Query 025583
Match_columns 250
No_of_seqs 296 out of 2290
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 13:16:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025583.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025583hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3md3_A Nuclear and cytoplasmic 99.9 2.1E-26 7.1E-31 173.3 18.6 137 1-159 22-164 (166)
2 4f02_A Polyadenylate-binding p 99.9 3.5E-27 1.2E-31 185.0 14.5 139 1-161 37-180 (213)
3 3tyt_A Heterogeneous nuclear r 99.9 2.8E-26 9.4E-31 178.5 16.2 155 1-157 27-202 (205)
4 1fxl_A Paraneoplastic encephal 99.9 1.5E-25 5.2E-30 168.7 17.5 128 2-149 25-159 (167)
5 3pgw_A U1-A; protein-RNA compl 99.9 3.5E-25 1.2E-29 180.8 20.6 154 1-159 35-280 (282)
6 1b7f_A Protein (SXL-lethal pro 99.9 2.3E-25 8E-30 168.0 17.7 127 2-148 26-159 (168)
7 1l3k_A Heterogeneous nuclear r 99.9 1.5E-25 5.2E-30 173.2 16.6 142 1-162 35-183 (196)
8 2qfj_A FBP-interacting repress 99.9 4.1E-25 1.4E-29 173.3 18.1 149 1-162 50-205 (216)
9 2yh0_A Splicing factor U2AF 65 99.9 3.8E-24 1.3E-28 165.6 19.8 150 5-162 41-194 (198)
10 2adc_A Polypyrimidine tract-bi 99.9 2.9E-24 9.9E-29 170.3 16.9 151 2-159 58-225 (229)
11 3smz_A Protein raver-1, ribonu 99.9 3E-24 1E-28 175.5 17.1 141 1-162 117-264 (284)
12 3nmr_A Cugbp ELAV-like family 99.9 2.5E-24 8.7E-29 163.2 15.4 127 2-147 26-163 (175)
13 1fje_B Nucleolin RBD12, protei 99.9 4.6E-25 1.6E-29 167.6 10.0 135 2-160 36-172 (175)
14 1qm9_A Polypyrimidine tract-bi 99.9 2.7E-24 9.4E-29 166.6 14.5 151 2-159 27-194 (198)
15 2g4b_A Splicing factor U2AF 65 99.9 8.9E-24 3E-28 159.9 16.6 126 5-158 41-170 (172)
16 2cjk_A Nuclear polyadenylated 99.9 1.9E-24 6.5E-29 162.8 10.2 133 1-160 25-164 (167)
17 2ghp_A U4/U6 snRNA-associated 99.9 1.2E-23 4.2E-28 172.5 14.7 142 2-161 140-290 (292)
18 3sde_A Paraspeckle component 1 99.9 3.8E-23 1.3E-27 167.0 15.1 131 1-160 44-177 (261)
19 3smz_A Protein raver-1, ribonu 99.9 1.6E-22 5.6E-27 165.2 18.2 127 1-161 44-174 (284)
20 2ghp_A U4/U6 snRNA-associated 99.9 2.2E-22 7.5E-27 165.0 15.6 129 1-161 63-196 (292)
21 2kn4_A Immunoglobulin G-bindin 99.9 5.2E-22 1.8E-26 148.4 15.0 144 9-163 3-151 (158)
22 2i2y_A Fusion protein consists 99.9 1.1E-21 3.9E-26 145.2 13.0 139 14-162 9-148 (150)
23 3pgw_S U1-70K; protein-RNA com 99.8 3.9E-19 1.3E-23 152.7 13.4 77 80-160 100-180 (437)
24 3beg_B Splicing factor, argini 99.8 3E-19 1E-23 126.0 8.2 80 79-161 13-93 (115)
25 1x4c_A Splicing factor, argini 99.8 1.7E-17 5.8E-22 115.7 14.6 82 77-161 10-92 (108)
26 1rk8_A CG8781-PA, CG8781-PA pr 99.8 5.9E-18 2E-22 127.1 11.7 134 23-162 11-152 (165)
27 2lea_A Serine/arginine-rich sp 99.7 6.9E-18 2.4E-22 122.4 7.5 120 18-162 4-127 (135)
28 2jvr_A Nucleolar protein 3; RN 99.7 6.1E-17 2.1E-21 112.9 8.9 80 79-162 25-105 (111)
29 4fxv_A ELAV-like protein 1; RN 99.7 2E-16 7E-21 108.3 11.2 77 80-160 17-97 (99)
30 4f25_A Polyadenylate-binding p 99.7 3.9E-17 1.3E-21 115.2 6.1 85 1-97 27-112 (115)
31 2fy1_A RNA-binding motif prote 99.7 1.3E-15 4.3E-20 107.5 12.4 79 80-162 5-86 (116)
32 3s8s_A Histone-lysine N-methyl 99.7 1.5E-15 5.2E-20 105.9 11.6 78 80-161 4-85 (110)
33 2cq0_A Eukaryotic translation 99.7 3.4E-15 1.2E-19 103.0 13.2 81 79-163 12-96 (103)
34 4f25_A Polyadenylate-binding p 99.6 1.1E-15 3.9E-20 107.6 10.7 76 82-161 5-82 (115)
35 1x4d_A Matrin 3; structural ge 99.6 1.3E-15 4.4E-20 104.4 10.5 77 80-162 13-92 (102)
36 3ex7_B RNA-binding protein 8A; 99.6 7.9E-16 2.7E-20 110.2 9.9 81 78-162 18-102 (126)
37 2cqi_A Nucleolysin TIAR; RNA r 99.6 5.5E-15 1.9E-19 102.0 13.8 82 78-163 11-94 (103)
38 2cq3_A RNA-binding protein 9; 99.6 5.9E-15 2E-19 101.8 13.9 83 77-163 10-94 (103)
39 2dnm_A SRP46 splicing factor; 99.6 1.5E-15 5.2E-20 104.8 10.9 83 77-163 8-94 (103)
40 1x4a_A Splicing factor, argini 99.6 5.6E-15 1.9E-19 103.0 13.2 83 77-163 17-100 (109)
41 1x5s_A Cold-inducible RNA-bind 99.6 2.4E-15 8.2E-20 103.6 11.1 81 78-162 8-92 (102)
42 2do0_A HnRNP M, heterogeneous 99.6 1.4E-14 4.6E-19 101.8 15.1 81 78-162 11-94 (114)
43 2d9p_A Polyadenylate-binding p 99.6 5.2E-15 1.8E-19 102.1 12.6 81 78-163 11-94 (103)
44 2dgs_A DAZ-associated protein 99.6 4.6E-15 1.6E-19 101.6 12.1 81 78-163 6-90 (99)
45 2do4_A Squamous cell carcinoma 99.6 8.4E-15 2.9E-19 100.5 13.4 80 79-162 14-96 (100)
46 2dgt_A RNA-binding protein 30; 99.6 5.5E-15 1.9E-19 99.8 12.2 78 78-163 6-83 (92)
47 2cqb_A Peptidyl-prolyl CIS-tra 99.6 2.8E-15 9.6E-20 103.2 10.8 81 79-163 9-93 (102)
48 2cqc_A Arginine/serine-rich sp 99.6 6.7E-15 2.3E-19 99.9 12.4 79 77-159 10-92 (95)
49 2e5h_A Zinc finger CCHC-type a 99.6 4.9E-15 1.7E-19 100.4 11.6 78 77-158 11-92 (94)
50 2cpz_A CUG triplet repeat RNA- 99.6 1.2E-14 4.1E-19 102.3 14.0 81 79-163 22-106 (115)
51 2wbr_A GW182, gawky, LD47780P; 99.6 3.2E-15 1.1E-19 98.1 10.1 73 81-159 6-78 (89)
52 2dgo_A Cytotoxic granule-assoc 99.6 2.3E-14 7.8E-19 100.9 15.4 82 78-163 11-96 (115)
53 2dgx_A KIAA0430 protein; RRM d 99.6 4.7E-15 1.6E-19 101.0 11.4 80 79-162 6-90 (96)
54 1whw_A Hypothetical protein ri 99.6 6.5E-15 2.2E-19 100.8 12.2 81 79-163 5-89 (99)
55 2dnz_A Probable RNA-binding pr 99.6 5.2E-15 1.8E-19 100.5 11.6 80 80-163 3-86 (95)
56 1sjq_A Polypyrimidine tract-bi 99.6 2.1E-15 7.1E-20 103.5 9.4 77 80-162 14-92 (105)
57 2dnp_A RNA-binding protein 14; 99.6 4.1E-15 1.4E-19 100.0 10.8 76 79-162 6-81 (90)
58 2dng_A Eukaryotic translation 99.6 1.2E-14 3.9E-19 100.3 13.3 81 77-163 10-94 (103)
59 3mdf_A Peptidyl-prolyl CIS-tra 99.6 4E-15 1.4E-19 98.9 10.6 76 79-158 4-83 (85)
60 1wi8_A EIF-4B, eukaryotic tran 99.6 7.5E-15 2.6E-19 101.5 12.0 82 77-164 10-96 (104)
61 3r27_A HnRNP L, heterogeneous 99.6 5.6E-15 1.9E-19 100.3 11.0 75 80-160 19-95 (100)
62 3bs9_A Nucleolysin TIA-1 isofo 99.6 5.6E-15 1.9E-19 98.6 10.9 77 80-160 4-84 (87)
63 2dnq_A RNA-binding protein 4B; 99.6 5.7E-15 1.9E-19 99.3 10.9 77 79-163 5-81 (90)
64 2dgu_A Heterogeneous nuclear r 99.6 1.4E-14 4.7E-19 100.0 12.9 77 79-163 8-84 (103)
65 1x4h_A RNA-binding protein 28; 99.6 1.2E-14 3.9E-19 101.7 12.6 82 78-163 11-102 (111)
66 3ulh_A THO complex subunit 4; 99.6 7.6E-15 2.6E-19 102.0 11.5 79 77-159 24-105 (107)
67 2ywk_A Putative RNA-binding pr 99.6 6E-15 2.1E-19 100.2 10.8 79 77-159 11-92 (95)
68 2dgp_A Bruno-like 4, RNA bindi 99.6 6.7E-15 2.3E-19 102.1 10.9 82 78-163 9-97 (106)
69 2cph_A RNA binding motif prote 99.6 1E-14 3.5E-19 101.3 11.9 83 77-163 10-98 (107)
70 2dnh_A Bruno-like 5, RNA bindi 99.6 2E-14 6.7E-19 99.5 13.3 83 80-163 13-98 (105)
71 4a8x_A RNA-binding protein wit 99.6 6E-15 2E-19 98.7 10.1 77 82-162 4-85 (88)
72 1x5u_A Splicing factor 3B subu 99.6 1.4E-14 4.9E-19 100.2 12.2 81 78-162 11-95 (105)
73 2cpf_A RNA binding motif prote 99.6 9.9E-15 3.4E-19 99.7 11.2 79 81-163 4-89 (98)
74 2cq1_A PTB-like protein L; RRM 99.6 2.5E-14 8.5E-19 98.0 13.0 78 79-162 12-91 (101)
75 1x4g_A Nucleolysin TIAR; struc 99.6 1.1E-14 3.9E-19 101.4 11.3 79 79-163 22-100 (109)
76 1x5t_A Splicing factor 3B subu 99.6 6.4E-15 2.2E-19 100.3 9.7 79 81-163 4-87 (96)
77 3md1_A Nuclear and cytoplasmic 99.6 1.4E-14 4.7E-19 95.8 11.0 75 83-161 2-80 (83)
78 2e5j_A Methenyltetrahydrofolat 99.6 1.3E-14 4.5E-19 98.9 11.1 79 79-162 16-94 (97)
79 1wf1_A RNA-binding protein RAL 99.6 7.4E-15 2.5E-19 102.6 9.9 76 79-162 24-100 (110)
80 1wex_A Hypothetical protein (r 99.6 2.4E-14 8.4E-19 98.6 12.3 78 79-162 12-91 (104)
81 2cqp_A RNA-binding protein 12; 99.6 9.2E-15 3.1E-19 99.9 10.1 80 78-161 11-94 (98)
82 2dgv_A HnRNP M, heterogeneous 99.6 1.3E-14 4.5E-19 97.9 10.6 80 79-162 5-86 (92)
83 2cpd_A Apobec-1 stimulating pr 99.6 3.6E-14 1.2E-18 97.1 12.9 76 79-162 12-89 (99)
84 2div_A TRNA selenocysteine ass 99.6 1.8E-14 6.1E-19 98.6 11.3 84 79-162 6-94 (99)
85 2cpj_A Non-POU domain-containi 99.6 2.1E-14 7.1E-19 98.3 11.5 78 79-162 12-89 (99)
86 1why_A Hypothetical protein ri 99.6 2.1E-14 7.1E-19 97.9 11.4 77 80-162 15-93 (97)
87 2ytc_A PRE-mRNA-splicing facto 99.6 1.4E-14 4.9E-19 96.2 10.4 75 78-158 8-83 (85)
88 2ad9_A Polypyrimidine tract-bi 99.6 1.3E-14 4.5E-19 101.9 10.6 78 79-162 28-107 (119)
89 2cpe_A RNA-binding protein EWS 99.6 1.9E-14 6.5E-19 100.9 11.5 81 79-163 12-104 (113)
90 2hgl_A HNRPF protein, heteroge 99.6 6.6E-15 2.2E-19 106.4 9.2 78 77-159 39-122 (136)
91 2x1f_A MRNA 3'-END-processing 99.6 1.5E-14 5.2E-19 98.4 10.4 77 82-162 2-82 (96)
92 2la6_A RNA-binding protein FUS 99.6 1.6E-14 5.6E-19 98.8 10.6 78 77-158 8-97 (99)
93 3pgw_S U1-70K; protein-RNA com 99.6 4.1E-14 1.4E-18 121.6 15.4 59 1-59 124-185 (437)
94 1p27_B RNA-binding protein 8A; 99.6 2.1E-14 7.1E-19 99.5 11.0 79 79-161 20-102 (106)
95 2cpi_A CCR4-NOT transcription 99.6 2.2E-14 7.6E-19 100.3 11.2 81 79-163 12-102 (111)
96 2dhg_A TRNA selenocysteine ass 99.6 2.3E-14 7.7E-19 99.0 11.1 79 79-161 6-89 (104)
97 1u6f_A Tcubp1, RNA-binding pro 99.6 5.4E-14 1.9E-18 102.3 13.6 82 78-163 38-123 (139)
98 2dgw_A Probable RNA-binding pr 99.6 4.3E-14 1.5E-18 95.2 12.1 80 77-162 5-87 (91)
99 2hvz_A Splicing factor, argini 99.6 1.7E-14 5.7E-19 99.1 10.1 76 83-163 1-76 (101)
100 1oo0_B CG8781-PA, drosophila Y 99.6 2.1E-14 7.2E-19 100.2 10.7 80 79-162 23-106 (110)
101 2hgn_A Heterogeneous nuclear r 99.6 9.3E-16 3.2E-20 111.2 3.8 119 18-161 1-122 (139)
102 2jvo_A Nucleolar protein 3; nu 99.6 1.8E-14 6.2E-19 100.2 10.0 78 78-163 27-104 (108)
103 2dh8_A DAZ-associated protein 99.6 2.7E-14 9.2E-19 98.8 10.9 80 78-162 12-95 (105)
104 2jrs_A RNA-binding protein 39; 99.6 2.7E-14 9.2E-19 99.3 10.8 78 79-160 23-104 (108)
105 2kxn_B Transformer-2 protein h 99.6 1.1E-14 3.8E-19 104.5 9.1 80 78-161 42-125 (129)
106 2cqh_A IGF-II mRNA-binding pro 99.6 1.3E-14 4.6E-19 98.1 8.9 77 80-163 6-84 (93)
107 1h2v_Z 20 kDa nuclear CAP bind 99.6 4.9E-14 1.7E-18 104.6 12.7 79 80-162 37-119 (156)
108 2lxi_A RNA-binding protein 10; 99.6 5.3E-15 1.8E-19 99.6 6.8 75 83-161 2-82 (91)
109 2e44_A Insulin-like growth fac 99.6 2.5E-14 8.7E-19 97.3 10.3 80 78-161 11-91 (96)
110 2fc9_A NCL protein; structure 99.6 2.7E-14 9.3E-19 98.1 10.5 79 78-163 11-92 (101)
111 3p5t_L Cleavage and polyadenyl 99.6 4.7E-15 1.6E-19 99.7 6.4 75 83-161 2-82 (90)
112 2cqd_A RNA-binding region cont 99.6 6.3E-14 2.2E-18 98.7 12.5 80 77-161 12-95 (116)
113 1x4f_A Matrin 3; structural ge 99.6 2.8E-14 9.6E-19 99.1 10.1 77 79-161 22-101 (112)
114 2err_A Ataxin-2-binding protei 99.6 2.1E-14 7.4E-19 100.0 9.5 78 79-160 26-105 (109)
115 2kt5_A RNA and export factor-b 99.6 8.5E-14 2.9E-18 99.3 12.7 81 77-161 30-113 (124)
116 2lkz_A RNA-binding protein 5; 99.6 1.8E-14 6.3E-19 97.5 8.6 77 80-160 7-93 (95)
117 2khc_A Testis-specific RNP-typ 99.6 5.3E-14 1.8E-18 99.4 11.4 77 78-158 36-116 (118)
118 1wez_A HnRNP H', FTP-3, hetero 99.6 4.6E-14 1.6E-18 97.1 10.7 77 78-160 11-90 (102)
119 2dnn_A RNA-binding protein 12; 99.5 3E-14 1E-18 99.0 9.7 76 79-160 13-91 (109)
120 2xnq_A Nuclear polyadenylated 99.5 5.4E-14 1.8E-18 95.8 10.7 75 78-160 18-93 (97)
121 2ek1_A RNA-binding protein 12; 99.5 1.3E-14 4.3E-19 98.6 7.5 77 79-159 12-92 (95)
122 1whx_A Hypothetical protein ri 99.5 1E-14 3.5E-19 102.0 7.1 75 80-160 8-82 (111)
123 3ucg_A Polyadenylate-binding p 99.5 5.6E-14 1.9E-18 94.1 10.5 75 82-161 6-84 (89)
124 1s79_A Lupus LA protein; RRM, 99.5 1.9E-14 6.5E-19 99.1 8.3 74 80-158 9-85 (103)
125 2db1_A Heterogeneous nuclear r 99.5 4.3E-14 1.5E-18 99.9 10.1 77 78-159 13-95 (118)
126 1wg5_A Heterogeneous nuclear r 99.5 4.3E-14 1.5E-18 97.6 9.9 79 77-160 10-92 (104)
127 2cpx_A Hypothetical protein FL 99.5 4.6E-14 1.6E-18 99.3 10.1 81 79-163 22-106 (115)
128 3s7r_A Heterogeneous nuclear r 99.5 9.9E-14 3.4E-18 92.5 11.2 75 79-158 8-86 (87)
129 3n9u_C Cleavage and polyadenyl 99.5 5.2E-14 1.8E-18 104.3 10.8 76 81-160 54-135 (156)
130 2e5g_A U6 snRNA-specific termi 99.5 8E-14 2.7E-18 94.4 10.7 73 81-159 7-79 (94)
131 2kvi_A Nuclear polyadenylated 99.5 2.4E-14 8E-19 97.5 8.1 75 79-161 7-82 (96)
132 2la4_A Nuclear and cytoplasmic 99.5 2.8E-14 9.7E-19 98.0 8.6 74 80-159 25-98 (101)
133 1x5p_A Negative elongation fac 99.5 2.7E-13 9.1E-18 92.4 13.3 77 79-163 12-88 (97)
134 1sjr_A Polypyrimidine tract-bi 99.5 6.1E-14 2.1E-18 103.5 10.8 81 80-162 44-124 (164)
135 3ns6_A Eukaryotic translation 99.5 3.5E-14 1.2E-18 97.4 8.9 76 81-159 5-90 (100)
136 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 9E-14 3.1E-18 101.2 11.5 77 77-157 58-138 (140)
137 3lqv_A PRE-mRNA branch site pr 99.5 6.3E-14 2.1E-18 98.6 10.2 79 79-161 5-84 (115)
138 1x4e_A RNA binding motif, sing 99.5 1E-14 3.5E-19 96.9 5.8 69 80-148 3-75 (85)
139 2jwn_A Embryonic polyadenylate 99.5 8.2E-14 2.8E-18 99.3 10.8 76 82-162 36-115 (124)
140 3lqv_A PRE-mRNA branch site pr 99.5 9.5E-15 3.3E-19 102.8 5.4 79 2-108 31-109 (115)
141 4fxv_A ELAV-like protein 1; RN 99.5 1.7E-14 5.8E-19 98.7 6.5 55 1-55 41-98 (99)
142 1p1t_A Cleavage stimulation fa 99.5 6.2E-14 2.1E-18 96.7 9.3 78 81-162 7-88 (104)
143 2cqg_A TDP-43, TAR DNA-binding 99.5 4.8E-13 1.7E-17 92.1 13.7 79 78-162 11-93 (103)
144 1x5o_A RNA binding motif, sing 99.5 1.3E-13 4.3E-18 96.8 10.8 82 79-160 22-110 (114)
145 1wel_A RNA-binding protein 12; 99.5 7.4E-14 2.5E-18 99.6 9.6 78 77-159 20-101 (124)
146 2wbr_A GW182, gawky, LD47780P; 99.5 2.6E-14 8.8E-19 93.8 6.4 50 2-54 30-79 (89)
147 2cq4_A RNA binding motif prote 99.5 7.3E-14 2.5E-18 98.1 9.2 77 81-162 24-104 (114)
148 2e5i_A Heterogeneous nuclear r 99.5 3.2E-13 1.1E-17 95.6 12.3 77 82-162 25-102 (124)
149 1x4b_A Heterogeneous nuclear r 99.5 1.3E-13 4.3E-18 97.2 10.1 78 81-163 26-107 (116)
150 2cpy_A RNA-binding protein 12; 99.5 8.6E-14 2.9E-18 97.8 9.1 77 79-160 12-92 (114)
151 2fc8_A NCL protein; structure 99.5 3.5E-13 1.2E-17 92.6 12.0 79 78-163 11-93 (102)
152 2krb_A Eukaryotic translation 99.5 2.4E-14 8.4E-19 94.2 5.8 66 83-148 2-75 (81)
153 3s8s_A Histone-lysine N-methyl 99.5 3.5E-14 1.2E-18 99.0 6.8 55 1-55 28-85 (110)
154 2cq2_A Hypothetical protein LO 99.5 5.4E-14 1.9E-18 97.8 7.6 79 80-160 23-104 (114)
155 2a3j_A U1 small nuclear ribonu 99.5 1.2E-13 4.2E-18 98.5 9.7 79 79-161 26-109 (127)
156 2rs2_A Musashi-1, RNA-binding 99.5 1.5E-13 5.1E-18 95.7 9.8 79 80-163 23-105 (109)
157 3zzy_A Polypyrimidine tract-bi 99.5 2.5E-13 8.4E-18 96.6 11.0 80 80-162 26-106 (130)
158 2a3j_A U1 small nuclear ribonu 99.5 2.2E-14 7.6E-19 102.4 5.4 55 2-56 56-110 (127)
159 2nlw_A Eukaryotic translation 99.5 1.7E-13 5.7E-18 94.8 9.3 77 80-160 13-98 (105)
160 2mss_A Protein (musashi1); RNA 99.5 4.9E-14 1.7E-18 91.3 6.2 69 84-157 1-73 (75)
161 2hzc_A Splicing factor U2AF 65 99.5 1.4E-13 4.9E-18 91.7 8.5 71 80-157 4-85 (87)
162 1fjc_A Nucleolin RBD2, protein 99.5 9.6E-14 3.3E-18 94.4 7.6 79 79-162 13-91 (96)
163 1nu4_A U1A RNA binding domain; 99.5 2.1E-13 7E-18 92.9 9.3 80 79-162 5-89 (97)
164 2f3j_A RNA and export factor b 99.5 2.2E-13 7.6E-18 103.0 10.1 78 78-159 84-164 (177)
165 2dis_A Unnamed protein product 99.5 2.5E-13 8.6E-18 94.5 9.5 79 80-162 6-92 (109)
166 2m2b_A RNA-binding protein 10; 99.5 1.8E-13 6E-18 98.6 9.0 79 79-162 20-108 (131)
167 2hvz_A Splicing factor, argini 99.5 3.8E-14 1.3E-18 97.3 5.2 78 2-91 23-100 (101)
168 2pe8_A Splicing factor 45; RRM 99.5 1E-13 3.4E-18 95.7 7.1 55 1-55 35-93 (105)
169 1uaw_A Mouse-musashi-1; RNP-ty 99.5 8.3E-14 2.8E-18 90.6 6.2 69 84-157 2-74 (77)
170 3q2s_C Cleavage and polyadenyl 99.5 1.5E-13 5E-18 108.3 8.8 75 81-159 67-147 (229)
171 2diu_A KIAA0430 protein; struc 99.5 3.2E-13 1.1E-17 89.5 8.9 72 81-162 8-84 (96)
172 1wg1_A KIAA1579 protein, homol 99.5 2.2E-13 7.5E-18 91.1 8.3 74 81-161 4-77 (88)
173 2j76_E EIF-4B, EIF4B, eukaryot 99.5 6.4E-14 2.2E-18 96.0 5.8 77 78-160 15-96 (100)
174 2lmi_A GRSF-1, G-rich sequence 99.5 8.1E-14 2.8E-18 96.7 6.3 77 78-159 7-89 (107)
175 1x4a_A Splicing factor, argini 99.5 1.7E-13 5.8E-18 95.4 7.8 58 1-58 44-101 (109)
176 1jmt_A Splicing factor U2AF 35 99.5 8.1E-14 2.8E-18 96.0 5.7 52 2-53 50-103 (104)
177 1whw_A Hypothetical protein ri 99.4 4.2E-13 1.4E-17 91.7 9.0 57 2-58 31-90 (99)
178 2dnz_A Probable RNA-binding pr 99.4 4.2E-13 1.4E-17 91.0 8.6 58 1-58 27-87 (95)
179 2cpi_A CCR4-NOT transcription 99.4 2.9E-13 1E-17 94.5 7.9 57 1-57 40-102 (111)
180 2hgm_A HNRPF protein, heteroge 99.4 2.1E-13 7.3E-18 96.9 7.2 75 78-158 38-117 (126)
181 2ki2_A SS-DNA binding protein 99.4 7.5E-14 2.6E-18 93.7 4.6 72 83-159 2-77 (90)
182 2dgx_A KIAA0430 protein; RRM d 99.4 2.9E-13 9.8E-18 92.0 7.5 56 2-57 36-91 (96)
183 2dha_A FLJ20171 protein; RRM d 99.4 2.3E-13 7.8E-18 96.5 7.2 75 80-159 21-102 (123)
184 3md1_A Nuclear and cytoplasmic 99.4 2.7E-13 9.3E-18 89.5 7.1 56 1-56 23-81 (83)
185 3tyt_A Heterogeneous nuclear r 99.4 5.3E-13 1.8E-17 103.4 9.8 76 81-161 3-79 (205)
186 4f02_A Polyadenylate-binding p 99.4 9.6E-13 3.3E-17 102.6 11.3 77 79-159 12-92 (213)
187 3egn_A RNA-binding protein 40; 99.4 6.7E-13 2.3E-17 97.0 9.6 79 80-162 43-130 (143)
188 3d2w_A TAR DNA-binding protein 99.4 9E-13 3.1E-17 88.2 9.4 77 78-161 7-83 (89)
189 1fj7_A Nucleolin RBD1, protein 99.4 9.8E-14 3.4E-18 95.3 4.7 77 80-162 15-95 (101)
190 2cq0_A Eukaryotic translation 99.4 3.9E-13 1.3E-17 92.6 7.7 58 1-58 37-97 (103)
191 2cqb_A Peptidyl-prolyl CIS-tra 99.4 2.5E-13 8.6E-18 93.3 6.7 59 1-59 34-95 (102)
192 3bs9_A Nucleolysin TIA-1 isofo 99.4 2E-13 6.8E-18 91.0 6.0 56 1-56 28-86 (87)
193 3ns6_A Eukaryotic translation 99.4 1.7E-13 5.7E-18 93.9 5.5 55 1-55 34-92 (100)
194 2dnm_A SRP46 splicing factor; 99.4 3.2E-13 1.1E-17 93.0 7.0 58 1-58 35-95 (103)
195 2e5h_A Zinc finger CCHC-type a 99.4 4.5E-13 1.5E-17 90.6 7.5 54 1-54 38-94 (94)
196 2do4_A Squamous cell carcinoma 99.4 4E-13 1.4E-17 92.0 7.3 57 1-57 39-97 (100)
197 2fy1_A RNA-binding motif prote 99.4 5.4E-13 1.9E-17 93.9 8.1 57 2-58 30-88 (116)
198 2dgo_A Cytotoxic granule-assoc 99.4 8.8E-13 3E-17 92.6 9.1 59 1-59 37-98 (115)
199 3v4m_A Splicing factor U2AF 65 99.4 3.3E-13 1.1E-17 93.1 6.7 54 1-54 37-95 (105)
200 2bz2_A Negative elongation fac 99.4 8.8E-13 3E-17 93.4 9.1 76 79-162 36-111 (121)
201 2lxi_A RNA-binding protein 10; 99.4 9.1E-14 3.1E-18 93.5 3.6 57 2-58 24-85 (91)
202 2dgs_A DAZ-associated protein 99.4 9.3E-13 3.2E-17 90.0 8.7 57 1-58 32-91 (99)
203 2nlw_A Eukaryotic translation 99.4 2.4E-13 8.4E-18 94.0 5.7 56 1-56 43-100 (105)
204 2x1f_A MRNA 3'-END-processing 99.4 5.5E-13 1.9E-17 90.6 7.4 56 2-57 25-83 (96)
205 2d9p_A Polyadenylate-binding p 99.4 5.4E-13 1.9E-17 91.8 7.4 58 1-58 37-95 (103)
206 2cq3_A RNA-binding protein 9; 99.4 1.1E-12 3.6E-17 90.4 8.9 59 1-59 37-96 (103)
207 3mdf_A Peptidyl-prolyl CIS-tra 99.4 2.9E-13 9.8E-18 89.8 5.8 54 1-54 29-85 (85)
208 1x5u_A Splicing factor 3B subu 99.4 6.5E-13 2.2E-17 91.8 7.4 57 2-58 38-97 (105)
209 2cqi_A Nucleolysin TIAR; RNA r 99.4 1.2E-12 4.2E-17 90.0 8.7 57 2-58 38-95 (103)
210 2lcw_A RNA-binding protein FUS 99.1 2.5E-14 8.5E-19 100.8 0.0 79 80-162 5-95 (116)
211 2lkz_A RNA-binding protein 5; 99.4 2E-13 7E-18 92.4 4.5 55 1-55 31-94 (95)
212 1x5t_A Splicing factor 3B subu 99.4 5.2E-13 1.8E-17 90.7 6.4 57 2-58 28-88 (96)
213 1iqt_A AUF1, heterogeneous nuc 99.4 2.5E-13 8.5E-18 87.9 4.6 64 84-148 1-68 (75)
214 1p27_B RNA-binding protein 8A; 99.4 4.2E-13 1.4E-17 92.9 5.7 56 1-56 45-103 (106)
215 1nu4_A U1A RNA binding domain; 99.4 1.9E-13 6.6E-18 93.0 3.8 57 1-57 34-90 (97)
216 2xs2_A Deleted in azoospermia- 99.4 8.6E-13 2.9E-17 90.6 7.1 74 80-159 7-83 (102)
217 2dgv_A HnRNP M, heterogeneous 99.4 4.9E-13 1.7E-17 90.0 5.7 57 2-58 31-88 (92)
218 2do0_A HnRNP M, heterogeneous 99.4 2.5E-12 8.4E-17 90.2 9.5 57 1-57 37-95 (114)
219 2cpf_A RNA binding motif prote 99.4 7.2E-13 2.5E-17 90.3 6.5 57 2-58 28-90 (98)
220 2voo_A Lupus LA protein; RNA-b 99.4 6.2E-12 2.1E-16 96.4 12.4 117 27-159 63-184 (193)
221 1x5s_A Cold-inducible RNA-bind 99.4 6.7E-13 2.3E-17 91.2 6.3 57 2-58 35-94 (102)
222 1fxl_A Paraneoplastic encephal 99.4 4.4E-12 1.5E-16 94.6 11.3 75 82-160 2-80 (167)
223 1oo0_B CG8781-PA, drosophila Y 99.4 8.1E-13 2.8E-17 92.1 6.7 57 1-57 48-107 (110)
