_T4_Gp30_7: Phag 20.6 1.7E+02 0.0037 20.1 3.3 40 3-53 29-68 (121)
306 KOG4246 Predicted DNA-binding 20.6 54 0.0012 31.2 1.3 8 83-90 146-153 (1194)
307 PF01071 GARS_A: Phosphoribosy 20.5 1.7E+02 0.0036 22.7 3.8 32 9-40 41-72 (194)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.94 E-value=4.6e-26 Score=189.77 Aligned_cols=137 Identities=23% Similarity=0.342 Sum_probs=117.5
Q ss_pred CcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 2 MYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVS 78 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
+||+|++|+|+. +++++|||||+|.++++|+.||++|||..|.+++|.|.++.....
T Consensus 130 ~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~-------------------- 189 (346)
T TIGR01659 130 TIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGE-------------------- 189 (346)
T ss_pred hcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccccccc--------------------
Confidence 699999999953 788999999999999999999999999999999999999764221
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 154 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 154 (250)
....++|||.|||..+++++|+++|.+||.|..+.|+.+... .||||+|.+.++|++||+.||+..+.+.. ..|
T Consensus 190 ~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~--~~l 267 (346)
T TIGR01659 190 SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGS--QPL 267 (346)
T ss_pred ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCc--eeE
Confidence 123458999999999999999999999999999999877532 29999999999999999999999998742 456
Q ss_pred EEEecc
Q 025583 155 RVREYD 160 (250)
Q Consensus 155 ~v~~~~ 160 (250)
.|....
T Consensus 268 ~V~~a~ 273 (346)
T TIGR01659 268 TVRLAE 273 (346)
T ss_pred EEEECC
Confidence 665443
No 2
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.6e-26 Score=177.92 Aligned_cols=141 Identities=19% Similarity=0.318 Sum_probs=121.0
Q ss_pred CcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 2 MYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVS 78 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
+||+|.+++|.. |+++||||||.|.+.++|++||..|||.+|+++.|...++.-++.... ...-.| ..-+...
T Consensus 85 pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n--~~~ltf--deV~NQs 160 (321)
T KOG0148|consen 85 PFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMN--GKPLTF--DEVYNQS 160 (321)
T ss_pred cccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccC--CCCccH--HHHhccC
Confidence 799999999954 899999999999999999999999999999999999999876551111 000000 0113345
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCc
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 148 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~ 148 (250)
.+.+++|||+|++..+++++|++.|..||.|..|.++++.. |+||.|++.|.|..||..||+.++.|+
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qG--YaFVrF~tkEaAahAIv~mNntei~G~ 228 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQG--YAFVRFETKEAAAHAIVQMNNTEIGGQ 228 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccc--eEEEEecchhhHHHHHHHhcCceeCce
Confidence 67889999999999999999999999999999999999877 999999999999999999999999995
No 3
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=6.9e-25 Score=160.04 Aligned_cols=160 Identities=56% Similarity=0.960 Sum_probs=132.9
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCC------CCCCCCCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRY------SSYSSGGS 74 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~------~~~~~~~~ 74 (250)
+|||.|.+|.|++...+.+||||+|+++.+|+.||..-||..++|..|.|+|+............. +.......
T Consensus 28 yKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~r 107 (241)
T KOG0105|consen 28 YKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRR 107 (241)
T ss_pred hhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCCcccccccccCCCCCCCCCCCccc
Confidence 589999999999877788999999999999999999999999999999999998776332221111 11111123
Q ss_pred CCCCCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEE
Q 025583 75 RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 154 (250)
Q Consensus 75 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 154 (250)
.++.....+.|.|.+||...+|+||++++.+.|.|++..+..+. .+.|+|...+++..|+.+|+...+...-.+..|
T Consensus 108 gppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg---~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yi 184 (241)
T KOG0105|consen 108 GPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG---VGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYI 184 (241)
T ss_pred CCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc---ceeeeeeehhhHHHHHHhhccccccCcCcEeeE
Confidence 35667788999999999999999999999999999999999886 689999999999999999999988775567888
Q ss_pred EEEecccCC
Q 025583 155 RVREYDSRR 163 (250)
Q Consensus 155 ~v~~~~~~r 163 (250)
.|..+...-
T Consensus 185 rv~~~~~~~ 193 (241)
T KOG0105|consen 185 RVRGDENRD 193 (241)
T ss_pred EecccCCCc
Confidence 888775553
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.93 E-value=1.1e-24 Score=190.85 Aligned_cols=147 Identities=20% Similarity=0.321 Sum_probs=120.4
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGV 77 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
.+||+|.+|.|+. +++++|||||+|.++++|+.||..|||..|+|+.|.|.+........... .....
T Consensus 129 ~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~---------~~~~~ 199 (612)
T TIGR01645 129 DPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPII---------DMVQE 199 (612)
T ss_pred HccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccccccccccc---------ccccc
Confidence 3799999999954 78899999999999999999999999999999999998654322111000 00011
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
......+|||+|||..+++++|+++|..||.|..+.+..+..+ +||||+|.+.++|..|++.||+..|+| ..
T Consensus 200 ~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgG----r~ 275 (612)
T TIGR01645 200 EAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGG----QY 275 (612)
T ss_pred cccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCC----eE
Confidence 1223468999999999999999999999999999999987543 299999999999999999999999999 68
Q ss_pred EEEEecc
Q 025583 154 VRVREYD 160 (250)
Q Consensus 154 i~v~~~~ 160 (250)
|.|...-
T Consensus 276 LrV~kAi 282 (612)
T TIGR01645 276 LRVGKCV 282 (612)
T ss_pred EEEEecC
Confidence 8887554
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.91 E-value=4e-23 Score=175.01 Aligned_cols=138 Identities=20% Similarity=0.327 Sum_probs=117.8
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGV 77 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
.+||+|.+|+|+. +++++|||||+|.++++|++||..|||..|.|+.|.|.++.+...
T Consensus 25 ~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~------------------- 85 (352)
T TIGR01661 25 TSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSD------------------- 85 (352)
T ss_pred HccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeeccccc-------------------
Confidence 3799999999964 788999999999999999999999999999999999999864321
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCC----CcEEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
......|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|..|++.|||..+.|.. ..
T Consensus 86 -~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~--~~ 162 (352)
T TIGR01661 86 -SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCT--EP 162 (352)
T ss_pred -ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCc--ee
Confidence 12345899999999999999999999999999998887642 239999999999999999999999998852 45
Q ss_pred EEEEecc
Q 025583 154 VRVREYD 160 (250)
Q Consensus 154 i~v~~~~ 160 (250)
|.|....
T Consensus 163 i~v~~a~ 169 (352)
T TIGR01661 163 ITVKFAN 169 (352)
T ss_pred EEEEECC
Confidence 6665543
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.91 E-value=2.4e-22 Score=170.26 Aligned_cols=156 Identities=22% Similarity=0.283 Sum_probs=117.6
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCC--eEEEEEEccCCCCCCCC-------------
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVELAHGGRRHSSS------------- 62 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~g--r~i~V~~~~~~~~~~~~------------- 62 (250)
.+||+|..+.|+. ++.++|||||+|.+.++|+.|+..|||..+.| .+|.|.++.........
T Consensus 111 ~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~ 190 (352)
T TIGR01661 111 SPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQ 190 (352)
T ss_pred hccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcc
Confidence 3699999999964 56789999999999999999999999999887 67888887543311000
Q ss_pred CCC-CCC-----------------CCCC-----------------------CCC------------------CCCCCCCc
Q 025583 63 MDR-YSS-----------------YSSG-----------------------GSR------------------GVSRRSDY 83 (250)
Q Consensus 63 ~~~-~~~-----------------~~~~-----------------------~~~------------------~~~~~~~~ 83 (250)
... ... +... ... ........
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (352)
T TIGR01661 191 TTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGY 270 (352)
T ss_pred cCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCc
Confidence 000 000 0000 000 00012234
Q ss_pred eEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEec
Q 025583 84 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 159 (250)
Q Consensus 84 ~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~ 159 (250)
.|||+|||..+++++|.++|.+||.|..+.|..+... +||||+|.+.++|..|+..|||..|+| +.|.|...
T Consensus 271 ~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~g----r~i~V~~~ 346 (352)
T TIGR01661 271 CIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGN----RVLQVSFK 346 (352)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEEc
Confidence 6999999999999999999999999999999987632 299999999999999999999999999 68887654
Q ss_pred c
Q 025583 160 D 160 (250)
Q Consensus 160 ~ 160 (250)
.
T Consensus 347 ~ 347 (352)
T TIGR01661 347 T 347 (352)
T ss_pred c
Confidence 3
No 7
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.90 E-value=1.2e-22 Score=177.74 Aligned_cols=147 Identities=18% Similarity=0.224 Sum_probs=119.5
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGV 77 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
.+||+|.+|.|+. ++.++|||||+|.+.++|++|| .|+|..|.|++|.|.++............. ...
T Consensus 111 ~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~--------~~~ 181 (457)
T TIGR01622 111 SKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQSSQAEKNRAAKAATH--------QPG 181 (457)
T ss_pred HhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEeecchhhhhhhhcccc--------cCC
Confidence 3699999999964 6789999999999999999999 599999999999999875433221100000 001
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
..+...+|||+|||..+++++|+++|..||.|..+.+..+..+ +||||+|.+.++|..|++.|||..|.| ..
T Consensus 182 ~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g----~~ 257 (457)
T TIGR01622 182 DIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAG----RP 257 (457)
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECC----EE
Confidence 1123579999999999999999999999999999999877654 399999999999999999999999999 67
Q ss_pred EEEEecc
Q 025583 154 VRVREYD 160 (250)
Q Consensus 154 i~v~~~~ 160 (250)
|.|....
T Consensus 258 i~v~~a~ 264 (457)
T TIGR01622 258 IKVGYAQ 264 (457)
T ss_pred EEEEEcc
Confidence 7776643
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.88 E-value=6.3e-22 Score=177.25 Aligned_cols=136 Identities=22% Similarity=0.362 Sum_probs=116.9
Q ss_pred CcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 2 MYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVS 78 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
+||+|++|+|.. +++++|||||+|.+.++|++|+..||+..|.|+.|.|.++...... .
T Consensus 23 ~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~------------------~ 84 (562)
T TIGR01628 23 PFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPSL------------------R 84 (562)
T ss_pred hcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccccc------------------c
Confidence 799999999954 6889999999999999999999999999999999999987532211 0
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC---cEEEEEecCHHHHHHHHHHccCCcccCcceeeEEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 155 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 155 (250)
......|||+|||.++++++|.++|..||.|..+.+..+..+ +||||+|.+.++|..|++.|||..+.+ ..|.
T Consensus 85 ~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~----~~i~ 160 (562)
T TIGR01628 85 RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLND----KEVY 160 (562)
T ss_pred ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecC----ceEE
Confidence 122347999999999999999999999999999999877554 399999999999999999999999999 5666
Q ss_pred EEec
Q 025583 156 VREY 159 (250)
Q Consensus 156 v~~~ 159 (250)
|...
T Consensus 161 v~~~ 164 (562)
T TIGR01628 161 VGRF 164 (562)
T ss_pred Eecc
Confidence 6543
No 9
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.88 E-value=2.7e-22 Score=156.20 Aligned_cols=122 Identities=28% Similarity=0.509 Sum_probs=112.6
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRS 81 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (250)
+||+|++|+|. |.||||..++...|+.||.+|+|..|.|..|.|+-++++.+.
T Consensus 25 ~ygkVlECDIv-----KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~---------------------- 77 (346)
T KOG0109|consen 25 QYGKVLECDIV-----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKA---------------------- 77 (346)
T ss_pred hhCceEeeeee-----cccceEEeecccccHHHHhhcccceecceEEEEEeccccCCC----------------------
Confidence 79999999998 889999999999999999999999999999999999876432
Q ss_pred CceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEe
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 158 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 158 (250)
.++|+|+||.+.++.++|+..|.+||+|+.+.|+.+ |+||.|+-.++|..|+..|++.+|.|. .+.|..
T Consensus 78 stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd----y~fvh~d~~eda~~air~l~~~~~~gk----~m~vq~ 146 (346)
T KOG0109|consen 78 STKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD----YAFVHFDRAEDAVEAIRGLDNTEFQGK----RMHVQL 146 (346)
T ss_pred ccccccCCCCccccCHHHhhhhcccCCceeeeeecc----eeEEEEeeccchHHHHhcccccccccc----eeeeee
Confidence 348999999999999999999999999999999998 999999999999999999999999994 555543
No 10
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=1.9e-21 Score=159.43 Aligned_cols=151 Identities=19% Similarity=0.245 Sum_probs=115.6
Q ss_pred CcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccC-CeEEEEEEccCC----------CCCCCC-----
Q 025583 2 MYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRLRVELAHGG----------RRHSSS----- 62 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~-gr~i~V~~~~~~----------~~~~~~----- 62 (250)
+.|+|.++.|+. +|.++|||||.|.+.++|++||+.||+.+|. |+.|.|+.+... ......
T Consensus 106 kiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~ 185 (506)
T KOG0117|consen 106 KIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEM 185 (506)
T ss_pred hccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCccccHHHHHHHH
Confidence 569999999965 7999999999999999999999999999885 999999876421 000000
Q ss_pred -------------CCCCCCCCCC-----------------------------------------CCCCCCCCCCceEEEe
Q 025583 63 -------------MDRYSSYSSG-----------------------------------------GSRGVSRRSDYRVLVT 88 (250)
Q Consensus 63 -------------~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~l~v~ 88 (250)
........++ ......+.....|||.
T Consensus 186 ~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVR 265 (506)
T KOG0117|consen 186 KKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVR 265 (506)
T ss_pred HhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeee
Confidence 0000000000 0001123445689999
Q ss_pred CCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEecc
Q 025583 89 GLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 160 (250)
Q Consensus 89 ~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~ 160 (250)
||+..+|++.|+.+|.+||.|..|....| ||||+|.+.++|.+|++.|||.+|+|+ .|.|-..+
T Consensus 266 NL~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkeldG~----~iEvtLAK 329 (506)
T KOG0117|consen 266 NLMESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKELDGS----PIEVTLAK 329 (506)
T ss_pred ccchhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCceecCc----eEEEEecC
Confidence 99999999999999999999999998877 999999999999999999999999995 55554433
No 11
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.87 E-value=7.6e-21 Score=166.70 Aligned_cols=146 Identities=21% Similarity=0.274 Sum_probs=112.2
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCC-------CCCCCCCCC-
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSM-------DRYSSYSSG- 72 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~-------~~~~~~~~~- 72 (250)
.+||+|..|+|+.+ .+|||||+|.++++|+.||..|||..|.|++|.|.+++......... .....+...
T Consensus 298 ~~yG~V~~vki~~~--~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~ 375 (481)
T TIGR01649 298 CVYGNVERVKFMKN--KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSR 375 (481)
T ss_pred HhcCCeEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCc
Confidence 37999999999754 37999999999999999999999999999999999986543221110 000111110
Q ss_pred -CCC--------CCCCCCCceEEEeCCCCccCHHHHHHHhhccCC--eeEEEEEecCCC--cEEEEEecCHHHHHHHHHH
Q 025583 73 -GSR--------GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRK 139 (250)
Q Consensus 73 -~~~--------~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~--v~~~~~~~~~~~--~~a~v~f~~~~~a~~a~~~ 139 (250)
.+. .....+..+|||.|||..+++++|+++|..||. +..+.+.....+ ++|||+|.+.++|..|+..
T Consensus 376 ~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ 455 (481)
T TIGR01649 376 NHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIA 455 (481)
T ss_pred cccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHH
Confidence 011 111245568999999999999999999999998 777777644322 3999999999999999999
Q ss_pred ccCCcccCc
Q 025583 140 LDRSEFRNA 148 (250)
Q Consensus 140 l~g~~~~g~ 148 (250)
||+..|.++
T Consensus 456 ln~~~l~~~ 464 (481)
T TIGR01649 456 LNHHQLNEP 464 (481)
T ss_pred hcCCccCCC
Confidence 999999985
No 12
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.87 E-value=7.6e-21 Score=166.68 Aligned_cols=147 Identities=14% Similarity=0.171 Sum_probs=115.5
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHh--hCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRG--RDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVS 78 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~--l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
++||+|.+|.|+. .++||||+|+++++|++|+.. +++..|.|++|.|.++............ . ....
T Consensus 24 ~~fG~V~~v~i~~---~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~~~~~~---~-----~~~~ 92 (481)
T TIGR01649 24 IPFGPVSYVMMLP---GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKRDGNSD---F-----DSAG 92 (481)
T ss_pred HhcCCeeEEEEEC---CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccccCCCCc---c-----cCCC
Confidence 3799999999974 479999999999999999986 4789999999999998754322111000 0 0011
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEe
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 158 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 158 (250)
......|+|.||+..+++++|.++|..||.|..+.+..+....+|||+|.+.++|.+|++.|||..|.+. ...|.|..
T Consensus 93 ~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~--~~~l~v~~ 170 (481)
T TIGR01649 93 PNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNG--CCTLKIEY 170 (481)
T ss_pred CCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCC--ceEEEEEE
Confidence 2234578999999999999999999999999999988776545899999999999999999999999763 14566654
Q ss_pred cc
Q 025583 159 YD 160 (250)
Q Consensus 159 ~~ 160 (250)
.+
T Consensus 171 sk 172 (481)
T TIGR01649 171 AK 172 (481)
T ss_pred ec
Confidence 43
No 13
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=1.7e-20 Score=135.99 Aligned_cols=79 Identities=25% Similarity=0.318 Sum_probs=71.5
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEec
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 159 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~ 159 (250)
...++|||+||+..++..+|+.+|..||.|..|+|..++.+ ||||+|+++.+|+.|+..|+|..|+| ..|.|+..
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPG-fAFVEFed~RDA~DAvr~LDG~~~cG----~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPG-FAFVEFEDPRDAEDAVRYLDGKDICG----SRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCC-ceEEeccCcccHHHHHhhcCCccccC----ceEEEEee
Confidence 34679999999999999999999999999999999987766 99999999999999999999999999 78888876
Q ss_pred ccCC
Q 025583 160 DSRR 163 (250)
Q Consensus 160 ~~~r 163 (250)
....
T Consensus 83 ~G~~ 86 (195)
T KOG0107|consen 83 TGRP 86 (195)
T ss_pred cCCc
Confidence 5443
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.86 E-value=6.5e-21 Score=170.71 Aligned_cols=144 Identities=17% Similarity=0.276 Sum_probs=117.7
Q ss_pred CCcccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 1 MMYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVS 78 (250)
Q Consensus 1 ~kfG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
++||+|++|+|.. +++++|||||+|+++++|+.|+++|||..+.|+.|.|.......... ...
T Consensus 110 ~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~---------------~~~ 174 (562)
T TIGR01628 110 SKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHERE---------------AAP 174 (562)
T ss_pred HhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccc---------------ccc
Confidence 3799999999965 67789999999999999999999999999999999997764332211 012
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCcceeeEEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 155 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 155 (250)
....+.|||.|||..+++++|+++|..||.|..+.+..+..+. ||||+|.+.++|..|++.|+|..+.+......+.
T Consensus 175 ~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~ 254 (562)
T TIGR01628 175 LKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLY 254 (562)
T ss_pred ccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeE
Confidence 2344689999999999999999999999999999998775543 9999999999999999999999998111115666
Q ss_pred EEec
Q 025583 156 VREY 159 (250)
Q Consensus 156 v~~~ 159 (250)
|...
T Consensus 255 v~~a 258 (562)
T TIGR01628 255 VGRA 258 (562)
T ss_pred eecc
Confidence 6543
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.86 E-value=2.9e-20 Score=164.90 Aligned_cols=149 Identities=15% Similarity=0.195 Sum_probs=110.1
Q ss_pred ccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCC-----CCCCCCCC----CCC
Q 025583 4 GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSM-----DRYSSYSS----GGS 74 (250)
Q Consensus 4 G~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~-----~~~~~~~~----~~~ 74 (250)
+.|..|.+. ..+|||||+|.+.++|..|| +|||+.|.|.+|.|.........+... ........ ...
T Consensus 212 ~~v~~~~~~---~~kg~afVeF~~~e~A~~Al-~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (509)
T TIGR01642 212 KHVSSVNIN---KEKNFAFLEFRTVEEATFAM-ALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVN 287 (509)
T ss_pred CceEEEEEC---CCCCEEEEEeCCHHHHhhhh-cCCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccc
Confidence 456666654 45899999999999999999 699999999999997654332111000 00000000 001
Q ss_pred CCCCCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcce
Q 025583 75 RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 150 (250)
Q Consensus 75 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~ 150 (250)
.........+|||+|||..+++++|+++|..||.|..+.++.+... +||||+|.+.++|..|++.|+|..|.|
T Consensus 288 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~--- 364 (509)
T TIGR01642 288 STTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGD--- 364 (509)
T ss_pred cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC---
Confidence 1112344579999999999999999999999999999998876432 399999999999999999999999999
Q ss_pred eeEEEEEecc
Q 025583 151 RSYVRVREYD 160 (250)
Q Consensus 151 ~~~i~v~~~~ 160 (250)
..|.|....
T Consensus 365 -~~l~v~~a~ 373 (509)
T TIGR01642 365 -NKLHVQRAC 373 (509)
T ss_pred -eEEEEEECc
Confidence 567776543
No 16
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=4.2e-21 Score=147.46 Aligned_cols=138 Identities=21% Similarity=0.341 Sum_probs=119.7
Q ss_pred cccEEEEEEe---cCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 3 YGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSR 79 (250)
Q Consensus 3 fG~I~~v~i~---~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
.|+|++|+|. .+|++.||+||-|-+++||++|+..|||..|..+.|+|.++.+... .
T Consensus 65 iGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~--------------------~ 124 (360)
T KOG0145|consen 65 IGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSD--------------------S 124 (360)
T ss_pred ccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChh--------------------h
Confidence 5899999994 4899999999999999999999999999999999999999975432 3
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEEE
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 155 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 155 (250)
..+..|||.+||..++..+|+++|.+||.|+...|..+...+ .|||.|+...+|+.||+.|||..-.|- ...|.
T Consensus 125 Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~--tepIt 202 (360)
T KOG0145|consen 125 IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGC--TEPIT 202 (360)
T ss_pred hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCC--CCCeE
Confidence 455689999999999999999999999999888877665433 899999999999999999999998886 35677
Q ss_pred EEecccC
Q 025583 156 VREYDSR 162 (250)
Q Consensus 156 v~~~~~~ 162 (250)
|+.....
T Consensus 203 VKFannP 209 (360)
T KOG0145|consen 203 VKFANNP 209 (360)
T ss_pred EEecCCc
Confidence 7655433
No 17
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.85 E-value=2.8e-20 Score=163.04 Aligned_cols=125 Identities=20% Similarity=0.214 Sum_probs=105.3
Q ss_pred CCCCCcEEEEEECChHHHHHHHHhhCC--CccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCC
Q 025583 14 PPRPPGYAFLEFEDYRDAEDAIRGRDG--YNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLP 91 (250)
Q Consensus 14 ~~~~~g~aFV~f~~~e~A~~A~~~l~g--~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp 91 (250)
.++++|||||+|.++++|..|+.+|+. ..|.|+.|.|+++........ .......+|||+||+
T Consensus 178 kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~---------------~~~~~~k~LfVgNL~ 242 (578)
T TIGR01648 178 KKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDE---------------DVMAKVKILYVRNLM 242 (578)
T ss_pred cCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccc---------------cccccccEEEEeCCC
Confidence 456899999999999999999988864 467899999999875432211 112334689999999
Q ss_pred CccCHHHHHHHhhcc--CCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEeccc
Q 025583 92 SSASWQDLKDHMRRA--GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 161 (250)
Q Consensus 92 ~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~ 161 (250)
..+++++|+++|.+| |.|..+.+..+ ||||+|.+.++|.+|++.||+.+|+| +.|.|.....
T Consensus 243 ~~~tee~L~~~F~~f~~G~I~rV~~~rg----fAFVeF~s~e~A~kAi~~lnG~~i~G----r~I~V~~Akp 306 (578)
T TIGR01648 243 TTTTEEIIEKSFSEFKPGKVERVKKIRD----YAFVHFEDREDAVKAMDELNGKELEG----SEIEVTLAKP 306 (578)
T ss_pred CCCCHHHHHHHHHhcCCCceEEEEeecC----eEEEEeCCHHHHHHHHHHhCCCEECC----EEEEEEEccC
Confidence 999999999999999 99999988765 99999999999999999999999999 6788776644
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.85 E-value=8.9e-20 Score=161.79 Aligned_cols=153 Identities=18% Similarity=0.241 Sum_probs=112.8
Q ss_pred CcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCC--CCC-CCC--
Q 025583 2 MYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYS--SYS-SGG-- 73 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~--~~~-~~~-- 73 (250)
+||.|..|.|+. ++.++|||||+|.+.++|+.||..|||+.|+|+.|.|.++.............+ ... ...
T Consensus 318 ~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (509)
T TIGR01642 318 SFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKAL 397 (509)
T ss_pred hcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccc
Confidence 699999999854 788999999999999999999999999999999999999865433221110000 000 000
Q ss_pred ---CCCCCCCCCceEEEeCCCCcc----------CHHHHHHHhhccCCeeEEEEEecCC-------CcEEEEEecCHHHH
Q 025583 74 ---SRGVSRRSDYRVLVTGLPSSA----------SWQDLKDHMRRAGDVCFSQVFRDRG-------GMTGIVDYTSYDDM 133 (250)
Q Consensus 74 ---~~~~~~~~~~~l~v~~lp~~~----------~~~~l~~~f~~~g~v~~~~~~~~~~-------~~~a~v~f~~~~~a 133 (250)
.......+..+|+|.||.... ..++|+++|.+||.|..|.|..+.. .++|||+|.++++|
T Consensus 398 ~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A 477 (509)
T TIGR01642 398 SQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSA 477 (509)
T ss_pred hhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHH
Confidence 001112345678899986421 2367999999999999999876421 13899999999999
Q ss_pred HHHHHHccCCcccCcceeeEEEEEe
Q 025583 134 KYAIRKLDRSEFRNAFSRSYVRVRE 158 (250)
Q Consensus 134 ~~a~~~l~g~~~~g~~~~~~i~v~~ 158 (250)
..|+..|||..|.| +.|.+..
T Consensus 478 ~~A~~~lnGr~~~g----r~v~~~~ 498 (509)
T TIGR01642 478 EKAMEGMNGRKFND----RVVVAAF 498 (509)
T ss_pred HHHHHHcCCCEECC----eEEEEEE
Confidence 99999999999999 5665543
No 19
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=6.6e-21 Score=145.62 Aligned_cols=143 Identities=38% Similarity=0.595 Sum_probs=116.0
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRR 80 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (250)
.+||.|.+|.|+ .||+||+|+++.+|+.|+..||+..|+|..+.|+++............+...+....+.++..
T Consensus 23 ~~yg~~~d~~mk-----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~ 97 (216)
T KOG0106|consen 23 KGYGKIPDADMK-----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGRPRGGDRRSDSRRYRPPSR 97 (216)
T ss_pred hhccccccceee-----cccceeccCchhhhhcccchhcCceecceeeeeecccccccccCCCCCCCccchhhccCCccc
Confidence 369999999998 789999999999999999999999999999999998865433310000000001234456677
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEE
Q 025583 81 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 156 (250)
Q Consensus 81 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 156 (250)
+.+.+.|.+++..+.+++|.++|..+|.+.+..+..+ ++||+|.+.++|..|++.|++.++.+ +.|.+
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~~~----~~~v~Fs~~~da~ra~~~l~~~~~~~----~~l~~ 165 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDARRN----FAFVEFSEQEDAKRALEKLDGKKLNG----RRISV 165 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhhhcc----ccceeehhhhhhhhcchhccchhhcC----ceeee
Confidence 8889999999999999999999999999966655333 89999999999999999999999999 67776
No 20
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=7.1e-21 Score=152.64 Aligned_cols=142 Identities=22% Similarity=0.361 Sum_probs=115.9
Q ss_pred CcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 2 MYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVS 78 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
.||+|++|.|-+ |++.+|||||+|+-+|.|+.|++.|||..++|+.|+|....+-+....-.+ .....
T Consensus 136 PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID---------~vqee 206 (544)
T KOG0124|consen 136 PFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIID---------MVQEE 206 (544)
T ss_pred CCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccchHHH---------HHHHH
Confidence 499999999944 899999999999999999999999999999999999985432211100000 00001
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 154 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 154 (250)
....++|||..+..+.+++||+..|+.||+|.+|.+...+.+. ||||+|.+......|+..||-..+.|+ .+
T Consensus 207 Ak~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQ----yL 282 (544)
T KOG0124|consen 207 AKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQ----YL 282 (544)
T ss_pred HHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccc----eE
Confidence 2334689999999999999999999999999999998876654 999999999999999999999999994 55
Q ss_pred EE
Q 025583 155 RV 156 (250)
Q Consensus 155 ~v 156 (250)
+|
T Consensus 283 RV 284 (544)
T KOG0124|consen 283 RV 284 (544)
T ss_pred ec
Confidence 55
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=2.3e-19 Score=150.59 Aligned_cols=148 Identities=22% Similarity=0.359 Sum_probs=112.2
Q ss_pred CCcccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCC---------------
Q 025583 1 MMYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSM--------------- 63 (250)
Q Consensus 1 ~kfG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~--------------- 63 (250)
++||.|.+|.|+. .++.+|||||+|.+..+|.+||+.|||..|+|++|.|+|+-.+..-....
T Consensus 139 s~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEe 218 (678)
T KOG0127|consen 139 SNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEE 218 (678)
T ss_pred hhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhh
Confidence 5799999999975 56667999999999999999999999999999999999986432211100
Q ss_pred ----CCCCCC-----------------CC-----------------------CCC-----C------CCCCCCCceEEEe
Q 025583 64 ----DRYSSY-----------------SS-----------------------GGS-----R------GVSRRSDYRVLVT 88 (250)
Q Consensus 64 ----~~~~~~-----------------~~-----------------------~~~-----~------~~~~~~~~~l~v~ 88 (250)
+...+. .+ .+. . ........+|||.
T Consensus 219 d~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvR 298 (678)
T KOG0127|consen 219 DKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVR 298 (678)
T ss_pred hcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEe
Confidence 000000 00 000 0 0011223689999
Q ss_pred CCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHc-----cC-CcccCc
Q 025583 89 GLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKL-----DR-SEFRNA 148 (250)
Q Consensus 89 ~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l-----~g-~~~~g~ 148 (250)
|||+++++++|.++|.+||+|.++.++.++.++ .|||.|.++.+|..||+.. .| ..|.|+
T Consensus 299 NL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR 368 (678)
T KOG0127|consen 299 NLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGR 368 (678)
T ss_pred cCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEecc
Confidence 999999999999999999999999999887654 9999999999999999875 22 556673
No 22
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.83 E-value=6.6e-20 Score=133.81 Aligned_cols=133 Identities=23% Similarity=0.329 Sum_probs=111.4
Q ss_pred CcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 2 MYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVS 78 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
|.|+|++|+|+. +...+|||||+|.++|+|+-|++.||...|.|++|+|..+.... ..
T Consensus 32 qagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~~-------------------~n 92 (203)
T KOG0131|consen 32 QAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAHQ-------------------KN 92 (203)
T ss_pred hcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEeccccc-------------------cc
Confidence 579999999975 77889999999999999999999999999999999998875211 11
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeE-EEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
..-...|||+||.+.+.+..|.+.|..||.+.. -.++.+++++ ||||.|++.+.+.+|+..|||..++.+ .
T Consensus 93 l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr----~ 168 (203)
T KOG0131|consen 93 LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNR----P 168 (203)
T ss_pred ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCC----c
Confidence 223358999999999999999999999998754 3555555422 999999999999999999999999994 5
Q ss_pred EEEE
Q 025583 154 VRVR 157 (250)
Q Consensus 154 i~v~ 157 (250)
|.|.
T Consensus 169 itv~ 172 (203)
T KOG0131|consen 169 ITVS 172 (203)
T ss_pred eEEE
Confidence 5554
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.83 E-value=4.4e-19 Score=155.34 Aligned_cols=154 Identities=19% Similarity=0.304 Sum_probs=112.1
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCC------------CCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSS------------MDR 65 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~------------~~~ 65 (250)
.+||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|++|.|.++......... ...
T Consensus 208 ~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~ 287 (457)
T TIGR01622 208 EPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGK 287 (457)
T ss_pred HhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCc
Confidence 3799999999964 6688999999999999999999999999999999999996522110000 000
Q ss_pred ----------------CC--------CCCC----------CC---------------------CCCC---CCCCCceEEE
Q 025583 66 ----------------YS--------SYSS----------GG---------------------SRGV---SRRSDYRVLV 87 (250)
Q Consensus 66 ----------------~~--------~~~~----------~~---------------------~~~~---~~~~~~~l~v 87 (250)
.. .... .+ ...+ ......+|+|
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 367 (457)
T TIGR01622 288 NLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVL 367 (457)
T ss_pred CCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEE
Confidence 00 0000 00 0000 1134457888
Q ss_pred eCCCCccC----------HHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEE
Q 025583 88 TGLPSSAS----------WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 157 (250)
Q Consensus 88 ~~lp~~~~----------~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 157 (250)
.||..... .++|+++|.+||.|+.+.+......+++||+|.+.++|..|++.|||..|+| +.|.+.