224 2cqc_A Arginine/serine-rich sp 99.4 7.5E-13 2.5E-17 89.7 6.4 54 2-55 38-94 (95)
225 2kxn_B Transformer-2 protein h 99.4 6.8E-13 2.3E-17 95.1 6.4 56 1-56 68-126 (129)
226 2ywk_A Putative RNA-binding pr 99.4 6.2E-13 2.1E-17 90.1 5.8 55 1-55 38-94 (95)
227 2dnh_A Bruno-like 5, RNA bindi 99.4 1.1E-12 3.7E-17 90.6 7.1 58 1-58 37-99 (105)
228 3p5t_L Cleavage and polyadenyl 99.4 1.2E-13 4.1E-18 92.8 2.1 56 2-57 24-84 (90)
229 2cpz_A CUG triplet repeat RNA- 99.4 6.4E-13 2.2E-17 93.4 6.0 58 1-58 47-107 (115)
230 1x5p_A Negative elongation fac 99.4 2E-12 7E-17 87.9 8.3 55 1-58 35-89 (97)
231 1wf0_A TDP-43, TAR DNA-binding 99.4 1.2E-12 4E-17 87.5 6.9 74 81-163 4-79 (88)
232 1u6f_A Tcubp1, RNA-binding pro 99.4 1.2E-12 4E-17 95.2 7.5 58 2-59 65-125 (139)
233 2dit_A HIV TAT specific factor 99.4 1.2E-12 4.2E-17 91.5 7.3 56 1-57 48-103 (112)
234 2krb_A Eukaryotic translation 99.4 3.1E-13 1.1E-17 88.9 4.0 50 1-50 29-80 (81)
235 2cqd_A RNA-binding region cont 99.4 3.5E-12 1.2E-16 89.7 9.6 56 2-58 40-98 (116)
236 2cph_A RNA binding motif prote 99.4 1.9E-12 6.6E-17 89.6 8.1 57 2-58 38-99 (107)
237 2jrs_A RNA-binding protein 39; 99.4 7E-13 2.4E-17 92.1 5.6 56 1-56 48-106 (108)
238 3s6e_A RNA-binding protein 39; 99.4 7.4E-13 2.5E-17 92.5 5.6 53 1-54 39-91 (114)
239 1x4h_A RNA-binding protein 28; 99.4 2.3E-12 8E-17 89.8 8.2 57 2-58 38-103 (111)
240 3r27_A HnRNP L, heterogeneous 99.4 1.3E-12 4.6E-17 88.6 6.6 53 1-56 43-97 (100)
241 3ulh_A THO complex subunit 4; 99.4 1.1E-12 3.8E-17 90.9 6.4 53 2-54 52-106 (107)
242 3u1l_A PRE-mRNA-splicing facto 99.4 2.2E-12 7.4E-17 101.4 8.7 78 78-161 130-228 (240)
243 1b7f_A Protein (SXL-lethal pro 99.4 4.6E-12 1.6E-16 94.7 10.1 76 82-161 3-82 (168)
244 2khc_A Testis-specific RNP-typ 99.4 1.1E-12 3.7E-17 92.6 6.2 54 1-54 62-118 (118)
245 2dgu_A Heterogeneous nuclear r 99.3 4.4E-12 1.5E-16 87.2 9.0 53 2-59 34-86 (103)
246 2j8a_A Histone-lysine N-methyl 99.3 3.9E-12 1.3E-16 89.1 8.6 75 83-161 3-95 (136)
247 3ue2_A Poly(U)-binding-splicin 99.3 1.1E-12 3.9E-17 92.2 5.9 54 1-54 47-107 (118)
248 3ucg_A Polyadenylate-binding p 99.3 1.9E-12 6.4E-17 86.6 6.8 54 1-55 28-84 (89)
249 1x4d_A Matrin 3; structural ge 99.3 1.6E-12 5.6E-17 88.9 6.5 54 1-57 38-93 (102)
250 2err_A Ataxin-2-binding protei 99.3 8.7E-13 3E-17 91.8 5.2 56 1-56 51-107 (109)
251 3md3_A Nuclear and cytoplasmic 99.3 5E-12 1.7E-16 94.2 9.7 73 84-160 2-77 (166)
252 2dnl_A Cytoplasmic polyadenyla 99.3 3.5E-12 1.2E-16 89.5 8.3 61 80-141 6-73 (114)
253 3ex7_B RNA-binding protein 8A; 99.3 1.5E-12 5.1E-17 93.0 6.3 58 2-59 45-105 (126)
254 2cq1_A PTB-like protein L; RRM 99.3 6.2E-12 2.1E-16 86.0 8.9 55 1-58 37-93 (101)
255 1wi8_A EIF-4B, eukaryotic tran 99.3 3.6E-12 1.2E-16 87.8 7.8 56 1-58 37-96 (104)
256 2dng_A Eukaryotic translation 99.3 3.2E-12 1.1E-16 88.0 7.4 56 1-58 37-95 (103)
257 2adc_A Polypyrimidine tract-bi 99.3 3.9E-12 1.3E-16 100.3 8.9 78 78-160 30-108 (229)
258 2la6_A RNA-binding protein FUS 99.3 1.2E-12 4E-17 89.5 5.1 54 1-54 35-99 (99)
259 2cq4_A RNA binding motif prote 99.3 2E-12 6.9E-17 90.7 6.4 55 1-56 47-104 (114)
260 2dnq_A RNA-binding protein 4B; 99.3 4.1E-12 1.4E-16 85.2 7.7 52 2-58 31-82 (90)
261 1sjq_A Polypyrimidine tract-bi 99.3 1.4E-12 4.9E-17 89.3 5.4 55 2-59 39-95 (105)
262 2dgt_A RNA-binding protein 30; 99.3 4.7E-12 1.6E-16 85.2 7.9 52 2-58 33-84 (92)
263 4a8x_A RNA-binding protein wit 99.3 2.3E-12 7.9E-17 85.9 6.2 55 2-56 27-85 (88)
264 2cpe_A RNA-binding protein EWS 99.3 2.3E-12 8E-17 90.2 6.5 58 1-58 37-105 (113)
265 2dhg_A TRNA selenocysteine ass 99.3 1.7E-12 5.7E-17 89.5 5.5 56 3-58 34-92 (104)
266 2kt5_A RNA and export factor-b 99.3 3.7E-12 1.3E-16 90.7 7.4 57 2-58 58-116 (124)
267 1x4c_A Splicing factor, argini 99.3 7.3E-12 2.5E-16 86.9 8.7 54 1-58 37-95 (108)
268 2dit_A HIV TAT specific factor 99.3 4.1E-11 1.4E-15 83.6 12.6 80 79-162 12-102 (112)
269 1h2v_Z 20 kDa nuclear CAP bind 99.3 2.7E-12 9.2E-17 95.2 6.9 58 1-58 61-121 (156)
270 2xnq_A Nuclear polyadenylated 99.3 3.6E-12 1.2E-16 86.7 7.0 51 1-56 45-95 (97)
271 2dgp_A Bruno-like 4, RNA bindi 99.3 2.8E-12 9.6E-17 88.7 6.5 57 2-58 36-98 (106)
272 2jwn_A Embryonic polyadenylate 99.3 5.8E-12 2E-16 89.6 8.0 55 2-57 59-116 (124)
273 2jvr_A Nucleolar protein 3; RN 99.3 1.9E-12 6.4E-17 90.1 5.3 54 2-56 51-105 (111)
274 1s79_A Lupus LA protein; RRM, 99.3 2.2E-12 7.6E-17 88.6 5.6 53 2-55 34-88 (103)
275 1wex_A Hypothetical protein (r 99.3 4.5E-12 1.5E-16 87.2 7.1 55 1-58 37-93 (104)
276 1l3k_A Heterogeneous nuclear r 99.3 1.6E-11 5.4E-16 94.1 11.0 77 79-160 10-90 (196)
277 1p1t_A Cleavage stimulation fa 99.3 1.4E-12 4.8E-17 89.8 4.3 56 2-57 31-89 (104)
278 2cqp_A RNA-binding protein 12; 99.3 9.6E-13 3.3E-17 89.7 3.3 56 1-56 37-95 (98)
279 1x4g_A Nucleolysin TIAR; struc 99.3 6.8E-12 2.3E-16 87.2 7.7 54 2-58 48-101 (109)
280 2kvi_A Nuclear polyadenylated 99.3 2.1E-12 7.2E-17 87.7 4.9 53 1-58 33-85 (96)
281 2j76_E EIF-4B, EIF4B, eukaryot 99.3 3.1E-12 1.1E-16 87.5 5.7 54 1-56 41-98 (100)
282 3zzy_A Polypyrimidine tract-bi 99.3 6.1E-12 2.1E-16 89.4 7.3 55 1-57 50-107 (130)
283 2ki2_A SS-DNA binding protein 99.3 1.3E-12 4.5E-17 87.5 3.6 56 2-58 24-82 (90)
284 2d9o_A DNAJ (HSP40) homolog, s 99.3 7E-12 2.4E-16 85.4 7.2 53 1-57 39-91 (100)
285 2pe8_A Splicing factor 45; RRM 99.3 3.8E-11 1.3E-15 82.7 11.0 76 81-160 7-92 (105)
286 2kn4_A Immunoglobulin G-bindin 99.3 5.6E-12 1.9E-16 93.6 7.3 57 2-58 93-152 (158)
287 3n9u_C Cleavage and polyadenyl 99.3 3.3E-12 1.1E-16 94.5 6.0 54 2-55 78-136 (156)
288 2cq2_A Hypothetical protein LO 99.3 4.6E-12 1.6E-16 88.0 6.3 53 2-57 50-107 (114)
289 1why_A Hypothetical protein ri 99.3 6.2E-12 2.1E-16 85.5 6.9 53 2-57 40-94 (97)
290 2ad9_A Polypyrimidine tract-bi 99.3 4.6E-12 1.6E-16 88.9 6.3 56 1-59 53-110 (119)
291 2diu_A KIAA0430 protein; struc 99.3 2.9E-12 9.8E-17 84.9 4.9 50 2-58 36-86 (96)
292 2rs2_A Musashi-1, RNA-binding 99.3 9.6E-12 3.3E-16 86.4 7.9 56 1-57 47-105 (109)
293 2ek1_A RNA-binding protein 12; 99.3 1.1E-12 3.8E-17 88.8 3.0 54 1-54 37-93 (95)
294 2lea_A Serine/arginine-rich sp 99.3 1.8E-12 6.2E-17 93.7 4.3 58 1-58 69-129 (135)
295 2cpj_A Non-POU domain-containi 99.3 6.4E-12 2.2E-16 85.8 6.8 54 1-57 37-90 (99)
296 2div_A TRNA selenocysteine ass 99.3 2E-12 6.9E-17 88.2 4.3 56 2-57 32-95 (99)
297 2mss_A Protein (musashi1); RNA 99.3 1.7E-12 5.8E-17 83.9 3.7 51 2-53 22-75 (75)
298 1rk8_A CG8781-PA, CG8781-PA pr 99.3 3.5E-12 1.2E-16 95.5 5.9 57 1-57 94-153 (165)
299 2dnp_A RNA-binding protein 14; 99.3 6.5E-12 2.2E-16 84.2 6.6 51 2-57 32-82 (90)
300 1x4b_A Heterogeneous nuclear r 99.3 7.5E-12 2.5E-16 88.0 7.2 57 1-58 49-108 (116)
301 2qfj_A FBP-interacting repress 99.3 1.1E-11 3.7E-16 96.6 8.7 73 82-158 28-104 (216)
302 2cpd_A Apobec-1 stimulating pr 99.3 1.5E-11 5.1E-16 83.9 8.3 52 2-58 38-91 (99)
303 2jvo_A Nucleolar protein 3; nu 99.3 4.9E-12 1.7E-16 87.8 5.9 52 1-57 53-104 (108)
304 2dh8_A DAZ-associated protein 99.3 4.7E-12 1.6E-16 87.4 5.7 56 2-58 39-97 (105)
305 2e5i_A Heterogeneous nuclear r 99.3 9.4E-12 3.2E-16 88.0 7.2 54 1-57 47-103 (124)
306 1x4e_A RNA binding motif, sing 99.3 1.4E-12 4.7E-17 86.5 2.8 53 1-53 27-82 (85)
307 2dis_A Unnamed protein product 99.3 1.5E-11 5.2E-16 85.3 8.2 57 2-58 31-94 (109)
308 1sjr_A Polypyrimidine tract-bi 99.3 5.7E-12 1.9E-16 93.0 6.2 56 1-57 68-125 (164)
309 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.3 5.8E-12 2E-16 91.5 6.2 53 1-53 85-140 (140)
310 2bz2_A Negative elongation fac 99.3 4.9E-12 1.7E-16 89.6 5.6 54 1-57 59-112 (121)
311 2cpx_A Hypothetical protein FL 99.3 6.5E-12 2.2E-16 88.1 6.2 56 2-58 48-107 (115)
312 2fc9_A NCL protein; structure 99.3 1.1E-11 3.7E-16 84.9 7.1 54 2-58 38-93 (101)
313 1x4f_A Matrin 3; structural ge 99.3 5.5E-12 1.9E-16 87.5 5.6 55 1-58 48-104 (112)
314 1wf1_A RNA-binding protein RAL 99.3 7E-12 2.4E-16 87.3 6.1 52 1-57 50-101 (110)
315 1x5o_A RNA binding motif, sing 99.3 8E-12 2.7E-16 87.5 6.4 55 1-55 47-111 (114)
316 1fjc_A Nucleolin RBD2, protein 99.3 5E-12 1.7E-16 85.8 5.1 55 1-57 38-92 (96)
317 2ytc_A PRE-mRNA-splicing facto 99.3 7.7E-12 2.6E-16 82.8 5.9 50 2-54 35-85 (85)
318 3s7r_A Heterogeneous nuclear r 99.3 9.8E-12 3.4E-16 82.7 6.4 52 1-53 33-87 (87)
319 3nmr_A Cugbp ELAV-like family 99.3 2.7E-11 9.2E-16 91.0 9.5 65 82-146 3-73 (175)
320 2dgw_A Probable RNA-binding pr 99.3 7.8E-12 2.7E-16 83.9 5.9 54 2-57 33-88 (91)
321 1whx_A Hypothetical protein ri 99.3 7E-12 2.4E-16 87.4 5.8 52 2-56 33-84 (111)
322 1uaw_A Mouse-musashi-1; RNP-ty 99.2 4.1E-12 1.4E-16 82.5 4.0 52 1-53 22-76 (77)
323 3sde_A Paraspeckle component 1 99.2 3.8E-11 1.3E-15 96.5 10.6 75 79-159 19-93 (261)
324 3pgw_A U1-A; protein-RNA compl 99.2 4.4E-11 1.5E-15 97.1 11.0 77 79-159 6-87 (282)
325 1qm9_A Polypyrimidine tract-bi 99.2 1.1E-11 3.8E-16 95.3 6.8 74 82-160 3-77 (198)
326 2fc8_A NCL protein; structure 99.2 2.1E-11 7.1E-16 83.6 7.1 53 6-58 39-94 (102)
327 2la4_A Nuclear and cytoplasmic 99.2 5.7E-12 1.9E-16 86.3 4.3 51 2-55 50-100 (101)
328 2e5j_A Methenyltetrahydrofolat 99.2 5.8E-12 2E-16 85.6 3.8 54 2-57 42-95 (97)
329 2cqg_A TDP-43, TAR DNA-binding 99.2 3E-11 1E-15 83.0 7.4 56 1-58 37-95 (103)
330 1wg5_A Heterogeneous nuclear r 99.2 2.9E-11 1E-15 83.2 7.1 55 1-56 37-94 (104)
331 2i2y_A Fusion protein consists 99.2 1.8E-11 6.3E-16 90.0 6.3 53 2-56 96-148 (150)
332 3q2s_C Cleavage and polyadenyl 99.2 1.1E-11 3.6E-16 97.7 5.1 54 2-55 91-149 (229)
333 1owx_A Lupus LA protein, SS-B, 99.2 1.1E-10 3.9E-15 81.5 9.8 70 77-148 13-86 (121)
334 1wez_A HnRNP H', FTP-3, hetero 99.2 1.8E-11 6E-16 84.0 5.4 55 1-57 37-93 (102)
335 2dnn_A RNA-binding protein 12; 99.2 3.4E-11 1.2E-15 83.5 6.7 52 2-55 39-92 (109)
336 2lcw_A RNA-binding protein FUS 98.8 1.6E-12 5.6E-17 91.4 0.0 58 1-58 29-97 (116)
337 3egn_A RNA-binding protein 40; 99.2 1.1E-11 3.7E-16 90.5 4.3 56 2-57 68-131 (143)
338 2f3j_A RNA and export factor b 99.2 1.5E-11 5E-16 93.0 5.1 56 2-57 111-168 (177)
339 2g4b_A Splicing factor U2AF 65 99.2 9E-11 3.1E-15 88.0 8.9 72 81-159 3-85 (172)
340 3beg_B Splicing factor, argini 99.2 3.7E-11 1.3E-15 84.3 6.1 51 1-55 38-93 (115)
341 2cpy_A RNA-binding protein 12; 99.2 1.7E-11 5.7E-16 85.9 4.2 55 1-56 37-94 (114)
342 3v4m_A Splicing factor U2AF 65 99.2 1.4E-10 4.7E-15 79.9 8.5 74 82-159 5-94 (105)
343 3tht_A Alkylated DNA repair pr 99.2 5.9E-11 2E-15 98.2 7.9 66 79-146 15-82 (345)
344 1wel_A RNA-binding protein 12; 99.2 4.9E-12 1.7E-16 90.1 1.2 54 1-55 47-103 (124)
345 2m2b_A RNA-binding protein 10; 99.2 5.9E-12 2E-16 90.5 1.5 57 1-58 45-110 (131)
346 1wg1_A KIAA1579 protein, homol 99.2 3.1E-11 1.1E-15 80.5 4.8 51 1-55 27-77 (88)
347 2db1_A Heterogeneous nuclear r 99.2 1.7E-11 6E-16 86.4 3.7 54 1-55 39-97 (118)
348 2cqh_A IGF-II mRNA-binding pro 99.2 3.1E-11 1.1E-15 81.3 4.8 53 2-58 31-85 (93)
349 3ue2_A Poly(U)-binding-splicin 99.1 2.3E-10 8E-15 80.3 9.0 75 81-159 19-106 (118)
350 2yh0_A Splicing factor U2AF 65 99.1 1.6E-10 5.5E-15 88.6 9.0 72 82-160 4-86 (198)
351 1fj7_A Nucleolin RBD1, protein 99.1 8.6E-12 3E-16 85.4 1.5 55 2-57 40-96 (101)
352 1iqt_A AUF1, heterogeneous nuc 99.1 1.4E-11 4.8E-16 79.5 2.3 51 2-53 22-75 (75)
353 3s6e_A RNA-binding protein 39; 99.1 3.3E-10 1.1E-14 79.0 9.2 76 80-159 5-90 (114)
354 2cjk_A Nuclear polyadenylated 99.1 9.2E-11 3.2E-15 87.5 6.8 64 82-147 3-70 (167)
355 2hgl_A HNRPF protein, heteroge 99.1 2.3E-11 7.7E-16 87.7 3.1 53 1-54 66-123 (136)
356 2j8a_A Histone-lysine N-methyl 99.1 3.7E-11 1.3E-15 84.2 3.7 55 1-55 28-95 (136)
357 2e44_A Insulin-like growth fac 99.1 1.7E-10 5.9E-15 78.1 7.0 54 2-56 38-92 (96)
358 1fje_B Nucleolin RBD12, protei 99.1 6.2E-11 2.1E-15 89.2 5.1 79 78-161 9-90 (175)
359 1jmt_A Splicing factor U2AF 35 99.1 7.9E-11 2.7E-15 80.9 4.5 67 87-157 20-101 (104)
360 2hgn_A Heterogeneous nuclear r 99.1 2.5E-11 8.4E-16 87.8 2.0 55 1-57 68-124 (139)
361 2e5g_A U6 snRNA-specific termi 99.1 1.8E-10 6.2E-15 77.6 6.2 53 1-57 30-83 (94)
362 2dnr_A Synaptojanin-1; RRM dom 99.1 2.2E-10 7.6E-15 75.1 6.1 48 2-55 38-85 (91)
363 3u1l_A PRE-mRNA-splicing facto 99.1 1.2E-10 4.1E-15 91.5 5.7 54 1-57 165-230 (240)
364 2lmi_A GRSF-1, G-rich sequence 99.1 3.7E-11 1.3E-15 83.1 2.5 53 2-55 34-91 (107)
365 2xs2_A Deleted in azoospermia- 99.1 7.7E-11 2.6E-15 80.8 3.5 55 1-57 31-87 (102)
366 2d9o_A DNAJ (HSP40) homolog, s 99.0 4.7E-09 1.6E-13 71.3 11.5 64 92-162 27-90 (100)
367 2hzc_A Splicing factor U2AF 65 99.0 4E-10 1.4E-14 74.7 5.5 44 5-52 43-86 (87)
368 2voo_A Lupus LA protein; RNA-b 99.0 4.8E-10 1.6E-14 85.8 6.2 54 1-55 131-186 (193)
369 2hgm_A HNRPF protein, heteroge 99.0 3.3E-10 1.1E-14 80.4 4.7 52 1-54 64-119 (126)
370 2dha_A FLJ20171 protein; RRM d 99.0 1.1E-10 3.9E-15 82.6 1.8 52 2-54 46-103 (123)
371 3dxb_A Thioredoxin N-terminall 99.0 6.3E-10 2.2E-14 87.1 6.0 54 1-54 151-211 (222)
372 3d2w_A TAR DNA-binding protein 99.0 1.3E-09 4.5E-14 72.6 6.5 50 1-56 33-84 (89)
373 2dnr_A Synaptojanin-1; RRM dom 98.9 7.1E-09 2.4E-13 68.0 7.6 70 82-160 7-84 (91)
374 2dnl_A Cytoplasmic polyadenyla 98.9 1.9E-09 6.6E-14 75.3 5.0 50 1-53 30-85 (114)
375 1wf0_A TDP-43, TAR DNA-binding 98.9 1.8E-09 6E-14 71.8 4.1 54 1-58 27-80 (88)
376 1ufw_A Synaptojanin 2; RNP dom 98.8 5.9E-09 2E-13 68.7 4.8 46 2-53 47-92 (95)
377 3tht_A Alkylated DNA repair pr 98.8 8.2E-09 2.8E-13 85.4 6.3 51 1-54 42-97 (345)
378 1ufw_A Synaptojanin 2; RNP dom 98.7 3.2E-08 1.1E-12 65.2 7.2 71 80-159 13-92 (95)
379 2l9w_A U4/U6 snRNA-associated- 98.6 3.7E-07 1.3E-11 61.3 8.5 70 82-157 21-95 (117)
380 3dxb_A Thioredoxin N-terminall 98.3 1.2E-06 4E-11 68.4 7.0 62 94-159 141-210 (222)
381 1owx_A Lupus LA protein, SS-B, 98.3 1.6E-06 5.3E-11 60.5 6.3 52 1-55 41-95 (121)
382 2l9w_A U4/U6 snRNA-associated- 97.6 0.00015 5.2E-09 48.8 5.7 47 4-53 51-97 (117)
383 1whv_A Poly(A)-specific ribonu 97.5 0.00092 3.1E-08 44.0 8.7 55 82-141 16-70 (100)
384 1uw4_A UPF3X; nonsense mediate 97.5 0.0014 4.8E-08 43.0 9.3 69 83-151 2-76 (91)
385 2dhx_A Poly (ADP-ribose) polym 97.4 0.00098 3.3E-08 44.4 7.9 70 81-159 7-81 (104)
386 1wey_A Calcipressin 1; structu 97.4 0.00087 3E-08 44.8 7.3 72 82-159 5-81 (104)
387 1wwh_A Nucleoporin 35, nucleop 97.3 0.0021 7.3E-08 44.2 9.3 73 80-159 22-94 (119)
388 3ctr_A Poly(A)-specific ribonu 97.1 0.00078 2.7E-08 44.5 4.9 53 84-141 8-60 (101)
389 2dhx_A Poly (ADP-ribose) polym 96.8 0.0044 1.5E-07 41.3 6.6 62 4-95 38-99 (104)
390 1wwh_A Nucleoporin 35, nucleop 96.8 0.0042 1.5E-07 42.7 6.7 49 2-54 46-95 (119)
391 2l08_A Regulator of nonsense t 96.6 0.0051 1.7E-07 40.6 5.8 71 82-152 9-85 (97)
392 3p3d_A Nucleoporin 53; structu 96.2 0.0077 2.6E-07 42.0 4.9 73 82-160 7-97 (132)
393 1wey_A Calcipressin 1; structu 96.1 0.011 3.7E-07 39.5 5.0 51 2-55 33-83 (104)
394 3p3d_A Nucleoporin 53; structu 95.4 0.013 4.4E-07 40.9 3.4 36 18-54 62-97 (132)
395 3pq1_A Poly(A) RNA polymerase; 95.4 0.0095 3.3E-07 51.0 3.3 54 83-138 54-107 (464)
396 2g0c_A ATP-dependent RNA helic 89.9 0.43 1.5E-05 29.7 4.1 44 5-54 32-75 (76)
397 3d45_A Poly(A)-specific ribonu 86.8 2 6.8E-05 37.4 7.5 56 82-142 440-495 (507)
398 3pq1_A Poly(A) RNA polymerase; 83.6 0.37 1.3E-05 41.3 1.4 34 1-36 74-107 (464)
399 3lpe_A Putative transcription 83.0 5.7 0.0002 25.6 6.7 34 6-41 40-73 (92)
400 2e5p_A Protein PHF1, PHD finge 82.4 0.95 3.2E-05 27.1 2.4 21 3-28 27-47 (68)
401 4eyt_A Telomerase associated p 79.8 9.5 0.00033 24.4 7.6 57 81-141 11-67 (129)
402 3ctr_A Poly(A)-specific ribonu 79.5 2.2 7.6E-05 28.0 3.7 21 19-39 40-60 (101)
403 2eqj_A Metal-response element- 79.3 1.4 4.7E-05 26.5 2.4 20 4-28 32-51 (66)
404 1whv_A Poly(A)-specific ribonu 79.2 2.4 8E-05 27.9 3.7 21 19-39 50-70 (100)
405 2m0o_A PHD finger protein 1; t 79.1 1.4 4.8E-05 27.2 2.4 21 3-28 44-64 (79)
406 1uw4_A UPF3X; nonsense mediate 76.9 3.6 0.00012 26.6 4.2 38 17-54 44-86 (91)
407 2e5q_A PHD finger protein 19; 75.7 0.7 2.4E-05 27.3 0.4 12 17-28 34-45 (63)
408 2l08_A Regulator of nonsense t 74.5 4.2 0.00014 26.6 4.0 37 18-54 53-94 (97)
409 4hcz_A PHD finger protein 1; p 72.7 2.8 9.5E-05 24.4 2.4 21 3-28 21-41 (58)
410 3h7h_B Transcription elongatio 63.3 8.6 0.0003 25.6 3.8 35 6-42 41-75 (106)
411 1c9o_A CSPB, cold-shock protei 55.5 6.5 0.00022 23.6 1.9 20 3-27 3-22 (66)
412 3a0j_A Cold shock protein; OB- 51.7 8 0.00027 23.7 1.9 20 3-27 3-22 (73)
413 1nz8_A Transcription antitermi 51.6 44 0.0015 22.4 5.9 25 17-41 61-90 (119)
414 3cam_A Cold-shock domain famil 51.6 8.2 0.00028 23.2 1.9 20 3-27 3-22 (67)
415 2kcm_A Cold shock domain famil 50.4 6.6 0.00023 24.2 1.4 39 18-56 12-55 (74)
416 3fry_A Probable copper-exporti 49.6 37 0.0013 19.9 5.7 55 83-140 7-61 (73)
417 3j21_T 50S ribosomal protein L 49.5 47 0.0016 21.0 6.2 51 90-140 30-83 (86)
418 4e8u_A Putative uncharacterize 48.1 44 0.0015 24.3 5.6 47 84-131 14-73 (172)
419 2xk0_A Polycomb protein PCL; t 47.6 13 0.00045 22.4 2.3 11 18-28 41-51 (69)
420 2exu_A Transcription initiatio 45.2 18 0.00061 27.1 3.3 34 6-41 139-172 (200)
421 2k5n_A Putative cold-shock pro 44.3 16 0.00054 22.5 2.4 10 18-27 14-23 (74)
422 1g6p_A Cold shock protein TMCS 44.2 13 0.00044 22.2 2.0 10 18-27 12-21 (66)
423 3u5e_X 60S ribosomal protein L 41.2 76 0.0026 22.2 5.8 54 86-139 82-138 (142)
424 3p8b_B Transcription antitermi 41.2 33 0.0011 24.1 4.1 34 6-41 33-66 (152)
425 4a17_R RPL23A, 60S ribosomal p 40.6 78 0.0027 22.4 5.7 54 86-139 90-146 (150)
426 3aqq_A Calcium-regulated heat 39.5 18 0.00062 25.6 2.4 11 17-27 73-83 (147)
427 1h95_A CSD, Y-box binding prot 38.6 17 0.00059 22.6 2.0 10 17-26 19-28 (79)
428 4bby_A Alkyldihydroxyacetoneph 35.4 40 0.0014 30.2 4.6 38 2-39 370-409 (658)
429 3iz5_X 60S ribosomal protein L 33.4 85 0.0029 22.2 5.0 52 87-138 93-147 (152)
430 3i2z_B RNA chaperone, negative 31.4 33 0.0011 20.7 2.4 11 17-27 16-26 (71)
431 2i9x_A Putative septation prot 30.0 42 0.0014 21.4 2.7 23 5-27 5-30 (87)
432 3ulj_A LIN28B, DNA-binding pro 29.0 30 0.001 22.1 2.0 9 17-25 19-27 (90)
433 4a4j_A Pacszia, cation-transpo 28.5 84 0.0029 17.7 5.5 54 84-139 5-61 (69)
434 3ts2_A Protein LIN-28 homolog 28.4 29 0.00098 24.5 2.0 10 17-26 20-29 (148)
435 2oug_A Transcriptional activat 28.4 1.4E+02 0.0047 21.0 5.7 26 16-41 50-75 (162)
436 2zkr_s 60S ribosomal protein L 27.9 1.6E+02 0.0056 20.9 5.9 53 86-138 96-151 (156)
437 1vq8_S 50S ribosomal protein L 27.8 1.2E+02 0.004 19.1 5.1 48 89-136 28-78 (85)
438 2ytv_A Cold shock domain-conta 27.6 18 0.00061 22.5 0.7 10 18-27 18-27 (79)
439 3pm9_A Putative oxidoreductase 27.1 73 0.0025 27.2 4.6 50 2-52 213-264 (476)
440 3dxs_X Copper-transporting ATP 26.7 96 0.0033 17.8 6.8 54 84-139 5-62 (74)
441 2lss_A Cold shock-like protein 32.4 14 0.00047 22.4 0.0 11 17-27 15-25 (70)
442 2ia9_A Putative septation prot 26.3 52 0.0018 21.5 2.7 23 5-27 5-30 (100)
443 2cu1_A Mitogen-activated prote 26.2 57 0.002 21.3 2.8 54 89-146 23-77 (103)
444 2yty_A Cold shock domain-conta 25.4 37 0.0013 21.6 1.9 10 18-27 28-37 (88)
445 2i9z_A Putative septation prot 24.6 59 0.002 21.5 2.8 23 5-27 5-30 (105)
446 2hpu_A NOSL protein; alpha bet 22.9 38 0.0013 24.7 1.8 25 16-40 107-132 (175)
447 1wvf_A 4-cresol dehydrogenase 22.6 86 0.0029 27.0 4.3 35 2-36 226-262 (520)
448 1gh9_A 8.3 kDa protein (gene M 22.3 35 0.0012 20.8 1.2 26 20-45 36-61 (71)
449 2x4i_A CAG38848, uncharacteriz 21.6 1.9E+02 0.0064 19.3 5.1 25 89-114 85-111 (114)
450 1e8g_A Vanillyl-alcohol oxidas 21.5 1E+02 0.0035 26.9 4.6 35 2-36 258-294 (560)
451 2uuu_A Alkyldihydroxyacetoneph 21.4 1E+02 0.0035 27.1 4.6 38 2-39 300-339 (584)
452 2bh8_A 1B11; transcription, mo 20.4 62 0.0021 21.0 2.3 9 18-26 28-36 (101)
No 1
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.1e-26 Score=173.26 Aligned_cols=137 Identities=20% Similarity=0.340 Sum_probs=119.1
Q ss_pred CCcccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 1 MMYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVS 78 (250)
Q Consensus 1 ~kfG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
.+||+|.+|.|.. .+.++|||||+|.++++|++|+..|||..|.|+.|.|.++..... ..
T Consensus 22 ~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~------------------~~ 83 (166)
T 3md3_A 22 QVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQ------------------SS 83 (166)
T ss_dssp GGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCC------------------CC
T ss_pred HhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCC------------------CC
Confidence 3799999999964 567889999999999999999999999999999999999865432 12
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 154 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 154 (250)
.....+|+|+|||..+++++|+++|.+||.|..+.+..+...+ +|||+|.+.++|..|+..|||..+.| +.|
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~i 159 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG----RPL 159 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT----EEC
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC----cEE
Confidence 3456799999999999999999999999999999998874432 99999999999999999999999999 677
Q ss_pred EEEec
Q 025583 155 RVREY 159 (250)
Q Consensus 155 ~v~~~ 159 (250)
.|...
T Consensus 160 ~v~~a 164 (166)
T 3md3_A 160 RINWA 164 (166)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 77654
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.95 E-value=3.5e-27 Score=185.04 Aligned_cols=139 Identities=22% Similarity=0.323 Sum_probs=120.7
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGV 77 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
.+||+|++|.|+. ++.++|||||+|.++++|++||..||+..+.|+.|.|.++.......
T Consensus 37 ~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~----------------- 99 (213)
T 4f02_A 37 SPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR----------------- 99 (213)
T ss_dssp GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHH-----------------
T ss_pred HhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccccccccc-----------------
Confidence 3799999999964 78889999999999999999999999999999999999876432211
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc--EEEEEecCHHHHHHHHHHccCCcccCcceeeEEE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM--TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 155 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~--~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 155 (250)
.....+|||+|||..+++++|+++|.+||.|..+.|..+..+. ||||+|.+.++|.+|++.|||..|.| +.|.
T Consensus 100 -~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g----~~i~ 174 (213)
T 4f02_A 100 -KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND----RKVF 174 (213)
T ss_dssp -HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECE
T ss_pred -ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECC----EEEE
Confidence 1233589999999999999999999999999999998875543 99999999999999999999999999 6888
Q ss_pred EEeccc
Q 025583 156 VREYDS 161 (250)
Q Consensus 156 v~~~~~ 161 (250)
|.....
T Consensus 175 V~~a~~ 180 (213)
T 4f02_A 175 VGRFKS 180 (213)
T ss_dssp EEECCC
T ss_pred EEEcCC
Confidence 876543
No 3
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.94 E-value=2.8e-26 Score=178.54 Aligned_cols=155 Identities=14% Similarity=0.191 Sum_probs=118.9
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCC---CCC----CCCCCC-
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSM---DRY----SSYSSG- 72 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~---~~~----~~~~~~- 72 (250)
++||+|++|+|+.. .+|||||+|.++++|+.||+.|||..|.|++|.|.+++.....+... ... ..+...
T Consensus 27 ~~~G~v~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~ 104 (205)
T 3tyt_A 27 CLYGNVEKVKFMKS--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESR 104 (205)
T ss_dssp TTTSCEEEEEECTT--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCT
T ss_pred HhcCCeEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCc
Confidence 47999999999753 48999999999999999999999999999999999987543211100 000 000000
Q ss_pred -CCC--------CCCCCCCceEEEeCCCCccCHHHHHHHhhccCCe--eEEEEEecCCC--cEEEEEecCHHHHHHHHHH
Q 025583 73 -GSR--------GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDV--CFSQVFRDRGG--MTGIVDYTSYDDMKYAIRK 139 (250)
Q Consensus 73 -~~~--------~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v--~~~~~~~~~~~--~~a~v~f~~~~~a~~a~~~ 139 (250)
.+. .....+..+|||+|||..+++++|+++|.+||.| ..+.+..+..+ ++|||+|.+.++|..|+..
T Consensus 105 ~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~ 184 (205)
T 3tyt_A 105 NNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGF 184 (205)
T ss_dssp TCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHH
T ss_pred cccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHH
Confidence 000 0112345689999999999999999999999998 78888766432 3999999999999999999
Q ss_pred ccCCcccCcceeeEEEEE
Q 025583 140 LDRSEFRNAFSRSYVRVR 157 (250)
Q Consensus 140 l~g~~~~g~~~~~~i~v~ 157 (250)
|||..|.|......+.|+
T Consensus 185 lng~~~~g~~~~~p~~vk 202 (205)
T 3tyt_A 185 LNHYQMKNPNGPYPYTLK 202 (205)
T ss_dssp HTTCEECCSSSSSCEECE
T ss_pred hCCCCccCCCCCcceEEE
Confidence 999999997655555554
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.94 E-value=1.5e-25 Score=168.70 Aligned_cols=128 Identities=23% Similarity=0.353 Sum_probs=113.9
Q ss_pred CcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 2 MYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVS 78 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
+||+|.+|.|+. ++.++|||||+|.++++|+.|+..|||..|.|+.|.|.++.....
T Consensus 25 ~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~-------------------- 84 (167)
T 1fxl_A 25 SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA-------------------- 84 (167)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCG--------------------
T ss_pred hcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcc--------------------
Confidence 699999999954 677889999999999999999999999999999999999865322
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcc
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAF 149 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~ 149 (250)
.....+|+|+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|..|++.|||..+.|+.
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 159 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 159 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCc
Confidence 233468999999999999999999999999999999887532 29999999999999999999999999953
No 5
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.94 E-value=3.5e-25 Score=180.83 Aligned_cols=154 Identities=17% Similarity=0.206 Sum_probs=121.2
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCC-C--------------
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMD-R-------------- 65 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~-~-------------- 65 (250)
.+||+|++|.|+.+++++|||||+|.+.++|++|+..|||..|.|+.|.|.++........... .
T Consensus 35 ~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (282)
T 3pgw_A 35 SQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPK 114 (282)
T ss_pred hccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhcc
Confidence 4799999999988889999999999999999999999999999999999999865432100000 0
Q ss_pred --------------------CCCCCC--------------------------------C----C----------------
Q 025583 66 --------------------YSSYSS--------------------------------G----G---------------- 73 (250)
Q Consensus 66 --------------------~~~~~~--------------------------------~----~---------------- 73 (250)
....+. . .
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (282)
T 3pgw_A 115 SQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQ 194 (282)
T ss_pred ccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccc
Confidence 000000 0 0
Q ss_pred ----CCCCCCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCccc-Cc
Q 025583 74 ----SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NA 148 (250)
Q Consensus 74 ----~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~-g~ 148 (250)
..........+|||+|||..+++++|+++|.+||.|..+.+..+..+ ||||+|.+.++|..|++.|||..+. |
T Consensus 195 ~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g-~afV~f~~~~~A~~A~~~l~g~~~~~g- 272 (282)
T 3pgw_A 195 MPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHD-IAFVEFDNEVQAGAARDALQGFKITQN- 272 (282)
T ss_pred cCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCc-EEEEEeCCHHHHHHHHHHcCCcEeCCC-
Confidence 00012234578999999999999999999999999999999876633 9999999999999999999999999 7
Q ss_pred ceeeEEEEEec
Q 025583 149 FSRSYVRVREY 159 (250)
Q Consensus 149 ~~~~~i~v~~~ 159 (250)
..|.|...
T Consensus 273 ---~~l~v~~a 280 (282)
T 3pgw_A 273 ---NAMKISFA 280 (282)
T ss_pred ---CEEEEEEe
Confidence 67777644
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.94 E-value=2.3e-25 Score=167.96 Aligned_cols=127 Identities=25% Similarity=0.381 Sum_probs=113.4
Q ss_pred CcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 2 MYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVS 78 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
+||+|.+|.|+. ++.++|||||+|.++++|+.|+..|||..|.|+.|.|.++.....
T Consensus 26 ~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~-------------------- 85 (168)
T 1b7f_A 26 AIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGE-------------------- 85 (168)
T ss_dssp TTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSS--------------------
T ss_pred hcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcc--------------------
Confidence 699999999953 677899999999999999999999999999999999999865432
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCC-C---cEEEEEecCHHHHHHHHHHccCCcccCc
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-G---MTGIVDYTSYDDMKYAIRKLDRSEFRNA 148 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~---~~a~v~f~~~~~a~~a~~~l~g~~~~g~ 148 (250)
.....+|+|+|||..+++++|+++|.+||.|..+.+..+.. + ++|||+|.+.++|..|++.|||..+.|.
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 159 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGG 159 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCC
Confidence 23456999999999999999999999999999999988763 2 2999999999999999999999999873
No 7
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.94 E-value=1.5e-25 Score=173.25 Aligned_cols=142 Identities=15% Similarity=0.269 Sum_probs=114.9
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGV 77 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
.+||+|.+|.|+. ++.++|||||+|.++++|++||. +++..|+|+.|.|.++........ ..
T Consensus 35 ~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~~~~~~~~~~~--------------~~ 99 (196)
T 1l3k_A 35 EQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRAVSREDSQR--------------PG 99 (196)
T ss_dssp GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEEECCC----------------------
T ss_pred HhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeeecccCcccccc--------------cc
Confidence 3799999999964 67789999999999999999995 599999999999999865432211 11
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
......+|||+|||..+++++|+++|..||.|..+.+..+...+ ||||+|.+.++|.+|+.. ++..+.| ..
T Consensus 100 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G----~~ 174 (196)
T 1l3k_A 100 AHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNG----HN 174 (196)
T ss_dssp ---CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETT----EE
T ss_pred cCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECC----EE
Confidence 22345799999999999999999999999999999999875332 999999999999999986 7999999 67
Q ss_pred EEEEecccC
Q 025583 154 VRVREYDSR 162 (250)
Q Consensus 154 i~v~~~~~~ 162 (250)
|.|......
T Consensus 175 i~v~~a~~k 183 (196)
T 1l3k_A 175 CEVRKALSK 183 (196)
T ss_dssp CEEEECC--
T ss_pred EEEEecCCh
Confidence 777765444
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.93 E-value=4.1e-25 Score=173.33 Aligned_cols=149 Identities=20% Similarity=0.305 Sum_probs=119.5
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGV 77 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
.+||+|.+|.|+. ++.++|||||+|.++++|++|+..|||..|.|+.|.|.++........... ....
T Consensus 50 ~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~---------~~~~ 120 (216)
T 2qfj_A 50 APFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIID---------QLAE 120 (216)
T ss_dssp GGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHH---------HHHH
T ss_pred HhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhh---------hhhc
Confidence 3799999999964 678999999999999999999999999999999999988754321100000 0000
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
......+|||+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|..|++.|||..|.| +.
T Consensus 121 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g----~~ 196 (216)
T 2qfj_A 121 EARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGG----QY 196 (216)
T ss_dssp HHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSS----SB
T ss_pred ccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCC----cE
Confidence 1234469999999999999999999999999999999987532 299999999999999999999999999 67
Q ss_pred EEEEecccC
Q 025583 154 VRVREYDSR 162 (250)
Q Consensus 154 i~v~~~~~~ 162 (250)
|.|......
T Consensus 197 i~V~~a~~~ 205 (216)
T 2qfj_A 197 LRVGKAVTP 205 (216)
T ss_dssp CEEEECSSC
T ss_pred EEEEEecCC
Confidence 777766544
No 9
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.93 E-value=3.8e-24 Score=165.60 Aligned_cols=150 Identities=19% Similarity=0.327 Sum_probs=117.4
Q ss_pred cEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCce
Q 025583 5 PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYR 84 (250)
Q Consensus 5 ~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (250)
.|.++.+. .++|||||+|.++++|++|+ .|||..|.|+.|.|.++..............................+
T Consensus 41 ~v~~~~~~---~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (198)
T 2yh0_A 41 PVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHK 116 (198)
T ss_dssp SEEEEEEE---TTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCE
T ss_pred ceEEeEec---CCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCE
Confidence 67777764 55899999999999999999 899999999999999987654322211111100001111122356689
Q ss_pred EEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEecc
Q 025583 85 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 160 (250)
Q Consensus 85 l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~ 160 (250)
|||+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|..|++.|||..+.| +.|.|....
T Consensus 117 l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~ 192 (198)
T 2yh0_A 117 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD----KKLLVQRAS 192 (198)
T ss_dssp EEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETT----EECEEEESC
T ss_pred EEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEECC
Confidence 999999999999999999999999999999988532 299999999999999999999999999 688887665
Q ss_pred cC
Q 025583 161 SR 162 (250)
Q Consensus 161 ~~ 162 (250)
..
T Consensus 193 ~~ 194 (198)
T 2yh0_A 193 VG 194 (198)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 10
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.92 E-value=2.9e-24 Score=170.25 Aligned_cols=151 Identities=17% Similarity=0.219 Sum_probs=117.1
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCC-----CCCCCCCCC----
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSM-----DRYSSYSSG---- 72 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~-----~~~~~~~~~---- 72 (250)
+||+|.+|.|.... +|||||+|.++++|++|++.|||..|.|+.|.|.++.......... .....+...
T Consensus 58 ~~G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (229)
T 2adc_A 58 VYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHR 135 (229)
T ss_dssp HHTCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCC
T ss_pred hCCCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccc
Confidence 69999999997643 8999999999999999999999999999999999987542211100 000000000
Q ss_pred ------CCCCCCCCCCceEEEeCCCCccCHHHHHHHhhccC-CeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcc
Q 025583 73 ------GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 145 (250)
Q Consensus 73 ------~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~ 145 (250)
........+..+|+|+|||..+++++|+++|.+|| .|..+.+..+..+ ||||+|.+.++|..|++.|||..+
T Consensus 136 ~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g-~afV~f~~~~~A~~Ai~~l~g~~~ 214 (229)
T 2adc_A 136 FKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK-MALIQMGSVEEAVQALIDLHNHDL 214 (229)
T ss_dssp CCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTT-CEEEEESSHHHHHHHHHHHTTCBS
T ss_pred cCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCc-EEEEEECCHHHHHHHHHHHCCCcc
Confidence 00011234568999999999999999999999999 9999998654333 899999999999999999999999
Q ss_pred c-CcceeeEEEEEec
Q 025583 146 R-NAFSRSYVRVREY 159 (250)
Q Consensus 146 ~-g~~~~~~i~v~~~ 159 (250)
. | +.|.|...
T Consensus 215 ~~g----~~l~v~~a 225 (229)
T 2adc_A 215 GEN----HHLRVSFS 225 (229)
T ss_dssp SSS----CBCEEEEC
T ss_pred CCC----CeEEEEEe
Confidence 9 7 56666654
No 11
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.92 E-value=3e-24 Score=175.48 Aligned_cols=141 Identities=18% Similarity=0.184 Sum_probs=122.7
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGV 77 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
.+||+|..|.|+. ++.++|||||+|.+.++|..|+..|||..|+|+.|.|.++...... +
T Consensus 117 ~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~-----------------~ 179 (284)
T 3smz_A 117 RPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLT-----------------P 179 (284)
T ss_dssp GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCC-----------------T
T ss_pred HhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCC-----------------c
Confidence 3699999999853 7788999999999999999999999999999999999998754332 1
Q ss_pred CCCCCceEEEeCCCCcc-CHHHHHHHhhccCCeeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 78 SRRSDYRVLVTGLPSSA-SWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~-~~~~l~~~f~~~g~v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
......+|+|+|||..+ ++++|+++|..||.|..+.+..+..+. +|||+|.+.++|..|+..|||..+.| +.
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 255 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGG----SH 255 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETT----EE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC----eE
Confidence 23456799999999995 999999999999999999998876553 99999999999999999999999999 68
Q ss_pred EEEEecccC
Q 025583 154 VRVREYDSR 162 (250)
Q Consensus 154 i~v~~~~~~ 162 (250)
|.|......
T Consensus 256 l~v~~a~~~ 264 (284)
T 3smz_A 256 LRVSFCAPG 264 (284)
T ss_dssp CEEEECCSS
T ss_pred EEEEEecCC
Confidence 888766544
No 12
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.92 E-value=2.5e-24 Score=163.25 Aligned_cols=127 Identities=14% Similarity=0.275 Sum_probs=109.6
Q ss_pred CcccEEEEEEec---CC--CCCcEEEEEECChHHHHHHHHhhCCCccC---CeEEEEEEccCCCCCCCCCCCCCCCCCCC
Q 025583 2 MYGPIVDIDLKI---PP--RPPGYAFLEFEDYRDAEDAIRGRDGYNFD---GYRLRVELAHGGRRHSSSMDRYSSYSSGG 73 (250)
Q Consensus 2 kfG~I~~v~i~~---~~--~~~g~aFV~f~~~e~A~~A~~~l~g~~~~---gr~i~V~~~~~~~~~~~~~~~~~~~~~~~ 73 (250)
+||+|.+|.|+. ++ .++|||||+|.++++|++|+..|||..+. +..|.|.++.....
T Consensus 26 ~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~--------------- 90 (175)
T 3nmr_A 26 QYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKN--------------- 90 (175)
T ss_dssp TTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCC---------------
T ss_pred hCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcccccccc---------------
Confidence 799999999964 33 67899999999999999999999998776 67888887754332
Q ss_pred CCCCCCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccC
Q 025583 74 SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRN 147 (250)
Q Consensus 74 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g 147 (250)
......+|+|+|||..+++++|+++|.+||.|..+.+..+..+. ||||+|.+.++|.+|++.|||..+.+
T Consensus 91 ----~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 163 (175)
T 3nmr_A 91 ----NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTME 163 (175)
T ss_dssp ----SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCT
T ss_pred ----ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccC
Confidence 12345699999999999999999999999999999999886644 99999999999999999999987764
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.92 E-value=4.6e-25 Score=167.62 Aligned_cols=135 Identities=15% Similarity=0.203 Sum_probs=110.0
Q ss_pred CcccEEEEEE--ecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 2 MYGPIVDIDL--KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSR 79 (250)
Q Consensus 2 kfG~I~~v~i--~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
+||.|..+.| ..++.++|||||+|.++++|++|+ +|||..|.|+.|.|.++...... ..
T Consensus 36 ~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~~~~~------------------~~ 96 (175)
T 1fje_B 36 ELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGRDSK------------------KV 96 (175)
T ss_dssp HHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCCCSSCS------------------TT
T ss_pred HhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCCCcccc------------------cc
Confidence 4666655333 236788999999999999999999 69999999999999998754321 23
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEec
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 159 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~ 159 (250)
....+|||+|||..+++++|+++|.+||.|..+ .......+||||+|.+.++|.+|+..|||..+.| +.|.|...
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~i~v~~a 171 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG----RSVSLYYT 171 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETT----EEEEEEEC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEec
Confidence 456799999999999999999999999998777 1111222399999999999999999999999999 67887765
Q ss_pred c
Q 025583 160 D 160 (250)
Q Consensus 160 ~ 160 (250)
.
T Consensus 172 ~ 172 (175)
T 1fje_B 172 G 172 (175)
T ss_dssp S
T ss_pred C
Confidence 4
No 14
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.92 E-value=2.7e-24 Score=166.59 Aligned_cols=151 Identities=17% Similarity=0.215 Sum_probs=116.8
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCC-----CCCCCCC-----
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMD-----RYSSYSS----- 71 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~-----~~~~~~~----- 71 (250)
+||+|.+|.|.... +|||||+|.++++|++|+..|||..|.|+.|.|.++........... ....+..
T Consensus 27 ~~G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r 104 (198)
T 1qm9_A 27 VYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHR 104 (198)
T ss_dssp TTCCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTS
T ss_pred hcCCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhh
Confidence 79999999997643 89999999999999999999999999999999999875432111100 0000000
Q ss_pred ---C--CCCCCCCCCCceEEEeCCCCccCHHHHHHHhhccC-CeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcc
Q 025583 72 ---G--GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 145 (250)
Q Consensus 72 ---~--~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~ 145 (250)
. ........+..+|+|+|||..+++++|+++|.+|| .|..+.+..+..+ +|||+|.+.++|..|+..|||..+
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g-~afV~f~~~~~A~~A~~~l~g~~~ 183 (198)
T 1qm9_A 105 FKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK-MALIQMGSVEEAVQALIDLHNHDL 183 (198)
T ss_dssp SSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSS-CEEEECSSHHHHHHHHHHHTSSCC
T ss_pred ccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCc-EEEEEeCCHHHHHHHHHHhcCCcc
Confidence 0 01112234578999999999999999999999999 9999998765433 899999999999999999999999
Q ss_pred c-CcceeeEEEEEec
Q 025583 146 R-NAFSRSYVRVREY 159 (250)
Q Consensus 146 ~-g~~~~~~i~v~~~ 159 (250)
. | +.|.|...