T Consensus 368 ~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~g----r~i~~~ 443 (457)
T TIGR01622 368 SNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGG----KMITAA 443 (457)
T ss_pred ecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCC----eEEEEE
Confidence 88854433 3689999999999999988755444589999999999999999999999999 566665
Q ss_pred e
Q 025583 158 E 158 (250)
Q Consensus 158 ~ 158 (250)
.
T Consensus 444 ~ 444 (457)
T TIGR01622 444 F 444 (457)
T ss_pred E
Confidence 4
No 24
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=1.3e-19 Score=152.18 Aligned_cols=156 Identities=18% Similarity=0.236 Sum_probs=122.1
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCC--CCCCCCCCCC-
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMD--RYSSYSSGGS- 74 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~--~~~~~~~~~~- 74 (250)
+.+|+|..|.+.. ++.++|||||.|+-+||++.|+..+++..|.|+.|.|.+++.......... +......-..
T Consensus 27 S~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~ 106 (678)
T KOG0127|consen 27 SYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQK 106 (678)
T ss_pred hcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccccccchhcccccchhhhcccccC
Confidence 4689999999964 557899999999999999999999999999999999999976544331100 0000000000
Q ss_pred -CC--CCCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCc
Q 025583 75 -RG--VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNA 148 (250)
Q Consensus 75 -~~--~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~ 148 (250)
.. ....+.+.|.|.|||..+...+|+.+|..||.|..+.|+...++. ||||.|.+..+|..|++.+|+.+|.|+
T Consensus 107 ~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR 186 (678)
T KOG0127|consen 107 RPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGR 186 (678)
T ss_pred CcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCc
Confidence 00 012337899999999999999999999999999999999887776 999999999999999999999999995
Q ss_pred ceeeEEEE
Q 025583 149 FSRSYVRV 156 (250)
Q Consensus 149 ~~~~~i~v 156 (250)
.+..-+.|
T Consensus 187 ~VAVDWAV 194 (678)
T KOG0127|consen 187 PVAVDWAV 194 (678)
T ss_pred eeEEeeec
Confidence 43333333
No 25
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=1.3e-19 Score=148.12 Aligned_cols=141 Identities=19% Similarity=0.376 Sum_probs=116.8
Q ss_pred CcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCC-ccCC--eEEEEEEccCCCCCCCCCCCCCCCCCCCCC
Q 025583 2 MYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGY-NFDG--YRLRVELAHGGRRHSSSMDRYSSYSSGGSR 75 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~-~~~g--r~i~V~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (250)
|||.|.+|.|.. ++.++|||||.|.+.++|.+|+.+|+++ .|.| .+|.|.++...+..
T Consensus 57 ~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er---------------- 120 (510)
T KOG0144|consen 57 KYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERER---------------- 120 (510)
T ss_pred HhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhc----------------
Confidence 799999999954 8899999999999999999999999985 4444 57888888655432
Q ss_pred CCCCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCc-ccCccee
Q 025583 76 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSE-FRNAFSR 151 (250)
Q Consensus 76 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~-~~g~~~~ 151 (250)
.....+|||+-|+..+++.+|+++|.+||.|..+.|.++..+. +|||.|.+.+.|..||+.|||.. +.|- .
T Consensus 121 ---~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGc--s 195 (510)
T KOG0144|consen 121 ---IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGC--S 195 (510)
T ss_pred ---cccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccC--C
Confidence 1335689999999999999999999999999999999987765 99999999999999999999964 3443 3
Q ss_pred eEEEEEecccCC
Q 025583 152 SYVRVREYDSRR 163 (250)
Q Consensus 152 ~~i~v~~~~~~r 163 (250)
..|-|+..+..+
T Consensus 196 ~PLVVkFADtqk 207 (510)
T KOG0144|consen 196 QPLVVKFADTQK 207 (510)
T ss_pred CceEEEecccCC
Confidence 566666555443
No 26
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.80 E-value=1.6e-18 Score=129.07 Aligned_cols=77 Identities=21% Similarity=0.191 Sum_probs=68.8
Q ss_pred CCCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceee
Q 025583 77 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 152 (250)
Q Consensus 77 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~ 152 (250)
+.....+.|.|-||.+.++.++|..+|++||.|..|.|..+..+. ||||.|....+|+.|++.|+|.+|+| +
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldg----R 83 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDG----R 83 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecc----c
Confidence 445566789999999999999999999999999999999887654 99999999999999999999999999 5
Q ss_pred EEEEE
Q 025583 153 YVRVR 157 (250)
Q Consensus 153 ~i~v~ 157 (250)
.|.|.
T Consensus 84 elrVq 88 (256)
T KOG4207|consen 84 ELRVQ 88 (256)
T ss_pred eeeeh
Confidence 66554
No 27
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.80 E-value=1.1e-18 Score=153.01 Aligned_cols=121 Identities=23% Similarity=0.409 Sum_probs=98.1
Q ss_pred CCcccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccC-CeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 1 MMYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGV 77 (250)
Q Consensus 1 ~kfG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~-gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
.+||+|.+|+|+. +++++|||||+|.++++|++||+.||+..|. |+.|.|..+.
T Consensus 80 ~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~----------------------- 136 (578)
T TIGR01648 80 EKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV----------------------- 136 (578)
T ss_pred HhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc-----------------------
Confidence 3799999999965 7889999999999999999999999999885 7877776542
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCC-eeEEEEEec-----CCCcEEEEEecCHHHHHHHHHHccCC--cccC
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRD-----RGGMTGIVDYTSYDDMKYAIRKLDRS--EFRN 147 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~-v~~~~~~~~-----~~~~~a~v~f~~~~~a~~a~~~l~g~--~~~g 147 (250)
...+|||+|||..+++++|.++|.++++ ++.+.+... ...+||||+|.++++|..|++.|+.. .+.|
T Consensus 137 ---~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~G 211 (578)
T TIGR01648 137 ---DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG 211 (578)
T ss_pred ---cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecC
Confidence 2358999999999999999999999875 444433321 11239999999999999999988643 4556
No 28
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.79 E-value=8.4e-19 Score=151.45 Aligned_cols=136 Identities=18% Similarity=0.367 Sum_probs=111.7
Q ss_pred CcccEEEEEEecCC------CCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCC
Q 025583 2 MYGPIVDIDLKIPP------RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSR 75 (250)
Q Consensus 2 kfG~I~~v~i~~~~------~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (250)
+.|.|++|.|.... .+.|||||+|.++++|+.|+..|+|+.|+|+.|.|.++...+.... +..
T Consensus 538 k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~-----------gK~ 606 (725)
T KOG0110|consen 538 KQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTV-----------GKK 606 (725)
T ss_pred hcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCcccccc-----------ccc
Confidence 57999999995422 2459999999999999999999999999999999999983322111 111
Q ss_pred CCCCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCc
Q 025583 76 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNA 148 (250)
Q Consensus 76 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~ 148 (250)
.+.....+.|+|.|||+.++..+|+.+|..||.+..+.+....+. +||||+|.++.+|..|++.|....|.|+
T Consensus 607 ~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGR 683 (725)
T KOG0110|consen 607 KSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGR 683 (725)
T ss_pred cccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceech
Confidence 122334579999999999999999999999999999999866221 2899999999999999999999999994
No 29
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=5.4e-18 Score=142.30 Aligned_cols=128 Identities=23% Similarity=0.330 Sum_probs=113.9
Q ss_pred CCcccEEEEEEec-CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 1 MMYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSR 79 (250)
Q Consensus 1 ~kfG~I~~v~i~~-~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
+.+|+|+.|.|.. . .+.|||||.|.++++|+.||++||...|.|++|.|.|+....
T Consensus 20 ~~~~~v~s~rvc~d~-tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~---------------------- 76 (369)
T KOG0123|consen 20 SPAGPVLSIRVCRDA-TSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP---------------------- 76 (369)
T ss_pred cccCCceeEEEeecC-CccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC----------------------
Confidence 4689999999954 3 399999999999999999999999999999999999985322
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc--EEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEE
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM--TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 157 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~--~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 157 (250)
..|||.||+..++..+|.++|..||.|+.|.+..+..+- | ||+|++++.|.+|++.|||..+.+ ..|.|-
T Consensus 77 ---~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~----kki~vg 148 (369)
T KOG0123|consen 77 ---SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNG----KKIYVG 148 (369)
T ss_pred ---ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCC----CeeEEe
Confidence 139999999999999999999999999999999887765 7 999999999999999999999999 577665
Q ss_pred ec
Q 025583 158 EY 159 (250)
Q Consensus 158 ~~ 159 (250)
..
T Consensus 149 ~~ 150 (369)
T KOG0123|consen 149 LF 150 (369)
T ss_pred ec
Confidence 44
No 30
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=1.1e-17 Score=128.66 Aligned_cols=154 Identities=22% Similarity=0.313 Sum_probs=119.3
Q ss_pred CCcccEEEEEEe---cCCCCCcEEEEEECChHHHHHHHHhhCCCccCC--eEEEEEEccCCCCCCCCC-------CCCCC
Q 025583 1 MMYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVELAHGGRRHSSSM-------DRYSS 68 (250)
Q Consensus 1 ~kfG~I~~v~i~---~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~g--r~i~V~~~~~~~~~~~~~-------~~~~~ 68 (250)
++||.|.--.|. .++.++|-+||-|...++|+.||+.|||..-.| .+|.|.|+..+....... .....
T Consensus 149 s~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr 228 (360)
T KOG0145|consen 149 SPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARR 228 (360)
T ss_pred HHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCcccc
Confidence 479988877773 388999999999999999999999999987765 589999987553221110 00000
Q ss_pred CCCC-----------------------------C-------CCCCCCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEE
Q 025583 69 YSSG-----------------------------G-------SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFS 112 (250)
Q Consensus 69 ~~~~-----------------------------~-------~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~ 112 (250)
+.+. + .........++|||-||.+++.+.-|.++|.+||.|..+
T Consensus 229 ~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nV 308 (360)
T KOG0145|consen 229 YGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNV 308 (360)
T ss_pred CCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeE
Confidence 1000 0 011233457899999999999999999999999999999
Q ss_pred EEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEe
Q 025583 113 QVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 158 (250)
Q Consensus 113 ~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 158 (250)
.+++|.... ||||.+.+.++|..||..|||..+.+ +.+.|..
T Consensus 309 KvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~----rvLQVsF 354 (360)
T KOG0145|consen 309 KVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD----RVLQVSF 354 (360)
T ss_pred EEEecCCcccccceeEEEecchHHHHHHHHHhcCccccc----eEEEEEE
Confidence 999987644 99999999999999999999999998 5666543
No 31
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=7.5e-17 Score=135.45 Aligned_cols=144 Identities=24% Similarity=0.375 Sum_probs=118.5
Q ss_pred CCcccEEEEEEec-CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 1 MMYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSR 79 (250)
Q Consensus 1 ~kfG~I~~v~i~~-~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
+.||+|++|+|.. ..-++|| ||+|++++.|.+|++.|||..+.|+.|.|.+........... ....
T Consensus 98 ~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~------------~~~~ 164 (369)
T KOG0123|consen 98 SEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPL------------GEYK 164 (369)
T ss_pred HhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccc------------cchh
Confidence 4699999999975 2338999 999999999999999999999999999999887554322100 0122
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCcceeeEEEE
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 156 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 156 (250)
.....++|.+++..++...|.++|..+|.|..+.+..+..+. |+||.|+++++|..|++.|++..+.+ ..+.|
T Consensus 165 ~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~----~~~~V 240 (369)
T KOG0123|consen 165 KRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGD----KELYV 240 (369)
T ss_pred hhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCc----cceee
Confidence 334578999999999999999999999999999999876653 99999999999999999999999987 56666
Q ss_pred Eeccc
Q 025583 157 REYDS 161 (250)
Q Consensus 157 ~~~~~ 161 (250)
.....
T Consensus 241 ~~aqk 245 (369)
T KOG0123|consen 241 GRAQK 245 (369)
T ss_pred ccccc
Confidence 55443
No 32
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.71 E-value=2e-17 Score=139.43 Aligned_cols=146 Identities=19% Similarity=0.279 Sum_probs=115.4
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGV 77 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
+.+|+|.+|.|+. ++.++|.|||+|.+.+....|| .|.|+.+.|.+|.|......+...... .....+.+.
T Consensus 201 s~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sEaeknr~a~~--s~a~~~k~~--- 274 (549)
T KOG0147|consen 201 SIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSEAEKNRAANA--SPALQGKGF--- 274 (549)
T ss_pred HhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccHHHHHHHHhc--ccccccccc---
Confidence 3689999999953 7789999999999999999999 899999999999999876543321100 000111111
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
..+...|+|+||..++++.+|..+|+.||.|..|.+..+... +||||+|.+.++|.+|++.|||.+|.|+ .
T Consensus 275 -~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr----~ 349 (549)
T KOG0147|consen 275 -TGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGR----L 349 (549)
T ss_pred -ccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCc----e
Confidence 112223899999999999999999999999999999988632 2999999999999999999999999994 5
Q ss_pred EEEE
Q 025583 154 VRVR 157 (250)
Q Consensus 154 i~v~ 157 (250)
|.|.
T Consensus 350 ikV~ 353 (549)
T KOG0147|consen 350 IKVS 353 (549)
T ss_pred EEEE
Confidence 5553
No 33
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.71 E-value=2.9e-16 Score=119.10 Aligned_cols=145 Identities=19% Similarity=0.290 Sum_probs=115.2
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCC-----CC---------
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMD-----RY--------- 66 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~-----~~--------- 66 (250)
++||+|++|....+.+.+|.|||.|.+.+.|-.|+.+|+|..+.|+++.|++++.+...-.... ..
T Consensus 35 sqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~ 114 (221)
T KOG4206|consen 35 SQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILA 114 (221)
T ss_pred HhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhccCceeccccCcccccccc
Confidence 5899999999988999999999999999999999999999999999999999985432211100 00
Q ss_pred ---------CCCCC--CCCC-----CCCCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCH
Q 025583 67 ---------SSYSS--GGSR-----GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSY 130 (250)
Q Consensus 67 ---------~~~~~--~~~~-----~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~ 130 (250)
+.+.. .... .+..++...+++.|||..++.+.|..+|.+|.....+.+.....+ .|||+|.+.
T Consensus 115 ~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~-iAfve~~~d 193 (221)
T KOG4206|consen 115 RIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSG-IAFVEFLSD 193 (221)
T ss_pred ccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCCc-eeEEecchh
Confidence 00000 0000 123566779999999999999999999999998888887765544 799999999
Q ss_pred HHHHHHHHHccCCccc
Q 025583 131 DDMKYAIRKLDRSEFR 146 (250)
Q Consensus 131 ~~a~~a~~~l~g~~~~ 146 (250)
..|..|...+++..+.
T Consensus 194 ~~a~~a~~~lq~~~it 209 (221)
T KOG4206|consen 194 RQASAAQQALQGFKIT 209 (221)
T ss_pred hhhHHHhhhhccceec
Confidence 9999999999998876
No 34
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.69 E-value=2.4e-16 Score=117.54 Aligned_cols=55 Identities=42% Similarity=0.697 Sum_probs=51.9
Q ss_pred CcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCC
Q 025583 2 MYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 56 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~ 56 (250)
|||.|.||+|+. |+.++|||||-|.+..||+.|+++|+|.+|+|+.|.|++|...
T Consensus 36 kYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~aryg 93 (256)
T KOG4207|consen 36 KYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARYG 93 (256)
T ss_pred HhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhcC
Confidence 799999999975 8999999999999999999999999999999999999999643
No 35
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=1.6e-14 Score=105.17 Aligned_cols=56 Identities=52% Similarity=0.851 Sum_probs=51.4
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
++||+|.+|+|.. ++.|||||||+++.||+.|+..|||..|+|..|.|+++.+...
T Consensus 32 ~~yG~lrsvWvAr--nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 32 SKYGPLRSVWVAR--NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred HhcCcceeEEEee--cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 4799999999975 6799999999999999999999999999999999999987654
No 36
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.62 E-value=4.7e-15 Score=125.26 Aligned_cols=147 Identities=20% Similarity=0.350 Sum_probs=105.8
Q ss_pred CcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCC------CC--CCCCC-
Q 025583 2 MYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSS------MD--RYSSY- 69 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~------~~--~~~~~- 69 (250)
.||.|..|.++. ||.++||+||+|.+.++|.+|+..|||..|.|+.|+|......-..... .+ .....
T Consensus 301 pfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~ 380 (549)
T KOG0147|consen 301 PFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLS 380 (549)
T ss_pred CcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccc
Confidence 499999999964 8999999999999999999999999999999999999887543322211 00 00000
Q ss_pred -CCCC------------------------------------------CCCCCC-------CCCceEEEeCCCCcc--C--
Q 025583 70 -SSGG------------------------------------------SRGVSR-------RSDYRVLVTGLPSSA--S-- 95 (250)
Q Consensus 70 -~~~~------------------------------------------~~~~~~-------~~~~~l~v~~lp~~~--~-- 95 (250)
+..+ ....+. .+.-++.+.|+-... +
T Consensus 381 ~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~ 460 (549)
T KOG0147|consen 381 LGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEP 460 (549)
T ss_pred cccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCc
Confidence 0000 000011 222344445542211 1
Q ss_pred ------HHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcc
Q 025583 96 ------WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 149 (250)
Q Consensus 96 ------~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~ 149 (250)
.++|.+.+.++|.|+.|.+..+..+ +.||.|.+.+.|..|+..|||.+|.|+.
T Consensus 461 n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g-~VYvrc~s~~~A~~a~~alhgrWF~gr~ 519 (549)
T KOG0147|consen 461 NWDQEIREDVIEECGKHGKVCHIFVDKNSAG-CVYVRCPSAEAAGTAVKALHGRWFAGRM 519 (549)
T ss_pred chhhHHHHHHHHHHHhcCCeeEEEEccCCCc-eEEEecCcHHHHHHHHHHHhhhhhccce
Confidence 2588889999999999999888764 8999999999999999999999999953
No 37
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.58 E-value=4.7e-14 Score=103.69 Aligned_cols=80 Identities=25% Similarity=0.364 Sum_probs=70.0
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 154 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 154 (250)
....++|||+|||..+++++|+++|.+||.|..+.+..+... .||||+|.+.++|+.|++.||+..|+| +.|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G----r~l 106 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG----RHI 106 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC----EEE
Confidence 345568999999999999999999999999999999877543 299999999999999999999999999 678
Q ss_pred EEEecccC
Q 025583 155 RVREYDSR 162 (250)
Q Consensus 155 ~v~~~~~~ 162 (250)
.|.....+
T Consensus 107 ~V~~a~~~ 114 (144)
T PLN03134 107 RVNPANDR 114 (144)
T ss_pred EEEeCCcC
Confidence 87766443
No 38
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.57 E-value=3.3e-13 Score=119.11 Aligned_cols=55 Identities=25% Similarity=0.454 Sum_probs=50.6
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 55 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~ 55 (250)
.+||+|++|.|.. ++.++|||||+|.+.++|.+||..|||..|+|+.|.|.++..
T Consensus 226 s~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 226 EAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred hhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 3799999999964 678999999999999999999999999999999999998764
No 39
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.56 E-value=1.2e-14 Score=118.33 Aligned_cols=132 Identities=18% Similarity=0.306 Sum_probs=108.1
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGV 77 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
.+||+|.+|.++. ++.++||+||+|++++....+| ......|+|+.|.+..+.+....... .
T Consensus 28 ~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k~av~r~~~~~~--------------~ 92 (311)
T KOG4205|consen 28 SQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPKRAVSREDQTKV--------------G 92 (311)
T ss_pred cccCceeeEEEeccCCCCCcccccceecCCCcchheee-cccccccCCccccceeccCccccccc--------------c
Confidence 4799999999965 8899999999999999999998 45667799999999888665432220 0
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCc
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNA 148 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~ 148 (250)
......+|||++||..+++.+++++|.+||.|..+.++.+.... |+||.|.+++.+.+++. ..-..|++.
T Consensus 93 ~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk 166 (311)
T KOG4205|consen 93 RHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGK 166 (311)
T ss_pred cccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCc
Confidence 11244589999999999999999999999999988888886654 99999999999998875 666777884
No 40
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=4.5e-14 Score=116.06 Aligned_cols=74 Identities=22% Similarity=0.276 Sum_probs=65.9
Q ss_pred CceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEE
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 157 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 157 (250)
+..|||.+||.+.-..+|...|..||.|+..+++.+..++ |+||.|++..+|..||..|||..+.+. .++|.
T Consensus 424 GanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~K----rlkVQ 499 (510)
T KOG0144|consen 424 GANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSK----RLKVQ 499 (510)
T ss_pred ccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccc----cceEE
Confidence 3469999999999999999999999999999999887766 999999999999999999999999994 45555
Q ss_pred ec
Q 025583 158 EY 159 (250)
Q Consensus 158 ~~ 159 (250)
..
T Consensus 500 lk 501 (510)
T KOG0144|consen 500 LK 501 (510)
T ss_pred ee
Confidence 43
No 41
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=7.8e-14 Score=108.12 Aligned_cols=76 Identities=17% Similarity=0.242 Sum_probs=68.3
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEEE
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 155 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 155 (250)
+.++.|||-.||.+....+|...|-.||.|+...++.|..++ ||||.|+++..|+.||..|||..|.- ..++
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGM----KRLK 358 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGM----KRLK 358 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhh----hhhh
Confidence 456899999999999999999999999999999999887766 99999999999999999999999988 5566
Q ss_pred EEec
Q 025583 156 VREY 159 (250)
Q Consensus 156 v~~~ 159 (250)
|...
T Consensus 359 VQLK 362 (371)
T KOG0146|consen 359 VQLK 362 (371)
T ss_pred hhhc
Confidence 5544
No 42
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.49 E-value=3.4e-13 Score=86.84 Aligned_cols=64 Identities=22% Similarity=0.430 Sum_probs=58.9
Q ss_pred EEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCc
Q 025583 85 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNA 148 (250)
Q Consensus 85 l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~ 148 (250)
|||+|||..+++++|.++|.+||.|..+.+..+..+. +|||+|.+.++|..|++.|+|..+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~ 67 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGR 67 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECcc
Confidence 7999999999999999999999999999998863332 999999999999999999999999993
No 43
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.47 E-value=7.5e-13 Score=100.13 Aligned_cols=131 Identities=18% Similarity=0.255 Sum_probs=94.9
Q ss_pred CCcEEEEEECChHHHHHHHHhhCCCccC---CeEEEEEEccCCCCCCCCC--CCCC---CCCC-------C---------
Q 025583 17 PPGYAFLEFEDYRDAEDAIRGRDGYNFD---GYRLRVELAHGGRRHSSSM--DRYS---SYSS-------G--------- 72 (250)
Q Consensus 17 ~~g~aFV~f~~~e~A~~A~~~l~g~~~~---gr~i~V~~~~~~~~~~~~~--~~~~---~~~~-------~--------- 72 (250)
++.+|||.|.+.++|..|+.+|||+.|+ +..|+|++++...+..... ..++ .+.. .
T Consensus 76 ~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~ 155 (284)
T KOG1457|consen 76 CKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDE 155 (284)
T ss_pred ccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccc
Confidence 3489999999999999999999999997 8899999997543221110 0000 0000 0
Q ss_pred -----------C----------------------------------CCCCCCCCCceEEEeCCCCccCHHHHHHHhhccC
Q 025583 73 -----------G----------------------------------SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAG 107 (250)
Q Consensus 73 -----------~----------------------------------~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g 107 (250)
+ ..+.......+|||.||..++++++|+.+|..|-
T Consensus 156 ~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~ 235 (284)
T KOG1457|consen 156 GLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYP 235 (284)
T ss_pred cccCccccCCccccccCCCccccchhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCC
Confidence 0 0000111124799999999999999999999998
Q ss_pred CeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccC
Q 025583 108 DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 147 (250)
Q Consensus 108 ~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g 147 (250)
......|........||++|++.+.|..|+..|+|..|..
T Consensus 236 gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~s~ 275 (284)
T KOG1457|consen 236 GFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLLSS 275 (284)
T ss_pred CceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcceecc
Confidence 7766666544333389999999999999999999987754
No 44
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=4.5e-12 Score=99.85 Aligned_cols=75 Identities=19% Similarity=0.220 Sum_probs=66.7
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 154 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 154 (250)
..+-.+|||.-|++.+++..|+..|..||+|..+.|+.+.-++ ||||+|+.+-++..|.+..+|.+|+|+ .|
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgr----ri 173 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGR----RI 173 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCc----EE
Confidence 3566799999999999999999999999999999999884433 999999999999999999999999994 55
Q ss_pred EEE
Q 025583 155 RVR 157 (250)
Q Consensus 155 ~v~ 157 (250)
-|.
T Consensus 174 ~VD 176 (335)
T KOG0113|consen 174 LVD 176 (335)
T ss_pred EEE
Confidence 554
No 45
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.46 E-value=4.1e-13 Score=82.58 Aligned_cols=51 Identities=33% Similarity=0.587 Sum_probs=45.9
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEc
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 53 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~ 53 (250)
++||+|..|.+.... .++|||+|.+.++|+.|+..|||..|+|++|.|+++
T Consensus 6 ~~fG~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 6 SKFGEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp TTTS-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred CCcccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 589999999997543 699999999999999999999999999999999985
No 46
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.46 E-value=3.3e-12 Score=104.54 Aligned_cols=151 Identities=18% Similarity=0.238 Sum_probs=115.0
Q ss_pred cccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCC-C----CCCC-------
Q 025583 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDR-Y----SSYS------- 70 (250)
Q Consensus 3 fG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~-~----~~~~------- 70 (250)
||+|..|+|...+ +-.|+|+|.+..+|+.|+..|+|..|.|+.|.|.+++...-....... . ..|.
T Consensus 322 YGdVqRVkil~nk--kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrf 399 (492)
T KOG1190|consen 322 YGDVQRVKILYNK--KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRF 399 (492)
T ss_pred hcceEEEEeeecC--CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhc
Confidence 8999999997533 578999999999999999999999999999999998755433222111 1 1111
Q ss_pred -CCC--CCCCCCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccC
Q 025583 71 -SGG--SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 147 (250)
Q Consensus 71 -~~~--~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g 147 (250)
..+ .+...-++..+|++.|+|..+++++|++.|.+-|...........+.++|.+.+++.|+|..|+-.|++..+.+
T Consensus 400 kkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lge 479 (492)
T KOG1190|consen 400 KKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGE 479 (492)
T ss_pred cCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCC
Confidence 111 11122345568999999999999999999999998766666655555599999999999999999999988876
Q ss_pred cceeeEEEEEe
Q 025583 148 AFSRSYVRVRE 158 (250)
Q Consensus 148 ~~~~~~i~v~~ 158 (250)
. -.++|..
T Consensus 480 n---~hlRvSF 487 (492)
T KOG1190|consen 480 N---HHLRVSF 487 (492)
T ss_pred C---ceEEEEe
Confidence 3 4555543
No 47
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.45 E-value=2e-12 Score=108.31 Aligned_cols=140 Identities=22% Similarity=0.263 Sum_probs=100.1
Q ss_pred cEEEEEEec-CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 025583 5 PIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDY 83 (250)
Q Consensus 5 ~I~~v~i~~-~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (250)
.|..+.+.. +|++.|-|||+|+++|++++|+ +.|-..+..+-|.|..+.............+ . ......
T Consensus 35 ~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Al-kkdR~~mg~RYIEVf~~~~~e~d~~~~~~g~-------~--s~~~d~ 104 (510)
T KOG4211|consen 35 GIENLEIPRRNGRPSGEAYVEFTSEEDVEKAL-KKDRESMGHRYIEVFTAGGAEADWVMRPGGP-------N--SSANDG 104 (510)
T ss_pred ceeEEEEeccCCCcCcceEEEeechHHHHHHH-HhhHHHhCCceEEEEccCCccccccccCCCC-------C--CCCCCc
Confidence 577777765 6999999999999999999999 5799999999999988865544222111110 0 013455
Q ss_pred eEEEeCCCCccCHHHHHHHhhccCCeeE-EEEEecCCC---cEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEec
Q 025583 84 RVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 159 (250)
Q Consensus 84 ~l~v~~lp~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~---~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~ 159 (250)
.|.+.+||+.|+++||.+||.-.--|.. +.+..+..+ ..|||.|++++.|+.||.. |...| |+ +.|.|...
T Consensus 105 vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~i-Gh---RYIEvF~S 179 (510)
T KOG4211|consen 105 VVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENI-GH---RYIEVFRS 179 (510)
T ss_pred eEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhh-cc---ceEEeehh
Confidence 8889999999999999999985443332 223333322 2899999999999999863 33344 43 77877643
No 48
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.41 E-value=2.2e-12 Score=94.86 Aligned_cols=59 Identities=29% Similarity=0.518 Sum_probs=53.1
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 59 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~ 59 (250)
.+||+|.+|.|+. +++++|||||+|+++++|+.||+.||+..|+|+.|.|+++......
T Consensus 56 ~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~~~~ 117 (144)
T PLN03134 56 AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSA 117 (144)
T ss_pred hcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcCCCC
Confidence 3799999999964 7789999999999999999999999999999999999999765443
No 49
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=1.1e-12 Score=104.59 Aligned_cols=79 Identities=19% Similarity=0.232 Sum_probs=71.1
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc--EEEEEecCHHHHHHHHHHccCCcccCcceeeEEE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM--TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 155 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~--~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 155 (250)
......+|+|.|||+...+.||..+|.+||.|..|+|+.+..|. ||||+|++.++|++|.++|||..+.| ++|.
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEG----RkIE 167 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEG----RKIE 167 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeec----eEEE
Confidence 34556799999999999999999999999999999999886554 99999999999999999999999999 7888
Q ss_pred EEecc
Q 025583 156 VREYD 160 (250)
Q Consensus 156 v~~~~ 160 (250)
|....
T Consensus 168 Vn~AT 172 (376)
T KOG0125|consen 168 VNNAT 172 (376)
T ss_pred Eeccc
Confidence 87543
No 50
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.37 E-value=3.5e-13 Score=109.59 Aligned_cols=141 Identities=16% Similarity=0.095 Sum_probs=90.4
Q ss_pred cccEEEEEEec------CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCC----CCC----CCC
Q 025583 3 YGPIVDIDLKI------PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSS----MDR----YSS 68 (250)
Q Consensus 3 fG~I~~v~i~~------~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~----~~~----~~~ 68 (250)
.|+|.++.|.- -......|||.|.|...+..|. .|.+++|-++.|.|.+.-....+... ... ++.
T Consensus 31 lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~~~~~~p~r~af~~l~~~navprl 109 (479)
T KOG4676|consen 31 LGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPYGDEVIPDRFAFVELADQNAVPRL 109 (479)
T ss_pred ccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEecCCCCCccHHHHHhcCcccccccc
Confidence 36777777621 1233569999999999999998 57777777777777665432222110 000 000
Q ss_pred CCCCCC-----------------C-CCCCCC----------CceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC
Q 025583 69 YSSGGS-----------------R-GVSRRS----------DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG 120 (250)
Q Consensus 69 ~~~~~~-----------------~-~~~~~~----------~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~ 120 (250)
...++- . .|+.++ ..+++|++|+..+...++.+.|..+|+|.+.++......
T Consensus 110 l~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s 189 (479)
T KOG4676|consen 110 LPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRS 189 (479)
T ss_pred cCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCC
Confidence 000000 0 011111 135889999999999999999999999999988766655
Q ss_pred cEEEEEecCHHHHHHHHHHccCCcc
Q 025583 121 MTGIVDYTSYDDMKYAIRKLDRSEF 145 (250)
Q Consensus 121 ~~a~v~f~~~~~a~~a~~~l~g~~~ 145 (250)
.++.|+|........|+. ++|.++
T Consensus 190 ~~c~~sf~~qts~~halr-~~gre~ 213 (479)
T KOG4676|consen 190 SSCSHSFRKQTSSKHALR-SHGRER 213 (479)
T ss_pred cchhhhHhhhhhHHHHHH-hcchhh
Confidence 578899998888888876 455544
No 51
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.37 E-value=4.6e-12 Score=106.11 Aligned_cols=77 Identities=25% Similarity=0.333 Sum_probs=67.8
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
.....++|||+|||.++++++|+++|..||+|+.+.|+.+... .||||+|.++++|..|++.|++..+.+ ..
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~g----r~ 178 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRN----KR 178 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCC----ce
Confidence 4456789999999999999999999999999999999887543 299999999999999999999999998 56
Q ss_pred EEEEe
Q 025583 154 VRVRE 158 (250)
Q Consensus 154 i~v~~ 158 (250)
|.|..
T Consensus 179 i~V~~ 183 (346)
T TIGR01659 179 LKVSY 183 (346)
T ss_pred eeeec
Confidence 66653
No 52
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.36 E-value=6.9e-12 Score=98.87 Aligned_cols=74 Identities=15% Similarity=0.232 Sum_probs=65.8
Q ss_pred CceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCC-CcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEecc
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 160 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~ 160 (250)
..+|||+|||+.+++++|+++|..||.|..+.|..+.. .+||||+|.++++|..|+. |+|..|.| +.|.|....
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~g----r~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVD----QSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCC----ceEEEEecc
Confidence 35899999999999999999999999999999988763 3499999999999999995 99999999 577776543
No 53
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.35 E-value=4.9e-11 Score=98.61 Aligned_cols=146 Identities=23% Similarity=0.301 Sum_probs=109.5
Q ss_pred CcccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCC---------CCC------
Q 025583 2 MYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSS---------SMD------ 64 (250)
Q Consensus 2 kfG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~---------~~~------ 64 (250)
|.|+|+.|.|.. .++++|+|.|||+++|.+++|+++||...+.|++|.|.-......... ...
T Consensus 68 kvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q 147 (608)
T KOG4212|consen 68 KVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQ 147 (608)
T ss_pred hcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCchhhhhhhheeeccCcccccCccee
Confidence 579999999964 889999999999999999999999999999999999976543111000 000
Q ss_pred -----------------CC---------------CCCCCC----C--------------CCCCCCCCCceEEEeCCCCcc
Q 025583 65 -----------------RY---------------SSYSSG----G--------------SRGVSRRSDYRVLVTGLPSSA 94 (250)
Q Consensus 65 -----------------~~---------------~~~~~~----~--------------~~~~~~~~~~~l~v~~lp~~~ 94 (250)
+. ..+... . ...-.++....+||.||.+.+
T Consensus 148 ~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~v 227 (608)
T KOG4212|consen 148 GGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKV 227 (608)
T ss_pred cccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhhhhhccCCCCCccceeeeecccccc
Confidence 00 000000 0 000022334578999999999
Q ss_pred CHHHHHHHhhccCCeeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccC
Q 025583 95 SWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRN 147 (250)
Q Consensus 95 ~~~~l~~~f~~~g~v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g 147 (250)
....|++.|.-.|.|+.+.+..++.+. |+.++|..+-+|..||.+|++.-+..
T Consensus 228 g~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~ 283 (608)
T KOG4212|consen 228 GNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFD 283 (608)
T ss_pred chHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCcc
Confidence 999999999999999999888776554 99999999999999999999865554
No 54
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=5.2e-12 Score=88.21 Aligned_cols=70 Identities=21% Similarity=0.344 Sum_probs=65.3
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCc
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNA 148 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~ 148 (250)
....++|||.++...+++++|.+.|..||+|..+++..+..++ ||.|+|++.++|+.|+..|||..|.|+
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q 142 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQ 142 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCC
Confidence 4567899999999999999999999999999999999887655 999999999999999999999999995
No 55
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.33 E-value=1.6e-11 Score=79.05 Aligned_cols=64 Identities=27% Similarity=0.478 Sum_probs=57.1
Q ss_pred EEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCc
Q 025583 85 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNA 148 (250)
Q Consensus 85 l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~ 148 (250)
|+|+|||..+++++|.++|..+|.|..+.+..+..+. +|||+|.++++|..|++.+++..+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~ 67 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGR 67 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCE
Confidence 6899999999999999999999999999999886532 999999999999999999999999993
No 56
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=4.7e-12 Score=93.20 Aligned_cols=79 Identities=19% Similarity=0.248 Sum_probs=69.8
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc-EEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEec
Q 025583 81 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM-TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 159 (250)
Q Consensus 81 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~-~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~ 159 (250)
...+|+|+|||.++.+.+|+++|-+||.|..|++...+... ||||+|+++.+|+.||..-+|..++| ..|.|+..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg----~rLRVEfp 80 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDG----CRLRVEFP 80 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCc----ceEEEEec
Confidence 34689999999999999999999999999999987655433 99999999999999999999999999 78888876
Q ss_pred ccCC
Q 025583 160 DSRR 163 (250)
Q Consensus 160 ~~~r 163 (250)
...+
T Consensus 81 rggr 84 (241)
T KOG0105|consen 81 RGGR 84 (241)
T ss_pred cCCC
Confidence 6554
No 57
>smart00361 RRM_1 RNA recognition motif.
Probab=99.32 E-value=6.8e-12 Score=80.76 Aligned_cols=49 Identities=29% Similarity=0.520 Sum_probs=44.0
Q ss_pred CcccEEEEE-Eec---C--CCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEE
Q 025583 2 MYGPIVDID-LKI---P--PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 50 (250)
Q Consensus 2 kfG~I~~v~-i~~---~--~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V 50 (250)
+||+|.+|. |.. + +.++|||||+|.+.++|.+|+..|||..|+|+.|.+
T Consensus 15 ~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 15 YFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred hcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 799999995 422 3 789999999999999999999999999999999986
No 58
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=2e-11 Score=106.45 Aligned_cols=145 Identities=19% Similarity=0.225 Sum_probs=107.2
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCC--CCC---CCCC-CCCCCC---
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH--SSS---MDRY-SSYSSG--- 72 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~--~~~---~~~~-~~~~~~--- 72 (250)
.||+|..|.|+.. .--|+|+|.++.+|.+|+..|....+...+|.++++...... +.. .... ......
T Consensus 408 ~fG~i~rvllp~~---G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~E 484 (725)
T KOG0110|consen 408 RFGEIGRVLLPPG---GTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSE 484 (725)
T ss_pred cccccceeecCcc---cceeeeeecCccchHHHHHHhchhhhccCccccccChhhhccCCccccccccccccccccCcce
Confidence 6999999977632 234999999999999999999999999999999887532221 000 0000 000000
Q ss_pred ------C------C--------CC-CCCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC-------cEEE
Q 025583 73 ------G------S--------RG-VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG-------MTGI 124 (250)
Q Consensus 73 ------~------~--------~~-~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-------~~a~ 124 (250)
+ . .. ......+.|||.||++.++.++|..+|...|.|..+.|....+. +|||
T Consensus 485 r~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgF 564 (725)
T KOG0110|consen 485 RVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGF 564 (725)
T ss_pred ecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeE
Confidence 0 0 00 01122334999999999999999999999999999988765543 3999
Q ss_pred EEecCHHHHHHHHHHccCCcccCcc
Q 025583 125 VDYTSYDDMKYAIRKLDRSEFRNAF 149 (250)
Q Consensus 125 v~f~~~~~a~~a~~~l~g~~~~g~~ 149 (250)
|+|.+.++|..|++.|+|..|+||.
T Consensus 565 VEF~~~e~A~~a~k~lqgtvldGH~ 589 (725)
T KOG0110|consen 565 VEFAKPESAQAALKALQGTVLDGHK 589 (725)
T ss_pred EEecCHHHHHHHHHHhcCceecCce
Confidence 9999999999999999999999974
No 59
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.30 E-value=2.5e-11 Score=94.24 Aligned_cols=74 Identities=19% Similarity=0.287 Sum_probs=65.6
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc-EEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEec
Q 025583 81 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM-TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 159 (250)
Q Consensus 81 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~-~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~ 159 (250)
..++|+|+||++.+++++|+++|..||+|..+.|..+.... +|||+|.++++|+.|+ .|+|..|.+ ..|.|...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d----~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVD----QRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCC----ceEEEEeC
Confidence 45799999999999999999999999999999999885443 9999999999999998 599999999 46666654
No 60
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=1.1e-12 Score=96.25 Aligned_cols=59 Identities=32% Similarity=0.506 Sum_probs=54.3
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 59 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~ 59 (250)
+|||+|++|.|.. ||+++||||+.|+++.+...|+++|||..|.|+.|.|+++...+.+
T Consensus 57 SqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~Yk~p 118 (219)
T KOG0126|consen 57 SQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSNYKKP 118 (219)
T ss_pred eccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecccccCC
Confidence 6899999999954 9999999999999999999999999999999999999998765543
No 61
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=2e-11 Score=81.35 Aligned_cols=74 Identities=19% Similarity=0.221 Sum_probs=65.1
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc-EEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEE
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM-TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 157 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~-~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 157 (250)
.-...|||.|||..++.+++.++|.+||.|..+.|-....+. .|||.|++..+|.+|+++|+|..+++ +.+.|-
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~----ryl~vl 90 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDN----RYLVVL 90 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCC----ceEEEE
Confidence 345689999999999999999999999999999997665543 89999999999999999999999999 566553
No 62
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=4.3e-11 Score=91.92 Aligned_cols=78 Identities=26% Similarity=0.282 Sum_probs=71.3
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEEE
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 155 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 155 (250)
....+|.|.||+.++++.+|+++|.+||.|..+.+..+..++ ||||.|.+.++|.+||+.|||.-++. -.|.
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~----LILr 262 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDN----LILR 262 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccce----EEEE
Confidence 456789999999999999999999999999999999987765 99999999999999999999999998 7888
Q ss_pred EEeccc
Q 025583 156 VREYDS 161 (250)
Q Consensus 156 v~~~~~ 161 (250)
|+..++
T Consensus 263 vEwskP 268 (270)
T KOG0122|consen 263 VEWSKP 268 (270)
T ss_pred EEecCC
Confidence 887654
No 63
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=1.4e-11 Score=85.30 Aligned_cols=77 Identities=21% Similarity=0.219 Sum_probs=69.5
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEEE
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 155 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 155 (250)
...++|||+||+..+++++|.++|.++|+|..|.|-.+..+. |+||+|-..++|+.|++-++|..++. +.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLdd----r~ir 109 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDD----RPIR 109 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccc----ccee
Confidence 456799999999999999999999999999999998776654 99999999999999999999999998 7888
Q ss_pred EEecc
Q 025583 156 VREYD 160 (250)
Q Consensus 156 v~~~~ 160 (250)
+..+.
T Consensus 110 ~D~D~ 114 (153)
T KOG0121|consen 110 IDWDA 114 (153)
T ss_pred eeccc
Confidence 87653
No 64
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=2.5e-11 Score=103.92 Aligned_cols=147 Identities=19% Similarity=0.243 Sum_probs=99.2
Q ss_pred cccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCC--CCCCCCCCC--C
Q 025583 3 YGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDR--YSSYSSGGS--R 75 (250)
Q Consensus 3 fG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~--~~~~~~~~~--~ 75 (250)
||.+....+.. ++.++||||.+|.++-.+..|+..|||+.+++..|.|+.+............ .....+-.. .
T Consensus 313 fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~ 392 (500)
T KOG0120|consen 313 FGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMT 392 (500)
T ss_pred cccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhc
Confidence 78888887743 7899999999999999999999999999999999999998654332221111 000000000 0
Q ss_pred CCCCCCCceEEEeCCCC--c-cCH-------HHHHHHhhccCCeeEEEEEec-CCC------cEEEEEecCHHHHHHHHH
Q 025583 76 GVSRRSDYRVLVTGLPS--S-ASW-------QDLKDHMRRAGDVCFSQVFRD-RGG------MTGIVDYTSYDDMKYAIR 138 (250)
Q Consensus 76 ~~~~~~~~~l~v~~lp~--~-~~~-------~~l~~~f~~~g~v~~~~~~~~-~~~------~~a~v~f~~~~~a~~a~~ 138 (250)
.....+...|.+.|+-. . ..+ ++|+..|.+||.|..|.+..+ ... +..||+|.+.++++.|++
T Consensus 393 q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~ 472 (500)
T KOG0120|consen 393 QMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAME 472 (500)
T ss_pred ccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHH
Confidence 11112222233333211 1 122 245556678999999998866 221 278999999999999999
Q ss_pred HccCCcccCcc
Q 025583 139 KLDRSEFRNAF 149 (250)
Q Consensus 139 ~l~g~~~~g~~ 149 (250)
.|+|.+|.+++
T Consensus 473 ~L~GrKF~nRt 483 (500)
T KOG0120|consen 473 ELTGRKFANRT 483 (500)
T ss_pred HccCceeCCcE
Confidence 99999999964
No 65
>PLN03213 repressor of silencing 3; Provisional
Probab=99.26 E-value=3.6e-11 Score=100.93 Aligned_cols=77 Identities=17% Similarity=0.282 Sum_probs=68.6
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCH--HHHHHHHHHccCCcccCcceeeEEEEE
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSY--DDMKYAIRKLDRSEFRNAFSRSYVRVR 157 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~--~~a~~a~~~l~g~~~~g~~~~~~i~v~ 157 (250)
....+|||+||++.+++++|..+|..||.|..+.|+.....+||||+|... .++.+||..|||.++.| +.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKG----R~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKG----GRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecC----ceeEEe
Confidence 345699999999999999999999999999999999665555999999987 68999999999999999 788887
Q ss_pred ecc
Q 025583 158 EYD 160 (250)
Q Consensus 158 ~~~ 160 (250)
..+
T Consensus 84 KAK 86 (759)
T PLN03213 84 KAK 86 (759)
T ss_pred ecc
Confidence 654
No 66
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=4.3e-10 Score=88.87 Aligned_cols=60 Identities=37% Similarity=0.665 Sum_probs=53.7
Q ss_pred CcccEEEEEEe---cCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCC
Q 025583 2 MYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSS 61 (250)
Q Consensus 2 kfG~I~~v~i~---~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~ 61 (250)
+||+|+.|.|+ .|++++|||||+|+++.+...|.+..+|.+|+|+.|.|++-.....+.+
T Consensus 124 ~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERgRTvkgW 186 (335)
T KOG0113|consen 124 KYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERGRTVKGW 186 (335)
T ss_pred hcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEeccccccccc
Confidence 69999999995 4999999999999999999999999999999999999999765544433
No 67
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=8.1e-12 Score=94.38 Aligned_cols=59 Identities=31% Similarity=0.532 Sum_probs=54.3
Q ss_pred CcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCC
Q 025583 2 MYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHS 60 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~ 60 (250)
.||.|.+|.|+. +.+.+|||||+|+..|||..||++||+.+|.|+.|.|.++++.+...
T Consensus 33 PFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~kike 94 (298)
T KOG0111|consen 33 PFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEKIKE 94 (298)
T ss_pred cccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCccccC
Confidence 499999999976 78899999999999999999999999999999999999998776543
No 68
>smart00362 RRM_2 RNA recognition motif.
Probab=99.21 E-value=1.4e-10 Score=74.32 Aligned_cols=64 Identities=23% Similarity=0.397 Sum_probs=58.1
Q ss_pred eEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCC--CcEEEEEecCHHHHHHHHHHccCCcccC
Q 025583 84 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG--GMTGIVDYTSYDDMKYAIRKLDRSEFRN 147 (250)
Q Consensus 84 ~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~--~~~a~v~f~~~~~a~~a~~~l~g~~~~g 147 (250)
+|+|.|||..++.++|+++|.+||.+..+.+..+.. .++|||+|.+.++|..|++.|++..+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~ 66 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGG 66 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECC
Confidence 489999999999999999999999999998887651 1299999999999999999999999988
No 69
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.20 E-value=1e-09 Score=88.42 Aligned_cols=142 Identities=18% Similarity=0.194 Sum_probs=102.8
Q ss_pred CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCC----------------CCCCCCC--
Q 025583 14 PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSS----------------YSSGGSR-- 75 (250)
Q Consensus 14 ~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~----------------~~~~~~~-- 75 (250)
.|+.+|-|+|.|-..|+++.|+..|++..|.|..|.|+.|+...+..-....... +.-....
T Consensus 179 ~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~ 258 (382)
T KOG1548|consen 179 QGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDD 258 (382)
T ss_pred CCCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccc
Confidence 7899999999999999999999999999999999999999755433221111100 0000001
Q ss_pred CCCCCCCceEEEeCCCCc----cC-------HHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCc
Q 025583 76 GVSRRSDYRVLVTGLPSS----AS-------WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 144 (250)
Q Consensus 76 ~~~~~~~~~l~v~~lp~~----~~-------~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~ 144 (250)
........+|.+.|+-.- .+ .++|.+.+.+||.|..|.+...+..+.+.|.|.+.++|..+|..|+|+.
T Consensus 259 ~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 259 PSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 122334567888877431 22 3466677899999999988865554579999999999999999999999
Q ss_pred ccCcceeeEEEEEec
Q 025583 145 FRNAFSRSYVRVREY 159 (250)
Q Consensus 145 ~~g~~~~~~i~v~~~ 159 (250)
|+| +.|...-.
T Consensus 339 fdg----Rql~A~i~ 349 (382)
T KOG1548|consen 339 FDG----RQLTASIW 349 (382)
T ss_pred ecc----eEEEEEEe
Confidence 999 45554433
No 70
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=2.7e-11 Score=96.73 Aligned_cols=54 Identities=22% Similarity=0.464 Sum_probs=50.4
Q ss_pred CcccEEEEEEec-CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccC
Q 025583 2 MYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 55 (250)
Q Consensus 2 kfG~I~~v~i~~-~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~ 55 (250)
|||+|+||.|+. ...+|||+||.|++++||++|-.+|+|..|.|++|.|..+..
T Consensus 119 kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 119 KFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred hhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 799999999964 677999999999999999999999999999999999998864
No 71
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.18 E-value=3.9e-11 Score=94.36 Aligned_cols=72 Identities=21% Similarity=0.345 Sum_probs=67.3
Q ss_pred ceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEecccC
Q 025583 83 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 162 (250)
Q Consensus 83 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 162 (250)
.+|||+|||..+++++|+.+|++||.|+.+.|++| ||||..++...|+.||..||+..|+| ..|.|+..+.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN----YgFVHiEdktaaedairNLhgYtLhg----~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN----YGFVHIEDKTAAEDAIRNLHGYTLHG----VNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc----cceEEeecccccHHHHhhcccceecc----eEEEEEecccc
Confidence 37999999999999999999999999999999999 99999999999999999999999999 88888866544
No 72
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=8.5e-10 Score=91.65 Aligned_cols=116 Identities=19% Similarity=0.223 Sum_probs=87.5
Q ss_pred EEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCccCHHHHHHH
Q 025583 23 LEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDH 102 (250)
Q Consensus 23 V~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~ 102 (250)
-...+.|+|.+||.+-. |..|.|+..+.+-+.+... -.+++....+-|||+.||.++.+++|..+
T Consensus 39 ~~~~~~eaal~al~E~t-----gy~l~ve~gqrk~ggPpP~----------weg~~p~~G~EVfvGkIPrD~~EdeLvpl 103 (506)
T KOG0117|consen 39 AGVQSEEAALKALLERT-----GYTLVVENGQRKYGGPPPG----------WEGPPPPRGCEVFVGKIPRDVFEDELVPL 103 (506)
T ss_pred cccccHHHHHHHHHHhc-----CceEEEeccccccCCCCCc----------ccCCCCCCCceEEecCCCccccchhhHHH
Confidence 33445678888885544 4467887766543332211 11234466789999999999999999999
Q ss_pred hhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEEEE
Q 025583 103 MRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 156 (250)
Q Consensus 103 f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 156 (250)
|++.|+|..+.+++++..+ ||||+|-+.++|+.|++.||+.+|... +.|.|
T Consensus 104 fEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~G---K~igv 158 (506)
T KOG0117|consen 104 FEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPG---KLLGV 158 (506)
T ss_pred HHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCC---CEeEE
Confidence 9999999999999884432 999999999999999999999998643 45544
No 73
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.17 E-value=2e-09 Score=87.61 Aligned_cols=153 Identities=15% Similarity=0.194 Sum_probs=112.1
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCC-------CCCCCCCCCC--
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSS-------MDRYSSYSSG-- 72 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~-------~~~~~~~~~~-- 72 (250)
.||.|+.|+++.|. .|.|.||+.++...+.|+..||+..+.|..|.|.+++..--.+.. ......|...
T Consensus 311 lYGNV~rvkFmkTk--~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkN 388 (494)
T KOG1456|consen 311 LYGNVERVKFMKTK--PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKN 388 (494)
T ss_pred hcCceeeEEEeecc--cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccccc
Confidence 59999999998754 789999999999999999999999999999999998743222110 1111111111
Q ss_pred CC--------CCCCCCCCceEEEeCCCCccCHHHHHHHhhccCC-eeEEEEEecCCCc--EEEEEecCHHHHHHHHHHcc
Q 025583 73 GS--------RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDRGGM--TGIVDYTSYDDMKYAIRKLD 141 (250)
Q Consensus 73 ~~--------~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~~--~a~v~f~~~~~a~~a~~~l~ 141 (250)
++ .....++.+.|+.-|.|..++++.|.++|...+. .+.+.++.-.... -|.+||++.++|..||-.||
T Consensus 389 nRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~kserSssGllEfe~~s~Aveal~~~N 468 (494)
T KOG1456|consen 389 NRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLN 468 (494)
T ss_pred cccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeecccccccccceeeeehHHHHHHHHHHhc
Confidence 11 1223456678999999999999999999987663 4555665444332 78999999999999999999
Q ss_pred CCcccCcceeeEEEE
Q 025583 142 RSEFRNAFSRSYVRV 156 (250)
Q Consensus 142 g~~~~g~~~~~~i~v 156 (250)
...+.+....-...+
T Consensus 469 H~pi~~p~gs~Pfil 483 (494)
T KOG1456|consen 469 HYPIEGPNGSFPFIL 483 (494)
T ss_pred cccccCCCCCCCeee
Confidence 998887654333333
No 74
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.14 E-value=1.6e-09 Score=89.16 Aligned_cols=155 Identities=15% Similarity=0.153 Sum_probs=110.8
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccC--CeEEEEEEccCCCCC--------CCC----CCCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD--GYRLRVELAHGGRRH--------SSS----MDRY 66 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~--gr~i~V~~~~~~~~~--------~~~----~~~~ 66 (250)
++||.|+.|... +++..-.|+|+|.+++.|+.|..+|+|..|. ...|.|++++...-. ... .+-+
T Consensus 172 S~fG~VlKIiTF-~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~g 250 (492)
T KOG1190|consen 172 SKFGFVLKIITF-TKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVG 250 (492)
T ss_pred hhcceeEEEEEE-ecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCC
Confidence 589999988753 3344556999999999999999999998875 356777776521000 000 0000
Q ss_pred ---C-----------------CCCC--C----------CCCCCCCCCCceEEEeCCCC-ccCHHHHHHHhhccCCeeEEE
Q 025583 67 ---S-----------------SYSS--G----------GSRGVSRRSDYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQ 113 (250)
Q Consensus 67 ---~-----------------~~~~--~----------~~~~~~~~~~~~l~v~~lp~-~~~~~~l~~~f~~~g~v~~~~ 113 (250)
+ ++.. . +....+. .+..|.|.||.. .++.+.|-.+|.-||+|..|.
T Consensus 251 d~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~-~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVk 329 (492)
T KOG1190|consen 251 DGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPS-ANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVK 329 (492)
T ss_pred ccccccchhhhccccccccccCCcccCCccchhhcccccccccCC-CceEEEEecCchhccchhHHHHHHhhhcceEEEE
Confidence 0 0000 0 0011111 246778887765 579999999999999999999
Q ss_pred EEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEecccC
Q 025583 114 VFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 162 (250)
Q Consensus 114 ~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 162 (250)
|..+... -|.|.+.+...|+.|++.|+|..+.| +.|+|...+..
T Consensus 330 il~nkkd-~ALIQmsd~~qAqLA~~hL~g~~l~g----k~lrvt~SKH~ 373 (492)
T KOG1190|consen 330 ILYNKKD-NALIQMSDGQQAQLAMEHLEGHKLYG----KKLRVTLSKHT 373 (492)
T ss_pred eeecCCc-ceeeeecchhHHHHHHHHhhcceecC----ceEEEeeccCc
Confidence 9988765 59999999999999999999999999 78888766543
No 75
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=7.5e-10 Score=89.80 Aligned_cols=52 Identities=27% Similarity=0.505 Sum_probs=47.8
Q ss_pred cccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEcc
Q 025583 3 YGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 54 (250)
Q Consensus 3 fG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~ 54 (250)
||+|+.|.|.. ++..+||+||+|.+......|+..||-+.|+|..|.|.-+.
T Consensus 234 FG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 234 FGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 99999999943 67889999999999999999999999999999999997764
No 76
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.13 E-value=1.4e-10 Score=85.36 Aligned_cols=78 Identities=24% Similarity=0.314 Sum_probs=69.3
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCC----CcEEEEEecCHHHHHHHHHHccCCcccCcceeeEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 154 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 154 (250)
.....+|||+||+..++++.|.++|-+.|+|+.+++..+.- .+||||+|.++++|+.|++-||.-.+.| +.|
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYg----rpI 81 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYG----RPI 81 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcC----cee
Confidence 45567999999999999999999999999999999987643 2399999999999999999999999999 788
Q ss_pred EEEecc
Q 025583 155 RVREYD 160 (250)
Q Consensus 155 ~v~~~~ 160 (250)
+|....
T Consensus 82 rv~kas 87 (203)
T KOG0131|consen 82 RVNKAS 87 (203)
T ss_pred EEEecc
Confidence 887654
No 77
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.13 E-value=8.3e-09 Score=84.06 Aligned_cols=150 Identities=20% Similarity=0.217 Sum_probs=109.7
Q ss_pred cccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccC--CeEEEEEEccCCCCC-------CCC-----------
Q 025583 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD--GYRLRVELAHGGRRH-------SSS----------- 62 (250)
Q Consensus 3 fG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~--gr~i~V~~~~~~~~~-------~~~----------- 62 (250)
.|+|+.|.|.. ++--.|+|||++.+.|++|..+|||..|. ..+|+|+++++.+-. .+.
T Consensus 146 ~GkVlRIvIfk--kngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~ 223 (494)
T KOG1456|consen 146 QGKVLRIVIFK--KNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYD 223 (494)
T ss_pred CCceEEEEEEe--ccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCC
Confidence 58999998863 23568999999999999999999999885 568999999743210 000
Q ss_pred ---C--C--C--------CCCCCC-------C---C-------C------C------CCCCCCCceEEEeCCCCc-cCHH
Q 025583 63 ---M--D--R--------YSSYSS-------G---G-------S------R------GVSRRSDYRVLVTGLPSS-ASWQ 97 (250)
Q Consensus 63 ---~--~--~--------~~~~~~-------~---~-------~------~------~~~~~~~~~l~v~~lp~~-~~~~ 97 (250)
. + + +..+++ . + + . .....+...+.|.+|... +..+
T Consensus 224 ~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~d 303 (494)
T KOG1456|consen 224 PGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCD 303 (494)
T ss_pred CCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchh
Confidence 0 0 0 000110 0 0 0 0 012234567888888764 6889
Q ss_pred HHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEec
Q 025583 98 DLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 159 (250)
Q Consensus 98 ~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~ 159 (250)
.|-++|..||.|..+.+++...+ .|.|++.+..+.+.|+..||+..+-| .+|.|...
T Consensus 304 rlFNl~ClYGNV~rvkFmkTk~g-tamVemgd~~aver~v~hLnn~~lfG----~kl~v~~S 360 (494)
T KOG1456|consen 304 RLFNLFCLYGNVERVKFMKTKPG-TAMVEMGDAYAVERAVTHLNNIPLFG----GKLNVCVS 360 (494)
T ss_pred hhhhhhhhcCceeeEEEeecccc-eeEEEcCcHHHHHHHHHHhccCcccc----ceEEEeec
Confidence 99999999999999999988776 69999999999999999999999988 56666543
No 78
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=2.1e-10 Score=89.42 Aligned_cols=74 Identities=20% Similarity=0.329 Sum_probs=66.1
Q ss_pred CceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEE
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 157 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 157 (250)
-..+||+.|...++-++|++.|.+||+|-.+.|++|..+. ||||.|-+.++|+.||..|||.+|.+ +.|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~----R~IRTN 137 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGR----RTIRTN 137 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeecc----ceeecc
Confidence 4578999999999999999999999999999999886644 99999999999999999999999998 566654
Q ss_pred ec
Q 025583 158 EY 159 (250)
Q Consensus 158 ~~ 159 (250)
..
T Consensus 138 WA 139 (321)
T KOG0148|consen 138 WA 139 (321)
T ss_pred cc
Confidence 44
No 79
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=5.3e-11 Score=83.20 Aligned_cols=54 Identities=30% Similarity=0.513 Sum_probs=50.5
Q ss_pred CcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccC
Q 025583 2 MYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 55 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~ 55 (250)
-||+|+.|.|.. ||-.+|||+|+|++.++|+.|+.+|||..|.|.+|.|.||-.
T Consensus 95 dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 95 DYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred hcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 499999999965 888999999999999999999999999999999999999854
No 80
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.12 E-value=3.3e-10 Score=93.82 Aligned_cols=79 Identities=28% Similarity=0.537 Sum_probs=70.4
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhc-cCCeeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCcceeeEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRR-AGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 154 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~-~g~v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 154 (250)
......+||.|||+++.|++|+++|.+ .|+|.||++..+..++ +|.|+|+++|.+++|++.||..++.| +.|
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~G----R~l 116 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNG----REL 116 (608)
T ss_pred ccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccC----ceE
Confidence 334456999999999999999999975 7899999999987766 99999999999999999999999999 788
Q ss_pred EEEeccc
Q 025583 155 RVREYDS 161 (250)
Q Consensus 155 ~v~~~~~ 161 (250)
.|+++..
T Consensus 117 ~vKEd~d 123 (608)
T KOG4212|consen 117 VVKEDHD 123 (608)
T ss_pred EEeccCc
Confidence 8887754
No 81
>smart00360 RRM RNA recognition motif.
Probab=99.10 E-value=7.8e-10 Score=70.54 Aligned_cols=62 Identities=21% Similarity=0.388 Sum_probs=55.7
Q ss_pred EeCCCCccCHHHHHHHhhccCCeeEEEEEecCC----CcEEEEEecCHHHHHHHHHHccCCcccCc
Q 025583 87 VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNA 148 (250)
Q Consensus 87 v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~a~~a~~~l~g~~~~g~ 148 (250)
|.|||..++.++|+++|.+||.|..+.+..+.. .++|||+|.+.++|..|++.|++..+.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~ 66 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGR 66 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCc
Confidence 578999999999999999999999999887654 23999999999999999999999999883
No 82
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=2.4e-10 Score=92.28 Aligned_cols=76 Identities=18% Similarity=0.271 Sum_probs=69.3
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
..++.+.|||..|.+-++.++|+-+|..||.|+.+.++.+..++ ||||+|++.+++++|.-+|++..|+. +.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDD----rR 310 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDD----RR 310 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeecc----ce
Confidence 34667899999999999999999999999999999999987665 99999999999999999999999998 67
Q ss_pred EEEE
Q 025583 154 VRVR 157 (250)
Q Consensus 154 i~v~ 157 (250)
|.|.
T Consensus 311 IHVD 314 (479)
T KOG0415|consen 311 IHVD 314 (479)
T ss_pred EEee
Confidence 7774
No 83
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.08 E-value=2e-09 Score=69.24 Aligned_cols=69 Identities=23% Similarity=0.407 Sum_probs=61.0
Q ss_pred eEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCC---CcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEE
Q 025583 84 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 156 (250)
Q Consensus 84 ~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 156 (250)
+|+|.|||..+++++|.++|..+|.|..+.+..+.. .++|+|+|.+.++|..|++.+++..+.| ..+.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~----~~~~v 72 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGG----RPLRV 72 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECC----eEEEE
Confidence 478999999999999999999999999999987653 2399999999999999999999999888 45544
No 84
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.07 E-value=3.2e-10 Score=72.76 Aligned_cols=48 Identities=35% Similarity=0.653 Sum_probs=44.4
Q ss_pred CcccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEE
Q 025583 2 MYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 49 (250)
Q Consensus 2 kfG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~ 49 (250)
+||.|..|.|.. .+..++||||+|.+.++|+.|++.|||..|+|++|+
T Consensus 21 ~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 21 QFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp TTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred HhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 699999999965 578899999999999999999999999999999885
No 85
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=5.8e-10 Score=85.43 Aligned_cols=74 Identities=14% Similarity=0.198 Sum_probs=62.2
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEEE
Q 025583 81 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 155 (250)
Q Consensus 81 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 155 (250)
.-++|||++|+..+..+.|.++|++||+|+...|+.|...+ ||||+|.+.+.|.+|++.. +-.|+|+..++.|.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLA 88 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchh
Confidence 44689999999999999999999999999999999886654 9999999999999998743 45678865444443
No 86
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.05 E-value=2.4e-09 Score=87.24 Aligned_cols=119 Identities=25% Similarity=0.413 Sum_probs=86.3
Q ss_pred CcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccC--CCCCCCCCCCCCCC--CCCCC
Q 025583 2 MYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG--GRRHSSSMDRYSSY--SSGGS 74 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~--~~~~~~~~~~~~~~--~~~~~ 74 (250)
+||.|..|.|+. ++.++|||||+|.++++|..|+..|+|..|.|+.|.|.+... .............. .....
T Consensus 138 ~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (306)
T COG0724 138 KFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQPASQPRSELSNNLDASFAKKLSRG 217 (306)
T ss_pred hcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccccccccccccccccchhhhcccccc
Confidence 699999999954 689999999999999999999999999999999999999753 11111100000000 00011
Q ss_pred CCCCCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC
Q 025583 75 RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG 120 (250)
Q Consensus 75 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~ 120 (250)
..........+++.+++..+...++...|..+|.+..+.+......