T Consensus 184 ~~g----~~l~v~~a 194 (198)
T 1qm9_A 184 GEN----HHLRVSFS 194 (198)
T ss_dssp SSC----CSCCEEEE
T ss_pred CCC----CeEEEEee
Confidence 9 7 45555443
No 15
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.92 E-value=8.9e-24 Score=159.92 Aligned_cols=126 Identities=19% Similarity=0.368 Sum_probs=109.7
Q ss_pred cEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCce
Q 025583 5 PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYR 84 (250)
Q Consensus 5 ~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (250)
.|.++.+. .++|||||+|.++++|++|+ .|||..|.|++|.|.++..... .....+
T Consensus 41 ~v~~~~~~---~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~--------------------~~~~~~ 96 (172)
T 2g4b_A 41 PVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQP--------------------LPGAHK 96 (172)
T ss_dssp SEEEEEEE---TTTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCCC--------------------CTTTTC
T ss_pred ceeeeEec---CCCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccCC--------------------CCCCCE
Confidence 78888875 44899999999999999999 8999999999999998754321 233569
Q ss_pred EEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEe
Q 025583 85 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 158 (250)
Q Consensus 85 l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 158 (250)
|+|+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|.+|++.|||..+.| +.|.|..
T Consensus 97 l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V~~ 170 (172)
T 2g4b_A 97 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD----KKLLVQR 170 (172)
T ss_dssp EEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETT----EECEEEE
T ss_pred EEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECC----eEEEEEe
Confidence 999999999999999999999999999999988532 299999999999999999999999999 6777654
No 16
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.91 E-value=1.9e-24 Score=162.84 Aligned_cols=133 Identities=17% Similarity=0.338 Sum_probs=113.5
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGV 77 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
.+||+|.+|.|+. ++.++|||||+|.++++|++|+.. +..|+|+.|.|.++.....
T Consensus 25 ~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~~~~------------------- 83 (167)
T 2cjk_A 25 GKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIPRDE------------------- 83 (167)
T ss_dssp TTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCCHHH-------------------
T ss_pred HhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccchhh-------------------
Confidence 4799999999964 688999999999999999999974 6789999999998754321
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
.....+|+|+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|.+|++ |++..+.| +.
T Consensus 84 -~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g----~~ 157 (167)
T 2cjk_A 84 -QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKD----RK 157 (167)
T ss_dssp -HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSS----SC
T ss_pred -ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCC----eE
Confidence 123458999999999999999999999999999999877532 299999999999999998 89999999 57
Q ss_pred EEEEecc
Q 025583 154 VRVREYD 160 (250)
Q Consensus 154 i~v~~~~ 160 (250)
|.|....
T Consensus 158 i~V~~a~ 164 (167)
T 2cjk_A 158 IEIKRAE 164 (167)
T ss_dssp EEEEECC
T ss_pred EEEeecC
Confidence 7776553
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.91 E-value=1.2e-23 Score=172.52 Aligned_cols=142 Identities=13% Similarity=0.224 Sum_probs=115.5
Q ss_pred Ccc-cEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 2 MYG-PIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVS 78 (250)
Q Consensus 2 kfG-~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
+|| +|.+|.|+. .+.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.+....... ...
T Consensus 140 ~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~-------------~~~ 206 (292)
T 2ghp_A 140 DINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT-------------DSA 206 (292)
T ss_dssp HTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC----------------------
T ss_pred HhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc-------------ccc
Confidence 689 999999965 4678999999999999999999999999999999999998755432210 122
Q ss_pred CCCCceEEEeCCCCc-cCHHHHHHHhhccCCeeEEEEEecCC--C---cEEEEEecCHHHHHHHHHHccCCcccCcceee
Q 025583 79 RRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRG--G---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 152 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~-~~~~~l~~~f~~~g~v~~~~~~~~~~--~---~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~ 152 (250)
.....+|+|+|||.. +++++|.++|..||.|..+.+..+.. + +||||+|.+.++|..|+ .|||..|.| +
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g----~ 281 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGN----R 281 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETT----E
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECC----c
Confidence 345679999999999 99999999999999999999987655 2 39999999999999999 999999999 6
Q ss_pred EEEEEeccc
Q 025583 153 YVRVREYDS 161 (250)
Q Consensus 153 ~i~v~~~~~ 161 (250)
.|.|.....
T Consensus 282 ~i~V~~a~~ 290 (292)
T 2ghp_A 282 EISVSLADK 290 (292)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEecC
Confidence 788776543
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.90 E-value=3.8e-23 Score=166.95 Aligned_cols=131 Identities=21% Similarity=0.254 Sum_probs=111.1
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRR 80 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (250)
.+||+|.+|.|.. .+|||||+|.++++|+.|+..|||..|.|+.|.|.++..
T Consensus 44 ~~~G~i~~v~i~~---~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~------------------------- 95 (261)
T 3sde_A 44 ERYGEPSEVFINR---DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH------------------------- 95 (261)
T ss_dssp GGGCCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC-------------------------
T ss_pred HhcCCEEEEEEeC---CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc-------------------------
Confidence 3799999999963 489999999999999999999999999999999999853
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEE
Q 025583 81 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 157 (250)
Q Consensus 81 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 157 (250)
..+|||+|||..+++++|+++|..||.|..+.+..+..+. ||||+|.+.++|..|+..||+..+......+.|.|.
T Consensus 96 -~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 96 -GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp -SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred -CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 2489999999999999999999999999999998885543 999999999999999999965544311112566666
Q ss_pred ecc
Q 025583 158 EYD 160 (250)
Q Consensus 158 ~~~ 160 (250)
...
T Consensus 175 ~~~ 177 (261)
T 3sde_A 175 PME 177 (261)
T ss_dssp ECC
T ss_pred ecc
Confidence 544
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.90 E-value=1.6e-22 Score=165.16 Aligned_cols=127 Identities=20% Similarity=0.185 Sum_probs=113.1
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRR 80 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (250)
.+|| |++|.| +.++|||||+|.++++|++|+..|||..|.|+.|.|.++.
T Consensus 44 ~~~G-i~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~-------------------------- 93 (284)
T 3smz_A 44 SDYE-LKYCFV---DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP-------------------------- 93 (284)
T ss_dssp TTSC-EEEEEE---ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC--------------------------
T ss_pred HHcC-CEEEEE---ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC--------------------------
Confidence 4799 999998 4668999999999999999999999999999999999853
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEEEE
Q 025583 81 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 156 (250)
Q Consensus 81 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 156 (250)
...+|||+|||..+++++|.++|..||.|..+.+..+...+ ||||+|.+.++|..|++.|+|..+.| ..|.|
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g----~~i~v 169 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGP----RTLYV 169 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC----cEEEE
Confidence 23499999999999999999999999999999998775432 99999999999999999999999999 67777
Q ss_pred Eeccc
Q 025583 157 REYDS 161 (250)
Q Consensus 157 ~~~~~ 161 (250)
.....
T Consensus 170 ~~a~~ 174 (284)
T 3smz_A 170 HWTDA 174 (284)
T ss_dssp EECCG
T ss_pred EECCC
Confidence 76543
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.89 E-value=2.2e-22 Score=165.04 Aligned_cols=129 Identities=19% Similarity=0.247 Sum_probs=111.0
Q ss_pred CCcccEEEEEEec-CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 1 MMYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSR 79 (250)
Q Consensus 1 ~kfG~I~~v~i~~-~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
.+||+|.+|.|+. ...++|||||+|.++++|++|+ +|||..|.|+.|.|.++.
T Consensus 63 ~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~------------------------- 116 (292)
T 2ghp_A 63 KHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAI-TKTHKVVGQNEIIVSHLT------------------------- 116 (292)
T ss_dssp GGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEECC-------------------------
T ss_pred HhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEEEECC-------------------------
Confidence 3699999999965 3335899999999999999999 599999999999999862
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccC-CeeEEEEEecCCC---cEEEEEecCHHHHHHHHHHccCCcccCcceeeEEE
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 155 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~---~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 155 (250)
..+|||+|||..+++++|.++|..|| .|..+.+..+..+ +||||+|.+.++|..|+..|+|..+.| ..|.
T Consensus 117 --~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 190 (292)
T 2ghp_A 117 --ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEG----YTLV 190 (292)
T ss_dssp --SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETT----EECE
T ss_pred --CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC----cEEE
Confidence 34999999999999999999999999 9999999876532 399999999999999999999999999 6777
Q ss_pred EEeccc
Q 025583 156 VREYDS 161 (250)
Q Consensus 156 v~~~~~ 161 (250)
|.....
T Consensus 191 v~~a~~ 196 (292)
T 2ghp_A 191 TKVSNP 196 (292)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 776543
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.89 E-value=5.2e-22 Score=148.36 Aligned_cols=144 Identities=17% Similarity=0.056 Sum_probs=105.2
Q ss_pred EEEec-CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEE
Q 025583 9 IDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLV 87 (250)
Q Consensus 9 v~i~~-~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 87 (250)
+.|.. ...++|||||+|.++++|++|+..+++....+..+.+.-......... ...............+|||
T Consensus 3 ~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~v 75 (158)
T 2kn4_A 3 YKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE-------GSHHHHHHMDVEGMTSLKV 75 (158)
T ss_dssp EEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC-------CCCCSSCCCCCCBCCEEEE
T ss_pred EEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc-------cccccccccCCCCCCEEEE
Confidence 44433 446899999999999999999999887544444444332211100000 0000011123355679999
Q ss_pred eCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEecccCC
Q 025583 88 TGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 163 (250)
Q Consensus 88 ~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~~r 163 (250)
+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|..|++.|||..+.| +.|.|......+
T Consensus 76 ~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~~ 151 (158)
T 2kn4_A 76 DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG----RELRVQMARYGR 151 (158)
T ss_dssp ESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS----SEEEEEEECCSS
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEECCCCC
Confidence 999999999999999999999999999877432 299999999999999999999999999 688888776543
No 22
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.87 E-value=1.1e-21 Score=145.23 Aligned_cols=139 Identities=19% Similarity=0.127 Sum_probs=109.7
Q ss_pred CCCCCcEEEEEECChHHHHHHHHhh-CCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCC
Q 025583 14 PPRPPGYAFLEFEDYRDAEDAIRGR-DGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPS 92 (250)
Q Consensus 14 ~~~~~g~aFV~f~~~e~A~~A~~~l-~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~ 92 (250)
....+|+++|+|.+.++|++|+.+| ||..|+| .|.|.++........... ...............+|||+|||.
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~V~nl~~ 83 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSH----HHHHHMHRDSCPLDCKVYVGNLGN 83 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSS----SCCCCSCSSSSTTSCEEEEESCCS
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccc----cccccccccCCCCCCEEEEeCCCC
Confidence 4567999999999999999999999 9999999 999998764321111000 000011123345567999999999
Q ss_pred ccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEecccC
Q 025583 93 SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 162 (250)
Q Consensus 93 ~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 162 (250)
.+++++|+++|.+||.|..+.+..+.. +||||+|.+.++|..|++.|||..+.| ..|.|......
T Consensus 84 ~~t~~~l~~~F~~~G~i~~v~i~~~~~-g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~ 148 (150)
T 2i2y_A 84 NGNKTELERAFGYYGPLRSVWVARNPP-GFAFVEFEDPRDAADAVRELDGRTLCG----CRVRVELSNGE 148 (150)
T ss_dssp CCSCHHHHHHHHHHSCEEEEEECSSSC-SEEEEEESSHHHHHHHHHHHSSSCSSS----SCCEEEECCCC
T ss_pred CCCHHHHHHHHHhhCCEEEEEEeeCCC-cEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEEcCCC
Confidence 999999999999999999999987733 399999999999999999999999999 57777765443
No 23
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.80 E-value=3.9e-19 Score=152.73 Aligned_cols=77 Identities=13% Similarity=0.131 Sum_probs=68.2
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeEEE
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 155 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 155 (250)
.+.++|||+|||..+++++|.++|.+||.|..|.|+.+..+ +||||+|.+.++|..||+.|||..|.| ..|.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~g----r~i~ 175 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDG----RRVL 175 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECC----EEEE
Confidence 34569999999999999999999999999999999877432 299999999999999999999999999 6777
Q ss_pred EEecc
Q 025583 156 VREYD 160 (250)
Q Consensus 156 v~~~~ 160 (250)
|....
T Consensus 176 V~~a~ 180 (437)
T 3pgw_S 176 VDVER 180 (437)
T ss_pred EEEeC
Confidence 77654
No 24
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.79 E-value=3e-19 Score=126.04 Aligned_cols=80 Identities=55% Similarity=1.010 Sum_probs=66.2
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcce-eeEEEEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS-RSYVRVR 157 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~-~~~i~v~ 157 (250)
....++|||+|||..+++++|+++|.+||+|..+.|..+ +||||+|.+.++|++||+.||+..|+|+.. ...|.|.
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 356789999999999999999999999999999999876 499999999999999999999999999642 2346666
Q ss_pred eccc
Q 025583 158 EYDS 161 (250)
Q Consensus 158 ~~~~ 161 (250)
....
T Consensus 90 ~~~~ 93 (115)
T 3beg_B 90 VDGP 93 (115)
T ss_dssp ECC-
T ss_pred cCCC
Confidence 5543
No 25
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-17 Score=115.73 Aligned_cols=82 Identities=55% Similarity=0.987 Sum_probs=71.8
Q ss_pred CCCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcc-eeeEEE
Q 025583 77 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF-SRSYVR 155 (250)
Q Consensus 77 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~-~~~~i~ 155 (250)
++....++|||+|||..+++++|+++|.+||.|..+.|..+ +||||+|.+.++|++||+.||+..|.|+. ....|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 44566789999999999999999999999999999999887 39999999999999999999999999843 235788
Q ss_pred EEeccc
Q 025583 156 VREYDS 161 (250)
Q Consensus 156 v~~~~~ 161 (250)
|.....
T Consensus 87 V~~a~~ 92 (108)
T 1x4c_A 87 VKVDGP 92 (108)
T ss_dssp EEESSC
T ss_pred EEeCCC
Confidence 877654
No 26
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.76 E-value=5.9e-18 Score=127.08 Aligned_cols=134 Identities=16% Similarity=0.138 Sum_probs=70.9
Q ss_pred EEECChHHHHHHHHhhCCCccC--CeEEEEEEccCCCCCCCCCCCCC--CCCCCCCCCCCCCCCceEEEeCCCCccCHHH
Q 025583 23 LEFEDYRDAEDAIRGRDGYNFD--GYRLRVELAHGGRRHSSSMDRYS--SYSSGGSRGVSRRSDYRVLVTGLPSSASWQD 98 (250)
Q Consensus 23 V~f~~~e~A~~A~~~l~g~~~~--gr~i~V~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~ 98 (250)
.+|++.++|+.|+..|++.... |+.+.+.......... ..... ...............++|||+|||..+++++
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~--~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~ 88 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHS--YERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDE 88 (165)
T ss_dssp ---------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccC--ccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHH
Confidence 8999999999999999997665 6666665532211000 00000 0000111122345567999999999999999
Q ss_pred HHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEecccC
Q 025583 99 LKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 162 (250)
Q Consensus 99 l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 162 (250)
|+++|.+||.|..+.|..+... +||||+|.+.++|..||+.|||..|.| ..|.|......
T Consensus 89 L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~a~~~ 152 (165)
T 1rk8_A 89 IQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG----QTIQVDWCFVK 152 (165)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEEEESEEC
T ss_pred HHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC----EEEEEEEecCC
Confidence 9999999999999999987543 299999999999999999999999999 67887766543
No 27
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.73 E-value=6.9e-18 Score=122.37 Aligned_cols=120 Identities=14% Similarity=0.049 Sum_probs=71.1
Q ss_pred CcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCccCHH
Q 025583 18 PGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQ 97 (250)
Q Consensus 18 ~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~ 97 (250)
.-++|++|++...|..|+..|+|....|+.. +.+. ...+......+|||+|||..++++
T Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~--------------------~~~~~~~~~~~l~V~nLp~~~te~ 62 (135)
T 2lea_A 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYG--------------------RPPPDVEGMTSLKVDNLTYRTSPD 62 (135)
T ss_dssp --------------------------------CCSC--------------------CSCSSGGGCCCEEEECCCSSCHHH
T ss_pred cccccccccCCCchhhhhhhccCCCCCCCCC-CCcC--------------------CCCCCCCCCCEEEEeCCCCCCCHH
Confidence 3478889999999999999999876555431 1111 111334456799999999999999
Q ss_pred HHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEecccC
Q 025583 98 DLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 162 (250)
Q Consensus 98 ~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 162 (250)
+|+++|.+||.|..+.+..+... +||||+|.+.++|..|++.||+..|.| ..|.|......
T Consensus 63 ~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g----~~l~V~~a~~~ 127 (135)
T 2lea_A 63 TLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG----RELRVQMARYG 127 (135)
T ss_dssp HHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSS----SCCEEEECCCC
T ss_pred HHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEECCCC
Confidence 99999999999999999876432 299999999999999999999999999 57777766544
No 28
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.70 E-value=6.1e-17 Score=112.91 Aligned_cols=80 Identities=33% Similarity=0.508 Sum_probs=69.7
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccC-CeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 157 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 157 (250)
....++|||+|||..+++++|+++|.+|| .|..+.+......+||||+|.+.++|++|++.|||..|.| +.|.|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G----r~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRG----SVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETT----EEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEE
Confidence 34567999999999999999999999999 8999988644334499999999999999999999999999 789988
Q ss_pred ecccC
Q 025583 158 EYDSR 162 (250)
Q Consensus 158 ~~~~~ 162 (250)
.....
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 77544
No 29
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.70 E-value=2e-16 Score=108.31 Aligned_cols=77 Identities=21% Similarity=0.336 Sum_probs=69.0
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEEE
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 155 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 155 (250)
..+++|||+|||..+++++|+++|.+||.|..+.+..+...+ ||||+|.+.++|..|++.|||..+.| +.|.
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g----r~l~ 92 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS----KTIK 92 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC----EEEE
Confidence 345689999999999999999999999999999999876533 99999999999999999999999999 6888
Q ss_pred EEecc
Q 025583 156 VREYD 160 (250)
Q Consensus 156 v~~~~ 160 (250)
|...+
T Consensus 93 V~~Ak 97 (99)
T 4fxv_A 93 VSYAR 97 (99)
T ss_dssp EEECC
T ss_pred EEEee
Confidence 87653
No 30
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.68 E-value=3.9e-17 Score=115.15 Aligned_cols=85 Identities=18% Similarity=0.299 Sum_probs=51.4
Q ss_pred CCcccEEEEEEec-CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 1 MMYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSR 79 (250)
Q Consensus 1 ~kfG~I~~v~i~~-~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (250)
++||+|++|.|+. .+.++|||||+|.++++|++||.+|||..|+|+.|.|.++........ ......
T Consensus 27 ~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~~------------~~~~~~ 94 (115)
T 4f25_A 27 SAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA------------ELGARA 94 (115)
T ss_dssp GGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC---------------------
T ss_pred hccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcccccc------------cccccc
Confidence 4799999999965 555789999999999999999999999999999999999875432211 011122
Q ss_pred CCCceEEEeCCCCccCHH
Q 025583 80 RSDYRVLVTGLPSSASWQ 97 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~ 97 (250)
.....|||+|||+.+|++
T Consensus 95 ~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp ------------------
T ss_pred CCCCceEeCCCCCCcccc
Confidence 334579999999998865
No 31
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.66 E-value=1.3e-15 Score=107.50 Aligned_cols=79 Identities=14% Similarity=0.250 Sum_probs=69.7
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC---cEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEE
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 156 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 156 (250)
....+|||+|||..+++++|+++|.+||.|..+.+..+..+ +||||+|.+.++|+.|++.|||..+.| ..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g----~~l~V 80 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHG----KAIKV 80 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSS----SBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC----EEEEE
Confidence 34569999999999999999999999999999999987633 299999999999999999999999999 57777
Q ss_pred EecccC
Q 025583 157 REYDSR 162 (250)
Q Consensus 157 ~~~~~~ 162 (250)
......
T Consensus 81 ~~a~~~ 86 (116)
T 2fy1_A 81 EQAKKP 86 (116)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 766544
No 32
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.65 E-value=1.5e-15 Score=105.92 Aligned_cols=78 Identities=17% Similarity=0.086 Sum_probs=70.1
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEEE
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 155 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 155 (250)
.+..+|||+|||..+++++|+++|.+||.|..+.|..+..++ ||||+|.+.++|.+|++.|||..++| +.|.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g----r~i~ 79 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG----NIIH 79 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECC----eEEE
Confidence 345699999999999999999999999999999999887633 99999999999999999999999999 6888
Q ss_pred EEeccc
Q 025583 156 VREYDS 161 (250)
Q Consensus 156 v~~~~~ 161 (250)
|.....
T Consensus 80 V~~a~~ 85 (110)
T 3s8s_A 80 AQLDIK 85 (110)
T ss_dssp EEECST
T ss_pred EEECCC
Confidence 876643
No 33
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.4e-15 Score=103.00 Aligned_cols=81 Identities=15% Similarity=0.188 Sum_probs=72.0
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 154 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 154 (250)
.....+|||+|||..+++++|+++|.+||.|..+.+..+...+ ||||+|.+.++|..|++.||+..|.| ..|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l 87 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH----LIL 87 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT----EEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC----cEE
Confidence 4567899999999999999999999999999999999875432 99999999999999999999999999 788
Q ss_pred EEEecccCC
Q 025583 155 RVREYDSRR 163 (250)
Q Consensus 155 ~v~~~~~~r 163 (250)
.|.......
T Consensus 88 ~v~~a~~~~ 96 (103)
T 2cq0_A 88 NVEWAKPST 96 (103)
T ss_dssp EEEESSCCC
T ss_pred EEEECCCCC
Confidence 888765543
No 34
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.65 E-value=1.1e-15 Score=107.61 Aligned_cols=76 Identities=21% Similarity=0.320 Sum_probs=68.5
Q ss_pred CceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc--EEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEec
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM--TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 159 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~--~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~ 159 (250)
..+|||+|||..+++++|+++|.+||.|..+.|..+..+. ||||+|.+.++|..|++.|++..|.| +.|.|...
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g----~~i~V~~a 80 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND----RKVFVGRF 80 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETT----EECEEEES
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEEC
Confidence 4589999999999999999999999999999998876543 99999999999999999999999999 68888765
Q ss_pred cc
Q 025583 160 DS 161 (250)
Q Consensus 160 ~~ 161 (250)
..
T Consensus 81 ~~ 82 (115)
T 4f25_A 81 KS 82 (115)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 35
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1.3e-15 Score=104.40 Aligned_cols=77 Identities=10% Similarity=0.089 Sum_probs=67.7
Q ss_pred CCCceEEEeCCCC-ccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCC--cccCcceeeEEEE
Q 025583 80 RSDYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRS--EFRNAFSRSYVRV 156 (250)
Q Consensus 80 ~~~~~l~v~~lp~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~--~~~g~~~~~~i~v 156 (250)
.+..+|||+|||. .+++++|+++|.+||.|..+.|+.+.. ||||+|++.++|..|++.|++. .|.| +.|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg--~aFVef~~~~~A~~Ai~~l~~~~~~~~G----r~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKIN--EAFIEMATTEDAQAAVDYYTTTPALVFG----KPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSS--CEEEEESSHHHHHHHHHHHHHSCCEETT----EECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCC--EEEEEECCHHHHHHHHHHHcCCCceECC----cEEEE
Confidence 4567999999999 999999999999999999999987654 9999999999999999999875 4888 78888
Q ss_pred EecccC
Q 025583 157 REYDSR 162 (250)
Q Consensus 157 ~~~~~~ 162 (250)
......
T Consensus 87 ~~a~~~ 92 (102)
T 1x4d_A 87 HLSQKY 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 776543
No 36
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.65 E-value=7.9e-16 Score=110.23 Aligned_cols=81 Identities=20% Similarity=0.299 Sum_probs=70.0
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
.....++|||+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|..|++.||+..|.| ..
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 93 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG----QP 93 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSS----SB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC----eE
Confidence 3455679999999999999999999999999999999877532 299999999999999999999999999 56
Q ss_pred EEEEecccC
Q 025583 154 VRVREYDSR 162 (250)
Q Consensus 154 i~v~~~~~~ 162 (250)
|.|......
T Consensus 94 l~v~~a~~~ 102 (126)
T 3ex7_B 94 ISVDWCFVR 102 (126)
T ss_dssp CEEEESEES
T ss_pred EEEEEecCC
Confidence 777665444
No 37
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.5e-15 Score=101.95 Aligned_cols=82 Identities=10% Similarity=0.080 Sum_probs=72.5
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC--cEEEEEecCHHHHHHHHHHccCCcccCcceeeEEE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 155 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 155 (250)
......+|||+|||..+++++|+++|.+||.|..+.+..+..+ +||||+|.+.++|..|++.||+..|.| ..|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 86 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILG----KEVK 86 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETT----EEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCC----CeEE
Confidence 3456679999999999999999999999999999999886543 399999999999999999999999999 7888
Q ss_pred EEecccCC
Q 025583 156 VREYDSRR 163 (250)
Q Consensus 156 v~~~~~~r 163 (250)
|.......
T Consensus 87 V~~a~~~~ 94 (103)
T 2cqi_A 87 VNWATTPS 94 (103)
T ss_dssp EEECCCTT
T ss_pred EEECCCCc
Confidence 88776544
No 38
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.9e-15 Score=101.80 Aligned_cols=83 Identities=19% Similarity=0.252 Sum_probs=72.7
Q ss_pred CCCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC--cEEEEEecCHHHHHHHHHHccCCcccCcceeeEE
Q 025583 77 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 154 (250)
Q Consensus 77 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 154 (250)
.......+|||+|||..+++++|+++|.+||.|..+.+..+..+ +||||+|.+.++|..|++.||+..|.| ..|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 85 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG----RKI 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETT----EEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC----EEE
Confidence 34556689999999999999999999999999999999877543 399999999999999999999999999 788
Q ss_pred EEEecccCC
Q 025583 155 RVREYDSRR 163 (250)
Q Consensus 155 ~v~~~~~~r 163 (250)
.|.......
T Consensus 86 ~v~~a~~~~ 94 (103)
T 2cq3_A 86 EVNNATARV 94 (103)
T ss_dssp EEEECCSSC
T ss_pred EEEEcccCC
Confidence 888765543
No 39
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.5e-15 Score=104.80 Aligned_cols=83 Identities=18% Similarity=0.127 Sum_probs=72.0
Q ss_pred CCCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceee
Q 025583 77 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 152 (250)
Q Consensus 77 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~ 152 (250)
+......+|||+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|..|++.||+..|.| .
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~ 83 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG----R 83 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT----B
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC----c
Confidence 34456689999999999999999999999999999999876542 299999999999999999999999999 6
Q ss_pred EEEEEecccCC
Q 025583 153 YVRVREYDSRR 163 (250)
Q Consensus 153 ~i~v~~~~~~r 163 (250)
.|.|.......
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2dnm_A 84 ELRVQVARYGR 94 (103)
T ss_dssp CCEEEECSSCC
T ss_pred EEEEEECCcCC
Confidence 78887765543
No 40
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.6e-15 Score=102.99 Aligned_cols=83 Identities=22% Similarity=0.275 Sum_probs=71.7
Q ss_pred CCCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCC-CcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEE
Q 025583 77 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 155 (250)
Q Consensus 77 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 155 (250)
+......+|||+|||..+++++|+++|.+||.|..+.+..+.. ..||||+|.+.++|..|++.||+..|.| ..|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 92 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG----YRLR 92 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECC----eEEE
Confidence 3445668999999999999999999999999999999876543 2399999999999999999999999999 7888
Q ss_pred EEecccCC
Q 025583 156 VREYDSRR 163 (250)
Q Consensus 156 v~~~~~~r 163 (250)
|......+
T Consensus 93 V~~a~~~~ 100 (109)
T 1x4a_A 93 VEFPRSGR 100 (109)
T ss_dssp EECCCCCC
T ss_pred EEEcccCC
Confidence 88765543
No 41
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.4e-15 Score=103.59 Aligned_cols=81 Identities=21% Similarity=0.307 Sum_probs=70.1
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
......+|||+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|..|++.||+..|.| ..
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 83 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG----RQ 83 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTS----CC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC----eE
Confidence 3456679999999999999999999999999999999876532 299999999999999999999999999 56
Q ss_pred EEEEecccC
Q 025583 154 VRVREYDSR 162 (250)
Q Consensus 154 i~v~~~~~~ 162 (250)
|.|......
T Consensus 84 l~v~~a~~~ 92 (102)
T 1x5s_A 84 IRVDQAGKS 92 (102)
T ss_dssp CEEEEEECC
T ss_pred EEEEECCCC
Confidence 777665444
No 42
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.4e-14 Score=101.85 Aligned_cols=81 Identities=21% Similarity=0.323 Sum_probs=71.7
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCcceeeEE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 154 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 154 (250)
......+|||+|||..+++++|+++|.+||.|..+.+..+..+. ||||+|.+.++|..|++.||+..|.| ..|
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 86 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD----RPM 86 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETT----EEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC----CEE
Confidence 34556799999999999999999999999999999999886643 99999999999999999999999999 688
Q ss_pred EEEecccC
Q 025583 155 RVREYDSR 162 (250)
Q Consensus 155 ~v~~~~~~ 162 (250)
.|......