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (306)
T COG0724 218 KALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDG 263 (306)
T ss_pred ccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCC
Confidence 1123345567899999999999999999999999977766655443
No 87
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.8e-10 Score=86.18 Aligned_cols=81 Identities=21% Similarity=0.250 Sum_probs=71.3
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 154 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 154 (250)
.....+|||++|...+++.-|...|-+||.|..+.+..+.... ||||+|+..++|..||..||+.+|.| +.|
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~G----rti 82 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG----RTI 82 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcc----eeE
Confidence 3456699999999999999999999999999999998775433 99999999999999999999999999 788
Q ss_pred EEEecccCC
Q 025583 155 RVREYDSRR 163 (250)
Q Consensus 155 ~v~~~~~~r 163 (250)
+|....+.+
T Consensus 83 rVN~AkP~k 91 (298)
T KOG0111|consen 83 RVNLAKPEK 91 (298)
T ss_pred EEeecCCcc
Confidence 887666554
No 88
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.03 E-value=8.4e-10 Score=87.18 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=50.5
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
++||+|.+|.|+..+..+|||||+|.++++|+.|| .|||..|.|+.|.|.++....
T Consensus 26 S~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 26 SFSGDIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAEDYQ 81 (260)
T ss_pred HhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccCCC
Confidence 47999999999876667899999999999999999 699999999999999986543
No 89
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.02 E-value=5.9e-10 Score=90.89 Aligned_cols=141 Identities=19% Similarity=0.230 Sum_probs=97.9
Q ss_pred CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCC----------CCCC-CCCCCCCCCCCCCCCCCCCCCC
Q 025583 14 PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG----------RRHS-SSMDRYSSYSSGGSRGVSRRSD 82 (250)
Q Consensus 14 ~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~----------~~~~-~~~~~~~~~~~~~~~~~~~~~~ 82 (250)
+|+..|-|||.|+.+++|+.|+.+ |...|+-+.|.+..+... ..+. .....+.........-++....
T Consensus 202 dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~k 280 (508)
T KOG1365|consen 202 DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSK 280 (508)
T ss_pred CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCC
Confidence 788999999999999999999954 555666665555332110 0000 0000000011122233445556
Q ss_pred ceEEEeCCCCccCHHHHHHHhhccC-CeeE--EEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCcceeeEEEE
Q 025583 83 YRVLVTGLPSSASWQDLKDHMRRAG-DVCF--SQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 156 (250)
Q Consensus 83 ~~l~v~~lp~~~~~~~l~~~f~~~g-~v~~--~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 156 (250)
.+|.+.+||+.++.++|.+||..|. .|.+ ++++.+..|. .|||+|.+.++|..|..+.+...... +.|.|
T Consensus 281 dcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~----RYiEv 356 (508)
T KOG1365|consen 281 DCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKS----RYIEV 356 (508)
T ss_pred CeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhccc----ceEEE
Confidence 7899999999999999999999987 4666 8888876654 89999999999999998887776655 67877
Q ss_pred Eec
Q 025583 157 REY 159 (250)
Q Consensus 157 ~~~ 159 (250)
...
T Consensus 357 fp~ 359 (508)
T KOG1365|consen 357 FPC 359 (508)
T ss_pred eec
Confidence 654
No 90
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.02 E-value=2.9e-09 Score=65.29 Aligned_cols=54 Identities=22% Similarity=0.405 Sum_probs=47.1
Q ss_pred HHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEE
Q 025583 99 LKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 157 (250)
Q Consensus 99 l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 157 (250)
|.++|.+||+|..+.+..+. ..+|||+|.+.++|..|+..|||..+.| ..|.|.
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g----~~l~V~ 54 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNG----RPLKVS 54 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETT----EEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECC----cEEEEE
Confidence 67899999999999998776 2399999999999999999999999999 677765
No 91
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=2.2e-09 Score=92.26 Aligned_cols=145 Identities=19% Similarity=0.263 Sum_probs=108.3
Q ss_pred cEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCC---CCCCCCCCCCCCCCCC
Q 025583 5 PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDR---YSSYSSGGSRGVSRRS 81 (250)
Q Consensus 5 ~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 81 (250)
.|+.|.|. ..+.||||+|.+.++|..|+ .+++..+.|.++++.-.......+..... .+.+............
T Consensus 213 ~~~s~~~n---~~~nfa~ie~~s~~~at~~~-~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~ 288 (500)
T KOG0120|consen 213 SFVSVQLN---LEKNFAFIEFRSISEATEAM-ALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDS 288 (500)
T ss_pred ceeeeeec---ccccceeEEecCCCchhhhh-cccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccc
Confidence 36666664 34889999999999999999 79999999999988665443322221111 1111111122233455
Q ss_pred CceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEE
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 157 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 157 (250)
...++|++||...++.++.+++..||.+....++.+... +|||.+|-++.....|+..|||..+.+ ..+.|.
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd----~~lvvq 364 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGD----KKLVVQ 364 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcC----ceeEee
Confidence 668999999999999999999999999988877766553 299999999999999999999999998 455554
No 92
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.98 E-value=8.9e-10 Score=82.83 Aligned_cols=52 Identities=27% Similarity=0.335 Sum_probs=47.7
Q ss_pred ccEEEEEE---ecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccC
Q 025583 4 GPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 55 (250)
Q Consensus 4 G~I~~v~i---~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~ 55 (250)
|.|..+.| ..||+++|||||+|++++.|+.|.+.||+..|.++-|.|.+-.+
T Consensus 75 g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmpp 129 (214)
T KOG4208|consen 75 GTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPP 129 (214)
T ss_pred CeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCc
Confidence 88999998 33999999999999999999999999999999999999988644
No 93
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.98 E-value=7.3e-10 Score=76.88 Aligned_cols=56 Identities=30% Similarity=0.482 Sum_probs=50.5
Q ss_pred CCcccEEEEEE---ecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCC
Q 025583 1 MMYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 56 (250)
Q Consensus 1 ~kfG~I~~v~i---~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~ 56 (250)
+++|+|..|.| ..+..+.|||||+|...++|+.||.-++|+.|+.++|.|++..+-
T Consensus 58 s~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~GF 116 (153)
T KOG0121|consen 58 SKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAGF 116 (153)
T ss_pred HhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccccc
Confidence 47899999999 337788999999999999999999999999999999999997644
No 94
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.95 E-value=2.4e-09 Score=71.54 Aligned_cols=55 Identities=33% Similarity=0.407 Sum_probs=51.2
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCC
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 56 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~ 56 (250)
+||+|..|.|-++...+|.|||.|++..+|.+|++.|+|..++++.|.|-+.++.
T Consensus 41 kyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 41 KYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred cccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 7999999999877788999999999999999999999999999999999987653
No 95
>smart00360 RRM RNA recognition motif.
Probab=98.93 E-value=3e-09 Score=67.76 Aligned_cols=50 Identities=36% Similarity=0.640 Sum_probs=45.2
Q ss_pred CcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEE
Q 025583 2 MYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 51 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~ 51 (250)
+||.|..|.|.. ++.++|||||+|.+.++|..|+..|++..+.|+.|.|.
T Consensus 19 ~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 19 KFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred hhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 699999999964 46789999999999999999999999999999998873
No 96
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.93 E-value=6.8e-09 Score=84.50 Aligned_cols=74 Identities=26% Similarity=0.423 Sum_probs=66.3
Q ss_pred CceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCC-C---cEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEE
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-G---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 157 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~---~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 157 (250)
..+|||+|||..+++++|.++|.+||.+..+.+..+.. + +||||+|.+.++|..|++.|++..|.| ..|.|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~----~~~~v~ 190 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEG----RPLRVQ 190 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECC----ceeEee
Confidence 58999999999999999999999999999998887752 2 299999999999999999999999999 577776
Q ss_pred ec
Q 025583 158 EY 159 (250)
Q Consensus 158 ~~ 159 (250)
..
T Consensus 191 ~~ 192 (306)
T COG0724 191 KA 192 (306)
T ss_pred cc
Confidence 54
No 97
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.93 E-value=1.9e-10 Score=84.63 Aligned_cols=73 Identities=16% Similarity=0.234 Sum_probs=66.9
Q ss_pred CceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEE
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 157 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 157 (250)
..-|||+|||+..++.||.-+|.+||+|+.|.++.+..++ |||+.|+++.....|+..|||..|.| +.|+|.
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~g----RtirVD 110 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILG----RTIRVD 110 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecc----eeEEee
Confidence 4479999999999999999999999999999999987655 99999999999999999999999999 677776
Q ss_pred e
Q 025583 158 E 158 (250)
Q Consensus 158 ~ 158 (250)
.
T Consensus 111 H 111 (219)
T KOG0126|consen 111 H 111 (219)
T ss_pred e
Confidence 4
No 98
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.90 E-value=5.1e-09 Score=81.52 Aligned_cols=56 Identities=16% Similarity=0.117 Sum_probs=50.7
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
++||+|.+|.|...+..++||||+|.++++|+.|+ .|||..|.+++|.|..+....
T Consensus 27 S~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~y~ 82 (243)
T PLN03121 27 SHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQYE 82 (243)
T ss_pred HhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcccc
Confidence 47999999999887788899999999999999999 799999999999999876443
No 99
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.88 E-value=5.8e-09 Score=89.00 Aligned_cols=77 Identities=26% Similarity=0.349 Sum_probs=69.9
Q ss_pred ceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEe
Q 025583 83 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 158 (250)
Q Consensus 83 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 158 (250)
..|||+|+|+++++++|.++|...|.|..+.++.|..++ |||++|.+.++|..|++.|||.++.| +.|+|..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g----r~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNG----RKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCC----ceEEeec
Confidence 689999999999999999999999999999999887655 99999999999999999999999999 6888776
Q ss_pred cccCC
Q 025583 159 YDSRR 163 (250)
Q Consensus 159 ~~~~r 163 (250)
.....
T Consensus 95 ~~~~~ 99 (435)
T KOG0108|consen 95 ASNRK 99 (435)
T ss_pred ccccc
Confidence 54443
No 100
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.87 E-value=6.3e-09 Score=66.84 Aligned_cols=49 Identities=33% Similarity=0.596 Sum_probs=43.6
Q ss_pred CCcccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEE
Q 025583 1 MMYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 49 (250)
Q Consensus 1 ~kfG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~ 49 (250)
.+||.|..|.+.. .+.++|+|||+|.++++|.+|+..++|..|+|+.|.
T Consensus 20 ~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 20 SRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp TTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred HhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 3689999999965 356789999999999999999999999999999874
No 101
>smart00361 RRM_1 RNA recognition motif.
Probab=98.85 E-value=2.1e-08 Score=64.36 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=45.9
Q ss_pred HHHHHHHhh----ccCCeeEEE-EEecCC------CcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEE
Q 025583 96 WQDLKDHMR----RAGDVCFSQ-VFRDRG------GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 156 (250)
Q Consensus 96 ~~~l~~~f~----~~g~v~~~~-~~~~~~------~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 156 (250)
+++|+++|. +||.|..+. +..+.. .++|||+|.+.++|..|++.|||..+.| +.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~g----r~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDG----RTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC----EEEEe
Confidence 467888888 999999885 444332 2299999999999999999999999999 55543
No 102
>smart00362 RRM_2 RNA recognition motif.
Probab=98.84 E-value=1.3e-08 Score=65.04 Aligned_cols=50 Identities=40% Similarity=0.708 Sum_probs=44.8
Q ss_pred CcccEEEEEEec-CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEE
Q 025583 2 MYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 51 (250)
Q Consensus 2 kfG~I~~v~i~~-~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~ 51 (250)
+||+|..|.+.. .+.+.|+|||+|.+.++|+.|+..|+|..|.|+.|.|.
T Consensus 22 ~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 22 KFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred hcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 699999999865 35678999999999999999999999999999998873
No 103
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=3.2e-09 Score=85.90 Aligned_cols=58 Identities=26% Similarity=0.398 Sum_probs=53.3
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
+.||+|..|.|.. ||.+..||||+|++.++|++|.-+|++..|+.+.|+|.|++...+
T Consensus 261 SrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQSVsk 321 (479)
T KOG0415|consen 261 SRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQSVSK 321 (479)
T ss_pred hhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhhhhh
Confidence 5799999999954 899999999999999999999999999999999999999886544
No 104
>PLN03213 repressor of silencing 3; Provisional
Probab=98.80 E-value=9.5e-09 Score=86.64 Aligned_cols=52 Identities=19% Similarity=0.361 Sum_probs=47.8
Q ss_pred CcccEEEEEEec-CCCCCcEEEEEECCh--HHHHHHHHhhCCCccCCeEEEEEEccC
Q 025583 2 MYGPIVDIDLKI-PPRPPGYAFLEFEDY--RDAEDAIRGRDGYNFDGYRLRVELAHG 55 (250)
Q Consensus 2 kfG~I~~v~i~~-~~~~~g~aFV~f~~~--e~A~~A~~~l~g~~~~gr~i~V~~~~~ 55 (250)
.||.|.+|.|+. +| +|||||+|... .++.+||..|||..+.|+.|+|+.+++
T Consensus 33 eFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 33 PMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred hcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 699999999985 55 99999999988 689999999999999999999999873
No 105
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.79 E-value=5.3e-09 Score=80.23 Aligned_cols=53 Identities=28% Similarity=0.429 Sum_probs=47.0
Q ss_pred CcccEEEEEEe---cCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccC
Q 025583 2 MYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 55 (250)
Q Consensus 2 kfG~I~~v~i~---~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~ 55 (250)
|||+|++..|. .+++++||+||.|.|.|.|..|++..|- .|+|+...|.++..
T Consensus 35 qfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~p-iIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 35 QFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNP-IIDGRKANCNLASL 90 (247)
T ss_pred HhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCC-cccccccccchhhh
Confidence 79999999985 3899999999999999999999976554 58999999999865
No 106
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.72 E-value=2e-08 Score=85.76 Aligned_cols=58 Identities=36% Similarity=0.641 Sum_probs=52.5
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
++.|.|.+++++. +|.++|||||+|.++++|+.|+..|||.++.|+.|.|.++...+.
T Consensus 40 ~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~~ 100 (435)
T KOG0108|consen 40 SGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRKN 100 (435)
T ss_pred hccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccccch
Confidence 3679999999964 899999999999999999999999999999999999999875443
No 107
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.66 E-value=1.1e-07 Score=60.87 Aligned_cols=51 Identities=35% Similarity=0.658 Sum_probs=45.0
Q ss_pred CcccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEE
Q 025583 2 MYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 52 (250)
Q Consensus 2 kfG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~ 52 (250)
+||+|..+.+.. ...+.|+|||+|.+.++|..|+..+++..+.|+.|.|.+
T Consensus 22 ~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 22 KFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred hcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 579999999965 225689999999999999999999999999999999864
No 108
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.56 E-value=3.5e-07 Score=72.14 Aligned_cols=75 Identities=24% Similarity=0.319 Sum_probs=66.3
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCcceeeEEEE
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 156 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 156 (250)
...++|.|.|||+.+...||+++|.+||.+..+.+..+..+. .|-|.|...++|..|++.+++..++|. .+.+
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~----~mk~ 156 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGR----PMKI 156 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCc----eeee
Confidence 344789999999999999999999999999999999888774 899999999999999999999999994 4555
Q ss_pred Ee
Q 025583 157 RE 158 (250)
Q Consensus 157 ~~ 158 (250)
..
T Consensus 157 ~~ 158 (243)
T KOG0533|consen 157 EI 158 (243)
T ss_pred EE
Confidence 43
No 109
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.55 E-value=2.3e-07 Score=79.76 Aligned_cols=75 Identities=23% Similarity=0.349 Sum_probs=67.4
Q ss_pred CceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEE
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 157 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 157 (250)
...|||.+|...+...+|+.+|.+||.|+-..|+.+.... |+||++.+.++|.++|+.|+..+|.| +.|.|+
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHG----rmISVE 480 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHG----RMISVE 480 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcc----eeeeee
Confidence 4579999999999999999999999999999998775433 99999999999999999999999999 788887
Q ss_pred ecc
Q 025583 158 EYD 160 (250)
Q Consensus 158 ~~~ 160 (250)
..+
T Consensus 481 kaK 483 (940)
T KOG4661|consen 481 KAK 483 (940)
T ss_pred ecc
Confidence 543
No 110
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.52 E-value=3.1e-07 Score=81.50 Aligned_cols=72 Identities=18% Similarity=0.315 Sum_probs=64.5
Q ss_pred CceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEec
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 159 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~ 159 (250)
.++|||++|+..++++||.++|+.||+|..|.++.+.. +|||.+....+|++|+.+|++..+.+ ..|++.+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~--cAfI~M~~RqdA~kalqkl~n~kv~~----k~Iki~Wa 492 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRG--CAFIKMVRRQDAEKALQKLSNVKVAD----KTIKIAWA 492 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCc--eeEEEEeehhHHHHHHHHHhcccccc----eeeEEeee
Confidence 36899999999999999999999999999999988776 99999999999999999999999988 55555443
No 111
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.50 E-value=5.5e-08 Score=73.90 Aligned_cols=114 Identities=17% Similarity=0.245 Sum_probs=85.4
Q ss_pred CcccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 2 MYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSR 79 (250)
Q Consensus 2 kfG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
+-|+|+.|.|+. .++.+ ||||.|+++-....|+..|||..+.+.+|.|.+-.+..-
T Consensus 32 qaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~sh--------------------- 89 (267)
T KOG4454|consen 32 QAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGNSH--------------------- 89 (267)
T ss_pred ccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccCCCc---------------------
Confidence 458999999975 55666 999999999999999999999999999999987543211
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcc
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEF 145 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~ 145 (250)
.-|...++.+.+.+.|...|.+..+.+..+.++. ++|+++......-.++..+.+..+
T Consensus 90 --------apld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 90 --------APLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred --------chhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 0133456677777888888887777776555432 888888777777777766666544
No 112
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.49 E-value=6.7e-08 Score=73.42 Aligned_cols=74 Identities=15% Similarity=0.101 Sum_probs=65.0
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc--EEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM--TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~--~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
....+|+|+|+-..++++-|.++|.+.|+|+.+.|..+.+++ ||||.|.++.....|++.|||..+.+.+..+.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcc
Confidence 445689999999999999999999999999999998776655 99999999999999999999999988643333
No 113
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.48 E-value=1e-07 Score=85.76 Aligned_cols=124 Identities=15% Similarity=0.169 Sum_probs=103.3
Q ss_pred CcccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 2 MYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSR 79 (250)
Q Consensus 2 kfG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
.||.|.+|.|+. .+.-.-||||.|.+...+-.|..+|.+..|....+.+.+..+. .
T Consensus 395 e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~k----------------------s 452 (975)
T KOG0112|consen 395 ESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQPK----------------------S 452 (975)
T ss_pred hhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccccc----------------------c
Confidence 589999999965 3444679999999999999999999998887766666655331 2
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcc
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 149 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~ 149 (250)
...+.++|++|+..+....|...|..||.|..|.+..... ||+|.|++...++.|++.|-|..|.+-.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~--yayi~yes~~~aq~a~~~~rgap~G~P~ 520 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQP--YAYIQYESPPAAQAATHDMRGAPLGGPP 520 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCc--ceeeecccCccchhhHHHHhcCcCCCCC
Confidence 3345899999999999999999999999998877755444 9999999999999999999999998864
No 114
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.44 E-value=1.1e-06 Score=71.19 Aligned_cols=77 Identities=17% Similarity=0.289 Sum_probs=64.2
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHH-ccCCcccCcceeeEEEEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK-LDRSEFRNAFSRSYVRVR 157 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~-l~g~~~~g~~~~~~i~v~ 157 (250)
...-.+|||++|-..+++.+|.++|.+||+|..+.+..... +|||+|.+.+.|+.|.++ ++...|+| ..|.+.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~--CAFv~ftTR~aAE~Aae~~~n~lvI~G----~Rl~i~ 298 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKG--CAFVTFTTREAAEKAAEKSFNKLVING----FRLKIK 298 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccc--cceeeehhhHHHHHHHHhhcceeeecc----eEEEEE
Confidence 34446899999999999999999999999999999987766 999999999999988765 56566777 677777
Q ss_pred eccc
Q 025583 158 EYDS 161 (250)
Q Consensus 158 ~~~~ 161 (250)
....
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 5544
No 115
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.43 E-value=3.4e-07 Score=71.70 Aligned_cols=65 Identities=23% Similarity=0.311 Sum_probs=58.9
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcc
Q 025583 81 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEF 145 (250)
Q Consensus 81 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~ 145 (250)
.+.+|||+-|.....++||..+|..||+|..+.+....++. +|||.|.+..+|..||..|+|...
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqT 85 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQT 85 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhccccc
Confidence 45589999999999999999999999999999998776654 999999999999999999999754
No 116
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.42 E-value=1.4e-06 Score=66.89 Aligned_cols=72 Identities=15% Similarity=0.218 Sum_probs=61.8
Q ss_pred CceEEEeCCCCccCHHHHHH----HhhccCCeeEEEEEecCC-CcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEE
Q 025583 82 DYRVLVTGLPSSASWQDLKD----HMRRAGDVCFSQVFRDRG-GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 156 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~----~f~~~g~v~~~~~~~~~~-~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 156 (250)
..+|||.||...+..++|+. +|++||.|..|.+..... .+.|||.|.+.+.|..|+..|+|.-+-| ..+++
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFyg----K~mri 84 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYG----KPMRI 84 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccC----chhhe
Confidence 33999999999999999988 999999999888875432 2389999999999999999999999999 55555
Q ss_pred E
Q 025583 157 R 157 (250)
Q Consensus 157 ~ 157 (250)
.
T Consensus 85 q 85 (221)
T KOG4206|consen 85 Q 85 (221)
T ss_pred e
Confidence 4
No 117
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.42 E-value=2.4e-07 Score=71.49 Aligned_cols=61 Identities=23% Similarity=0.347 Sum_probs=57.4
Q ss_pred eEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCc
Q 025583 84 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 148 (250)
Q Consensus 84 ~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~ 148 (250)
.+||++||+.+.+.+|+.||..||.+..+.+... |+||+|++..+|..|+..||+..|.+.
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~g----f~fv~fed~rda~Dav~~l~~~~l~~e 63 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKNG----FGFVEFEDPRDADDAVHDLDGKELCGE 63 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeecc----cceeccCchhhhhcccchhcCceecce
Confidence 6899999999999999999999999988888665 899999999999999999999999995
No 118
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.40 E-value=2.2e-06 Score=65.49 Aligned_cols=69 Identities=19% Similarity=0.180 Sum_probs=56.0
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC-----cEEEEEecCHHHHHHHHHHccCCcccCcc
Q 025583 81 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG-----MTGIVDYTSYDDMKYAIRKLDRSEFRNAF 149 (250)
Q Consensus 81 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~ 149 (250)
...+|||.+||.++...+|..+|..|-.-....+.....+ .+|||.|.+..+|..|++.|||..|+-..
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~ 106 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPET 106 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeecccc
Confidence 3569999999999999999999998865444444433222 39999999999999999999999997643
No 119
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.38 E-value=7.5e-07 Score=72.70 Aligned_cols=145 Identities=21% Similarity=0.205 Sum_probs=100.3
Q ss_pred cccEEEEEEe---cCCCCCcEEEEEECChHHHHHHHHhhCC-CccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 3 YGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDG-YNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVS 78 (250)
Q Consensus 3 fG~I~~v~i~---~~~~~~g~aFV~f~~~e~A~~A~~~l~g-~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
+|.+.++.+. ....++|+++|.|+..+.+..|+. +.+ ..+.+..+...+........... ......
T Consensus 112 ~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~-~s~~~~~~~~~~~~dl~~~~~~~~~n~---------~~~~~~ 181 (285)
T KOG4210|consen 112 AGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALE-ESGSKVLDGNKGEKDLNTRRGLRPKNK---------LSRLSS 181 (285)
T ss_pred hcCcccchhhhhccccccccceeeccccHHHHHHHHH-hhhccccccccccCcccccccccccch---------hccccc
Confidence 4544444442 245679999999999999999995 555 56677766666554332110000 000111
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 154 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 154 (250)
......++|.+|+..++.++|+.+|..+|.|..+.+..+.... ||+|+|.+...+..++.. +...+.+ ..+
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~----~~~ 256 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGG----RPL 256 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccC----ccc
Confidence 2233344599999999999999999999999999998776654 999999999999999886 6667766 556
Q ss_pred EEEecccC
Q 025583 155 RVREYDSR 162 (250)
Q Consensus 155 ~v~~~~~~ 162 (250)
.+......
T Consensus 257 ~~~~~~~~ 264 (285)
T KOG4210|consen 257 RLEEDEPR 264 (285)
T ss_pred ccccCCCC
Confidence 65555444
No 120
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.37 E-value=2.1e-06 Score=64.88 Aligned_cols=69 Identities=16% Similarity=0.173 Sum_probs=58.1
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcc-CCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcc
Q 025583 81 SDYRVLVTGLPSSASWQDLKDHMRRA-GDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAF 149 (250)
Q Consensus 81 ~~~~l~v~~lp~~~~~~~l~~~f~~~-g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~ 149 (250)
...-++|..+|...-+..|..+|.++ |.|..+.+.++..++ ||||+|++++.|.-|.+.||+..+.++-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~l 121 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHL 121 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhe
Confidence 33478899999999999999999998 566777775664433 9999999999999999999999999964
No 121
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.30 E-value=1.7e-06 Score=67.32 Aligned_cols=126 Identities=16% Similarity=0.180 Sum_probs=93.9
Q ss_pred CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCc
Q 025583 14 PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSS 93 (250)
Q Consensus 14 ~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~ 93 (250)
.+...+++|+.|.....-.++...-+++.++-.+|.+--......+ ....-...+.+||.+.|..+
T Consensus 136 p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedP--------------sl~ew~~~DfRIfcgdlgNe 201 (290)
T KOG0226|consen 136 PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDP--------------SLAEWDEDDFRIFCGDLGNE 201 (290)
T ss_pred CCccCcccccCcchhhhhhhhccccccccccCcceeeccccccCCc--------------ccccCccccceeeccccccc
Confidence 4456789999998887777777777777777666444322221111 01112345679999999999
Q ss_pred cCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEE
Q 025583 94 ASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 157 (250)
Q Consensus 94 ~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 157 (250)
++.+.|-..|.+|-......++.+..++ |+||.|.+..++..|+..|+|.-+.. +.|.++
T Consensus 202 vnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgs----rpiklR 265 (290)
T KOG0226|consen 202 VNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGS----RPIKLR 265 (290)
T ss_pred ccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccccc----chhHhh
Confidence 9999999999999887777777664433 99999999999999999999999887 566554
No 122
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.29 E-value=2.2e-06 Score=59.28 Aligned_cols=59 Identities=22% Similarity=0.405 Sum_probs=40.2
Q ss_pred ceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCC
Q 025583 83 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRS 143 (250)
Q Consensus 83 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~ 143 (250)
+.|+|.+++..++.++|+++|.+||.|.+|.+..... .|+|.|.+++.|+.|+.++...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~--~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT--EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S--EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC--EEEEEECCcchHHHHHHHHHhc
Confidence 4788999999999999999999999999999987655 7999999999999999877555
No 123
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.27 E-value=3.6e-06 Score=71.78 Aligned_cols=77 Identities=18% Similarity=0.252 Sum_probs=62.1
Q ss_pred CceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecC--C--CcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEE
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR--G--GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 157 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~--~--~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 157 (250)
...|||.|||.+++..+|+++|..||+|....|.... . ..||||+|.+.+.+..||++- -..+.+ ..+.|+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~----~kl~Ve 362 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGG----RKLNVE 362 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCC----eeEEEE
Confidence 3459999999999999999999999999877765432 1 239999999999999999855 556666 788888
Q ss_pred ecccCC
Q 025583 158 EYDSRR 163 (250)
Q Consensus 158 ~~~~~r 163 (250)
+.....
T Consensus 363 ek~~~~ 368 (419)
T KOG0116|consen 363 EKRPGF 368 (419)
T ss_pred eccccc
Confidence 776543
No 124
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.26 E-value=2.1e-06 Score=70.71 Aligned_cols=63 Identities=14% Similarity=0.224 Sum_probs=51.0
Q ss_pred eEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc-------EEEEEecCHHHHHHHHHHccCCcccC
Q 025583 84 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM-------TGIVDYTSYDDMKYAIRKLDRSEFRN 147 (250)
Q Consensus 84 ~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~-------~a~v~f~~~~~a~~a~~~l~g~~~~g 147 (250)
.|.|.||.+.++.++++.+|...|.|..+.++.+.+.- .|||.|.+...+..|. +|.+..|-+
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvd 78 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVD 78 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeee
Confidence 89999999999999999999999999998887754322 8999999888777763 355555544
No 125
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.23 E-value=1.8e-05 Score=65.20 Aligned_cols=121 Identities=21% Similarity=0.233 Sum_probs=79.6
Q ss_pred CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCc
Q 025583 14 PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSS 93 (250)
Q Consensus 14 ~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~ 93 (250)
.+.-.|.|.|.|.++|.-+.|+ +-+...++++.|.|.-+.+.....- .++.... ...-........|.+.+||++
T Consensus 98 qgrRnge~lvrf~d~e~Rdlal-kRhkhh~g~ryievYka~ge~f~~i---agg~s~e-~~~flsk~~qvivRmRGLPfd 172 (508)
T KOG1365|consen 98 QGRRNGEALVRFVDPEGRDLAL-KRHKHHMGTRYIEVYKATGEEFLKI---AGGTSNE-AAPFLSKENQVIVRMRGLPFD 172 (508)
T ss_pred hhccccceEEEecCchhhhhhh-HhhhhhccCCceeeeccCchhheEe---cCCcccc-CCCCCCcccceEEEecCCCCC
Confidence 4566799999999999999999 4677888999999977654321100 0000000 000011122346777899999
Q ss_pred cCHHHHHHHhhcc----CC---eeEEEEEecCCCcEEEEEecCHHHHHHHHHH
Q 025583 94 ASWQDLKDHMRRA----GD---VCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 139 (250)
Q Consensus 94 ~~~~~l~~~f~~~----g~---v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~ 139 (250)
+++.+|.+||..- |. |.++.-..+..++-|||.|+.+++|+.|+.+
T Consensus 173 at~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 173 ATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred cchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH
Confidence 9999999999632 12 3333332333333899999999999999864
No 126
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.20 E-value=2e-05 Score=66.95 Aligned_cols=55 Identities=18% Similarity=0.187 Sum_probs=44.3
Q ss_pred ceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc---EEEEEecCHHHHHHHHH
Q 025583 83 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIR 138 (250)
Q Consensus 83 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~ 138 (250)
..++..+||+..+..+|.++|...-.+ .++|...+++. .|+|+|++.++|..|+-
T Consensus 282 ~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF~t~edav~Ams 339 (510)
T KOG4211|consen 282 HFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEFATGEDAVGAMG 339 (510)
T ss_pred ceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeecccchhhHhhhc
Confidence 567788999999999999999865443 66666555543 89999999999999975
No 127
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.17 E-value=5.8e-07 Score=80.65 Aligned_cols=109 Identities=26% Similarity=0.317 Sum_probs=86.1
Q ss_pred CcccEEEEEE---ecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 2 MYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVS 78 (250)
Q Consensus 2 kfG~I~~v~i---~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
.||.|..|.| .+.+..+|+|||+|..+++|.+||...++.. .|+
T Consensus 690 ~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~-~gK-------------------------------- 736 (881)
T KOG0128|consen 690 PSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCF-FGK-------------------------------- 736 (881)
T ss_pred ccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhh-hhh--------------------------------
Confidence 3555665555 3478899999999999999999996555443 331
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccC
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRN 147 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g 147 (250)
..|+|.|+|+..|.++|+.+|..+|.+....++...++. .|+|.|.++.++..+...++...+.-
T Consensus 737 ----~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE 804 (881)
T KOG0128|consen 737 ----ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRE 804 (881)
T ss_pred ----hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhh
Confidence 277899999999999999999999998888776554433 89999999999999887777666554
No 128
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=3.1e-05 Score=66.27 Aligned_cols=125 Identities=21% Similarity=0.278 Sum_probs=83.4
Q ss_pred CCc---EEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCC------CCCCCCCCCCCCCCCCCCCCCCceEEE
Q 025583 17 PPG---YAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHS------SSMDRYSSYSSGGSRGVSRRSDYRVLV 87 (250)
Q Consensus 17 ~~g---~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~v 87 (250)
++| |+|+.|+++..+..-|.++.- +...+.+.++...-+.. +.... ..|- .....+..+..+|||
T Consensus 302 pkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~yf~vss~~~k~k~VQIrPW~laD-s~fv--~d~sq~lDprrTVFV 375 (520)
T KOG0129|consen 302 PKGSYGYVFLVFEDERSVQSLLSACSE---GEGNYYFKVSSPTIKDKEVQIRPWVLAD-SDFV--LDHNQPIDPRRTVFV 375 (520)
T ss_pred CCCcccEEEEEecchHHHHHHHHHHhh---cccceEEEEecCcccccceeEEeeEecc-chhh--hccCcccCccceEEe
Confidence 466 999999999998887766553 44444444432221111 00000 0000 012244566779999
Q ss_pred eCCCCccCHHHHHHHhh-ccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHH----ccCCcccC
Q 025583 88 TGLPSSASWQDLKDHMR-RAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRK----LDRSEFRN 147 (250)
Q Consensus 88 ~~lp~~~~~~~l~~~f~-~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~----l~g~~~~g 147 (250)
++||..++.++|..+|. -||.|+++-|..|+.= +-|-|.|.+...-.+||.+ |+..+|+-
T Consensus 376 Ggvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~K 444 (520)
T KOG0129|consen 376 GGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDIDK 444 (520)
T ss_pred cCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccce
Confidence 99999999999999999 6999999999877331 1688999999999999874 45555543
No 129
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.09 E-value=1.3e-05 Score=70.92 Aligned_cols=70 Identities=17% Similarity=0.173 Sum_probs=62.2
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC-------cEEEEEecCHHHHHHHHHHccCCcccCc
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG-------MTGIVDYTSYDDMKYAIRKLDRSEFRNA 148 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-------~~a~v~f~~~~~a~~a~~~l~g~~~~g~ 148 (250)
.+..+.|||+||++.++++.|...|..||+|..+.|+..... .+|||-|.+..+|++|++.|+|..+.+.