T Consensus 87 ~v~~a~~~ 94 (114)
T 2do0_A 87 HVKMDERA 94 (114)
T ss_dssp EEEECSCC
T ss_pred EEEEcccC
Confidence 88766443
No 43
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=5.2e-15 Score=102.10 Aligned_cols=81 Identities=16% Similarity=0.240 Sum_probs=71.0
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCcceeeEE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 154 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 154 (250)
.....++|||+|||..+++++|+++|.+||.|..+.+..+ .+. ||||+|.+.++|..|++.||+..+.| ..|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l 85 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT----KPL 85 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS----SBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC----cEE
Confidence 3456779999999999999999999999999999999987 322 99999999999999999999999999 677
Q ss_pred EEEecccCC
Q 025583 155 RVREYDSRR 163 (250)
Q Consensus 155 ~v~~~~~~r 163 (250)
.|.......
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2d9p_A 86 YVALAQRKE 94 (103)
T ss_dssp EEEECSSCC
T ss_pred EEEEecccc
Confidence 777665543
No 44
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=4.6e-15 Score=101.61 Aligned_cols=81 Identities=16% Similarity=0.304 Sum_probs=70.1
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
......+|||+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|..|++ |++..+.| ..
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g----~~ 80 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMG----KK 80 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSS----CB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECC----eE
Confidence 3456679999999999999999999999999999999876532 299999999999999998 99999999 57
Q ss_pred EEEEecccCC
Q 025583 154 VRVREYDSRR 163 (250)
Q Consensus 154 i~v~~~~~~r 163 (250)
|.|.......
T Consensus 81 l~V~~a~~~~ 90 (99)
T 2dgs_A 81 VEVKRAEPRD 90 (99)
T ss_dssp CEEEECCCCC
T ss_pred EEEEECCCCc
Confidence 7777665543
No 45
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=8.4e-15 Score=100.47 Aligned_cols=80 Identities=20% Similarity=0.351 Sum_probs=71.3
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCcceeeEEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 155 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 155 (250)
.....+|||+|||..+++++|+++|.+||.|..+.+..+..+. ||||+|.+.++|..|++.||+..+.| ..|.
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 89 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKE----NIIK 89 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSS----CEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECC----EEEE
Confidence 4556799999999999999999999999999999999877433 99999999999999999999999999 6888
Q ss_pred EEecccC
Q 025583 156 VREYDSR 162 (250)
Q Consensus 156 v~~~~~~ 162 (250)
|......
T Consensus 90 v~~a~~~ 96 (100)
T 2do4_A 90 VAISNSG 96 (100)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 8776544
No 46
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=5.5e-15 Score=99.80 Aligned_cols=78 Identities=24% Similarity=0.353 Sum_probs=70.4
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 157 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 157 (250)
......+|||+|||..+++++|+++|.+||.|..+.+..+ ||||+|.+.++|..|++.||+..+.| ..|.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQG----KRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS----EEEEEESCHHHHHHHHHHHTTEEETT----EEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC----EEEEEECCHHHHHHHHHHhCCCeeCC----cEEEEE
Confidence 3456679999999999999999999999999999999865 99999999999999999999999999 788888
Q ss_pred ecccCC
Q 025583 158 EYDSRR 163 (250)
Q Consensus 158 ~~~~~r 163 (250)
......
T Consensus 78 ~a~~~~ 83 (92)
T 2dgt_A 78 LSTSRL 83 (92)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 775543
No 47
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.8e-15 Score=103.23 Aligned_cols=81 Identities=21% Similarity=0.195 Sum_probs=71.4
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 154 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 154 (250)
..+..+|||+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|..|++.||+..|.| ..|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l 84 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG----RTI 84 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETT----EEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----cEE
Confidence 355679999999999999999999999999999999876432 299999999999999999999999999 788
Q ss_pred EEEecccCC
Q 025583 155 RVREYDSRR 163 (250)
Q Consensus 155 ~v~~~~~~r 163 (250)
.|.......
T Consensus 85 ~V~~a~~~~ 93 (102)
T 2cqb_A 85 RVNLAKPMR 93 (102)
T ss_dssp EEEECCCCC
T ss_pred EEEeCCCCC
Confidence 888776554
No 48
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.7e-15 Score=99.94 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=70.2
Q ss_pred CCCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceee
Q 025583 77 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 152 (250)
Q Consensus 77 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~ 152 (250)
....+..+|||+|||..+++++|+++|.+||.|..+.+..+...+ ||||+|.+.++|..|++.||+..+.| .
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~ 85 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG----R 85 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT----E
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC----E
Confidence 345667899999999999999999999999999999998876532 99999999999999999999999999 6
Q ss_pred EEEEEec
Q 025583 153 YVRVREY 159 (250)
Q Consensus 153 ~i~v~~~ 159 (250)
.|.|...
T Consensus 86 ~l~v~~a 92 (95)
T 2cqc_A 86 RIRVSGP 92 (95)
T ss_dssp EEEEECC
T ss_pred EEEEEec
Confidence 8887754
No 49
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=4.9e-15 Score=100.45 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=69.0
Q ss_pred CCCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceee
Q 025583 77 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 152 (250)
Q Consensus 77 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~ 152 (250)
....+..+|||+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|..|++.||+..+.| .
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~ 86 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG----R 86 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT----E
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC----c
Confidence 34566779999999999999999999999999999999877542 299999999999999999999999999 6
Q ss_pred EEEEEe
Q 025583 153 YVRVRE 158 (250)
Q Consensus 153 ~i~v~~ 158 (250)
.|.|..
T Consensus 87 ~l~v~~ 92 (94)
T 2e5h_A 87 VIKASI 92 (94)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 777764
No 50
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.63 E-value=1.2e-14 Score=102.33 Aligned_cols=81 Identities=21% Similarity=0.254 Sum_probs=71.6
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 154 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 154 (250)
....++|||+|||..+++++|+++|.+||.|..+.+..+...+ ||||+|.+.++|..|++.||+..|.| ..|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 97 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM----KRL 97 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT----EEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC----EEE
Confidence 3456799999999999999999999999999999999876432 99999999999999999999999999 788
Q ss_pred EEEecccCC
Q 025583 155 RVREYDSRR 163 (250)
Q Consensus 155 ~v~~~~~~r 163 (250)
.|.......
T Consensus 98 ~V~~a~~~~ 106 (115)
T 2cpz_A 98 KVQLKRSKN 106 (115)
T ss_dssp EEECCCCSC
T ss_pred EEEEcCCCC
Confidence 888765543
No 51
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.63 E-value=3.2e-15 Score=98.07 Aligned_cols=73 Identities=14% Similarity=0.212 Sum_probs=66.0
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEec
Q 025583 81 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 159 (250)
Q Consensus 81 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~ 159 (250)
....|+|+||+..+++++|+++|.+||+|..+.+..... ||||+|.+.++|.+|++.||+..+.| +.|.|...
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kG--faFVey~~~~eA~~Ai~~Ln~~~l~g----r~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQG--IALCKYTTREEANKAQMALNNCVLAN----TTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTT--EEEEEESSHHHHHHHHHHHTTEEETT----EEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCc--EEEEEECCHHHHHHHHHHhcCCEECC----cEEEEEEC
Confidence 345899999999999999999999999999999977443 99999999999999999999999999 78888654
No 52
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.63 E-value=2.3e-14 Score=100.85 Aligned_cols=82 Identities=17% Similarity=0.240 Sum_probs=72.4
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
.....++|||+|||..+++++|+++|.+||.|..+.+..+...+ ||||+|.+.++|..|++.||+..|.| ..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 86 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG----RQ 86 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT----EE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----EE
Confidence 34567899999999999999999999999999999999875322 99999999999999999999999999 78
Q ss_pred EEEEecccCC
Q 025583 154 VRVREYDSRR 163 (250)
Q Consensus 154 i~v~~~~~~r 163 (250)
|.|.......
T Consensus 87 l~V~~a~~~~ 96 (115)
T 2dgo_A 87 IRTNWATRKP 96 (115)
T ss_dssp CEEEESSCCC
T ss_pred EEEEEccCCC
Confidence 8888775543
No 53
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.7e-15 Score=100.98 Aligned_cols=80 Identities=16% Similarity=0.179 Sum_probs=70.9
Q ss_pred CCCCceEEEeCCCCccCHHHHH----HHhhccCCeeEEEEEecCCC-cEEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~-~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
....++|||+|||..+++++|+ ++|.+||.|..+.+..+..+ +||||+|.+.++|..|++.|||..+.| +.
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g----r~ 81 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGS----KK 81 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETT----EE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECC----eE
Confidence 4456799999999999999999 99999999999999866443 399999999999999999999999999 78
Q ss_pred EEEEecccC
Q 025583 154 VRVREYDSR 162 (250)
Q Consensus 154 i~v~~~~~~ 162 (250)
|.|......
T Consensus 82 l~V~~a~~~ 90 (96)
T 2dgx_A 82 ILVSLATGA 90 (96)
T ss_dssp EEEEECCCS
T ss_pred EEEEEcCCC
Confidence 888877544
No 54
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=6.5e-15 Score=100.83 Aligned_cols=81 Identities=16% Similarity=0.129 Sum_probs=71.3
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 154 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 154 (250)
.....+|||+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|..|++.||+..+.| ..|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 80 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG----RML 80 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS----CEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECC----cEE
Confidence 345679999999999999999999999999999999877522 299999999999999999999999999 688
Q ss_pred EEEecccCC
Q 025583 155 RVREYDSRR 163 (250)
Q Consensus 155 ~v~~~~~~r 163 (250)
.|.......
T Consensus 81 ~V~~a~~~~ 89 (99)
T 1whw_A 81 HVLPSTIKK 89 (99)
T ss_dssp EEEECCCCS
T ss_pred EEEEcCCCc
Confidence 888776554
No 55
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=5.2e-15 Score=100.52 Aligned_cols=80 Identities=15% Similarity=0.184 Sum_probs=70.3
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeEEE
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 155 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 155 (250)
.+..+|||+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|..|++.||+..+.| ..|.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 78 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG----RPMR 78 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS----SCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC----cEEE
Confidence 34569999999999999999999999999999999887542 299999999999999999999999999 6788
Q ss_pred EEecccCC
Q 025583 156 VREYDSRR 163 (250)
Q Consensus 156 v~~~~~~r 163 (250)
|.......
T Consensus 79 V~~a~~~~ 86 (95)
T 2dnz_A 79 VGHVTERL 86 (95)
T ss_dssp EEESSCCC
T ss_pred EEEccccc
Confidence 87765543
No 56
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.1e-15 Score=103.47 Aligned_cols=77 Identities=6% Similarity=0.108 Sum_probs=66.9
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccC--CcccCcceeeEEEEE
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR--SEFRNAFSRSYVRVR 157 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g--~~~~g~~~~~~i~v~ 157 (250)
.+..+|||+|||..+++++|+++|.+||.|..+.+..+.. ||||+|++.++|..|++.|++ ..+.| +.|.|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kG--faFVeF~~~~~A~~Ai~~l~~~~~~l~G----r~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKN--QAFIEMNTEEAANTMVNYYTSVTPVLRG----QPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTT--EEEEEESSHHHHHHHHHHHTTSCCEETT----EECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCC--EEEEEECCHHHHHHHHHHhccCCceECC----EEEEEE
Confidence 4567999999999999999999999999999999987643 999999999999999998864 68899 677776
Q ss_pred ecccC
Q 025583 158 EYDSR 162 (250)
Q Consensus 158 ~~~~~ 162 (250)
.....
T Consensus 88 ~A~~~ 92 (105)
T 1sjq_A 88 FSNHK 92 (105)
T ss_dssp CCSSS
T ss_pred EcCCC
Confidence 65443
No 57
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=4.1e-15 Score=100.02 Aligned_cols=76 Identities=21% Similarity=0.332 Sum_probs=68.9
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEe
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 158 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 158 (250)
.....+|||+|||..+++++|+++|.+||.|..+.+..+ ||||+|.+.++|..|++.||+..+.| ..|.|..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD----YAFVHMEKEADAKAAIAQLNGKEVKG----KRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESCHHHHHHHHHHHTTCEETT----EECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC----EEEEEECCHHHHHHHHHHhCCCEECC----cEEEEEE
Confidence 355679999999999999999999999999999999865 89999999999999999999999999 7888887
Q ss_pred cccC
Q 025583 159 YDSR 162 (250)
Q Consensus 159 ~~~~ 162 (250)
....
T Consensus 78 a~~~ 81 (90)
T 2dnp_A 78 STKG 81 (90)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6554
No 58
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=1.2e-14 Score=100.34 Aligned_cols=81 Identities=19% Similarity=0.302 Sum_probs=70.6
Q ss_pred CCCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceee
Q 025583 77 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 152 (250)
Q Consensus 77 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~ 152 (250)
.+..+.++|||+|||..+++++|+++|.+|| |..+.+..+...+ ||||+|.+.++|..|+ .||+..|.| +
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~ 83 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD----R 83 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT----E
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC----e
Confidence 3455678999999999999999999999996 9999999886532 9999999999999999 899999999 7
Q ss_pred EEEEEecccCC
Q 025583 153 YVRVREYDSRR 163 (250)
Q Consensus 153 ~i~v~~~~~~r 163 (250)
.|.|.......
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2dng_A 84 SLRVDIAEGRK 94 (103)
T ss_dssp ECEEEECCCCC
T ss_pred EEEEEEecCCC
Confidence 88888775544
No 59
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.62 E-value=4e-15 Score=98.90 Aligned_cols=76 Identities=21% Similarity=0.207 Sum_probs=67.1
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 154 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 154 (250)
..+..+|||+|||..+++++|+++|.+||.|..+.+..+...+ ||||+|.+.++|..|++.|||..+.| ..|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 79 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG----RTI 79 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT----EEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC----cEE
Confidence 4566799999999999999999999999999999998764322 99999999999999999999999999 677
Q ss_pred EEEe
Q 025583 155 RVRE 158 (250)
Q Consensus 155 ~v~~ 158 (250)
.|..
T Consensus 80 ~v~~ 83 (85)
T 3mdf_A 80 RVNL 83 (85)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
No 60
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=7.5e-15 Score=101.47 Aligned_cols=82 Identities=17% Similarity=0.350 Sum_probs=71.1
Q ss_pred CCCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC-----cEEEEEecCHHHHHHHHHHccCCcccCccee
Q 025583 77 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG-----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 151 (250)
Q Consensus 77 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~ 151 (250)
.+..+.++|||+|||..+++++|+++|.+|| |..+.+..+... +||||+|.+.++|.+|+ .||+..|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g---- 83 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN---- 83 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT----
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC----
Confidence 3445668999999999999999999999999 999999877642 29999999999999999 999999999
Q ss_pred eEEEEEecccCCC
Q 025583 152 SYVRVREYDSRRS 164 (250)
Q Consensus 152 ~~i~v~~~~~~r~ 164 (250)
..|.|........
T Consensus 84 ~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 84 KRIRVDVADQAQD 96 (104)
T ss_dssp EECEEEECCCCCC
T ss_pred cEEEEEEccCCCC
Confidence 7888887765543
No 61
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.62 E-value=5.6e-15 Score=100.30 Aligned_cols=75 Identities=13% Similarity=0.161 Sum_probs=66.3
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCc--ccCcceeeEEEEE
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE--FRNAFSRSYVRVR 157 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~--~~g~~~~~~i~v~ 157 (250)
.+..+|||+|||..+++++|.++|.+||.|..+.+..... ||||+|++.++|..|++.|++.. +.| +.|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg--~AFVef~~~~~A~~Av~~ln~~~~~i~G----r~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKR--QALVEFEDVLGACNAVNYAADNQIYIAG----HPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTT--EEEEEESSHHHHHHHHHHHHHSCEEETT----EEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCC--EEEEEECCHHHHHHHHHHhcCCCceeCC----cEEEEE
Confidence 4567999999999999999999999999999999886543 99999999999999999999886 678 788887
Q ss_pred ecc
Q 025583 158 EYD 160 (250)
Q Consensus 158 ~~~ 160 (250)
...
T Consensus 93 ~S~ 95 (100)
T 3r27_A 93 YST 95 (100)
T ss_dssp ECS
T ss_pred ecc
Confidence 654
No 62
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.62 E-value=5.6e-15 Score=98.63 Aligned_cols=77 Identities=17% Similarity=0.205 Sum_probs=67.3
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEEE
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 155 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 155 (250)
.+..+|||+|||..+++++|+++|.+||.|..+.+..+...+ ||||+|.+.++|..|++.||+..+.| ..|.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 79 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG----RQIR 79 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----eEEE
Confidence 456799999999999999999999999999999998875322 99999999999999999999999999 6777
Q ss_pred EEecc
Q 025583 156 VREYD 160 (250)
Q Consensus 156 v~~~~ 160 (250)
|....
T Consensus 80 v~~a~ 84 (87)
T 3bs9_A 80 TNWAT 84 (87)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 76553
No 63
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=5.7e-15 Score=99.32 Aligned_cols=77 Identities=17% Similarity=0.315 Sum_probs=68.5
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEe
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 158 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 158 (250)
..+..+|||+|||..+++++|+++|.+||.|..+.+... ||||+|.+.++|..|++.||+..+.| ..|.|..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~g----~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN----YGFVHIEDKTAAEDAIRNLHHYKLHG----VNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEETT----EEEEEESSHHHHHHHHHHHTTCBCSS----CBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC----EEEEEECCHHHHHHHHHHhcCCccCC----cEEEEEE
Confidence 455679999999999999999999999999999998832 99999999999999999999999999 6788877
Q ss_pred cccCC
Q 025583 159 YDSRR 163 (250)
Q Consensus 159 ~~~~r 163 (250)
.....
T Consensus 77 a~~~~ 81 (90)
T 2dnq_A 77 SKNKS 81 (90)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 65543
No 64
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.61 E-value=1.4e-14 Score=99.97 Aligned_cols=77 Identities=9% Similarity=0.160 Sum_probs=69.1
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEe
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 158 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 158 (250)
..+..+|||+|||..+++++|+++|.+||.|..+.+..+ ||||+|.+.++|..|++.||+..|.| ..|.|..
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD----YAFIHFDERDGAVKAMEEMNGKDLEG----ENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESSHHHHHHHHHHHTTEEETT----EEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----EEEEEeCCHHHHHHHHHHHCCCccCC----CEEEEEE
Confidence 345679999999999999999999999999999988754 99999999999999999999999999 7888887
Q ss_pred cccCC
Q 025583 159 YDSRR 163 (250)
Q Consensus 159 ~~~~r 163 (250)
.....
T Consensus 80 a~~~~ 84 (103)
T 2dgu_A 80 AKPPD 84 (103)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 75543
No 65
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.2e-14 Score=101.70 Aligned_cols=82 Identities=10% Similarity=0.155 Sum_probs=71.5
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHcc------CCcccC
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLD------RSEFRN 147 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~------g~~~~g 147 (250)
......+|||+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|..|++.|| +..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 3456679999999999999999999999999999999877442 299999999999999999999 999999
Q ss_pred cceeeEEEEEecccCC
Q 025583 148 AFSRSYVRVREYDSRR 163 (250)
Q Consensus 148 ~~~~~~i~v~~~~~~r 163 (250)
..|.|.......
T Consensus 91 ----~~l~v~~a~~~~ 102 (111)
T 1x4h_A 91 ----RQLKVDLAVTRD 102 (111)
T ss_dssp ----CEEEEECCCCCC
T ss_pred ----EEEEEEECCCCc
Confidence 688888765543
No 66
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.61 E-value=7.6e-15 Score=101.96 Aligned_cols=79 Identities=18% Similarity=0.220 Sum_probs=70.1
Q ss_pred CCCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 77 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 77 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
++..+..+|||+|||..+++++|+++|.+||.|..+.+..+..+. ||||+|.+.++|.+|++.||+..+.| ..
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 99 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG----RP 99 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC----cE
Confidence 445667899999999999999999999999999999999886443 99999999999999999999999999 67
Q ss_pred EEEEec
Q 025583 154 VRVREY 159 (250)
Q Consensus 154 i~v~~~ 159 (250)
|.|...
T Consensus 100 l~V~~a 105 (107)
T 3ulh_A 100 MNIQLV 105 (107)
T ss_dssp CEEEEE
T ss_pred EEEEEe
Confidence 776543
No 67
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.61 E-value=6e-15 Score=100.18 Aligned_cols=79 Identities=22% Similarity=0.281 Sum_probs=69.9
Q ss_pred CCCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 77 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 77 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
.......+|||+|||..+++++|+++|.+||.|..+.+..+..+. ||||+|.+.++|..|++.||+..+.| ..
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 86 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYG----RP 86 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETT----EE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC----CE
Confidence 344567899999999999999999999999999999999876543 99999999999999999999999999 67
Q ss_pred EEEEec
Q 025583 154 VRVREY 159 (250)
Q Consensus 154 i~v~~~ 159 (250)
|.|...
T Consensus 87 l~V~~a 92 (95)
T 2ywk_A 87 INVSGP 92 (95)
T ss_dssp CEEECC
T ss_pred EEEEEc
Confidence 777654
No 68
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.61 E-value=6.7e-15 Score=102.07 Aligned_cols=82 Identities=18% Similarity=0.247 Sum_probs=70.5
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcc---cCcce
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEF---RNAFS 150 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~---~g~~~ 150 (250)
......+|||+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|..|++.||+..+ .|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g--- 85 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN--- 85 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS---
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC---
Confidence 3456679999999999999999999999999999999886542 2999999999999999999999987 77
Q ss_pred eeEEEEEecccCC
Q 025583 151 RSYVRVREYDSRR 163 (250)
Q Consensus 151 ~~~i~v~~~~~~r 163 (250)
..|.|.......
T Consensus 86 -~~l~v~~a~~~~ 97 (106)
T 2dgp_A 86 -RPIQVKPADSES 97 (106)
T ss_dssp -SCCEEEECCCCS
T ss_pred -ceEEEEECCccc
Confidence 577777665543
No 69
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1e-14 Score=101.28 Aligned_cols=83 Identities=18% Similarity=0.298 Sum_probs=71.1
Q ss_pred CCCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecC-C----CcEEEEEecCHHHHHHHHHHc-cCCcccCcce
Q 025583 77 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR-G----GMTGIVDYTSYDDMKYAIRKL-DRSEFRNAFS 150 (250)
Q Consensus 77 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~-~----~~~a~v~f~~~~~a~~a~~~l-~g~~~~g~~~ 150 (250)
+......+|||+|||..+++++|+++|.+||.|..+.+..+. . .+||||+|.+.++|..|++.| |+..|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g--- 86 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG--- 86 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS---
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC---
Confidence 345567899999999999999999999999999999998772 1 129999999999999999999 9999999
Q ss_pred eeEEEEEecccCC
Q 025583 151 RSYVRVREYDSRR 163 (250)
Q Consensus 151 ~~~i~v~~~~~~r 163 (250)
..|.|.......
T Consensus 87 -~~l~v~~a~~~~ 98 (107)
T 2cph_A 87 -RRLVLEWADSEV 98 (107)
T ss_dssp -CBCEEEECCCCC
T ss_pred -CEEEEEeCCCCC
Confidence 577777665543
No 70
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.61 E-value=2e-14 Score=99.49 Aligned_cols=83 Identities=22% Similarity=0.222 Sum_probs=69.8
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCcceeeEEEE
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 156 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 156 (250)
....+|||+|||..+++++|+++|.+||.|..+.+..+..+. ||||+|.+.++|..|++.||+..+.|.. ...|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~-~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGA-SSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTC-SSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCC-CccEEE
Confidence 456799999999999999999999999999999999886543 9999999999999999999999998710 135666
Q ss_pred EecccCC
Q 025583 157 REYDSRR 163 (250)
Q Consensus 157 ~~~~~~r 163 (250)
.......
T Consensus 92 ~~a~~~~ 98 (105)
T 2dnh_A 92 KFADTDK 98 (105)
T ss_dssp EESCSSC
T ss_pred EECccCc
Confidence 6655443
No 71
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.61 E-value=6e-15 Score=98.69 Aligned_cols=77 Identities=10% Similarity=0.163 Sum_probs=68.1
Q ss_pred CceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCC-----CcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEE
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 156 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~-----~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 156 (250)
.++|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|..|++.|||..+.| ..|.|
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v 79 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG----QEITA 79 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC----eEEEE
Confidence 46999999999999999999999999999999877652 2399999999999999999999999999 67887
Q ss_pred EecccC
Q 025583 157 REYDSR 162 (250)
Q Consensus 157 ~~~~~~ 162 (250)
......
T Consensus 80 ~~a~~~ 85 (88)
T 4a8x_A 80 TAVLAP 85 (88)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 766443
No 72
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.4e-14 Score=100.19 Aligned_cols=81 Identities=28% Similarity=0.353 Sum_probs=71.1
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
.....++|||+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|..|++.||+..|.| ..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 86 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG----KP 86 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS----CB
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC----eE
Confidence 3456679999999999999999999999999999999887532 299999999999999999999999999 67
Q ss_pred EEEEecccC
Q 025583 154 VRVREYDSR 162 (250)
Q Consensus 154 i~v~~~~~~ 162 (250)
|.|......
T Consensus 87 l~v~~a~~~ 95 (105)
T 1x5u_A 87 IRVNKASAH 95 (105)
T ss_dssp CEEEETTTT
T ss_pred EEEEECCCC
Confidence 888776544
No 73
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=9.9e-15 Score=99.70 Aligned_cols=79 Identities=16% Similarity=0.286 Sum_probs=69.7
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCC--C-----cEEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 81 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG--G-----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 81 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~--~-----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
+..+|||+|||..+++++|+++|.+||.|..+.+..+.. + +||||+|.+.++|..|++.||+..+.| ..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 79 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG----HK 79 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT----EE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC----eE
Confidence 456999999999999999999999999999999987654 2 299999999999999999999999999 68
Q ss_pred EEEEecccCC
Q 025583 154 VRVREYDSRR 163 (250)
Q Consensus 154 i~v~~~~~~r 163 (250)
|.|.......
T Consensus 80 l~V~~a~~~~ 89 (98)
T 2cpf_A 80 LEVRISERAT 89 (98)
T ss_dssp CEEECSSCSS
T ss_pred EEEEEccCCC
Confidence 8888765543
No 74
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.5e-14 Score=97.99 Aligned_cols=78 Identities=8% Similarity=0.117 Sum_probs=67.3
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHcc--CCcccCcceeeEEEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD--RSEFRNAFSRSYVRV 156 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~--g~~~~g~~~~~~i~v 156 (250)
..+..+|||+|||..+++++|+++|.+||.|..+.+..+. +||||+|++.++|..|++.|+ +..+.| +.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~k--g~aFVef~~~~~A~~Ai~~l~~~~~~~~G----r~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGK--NQAFLELATEEAAITMVNYYSAVTPHLRN----QPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTT--TEEEEEESSHHHHHHHHHHHHHSCCEETT----EECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCC--CEEEEEECCHHHHHHHHHHhccCCceECC----cEEEE
Confidence 4456799999999999999999999999999999888763 399999999999999999875 567898 78888
Q ss_pred EecccC
Q 025583 157 REYDSR 162 (250)
Q Consensus 157 ~~~~~~ 162 (250)
......
T Consensus 86 ~~a~~~ 91 (101)
T 2cq1_A 86 QYSNHK 91 (101)
T ss_dssp EECSCS
T ss_pred EEcCcc
Confidence 776544
No 75
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.1e-14 Score=101.44 Aligned_cols=79 Identities=15% Similarity=0.228 Sum_probs=70.5
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEe
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 158 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 158 (250)
....++|||+|||..+++++|+++|.+||.|..+.+..+.. ||||+|.+.++|..|++.|++..|.| ..|.|..
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g--~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG--YSFVRFSTHESAAHAIVSVNGTTIEG----HVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTT--EEEEEESSHHHHHHHHHHHTTCEETT----EECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCC--EEEEEECCHHHHHHHHHHcCCCEECC----cEEEEEe
Confidence 34567999999999999999999999999999999988743 99999999999999999999999999 6888887
Q ss_pred cccCC
Q 025583 159 YDSRR 163 (250)
Q Consensus 159 ~~~~r 163 (250)
.....