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~ 247 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY 247 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee
Confidence 456678999999999999999999999999999999865432 2999999999999999999999998873
No 130
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.08 E-value=2e-05 Score=64.10 Aligned_cols=78 Identities=24% Similarity=0.454 Sum_probs=64.6
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeE--------EEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccC
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRN 147 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g 147 (250)
...++.|||.|||.++|.+++.++|.+||-|.. |.+..+..|. -|.+.|...+.+..|++.|++..|.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 344567999999999999999999999996643 4566665554 78999999999999999999999999
Q ss_pred cceeeEEEEEecc
Q 025583 148 AFSRSYVRVREYD 160 (250)
Q Consensus 148 ~~~~~~i~v~~~~ 160 (250)
..|+|....
T Consensus 211 ----~~~rVerAk 219 (382)
T KOG1548|consen 211 ----KKLRVERAK 219 (382)
T ss_pred ----cEEEEehhh
Confidence 688887543
No 131
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.06 E-value=1e-06 Score=68.81 Aligned_cols=52 Identities=23% Similarity=0.419 Sum_probs=47.4
Q ss_pred CcccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEc
Q 025583 2 MYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 53 (250)
Q Consensus 2 kfG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~ 53 (250)
|||+|+.++|.. ..+..|-+||.|..+|+|++|+..||+.+|.|++|..+++
T Consensus 92 kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 92 KYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 799999998832 4567899999999999999999999999999999999987
No 132
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.05 E-value=4.6e-06 Score=71.74 Aligned_cols=67 Identities=21% Similarity=0.279 Sum_probs=60.6
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCc
Q 025583 81 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 148 (250)
Q Consensus 81 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~ 148 (250)
...+|+|-|||..++.++|..+|+.||+|..+.......+ ..||+|-+.-+|+.|++.|++.++.|.
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~-~~~v~FyDvR~A~~Alk~l~~~~~~~~ 140 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRG-IVFVEFYDVRDAERALKALNRREIAGK 140 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCc-eEEEEEeehHhHHHHHHHHHHHHhhhh
Confidence 3458999999999999999999999999999877776666 699999999999999999999999884
No 133
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.99 E-value=5.4e-05 Score=49.05 Aligned_cols=67 Identities=16% Similarity=0.225 Sum_probs=44.6
Q ss_pred ceEEEeCCCCccCHHHHH----HHhhccC-CeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEE
Q 025583 83 YRVLVTGLPSSASWQDLK----DHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 157 (250)
Q Consensus 83 ~~l~v~~lp~~~~~~~l~----~~f~~~g-~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 157 (250)
..|+|.|||.......|. .++..+| .|..+. +..|+|.|.+++.|..|.+.|+|..+-| ..|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~------~~tAilrF~~~~~A~RA~KRmegEdVfG----~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS------GGTAILRFPNQEFAERAQKRMEGEDVFG----NKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSS----S--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe------CCEEEEEeCCHHHHHHHHHhhccccccc----ceEEEE
Confidence 368999999988776555 5555666 565552 1279999999999999999999999999 688876
Q ss_pred ec
Q 025583 158 EY 159 (250)
Q Consensus 158 ~~ 159 (250)
..
T Consensus 73 ~~ 74 (90)
T PF11608_consen 73 FS 74 (90)
T ss_dssp SS
T ss_pred Ec
Confidence 54
No 134
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.95 E-value=3.4e-05 Score=60.38 Aligned_cols=92 Identities=29% Similarity=0.298 Sum_probs=76.8
Q ss_pred HHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCccCHHHHHHHhhccCCe
Q 025583 30 DAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDV 109 (250)
Q Consensus 30 ~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v 109 (250)
-|+.|..+|++....|+.|.|.|+.. ..|+|.||...++.+.|.+.|..||+|
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~---------------------------a~l~V~nl~~~~sndll~~~f~~fg~~ 58 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH---------------------------AELYVVNLMQGASNDLLEQAFRRFGPI 58 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc---------------------------ceEEEEecchhhhhHHHHHhhhhcCcc
Confidence 47778888999999999999999843 389999999999999999999999998
Q ss_pred eEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCc
Q 025583 110 CFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNA 148 (250)
Q Consensus 110 ~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~ 148 (250)
....+..+..+. .++|+|...-.|.+|+..+...-|.+.
T Consensus 59 e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~ 100 (275)
T KOG0115|consen 59 ERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGT 100 (275)
T ss_pred chheeeecccccccccchhhhhcchhHHHHHHHhccCccccC
Confidence 776666554433 799999999999999988866555553
No 135
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.88 E-value=0.0002 Score=48.50 Aligned_cols=66 Identities=15% Similarity=0.169 Sum_probs=54.9
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcc--CCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCc
Q 025583 83 YRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNA 148 (250)
Q Consensus 83 ~~l~v~~lp~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~ 148 (250)
++|-|.|||...+.++|.+++... |...++.++.|.... ||||.|.+++.|..-.+.++|..+..-
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~ 73 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNF 73 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccC
Confidence 589999999999999999998763 456666666664432 999999999999999999999988753
No 136
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.88 E-value=2e-05 Score=68.13 Aligned_cols=57 Identities=21% Similarity=0.337 Sum_probs=50.7
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
+|||+|+-.+|+. +...+.|+||.+.+.++|.+||..|+.+.|-|+.|.|+-+++.+
T Consensus 427 SKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKNEp 486 (940)
T KOG4661|consen 427 SKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKNEP 486 (940)
T ss_pred HHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecccCc
Confidence 5899999999864 44567899999999999999999999999999999999987543
No 137
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.88 E-value=2.9e-05 Score=61.45 Aligned_cols=69 Identities=20% Similarity=0.235 Sum_probs=61.1
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCc
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNA 148 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~ 148 (250)
..+...+||+|+.+.++.++|+.+|+.||.+..+.+..+...+ ||||+|.+.+.++.|+. |++..|.|.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~ 170 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGP 170 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccc
Confidence 4556689999999999999999999999999888877665443 99999999999999999 999999995
No 138
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.86 E-value=1.9e-05 Score=64.97 Aligned_cols=66 Identities=15% Similarity=0.288 Sum_probs=55.6
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccC
Q 025583 81 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRN 147 (250)
Q Consensus 81 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g 147 (250)
...+|||++|+..++++.|++.|.+||+|..+.++.++... |+||+|++++....++. ..-..|+|
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dg 74 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDG 74 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCC
Confidence 44689999999999999999999999999999999887654 99999999988888865 23344555
No 139
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.85 E-value=1.1e-06 Score=73.05 Aligned_cols=109 Identities=24% Similarity=0.394 Sum_probs=89.0
Q ss_pred CcEEEEEECChHHHHHHHHhhCC-CccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCccCH
Q 025583 18 PGYAFLEFEDYRDAEDAIRGRDG-YNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASW 96 (250)
Q Consensus 18 ~g~aFV~f~~~e~A~~A~~~l~g-~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~ 96 (250)
.|||||.+.++..|.+|++.++| ..+.|..+.|++.-.+.. ....+.|.|+|....|
T Consensus 37 ~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq----------------------rsrk~Qirnippql~w 94 (584)
T KOG2193|consen 37 SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ----------------------RSRKIQIRNIPPQLQW 94 (584)
T ss_pred cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH----------------------HhhhhhHhcCCHHHHH
Confidence 58999999999999999999999 567899999998765432 1235889999999999
Q ss_pred HHHHHHhhccCCeeEEEEEe-cCCCcEEEEEecCHHHHHHHHHHccCCcccCc
Q 025583 97 QDLKDHMRRAGDVCFSQVFR-DRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 148 (250)
Q Consensus 97 ~~l~~~f~~~g~v~~~~~~~-~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~ 148 (250)
+-|..++..||.+..+.... +...-..-|+|...+.+..||.+|+|..+...
T Consensus 95 evld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~ 147 (584)
T KOG2193|consen 95 EVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQ 147 (584)
T ss_pred HHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhh
Confidence 99999999999987776542 22221344678889999999999999999874
No 140
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=97.85 E-value=3.3e-05 Score=69.04 Aligned_cols=53 Identities=26% Similarity=0.406 Sum_probs=48.5
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
.||+|.+|.|. .++|+|||.+....+|.+|+.+|++..+.++.|+|.|+.++.
T Consensus 444 efGeiqSi~li---~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 444 EFGEIQSIILI---PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred hcccceeEeec---cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 49999999997 348999999999999999999999999999999999987653
No 141
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.84 E-value=3e-05 Score=63.17 Aligned_cols=52 Identities=27% Similarity=0.452 Sum_probs=44.2
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHh-hCCCccCCeEEEEEEccC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRG-RDGYNFDGYRLRVELAHG 55 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~-l~g~~~~gr~i~V~~~~~ 55 (250)
+|||+|..|.+... +++|||+|.+.+.|+.|..+ +|...|+|..|.|.|..+
T Consensus 250 yqyGeirsi~~~~~---~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 250 YQYGEIRSIRILPR---KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred hhcCCeeeEEeecc---cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 58999999999643 67999999999999997754 455788999999998876
No 142
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.83 E-value=2.1e-05 Score=67.85 Aligned_cols=54 Identities=30% Similarity=0.480 Sum_probs=47.0
Q ss_pred CCcccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccC-CeEEEEEEcc
Q 025583 1 MMYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRLRVELAH 54 (250)
Q Consensus 1 ~kfG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~-gr~i~V~~~~ 54 (250)
+|+|+|+.+.++. .|..+||.|++|++..+|+.|++.|||..|+ ++.+.|...+
T Consensus 86 sk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~~f~ 142 (698)
T KOG2314|consen 86 SKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVRLFK 142 (698)
T ss_pred HhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEeehhh
Confidence 4799999999985 5669999999999999999999999999887 6677776654
No 143
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.82 E-value=7.8e-05 Score=66.00 Aligned_cols=139 Identities=13% Similarity=0.067 Sum_probs=90.6
Q ss_pred CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCC--CC------------CCCCCCCCC-----CCCC
Q 025583 14 PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH--SS------------SMDRYSSYS-----SGGS 74 (250)
Q Consensus 14 ~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~--~~------------~~~~~~~~~-----~~~~ 74 (250)
.+...|-++|+|..+.++++|+ +-|.+.+-.+.|.|..+-...-. +. .+....... .+..
T Consensus 348 ~~~~tG~~~v~f~~~~~~q~A~-~rn~~~~~~R~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~ 426 (944)
T KOG4307|consen 348 APPQTGRKTVMFTPQAPFQNAF-TRNPSDDVNRPFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQN 426 (944)
T ss_pred CCCcCCceEEEecCcchHHHHH-hcCchhhhhcceeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCC
Confidence 3444799999999999999999 45777777888888665321100 00 000000000 0001
Q ss_pred CCCCCCCCceEEEeCCCCccCHHHHHHHhhccCCeeE-EEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCcce
Q 025583 75 RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFS 150 (250)
Q Consensus 75 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~~~ 150 (250)
..-+......|||..||..++..++.++|.....|.. |.+..-+.+. .|||.|..++++..|+. ..-+.+.|+
T Consensus 427 vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~-~~~k~y~G~-- 503 (944)
T KOG4307|consen 427 VPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASS-VKTKFYPGH-- 503 (944)
T ss_pred CCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhh-cccccccCc--
Confidence 1123345679999999999999999999998766654 6665444433 89999999888888865 344455564
Q ss_pred eeEEEEE
Q 025583 151 RSYVRVR 157 (250)
Q Consensus 151 ~~~i~v~ 157 (250)
+.|.|.
T Consensus 504 -r~irv~ 509 (944)
T KOG4307|consen 504 -RIIRVD 509 (944)
T ss_pred -eEEEee
Confidence 777775
No 144
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.77 E-value=6e-05 Score=48.84 Aligned_cols=46 Identities=24% Similarity=0.398 Sum_probs=32.2
Q ss_pred ccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCC
Q 025583 4 GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 56 (250)
Q Consensus 4 G~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~ 56 (250)
|+|+.|. .+.|+|-|.+++.|+.|++.|+|..+.|+.|.|.+....
T Consensus 32 GkVl~v~-------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 32 GKVLSVS-------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp --EEE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred CEEEEEe-------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 4666653 689999999999999999999999999999999997543
No 145
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.73 E-value=4.6e-05 Score=60.31 Aligned_cols=53 Identities=28% Similarity=0.516 Sum_probs=46.5
Q ss_pred cccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCC
Q 025583 3 YGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 56 (250)
Q Consensus 3 fG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~ 56 (250)
||.|.-|.|+. .++++|||||+|.+.+.+++|+. |||..|.|..|.|.+..-.
T Consensus 125 Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r~~ 180 (231)
T KOG4209|consen 125 CGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKRTN 180 (231)
T ss_pred cCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeeeee
Confidence 78888777754 66799999999999999999996 9999999999999987543
No 146
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.63 E-value=0.00019 Score=43.09 Aligned_cols=52 Identities=19% Similarity=0.306 Sum_probs=41.7
Q ss_pred ceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHH
Q 025583 83 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAI 137 (250)
Q Consensus 83 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~ 137 (250)
+.|-|.+.+.... +.|..+|..||+|..+.+....+ ..+|.|.+..+|+.|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~~--~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPESTN--WMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCCc--EEEEEECCHHHHHhhC
Confidence 3677888887765 55666899999999988873333 8999999999999985
No 147
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.54 E-value=5.6e-05 Score=59.12 Aligned_cols=41 Identities=22% Similarity=0.393 Sum_probs=37.6
Q ss_pred cCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEc
Q 025583 13 IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 53 (250)
Q Consensus 13 ~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~ 53 (250)
.|++++||+||.|.+++++..|+.+|||..++.++|.+.-.
T Consensus 227 RTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 227 RTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 48999999999999999999999999999999999887543
No 148
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.43 E-value=0.00039 Score=54.61 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=40.0
Q ss_pred HHHHHHhh-ccCCeeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCc
Q 025583 97 QDLKDHMR-RAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNA 148 (250)
Q Consensus 97 ~~l~~~f~-~~g~v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~ 148 (250)
++|...|. +||+|..+.|-.+.... -++|.|..+++|++|++.||+..+.|+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~ 138 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGR 138 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCC
Confidence 34444445 78998887665543221 589999999999999999999999995
No 149
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.35 E-value=0.00037 Score=55.68 Aligned_cols=53 Identities=23% Similarity=0.336 Sum_probs=43.7
Q ss_pred CcccEEEEEEec-CCC---CCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEcc
Q 025583 2 MYGPIVDIDLKI-PPR---PPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 54 (250)
Q Consensus 2 kfG~I~~v~i~~-~~~---~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~ 54 (250)
|||+|..|.|.. .+. -.---||+|+..++|.+|+-.|||..|+|+.+...|-.
T Consensus 309 Kyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 309 KYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred hhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 799999999954 211 23357999999999999999999999999998877753
No 150
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.20 E-value=0.00077 Score=54.95 Aligned_cols=53 Identities=25% Similarity=0.374 Sum_probs=43.5
Q ss_pred CcccEEEEEEec-C---CCCCcEE--EEEECChHHHHHHHHhhCCCccCCeEEEEEEcc
Q 025583 2 MYGPIVDIDLKI-P---PRPPGYA--FLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 54 (250)
Q Consensus 2 kfG~I~~v~i~~-~---~~~~g~a--FV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~ 54 (250)
|||+|..|.|.. + ....+.+ ||.|...|+|..||.+.+|..++|+.|+..+..
T Consensus 143 QyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkatYGT 201 (480)
T COG5175 143 QYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKATYGT 201 (480)
T ss_pred hccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEeeecCc
Confidence 799999999943 2 1112334 999999999999999999999999999997753
No 151
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.18 E-value=0.0005 Score=61.24 Aligned_cols=56 Identities=20% Similarity=0.400 Sum_probs=48.6
Q ss_pred CcccEEEEEEec------CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 2 MYGPIVDIDLKI------PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 2 kfG~I~~v~i~~------~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
.||+|..|+|++ ......+|||.|-+..||+.|++.|+|..|.+..+++.|.+...
T Consensus 197 rfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWgk~V~ 258 (877)
T KOG0151|consen 197 RFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWGKAVP 258 (877)
T ss_pred ccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccccccc
Confidence 479999999965 23467899999999999999999999999999999999986443
No 152
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.14 E-value=0.0011 Score=52.63 Aligned_cols=55 Identities=24% Similarity=0.441 Sum_probs=47.7
Q ss_pred CcccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCC
Q 025583 2 MYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 56 (250)
Q Consensus 2 kfG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~ 56 (250)
+||.+..+-|.. .|.+.|.|-|.|...+||+.||+.+||..|+|.+|.+......
T Consensus 106 ~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 106 EFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred HhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 467777777744 8889999999999999999999999999999999999887544
No 153
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.12 E-value=0.0041 Score=42.46 Aligned_cols=65 Identities=22% Similarity=0.217 Sum_probs=46.3
Q ss_pred CceEEEeCCCCccCHHHHHHHhhccCCeeEEE-E----------EecCCCcEEEEEecCHHHHHHHHHHccCCcccCc
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQ-V----------FRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 148 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~-~----------~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~ 148 (250)
...|.|-+.|... ...|.++|.+||.|+... + .....++...|.|+++.+|.+||. .||..+.|.
T Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~ 81 (100)
T PF05172_consen 6 ETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS 81 (100)
T ss_dssp CCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTC
T ss_pred CeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc
Confidence 4468888999884 567889999999987664 0 111223389999999999999997 799999884
No 154
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.07 E-value=0.00075 Score=56.73 Aligned_cols=64 Identities=14% Similarity=0.262 Sum_probs=54.1
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEec---CC--------------CcEEEEEecCHHHHHHHHHHccC
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD---RG--------------GMTGIVDYTSYDDMKYAIRKLDR 142 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~---~~--------------~~~a~v~f~~~~~a~~a~~~l~g 142 (250)
.+..+|.+.|||.+-..+.|.++|..+|.|..|.|... +. ..+|+|+|++.+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 45678999999999999999999999999999998765 11 01899999999999999998754
Q ss_pred C
Q 025583 143 S 143 (250)
Q Consensus 143 ~ 143 (250)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 3
No 155
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.07 E-value=0.00064 Score=58.27 Aligned_cols=54 Identities=26% Similarity=0.517 Sum_probs=45.0
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 55 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~ 55 (250)
++||+|+...|.. .+....||||+|++.+.++.||.+ +-..|+++.|.|+--..
T Consensus 310 k~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 310 KQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred hhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 4799999998854 244449999999999999999954 68999999999987654
No 156
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.07 E-value=0.00062 Score=55.98 Aligned_cols=75 Identities=20% Similarity=0.291 Sum_probs=59.4
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeE--------EEEEecCCC----cEEEEEecCHHHHHHHHHHccCCccc
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFR 146 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~ 146 (250)
.....+|||.+||..++..+|.++|.+++.|.. |.|..+..+ .-|.|.|+++..|+.|+.-++++.|+
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 455678999999999999999999999986642 223333222 18999999999999999999999999
Q ss_pred CcceeeEEEEE
Q 025583 147 NAFSRSYVRVR 157 (250)
Q Consensus 147 g~~~~~~i~v~ 157 (250)
+ ..|.|.
T Consensus 143 g----n~ikvs 149 (351)
T KOG1995|consen 143 G----NTIKVS 149 (351)
T ss_pred C----CCchhh
Confidence 9 455553
No 157
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.06 E-value=0.00019 Score=62.06 Aligned_cols=46 Identities=37% Similarity=0.642 Sum_probs=41.3
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEE
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 49 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~ 49 (250)
.||+|..|.. +....|.+||+|.|..+|+.|+++|++..|.|+.|.
T Consensus 98 ~yGeir~ir~--t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 98 AYGEIREIRE--TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred hhcchhhhhc--ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 5899999554 445689999999999999999999999999999998
No 158
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.01 E-value=0.0034 Score=56.03 Aligned_cols=66 Identities=17% Similarity=0.264 Sum_probs=55.7
Q ss_pred ceEEEeCCCCccCHHHHHHHhhccCCe-eEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCc
Q 025583 83 YRVLVTGLPSSASWQDLKDHMRRAGDV-CFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNA 148 (250)
Q Consensus 83 ~~l~v~~lp~~~~~~~l~~~f~~~g~v-~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~ 148 (250)
+.|.+.|+|++++.+||.+||..|..+ ..|.+..+.++. .+.|-|++.++|..|...|++..|..+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr 937 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNR 937 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccce
Confidence 368889999999999999999999754 455555554433 799999999999999999999999984
No 159
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.97 E-value=0.0032 Score=51.49 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=59.0
Q ss_pred CCCCCceEEEeCCCCccCHHHH------HHHhhccCCeeEEEEEecCCC-----c--EEEEEecCHHHHHHHHHHccCCc
Q 025583 78 SRRSDYRVLVTGLPSSASWQDL------KDHMRRAGDVCFSQVFRDRGG-----M--TGIVDYTSYDDMKYAIRKLDRSE 144 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l------~~~f~~~g~v~~~~~~~~~~~-----~--~a~v~f~~~~~a~~a~~~l~g~~ 144 (250)
.......+||-+||+.+..+++ .++|.+||.|..+.+...... . -.+|+|.+.++|..+|..++|..
T Consensus 110 RVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~ 189 (480)
T COG5175 110 RVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL 189 (480)
T ss_pred eeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccc
Confidence 3456678999999998876662 489999999998888654311 1 24899999999999999999999
Q ss_pred ccCcceeeEEEE
Q 025583 145 FRNAFSRSYVRV 156 (250)
Q Consensus 145 ~~g~~~~~~i~v 156 (250)
++| +.|+.
T Consensus 190 ~DG----r~lka 197 (480)
T COG5175 190 LDG----RVLKA 197 (480)
T ss_pred ccC----ceEee
Confidence 999 45554
No 160
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.91 E-value=0.0035 Score=42.52 Aligned_cols=51 Identities=22% Similarity=0.233 Sum_probs=39.3
Q ss_pred ccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccC----CeEEEEEEcc
Q 025583 4 GPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD----GYRLRVELAH 54 (250)
Q Consensus 4 G~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~----gr~i~V~~~~ 54 (250)
|..--+.|+. ++.+.|||||-|.+++.|..-.+.++|..+. .+...|.+|.
T Consensus 28 g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~yAr 85 (97)
T PF04059_consen 28 GKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEISYAR 85 (97)
T ss_pred CcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEehhH
Confidence 3444456654 6778999999999999999999999998876 4455566653
No 161
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.90 E-value=0.0037 Score=45.38 Aligned_cols=47 Identities=26% Similarity=0.456 Sum_probs=40.0
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEcc
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 54 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~ 54 (250)
+||+|+=|++. .+.-+|.|.+-+.|.+|+ .|+|..++|+.|.|.+-.
T Consensus 59 ~~GevvLvRfv-----~~~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKt 105 (146)
T PF08952_consen 59 QYGEVVLVRFV-----GDTMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKT 105 (146)
T ss_dssp CCS-ECEEEEE-----TTCEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE--
T ss_pred hCCceEEEEEe-----CCeEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCC
Confidence 68999888876 467899999999999999 799999999999998853
No 162
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.82 E-value=0.0018 Score=38.73 Aligned_cols=31 Identities=32% Similarity=0.682 Sum_probs=27.2
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHH
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 35 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~ 35 (250)
+||+|+++.+. ....+.||.|.+..+|++||
T Consensus 23 ~fGeI~~~~~~---~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 23 SFGEIVDIYVP---ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred hcCCEEEEEcC---CCCcEEEEEECCHHHHHhhC
Confidence 59999999986 23679999999999999995
No 163
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.79 E-value=0.0041 Score=54.23 Aligned_cols=68 Identities=25% Similarity=0.291 Sum_probs=55.1
Q ss_pred CCceEEEeCCCCccC------HHHHHHHhhccCCeeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCc
Q 025583 81 SDYRVLVTGLPSSAS------WQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNA 148 (250)
Q Consensus 81 ~~~~l~v~~lp~~~~------~~~l~~~f~~~g~v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~ 148 (250)
-...|+|.|+|---. ...|..+|.++|+++.+.+..+..++ |.|++|+++.+|..|++.|||..|+-.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 345788889886322 23456788999999999998776655 999999999999999999999998763
No 164
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.74 E-value=0.001 Score=52.32 Aligned_cols=66 Identities=15% Similarity=0.162 Sum_probs=57.6
Q ss_pred ceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC---------c-------EEEEEecCHHHHHHHHHHccCCccc
Q 025583 83 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---------M-------TGIVDYTSYDDMKYAIRKLDRSEFR 146 (250)
Q Consensus 83 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---------~-------~a~v~f~~~~~a~~a~~~l~g~~~~ 146 (250)
-.||+++||+.+....|+++|..||.|-.|.+...... + .|.|+|..-..|....+.||+..|.
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 37999999999999999999999999988888655332 1 6789999999999999999999999
Q ss_pred Cc
Q 025583 147 NA 148 (250)
Q Consensus 147 g~ 148 (250)
|.
T Consensus 155 gk 156 (278)
T KOG3152|consen 155 GK 156 (278)
T ss_pred CC
Confidence 85
No 165
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.70 E-value=0.0075 Score=48.45 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=45.6
Q ss_pred HHHHHHHhhccCCeeEEEEEecCCCc-----EEEEEecCHHHHHHHHHHccCCcccCcc
Q 025583 96 WQDLKDHMRRAGDVCFSQVFRDRGGM-----TGIVDYTSYDDMKYAIRKLDRSEFRNAF 149 (250)
Q Consensus 96 ~~~l~~~f~~~g~v~~~~~~~~~~~~-----~a~v~f~~~~~a~~a~~~l~g~~~~g~~ 149 (250)
+.++++.+++||.|..|.|+..+.-. -.||+|...+.|.+|+-.|||.-|.|+.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~ 358 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRV 358 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceeccee
Confidence 45677889999999988887665432 6799999999999999999999999953
No 166
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.64 E-value=0.0001 Score=66.75 Aligned_cols=132 Identities=16% Similarity=0.118 Sum_probs=93.2
Q ss_pred CcccEEEEEEecCC---CCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 2 MYGPIVDIDLKIPP---RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVS 78 (250)
Q Consensus 2 kfG~I~~v~i~~~~---~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
.+|.|+.|.++..| +...++++++.....++.|. ...+..+.++.+.|..+........ ....+.
T Consensus 595 ~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat-~pa~~~~a~~~~av~~ad~~~~~~~-----------~kvs~n 662 (881)
T KOG0128|consen 595 GEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESAT-VPAGGALANRSAAVGLADAEEKEEN-----------FKVSPN 662 (881)
T ss_pred cccccccccCccccccccccchhhhhhccccchhhcc-cccccccCCccccCCCCCchhhhhc-----------cCcCch
Confidence 47889999986511 22238999999999999999 6788888999988887765432111 000000
Q ss_pred -CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEE--ec--CCCcEEEEEecCHHHHHHHHHHccCCcc
Q 025583 79 -RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVF--RD--RGGMTGIVDYTSYDDMKYAIRKLDRSEF 145 (250)
Q Consensus 79 -~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~--~~--~~~~~a~v~f~~~~~a~~a~~~l~g~~~ 145 (250)
...-.++||.||+..+...+|...|..+|.+..+.+. .+ .-.++|+++|..++++.+|+.......+
T Consensus 663 ~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~ 734 (881)
T KOG0128|consen 663 EIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF 734 (881)
T ss_pred HHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh
Confidence 1223578999999999999999999999876655543 22 1122899999999999999875444433
No 167
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.55 E-value=0.014 Score=51.02 Aligned_cols=59 Identities=14% Similarity=0.198 Sum_probs=48.4
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhc--cCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHcc
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRR--AGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 141 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~--~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~ 141 (250)
...++|.+.-||..+..++|+-+|.- +-.++.+++..+.+ .||+|++..||+.|.+.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n---WyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN---WYITFESDTDAQQAYKYLR 233 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc---eEEEeecchhHHHHHHHHH
Confidence 34457888999999999999999984 45678888877764 7899999999999986553
No 168
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.50 E-value=0.0098 Score=40.62 Aligned_cols=52 Identities=17% Similarity=0.332 Sum_probs=37.4
Q ss_pred CCcccEEEEEEec----------CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEE-EEEEc
Q 025583 1 MMYGPIVDIDLKI----------PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRL-RVELA 53 (250)
Q Consensus 1 ~kfG~I~~v~i~~----------~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i-~V~~~ 53 (250)
++||+|++..-.. .......-.|.|.++.+|.+|| ..||..|.|..+ -|.++
T Consensus 27 ~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~mvGV~~~ 89 (100)
T PF05172_consen 27 SSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSLMVGVKPC 89 (100)
T ss_dssp HCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCEEEEEEE-
T ss_pred HhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcEEEEEEEc
Confidence 3799999886100 0123678999999999999999 679999998654 46665
No 169
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.42 E-value=0.03 Score=34.51 Aligned_cols=54 Identities=17% Similarity=0.113 Sum_probs=42.5
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcc---CCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHc
Q 025583 83 YRVLVTGLPSSASWQDLKDHMRRA---GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 140 (250)
Q Consensus 83 ~~l~v~~lp~~~~~~~l~~~f~~~---g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l 140 (250)
..|+|.|+.. .+.++|+.+|..| .....++-+.+. -+-|.|.+.+.|..||.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 4789999864 7779999999998 134556666555 4889999999999999765
No 170
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.08 E-value=0.011 Score=40.85 Aligned_cols=50 Identities=14% Similarity=0.287 Sum_probs=29.0
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCC-----ccCCeEEEEEEc
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY-----NFDGYRLRVELA 53 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~-----~~~gr~i~V~~~ 53 (250)
.+||+|..|.+... ...|||-|.+++.|+.|+.++.-. .|.+..+.+...
T Consensus 23 ~~~g~V~yVD~~~G---~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vL 77 (105)
T PF08777_consen 23 SQFGEVAYVDFSRG---DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVL 77 (105)
T ss_dssp -SS--EEEEE--TT----SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE--
T ss_pred HhcCCcceEEecCC---CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEEC
Confidence 36999999998642 458999999999999999877644 455555555543
No 171
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.01 E-value=0.023 Score=36.58 Aligned_cols=43 Identities=30% Similarity=0.473 Sum_probs=27.4
Q ss_pred cEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEc
Q 025583 5 PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 53 (250)
Q Consensus 5 ~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~ 53 (250)
.|-.|.|. ..|+||+-... .|+.++..|++..+.|++|.|+.|
T Consensus 32 ~IG~I~I~-----~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 32 DIGRIDIF-----DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GEEEEEE------SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred hEEEEEEe-----eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 57778886 56999999654 899999999999999999999875
No 172
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.98 E-value=0.041 Score=40.04 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=43.1
Q ss_pred HHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEe
Q 025583 97 QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 158 (250)
Q Consensus 97 ~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 158 (250)
.+|.+.|..||+++.+++..+ .-.|+|.+-..|.+|+. |+|.++.| ..+.+..
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaals-~dg~~v~g----~~l~i~L 103 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAALS-LDGIQVNG----RTLKIRL 103 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHHH-GCCSEETT----EEEEEEE
T ss_pred HHHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHHc-cCCcEECC----EEEEEEe
Confidence 478888999999999988765 47899999999999987 99999999 4555543
No 173
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=95.86 E-value=0.018 Score=38.26 Aligned_cols=73 Identities=22% Similarity=0.345 Sum_probs=44.7
Q ss_pred EEEEECChHHHHHHHHhhCC-CccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCccCHHHH
Q 025583 21 AFLEFEDYRDAEDAIRGRDG-YNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDL 99 (250)
Q Consensus 21 aFV~f~~~e~A~~A~~~l~g-~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l 99 (250)
|+|.|.+++-|+..+..-.. ..+++..+.|.............. --......+|.|.|||....++.|
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~q-----------v~~~vs~rtVlvsgip~~l~ee~l 69 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQ-----------VFSGVSKRTVLVSGIPDVLDEEEL 69 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEE-----------EEEcccCCEEEEeCCCCCCChhhh
Confidence 78999999999998843222 345566665544321111000000 001244568999999999999988
Q ss_pred HHHhh
Q 025583 100 KDHMR 104 (250)
Q Consensus 100 ~~~f~ 104 (250)
++.+.
T Consensus 70 ~D~Le 74 (88)
T PF07292_consen 70 RDKLE 74 (88)
T ss_pred eeeEE
Confidence 87654
No 174
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.80 E-value=0.15 Score=35.55 Aligned_cols=66 Identities=9% Similarity=0.020 Sum_probs=50.0
Q ss_pred eEEEeCCCCccCHHHHHHHhhccC-CeeEEEEEecCCCc--EEEEEecCHHHHHHHHHHccCCcccCcc
Q 025583 84 RVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGGM--TGIVDYTSYDDMKYAIRKLDRSEFRNAF 149 (250)
Q Consensus 84 ~l~v~~lp~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~--~a~v~f~~~~~a~~a~~~l~g~~~~g~~ 149 (250)
.+.+..+|..++..+|..+...+- .|..+.|..+...+ .+.++|.+.++|..-.+.+||+.++.-+
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslE 83 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLE 83 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCCC
Confidence 444455666667777776666655 46677888776654 8899999999999999999999887654
No 175
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.52 E-value=0.076 Score=34.64 Aligned_cols=54 Identities=17% Similarity=0.235 Sum_probs=40.8
Q ss_pred eEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccC
Q 025583 84 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR 142 (250)
Q Consensus 84 ~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g 142 (250)
..+|. .|......||.++|..||.|.-..|... -|||...+.+.|..|+..+.-
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~dT----SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIYVSWINDT----SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEEEEEECTT----EEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEEEEEEcCC----cEEEEeecHHHHHHHHHHhcc
Confidence 44444 9999999999999999999876666433 699999999999999887753
No 176
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.23 E-value=0.09 Score=40.03 Aligned_cols=71 Identities=11% Similarity=0.189 Sum_probs=47.4
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhc-cCCe---eEEEEEecCC--Cc----EEEEEecCHHHHHHHHHHccCCcccCcce
Q 025583 81 SDYRVLVTGLPSSASWQDLKDHMRR-AGDV---CFSQVFRDRG--GM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFS 150 (250)
Q Consensus 81 ~~~~l~v~~lp~~~~~~~l~~~f~~-~g~v---~~~~~~~~~~--~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~ 150 (250)
....|.|.+||+..+++++.+.+.. ++.. .++....... .. -|+|.|.+.+++..-+..++|..|.+..+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3458999999999999999887776 6654 3443222211 11 89999999999999999999988866553
Q ss_pred e
Q 025583 151 R 151 (250)
Q Consensus 151 ~ 151 (250)
.
T Consensus 86 ~ 86 (176)
T PF03467_consen 86 N 86 (176)
T ss_dssp -
T ss_pred C
Confidence 3
No 177
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.21 E-value=0.011 Score=48.84 Aligned_cols=45 Identities=31% Similarity=0.366 Sum_probs=41.1
Q ss_pred cCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 13 IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 13 ~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
+|+.+||-|.|.|+++..|+.|+..++++.|.|..|+|.++....
T Consensus 111 eT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 111 ETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLAERRT 155 (351)
T ss_pred cccCcCCceeeeecChhhhhhhhhhhccccccCCCchhhhhhhcc
Confidence 488999999999999999999999999999999999998886543
No 178
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=94.59 E-value=0.016 Score=47.66 Aligned_cols=55 Identities=20% Similarity=0.321 Sum_probs=47.8
Q ss_pred CcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 2 MYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
.+|.|+.|.++. ++.++|||||+|.+...+..|+.. +...+.++++.|+.....+
T Consensus 208 ~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 208 SSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred CcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCc
Confidence 478999999965 889999999999999999999966 8889999999998876543
No 179
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.51 E-value=0.026 Score=49.71 Aligned_cols=65 Identities=15% Similarity=0.185 Sum_probs=52.7
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhc-cCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCccc
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRR-AGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 146 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~-~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~ 146 (250)
...+.|+|.||-.-.|.-+|+.++.. .|.|...+|..-.. .|||.|.+.++|...+..|||-.|-
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKS--hCyV~yss~eEA~atr~AlhnV~WP 507 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKS--HCYVSYSSVEEAAATREALHNVQWP 507 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhc--ceeEecccHHHHHHHHHHHhccccC
Confidence 44578999999999999999999995 55565554433333 6999999999999999999998774
No 180
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.44 E-value=0.2 Score=42.92 Aligned_cols=68 Identities=10% Similarity=0.116 Sum_probs=59.8
Q ss_pred CceEEEeCCCCccCHHHHHHHhhccC-CeeEEEEEecCCCc--EEEEEecCHHHHHHHHHHccCCcccCcc
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGGM--TGIVDYTSYDDMKYAIRKLDRSEFRNAF 149 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~--~a~v~f~~~~~a~~a~~~l~g~~~~g~~ 149 (250)
...|.|-.+|..++.-||..|+..+- .|..+.++++.... .+.|.|.+.++|..-.+.+||..|..-+
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le 144 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLE 144 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCCCC
Confidence 67899999999999999999998765 57888888876665 8899999999999999999999987653
No 181
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.15 E-value=0.34 Score=39.46 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=56.5
Q ss_pred CceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEeccc
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 161 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~ 161 (250)
+.-|-|-++|.... .-|..+|.+||+|+..... .++++-+|.|.+..+|++||. .||..|+|. ..|-|..+-+
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALs-kng~ii~g~---vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALS-KNGTIIDGD---VMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhh-hcCeeeccc---eEEeeeecCC
Confidence 45577778887644 5677899999999766555 444589999999999999998 789999984 7777776443
No 182
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=93.83 E-value=0.15 Score=44.42 Aligned_cols=59 Identities=12% Similarity=0.093 Sum_probs=42.9
Q ss_pred CceEEEeCCCCccCHHHHHHHhhccCCeeEEEEE-ec-----CCCc---EEEEEecCHHHHHHHHHHc
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVF-RD-----RGGM---TGIVDYTSYDDMKYAIRKL 140 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~-~~-----~~~~---~a~v~f~~~~~a~~a~~~l 140 (250)
..+|||++||.+++++.|...|..||.+.--.=. .+ +..+ |+|+.|+++.....-+...
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 4589999999999999999999999976422110 00 1112 9999999988877655443
No 183
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.76 E-value=0.056 Score=46.42 Aligned_cols=74 Identities=14% Similarity=0.158 Sum_probs=57.7
Q ss_pred CCceEEEeCCCCcc-CHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEec
Q 025583 81 SDYRVLVTGLPSSA-SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 159 (250)
Q Consensus 81 ~~~~l~v~~lp~~~-~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~ 159 (250)
....|.+.-.|... +..+|..+|.+||.|..+.+..... -|.|+|.+..+|..|. +.++..|++ +.|+|...
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~--~a~vTF~t~aeag~a~-~s~~avlnn----r~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL--HAVVTFKTRAEAGEAY-ASHGAVLNN----RFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh--hheeeeeccccccchh-ccccceecC----ceeEEEEe
Confidence 33455566566654 6789999999999999998877644 6999999999997774 478999999 68888766
Q ss_pred cc
Q 025583 160 DS 161 (250)
Q Consensus 160 ~~ 161 (250)
..
T Consensus 444 np 445 (526)
T KOG2135|consen 444 NP 445 (526)
T ss_pred cC
Confidence 54
No 184
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=93.62 E-value=0.14 Score=42.08 Aligned_cols=16 Identities=19% Similarity=0.169 Sum_probs=7.3
Q ss_pred EEEEEECChHHHHHHH
Q 025583 20 YAFLEFEDYRDAEDAI 35 (250)
Q Consensus 20 ~aFV~f~~~e~A~~A~ 35 (250)
-.||-|.-+--|..++
T Consensus 175 ~v~vry~pe~iACaci 190 (367)
T KOG0835|consen 175 DVFVRYSPESIACACI 190 (367)
T ss_pred ceeeecCHHHHHHHHH
Confidence 3455554444444433
No 185
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=93.41 E-value=0.094 Score=44.51 Aligned_cols=62 Identities=19% Similarity=0.197 Sum_probs=47.2
Q ss_pred eEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCC-cccC
Q 025583 84 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRS-EFRN 147 (250)
Q Consensus 84 ~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~-~~~g 147 (250)
.++++||.+.++..+|+.+|....--..-.+..... |+||...+...|.+|++.++|. ++.|
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~k~g--yafvd~pdq~wa~kaie~~sgk~elqG 65 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSG--YAFVDCPDQQWANKAIETLSGKVELQG 65 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceeeecc--eeeccCCchhhhhhhHHhhchhhhhcC
Confidence 689999999999999999998653211122222222 9999999999999999999886 4555
No 186
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.10 E-value=0.048 Score=46.85 Aligned_cols=51 Identities=16% Similarity=0.252 Sum_probs=44.0
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCC
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 56 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~ 56 (250)
+||+|.+|.|-.. .-.|.|.|.+..+|-.|. ...+..|+++.|+|.|.+..
T Consensus 396 ~fG~i~n~qv~~~---~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 396 QFGEIENIQVDYS---SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hcCccccccccCc---hhhheeeeeccccccchh-ccccceecCceeEEEEecCC
Confidence 7999999998543 467999999999997777 68999999999999998753
No 187
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.00 E-value=0.16 Score=41.20 Aligned_cols=51 Identities=16% Similarity=0.262 Sum_probs=41.0
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeE-EEEEEccC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR-LRVELAHG 55 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~-i~V~~~~~ 55 (250)
.+||+|+++... .+..+-+|-|...-+|++|| ..||+.|+|.. |-|..|..
T Consensus 218 ~~cG~Vvkhv~~---~ngNwMhirYssr~~A~KAL-skng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 218 SRCGEVVKHVTP---SNGNWMHIRYSSRTHAQKAL-SKNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred HhhCeeeeeecC---CCCceEEEEecchhHHHHhh-hhcCeeeccceEEeeeecCC
Confidence 379999998765 34679999999999999999 67999999875 45666543
No 188
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.95 E-value=0.049 Score=44.84 Aligned_cols=53 Identities=28% Similarity=0.453 Sum_probs=42.8
Q ss_pred CcccEEEEEEecCC------CCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEcc
Q 025583 2 MYGPIVDIDLKIPP------RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 54 (250)
Q Consensus 2 kfG~I~~v~i~~~~------~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~ 54 (250)
|||.|..|.+..+. ....-++|.|+..|+|..||...+|+.++|+.|+..+..
T Consensus 103 qygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~gt 161 (327)
T KOG2068|consen 103 QYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKASLGT 161 (327)
T ss_pred ccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHhhCC
Confidence 79999999984411 222348999999999999999999999999997776654
No 189
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=92.91 E-value=0.16 Score=41.74 Aligned_cols=10 Identities=0% Similarity=0.192 Sum_probs=4.5
Q ss_pred cCHHHHHHHh
Q 025583 94 ASWQDLKDHM 103 (250)
Q Consensus 94 ~~~~~l~~~f 103 (250)
++.++|.+++
T Consensus 213 ~~k~eid~ic 222 (367)
T KOG0835|consen 213 TTKREIDEIC 222 (367)
T ss_pred CcHHHHHHHH
Confidence 4444444444
No 190
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.88 E-value=0.16 Score=31.74 Aligned_cols=30 Identities=33% Similarity=0.654 Sum_probs=26.8
Q ss_pred EEEEECChHHHHHHHHhhCCCccCCeEEEE
Q 025583 21 AFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 50 (250)
Q Consensus 21 aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V 50 (250)
=||.|.+.++|++|....+|..+.+-.|.+
T Consensus 36 fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 36 FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 389999999999999999999988877665
No 191
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=92.40 E-value=0.046 Score=48.28 Aligned_cols=49 Identities=6% Similarity=0.166 Sum_probs=39.3
Q ss_pred cccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccC---CeEEEEEEcc
Q 025583 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD---GYRLRVELAH 54 (250)
Q Consensus 3 fG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~---gr~i~V~~~~ 54 (250)
.|.|++.||- +-+-.|||.|.+.++|.+...+|||..+. ++.|.|.|..
T Consensus 469 gg~Vee~WmD---kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 469 GGNVEEFWMD---KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVR 520 (718)
T ss_pred cCchHHHHHH---HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecc
Confidence 4666666552 23778999999999999999999998774 6788888874
No 192
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=92.40 E-value=0.15 Score=42.27 Aligned_cols=69 Identities=16% Similarity=0.146 Sum_probs=54.9
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCC--eeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCc
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNA 148 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~--v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~ 148 (250)
...+++||+||-..++.+||.+.+...|- +..+.++.+...+ ||.|...+.....+.++.|-.++|.|+
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ 152 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQ 152 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCC
Confidence 44578999999999999999999887773 3444444443322 999999999999999999999999986
No 193
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.24 E-value=0.72 Score=33.42 Aligned_cols=62 Identities=8% Similarity=0.120 Sum_probs=43.6
Q ss_pred CCCceEEEeCCC----CccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCc
Q 025583 80 RSDYRVLVTGLP----SSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 144 (250)
Q Consensus 80 ~~~~~l~v~~lp----~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~ 144 (250)
++-.+|.|.=|. ...+...|...+..||+|..+...... .|.|.|.+...|-.|+.+++...
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq---savVvF~d~~SAC~Av~Af~s~~ 149 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ---SAVVVFKDITSACKAVSAFQSRA 149 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc---eEEEEehhhHHHHHHHHhhcCCC
Confidence 444567776444 333344455666789999988775443 69999999999999999887643
No 194
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.00 E-value=0.033 Score=51.43 Aligned_cols=65 Identities=11% Similarity=0.020 Sum_probs=54.7
Q ss_pred CceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCccc
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFR 146 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~ 146 (250)
..+||++||+..+++.+|+..|..+|.|..|.|.....+. ||||.|.+...+..|.-.+.+..|.
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~ 439 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIG 439 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccc
Confidence 3479999999999999999999999999998887653322 9999999999999888777776553
No 195
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.34 E-value=0.64 Score=35.62 Aligned_cols=51 Identities=27% Similarity=0.326 Sum_probs=35.8
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhC--CCccCCeEEEEEEccC
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD--GYNFDGYRLRVELAHG 55 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~--g~~~~gr~i~V~~~~~ 55 (250)
+|+.+..+.+. ++-+-..|.|.+.++|..|...|+ +..+.|..|.|.++..
T Consensus 18 ~~~~~~~~~~L---~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 18 TYDPPVQFSPL---KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp TT-SS-EEEEE---TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hcCCceEEEEc---CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 46666666554 235678999999999999999999 9999999999999854
No 196
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.08 E-value=0.82 Score=31.84 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=33.0
Q ss_pred cEEEEEEecCCC-CCcEEEEEECChHHHHHHHHhhCCCccCC
Q 025583 5 PIVDIDLKIPPR-PPGYAFLEFEDYRDAEDAIRGRDGYNFDG 45 (250)
Q Consensus 5 ~I~~v~i~~~~~-~~g~aFV~f~~~e~A~~A~~~l~g~~~~g 45 (250)
.|..++|..++. ++-.++|+|.++++|+.-...+||+.|.-
T Consensus 40 ~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 40 DIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred cEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 466677766555 45578999999999999999999998863
No 197
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=90.85 E-value=0.19 Score=45.09 Aligned_cols=67 Identities=15% Similarity=0.033 Sum_probs=57.1
Q ss_pred CCCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCc
Q 025583 77 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 148 (250)
Q Consensus 77 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~ 148 (250)
.+.++..++||+|+...+..+.+..+...+|.|..+.... |||.+|..+..+..|+..++-..++|.
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQ 101 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcc
Confidence 3456667999999999999999999999999876655443 899999999999999998888888774
No 198
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=90.00 E-value=2.8 Score=26.80 Aligned_cols=59 Identities=14% Similarity=0.202 Sum_probs=35.0
Q ss_pred CCCccCHHHHHHHhhccC-----CeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEE
Q 025583 90 LPSSASWQDLKDHMRRAG-----DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 157 (250)
Q Consensus 90 lp~~~~~~~l~~~f~~~g-----~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 157 (250)
--..++..+|..++...+ .|-.+.+..+ |+||+-... .|..++..|++..+.| ..+.|+
T Consensus 9 r~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~----~S~vev~~~-~a~~v~~~l~~~~~~g----k~v~ve 72 (74)
T PF03880_consen 9 RKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN----FSFVEVPEE-VAEKVLEALNGKKIKG----KKVRVE 72 (74)
T ss_dssp GGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-TT--HHHHHHHHTT--SSS--------EE
T ss_pred cccCCCHHHHHHHHHhccCCCHHhEEEEEEeee----EEEEEECHH-HHHHHHHHhcCCCCCC----eeEEEE
Confidence 334577888888887764 3556777665 888887654 7888899999999999 555554
No 199
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=89.54 E-value=1.5 Score=33.61 Aligned_cols=52 Identities=12% Similarity=0.072 Sum_probs=40.2
Q ss_pred CHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHcc--CCcccCc
Q 025583 95 SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD--RSEFRNA 148 (250)
Q Consensus 95 ~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~--g~~~~g~ 148 (250)
....|+++|..++.+........-. -..|.|.+.+.|..|...|+ +..+.|.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFr--Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~ 61 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFR--RIRVVFESPESAQRARQLLHWDGTSFNGK 61 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTT--EEEEE-SSTTHHHHHHHTST--TSEETTE
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCC--EEEEEeCCHHHHHHHHHHhcccccccCCC
Confidence 4578999999999877666655544 58899999999999999999 8999994
No 200
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.09 E-value=0.25 Score=40.84 Aligned_cols=69 Identities=17% Similarity=0.167 Sum_probs=52.5
Q ss_pred CCCceEEEeCCCCccCHHHHH---HHhhccCCeeEEEEEecCC-----Cc--EEEEEecCHHHHHHHHHHccCCcccCc
Q 025583 80 RSDYRVLVTGLPSSASWQDLK---DHMRRAGDVCFSQVFRDRG-----GM--TGIVDYTSYDDMKYAIRKLDRSEFRNA 148 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~---~~f~~~g~v~~~~~~~~~~-----~~--~a~v~f~~~~~a~~a~~~l~g~~~~g~ 148 (250)
.....++|-+|+.....+.+. +.|.+||.|..+.+..+.. +. -++|+|...++|..||...+|..++|+
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~ 153 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGR 153 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhh
Confidence 444567888888776444333 6788889998888877652 11 689999999999999999999888885
No 201
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=87.61 E-value=0.26 Score=45.51 Aligned_cols=55 Identities=20% Similarity=0.158 Sum_probs=45.8
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccC--CeEEEEEEccCCCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD--GYRLRVELAHGGRR 58 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~--gr~i~V~~~~~~~~ 58 (250)
++||.|.+++... .-..|.|+|...+.|..|+++|+|+++- |-+.+|.+++.-+.
T Consensus 320 s~yg~v~s~wtlr---~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~ 376 (1007)
T KOG4574|consen 320 SDYGSVASAWTLR---DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPM 376 (1007)
T ss_pred Hhhcchhhheecc---cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccc
Confidence 4799999999853 2568999999999999999999998764 88899999875443
No 202
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=86.75 E-value=0.86 Score=33.49 Aligned_cols=85 Identities=19% Similarity=0.112 Sum_probs=59.1
Q ss_pred CcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCcc-CH
Q 025583 18 PGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSA-SW 96 (250)
Q Consensus 18 ~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~-~~ 96 (250)
.++..++|.+++++..++ ......++|..|.+....+...... ........-|.|.|||... ++
T Consensus 55 ~~~fl~~F~~~~d~~~vl-~~~p~~~~~~~~~l~~W~~~~~~~~--------------~~~~~~~vWVri~glP~~~~~~ 119 (153)
T PF14111_consen 55 DNLFLFQFESEEDRQRVL-KGGPWNFNGHFLILQRWSPDFNPSE--------------VKFEHIPVWVRIYGLPLHLWSE 119 (153)
T ss_pred CCeEEEEEEeccceeEEE-ecccccccccchhhhhhcccccccc--------------cceeccchhhhhccCCHHHhhh
Confidence 689999999999999999 4566777888777776653222111 0001122246677999884 77
Q ss_pred HHHHHHhhccCCeeEEEEEec
Q 025583 97 QDLKDHMRRAGDVCFSQVFRD 117 (250)
Q Consensus 97 ~~l~~~f~~~g~v~~~~~~~~ 117 (250)
+-|..+...+|.+..++....
T Consensus 120 ~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 120 EILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred HHHHHHHHhcCCeEEEEcCCC
Confidence 888889999999888776543
No 203
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=86.70 E-value=0.33 Score=44.89 Aligned_cols=60 Identities=17% Similarity=0.193 Sum_probs=51.1
Q ss_pred EEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCccc
Q 025583 85 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 146 (250)
Q Consensus 85 l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~ 146 (250)
..+.|.+-..+..-|..+|.+||.|...+...+-+ .|.|+|...+.|-.|++.|+|+++-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs 360 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVS 360 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCccc
Confidence 44556666677778999999999999999987766 8999999999999999999998763
No 204
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=85.78 E-value=0.29 Score=41.71 Aligned_cols=51 Identities=24% Similarity=0.207 Sum_probs=36.4
Q ss_pred CcccEEEEEEecC--------CC--------CCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEE
Q 025583 2 MYGPIVDIDLKIP--------PR--------PPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 52 (250)
Q Consensus 2 kfG~I~~v~i~~~--------~~--------~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~ 52 (250)
.||.|..|.|... +. .+-+|||+|++.+.|.+|.+.||...-+-.-|.|.+
T Consensus 254 ~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e~~wr~glkvkL 320 (484)
T KOG1855|consen 254 TVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPEQNWRMGLKVKL 320 (484)
T ss_pred cccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchhhhhhhcchhhh
Confidence 5899999999331 11 256899999999999999988866544434444443
No 205
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=85.03 E-value=9.2 Score=31.18 Aligned_cols=49 Identities=14% Similarity=0.208 Sum_probs=35.0
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEE-ecCCCcEEEEEecCH
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVF-RDRGGMTGIVDYTSY 130 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~-~~~~~~~a~v~f~~~ 130 (250)
...+.|+++||+.++...||+..+.+.+-+- +.+. ..+-+ .||+.|.+.
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswkg~~~-k~flh~~~~ 377 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWKGHFG-KCFLHFGNR 377 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCc-eeEeeecCCc-ceeEecCCc
Confidence 4456799999999999999999998876432 2222 22222 699999863
No 206
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=84.63 E-value=0.69 Score=38.47 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=39.1
Q ss_pred EEEEEEe---cCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEc
Q 025583 6 IVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 53 (250)
Q Consensus 6 I~~v~i~---~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~ 53 (250)
|.++++. ..|++||||+|........++.|+.|....|-|..-.|..+
T Consensus 109 ~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 109 FADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred HhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 4455553 27899999999999999999999999999999987666544
No 207
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=76.57 E-value=4.2 Score=35.23 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=34.1
Q ss_pred cEEEEEEecCCCCCc-EEEEEECChHHHHHHHHhhCCCccCC
Q 025583 5 PIVDIDLKIPPRPPG-YAFLEFEDYRDAEDAIRGRDGYNFDG 45 (250)
Q Consensus 5 ~I~~v~i~~~~~~~g-~aFV~f~~~e~A~~A~~~l~g~~~~g 45 (250)
.|.+|.|..++.+.. .++|.|.+.++|..-...+||..|.-
T Consensus 101 ~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 101 QISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred hhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 477888877666544 58999999999999999999998863
No 208
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=75.26 E-value=1.6 Score=26.45 Aligned_cols=37 Identities=27% Similarity=0.426 Sum_probs=21.4
Q ss_pred CCcEEEEEECC-hHHHHHHHHhhCCCccCCeEEEEEEcc
Q 025583 17 PPGYAFLEFED-YRDAEDAIRGRDGYNFDGYRLRVELAH 54 (250)
Q Consensus 17 ~~g~aFV~f~~-~e~A~~A~~~l~g~~~~gr~i~V~~~~ 54 (250)
.+|||||...+ .+|.--.-..|++. ++|-.+.|.+..
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A-~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGA-MDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS--TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCC-CCCCEEEEEEec
Confidence 58999999997 44433344556666 355566666654
No 209
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=75.22 E-value=8 Score=25.38 Aligned_cols=36 Identities=31% Similarity=0.376 Sum_probs=25.2
Q ss_pred cEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCc
Q 025583 5 PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYN 42 (250)
Q Consensus 5 ~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~ 42 (250)
.|.+|..+ +..+||-|||=.++.++..|+..+.+..
T Consensus 33 ~I~Si~~~--~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAP--DSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE---TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEe--CCCceEEEEEeCCHHHHHHHHhccccee
Confidence 34555544 4579999999999999999998777653
No 210
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=74.96 E-value=19 Score=23.72 Aligned_cols=52 Identities=15% Similarity=0.081 Sum_probs=37.4
Q ss_pred CCCCccCHHHHHHHhhc-cC-CeeEEEEEecCCCc-EEEEEecCHHHHHHHHHHc
Q 025583 89 GLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGGM-TGIVDYTSYDDMKYAIRKL 140 (250)
Q Consensus 89 ~lp~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~~-~a~v~f~~~~~a~~a~~~l 140 (250)
-....++..+|++.++. || .|..+.....+.+. -|+|.+.....|.....+|
T Consensus 27 ~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 27 IVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 34567788888888887 45 56677665544443 8999999988888776544
No 211
>KOG3263 consensus Nucleic acid binding protein [General function prediction only]
Probab=74.75 E-value=0.64 Score=34.51 Aligned_cols=6 Identities=50% Similarity=0.423 Sum_probs=2.2
Q ss_pred CCCCCC
Q 025583 227 SPSGSP 232 (250)
Q Consensus 227 ~rs~s~ 232 (250)
.++.||
T Consensus 84 ~rs~Sp 89 (196)
T KOG3263|consen 84 RRSVSP 89 (196)
T ss_pred hcccCC
Confidence 333333
No 212
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=73.76 E-value=8.1 Score=24.53 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=26.6
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCc
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYN 42 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~ 42 (250)
.+||.|..+-=. ..|+.+ |-+.++++..+++|....
T Consensus 18 ~kfG~i~Y~Skk-----~kYvvl-Yvn~~~~e~~~~kl~~l~ 53 (71)
T PF09902_consen 18 RKFGDIHYVSKK-----MKYVVL-YVNEEDVEEIIEKLKKLK 53 (71)
T ss_pred hhcccEEEEECC-----ccEEEE-EECHHHHHHHHHHHhcCC
Confidence 378988877632 456644 778999999999888764
No 213
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=72.48 E-value=8.6 Score=28.04 Aligned_cols=38 Identities=16% Similarity=0.137 Sum_probs=31.2
Q ss_pred CCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEcc
Q 025583 16 RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 54 (250)
Q Consensus 16 ~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~ 54 (250)
-.+-.|.|.|.+..+|.+|+.++.. ...|..+.+.+-+
T Consensus 123 cGrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWqq 160 (166)
T PF15023_consen 123 CGRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQQ 160 (166)
T ss_pred cCCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeeccc
Confidence 3467899999999999999998887 4678888887653
No 214
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=72.47 E-value=4.9 Score=24.77 Aligned_cols=20 Identities=20% Similarity=0.144 Sum_probs=17.4
Q ss_pred cEEEEEECChHHHHHHHHhh
Q 025583 19 GYAFLEFEDYRDAEDAIRGR 38 (250)
Q Consensus 19 g~aFV~f~~~e~A~~A~~~l 38 (250)
--|=|.|.+++.|..||.+|
T Consensus 43 tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 43 TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred CcEEEEECCHHHHHHHHHcC
Confidence 36889999999999999765
No 215
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=71.08 E-value=23 Score=22.16 Aligned_cols=50 Identities=18% Similarity=0.249 Sum_probs=39.1
Q ss_pred ccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccC
Q 025583 93 SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 147 (250)
Q Consensus 93 ~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g 147 (250)
.++.++++..+..|+-. .|..+..| =||.|.+..+|+++....++..+-+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~tG--fYIvF~~~~Ea~rC~~~~~~~~~f~ 60 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDRTG--FYIVFNDSKEAERCFRAEDGTLFFT 60 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecCCE--EEEEECChHHHHHHHHhcCCCEEEE
Confidence 46778999999988742 34445543 4799999999999999999988765
No 216
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=70.85 E-value=1.2 Score=35.56 Aligned_cols=47 Identities=17% Similarity=0.167 Sum_probs=37.0
Q ss_pred CCcccEEEEEEec---C--------CCCC----cEEEEEECChHHHHHHHHhhCCCccCCeE
Q 025583 1 MMYGPIVDIDLKI---P--------PRPP----GYAFLEFEDYRDAEDAIRGRDGYNFDGYR 47 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~--------~~~~----g~aFV~f~~~e~A~~A~~~l~g~~~~gr~ 47 (250)
.+||+|-.|.|.. + +.+. --|.|+|.....|..+...|||..|+|+.
T Consensus 96 ~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Iggkk 157 (278)
T KOG3152|consen 96 SQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGGKK 157 (278)
T ss_pred HhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCCCC
Confidence 3699999999942 1 2222 24789999999999999999999999874
No 217
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=70.37 E-value=26 Score=22.62 Aligned_cols=55 Identities=15% Similarity=0.072 Sum_probs=38.1
Q ss_pred EEeCCCCccCHHHHHHHhhc-cC-CeeEEEEEecCCC-cEEEEEecCHHHHHHHHHHc
Q 025583 86 LVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKL 140 (250)
Q Consensus 86 ~v~~lp~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-~~a~v~f~~~~~a~~a~~~l 140 (250)
++-..+..++..+|+..++. |+ .|..+....-+.+ .-|+|.+.....|.....++
T Consensus 17 y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 17 LTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 44455677888899988887 45 5666665544433 28999999888877765544
No 218
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=68.18 E-value=22 Score=23.45 Aligned_cols=35 Identities=14% Similarity=0.144 Sum_probs=27.4
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG 40 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g 40 (250)
+-||.|.=-+|. -..|||...+.+.|..|+..+..
T Consensus 30 spfG~I~VsWi~-----dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 30 SPFGQIYVSWIN-----DTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCCCCEEEEEEC-----TTEEEEEECCCHHHHHHHHHHTT
T ss_pred ccCCcEEEEEEc-----CCcEEEEeecHHHHHHHHHHhcc
Confidence 357888755554 34899999999999999987763
No 219
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=66.93 E-value=2.3 Score=37.72 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=24.3
Q ss_pred EEEEECChHHHHHHHHhhCC--CccCCeEEEEE
Q 025583 21 AFLEFEDYRDAEDAIRGRDG--YNFDGYRLRVE 51 (250)
Q Consensus 21 aFV~f~~~e~A~~A~~~l~g--~~~~gr~i~V~ 51 (250)
=||.|++..||+.|.+.|.. ++|.|++|...
T Consensus 215 WyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 215 WYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 49999999999999977765 56667766543
No 220
>PRK02302 hypothetical protein; Provisional
Probab=65.29 E-value=14 Score=24.54 Aligned_cols=36 Identities=19% Similarity=0.286 Sum_probs=26.4
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCc
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYN 42 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~ 42 (250)
.+||.|..+-=. ..|+. -|-+.++|+..+++|....
T Consensus 24 rkfG~I~Y~Skk-----~kYvv-lYvn~~~~e~~~~kl~~l~ 59 (89)
T PRK02302 24 SKYGDIVYHSKR-----SRYLV-LYVNKEDVEQKLEELSKLK 59 (89)
T ss_pred hhcCcEEEEecc-----ccEEE-EEECHHHHHHHHHHHhcCC
Confidence 378888876532 44654 4778999999999888764
No 221
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=64.75 E-value=14 Score=30.97 Aligned_cols=31 Identities=26% Similarity=0.222 Sum_probs=23.0
Q ss_pred EEEEECChHHHHHHHHhhCCCccCCeEEEEEEc
Q 025583 21 AFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 53 (250)
Q Consensus 21 aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~ 53 (250)
|||.|.++.+|..|++.+.... ...+.|..+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~A 31 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPA 31 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeC
Confidence 7999999999999997555443 344566665
No 222
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=64.32 E-value=21 Score=25.07 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=23.9
Q ss_pred eEEEeCCCCc---------cCHHHHHHHhhccCCeeEEEEEecCCCc--EEEEEecCHH
Q 025583 84 RVLVTGLPSS---------ASWQDLKDHMRRAGDVCFSQVFRDRGGM--TGIVDYTSYD 131 (250)
Q Consensus 84 ~l~v~~lp~~---------~~~~~l~~~f~~~g~v~~~~~~~~~~~~--~a~v~f~~~~ 131 (250)
++.|.|++.. .+.+.|.+.|..|.++... ...+..+. +++|+|...-
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~-~l~~~~gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVK-PLYGKQGHTGFAIVEFNKDW 67 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEE-EEEETTEEEEEEEEE--SSH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeE-ECcCCCCCcEEEEEEECCCh
Confidence 4556666443 3568899999999887644 43444443 8999999743
No 223
>PRK02886 hypothetical protein; Provisional
Probab=63.77 E-value=17 Score=24.08 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=25.9
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCc
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYN 42 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~ 42 (250)
+||.|..+-=. ..|+. -|-+.++|+..+++|....