T Consensus 96 a~~~~ 100 (109)
T 1x4g_A 96 GKESP 100 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 65543
No 76
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=6.4e-15 Score=100.25 Aligned_cols=79 Identities=15% Similarity=0.205 Sum_probs=69.1
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhccCCeeEE-EEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeEEE
Q 025583 81 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 155 (250)
Q Consensus 81 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~-~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 155 (250)
+.++|||+|||..+++++|+++|.+||.|..+ .+..+... +||||+|.+.++|..|++.||+..+.| ..|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 79 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN----RPIT 79 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT----EECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC----EEEE
Confidence 45699999999999999999999999999888 88776332 299999999999999999999999999 7888
Q ss_pred EEecccCC
Q 025583 156 VREYDSRR 163 (250)
Q Consensus 156 v~~~~~~r 163 (250)
|.......
T Consensus 80 v~~a~~~~ 87 (96)
T 1x5t_A 80 VSYAFKKD 87 (96)
T ss_dssp EEESCCCC
T ss_pred EEEecccC
Confidence 88765543
No 77
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.60 E-value=1.4e-14 Score=95.81 Aligned_cols=75 Identities=17% Similarity=0.254 Sum_probs=67.2
Q ss_pred ceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEe
Q 025583 83 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 158 (250)
Q Consensus 83 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 158 (250)
++|||+|||..+++++|+++|.+||.|..+.+..+...+ ||||+|.+.++|..|++.|||..+.| ..|.|..
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g----~~l~v~~ 77 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG----RPLRINW 77 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT----EECEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCC----cEEEEEe
Confidence 589999999999999999999999999999998875432 99999999999999999999999999 6788776
Q ss_pred ccc
Q 025583 159 YDS 161 (250)
Q Consensus 159 ~~~ 161 (250)
...
T Consensus 78 a~~ 80 (83)
T 3md1_A 78 AAK 80 (83)
T ss_dssp CCC
T ss_pred cCc
Confidence 543
No 78
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.3e-14 Score=98.93 Aligned_cols=79 Identities=20% Similarity=0.206 Sum_probs=67.2
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEe
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 158 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 158 (250)
.....+|||+|||..+++++|+++|.+||.|. +.+..+...+||||+|.+.++|..|++.|||..+.| ..|.|..
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGT----DTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSS----SCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECC----cEEEEEE
Confidence 44567999999999999999999999999986 555555544599999999999999999999999999 5777776
Q ss_pred cccC
Q 025583 159 YDSR 162 (250)
Q Consensus 159 ~~~~ 162 (250)
....
T Consensus 91 a~~~ 94 (97)
T 2e5j_A 91 ARQQ 94 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6443
No 79
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.59 E-value=7.4e-15 Score=102.57 Aligned_cols=76 Identities=13% Similarity=0.183 Sum_probs=67.0
Q ss_pred CCCCceEEEeCCCCc-cCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEE
Q 025583 79 RRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 157 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 157 (250)
.....+|||+|||.. +++++|+++|.+||.|..+.+.. +||||+|.+.++|..|++.|++..+.| ..|.|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~----g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHK----GYAFVQYSNERHARAAVLGENGRVLAG----QTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEET----TEEEEECSSSHHHHHHHHHHTTCEETT----EECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEeC----CEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEE
Confidence 344579999999999 99999999999999999998832 299999999999999999999999999 688888
Q ss_pred ecccC
Q 025583 158 EYDSR 162 (250)
Q Consensus 158 ~~~~~ 162 (250)
.....
T Consensus 96 ~a~~~ 100 (110)
T 1wf1_A 96 MAGEP 100 (110)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 76544
No 80
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2.4e-14 Score=98.60 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=66.5
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCC--cccCcceeeEEEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRS--EFRNAFSRSYVRV 156 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~--~~~g~~~~~~i~v 156 (250)
..+..+|||+|||..+++++|+++|.+||.|..+.+..+.. ||||+|++.++|..|++.|++. .+.| +.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg--~aFVef~~~~~A~~Ai~~l~~~~~~i~G----r~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKR--QALVEFENIDSAKECVTFAADVPVYIAG----QQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTT--EEEEEESSHHHHHHHHHHHHHSCCBSSS----SBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCC--EEEEEECCHHHHHHHHHHhccCCceECC----EEEEE
Confidence 34567999999999999999999999999999998876533 9999999999999999998765 4888 57777
Q ss_pred EecccC
Q 025583 157 REYDSR 162 (250)
Q Consensus 157 ~~~~~~ 162 (250)
......
T Consensus 86 ~~a~~~ 91 (104)
T 1wex_A 86 NYSTSK 91 (104)
T ss_dssp EECSSS
T ss_pred EEccCc
Confidence 766543
No 81
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=9.2e-15 Score=99.88 Aligned_cols=80 Identities=14% Similarity=0.124 Sum_probs=67.7
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
.....++|||+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|+.|++.||+..|.| +.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~ 86 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS----RK 86 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT----EE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC----eE
Confidence 3456679999999999999999999999999876665554332 299999999999999999999999999 68
Q ss_pred EEEEeccc
Q 025583 154 VRVREYDS 161 (250)
Q Consensus 154 i~v~~~~~ 161 (250)
|.|.....
T Consensus 87 l~V~~a~~ 94 (98)
T 2cqp_A 87 VKLVLGSG 94 (98)
T ss_dssp CEEEESSC
T ss_pred EEEEEcCC
Confidence 88876543
No 82
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.59 E-value=1.3e-14 Score=97.89 Aligned_cols=80 Identities=21% Similarity=0.392 Sum_probs=68.8
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC--cEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 156 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 156 (250)
....++|||+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|..|++.||+..+.| ..|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g----~~l~v 80 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSG----REIDV 80 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTT----BCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----cEEEE
Confidence 455679999999999999999999999999999999875322 299999999999999999999999999 56776
Q ss_pred EecccC
Q 025583 157 REYDSR 162 (250)
Q Consensus 157 ~~~~~~ 162 (250)
......
T Consensus 81 ~~a~~~ 86 (92)
T 2dgv_A 81 RIDRNA 86 (92)
T ss_dssp EECSCC
T ss_pred EEcCCC
Confidence 665443
No 83
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.6e-14 Score=97.11 Aligned_cols=76 Identities=20% Similarity=0.177 Sum_probs=67.6
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhcc--CCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 156 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 156 (250)
.....+|||+|||..+++++|+++|.+| |.|..+.+... ||||+|.+.++|..|+..||+..+.| ..|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~g----~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD----YAFVHFSNREDAVEAMKALNGKVLDG----SPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECSS----EEEEEESSHHHHHHHHHHHSSEEETT----EEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeCC----eEEEEeCCHHHHHHHHHHhCCCEeCC----cEEEE
Confidence 4556799999999999999999999999 88988877643 99999999999999999999999999 78888
Q ss_pred EecccC
Q 025583 157 REYDSR 162 (250)
Q Consensus 157 ~~~~~~ 162 (250)
......
T Consensus 84 ~~a~~~ 89 (99)
T 2cpd_A 84 TLAKPV 89 (99)
T ss_dssp ECCCCC
T ss_pred EECCCC
Confidence 876544
No 84
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.8e-14 Score=98.59 Aligned_cols=84 Identities=8% Similarity=0.088 Sum_probs=71.5
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCee-EEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVC-FSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~-~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
.....+|||+|||..+++++|+++|.+||.|. .+.+..+... +||||+|.+.++|+.|++.||+..+.|+.....
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34567999999999999999999999999999 9999887643 299999999999999999999999999644444
Q ss_pred EEEEecccC
Q 025583 154 VRVREYDSR 162 (250)
Q Consensus 154 i~v~~~~~~ 162 (250)
|.|......
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 777766443
No 85
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=2.1e-14 Score=98.30 Aligned_cols=78 Identities=19% Similarity=0.274 Sum_probs=69.3
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEe
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 158 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 158 (250)
..+..+|||+|||..+++++|+++|.+||.|..+.+..+.. ||||+|.+.++|..|++.||+..+.| ..|.|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg--~afV~f~~~~~a~~a~~~l~g~~~~g----~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG--FGFIRLETRTLAEIAKVELDNMPLRG----KQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTT--EEEEECSSSHHHHHHHHHHTTCCBTT----BCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCC--EEEEEECCHHHHHHHHHHhCCCEeCC----ceEEEEE
Confidence 35567999999999999999999999999999999986643 99999999999999999999999999 6777776
Q ss_pred cccC
Q 025583 159 YDSR 162 (250)
Q Consensus 159 ~~~~ 162 (250)
....
T Consensus 86 a~~~ 89 (99)
T 2cpj_A 86 ACHS 89 (99)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 6554
No 86
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=2.1e-14 Score=97.93 Aligned_cols=77 Identities=21% Similarity=0.240 Sum_probs=68.0
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCccc--CcceeeEEEEE
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR--NAFSRSYVRVR 157 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~--g~~~~~~i~v~ 157 (250)
.+..+|||+|||..+++++|+++|.+||.|..+.+..+.. ||||+|.+.++|+.|++.||+..+. | ..|.|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g--~afV~f~~~~~A~~A~~~l~g~~~~~~g----~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDS--FAYIQYESLDAAQAACAKMRGFPLGGPD----RRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSC--CEEEEESSHHHHHHHHHHHTTCBCSSSS----CBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCC--EEEEEECCHHHHHHHHHHHCCCEeCCCC----cEEEEE
Confidence 4557999999999999999999999999999999887633 9999999999999999999999999 7 577777
Q ss_pred ecccC
Q 025583 158 EYDSR 162 (250)
Q Consensus 158 ~~~~~ 162 (250)
.....
T Consensus 89 ~a~~~ 93 (97)
T 1why_A 89 FAKSG 93 (97)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 66544
No 87
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.4e-14 Score=96.18 Aligned_cols=75 Identities=15% Similarity=0.251 Sum_probs=66.6
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHc-cCCcccCcceeeEEEE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL-DRSEFRNAFSRSYVRV 156 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l-~g~~~~g~~~~~~i~v 156 (250)
......+|||+|||..+++++|+++|.+||.|..+.+..+.. ||||+|.+.++|..|++.| ++..+.| ..|.|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg--~afV~f~~~~~A~~a~~~l~~~~~~~g----~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQ--CAFIQFATRQAAEVAAEKSFNKLIVNG----RRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGT--EEEEEESSHHHHHHHHHTTTTTCEETT----EECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCC--EEEEEECCHHHHHHHHHHhcCCeeECC----CEEEE
Confidence 345667999999999999999999999999999999987644 9999999999999999999 9999999 56666
Q ss_pred Ee
Q 025583 157 RE 158 (250)
Q Consensus 157 ~~ 158 (250)
..
T Consensus 82 ~~ 83 (85)
T 2ytc_A 82 KW 83 (85)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 88
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.3e-14 Score=101.94 Aligned_cols=78 Identities=6% Similarity=0.102 Sum_probs=67.8
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccC--CcccCcceeeEEEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR--SEFRNAFSRSYVRV 156 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g--~~~~g~~~~~~i~v 156 (250)
..+..+|||+|||..+++++|+++|.+||.|..+.+..+.. ||||+|++.++|..|++.|++ ..|.| +.|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG--~AFVeF~~~e~A~~Ai~~l~~~~~~l~G----r~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKN--QAFIEMNTEEAANTMVNYYTSVTPVLRG----QPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGT--EEEEECSCHHHHHHHHHHHHHHCCCBTT----BCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCC--EEEEEECCHHHHHHHHHHhccCCceECC----eEEEE
Confidence 34567999999999999999999999999999999987643 999999999999999999874 68898 67777
Q ss_pred EecccC
Q 025583 157 REYDSR 162 (250)
Q Consensus 157 ~~~~~~ 162 (250)
......
T Consensus 102 ~~a~~k 107 (119)
T 2ad9_A 102 QFSNHK 107 (119)
T ss_dssp EECSSS
T ss_pred EEccCC
Confidence 766443
No 89
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.9e-14 Score=100.95 Aligned_cols=81 Identities=22% Similarity=0.354 Sum_probs=70.3
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCee--------EEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCccc
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVC--------FSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFR 146 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~--------~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~ 146 (250)
.....+|||+|||..+++++|+++|.+||.|. .+.+..+... +||||+|.+.++|..|++.||+..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45667999999999999999999999999998 5888877432 29999999999999999999999999
Q ss_pred CcceeeEEEEEecccCC
Q 025583 147 NAFSRSYVRVREYDSRR 163 (250)
Q Consensus 147 g~~~~~~i~v~~~~~~r 163 (250)
| ..|.|.......
T Consensus 92 g----~~l~V~~a~~~~ 104 (113)
T 2cpe_A 92 G----SKLKVSLARKKP 104 (113)
T ss_dssp T----EECEEECSSCCC
T ss_pred C----CEEEEEECCCCC
Confidence 9 788888765543
No 90
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.58 E-value=6.6e-15 Score=106.35 Aligned_cols=78 Identities=24% Similarity=0.348 Sum_probs=69.0
Q ss_pred CCCCCCceEEEeCCCCccCHHHHHHHhhccCC---eeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCcce
Q 025583 77 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFS 150 (250)
Q Consensus 77 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~~~ 150 (250)
++....++|||+|||..+++++|+++|.+||. |..+.+..+..+. ||||+|.+.++|++|++ ||+..|.|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~g--- 114 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGH--- 114 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSS---
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECC---
Confidence 44566789999999999999999999999999 8889998876643 99999999999999999 99999999
Q ss_pred eeEEEEEec
Q 025583 151 RSYVRVREY 159 (250)
Q Consensus 151 ~~~i~v~~~ 159 (250)
+.|.|...
T Consensus 115 -r~i~V~~a 122 (136)
T 2hgl_A 115 -RYIEVFKS 122 (136)
T ss_dssp -SEEEEEEC
T ss_pred -EEEEEEEC
Confidence 67777654
No 91
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.58 E-value=1.5e-14 Score=98.40 Aligned_cols=77 Identities=12% Similarity=0.212 Sum_probs=68.7
Q ss_pred CceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEE
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 157 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 157 (250)
..+|||+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|..|++.|||..+.| ..|.|.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~ 77 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS----RFLKCG 77 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT----EECEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEE
Confidence 458999999999999999999999999999999877542 299999999999999999999999999 788887
Q ss_pred ecccC
Q 025583 158 EYDSR 162 (250)
Q Consensus 158 ~~~~~ 162 (250)
.....
T Consensus 78 ~a~~~ 82 (96)
T 2x1f_A 78 YSSNS 82 (96)
T ss_dssp ECSCS
T ss_pred EcCCC
Confidence 66543
No 92
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.58 E-value=1.6e-14 Score=98.83 Aligned_cols=78 Identities=21% Similarity=0.301 Sum_probs=68.0
Q ss_pred CCCCCCceEEEeCCCCccCHHHHHHHhhccCCeeE--------EEEEecCCCc----EEEEEecCHHHHHHHHHHccCCc
Q 025583 77 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSE 144 (250)
Q Consensus 77 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~ 144 (250)
++....++|||+|||..+++++|+++|.+||.|.. +.+..+...+ ||||+|.+.++|..|++.|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34566789999999999999999999999999998 8888875432 99999999999999999999999
Q ss_pred ccCcceeeEEEEEe
Q 025583 145 FRNAFSRSYVRVRE 158 (250)
Q Consensus 145 ~~g~~~~~~i~v~~ 158 (250)
+.| +.|.|..
T Consensus 88 ~~g----~~l~V~~ 97 (99)
T 2la6_A 88 FSG----NPIKVSF 97 (99)
T ss_dssp SSS----SBCEEEE
T ss_pred eCC----cEEEEEe
Confidence 999 4566553
No 93
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.58 E-value=4.1e-14 Score=121.56 Aligned_cols=59 Identities=37% Similarity=0.692 Sum_probs=53.4
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 59 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~ 59 (250)
.+||+|+.|.|+. ++.++|||||+|.++++|++||.+|||..|+|+.|.|.++.+....
T Consensus 124 ~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~~ 185 (437)
T 3pgw_S 124 EVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVK 185 (437)
T ss_pred HHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCCC
Confidence 3799999999964 7889999999999999999999999999999999999999865543
No 94
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.1e-14 Score=99.54 Aligned_cols=79 Identities=19% Similarity=0.288 Sum_probs=69.0
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 154 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 154 (250)
....++|||+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|..|++.|||..+.| ..|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 95 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG----QPI 95 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS----SBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC----cEE
Confidence 345679999999999999999999999999999999887653 299999999999999999999999999 566
Q ss_pred EEEeccc
Q 025583 155 RVREYDS 161 (250)
Q Consensus 155 ~v~~~~~ 161 (250)
.|.....
T Consensus 96 ~V~~a~~ 102 (106)
T 1p27_B 96 SVDWCFV 102 (106)
T ss_dssp EEEESEE
T ss_pred EEEeecC
Confidence 6665543
No 95
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=2.2e-14 Score=100.29 Aligned_cols=81 Identities=12% Similarity=0.117 Sum_probs=71.1
Q ss_pred CCCCceEEEeCCCCccCHHHHH---HHhhccCCeeEEEEEecCCC-------cEEEEEecCHHHHHHHHHHccCCcccCc
Q 025583 79 RRSDYRVLVTGLPSSASWQDLK---DHMRRAGDVCFSQVFRDRGG-------MTGIVDYTSYDDMKYAIRKLDRSEFRNA 148 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~---~~f~~~g~v~~~~~~~~~~~-------~~a~v~f~~~~~a~~a~~~l~g~~~~g~ 148 (250)
.....+|||+|||..+++++|. ++|.+||.|..+.+..+... +||||+|.+.++|+.|++.||+..|+|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g- 90 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG- 90 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT-
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC-
Confidence 4556799999999999999999 99999999999999877542 399999999999999999999999999
Q ss_pred ceeeEEEEEecccCC
Q 025583 149 FSRSYVRVREYDSRR 163 (250)
Q Consensus 149 ~~~~~i~v~~~~~~r 163 (250)
+.|.|.......
T Consensus 91 ---r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 ---RTLKASLGTTKY 102 (111)
T ss_dssp ---EEEEEESCCCCS
T ss_pred ---EEEEEEeccccc
Confidence 788888765443
No 96
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.3e-14 Score=99.01 Aligned_cols=79 Identities=18% Similarity=0.186 Sum_probs=69.0
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhc-cCCeeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCc-ccCcceeeE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRR-AGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSE-FRNAFSRSY 153 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~-~g~v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~-~~g~~~~~~ 153 (250)
..+.++|||+|||..+++++|+++|.+ ||.|..+.+..+..+. ||||+|.+.++|..|++.|++.. +.| ..
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g----~~ 81 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGS----KP 81 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS----SC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCC----Ee
Confidence 455679999999999999999999999 9999999999886443 99999999999999999999999 999 56
Q ss_pred EEEEeccc
Q 025583 154 VRVREYDS 161 (250)
Q Consensus 154 i~v~~~~~ 161 (250)
|.|.....
T Consensus 82 l~v~~a~~ 89 (104)
T 2dhg_A 82 VRLSVAIP 89 (104)
T ss_dssp CCCCBCCC
T ss_pred EEEEEccC
Confidence 66665543
No 97
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.57 E-value=5.4e-14 Score=102.31 Aligned_cols=82 Identities=20% Similarity=0.215 Sum_probs=72.3
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
......+|||+|||..+++++|+++|..||.|..+.+..+..++ ||||+|.+.++|.+|++.||+..|.| ..
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 113 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN----KR 113 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS----CE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----eE
Confidence 44556799999999999999999999999999999998876532 99999999999999999999999999 68
Q ss_pred EEEEecccCC
Q 025583 154 VRVREYDSRR 163 (250)
Q Consensus 154 i~v~~~~~~r 163 (250)
|.|.......
T Consensus 114 l~v~~a~~~~ 123 (139)
T 1u6f_A 114 LKVALAASGH 123 (139)
T ss_dssp EEEEESSCCC
T ss_pred EEEEECCCCC
Confidence 8888765543
No 98
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=4.3e-14 Score=95.15 Aligned_cols=80 Identities=18% Similarity=0.256 Sum_probs=69.7
Q ss_pred CCCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 77 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 77 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
++.....+|||+|||..+++++|+++|..| .|..+.+..+..+. ||||+|.+.++|..|++ ||+..+.| +.
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g----r~ 78 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGG----RY 78 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETT----EE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCC----cE
Confidence 344566799999999999999999999999 99999999885443 99999999999999999 99999999 68
Q ss_pred EEEEecccC
Q 025583 154 VRVREYDSR 162 (250)
Q Consensus 154 i~v~~~~~~ 162 (250)
|.|......
T Consensus 79 i~v~~a~~~ 87 (91)
T 2dgw_A 79 IEVFREKSG 87 (91)
T ss_dssp EEEEEESSC
T ss_pred EEEEECCcC
Confidence 888766443
No 99
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=1.7e-14 Score=99.14 Aligned_cols=76 Identities=22% Similarity=0.201 Sum_probs=67.6
Q ss_pred ceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEecccC
Q 025583 83 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 162 (250)
Q Consensus 83 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 162 (250)
++|||+|||..+++++|+++|.+||.|..+.+..+ ..+||||+|.+.++|..|++.|++..+.| ..|.|......
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICG----SRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSS----CCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECC----cEEEEEEccCC
Confidence 37999999999999999999999999999999887 33399999999999999999999999999 57888776554
Q ss_pred C
Q 025583 163 R 163 (250)
Q Consensus 163 r 163 (250)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 100
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.57 E-value=2.1e-14 Score=100.23 Aligned_cols=80 Identities=15% Similarity=0.185 Sum_probs=70.2
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 154 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 154 (250)
.....+|||+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|..|+..|||..+.| ..|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l 98 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG----QTI 98 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT----EEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC----cEE
Confidence 455679999999999999999999999999999999877532 299999999999999999999999999 678
Q ss_pred EEEecccC
Q 025583 155 RVREYDSR 162 (250)
Q Consensus 155 ~v~~~~~~ 162 (250)
.|......
T Consensus 99 ~V~~a~~~ 106 (110)
T 1oo0_B 99 QVDWCFVK 106 (110)
T ss_dssp EEEESEES
T ss_pred EEEEcccC
Confidence 88766544
No 101
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.57 E-value=9.3e-16 Score=111.18 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=64.6
Q ss_pred CcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCccCHH
Q 025583 18 PGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQ 97 (250)
Q Consensus 18 ~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~ 97 (250)
+|+||.+|..++-+..|+..+..+ +.|...--.. .............+|||+|||..++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~------------------g~~~~~~~~~~~~~lfV~nLp~~~te~ 61 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGS------------------GDSEFTVQSTTGHCVHMRGLPYKATEN 61 (139)
T ss_dssp ---------------------------------------------------------------CCCCEECCSCCTTCCHH
T ss_pred CCcccccccCccccchhcccchhc-cCCCCCCCCC------------------CCcccCCCCCCCCEEEEeCCCCCCCHH
Confidence 478999999988888777665544 2222210000 000111233456799999999999999
Q ss_pred HHHHHhhccCCeeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEeccc
Q 025583 98 DLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 161 (250)
Q Consensus 98 ~l~~~f~~~g~v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~ 161 (250)
+|+++|.+|| |+.+.|..+..+. ||||+|.+.++|++|| .||+..|.| +.|.|.....
T Consensus 62 dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~g----R~i~V~~a~~ 122 (139)
T 2hgn_A 62 DIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQH----RYIELFLNST 122 (139)
T ss_dssp HHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSS----CCCCCEECCC
T ss_pred HHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECC----EEEEEEECCC
Confidence 9999999999 7788888776543 9999999999999999 799999999 4666655443
No 102
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.57 E-value=1.8e-14 Score=100.17 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=68.7
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 157 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 157 (250)
......+|||+|||..+++++|+++|.+||.|..+.+. .+||||+|.+.++|..|++.|||..+.| ..|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFAN----QPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETT----EECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEE
Confidence 34566799999999999999999999999999999988 2399999999999999999999999999 788887
Q ss_pred ecccCC
Q 025583 158 EYDSRR 163 (250)
Q Consensus 158 ~~~~~r 163 (250)
......
T Consensus 99 ~a~~~~ 104 (108)
T 2jvo_A 99 YSKLPA 104 (108)
T ss_dssp SCSCCC
T ss_pred EecCCC
Confidence 665543
No 103
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=2.7e-14 Score=98.81 Aligned_cols=80 Identities=14% Similarity=0.219 Sum_probs=70.0
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
......+|||+|||..+++++|+++|.+||.|..+.+..+...+ ||||+|.+.++|..|++. ++..|.| ..
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g----~~ 86 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG----RN 86 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT----EE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC----EE
Confidence 45567899999999999999999999999999999999875432 999999999999999998 9999999 67
Q ss_pred EEEEecccC
Q 025583 154 VRVREYDSR 162 (250)
Q Consensus 154 i~v~~~~~~ 162 (250)
|.|......
T Consensus 87 l~V~~a~~~ 95 (105)
T 2dh8_A 87 IDPKPCTPR 95 (105)
T ss_dssp EBCCCSCCS
T ss_pred EEEEEccCC
Confidence 887765443
No 104
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.57 E-value=2.7e-14 Score=99.32 Aligned_cols=78 Identities=17% Similarity=0.187 Sum_probs=69.1
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 154 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 154 (250)
....++|||+|||..+++++|+++|.+||.|..+.+..+...+ ||||+|.+.++|..|++.|+|..+.| +.|
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g----~~l 98 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG----RPM 98 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS----SCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----EEE
Confidence 4556799999999999999999999999999999998875432 99999999999999999999999999 577
Q ss_pred EEEecc
Q 025583 155 RVREYD 160 (250)
Q Consensus 155 ~v~~~~ 160 (250)
.|....
T Consensus 99 ~V~~a~ 104 (108)
T 2jrs_A 99 KVGHVT 104 (108)
T ss_dssp EEECSC
T ss_pred EEEEcc
Confidence 776554
No 105
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.57 E-value=1.1e-14 Score=104.50 Aligned_cols=80 Identities=19% Similarity=0.204 Sum_probs=69.5
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
...+..+|||+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|..|++.||+..|.| ..
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g----~~ 117 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG----RR 117 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS----SC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----EE
Confidence 3455679999999999999999999999999999999876432 299999999999999999999999999 57
Q ss_pred EEEEeccc
Q 025583 154 VRVREYDS 161 (250)
Q Consensus 154 i~v~~~~~ 161 (250)
|.|.....
T Consensus 118 l~V~~a~~ 125 (129)
T 2kxn_B 118 IRVDFSIT 125 (129)
T ss_dssp CEESCCSS
T ss_pred EEEEEecC
Confidence 77765544
No 106
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.3e-14 Score=98.07 Aligned_cols=77 Identities=16% Similarity=0.159 Sum_probs=65.2
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCC-eeEEEEEecCCCcEEEEEecCHHHHHHHHHHccC-CcccCcceeeEEEEE
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR-SEFRNAFSRSYVRVR 157 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g-~~~~g~~~~~~i~v~ 157 (250)
....+|||+|||..+++++|+++|.+||. |..+.+. .. +||||+|.+.++|..|++.||+ ..+.| ..|.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-~~--g~afV~f~~~~~A~~A~~~l~g~~~~~g----~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-KS--GYAFVDYPDQNWAIRAIETLSGKVELHG----KIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-ET--TEEEECCSCHHHHHHHHHHHTTTCEETT----EECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-CC--CEEEEEECCHHHHHHHHHHccCCeeECC----EEEEEE
Confidence 45569999999999999999999999999 5555553 22 2999999999999999999999 99999 788888
Q ss_pred ecccCC
Q 025583 158 EYDSRR 163 (250)
Q Consensus 158 ~~~~~r 163 (250)
......
T Consensus 79 ~a~~~~ 84 (93)
T 2cqh_A 79 YSVSKK 84 (93)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 775543
No 107
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.56 E-value=4.9e-14 Score=104.63 Aligned_cols=79 Identities=15% Similarity=0.173 Sum_probs=70.9
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEEE
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 155 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 155 (250)
....+|||+|||..+++++|+++|.+||.|..+.|..+.... ||||+|.+.++|.+||+.||+..|.| ..|.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~ 112 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD----RIIR 112 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----eEEE
Confidence 456799999999999999999999999999999998886532 99999999999999999999999999 6888
Q ss_pred EEecccC
Q 025583 156 VREYDSR 162 (250)
Q Consensus 156 v~~~~~~ 162 (250)
|......