T Consensus 23 kyG~I~Y~Skr-----~kYvv-lYvn~~~~e~~~~kl~~l~ 57 (87)
T PRK02886 23 KFGNVHYVSKR-----LKYAV-LYCDMEQVEDIMNKLSSLP 57 (87)
T ss_pred hcCcEEEEecc-----ccEEE-EEECHHHHHHHHHHHhcCC
Confidence 68888876532 34554 4778999999999888764
No 224
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=60.29 E-value=13 Score=31.71 Aligned_cols=64 Identities=16% Similarity=0.290 Sum_probs=45.9
Q ss_pred ceEEEeCCCCccCHHHHHHHhhccCC-eeEEEEEecCCCc------EEEEEecCHHHHHHHHHHccCCccc
Q 025583 83 YRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDRGGM------TGIVDYTSYDDMKYAIRKLDRSEFR 146 (250)
Q Consensus 83 ~~l~v~~lp~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~~------~a~v~f~~~~~a~~a~~~l~g~~~~ 146 (250)
..+.|.+||...+..+|.+....+-. +.+..+.....+. .|+|.|..+++...-...++|..|-
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 46788999999999999988888764 4444444221111 7899999999977777777776553
No 225
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.03 E-value=57 Score=28.15 Aligned_cols=55 Identities=11% Similarity=0.068 Sum_probs=42.5
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhccCCee-EEEEEecCCCcEEEEEecCHHHHHHHHH
Q 025583 81 SDYRVLVTGLPSSASWQDLKDHMRRAGDVC-FSQVFRDRGGMTGIVDYTSYDDMKYAIR 138 (250)
Q Consensus 81 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~-~~~~~~~~~~~~a~v~f~~~~~a~~a~~ 138 (250)
-.+.|-|.++|.....+||...|..|+.-- .|..+.+. .||..|.....|..||.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt---halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT---HALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc---eeEEeecchHHHHHHhh
Confidence 345788999999998899999999998532 23333332 59999999999999976
No 226
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=56.60 E-value=12 Score=23.43 Aligned_cols=50 Identities=22% Similarity=0.333 Sum_probs=26.9
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECCh-HHH---HHHHHhhCC--CccCCeEEEEEEccCCC
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDY-RDA---EDAIRGRDG--YNFDGYRLRVELAHGGR 57 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~-e~A---~~A~~~l~g--~~~~gr~i~V~~~~~~~ 57 (250)
..|.|+-... .+||+||.=.+. +++ ..|+. .+| ..-.|..+..+.....+
T Consensus 2 ~~G~Vk~f~~-----~kGfGFI~~~~g~~dvfvH~s~~~-~~g~~~l~~G~~V~f~~~~~~~ 57 (68)
T TIGR02381 2 AIGIVKWFNN-----AKGFGFICPEGVDGDIFAHYSTIQ-MDGYRTLKAGQKVQFEVVQGPK 57 (68)
T ss_pred CCeEEEEEeC-----CCCeEEEecCCCCccEEEEHHHhh-hcCCCCCCCCCEEEEEEEECCC
Confidence 3466655443 389999987652 332 23332 233 23346667766665443
No 227
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=56.33 E-value=19 Score=22.72 Aligned_cols=28 Identities=18% Similarity=0.120 Sum_probs=23.0
Q ss_pred cEEEEEECChHHHHHHHHhhCCCccCCe
Q 025583 19 GYAFLEFEDYRDAEDAIRGRDGYNFDGY 46 (250)
Q Consensus 19 g~aFV~f~~~e~A~~A~~~l~g~~~~gr 46 (250)
.+++|.|.+..+|.+|-+.|....|..+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 4789999999999999988887665444
No 228
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.15 E-value=15 Score=33.01 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=28.8
Q ss_pred cEEEEEECChHHHHHHHHhhCCCccCCe--EEEEEEc
Q 025583 19 GYAFLEFEDYRDAEDAIRGRDGYNFDGY--RLRVELA 53 (250)
Q Consensus 19 g~aFV~f~~~e~A~~A~~~l~g~~~~gr--~i~V~~~ 53 (250)
=||.|+|.+.+.|.+....|+|..|..- .|-+.|.
T Consensus 269 YyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 269 YYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred EEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 3899999999999999999999999854 4444443
No 229
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=55.92 E-value=25 Score=26.00 Aligned_cols=34 Identities=32% Similarity=0.340 Sum_probs=26.7
Q ss_pred EEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCC
Q 025583 6 IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 41 (250)
Q Consensus 6 I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~ 41 (250)
|.+|.++. ..+||.||+....+++..|+..+.+.
T Consensus 36 i~~i~vp~--~fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 36 IYAILAPP--ELKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred EEEEEccC--CCCcEEEEEEEChHHHHHHHhcCCCE
Confidence 66666653 46999999999888899898777653
No 230
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=55.68 E-value=8.2 Score=32.01 Aligned_cols=10 Identities=20% Similarity=0.428 Sum_probs=4.2
Q ss_pred EEECChHHHH
Q 025583 23 LEFEDYRDAE 32 (250)
Q Consensus 23 V~f~~~e~A~ 32 (250)
|.|.++.-|.
T Consensus 26 v~~~D~~VC~ 35 (319)
T KOG0796|consen 26 VKFDDPDVCK 35 (319)
T ss_pred CCCCchhHHH
Confidence 4444444333
No 231
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=54.13 E-value=33 Score=21.08 Aligned_cols=20 Identities=10% Similarity=0.277 Sum_probs=15.4
Q ss_pred HHHHHHHhhccCCeeEEEEE
Q 025583 96 WQDLKDHMRRAGDVCFSQVF 115 (250)
Q Consensus 96 ~~~l~~~f~~~g~v~~~~~~ 115 (250)
.++|+++|...|+|.-+.+.
T Consensus 8 ~~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHHhcCcEEEEEEc
Confidence 36899999999987655543
No 232
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=52.48 E-value=25 Score=26.76 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=34.5
Q ss_pred CCcEEEEEECChHHHHHHHHhhCCCccCCe-EEEEEEccCC
Q 025583 17 PPGYAFLEFEDYRDAEDAIRGRDGYNFDGY-RLRVELAHGG 56 (250)
Q Consensus 17 ~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr-~i~V~~~~~~ 56 (250)
+.++.-|-|.+++.|..|..++++..|.|. .++..+++..
T Consensus 50 sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 50 SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 466778899999999999999999999988 8888887643
No 233
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.55 E-value=1.1e+02 Score=27.85 Aligned_cols=69 Identities=16% Similarity=0.201 Sum_probs=52.3
Q ss_pred CCCceEEEeCCCCc-cCHHHHHHHhhcc----CCeeEEEEEec--------------C------------------CC--
Q 025583 80 RSDYRVLVTGLPSS-ASWQDLKDHMRRA----GDVCFSQVFRD--------------R------------------GG-- 120 (250)
Q Consensus 80 ~~~~~l~v~~lp~~-~~~~~l~~~f~~~----g~v~~~~~~~~--------------~------------------~~-- 120 (250)
....+|.|.||.-. +...+|.-+|..| |.|..|.|.+. + ..
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 34568999999875 6888998888755 35666665321 1 00
Q ss_pred -------------c----EEEEEecCHHHHHHHHHHccCCcccCc
Q 025583 121 -------------M----TGIVDYTSYDDMKYAIRKLDRSEFRNA 148 (250)
Q Consensus 121 -------------~----~a~v~f~~~~~a~~a~~~l~g~~~~g~ 148 (250)
. ||.|+|.+.+.|.+..+.++|.+|...
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 0 999999999999999999999998764
No 234
>PF01782 RimM: RimM N-terminal domain; InterPro: IPR002676 The RimM protein is essential for efficient processing of 16S rRNA []. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes [].; GO: 0006364 rRNA processing; PDB: 2QGG_A 3A1P_C 2DOG_A 2DYI_A 3H9N_A 2F1L_A.
Probab=49.26 E-value=41 Score=21.73 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=17.6
Q ss_pred CcEEEEEECChHHHHHHHHhhCCCc
Q 025583 18 PGYAFLEFEDYRDAEDAIRGRDGYN 42 (250)
Q Consensus 18 ~g~aFV~f~~~e~A~~A~~~l~g~~ 42 (250)
.+..+|.|+..++-+.|. +|.|..
T Consensus 54 ~~~~i~~~~gi~~r~~Ae-~l~g~~ 77 (84)
T PF01782_consen 54 GKSLIVKFEGIDDREAAE-ALRGCE 77 (84)
T ss_dssp TTEEEEEETT--SHHHHH-TTTT-E
T ss_pred CCEEEEEEcCCCCHHHHH-hhCCCE
Confidence 789999999999999998 566653
No 235
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=49.12 E-value=84 Score=23.09 Aligned_cols=55 Identities=15% Similarity=0.124 Sum_probs=36.8
Q ss_pred EEEeCCCCccCHHHHHHHhhc-cC-CeeEEEEEecCCCc-EEEEEecCHHHHHHHHHH
Q 025583 85 VLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGGM-TGIVDYTSYDDMKYAIRK 139 (250)
Q Consensus 85 l~v~~lp~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~~-~a~v~f~~~~~a~~a~~~ 139 (250)
.++--....++..+|++.++. |+ .|..|.....+++. -|||.+....+|......
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVANK 141 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 344455677888899988887 44 56666665555543 899999877765544343
No 236
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=47.48 E-value=21 Score=21.93 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=13.5
Q ss_pred ccEEEEEEecCCCCCcEEEEEECCh
Q 025583 4 GPIVDIDLKIPPRPPGYAFLEFEDY 28 (250)
Q Consensus 4 G~I~~v~i~~~~~~~g~aFV~f~~~ 28 (250)
|.|..... .+||+||.-.+.
T Consensus 3 G~V~~~~~-----~kgyGFI~~~~~ 22 (66)
T PF00313_consen 3 GTVKWFDD-----EKGYGFITSDDG 22 (66)
T ss_dssp EEEEEEET-----TTTEEEEEETTS
T ss_pred EEEEEEEC-----CCCceEEEEccc
Confidence 56654443 389999988654
No 237
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=47.28 E-value=84 Score=21.59 Aligned_cols=41 Identities=17% Similarity=0.399 Sum_probs=26.9
Q ss_pred HHHHHHHhhccCCeeEEEEEecCCCc-EEEEEecCHHHHHHH
Q 025583 96 WQDLKDHMRRAGDVCFSQVFRDRGGM-TGIVDYTSYDDMKYA 136 (250)
Q Consensus 96 ~~~l~~~f~~~g~v~~~~~~~~~~~~-~a~v~f~~~~~a~~a 136 (250)
+.+|..++.++|--.+......+... ||++++.+.+....+
T Consensus 26 WPE~~a~lk~agi~nYSIfLde~~n~lFgy~E~~d~~a~m~~ 67 (105)
T COG3254 26 WPELLALLKEAGIRNYSIFLDEEENLLFGYWEYEDFEADMAK 67 (105)
T ss_pred cHHHHHHHHHcCCceeEEEecCCcccEEEEEEEcChHHHHHH
Confidence 46788888888866665544443333 999999955544443
No 238
>PRK11901 hypothetical protein; Reviewed
Probab=47.15 E-value=1.6e+02 Score=24.87 Aligned_cols=63 Identities=19% Similarity=0.178 Sum_probs=38.2
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCC--eeEEEEEecCCCcEEEE--EecCHHHHHHHHHHccCCc
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFRDRGGMTGIV--DYTSYDDMKYAIRKLDRSE 144 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~--v~~~~~~~~~~~~~a~v--~f~~~~~a~~a~~~l~g~~ 144 (250)
....++|.|..+. .++.|+.|..+.+. +.......+...+|..| .|.+.++|..|+..|-...
T Consensus 242 p~~~YTLQL~Aas---~~~~L~~f~~~~~L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 242 PASHYTLQLSSAS---RSDTLNAYAKKQNLSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CCCCeEEEeecCC---CHHHHHHHHHHcCcCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 3455677776654 46778887777652 22222222222224444 5889999999999886543
No 239
>PRK14998 cold shock-like protein CspD; Provisional
Probab=46.97 E-value=21 Score=22.78 Aligned_cols=11 Identities=27% Similarity=0.564 Sum_probs=8.3
Q ss_pred CCcEEEEEECC
Q 025583 17 PPGYAFLEFED 27 (250)
Q Consensus 17 ~~g~aFV~f~~ 27 (250)
.+||+||.=.+
T Consensus 12 ~kGfGFI~~~~ 22 (73)
T PRK14998 12 AKGFGFICPEG 22 (73)
T ss_pred CCceEEEecCC
Confidence 38999996654
No 240
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=46.23 E-value=22 Score=22.77 Aligned_cols=10 Identities=30% Similarity=0.617 Sum_probs=7.8
Q ss_pred CCcEEEEEEC
Q 025583 17 PPGYAFLEFE 26 (250)
Q Consensus 17 ~~g~aFV~f~ 26 (250)
.+||+||+=.
T Consensus 12 ~KGfGFI~~~ 21 (74)
T PRK09937 12 AKGFGFICPE 21 (74)
T ss_pred CCCeEEEeeC
Confidence 3999999654
No 241
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=46.02 E-value=63 Score=30.08 Aligned_cols=43 Identities=12% Similarity=0.091 Sum_probs=34.9
Q ss_pred EEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEcc
Q 025583 6 IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 54 (250)
Q Consensus 6 I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~ 54 (250)
|-.|.|. ..|.||+... +.|...+..|++..+.|+.|.|+.+.
T Consensus 519 ig~i~i~-----~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 519 IGNIKLF-----ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred CCcEEEe-----CCceEEEcCh-hhHHHHHHHhccccccCCceEEEECC
Confidence 4455555 5699999864 46888999999999999999999875
No 242
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=45.85 E-value=50 Score=21.76 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=18.6
Q ss_pred cEEEEEEecCCCCCcEEEEEECChHHHHHHHH
Q 025583 5 PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 36 (250)
Q Consensus 5 ~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~ 36 (250)
+|.+|...+.....-=|||.+...++|.....
T Consensus 48 kV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 48 KVEKVNTLITPKGEKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred ceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHH
Confidence 55666654433333457777777766666543
No 243
>PRK15464 cold shock-like protein CspH; Provisional
Probab=45.29 E-value=19 Score=22.76 Aligned_cols=39 Identities=18% Similarity=0.188 Sum_probs=20.0
Q ss_pred CCcEEEEEECCh-HHH---HHHHHhhCC--CccCCeEEEEEEccCC
Q 025583 17 PPGYAFLEFEDY-RDA---EDAIRGRDG--YNFDGYRLRVELAHGG 56 (250)
Q Consensus 17 ~~g~aFV~f~~~-e~A---~~A~~~l~g--~~~~gr~i~V~~~~~~ 56 (250)
-+||+||+=.+. +|+ ..||.. +| ....|..|.+++....
T Consensus 15 ~KGfGFI~~~~g~~DvFvH~s~l~~-~g~~~l~~G~~V~f~v~~~~ 59 (70)
T PRK15464 15 KSGKGFIIPSDGRKEVQVHISAFTP-RDAEVLIPGLRVEFCRVNGL 59 (70)
T ss_pred CCCeEEEccCCCCccEEEEehhehh-cCCCCCCCCCEEEEEEEECC
Confidence 399999976542 222 223321 22 2334666666665543
No 244
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=45.16 E-value=18 Score=24.43 Aligned_cols=37 Identities=14% Similarity=0.257 Sum_probs=25.6
Q ss_pred cccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhC
Q 025583 3 YGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRD 39 (250)
Q Consensus 3 fG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~ 39 (250)
||++++..... ...---|..++|.+.+.++.|+.+|-
T Consensus 48 ~Gk~T~F~rAVkA~ddE~VvFsW~~Y~skq~rDA~~~kmM 87 (117)
T COG5507 48 YGKLTDFPRAVKAKDDEEVVFSWIEYPSKQVRDAANAKMM 87 (117)
T ss_pred CCcccchhhhhhccCCcEEEEEEEEcCchhHHHHHHHHhh
Confidence 66666655421 23334699999999999998886653
No 245
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=45.11 E-value=66 Score=19.12 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=40.5
Q ss_pred eEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCH----HHHHHHHHH
Q 025583 84 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSY----DDMKYAIRK 139 (250)
Q Consensus 84 ~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~----~~a~~a~~~ 139 (250)
++.|.|+.-.-....|+..+...-.|..+.+..... .+.|.|... ++...++++
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~--~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETK--TVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTT--EEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCC--EEEEEEecCCCCHHHHHHHHHH
Confidence 467788888878889999999998898888876654 688888754 445555554
No 246
>PRK10905 cell division protein DamX; Validated
Probab=44.44 E-value=1.6e+02 Score=24.71 Aligned_cols=61 Identities=18% Similarity=0.282 Sum_probs=38.8
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc--EEEE--EecCHHHHHHHHHHccCC
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM--TGIV--DYTSYDDMKYAIRKLDRS 143 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~--~a~v--~f~~~~~a~~a~~~l~g~ 143 (250)
...++|.|..+.. .+.|++|..+.|--.+.......+|. |..+ .|.+.++|..|+..|-..
T Consensus 245 a~~YTLQL~A~Ss---~~~l~~fakKlgL~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 245 SSHYTLQLSSSSN---YDNLNGWAKKENLKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred CCceEEEEEecCC---HHHHHHHHHHcCCCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHH
Confidence 4556777776665 56777777776643333333334443 3333 588999999999988554
No 247
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=43.04 E-value=8.4 Score=35.10 Aligned_cols=45 Identities=20% Similarity=0.155 Sum_probs=36.1
Q ss_pred cccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEc
Q 025583 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 53 (250)
Q Consensus 3 fG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~ 53 (250)
+|.|..+... -|||++|..+.-+..|+..|+-..++|..|.+...
T Consensus 64 ~g~v~s~kr~------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 64 SGFVPSWKRD------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCcchhhhhh------hhcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 4555554433 29999999999999999999999999998887663
No 248
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=42.39 E-value=8.3 Score=31.26 Aligned_cols=63 Identities=17% Similarity=0.323 Sum_probs=40.4
Q ss_pred eEEEeCCCC------------ccCHHHHHHHhhccCCeeEEEEEe-cC-----CCc-----------------EEEEEec
Q 025583 84 RVLVTGLPS------------SASWQDLKDHMRRAGDVCFSQVFR-DR-----GGM-----------------TGIVDYT 128 (250)
Q Consensus 84 ~l~v~~lp~------------~~~~~~l~~~f~~~g~v~~~~~~~-~~-----~~~-----------------~a~v~f~ 128 (250)
+|++.+||- -.++..|...|..||.|..|.|+. ++ ++. .|||.|.
T Consensus 151 ti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfm 230 (445)
T KOG2891|consen 151 TIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFM 230 (445)
T ss_pred ceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHH
Confidence 566666663 146778999999999998887752 11 110 2345555
Q ss_pred CHHHHHHHHHHccCCccc
Q 025583 129 SYDDMKYAIRKLDRSEFR 146 (250)
Q Consensus 129 ~~~~a~~a~~~l~g~~~~ 146 (250)
.......|+..|.|..+.
T Consensus 231 eykgfa~amdalr~~k~a 248 (445)
T KOG2891|consen 231 EYKGFAQAMDALRGMKLA 248 (445)
T ss_pred HHHhHHHHHHHHhcchHH
Confidence 566666777777776553
No 249
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=41.86 E-value=19 Score=28.98 Aligned_cols=54 Identities=24% Similarity=0.284 Sum_probs=40.2
Q ss_pred CCcccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCC----CccCCeEEEEEEcc
Q 025583 1 MMYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDG----YNFDGYRLRVELAH 54 (250)
Q Consensus 1 ~kfG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g----~~~~gr~i~V~~~~ 54 (250)
++||+|....++. .++..+-++|+|+..-.|.+|+..++- ....+.+.-|+.+.
T Consensus 53 ~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~e 112 (275)
T KOG0115|consen 53 RRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPME 112 (275)
T ss_pred hhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChhh
Confidence 3689888766643 677889999999999999999988843 23446666666543
No 250
>PRK15463 cold shock-like protein CspF; Provisional
Probab=40.48 E-value=25 Score=22.15 Aligned_cols=40 Identities=20% Similarity=0.166 Sum_probs=19.8
Q ss_pred CCcEEEEEECCh-HHH---HHHHHhh-CCCccCCeEEEEEEccCC
Q 025583 17 PPGYAFLEFEDY-RDA---EDAIRGR-DGYNFDGYRLRVELAHGG 56 (250)
Q Consensus 17 ~~g~aFV~f~~~-e~A---~~A~~~l-~g~~~~gr~i~V~~~~~~ 56 (250)
.+||+||+=.+- +++ ..||... ....-.|..|..++....
T Consensus 15 ~kGfGFI~~~~g~~DvFvH~sal~~~g~~~l~~G~~V~f~v~~~~ 59 (70)
T PRK15463 15 KSGKGLITPSDGRKDVQVHISALNLRDAEELTTGLRVEFCRINGL 59 (70)
T ss_pred CCceEEEecCCCCccEEEEehhhhhcCCCCCCCCCEEEEEEEECC
Confidence 399999976542 221 1333221 112334666666655443
No 251
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=40.14 E-value=25 Score=22.07 Aligned_cols=11 Identities=36% Similarity=0.794 Sum_probs=8.5
Q ss_pred CCcEEEEEECC
Q 025583 17 PPGYAFLEFED 27 (250)
Q Consensus 17 ~~g~aFV~f~~ 27 (250)
.+||+||+=.+
T Consensus 14 ~kGyGFI~~~~ 24 (69)
T PRK09507 14 SKGFGFITPED 24 (69)
T ss_pred CCCcEEEecCC
Confidence 38999997654
No 252
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=40.11 E-value=16 Score=23.15 Aligned_cols=22 Identities=23% Similarity=0.545 Sum_probs=16.1
Q ss_pred ccEEEEEEecCCCCCcEEEEEECChH
Q 025583 4 GPIVDIDLKIPPRPPGYAFLEFEDYR 29 (250)
Q Consensus 4 G~I~~v~i~~~~~~~g~aFV~f~~~e 29 (250)
|.|.++++ +. +|+||+++.|..
T Consensus 6 g~v~~i~~--tk--~g~~~~~L~D~~ 27 (78)
T cd04489 6 GEISNLKR--PS--SGHLYFTLKDED 27 (78)
T ss_pred EEEecCEE--CC--CcEEEEEEEeCC
Confidence 67777776 32 469999998875
No 253
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=39.61 E-value=69 Score=21.52 Aligned_cols=24 Identities=42% Similarity=0.664 Sum_probs=19.1
Q ss_pred CcEEEEEECChHHHHHHHHhhCCC
Q 025583 18 PGYAFLEFEDYRDAEDAIRGRDGY 41 (250)
Q Consensus 18 ~g~aFV~f~~~e~A~~A~~~l~g~ 41 (250)
.||-||++.-.+++..++..+.|.
T Consensus 59 pGYvFv~~~~~~~~~~~i~~~~~v 82 (106)
T smart00738 59 PGYIFVEADLEDEVWTAIRGTPGV 82 (106)
T ss_pred CCEEEEEEEeCCcHHHHHhcCCCc
Confidence 499999998777777788777764
No 254
>PRK10943 cold shock-like protein CspC; Provisional
Probab=39.16 E-value=26 Score=22.01 Aligned_cols=39 Identities=28% Similarity=0.499 Sum_probs=20.0
Q ss_pred CCcEEEEEECChH-HH---HHHHHhhCC--CccCCeEEEEEEccCC
Q 025583 17 PPGYAFLEFEDYR-DA---EDAIRGRDG--YNFDGYRLRVELAHGG 56 (250)
Q Consensus 17 ~~g~aFV~f~~~e-~A---~~A~~~l~g--~~~~gr~i~V~~~~~~ 56 (250)
.+||+||+=.+-. +. ..|+.. .+ ....|..+..+.....
T Consensus 14 ~kGfGFI~~~~g~~dvFvH~s~l~~-~g~~~l~~G~~V~f~~~~~~ 58 (69)
T PRK10943 14 SKGFGFITPADGSKDVFVHFSAIQG-NGFKTLAEGQNVEFEIQDGQ 58 (69)
T ss_pred CCCcEEEecCCCCeeEEEEhhHccc-cCCCCCCCCCEEEEEEEECC
Confidence 4999999765432 21 223321 22 2234666666665543
No 255
>cd04458 CSP_CDS Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.
Probab=38.90 E-value=33 Score=20.93 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=13.2
Q ss_pred cccEEEEEEecCCCCCcEEEEEECC
Q 025583 3 YGPIVDIDLKIPPRPPGYAFLEFED 27 (250)
Q Consensus 3 fG~I~~v~i~~~~~~~g~aFV~f~~ 27 (250)
.|.|+.... .+||+||.=.+
T Consensus 2 ~G~Vk~~~~-----~kGfGFI~~~~ 21 (65)
T cd04458 2 TGTVKWFDD-----EKGFGFITPDD 21 (65)
T ss_pred cEEEEEEEC-----CCCeEEEecCC
Confidence 356664332 28999998776
No 256
>COG0090 RplB Ribosomal protein L2 [Translation, ribosomal structure and biogenesis]
Probab=38.72 E-value=97 Score=25.21 Aligned_cols=78 Identities=15% Similarity=0.246 Sum_probs=41.4
Q ss_pred ccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 025583 4 GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDY 83 (250)
Q Consensus 4 G~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (250)
|+|++|.- ..+.+-..|.|.|+|-|.. -|-+..|..++ ..|.+-. ..+....+
T Consensus 76 g~V~~Iey-DP~RsA~IAlv~y~dGek~--yilAp~Gl~vG-d~I~sG~-----------------------~a~ik~GN 128 (275)
T COG0090 76 GKVEDIEY-DPNRSAPIALVVYEDGEKR--YILAPEGLKVG-DVIESGK-----------------------DADIKPGN 128 (275)
T ss_pred EEEEEEEE-CCCCCcceEEEEecCCCEE--EEEccCccccC-CEEEeCC-----------------------CCCcCCcc
Confidence 34444442 2456677889999877654 11123444332 2222211 02234456
Q ss_pred eEEEeCCCCccCHHHHHHHhhccCC
Q 025583 84 RVLVTGLPSSASWQDLKDHMRRAGD 108 (250)
Q Consensus 84 ~l~v~~lp~~~~~~~l~~~f~~~g~ 108 (250)
+|.+.++|..+..-.|+.....-|.
T Consensus 129 ~lpL~~IP~Gt~VhNVE~~pG~GGq 153 (275)
T COG0090 129 ALPLGNIPEGTIVHNVELKPGDGGQ 153 (275)
T ss_pred eeeeccCCCCceEEeeeeccCCCce
Confidence 8889999987765555544444443
No 257
>PRK09890 cold shock protein CspG; Provisional
Probab=36.93 E-value=30 Score=21.78 Aligned_cols=11 Identities=27% Similarity=0.733 Sum_probs=8.4
Q ss_pred CCcEEEEEECC
Q 025583 17 PPGYAFLEFED 27 (250)
Q Consensus 17 ~~g~aFV~f~~ 27 (250)
.+||+||+=.+
T Consensus 15 ~kGfGFI~~~~ 25 (70)
T PRK09890 15 DKGFGFITPDD 25 (70)
T ss_pred CCCcEEEecCC
Confidence 38999997653
No 258
>cd07052 BMC_like_1_repeat2 Bacterial Micro-Compartment (BMC)-like domain 1 repeat 2. BMC-like domains exist in cyanobacteria, proteobacteria, and actinobacteria and are homologs of the carboxysome shell proteins. They might be encoded from putative organelles involved in unknown metabolic process. Although it has been suggested that these carboxysome shell protein homologs form hexamers and further assemble into the flat facets of the polyhedral bacterial organelles shell at present no experimental evidence exists to directly support this view. Proteins in this CD contain two tandem BMC domains. This CD includes repeat 2 (the second BMC domain of BMC like 1 proteins).
Probab=36.78 E-value=1.1e+02 Score=19.92 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=17.1
Q ss_pred EEEEEEecCCCCCcEEEEEEC-ChHHHHHHHHh
Q 025583 6 IVDIDLKIPPRPPGYAFLEFE-DYRDAEDAIRG 37 (250)
Q Consensus 6 I~~v~i~~~~~~~g~aFV~f~-~~e~A~~A~~~ 37 (250)
|++|.+. .||+|+.+. +..+.+.|++.
T Consensus 46 lv~v~~~-----Ggk~~~~ltGdva~V~~A~~a 73 (79)
T cd07052 46 LVDVRMV-----GAFGRLYLSGTEADVRAARDA 73 (79)
T ss_pred EEEEEEe-----ccEEEEEEeecHHHHHHHHHH
Confidence 4555553 788999887 44455556543
No 259
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=36.77 E-value=13 Score=34.91 Aligned_cols=16 Identities=6% Similarity=0.042 Sum_probs=8.8
Q ss_pred CCcEEEEEECChHHHH
Q 025583 17 PPGYAFLEFEDYRDAE 32 (250)
Q Consensus 17 ~~g~aFV~f~~~e~A~ 32 (250)
+..|+.+.....+.+.
T Consensus 58 ~~~y~~t~~~~~qq~a 73 (1194)
T KOG4246|consen 58 GSVYGSTSLSSSQQLA 73 (1194)
T ss_pred cccccccchhhhhhhH
Confidence 3456666666555433
No 260
>PF11910 NdhO: Cyanobacterial and plant NDH-1 subunit O; InterPro: IPR020905 NAD(P)H-quinone oxidoreductase (NDH-1) shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. It couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. NDH-1 can be composed of about 15 different subunits, although different subcomplexes with different compositions have been identified which probably have different functions. This entry represents subunit O. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process, 0005886 plasma membrane
Probab=36.23 E-value=43 Score=20.73 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=12.8
Q ss_pred ccEEEEEEecCCCCCcEEEEEECCh
Q 025583 4 GPIVDIDLKIPPRPPGYAFLEFEDY 28 (250)
Q Consensus 4 G~I~~v~i~~~~~~~g~aFV~f~~~ 28 (250)
|+|++|+ ..||+|.|.-+
T Consensus 36 GEvl~ik-------gdYa~vr~~~P 53 (67)
T PF11910_consen 36 GEVLDIK-------GDYAQVRFRVP 53 (67)
T ss_pred CeEEEec-------CCEEEEEecCC
Confidence 6777665 56999999543
No 261
>PF05573 NosL: NosL; InterPro: IPR008719 NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocentre assembly []. This entry also contains HTH-type transcriptional repressors, including YcnK. YcnK may act as a negative transcriptional regulator of YcnJ in the presence of copper and may use copper as a corepressor. The gene, ycnK, is significantly induced under copper-limiting conditions.; PDB: 2HQ3_A 2HPU_A.
Probab=36.08 E-value=31 Score=25.34 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=18.5
Q ss_pred CCCcEEEEEECChHHHHHHHHhhCCC
Q 025583 16 RPPGYAFLEFEDYRDAEDAIRGRDGY 41 (250)
Q Consensus 16 ~~~g~aFV~f~~~e~A~~A~~~l~g~ 41 (250)
.+.|..+|-|.+.++|++.+++..|.
T Consensus 112 ~pMg~~~~aF~~~~~A~~F~~~~GG~ 137 (149)
T PF05573_consen 112 GPMGPDLIAFASKEDAEAFAKEHGGK 137 (149)
T ss_dssp -TTS--EEEES-HHHHHHHHHHTEEE
T ss_pred CCCCCcccccCCHHHHHHHHHHcCCE
Confidence 46789999999999999999776444
No 262
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=35.88 E-value=1.3e+02 Score=27.76 Aligned_cols=38 Identities=24% Similarity=0.299 Sum_probs=21.8
Q ss_pred CCCceEEEeCCCCc-cCHHHHHHHhhccCCeeEEEEEec
Q 025583 80 RSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRD 117 (250)
Q Consensus 80 ~~~~~l~v~~lp~~-~~~~~l~~~f~~~g~v~~~~~~~~ 117 (250)
.....+.|.+.+.. +.-..-.+.+.++|.+..|.+...
T Consensus 59 enDrvvMVNGvsMenv~haFAvQqLrksgK~A~ItvkRp 97 (1027)
T KOG3580|consen 59 ENDRVVMVNGVSMENVLHAFAVQQLRKSGKVAAITVKRP 97 (1027)
T ss_pred cCCeEEEEcCcchhhhHHHHHHHHHHhhccceeEEeccc
Confidence 34556777777753 333333345567787766666544
No 263
>PF14893 PNMA: PNMA
Probab=35.17 E-value=28 Score=29.45 Aligned_cols=50 Identities=14% Similarity=0.291 Sum_probs=31.3
Q ss_pred CceEEEeCCCCccCHHHHHHHhhc----cCCe--eEEEEEecCCCcEEEEEecCHH
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRR----AGDV--CFSQVFRDRGGMTGIVDYTSYD 131 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~----~g~v--~~~~~~~~~~~~~a~v~f~~~~ 131 (250)
...|.|.+||.++++.+|++.+.. .|.. ....+..+.+...|+|+|...-
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~ 73 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDV 73 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeeccccc
Confidence 347899999999999999988864 3321 1111122222336788887543
No 264
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=35.14 E-value=39 Score=25.69 Aligned_cols=40 Identities=28% Similarity=0.317 Sum_probs=29.1
Q ss_pred CcEEEEEECChHHHHHHHHhhCCCccC---C--eEEEEEEccCCC
Q 025583 18 PGYAFLEFEDYRDAEDAIRGRDGYNFD---G--YRLRVELAHGGR 57 (250)
Q Consensus 18 ~g~aFV~f~~~e~A~~A~~~l~g~~~~---g--r~i~V~~~~~~~ 57 (250)
-.-|||.|.+.+++..-+..++|..|- | -...|+++-...
T Consensus 55 ~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~~~~~VE~Apyqk 99 (176)
T PF03467_consen 55 YSRAYINFKNPEDLLEFRDRFDGHVFVDSKGNEYPAVVEFAPYQK 99 (176)
T ss_dssp -EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-EEEEEEEE-SS--
T ss_pred ceEEEEEeCCHHHHHHHHHhcCCcEEECCCCCCcceeEEEcchhc
Confidence 457999999999999999999996663 2 356778876533
No 265
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=34.85 E-value=1.2e+02 Score=19.16 Aligned_cols=44 Identities=20% Similarity=0.214 Sum_probs=29.8
Q ss_pred HHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHcc
Q 025583 97 QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 141 (250)
Q Consensus 97 ~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~ 141 (250)
.+|.+.+.++| +....+.--..|.+.|+-+.+.+.+..+++.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 46667777788 444555444334478888888888888877663
No 266
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=34.43 E-value=34 Score=21.47 Aligned_cols=10 Identities=20% Similarity=0.650 Sum_probs=7.8
Q ss_pred CCcEEEEEEC
Q 025583 17 PPGYAFLEFE 26 (250)
Q Consensus 17 ~~g~aFV~f~ 26 (250)
.+||+||+=.
T Consensus 15 ~kGfGFI~~~ 24 (70)
T PRK10354 15 DKGFGFITPD 24 (70)
T ss_pred CCCcEEEecC
Confidence 3899999754
No 267
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=34.27 E-value=59 Score=20.28 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=18.1
Q ss_pred ccEEEEEEecCCCCCcEEEEEECChHH
Q 025583 4 GPIVDIDLKIPPRPPGYAFLEFEDYRD 30 (250)
Q Consensus 4 G~I~~v~i~~~~~~~g~aFV~f~~~e~ 30 (250)
|.|.++....+.+.+.|+++.+.|...
T Consensus 4 g~v~~~~~~~~k~g~~~~~~~l~D~tg 30 (84)
T cd04485 4 GLVTSVRRRRTKKGKRMAFVTLEDLTG 30 (84)
T ss_pred EEEEEeEEEEcCCCCEEEEEEEEeCCC
Confidence 667777765555555688888876543
No 268
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=34.09 E-value=55 Score=22.07 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=18.3
Q ss_pred cEEEEEEec---CCCCCcEEEEEECC
Q 025583 5 PIVDIDLKI---PPRPPGYAFLEFED 27 (250)
Q Consensus 5 ~I~~v~i~~---~~~~~g~aFV~f~~ 27 (250)
+|++|+|.. .|+-++||=|.|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 588999943 56788999999976
No 269
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.41 E-value=3.1e+02 Score=25.34 Aligned_cols=84 Identities=15% Similarity=0.173 Sum_probs=53.7
Q ss_pred EEEEEEecCCCCCcEEEEEECChHHHHHHHHhhC--CCcc------CCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 6 IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD--GYNF------DGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGV 77 (250)
Q Consensus 6 I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~--g~~~------~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
|..|.+. ..||=++.+....-+...+..+. +..+ .|++|.|++..+.+.
T Consensus 73 ~~~veia----GpgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNpt------------------- 129 (577)
T COG0018 73 IEKVEIA----GPGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPT------------------- 129 (577)
T ss_pred EeEEEEc----CCCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCCC-------------------
Confidence 4555553 14666666665444444444444 2222 478999999864332
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccC-CeeEEEEEec
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRD 117 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g-~v~~~~~~~~ 117 (250)
.-++||.|-..+=-+.|-.++...| .|+....+.|
T Consensus 130 -----kplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD 165 (577)
T COG0018 130 -----GPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVND 165 (577)
T ss_pred -----CCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECc
Confidence 2578999998888899999999998 4555554444
No 270
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=33.17 E-value=93 Score=22.56 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=22.0
Q ss_pred CCCCcEEEEEECChHHHHHHHHhhCCC
Q 025583 15 PRPPGYAFLEFEDYRDAEDAIRGRDGY 41 (250)
Q Consensus 15 ~~~~g~aFV~f~~~e~A~~A~~~l~g~ 41 (250)
...+||-||++...++...++..+.|.
T Consensus 35 ~~fpGYvFV~~~~~~~~~~~i~~~~gv 61 (145)
T TIGR00405 35 ESLKGYILVEAETKIDMRNPIIGVPHV 61 (145)
T ss_pred CCCCcEEEEEEECcHHHHHHHhCCCCE
Confidence 457999999999888888888777664
No 271
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=32.05 E-value=1.1e+02 Score=19.29 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=34.4
Q ss_pred HHHHHHhhccC-CeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEec
Q 025583 97 QDLKDHMRRAG-DVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 159 (250)
Q Consensus 97 ~~l~~~f~~~g-~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~ 159 (250)
.+|++.|.+.| ++.++.-+.+.++. +-+|+.....+... .|+=..+++ ..+.|+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~----~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGG----QRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCC----eeEEEecC
Confidence 46788888888 67888777666543 55666654432222 344456666 45666644
No 272
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=31.92 E-value=8.8 Score=34.27 Aligned_cols=67 Identities=12% Similarity=0.088 Sum_probs=46.4
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccC
Q 025583 81 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRN 147 (250)
Q Consensus 81 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g 147 (250)
..+.|++.|+++.++..+|+.+|..+-.+..+.+....... ++.|+|.-.-....|+..||+..+..
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 34578999999999999999999977554433332221111 67788887666777777777766654
No 273
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=31.51 E-value=61 Score=28.06 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=28.4
Q ss_pred cEEEEEECChHHHHHHHHhhCCCccCC--eEEEEEEc
Q 025583 19 GYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVELA 53 (250)
Q Consensus 19 g~aFV~f~~~e~A~~A~~~l~g~~~~g--r~i~V~~~ 53 (250)
-||.|++.+.+.+.....+|+|..+.. ..+-+.|.
T Consensus 259 YyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 259 YYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred EEEEEEeccchhhHHHHhccCccccccccceeeeeec
Confidence 489999999999999999999998874 34444443
No 274
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=31.21 E-value=36 Score=27.12 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=28.2
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhccCCeeEEEE
Q 025583 81 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQV 114 (250)
Q Consensus 81 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~ 114 (250)
...++|+-|+|..++++.|..+..++|.++.+..
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 3448999999999999999999999987655543
No 275
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=29.90 E-value=52 Score=20.28 Aligned_cols=60 Identities=22% Similarity=0.310 Sum_probs=32.8
Q ss_pred CceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcE-EEE-EecCHHHHHHHHHHcc
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMT-GIV-DYTSYDDMKYAIRKLD 141 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~-a~v-~f~~~~~a~~a~~~l~ 141 (250)
.+.|.|+.+......+.+...+...|.-..+.........| .+| .|.+.++|..++..|.
T Consensus 4 ~y~vQv~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 4 GYYVQVGSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEEEEEEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHH
T ss_pred cEEEEEEEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHh
Confidence 45677776666555555555555556433222222222222 223 6899999999998887
No 276
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=29.87 E-value=64 Score=21.22 Aligned_cols=23 Identities=22% Similarity=0.483 Sum_probs=17.6
Q ss_pred cEEEEEEec---CCCCCcEEEEEECC
Q 025583 5 PIVDIDLKI---PPRPPGYAFLEFED 27 (250)
Q Consensus 5 ~I~~v~i~~---~~~~~g~aFV~f~~ 27 (250)
+|++|+|.. .++.++||=|.|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 588999843 47788999999965
No 277
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=29.79 E-value=96 Score=28.40 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=29.5
Q ss_pred CcccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhC
Q 025583 2 MYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRD 39 (250)
Q Consensus 2 kfG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~ 39 (250)
-||-|+++.|.. .......+++.|.+.++|..|+..+.
T Consensus 293 tLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~ 332 (555)
T PLN02805 293 TLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATM 332 (555)
T ss_pred ceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHH
Confidence 378999999965 23446688999999999999886654
No 278
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=29.45 E-value=84 Score=23.98 Aligned_cols=34 Identities=12% Similarity=0.055 Sum_probs=26.1
Q ss_pred ccEEEEEEec--CC--CCCcEEEEEECChHHHHHHHHh
Q 025583 4 GPIVDIDLKI--PP--RPPGYAFLEFEDYRDAEDAIRG 37 (250)
Q Consensus 4 G~I~~v~i~~--~~--~~~g~aFV~f~~~e~A~~A~~~ 37 (250)
|++..|.+.. .+ ..+|-.||.|.+.++|.+.++.
T Consensus 132 ~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 132 GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 5777777743 22 5689999999999999987754
No 279
>COG0858 RbfA Ribosome-binding factor A [Translation, ribosomal structure and biogenesis]
Probab=26.89 E-value=1.4e+02 Score=21.10 Aligned_cols=49 Identities=10% Similarity=0.148 Sum_probs=23.0
Q ss_pred cccEEEEEEecCCCCCcEEEEEEC--ChHHHHHHHHhhCCC-----ccCCeEEEEEE
Q 025583 3 YGPIVDIDLKIPPRPPGYAFLEFE--DYRDAEDAIRGRDGY-----NFDGYRLRVEL 52 (250)
Q Consensus 3 fG~I~~v~i~~~~~~~g~aFV~f~--~~e~A~~A~~~l~g~-----~~~gr~i~V~~ 52 (250)
.+.|.+|.|-.. -.--.+||.+- +..+.+.++..|+.. .+.|..+.+.+
T Consensus 33 ~~~Vt~V~vS~D-l~~A~Vyvt~l~~~~~~~~~~~~~L~~A~g~ir~~l~~~~~lr~ 88 (118)
T COG0858 33 LVTVTDVEVSKD-LSHAKVYVTVLGDEESSKAEILAALNKAKGFIRSELGKRLRLRK 88 (118)
T ss_pred ceEEEEEEEcCC-CceEEEEEEecCCchhhHHHHHHHHHHhHHHHHHHHHHhCCeEe
Confidence 345777777422 12234455542 333455555555542 22355555544
No 280
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=26.72 E-value=3.1e+02 Score=25.26 Aligned_cols=97 Identities=11% Similarity=0.063 Sum_probs=53.9
Q ss_pred CcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCC----CCCCCCCCceEEEeCCCCc
Q 025583 18 PGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGS----RGVSRRSDYRVLVTGLPSS 93 (250)
Q Consensus 18 ~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~v~~lp~~ 93 (250)
.--|||.+.+++.-+-..++|+-..+.+-.|.-. +++-.+.-.+.--.|..... ..|.......+|+.+|+..
T Consensus 236 Qi~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~---GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTS 312 (621)
T COG0445 236 QIPCYITYTNEKTHEIIRDNLHRSPMYSGEIEGV---GPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTS 312 (621)
T ss_pred ccceeeecCChHHHHHHHHhhhhCchhccccccc---CCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCccccc
Confidence 3479999999998888888888766655444311 11100100000001111111 1233344568999999888
Q ss_pred cCHHHHHHHhhccCCeeEEEEEec
Q 025583 94 ASWQDLKDHMRRAGDVCFSQVFRD 117 (250)
Q Consensus 94 ~~~~~l~~~f~~~g~v~~~~~~~~ 117 (250)
..++--.++....-.+..+.|...
T Consensus 313 lP~dVQ~~~irsipGlEna~i~rp 336 (621)
T COG0445 313 LPEDVQEQIIRSIPGLENAEILRP 336 (621)
T ss_pred CCHHHHHHHHHhCcccccceeecc
Confidence 876655566665555566665543
No 281
>PF11296 DUF3097: Protein of unknown function (DUF3097); InterPro: IPR021447 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=26.49 E-value=1.6e+02 Score=23.72 Aligned_cols=31 Identities=16% Similarity=0.241 Sum_probs=25.1
Q ss_pred EEECChHHHHHHHHhhCCCccCCeEEEEEEc
Q 025583 23 LEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 53 (250)
Q Consensus 23 V~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~ 53 (250)
|..+|..-....+..-.|+.|+|+++.+...
T Consensus 50 V~LEDR~G~~R~FplgpgFl~dG~pV~L~~P 80 (275)
T PF11296_consen 50 VVLEDRHGRRRSFPLGPGFLLDGKPVTLVRP 80 (275)
T ss_pred EEEecCCCCCcccCCCCceeECCeeEEEeCC
Confidence 7888877777777667788999999888765
No 282
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=25.94 E-value=1.7e+02 Score=19.57 Aligned_cols=53 Identities=13% Similarity=0.104 Sum_probs=31.9
Q ss_pred CCCccCHHHHHHHhhccCC-eeEEEEEecCCCcEEEEEecCHHHHHHHHHHccC
Q 025583 90 LPSSASWQDLKDHMRRAGD-VCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR 142 (250)
Q Consensus 90 lp~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g 142 (250)
+....+...|...|..-|. -.-..+..|--..+|.|+|.+.+.+..|...|-.
T Consensus 20 ~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lre 73 (91)
T PF12829_consen 20 QTPNLDNNQILKQFPFPGKKNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLRE 73 (91)
T ss_pred cCcccChhHHHHhccCCCcccCCchhccccceEeEEEECCChHHHHHHHHHHHH
Confidence 3445566666666655442 2222222332222999999999999999876643
No 283
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=25.65 E-value=1.3e+02 Score=27.22 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=29.5
Q ss_pred CcccEEEEEEecCC--CCCcEEEEEECChHHHHHHHHhhC
Q 025583 2 MYGPIVDIDLKIPP--RPPGYAFLEFEDYRDAEDAIRGRD 39 (250)
Q Consensus 2 kfG~I~~v~i~~~~--~~~g~aFV~f~~~e~A~~A~~~l~ 39 (250)
.+|-|+.+.|+... ......++.|.+.++|..|+..+-
T Consensus 216 tlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 216 MLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 47899999996532 334677889999999999987764
No 284
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=25.65 E-value=1.4e+02 Score=26.13 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=28.4
Q ss_pred cccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhC
Q 025583 3 YGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRD 39 (250)
Q Consensus 3 fG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~ 39 (250)
+|-|+++.|+. ......+.++.|.+.++|.+|+..+.
T Consensus 160 lGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~ 198 (413)
T TIGR00387 160 LGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDII 198 (413)
T ss_pred ceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHH
Confidence 68899999865 23345677889999999999986654
No 285
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=25.55 E-value=2.9e+02 Score=20.71 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=22.9
Q ss_pred CcccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCC
Q 025583 2 MYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGY 41 (250)
Q Consensus 2 kfG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~ 41 (250)
.+|+|+.|.|+. +.-++|-.|-..+....|.....-++|.
T Consensus 78 ~LGdvv~veLPe~Gt~vskgds~gavESVKaaSeIysp~sGe 119 (172)
T KOG3373|consen 78 HLGDVVYVELPEVGTEVSKGDSFGAVESVKAASEIYSPVSGE 119 (172)
T ss_pred hcCceEEEEcCCCCCccccCcceeeeeehhhhhhhhCcCCce
Confidence 479999999976 3334444444444455555555444443
No 286
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=25.20 E-value=1.5e+02 Score=28.84 Aligned_cols=42 Identities=24% Similarity=0.313 Sum_probs=31.6
Q ss_pred EEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEE
Q 025583 6 IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 50 (250)
Q Consensus 6 I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V 50 (250)
|.+|..+ ..-+||-|||=..+.....||+.|-+.... +.+.|
T Consensus 200 I~Sv~a~--D~lkGyIYIEA~KqshV~~Ai~gv~niy~~-~~~lV 241 (1024)
T KOG1999|consen 200 IKSVFAK--DHLKGYIYIEADKQSHVKEAIEGVRNIYAN-RILLV 241 (1024)
T ss_pred EEEEEec--cccceeEEEEechhHHHHHHHhhhhhheec-cEEEE
Confidence 4444443 356999999999999999999988887655 55554
No 287
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=24.79 E-value=2.7e+02 Score=20.07 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=28.3
Q ss_pred CCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEcc
Q 025583 17 PPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 54 (250)
Q Consensus 17 ~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~ 54 (250)
...+-++.+.+.. ...++..|.+..+.|++|.|....
T Consensus 25 ~~~~~icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~~~ 61 (145)
T PF13689_consen 25 SSPFRICVLGDDP-FAEALSTLAGKQVGGRPIRVRRLS 61 (145)
T ss_pred CCCeEEEEECChH-HHHHHHHhhhcccCCCcEEEEECC
Confidence 4556677776665 446788999999999999998763
No 288
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=24.55 E-value=33 Score=26.12 Aligned_cols=63 Identities=11% Similarity=0.161 Sum_probs=41.2
Q ss_pred eEEEeCCCCcc-----CHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCc
Q 025583 84 RVLVTGLPSSA-----SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 148 (250)
Q Consensus 84 ~l~v~~lp~~~-----~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~ 148 (250)
.+.+.+++..+ .....+++|.+|.+.....+..... +.-|.|.+++.|..|..+++...|.|.
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfr--rvRi~f~~p~~a~~a~i~~~~~~f~~~ 79 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFR--RVRINFSNPEAAADARIKLHSTSFNGK 79 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhc--eeEEeccChhHHHHHHHHhhhcccCCC
Confidence 45666666543 1223345566555544433333222 566889999999999999999999995
No 289
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=24.20 E-value=50 Score=29.61 Aligned_cols=39 Identities=41% Similarity=0.642 Sum_probs=34.2
Q ss_pred CCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccC
Q 025583 17 PPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 55 (250)
Q Consensus 17 ~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~ 55 (250)
...+|++.|++++.+.+|+..++|..+.+..+.|.....
T Consensus 62 ~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~ 100 (534)
T KOG2187|consen 62 MPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGAT 100 (534)
T ss_pred CCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccc
Confidence 357999999999999999999999999988888877653
No 290
>PF02617 ClpS: ATP-dependent Clp protease adaptor protein ClpS; InterPro: IPR003769 In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins []. ClpS is a small alpha/beta protein that consists of three alpha-helices connected to three antiparallel beta-strands []. The protein has a globular shape, with a curved layer of three antiparallel alpha-helices over a twisted antiparallel beta-sheet. Dimerization of ClpS may occur through its N-terminal domain. This short extended N-terminal region in ClpS is followed by the central seven-residue beta-strand, which is flanked by two other beta-strands in a small beta-sheet. ; GO: 0030163 protein catabolic process; PDB: 3O2O_B 1MBU_D 3O2B_C 2WA9_D 3O1F_A 2W9R_A 1MG9_A 1MBX_C 2WA8_C 1R6O_D ....
Probab=24.12 E-value=69 Score=20.69 Aligned_cols=34 Identities=21% Similarity=0.155 Sum_probs=22.5
Q ss_pred CcEEEEEECChHHHHHHHHhhCCC-ccCCeEEEEE
Q 025583 18 PGYAFLEFEDYRDAEDAIRGRDGY-NFDGYRLRVE 51 (250)
Q Consensus 18 ~g~aFV~f~~~e~A~~A~~~l~g~-~~~gr~i~V~ 51 (250)
.|.|.|...+.+.|+.....|... ...|.||.+.
T Consensus 47 ~G~avv~~~~~e~ae~~~~~l~~~g~~~~~PL~~t 81 (82)
T PF02617_consen 47 EGRAVVGTGSREEAEEYAEKLQRAGRDSGHPLRAT 81 (82)
T ss_dssp HSEEEEEEEEHHHHHHHHHHHHHHHHHTT---EEE
T ss_pred cCCEeeeeCCHHHHHHHHHHHHHHhhccCCCeEEe
Confidence 578999988999988877666542 3556777765
No 291
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.04 E-value=1.2e+02 Score=27.17 Aligned_cols=40 Identities=18% Similarity=0.420 Sum_probs=32.6
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEE
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRL 48 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i 48 (250)
+||+|..++|- ..-.|...+.+.|++|+. -++..+.+++.
T Consensus 58 ~yGpi~tl~lG------~~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 58 KYGPVFTLRLG------SVPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred HhCCeEEEEec------CceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 79999988872 235788899999999994 57888999886
No 292
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=23.39 E-value=1.6e+02 Score=16.89 Aligned_cols=31 Identities=23% Similarity=0.218 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCCCcEEEEEECChHHHHHHH
Q 025583 5 PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 35 (250)
Q Consensus 5 ~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~ 35 (250)
.|.++.+.......+..-+.+.+.+.|.+++
T Consensus 25 nI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 25 NIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred CEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 5666666443345677777888877777765
No 293
>PRK13828 rimM 16S rRNA-processing protein RimM; Provisional
Probab=23.24 E-value=1.5e+02 Score=22.12 Aligned_cols=30 Identities=17% Similarity=0.060 Sum_probs=22.5
Q ss_pred CcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEc
Q 025583 18 PGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 53 (250)
Q Consensus 18 ~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~ 53 (250)
++..+|.|+...+.+.|. +|.|. .|.|...
T Consensus 41 ~~~~lv~f~gi~dr~~Ae-~L~g~-----~l~i~~~ 70 (161)
T PRK13828 41 KDGLVARLKGVATREAAE-ALRGL-----ELYVPRD 70 (161)
T ss_pred CCEEEEEECCCCCHHHHH-HhcCC-----EEEEEHH
Confidence 667899999999999888 55555 5666543
No 294
>COG4471 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.16 E-value=1.9e+02 Score=19.19 Aligned_cols=36 Identities=11% Similarity=0.181 Sum_probs=25.3
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCc
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYN 42 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~ 42 (250)
++||.|..+--. .--.|-|-+.++.+..+.+|....
T Consensus 23 rkfG~v~Y~Skk------~kY~vlYvn~~~ve~~~~kl~~~k 58 (90)
T COG4471 23 RKFGDVHYVSKK------SKYVVLYVNEQDVEQIVEKLSRLK 58 (90)
T ss_pred HhcCCEEEEecc------eeEEEEEECHHHHHHHHHHHhhce
Confidence 478888876532 223466788999999998887643
No 295
>PRK14594 rimM 16S rRNA-processing protein RimM; Provisional
Probab=23.06 E-value=1.4e+02 Score=22.32 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=22.3
Q ss_pred CcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEc
Q 025583 18 PGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 53 (250)
Q Consensus 18 ~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~ 53 (250)
++...|.|+...+.++|- +|.|. .|.|.-.
T Consensus 58 ~~~~lvkf~gi~dr~~Ae-~L~g~-----~l~v~~~ 87 (166)
T PRK14594 58 NNSLLLKFEEFNAPEPIK-PLIGF-----ELWVDDE 87 (166)
T ss_pred CCEEEEEEcCCCCHHHHH-HhcCC-----EEEEEHH
Confidence 567899999998888887 55554 5666644
No 296
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=22.19 E-value=55 Score=20.14 Aligned_cols=18 Identities=11% Similarity=0.388 Sum_probs=10.8
Q ss_pred CHHHHHHHhhccCCeeEE
Q 025583 95 SWQDLKDHMRRAGDVCFS 112 (250)
Q Consensus 95 ~~~~l~~~f~~~g~v~~~ 112 (250)
|--||++++.+||-++++
T Consensus 3 tlyDVqQLLK~fG~~IY~ 20 (62)
T PF06014_consen 3 TLYDVQQLLKKFGIIIYV 20 (62)
T ss_dssp SHHHHHHHHHTTS-----
T ss_pred cHHHHHHHHHHCCEEEEe
Confidence 345899999999976544
No 297
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=22.14 E-value=57 Score=20.36 Aligned_cols=21 Identities=19% Similarity=0.143 Sum_probs=15.6
Q ss_pred CcEEEEEECChHHHHHHHHhh
Q 025583 18 PGYAFLEFEDYRDAEDAIRGR 38 (250)
Q Consensus 18 ~g~aFV~f~~~e~A~~A~~~l 38 (250)
+-.+|..|.+.++|..++..+
T Consensus 44 kL~aF~pF~s~~~ALe~~~ai 64 (67)
T PF08156_consen 44 KLKAFSPFKSAEEALENANAI 64 (67)
T ss_pred hhhhccCCCCHHHHHHHHHHh
Confidence 456899998888887776544
No 298
>PF09341 Pcc1: Transcription factor Pcc1; InterPro: IPR015419 Pcc1 is a proposed transcription factor involved in the expression of genes regulated by alpha-factor and galactose; component of the EKC/KEOPS protein complex with Kae1, Gon7, Bud32, and Cgi121; related to human cancer-testis antigens [].; PDB: 2BNR_C 2P5W_C 3KLA_C 2F54_C 2P5E_C 2F53_C 3ENO_E 3ENC_B.
Probab=21.75 E-value=1.3e+02 Score=18.98 Aligned_cols=21 Identities=24% Similarity=0.058 Sum_probs=16.0
Q ss_pred cEEEEEECChHHHHHHHHhhC
Q 025583 19 GYAFLEFEDYRDAEDAIRGRD 39 (250)
Q Consensus 19 g~aFV~f~~~e~A~~A~~~l~ 39 (250)
..+-|.|.+++.|+.|+..|.
T Consensus 3 ~~l~i~f~s~~~A~ii~~sL~ 23 (76)
T PF09341_consen 3 FTLEIPFESEEKAEIIYRSLK 23 (76)
T ss_dssp EEEEEE-SSHHHHHHHHHHHH
T ss_pred EEEEEEeCCHHHHHHHHHHhC
Confidence 457799999999998886654
No 299
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=21.45 E-value=4.6e+02 Score=24.13 Aligned_cols=49 Identities=14% Similarity=0.088 Sum_probs=36.2
Q ss_pred CeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCccCHHHHHHHhhccC-CeeEEEEEec
Q 025583 45 GYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRD 117 (250)
Q Consensus 45 gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g-~v~~~~~~~~ 117 (250)
+..|.|+|+.+.+ ...++||.+-..+--+.|..++..+| .|.....+.|
T Consensus 112 ~~~v~vE~sSpNp------------------------~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD 161 (562)
T PRK12451 112 EKTVVIDYSSPNI------------------------AKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGD 161 (562)
T ss_pred CCEEEEEecCCCC------------------------CCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecC
Confidence 5689999986432 22678999988888899999999988 4555554444
No 300
>PRK14590 rimM 16S rRNA-processing protein RimM; Provisional
Probab=21.44 E-value=1.6e+02 Score=22.15 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=22.2
Q ss_pred CcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEc
Q 025583 18 PGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 53 (250)
Q Consensus 18 ~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~ 53 (250)
++..+|.|+...+.++|- +|-|. .|.|.-.
T Consensus 57 ~~~~lv~f~gi~~~e~Ae-~L~g~-----~l~i~~~ 86 (171)
T PRK14590 57 GGKFLVRFEGYDTPEEAV-KWRGG-----SLFLPQE 86 (171)
T ss_pred CCEEEEEECCCCCHHHHH-HhcCC-----EEEEEHH
Confidence 567899999999988887 45554 5666554
No 301
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=21.18 E-value=1.2e+02 Score=25.34 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=19.1
Q ss_pred EEEEecCHHHHHHHHHHccCCcc
Q 025583 123 GIVDYTSYDDMKYAIRKLDRSEF 145 (250)
Q Consensus 123 a~v~f~~~~~a~~a~~~l~g~~~ 145 (250)
|||+|++..+|+.|++.+.....
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~ 23 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP 23 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC
Confidence 79999999999999986655543
No 302
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=20.94 E-value=3.2e+02 Score=19.51 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=32.5
Q ss_pred cCHHHHHHHhhccC-CeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCc
Q 025583 94 ASWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 144 (250)
Q Consensus 94 ~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~ 144 (250)
.+...|.+.+.+-| .+..+....+ ...|.|.+.++-..|.+.|...-
T Consensus 50 ~~~~~v~~~L~~~gI~~ksi~~~~~----~~~irf~~~~~Ql~Ak~vL~~~L 97 (127)
T PRK10629 50 PDGFYVYQHLDANGIHIKSITPEND----SLLIRFDSPEQSAAAKEVLDRTL 97 (127)
T ss_pred chHHHHHHHHHHCCCCcceEEeeCC----EEEEEECCHHHHHHHHHHHHHHc
Confidence 46678888888766 3444433322 58899999998888877665544
No 303
>PF09180 ProRS-C_1: Prolyl-tRNA synthetase, C-terminal; InterPro: IPR016061 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Prolyl tRNA synthetase (6.1.1.15 from EC) exists in two forms, which are loosely related. The first form is present in the majority of eubacteria species. The second one, present in some eubacteria, is essentially present in archaea and eukaryota. Prolyl-tRNA synthetase belongs to class IIa. This domain is found at the C-terminal in archaeal and eukaryotic enzymes, as well as in certain bacterial ones.; GO: 0000166 nucleotide binding, 0004827 proline-tRNA ligase activity, 0005524 ATP binding, 0006433 prolyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1NJ6_A 1NJ2_A 1NJ5_A 1NJ1_A 1H4T_C 1H4S_A 1HC7_C 1H4Q_B 3IAL_B.
Probab=20.65 E-value=79 Score=19.71 Aligned_cols=26 Identities=15% Similarity=0.425 Sum_probs=21.0
Q ss_pred CcEEEEEECChHHHHHHHHhhCCCcc
Q 025583 18 PGYAFLEFEDYRDAEDAIRGRDGYNF 43 (250)
Q Consensus 18 ~g~aFV~f~~~e~A~~A~~~l~g~~~ 43 (250)
.||+.|-|-..++++.+|+++-|..+
T Consensus 11 gg~v~~pwcg~~ece~~ike~t~at~ 36 (68)
T PF09180_consen 11 GGFVLVPWCGDEECEEKIKEETGATI 36 (68)
T ss_dssp SSEEEEEES-SHHHHHHHHHHHS-EE
T ss_pred CCEEEEEccCCHHHHHHHHHhcCCcE
Confidence 68999999999999999998886643
No 304
>PF11181 YflT: Heat induced stress protein YflT
Probab=20.62 E-value=1.1e+02 Score=20.74 Aligned_cols=29 Identities=14% Similarity=0.176 Sum_probs=25.2
Q ss_pred EECChHHHHHHHHhhCCCccCCeEEEEEE
Q 025583 24 EFEDYRDAEDAIRGRDGYNFDGYRLRVEL 52 (250)
Q Consensus 24 ~f~~~e~A~~A~~~l~g~~~~gr~i~V~~ 52 (250)
.|.+.++|..||..|...=+....|.|--
T Consensus 5 v~~~~~E~~~~I~~L~~~Gy~~ddI~Vva 33 (103)
T PF11181_consen 5 VYDNEEEALSAIEELKAQGYSEDDIYVVA 33 (103)
T ss_pred EECCHHHHHHHHHHHHHcCCCcccEEEEE
Confidence 68899999999999998888888888854
No 305
>PF06919 Phage_T4_Gp30_7: Phage Gp30.7 protein; InterPro: IPR009690 This family consists of several phage Gp30.7 proteins of 121 residues in length. Family members seem to be exclusively from the T4-like viruses. The function of this family is unknown.
Probab=20.57 E-value=1.7e+02 Score=20.08 Aligned_cols=40 Identities=23% Similarity=0.565 Sum_probs=22.7
Q ss_pred cccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEc
Q 025583 3 YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 53 (250)
Q Consensus 3 fG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~ 53 (250)
-|.|..|.+-. ...|+|+.|++--.. ...+.|..+++.+.
T Consensus 29 NGtv~qI~~Y~---~pNYvf~~FEnG~tv--------sv~~~gs~~kI~~~ 68 (121)
T PF06919_consen 29 NGTVAQIEQYM---TPNYVFMRFENGITV--------SVTYNGSIFKIGLD 68 (121)
T ss_pred CCcEEEEeeec---CCCEEEEEecCCCEE--------EEEecCcEEEEEec
Confidence 46666666543 367999999743110 12334666666554
No 306
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=20.56 E-value=54 Score=31.22 Aligned_cols=8 Identities=13% Similarity=0.023 Sum_probs=3.8
Q ss_pred ceEEEeCC
Q 025583 83 YRVLVTGL 90 (250)
Q Consensus 83 ~~l~v~~l 90 (250)
.+.|++++
T Consensus 146 qR~f~gvv 153 (1194)
T KOG4246|consen 146 QRRFAGVV 153 (1194)
T ss_pred ceeeehhh
Confidence 34555543
No 307
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=20.51 E-value=1.7e+02 Score=22.73 Aligned_cols=32 Identities=19% Similarity=0.141 Sum_probs=22.8
Q ss_pred EEEecCCCCCcEEEEEECChHHHHHHHHhhCC
Q 025583 9 IDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG 40 (250)
Q Consensus 9 v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g 40 (250)
+.|+-.|...|-+-+...+.++|..|+..+-.
T Consensus 41 ~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~ 72 (194)
T PF01071_consen 41 VVIKADGLAAGKGVVIADDREEALEALREIFV 72 (194)
T ss_dssp EEEEESSSCTTTSEEEESSHHHHHHHHHHHHT
T ss_pred eEEccCCCCCCCEEEEeCCHHHHHHHHHHhcc
Confidence 34555565566667777999999999977643
Done!