T Consensus 113 V~~a~~~ 119 (156)
T 1h2v_Z 113 TDWDAGF 119 (156)
T ss_dssp EEEESCC
T ss_pred EEECCCC
Confidence 8877543
No 108
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.56 E-value=5.3e-15 Score=99.62 Aligned_cols=75 Identities=15% Similarity=0.244 Sum_probs=64.6
Q ss_pred ceEEEeCCCCccCHHHHHHHhhccC-CeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHcc-CCcccCcceeeEEEE
Q 025583 83 YRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLD-RSEFRNAFSRSYVRV 156 (250)
Q Consensus 83 ~~l~v~~lp~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~-g~~~~g~~~~~~i~v 156 (250)
.+|||+|||..+++++|+++|.+|| .|..+.++.+..+ +||||+|.+.++|.+|++.|+ +..+.| +.|.|
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g----r~i~V 77 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG----QKVSM 77 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT----EEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC----EEEEE
Confidence 4899999999999999999999999 7999988876542 299999999999999999874 567888 78888
Q ss_pred Eeccc
Q 025583 157 REYDS 161 (250)
Q Consensus 157 ~~~~~ 161 (250)
....+
T Consensus 78 ~~a~~ 82 (91)
T 2lxi_A 78 HYSDP 82 (91)
T ss_dssp ECCCS
T ss_pred EEcCC
Confidence 76543
No 109
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.5e-14 Score=97.27 Aligned_cols=80 Identities=23% Similarity=0.287 Sum_probs=69.1
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEE-EEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 156 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~-~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 156 (250)
.....++|||+|||..+++++|+++|.+||.|..+ .+..+...+.|||+|.+.++|..|++.|||..+.| +.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLEN----FTLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSS----CBCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECC----cEEEE
Confidence 34456799999999999999999999999999999 47777665579999999999999999999999999 56777
Q ss_pred Eeccc
Q 025583 157 REYDS 161 (250)
Q Consensus 157 ~~~~~ 161 (250)
.....
T Consensus 87 ~~a~~ 91 (96)
T 2e44_A 87 AYIPD 91 (96)
T ss_dssp EECCC
T ss_pred EEcCc
Confidence 65543
No 110
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=2.7e-14 Score=98.06 Aligned_cols=79 Identities=16% Similarity=0.285 Sum_probs=65.9
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCC---CcEEEEEecCHHHHHHHHHHccCCcccCcceeeEE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 154 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 154 (250)
......+|||+|||..+++++|+++|.+||.| .+..+.. .+||||+|.+.++|..|++.||+..|.| ..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l 83 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEG----RAI 83 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT----EEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC----eEE
Confidence 34566799999999999999999999999987 3333322 2299999999999999999999999999 788
Q ss_pred EEEecccCC
Q 025583 155 RVREYDSRR 163 (250)
Q Consensus 155 ~v~~~~~~r 163 (250)
.|.......
T Consensus 84 ~v~~a~~~~ 92 (101)
T 2fc9_A 84 RLELQGPRG 92 (101)
T ss_dssp EEEECSSCC
T ss_pred EEEEcCCCC
Confidence 888775553
No 111
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.56 E-value=4.7e-15 Score=99.70 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=63.4
Q ss_pred ceEEEeCCCCccCHHHHHHHhhccC--CeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEEEE
Q 025583 83 YRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 156 (250)
Q Consensus 83 ~~l~v~~lp~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 156 (250)
.+|||+|||..+++++|+++|.+|| .|..+.+..+...+ ||||+|.+.++|.+|++.|||..+.| +.|.|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~g----r~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG----QNPVV 77 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSS----CCCEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCC----EEEEE
Confidence 4799999999999999999999999 99999998875432 99999999999999999999999999 57777
Q ss_pred Eeccc
Q 025583 157 REYDS 161 (250)
Q Consensus 157 ~~~~~ 161 (250)
.....
T Consensus 78 ~~~~~ 82 (90)
T 3p5t_L 78 TPSNK 82 (90)
T ss_dssp CCC--
T ss_pred EECCC
Confidence 65543
No 112
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6.3e-14 Score=98.73 Aligned_cols=80 Identities=18% Similarity=0.150 Sum_probs=69.8
Q ss_pred CCCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceee
Q 025583 77 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 152 (250)
Q Consensus 77 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~ 152 (250)
......++|||+|||..+++++|+++|.+||.|..+.+..+... .||||+|.+.++|.+|++.|++ .|.| .
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g----~ 86 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG----R 86 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT----E
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC----E
Confidence 34556789999999999999999999999999999999877542 2999999999999999999998 8998 7
Q ss_pred EEEEEeccc
Q 025583 153 YVRVREYDS 161 (250)
Q Consensus 153 ~i~v~~~~~ 161 (250)
.|.|.....
T Consensus 87 ~l~V~~a~~ 95 (116)
T 2cqd_A 87 KANVNLAYL 95 (116)
T ss_dssp ECEEEESTT
T ss_pred EEEEEEccc
Confidence 888887644
No 113
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=2.8e-14 Score=99.15 Aligned_cols=77 Identities=13% Similarity=0.139 Sum_probs=65.6
Q ss_pred CCCCceEEEeCCCCc-cCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccC--CcccCcceeeEEE
Q 025583 79 RRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR--SEFRNAFSRSYVR 155 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g--~~~~g~~~~~~i~ 155 (250)
..+..+|||+|||.. +++++|+++|.+||.|..+.+..... ||||+|++.++|..|++.|++ ..|.| +.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg--~aFVef~~~~~A~~Ai~~l~~~~~~l~G----r~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKS--QAFIEMETREDAMAMVDHCLKKALWFQG----RCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTT--EEEEECSSHHHHHHHHHHHHHSCCCSSS----SCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCHHHHHHHHHHhccCCceECC----EEEE
Confidence 455779999999998 99999999999999999999976543 999999999999999998865 45888 5677
Q ss_pred EEeccc
Q 025583 156 VREYDS 161 (250)
Q Consensus 156 v~~~~~ 161 (250)
|.....
T Consensus 96 V~~a~~ 101 (112)
T 1x4f_A 96 VDLSEK 101 (112)
T ss_dssp EEEECS
T ss_pred EEECcc
Confidence 766543
No 114
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.1e-14 Score=100.01 Aligned_cols=78 Identities=18% Similarity=0.245 Sum_probs=68.9
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC--cEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 156 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 156 (250)
.....+|||+|||..+++++|+++|.+||.|..+.+..+..+ +||||+|.+.++|..|++.|+|..+.| ..|.|
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V 101 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG----RKIEV 101 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECC----EEEEE
Confidence 455679999999999999999999999999999999876432 399999999999999999999999999 67877
Q ss_pred Eecc
Q 025583 157 REYD 160 (250)
Q Consensus 157 ~~~~ 160 (250)
....
T Consensus 102 ~~a~ 105 (109)
T 2err_A 102 NNAT 105 (109)
T ss_dssp EECC
T ss_pred EECC
Confidence 7654
No 115
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.55 E-value=8.5e-14 Score=99.26 Aligned_cols=81 Identities=19% Similarity=0.188 Sum_probs=71.0
Q ss_pred CCCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC---cEEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 77 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 77 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
+.....++|||+|||..+++++|+++|.+||.|..+.+..+..+ +||||+|.+.++|..|++.|||..+.| ..
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~ 105 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG----RP 105 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSS----CE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECC----cE
Confidence 44566789999999999999999999999999999999887633 299999999999999999999999999 67
Q ss_pred EEEEeccc
Q 025583 154 VRVREYDS 161 (250)
Q Consensus 154 i~v~~~~~ 161 (250)
|.|.....
T Consensus 106 l~V~~a~~ 113 (124)
T 2kt5_A 106 MDIQLVAS 113 (124)
T ss_dssp EEEEEECC
T ss_pred EEEEEeCC
Confidence 77776543
No 116
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.55 E-value=1.8e-14 Score=97.53 Aligned_cols=77 Identities=9% Similarity=0.094 Sum_probs=65.1
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCC--eeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCC----cccCcc
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRS----EFRNAF 149 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~--v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~----~~~g~~ 149 (250)
..-.+|||+|||+.+++++|+++|.+||. +..+.+..++.++ ||||+|.+.++|..|++.|||. .++|
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G-- 84 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG-- 84 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT--
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC--
Confidence 34458999999999999999999999995 6678887775432 9999999999999999999997 4888
Q ss_pred eeeEEEEEecc
Q 025583 150 SRSYVRVREYD 160 (250)
Q Consensus 150 ~~~~i~v~~~~ 160 (250)
+.|.|...+
T Consensus 85 --r~i~V~~Ak 93 (95)
T 2lkz_A 85 --KTIGVDFAK 93 (95)
T ss_dssp --EEEEEEECC
T ss_pred --EEEEEEEcc
Confidence 678877553
No 117
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.55 E-value=5.3e-14 Score=99.43 Aligned_cols=77 Identities=19% Similarity=0.301 Sum_probs=67.7
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
.....++|||+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|..|++.|||..+.| +.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 111 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT----KR 111 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETT----EE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECC----EE
Confidence 3456689999999999999999999999999999999876432 299999999999999999999999999 56
Q ss_pred EEEEe
Q 025583 154 VRVRE 158 (250)
Q Consensus 154 i~v~~ 158 (250)
|.|..
T Consensus 112 l~V~~ 116 (118)
T 2khc_A 112 LKVQL 116 (118)
T ss_dssp CCEEE
T ss_pred EEEEe
Confidence 66654
No 118
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=4.6e-14 Score=97.06 Aligned_cols=77 Identities=17% Similarity=0.229 Sum_probs=65.3
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCcceeeEE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 154 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 154 (250)
......+|||+|||..+++++|+++|.+||. +.+.|..+..+. ||||+|.+.++|++||+ +|+..|.| +.|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g----r~i 84 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQH----RYV 84 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSS----SCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECC----cEE
Confidence 3456679999999999999999999999994 588888877543 99999999999999995 79999999 466
Q ss_pred EEEecc
Q 025583 155 RVREYD 160 (250)
Q Consensus 155 ~v~~~~ 160 (250)
.|....
T Consensus 85 ~V~~~~ 90 (102)
T 1wez_A 85 ELFLNS 90 (102)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 666543
No 119
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=3e-14 Score=98.98 Aligned_cols=76 Identities=29% Similarity=0.363 Sum_probs=66.2
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCcceeeEEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 155 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 155 (250)
.....+|||+|||..+++++|+++|..| .|..+.|..+..+. ||||+|.+.++|.+|| .||+..|.| +.|.
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g----r~i~ 86 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQ----RYVE 86 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETT----EEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECC----eEEE
Confidence 3445799999999999999999999999 89999998776543 9999999999999999 699999999 6788
Q ss_pred EEecc
Q 025583 156 VREYD 160 (250)
Q Consensus 156 v~~~~ 160 (250)
|....
T Consensus 87 V~~a~ 91 (109)
T 2dnn_A 87 VSPAT 91 (109)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 86553
No 120
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.55 E-value=5.4e-14 Score=95.85 Aligned_cols=75 Identities=13% Similarity=0.158 Sum_probs=66.2
Q ss_pred CCCCCceEEEeCCCC-ccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEE
Q 025583 78 SRRSDYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 156 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 156 (250)
......+|||+|||. .+++++|+++|.+||.|..+.+.. +||||+|.+.++|..|++.|||..+.| ..|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~~----g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKN----AFGFIQFDNPQSVRDAIEXESQEMNFG----KKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEECS----SEEEEEESSHHHHHHHHHHHTTSEETT----EECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeC----CEEEEEECCHHHHHHHHHHcCCCEECC----EEEEE
Confidence 345677999999998 999999999999999999998852 299999999999999999999999999 67777
Q ss_pred Eecc
Q 025583 157 REYD 160 (250)
Q Consensus 157 ~~~~ 160 (250)
....
T Consensus 90 ~~a~ 93 (97)
T 2xnq_A 90 EVSS 93 (97)
T ss_dssp EECC
T ss_pred EecC
Confidence 7653
No 121
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.55 E-value=1.3e-14 Score=98.58 Aligned_cols=77 Identities=14% Similarity=0.145 Sum_probs=64.6
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 154 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 154 (250)
.++..+|||+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|.+|++.||+..|.| +.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----r~l 87 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS----RKV 87 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC----cEE
Confidence 344579999999999999999999999999887766655433 299999999999999999999999999 677
Q ss_pred EEEec
Q 025583 155 RVREY 159 (250)
Q Consensus 155 ~v~~~ 159 (250)
.|...
T Consensus 88 ~v~~a 92 (95)
T 2ek1_A 88 KLSGP 92 (95)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 77643
No 122
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1e-14 Score=102.00 Aligned_cols=75 Identities=20% Similarity=0.236 Sum_probs=65.6
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEec
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 159 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~ 159 (250)
...++|||+|||..+++++|+++|.+||.|..+.+..... ||||+|.+.++|..|++.|||..+.| +.|.|...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g--~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGI--TAIVEFLEPLEARKAFRHLAYSKFHH----VPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSS--CEEEEESCHHHHHHHHHHHTTCBSSS----SBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCC--EEEEEeCCHHHHHHHHHHhCCCEECC----eEEEEEEC
Confidence 3456999999999999999999999999999988875433 99999999999999999999999999 56666654
Q ss_pred c
Q 025583 160 D 160 (250)
Q Consensus 160 ~ 160 (250)
.
T Consensus 82 ~ 82 (111)
T 1whx_A 82 P 82 (111)
T ss_dssp E
T ss_pred C
Confidence 3
No 123
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.54 E-value=5.6e-14 Score=94.12 Aligned_cols=75 Identities=17% Similarity=0.306 Sum_probs=67.0
Q ss_pred CceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEE
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 157 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 157 (250)
..+|||+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|..|+ .||+..+.| ..|.|.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g----~~l~V~ 80 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG----RQIKVI 80 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT----EECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECC----cEEEEE
Confidence 358999999999999999999999999999999887532 29999999999999999 999999999 788887
Q ss_pred eccc
Q 025583 158 EYDS 161 (250)
Q Consensus 158 ~~~~ 161 (250)
..+.
T Consensus 81 ~a~~ 84 (89)
T 3ucg_A 81 PKRT 84 (89)
T ss_dssp ETTT
T ss_pred EccC
Confidence 6644
No 124
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.9e-14 Score=99.07 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=65.1
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC---cEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEE
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 156 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 156 (250)
....+|||+|||..+++++|+++|.+||.|..+.+..+..+ +||||+|.+.++|..|+. +++..+.|+ .|.|
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr----~l~V 83 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKET----DLLI 83 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTT----TCEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCE----EEEE
Confidence 44579999999999999999999999999999999987653 299999999999999999 999999994 5555
Q ss_pred Ee
Q 025583 157 RE 158 (250)
Q Consensus 157 ~~ 158 (250)
..
T Consensus 84 ~~ 85 (103)
T 1s79_A 84 LF 85 (103)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 125
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.54 E-value=4.3e-14 Score=99.87 Aligned_cols=77 Identities=27% Similarity=0.395 Sum_probs=68.3
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCC---eeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCccee
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 151 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~ 151 (250)
.....++|||+|||..+++++|+++|..||. |..+.+..+..+. ||||+|.+.++|.+||+ ||+..|.|
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g---- 87 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGH---- 87 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETT----
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECC----
Confidence 3456679999999999999999999999998 8899998876654 99999999999999999 99999999
Q ss_pred eEEEEEec
Q 025583 152 SYVRVREY 159 (250)
Q Consensus 152 ~~i~v~~~ 159 (250)
+.|.|...
T Consensus 88 r~i~V~~a 95 (118)
T 2db1_A 88 RYIEVFKS 95 (118)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEEC
Confidence 67887654
No 126
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=4.3e-14 Score=97.60 Aligned_cols=79 Identities=18% Similarity=0.205 Sum_probs=66.2
Q ss_pred CCCCCCceEEEeCCCCccCHHHHHHHhhccCCeeE-EEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCcceee
Q 025583 77 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 152 (250)
Q Consensus 77 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~ 152 (250)
++.....+|||+|||..+++++|+++|.+||.|.. +.|..+..+. ||||+|.+.++|.+||+. ++..+.| +
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~g----r 84 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGH----R 84 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSS----S
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCC----c
Confidence 34456789999999999999999999999999987 7777664432 999999999999999997 9999999 4
Q ss_pred EEEEEecc
Q 025583 153 YVRVREYD 160 (250)
Q Consensus 153 ~i~v~~~~ 160 (250)
.|.|....
T Consensus 85 ~i~v~~~~ 92 (104)
T 1wg5_A 85 YIEIFKSS 92 (104)
T ss_dssp CCEEEEEC
T ss_pred EEEEEECC
Confidence 66665543
No 127
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=4.6e-14 Score=99.25 Aligned_cols=81 Identities=7% Similarity=0.081 Sum_probs=68.0
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCe----eEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDV----CFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 154 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v----~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 154 (250)
..+..+|||+|||..+++++|+++|.+||.| ..+.+......+||||+|.+.++|..|++.||+..+.| ..|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l 97 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYG----KIL 97 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS----CBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC----cEE
Confidence 3456799999999999999999999999988 56666533333499999999999999999999999999 678
Q ss_pred EEEecccCC
Q 025583 155 RVREYDSRR 163 (250)
Q Consensus 155 ~v~~~~~~r 163 (250)
.|.......
T Consensus 98 ~v~~a~~~~ 106 (115)
T 2cpx_A 98 VIEFGKNKK 106 (115)
T ss_dssp EEEECCCCS
T ss_pred EEEEccCCC
Confidence 887765554
No 128
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.54 E-value=9.9e-14 Score=92.52 Aligned_cols=75 Identities=16% Similarity=0.239 Sum_probs=65.3
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 154 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 154 (250)
.....+|||+|||..+++++|+++|.+||.|..+.+..+...+ ||||+|.+.++|..|++ +++..+.| +.|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g----~~i 82 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDG----RVI 82 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETT----EEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECC----EEE
Confidence 4556799999999999999999999999999999998876532 99999999999999996 57888999 677
Q ss_pred EEEe
Q 025583 155 RVRE 158 (250)
Q Consensus 155 ~v~~ 158 (250)
.|..
T Consensus 83 ~v~~ 86 (87)
T 3s7r_A 83 DPKK 86 (87)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7653
No 129
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.54 E-value=5.2e-14 Score=104.26 Aligned_cols=76 Identities=20% Similarity=0.119 Sum_probs=67.4
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhccC--CeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEE
Q 025583 81 SDYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 154 (250)
Q Consensus 81 ~~~~l~v~~lp~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 154 (250)
...+|||+|||..+++++|+++|..|| .|..+.+..+...+ ||||+|.+.++|..||+.|||..|.| +.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~G----r~l 129 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNG----EKV 129 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETT----EEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----eEe
Confidence 457999999999999999999999999 99999999885433 99999999999999999999999999 688
Q ss_pred EEEecc
Q 025583 155 RVREYD 160 (250)
Q Consensus 155 ~v~~~~ 160 (250)
.|....
T Consensus 130 ~V~~a~ 135 (156)
T 3n9u_C 130 DVRPAT 135 (156)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 887553
No 130
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=8e-14 Score=94.41 Aligned_cols=73 Identities=19% Similarity=0.260 Sum_probs=61.7
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEec
Q 025583 81 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 159 (250)
Q Consensus 81 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~ 159 (250)
...+|||+|||..+++++|+++|.+||.|..+ +.....+.||||+|.+.++|..|++ |++..|.| ..|.|...
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g----~~l~V~~a 79 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGG----HRLRVRPR 79 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETT----EECCCBCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECC----EEEEEEEC
Confidence 44699999999999999999999999999987 3322222399999999999999999 99999999 67777644
No 131
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.53 E-value=2.4e-14 Score=97.47 Aligned_cols=75 Identities=15% Similarity=0.146 Sum_probs=64.1
Q ss_pred CCCCceEEEeCCCC-ccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEE
Q 025583 79 RRSDYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 157 (250)
Q Consensus 79 ~~~~~~l~v~~lp~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 157 (250)
..+..+|||+|||. .+++++|+++|.+||.|..+.+.. +||||+|.+.++|..|++.||+..+.|+ .|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~----g~afV~f~~~~~A~~A~~~l~g~~~~g~----~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKN----AFGFIQFDNPQSVRDAIECESQEMNFGK----KLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEET----TEEEEEESCHHHHHHHHHHHTCSSCBTT----TBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeC----CEEEEEECCHHHHHHHHHHcCCCeeCCc----EEEEE
Confidence 34567999999998 999999999999999999999863 2999999999999999999999999994 55555
Q ss_pred eccc
Q 025583 158 EYDS 161 (250)
Q Consensus 158 ~~~~ 161 (250)
....
T Consensus 79 ~a~~ 82 (96)
T 2kvi_A 79 VSSS 82 (96)
T ss_dssp EEEC
T ss_pred EcCc
Confidence 5433
No 132
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.53 E-value=2.8e-14 Score=97.97 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=65.3
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEec
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 159 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~ 159 (250)
...++|||+|||..+++++|+++|.+||.|..+.+..... ||||+|.+.++|..|+..|||..+.| ..|.|...
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g--~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKG--CCFIKYDTHEQAAVCIVALANFPFQG----RNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTT--EEEEECSSHHHHHHHHHHHTTCEETT----EECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCC--EEEEEECCHHHHHHHHHHhCCCeECC----eEEEEEec
Confidence 4457999999999999999999999999999999884433 99999999999999999999999999 56666543
No 133
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.7e-13 Score=92.37 Aligned_cols=77 Identities=14% Similarity=0.169 Sum_probs=66.6
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEe
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 158 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 158 (250)
....++|||+|| .+++++|+++|.+||.|..+.+.... +||||+|.+.++|..|++.||+..|.| ..|.|..
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPR--NCAFVTYEKMESADQAVAELNGTQVES----VQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTT--TEEEEEESSHHHHHHHHHHTTTEEETT----EEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCC--CEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEEE
Confidence 345679999996 89999999999999999999886333 399999999999999999999999999 7888887
Q ss_pred cccCC
Q 025583 159 YDSRR 163 (250)
Q Consensus 159 ~~~~r 163 (250)
.....
T Consensus 84 a~~~~ 88 (97)
T 1x5p_A 84 ARKQP 88 (97)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 65543
No 134
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.53 E-value=6.1e-14 Score=103.51 Aligned_cols=81 Identities=17% Similarity=0.177 Sum_probs=68.6
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEec
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 159 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~ 159 (250)
.....|||+||++.+++++|+++|.+||.|..+.+.....+.||||+|.+.++|+.|++.|||..|.|. .+.|.|...
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~--g~~L~V~~A 121 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNA--CCTLRIDFS 121 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSS--CSCEEEEEC
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCC--CcEEEEEEe
Confidence 445678999999999999999999999999999997665445999999999999999999999999652 257777766
Q ss_pred ccC
Q 025583 160 DSR 162 (250)
Q Consensus 160 ~~~ 162 (250)
+..
T Consensus 122 k~~ 124 (164)
T 1sjr_A 122 KLT 124 (164)
T ss_dssp SSS
T ss_pred cCC
Confidence 543
No 135
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.53 E-value=3.5e-14 Score=97.36 Aligned_cols=76 Identities=20% Similarity=0.190 Sum_probs=66.2
Q ss_pred CCceEEEeCCCC------ccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcce
Q 025583 81 SDYRVLVTGLPS------SASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFS 150 (250)
Q Consensus 81 ~~~~l~v~~lp~------~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~ 150 (250)
..++|||+|||. .+++++|+++|.+||.|..+.+..+..++ ||||+|.+.++|..|++.|||..+.|.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~-- 82 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK-- 82 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS--
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC--
Confidence 356999999999 99999999999999999999998876532 999999999999999999999999981
Q ss_pred eeEEEEEec
Q 025583 151 RSYVRVREY 159 (250)
Q Consensus 151 ~~~i~v~~~ 159 (250)
+.|.|...
T Consensus 83 -r~l~V~~a 90 (100)
T 3ns6_A 83 -HRLFLYTM 90 (100)
T ss_dssp -CBCEEEES
T ss_pred -eEEEEEEC
Confidence 35555543
No 136
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.53 E-value=9e-14 Score=101.19 Aligned_cols=77 Identities=22% Similarity=0.205 Sum_probs=67.9
Q ss_pred CCCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceee
Q 025583 77 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 152 (250)
Q Consensus 77 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~ 152 (250)
.......+|||+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|.+|++.||+..|.| .
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~ 133 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG----R 133 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT----E
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC----E
Confidence 34556789999999999999999999999999999999876432 299999999999999999999999999 6
Q ss_pred EEEEE
Q 025583 153 YVRVR 157 (250)
Q Consensus 153 ~i~v~ 157 (250)
.|.|.
T Consensus 134 ~l~v~ 138 (140)
T 2ku7_A 134 TIRVN 138 (140)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77765
No 137
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.53 E-value=6.3e-14 Score=98.59 Aligned_cols=79 Identities=20% Similarity=0.233 Sum_probs=68.6
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc-EEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM-TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 157 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~-~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 157 (250)
.....+|||+|||..+++++|.++|..||.|..+.+..+.... ||||+|.+.++|..|++.|||..+.| ..|.|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~ 80 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSN----RYLVVL 80 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSS----CBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEE
Confidence 3455799999999999999999999999999999998765433 99999999999999999999999999 567776
Q ss_pred eccc
Q 025583 158 EYDS 161 (250)
Q Consensus 158 ~~~~ 161 (250)
....
T Consensus 81 ~a~~ 84 (115)
T 3lqv_A 81 YYNA 84 (115)
T ss_dssp ECCH
T ss_pred EecC
Confidence 5543
No 138
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1e-14 Score=96.94 Aligned_cols=69 Identities=20% Similarity=0.270 Sum_probs=62.4
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCc
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNA 148 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~ 148 (250)
.+..+|||+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|..|++.|||..+.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQ 75 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeE
Confidence 34569999999999999999999999999999999877542 2999999999999999999999999983
No 139
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.53 E-value=8.2e-14 Score=99.34 Aligned_cols=76 Identities=17% Similarity=0.298 Sum_probs=67.3
Q ss_pred CceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEE
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 157 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 157 (250)
..+|||+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|..|+ .|||..|.| ..|.|.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~V~ 110 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRG----RTIKVL 110 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETT----EECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECC----eEEEEE
Confidence 469999999999999999999999999999999877432 29999999999999999 799999999 788888
Q ss_pred ecccC
Q 025583 158 EYDSR 162 (250)
Q Consensus 158 ~~~~~ 162 (250)
.....
T Consensus 111 ~a~~~ 115 (124)
T 2jwn_A 111 PKRTN 115 (124)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 76543
No 140
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.52 E-value=9.5e-15 Score=102.82 Aligned_cols=79 Identities=27% Similarity=0.382 Sum_probs=70.1
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRS 81 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (250)
+||.|.+|.|+.++.++|||||+|.+.++|+.|+..|||..|+|+.|.|.++......
T Consensus 31 ~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~---------------------- 88 (115)
T 3lqv_A 31 KYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRAF---------------------- 88 (115)
T ss_dssp TTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHHT----------------------
T ss_pred hcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChhh----------------------
Confidence 7999999999888888999999999999999999999999999999999998754321
Q ss_pred CceEEEeCCCCccCHHHHHHHhhccCC
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRRAGD 108 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~~g~ 108 (250)
.+++....+++|+++|.+||-
T Consensus 89 ------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 89 ------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp ------TTSCHHHHHHHHHHHHHHHCC
T ss_pred ------hhhhHhHhHHHHHHHHHHhCC
Confidence 456778889999999999984
No 141
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.52 E-value=1.7e-14 Score=98.67 Aligned_cols=55 Identities=24% Similarity=0.387 Sum_probs=50.8
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 55 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~ 55 (250)
++||+|.+|.|+. ++.++|||||+|.++++|++|+..|||..|+|++|.|.++++
T Consensus 41 ~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 41 SSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp HTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred HhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 3799999999964 788999999999999999999999999999999999999864
No 142
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=6.2e-14 Score=96.74 Aligned_cols=78 Identities=28% Similarity=0.358 Sum_probs=68.6
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEEEE
Q 025583 81 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 156 (250)
Q Consensus 81 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 156 (250)
...+|||+|||..+++++|+++|.+||.|..+.+..+...+ ||||+|.+.++|..|++.|||..+.| ..|.|
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v 82 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSG----RALRV 82 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSS----SCBEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC----cEEEE
Confidence 44689999999999999999999999999999998775432 99999999999999999999999999 57777
Q ss_pred EecccC
Q 025583 157 REYDSR 162 (250)
Q Consensus 157 ~~~~~~ 162 (250)
......
T Consensus 83 ~~a~~~ 88 (104)
T 1p1t_A 83 DNAASE 88 (104)
T ss_dssp EETTCT
T ss_pred EeCCCc
Confidence 765443
No 143
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.8e-13 Score=92.08 Aligned_cols=79 Identities=24% Similarity=0.349 Sum_probs=67.5
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
......+|||+|||..+++++|+++|.+||.|..+.+..+...+ ||||+|.+.++|..|+. ++..+.| ..
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g----~~ 84 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDG----RW 84 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETT----EE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCC----eE
Confidence 34556799999999999999999999999999999999875432 99999999999999998 4668888 78
Q ss_pred EEEEecccC
Q 025583 154 VRVREYDSR 162 (250)
Q Consensus 154 i~v~~~~~~ 162 (250)
|.|......
T Consensus 85 l~v~~a~~~ 93 (103)
T 2cqg_A 85 CDCKLPNSK 93 (103)
T ss_dssp EEEECCCTT
T ss_pred EEEEecCCC
Confidence 888766544
No 144
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.3e-13 Score=96.84 Aligned_cols=82 Identities=16% Similarity=0.266 Sum_probs=69.4
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCcc----ee
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAF----SR 151 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~~----~~ 151 (250)
....++|||+|||..+++++|+++|.+||.|..+.+..+..+. ||||+|.+.++|..|++.|||..+.+.. ..
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 4556799999999999999999999999999999999886433 9999999999999999999999996543 23
Q ss_pred eEEEEEecc
Q 025583 152 SYVRVREYD 160 (250)
Q Consensus 152 ~~i~v~~~~ 160 (250)
..|.|....
T Consensus 102 ~~l~v~~a~ 110 (114)
T 1x5o_A 102 EPLLCKFSG 110 (114)
T ss_dssp SCBEEEECC
T ss_pred CceeEEccC
Confidence 566666544
No 145
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=7.4e-14 Score=99.59 Aligned_cols=78 Identities=21% Similarity=0.313 Sum_probs=63.9
Q ss_pred CCCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEE-EEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCcceee
Q 025583 77 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 152 (250)
Q Consensus 77 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~-~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~ 152 (250)
.+....++|||+|||..+++++|+++|..||.|..+ .+..+..+. ||||+|.+.++|.+||+ ||+..|.| +
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g----r 94 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGN----R 94 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTT----S
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECC----c
Confidence 345566899999999999999999999999998763 333333332 99999999999999999 99999999 4
Q ss_pred EEEEEec
Q 025583 153 YVRVREY 159 (250)
Q Consensus 153 ~i~v~~~ 159 (250)
.|.|...
T Consensus 95 ~i~V~~a 101 (124)
T 1wel_A 95 FIQVHPI 101 (124)
T ss_dssp CBEEEEE
T ss_pred EEEEEEC
Confidence 6666543
No 146
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.51 E-value=2.6e-14 Score=93.80 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=47.3
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEcc
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 54 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~ 54 (250)
+||+|.+|+|.. ++|||||+|.++++|++|++.||+..|+|++|.|+++.
T Consensus 30 q~G~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 30 QHGPLVSFHPYL---NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp HHSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred hhCCEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 799999999975 69999999999999999999999999999999999983
No 147
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=7.3e-14 Score=98.11 Aligned_cols=77 Identities=18% Similarity=0.244 Sum_probs=68.1
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEE
Q 025583 81 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 156 (250)
Q Consensus 81 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 156 (250)
...+|||+|||..+++++|+++|..||.|..+.+..+... +||||+|.+.++|..|+ .||+..|.| ..|.|
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~V 98 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG----VPIIV 98 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETT----EEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCC----eEEEE
Confidence 3469999999999999999999999999999999876542 29999999999999999 999999999 78888
Q ss_pred EecccC
Q 025583 157 REYDSR 162 (250)
Q Consensus 157 ~~~~~~ 162 (250)
......
T Consensus 99 ~~a~~~ 104 (114)
T 2cq4_A 99 QASQAE 104 (114)
T ss_dssp EEHHHH
T ss_pred EecCCC
Confidence 766543
No 148
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.51 E-value=3.2e-13 Score=95.63 Aligned_cols=77 Identities=10% Similarity=0.047 Sum_probs=65.4
Q ss_pred CceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcE-EEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEecc
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMT-GIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 160 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~-a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~ 160 (250)
...|+|+||+..+++++|.++|.+||.|..+.|... . +| |||+|.+.++|..|++.|||..|.|. .+.|.|...+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~-Gf~aFVef~~~~~A~~A~~~LnG~~i~g~--~~~l~V~~Ak 100 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-N-GIQAMVEFESVLCAQKAKAALNGADIYAG--CCTLKIEYAR 100 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-S-SEEEEEEESSHHHHHHHHHHHTTCCCBTT--BSEEEEECCS
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-C-CCEEEEEECCHHHHHHHHHHhCCCEecCC--CeEEEEEEec
Confidence 345789999999999999999999999999998764 3 45 99999999999999999999999873 2477777654
Q ss_pred cC
Q 025583 161 SR 162 (250)
Q Consensus 161 ~~ 162 (250)
..
T Consensus 101 ~~ 102 (124)
T 2e5i_A 101 PT 102 (124)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 149
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.3e-13 Score=97.16 Aligned_cols=78 Identities=17% Similarity=0.247 Sum_probs=68.6
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEE
Q 025583 81 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 156 (250)
Q Consensus 81 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 156 (250)
...+|||+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|..|++. ++..|.| ..|.|
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g----~~l~V 100 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG----RVVEP 100 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETT----EEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECC----EEEEE
Confidence 3479999999999999999999999999999999887542 2999999999999999997 9999999 78888
Q ss_pred EecccCC
Q 025583 157 REYDSRR 163 (250)
Q Consensus 157 ~~~~~~r 163 (250)
.......
T Consensus 101 ~~a~~~~ 107 (116)
T 1x4b_A 101 KRAVARE 107 (116)
T ss_dssp ECCSSCC
T ss_pred EECCCCc
Confidence 8765543
No 150
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=8.6e-14 Score=97.75 Aligned_cols=77 Identities=17% Similarity=0.191 Sum_probs=66.9
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCe-eEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCcceeeEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDV-CFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 154 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v-~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 154 (250)
.....+|||+|||..+++++|+++|..||.| ..+.|..+..+. ||||+|.+.++|..||+. |+..|.| +.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~g----r~i 86 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNG----REA 86 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETT----EEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCC----eEE
Confidence 4456799999999999999999999999999 788888766432 999999999999999987 9999999 678
Q ss_pred EEEecc
Q 025583 155 RVREYD 160 (250)
Q Consensus 155 ~v~~~~ 160 (250)
.|....
T Consensus 87 ~v~~a~ 92 (114)
T 2cpy_A 87 FVHVVT 92 (114)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 877653
No 151
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=3.5e-13 Score=92.58 Aligned_cols=79 Identities=20% Similarity=0.292 Sum_probs=65.1
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
......+|||+|||..+++++|+++|..|+ .+.++.+... +||||+|.+.++|..|++.||+..|.| ..
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 83 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG----NK 83 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT----EE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC----eE
Confidence 345667999999999999999999999775 4455554322 299999999999999999999999999 68
Q ss_pred EEEEecccCC
Q 025583 154 VRVREYDSRR 163 (250)
Q Consensus 154 i~v~~~~~~r 163 (250)
|.|.......
T Consensus 84 l~V~~a~~~~ 93 (102)
T 2fc8_A 84 VTLDWAKPKG 93 (102)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEecCCC
Confidence 8888776554
No 152
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.50 E-value=2.4e-14 Score=94.20 Aligned_cols=66 Identities=12% Similarity=0.147 Sum_probs=58.4
Q ss_pred ceEEEeCCCCcc------CHHHHHHHhhccCCeeEEEEEecCC--CcEEEEEecCHHHHHHHHHHccCCcccCc
Q 025583 83 YRVLVTGLPSSA------SWQDLKDHMRRAGDVCFSQVFRDRG--GMTGIVDYTSYDDMKYAIRKLDRSEFRNA 148 (250)
Q Consensus 83 ~~l~v~~lp~~~------~~~~l~~~f~~~g~v~~~~~~~~~~--~~~a~v~f~~~~~a~~a~~~l~g~~~~g~ 148 (250)
++|||+|||..+ ++++|+++|.+||.|..+.+..... .+||||+|.+.++|..|++.|||..+.|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 589999999999 6799999999999999998873221 23999999999999999999999999994
No 153
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.50 E-value=3.5e-14 Score=99.01 Aligned_cols=55 Identities=16% Similarity=0.299 Sum_probs=51.1
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 55 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~ 55 (250)
++||+|++|.|+. +++++|||||+|.+.++|++|++.|||..|+|+.|.|+++..
T Consensus 28 ~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 28 RKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp TTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred HhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 4899999999964 688999999999999999999999999999999999999864
No 154
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=5.4e-14 Score=97.79 Aligned_cols=79 Identities=15% Similarity=0.141 Sum_probs=63.4
Q ss_pred CCCceEEE--eCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcc-cCcceeeEEEE
Q 025583 80 RSDYRVLV--TGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF-RNAFSRSYVRV 156 (250)
Q Consensus 80 ~~~~~l~v--~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~-~g~~~~~~i~v 156 (250)
.+..+||| +||+..+++++|+++|.+||.|..+.+..+. +||||+|.+.++|++|++.|||.++ ..-.....|.|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~r--gfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNK--PYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTC--SCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC--CEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 34568999 7799999999999999999999998876543 3999999999999999999999988 21000256666
Q ss_pred Eecc
Q 025583 157 REYD 160 (250)
Q Consensus 157 ~~~~ 160 (250)
....
T Consensus 101 ~~a~ 104 (114)
T 2cq2_A 101 NFVE 104 (114)
T ss_dssp EEES
T ss_pred Eecc
Confidence 6543
No 155
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=1.2e-13 Score=98.51 Aligned_cols=79 Identities=10% Similarity=0.126 Sum_probs=65.5
Q ss_pred CCCCceEEEeCCCCccCHHHHH----HHhhccCCeeEEEEEecC-CCcEEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRDR-GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~----~~f~~~g~v~~~~~~~~~-~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
..+..+|||+|||..+++++|+ ++|.+||.|..+.+..+. ..+||||+|.+.++|..|++.|||..|.| +.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g----r~ 101 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQG----NP 101 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT----SC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC----CE
Confidence 3446799999999999999876 699999999988776432 22399999999999999999999999999 57
Q ss_pred EEEEeccc
Q 025583 154 VRVREYDS 161 (250)
Q Consensus 154 i~v~~~~~ 161 (250)
|.|.....
T Consensus 102 l~V~~a~~ 109 (127)
T 2a3j_A 102 LVITFSET 109 (127)
T ss_dssp CEEEECCC
T ss_pred EEEEEccC
Confidence 77765543
No 156
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.50 E-value=1.5e-13 Score=95.71 Aligned_cols=79 Identities=19% Similarity=0.265 Sum_probs=66.5
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeEEE
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 155 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 155 (250)
....+|||+|||..+++++|+++|..||.|..+.+..+..+ +||||+|.+.++|..|++.+ +..+.| ..|.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g----~~l~ 97 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDS----KTID 97 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCC----EEEE
Confidence 45579999999999999999999999999999999877542 29999999999999999977 488998 7888
Q ss_pred EEecccCC
Q 025583 156 VREYDSRR 163 (250)
Q Consensus 156 v~~~~~~r 163 (250)
|.......
T Consensus 98 V~~a~~~~ 105 (109)
T 2rs2_A 98 PKVAFPRR 105 (109)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 87765443
No 157
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.50 E-value=2.5e-13 Score=96.64 Aligned_cols=80 Identities=18% Similarity=0.163 Sum_probs=67.9
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcE-EEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEe
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMT-GIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 158 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~-a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 158 (250)
.....|+|+||++.+++++|.++|.+||.|..+.+..... +| |||+|.+.++|..|++.|||..|.|. .+.|.|..
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~-gfqAFVef~~~~~A~~Ai~~LnG~~i~g~--~~~LrI~~ 102 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNN-QFQALLQYADPVSAQHAKLSLDGQNIYNA--CCTLRIDF 102 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETT-EEEEEEEESCHHHHHHHHHHHTTCEEETT--EEEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCC-CcEEEEEECCHHHHHHHHHHcCCCeecCC--CcEEEEEe
Confidence 4456788999999999999999999999999998876543 35 99999999999999999999999873 36777776
Q ss_pred cccC
Q 025583 159 YDSR 162 (250)
Q Consensus 159 ~~~~ 162 (250)
.+..
T Consensus 103 ak~~ 106 (130)
T 3zzy_A 103 SKLT 106 (130)
T ss_dssp CSCS
T ss_pred cCCC
Confidence 6443
No 158
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.49 E-value=2.2e-14 Score=102.37 Aligned_cols=55 Identities=24% Similarity=0.439 Sum_probs=52.2
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCC
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 56 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~ 56 (250)
+||+|++|.|..++.++|||||+|.+.++|+.|+..|||..|.|++|.|.++...
T Consensus 56 ~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~ 110 (127)
T 2a3j_A 56 SQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETP 110 (127)
T ss_dssp HHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCC
T ss_pred cCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCc
Confidence 7999999999888899999999999999999999999999999999999999754
No 159
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.48 E-value=1.7e-13 Score=94.82 Aligned_cols=77 Identities=14% Similarity=0.174 Sum_probs=65.6
Q ss_pred CCCceEEEeCCCCcc------CHHHHHHHhhccCCeeEEEEEecCC--CcEEEEEecCHHHHHHHHHHccCCcccCccee
Q 025583 80 RSDYRVLVTGLPSSA------SWQDLKDHMRRAGDVCFSQVFRDRG--GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 151 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~------~~~~l~~~f~~~g~v~~~~~~~~~~--~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~ 151 (250)
...++|||+|||..+ ++++|+++|.+||.|..+.+..... .+||||+|.+.++|..|+..|||..+.|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g---- 88 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK---- 88 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST----
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC----
Confidence 345799999999999 7899999999999999998873221 2399999999999999999999999999
Q ss_pred e-EEEEEecc
Q 025583 152 S-YVRVREYD 160 (250)
Q Consensus 152 ~-~i~v~~~~ 160 (250)
+ .|.|....
T Consensus 89 ~~~l~V~~a~ 98 (105)
T 2nlw_A 89 QHTFRVNLFT 98 (105)
T ss_dssp TCEEEEECSC
T ss_pred CceEEEEEcc
Confidence 5 77777554
No 160
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.48 E-value=4.9e-14 Score=91.30 Aligned_cols=69 Identities=22% Similarity=0.317 Sum_probs=60.9
Q ss_pred eEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEE
Q 025583 84 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 157 (250)
Q Consensus 84 ~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 157 (250)
+|||+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|+.|++ |++..+.| ..|.|.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g----~~l~v~ 73 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINN----KMVECK 73 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSS----CCCEEE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECC----EEEEEE
Confidence 4899999999999999999999999999999877532 299999999999999998 99999999 455554
No 161
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.48 E-value=1.4e-13 Score=91.67 Aligned_cols=71 Identities=21% Similarity=0.367 Sum_probs=63.2
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhcc----C-------CeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCc
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRA----G-------DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 148 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~ 148 (250)
....+|||+|||..+++++|+++|.+| | .|..+.+..+.. ||||+|.+.++|..|+ .||+..+.|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg--~afV~f~~~~~a~~A~-~l~g~~~~g- 79 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKN--FAFLEFRSVDETTQAM-AFDGIIFQG- 79 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSS--EEEEEESSHHHHHHHG-GGTTCEETT-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCc--EEEEEcCCHHHHHHHH-hcCCCEECC-
Confidence 345699999999999999999999999 8 898888876643 9999999999999999 999999999
Q ss_pred ceeeEEEEE
Q 025583 149 FSRSYVRVR 157 (250)
Q Consensus 149 ~~~~~i~v~ 157 (250)
+.|.|.
T Consensus 80 ---~~l~V~ 85 (87)
T 2hzc_A 80 ---QSLKIR 85 (87)
T ss_dssp ---EECEEE
T ss_pred ---eEEEEe
Confidence 566665
No 162
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.48 E-value=9.6e-14 Score=94.36 Aligned_cols=79 Identities=13% Similarity=0.158 Sum_probs=65.3
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEe
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 158 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 158 (250)
.....+|||+|||..+++++|+++|.+||.|..+ .......+||||+|.+.++|..|++.|+|..+.| ..|.|..
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG----RSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT----EEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEE
Confidence 3456799999999999999999999999988766 1111112299999999999999999999999999 6888887
Q ss_pred cccC
Q 025583 159 YDSR 162 (250)
Q Consensus 159 ~~~~ 162 (250)
....
T Consensus 88 a~~~ 91 (96)
T 1fjc_A 88 TGEK 91 (96)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 6443
No 163
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.48 E-value=2.1e-13 Score=92.88 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=67.7
Q ss_pred CCCCceEEEeCCCCccCHHHHH----HHhhccCCeeEEEEEecC-CCcEEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRDR-GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~----~~f~~~g~v~~~~~~~~~-~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
..+..+|||+|||..+++++|+ ++|.+||.|..+.+.... ..+||||+|.+.++|..|++.|||..+.| ..
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 80 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYD----KP 80 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETT----EE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECC----cE
Confidence 4556799999999999999999 999999999999887321 11299999999999999999999999999 68
Q ss_pred EEEEecccC
Q 025583 154 VRVREYDSR 162 (250)
Q Consensus 154 i~v~~~~~~ 162 (250)
|.|......
T Consensus 81 l~v~~a~~~ 89 (97)
T 1nu4_A 81 MRIQYAKTD 89 (97)
T ss_dssp CEEEECSSC
T ss_pred EEEEEccCC
Confidence 888766543
No 164
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.47 E-value=2.2e-13 Score=103.01 Aligned_cols=78 Identities=18% Similarity=0.195 Sum_probs=67.7
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC---cEEEEEecCHHHHHHHHHHccCCcccCcceeeEE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 154 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 154 (250)
.....++|||+|||..+++++|+++|.+||.|..+.+..+..+ +||||+|.+.++|..|++.||+..|.| ..|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G----r~l 159 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG----RPM 159 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSS----SBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECC----EEE
Confidence 3445689999999999999999999999999999999877533 299999999999999999999999999 456
Q ss_pred EEEec
Q 025583 155 RVREY 159 (250)
Q Consensus 155 ~v~~~ 159 (250)
.|...
T Consensus 160 ~V~~a 164 (177)
T 2f3j_A 160 DIQLV 164 (177)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 65543
No 165
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2.5e-13 Score=94.52 Aligned_cols=79 Identities=18% Similarity=0.273 Sum_probs=67.0
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCC-eeEEEEE-ecCC----CcEEEEEecCHHHHHHHHHHcc--CCcccCccee
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVF-RDRG----GMTGIVDYTSYDDMKYAIRKLD--RSEFRNAFSR 151 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~-v~~~~~~-~~~~----~~~a~v~f~~~~~a~~a~~~l~--g~~~~g~~~~ 151 (250)
...++|||+|||..+++++|+++|.+||. |..+.+. .+.. .+||||+|.+.++|..|++.|+ +..+.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g---- 81 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG---- 81 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT----
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC----
Confidence 45679999999999999999999999998 9999887 4433 2299999999999999999996 589999
Q ss_pred eEEEEEecccC
Q 025583 152 SYVRVREYDSR 162 (250)
Q Consensus 152 ~~i~v~~~~~~ 162 (250)
..|.|......
T Consensus 82 ~~l~V~~a~~~ 92 (109)
T 2dis_A 82 HQIAVDWAEPE 92 (109)
T ss_dssp BCCEEEESCSS
T ss_pred CeEEEEEcCCC
Confidence 57777766544
No 166
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.47 E-value=1.8e-13 Score=98.58 Aligned_cols=79 Identities=6% Similarity=0.129 Sum_probs=67.5
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeE--EEEEecCCC----cEEEEEecCHHHHHHHHHHccCC----cccCc
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--SQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRS----EFRNA 148 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~--~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~----~~~g~ 148 (250)
.....+|||+|||..+++++|+++|.+||.|.. +.|+.+... +||||+|.+. +|..|++.|||. .+.|
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g- 97 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG- 97 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC-
Confidence 345679999999999999999999999999976 888877632 2999999999 999999999999 9999
Q ss_pred ceeeEEEEEecccC
Q 025583 149 FSRSYVRVREYDSR 162 (250)
Q Consensus 149 ~~~~~i~v~~~~~~ 162 (250)
+.|.|......
T Consensus 98 ---r~l~V~~a~~~ 108 (131)
T 2m2b_A 98 ---KTINVEFAKGS 108 (131)
T ss_dssp ---CCCCCEECCCS
T ss_pred ---EEEEEEECCCC
Confidence 56777665443
No 167
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=3.8e-14 Score=97.31 Aligned_cols=78 Identities=42% Similarity=0.601 Sum_probs=60.9
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRS 81 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (250)
+||+|.+|.|+.. ++|||||+|.++++|++|+..|||..|+|+.|.|.++........... .......
T Consensus 23 ~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~~~~----------~~~~~~~ 90 (101)
T 2hvz_A 23 YYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDR----------PPARRKL 90 (101)
T ss_dssp HHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSCCCS----------CCCSCCC
T ss_pred hcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCcccCCC----------CCccccC
Confidence 6999999999765 799999999999999999999999999999999999987653322110 0011223
Q ss_pred CceEEEeCCC
Q 025583 82 DYRVLVTGLP 91 (250)
Q Consensus 82 ~~~l~v~~lp 91 (250)
...|||+||+
T Consensus 91 ~~~ifvg~L~ 100 (101)
T 2hvz_A 91 LEVLFNGPLE 100 (101)
T ss_dssp CSCCCSCCCC
T ss_pred CCceecCCCC
Confidence 4578999986
No 168
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.47 E-value=1e-13 Score=95.68 Aligned_cols=55 Identities=24% Similarity=0.268 Sum_probs=50.3
Q ss_pred CCcccEEEEEEec----CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccC
Q 025583 1 MMYGPIVDIDLKI----PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 55 (250)
Q Consensus 1 ~kfG~I~~v~i~~----~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~ 55 (250)
++||+|++|.|+. ++.++|||||+|.++++|++|+.+|||..|+|+.|.|.++..
T Consensus 35 ~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 35 EKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp GGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred HhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 4899999999965 257899999999999999999999999999999999999853
No 169
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=8.3e-14 Score=90.62 Aligned_cols=69 Identities=16% Similarity=0.263 Sum_probs=61.3
Q ss_pred eEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEE
Q 025583 84 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 157 (250)
Q Consensus 84 ~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 157 (250)
+|||+|||..+++++|+++|.+||.|..+.+..+..+ +||||+|.+.++|..|++.++ ..+.|+ .|.|.
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~----~l~v~ 74 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSK----TIDPK 74 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSC----CCEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCE----EEEEE
Confidence 7999999999999999999999999999999877542 299999999999999999999 999994 55554
No 170
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.47 E-value=1.5e-13 Score=108.30 Aligned_cols=75 Identities=17% Similarity=0.182 Sum_probs=66.4
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhccC--CeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEE
Q 025583 81 SDYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 154 (250)
Q Consensus 81 ~~~~l~v~~lp~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 154 (250)
..++|||+|||..+++++|+++|.+|| .|..|.|+.+...+ ||||+|.+.++|.+||+.||+..|.| +.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~G----r~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG----QNP 142 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTT----BCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECC----EEe
Confidence 456899999999999999999999999 99999999886433 99999999999999999999999999 577
Q ss_pred EEEec
Q 025583 155 RVREY 159 (250)
Q Consensus 155 ~v~~~ 159 (250)
.|...
T Consensus 143 ~V~~a 147 (229)
T 3q2s_C 143 VVTPV 147 (229)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 77654
No 171
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=3.2e-13 Score=89.45 Aligned_cols=72 Identities=15% Similarity=0.230 Sum_probs=60.2
Q ss_pred CCceEEEeCCCCccCHHH----HHHHhhccC-CeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEE
Q 025583 81 SDYRVLVTGLPSSASWQD----LKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 155 (250)
Q Consensus 81 ~~~~l~v~~lp~~~~~~~----l~~~f~~~g-~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 155 (250)
..+.|||.|||..+++++ |.++|.+|| .|..+. +++|||.|.+.++|..|++.|+|..+.| +.|.
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt------gG~AfV~F~~~esA~~A~~~l~G~~l~g----r~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT------GCSAILRFINQDSAERAQKRMENEDVFG----NRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC------TTCEEEEESSHHHHHHHHHHHTTCCSSS----SCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe------cCEEEEEECCHHHHHHHHHHhcCCccCC----ceEE
Confidence 344599999999999887 558999995 998882 2499999999999999999999999999 6777
Q ss_pred EEecccC
Q 025583 156 VREYDSR 162 (250)
Q Consensus 156 v~~~~~~ 162 (250)
|......
T Consensus 78 v~~A~~~ 84 (96)
T 2diu_A 78 VSFTPKN 84 (96)
T ss_dssp EESSCCS
T ss_pred EEecCCC
Confidence 7655433
No 172
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.46 E-value=2.2e-13 Score=91.06 Aligned_cols=74 Identities=22% Similarity=0.312 Sum_probs=64.5
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEecc
Q 025583 81 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 160 (250)
Q Consensus 81 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~ 160 (250)
...+|||+|||..+++++|+++|.+| .|..+.+.. ..+||||+|.+.++|..|++.|||..+.| +.|.|....
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~--~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDR--NKRTAFVTLLNGEQAQNAIQMFHQYSFRG----KDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEG--GGTEEEECCSCHHHHHHHHHHHTTEEETT----EEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeC--CCcEEEEEECCHHHHHHHHHHhCCCeECC----cEEEEEEcC
Confidence 34689999999999999999999999 999888852 22399999999999999999999999999 688887654
Q ss_pred c
Q 025583 161 S 161 (250)
Q Consensus 161 ~ 161 (250)
.
T Consensus 77 ~ 77 (88)
T 1wg1_A 77 T 77 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 173
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.46 E-value=6.4e-14 Score=96.03 Aligned_cols=77 Identities=18% Similarity=0.341 Sum_probs=63.5
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecC--C---CcEEEEEecCHHHHHHHHHHccCCcccCcceee
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR--G---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 152 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~--~---~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~ 152 (250)
.....++|||+|||..+++++|+++|..|| |..+.+..+. . .+||||+|.+.++|..|+ .|+|..+.| +
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g----~ 88 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN----R 88 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTT----B
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECC----e
Confidence 345667999999999999999999999999 9999998775 2 229999999999999999 899999999 5
Q ss_pred EEEEEecc
Q 025583 153 YVRVREYD 160 (250)
Q Consensus 153 ~i~v~~~~ 160 (250)
.|.|....
T Consensus 89 ~l~V~~a~ 96 (100)
T 2j76_E 89 RIRVDVAD 96 (100)
T ss_dssp CCCCEECC
T ss_pred EEEEEecc
Confidence 66665543
No 174
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.46 E-value=8.1e-14 Score=96.73 Aligned_cols=77 Identities=19% Similarity=0.269 Sum_probs=66.2
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCC---eeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCccee
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 151 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~ 151 (250)
.....++|||+|||..+++++|+++|..||. |..+.+..+..+. ||||+|.+.++|..||+ |++..+.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g---- 81 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQ---- 81 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSS----
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCC----
Confidence 3456679999999999999999999999988 8889988776533 99999999999999999 99999999
Q ss_pred eEEEEEec
Q 025583 152 SYVRVREY 159 (250)
Q Consensus 152 ~~i~v~~~ 159 (250)
+.|.|...
T Consensus 82 r~i~V~~a 89 (107)
T 2lmi_A 82 RYVEVYEI 89 (107)
T ss_dssp SCCCCEEC
T ss_pred eEEEEEEC
Confidence 45666543
No 175
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.7e-13 Score=95.42 Aligned_cols=58 Identities=62% Similarity=1.040 Sum_probs=53.7
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
.+||+|++|.|+.++.++|||||+|.+.++|++||+.||+..|+|+.|.|++++....
T Consensus 44 ~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 101 (109)
T 1x4a_A 44 YKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRG 101 (109)
T ss_dssp GGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCCC
T ss_pred HhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCCC
Confidence 3799999999988888899999999999999999999999999999999999987554
No 176
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.45 E-value=8.1e-14 Score=96.04 Aligned_cols=52 Identities=23% Similarity=0.408 Sum_probs=48.6
Q ss_pred CcccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEc
Q 025583 2 MYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 53 (250)
Q Consensus 2 kfG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~ 53 (250)
+||+|++|.|+. ++.++|||||+|.++++|++|+.+|||..|+|++|.|+++
T Consensus 50 ~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 50 KYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred cCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 799999999965 5678999999999999999999999999999999999986
No 177
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=4.2e-13 Score=91.70 Aligned_cols=57 Identities=30% Similarity=0.477 Sum_probs=52.6
Q ss_pred CcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 2 MYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
+||+|.+|.|+. ++.++|||||+|.+.++|++|+..|||..|+|+.|.|.++.....
T Consensus 31 ~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 90 (99)
T 1whw_A 31 AYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKE 90 (99)
T ss_dssp TTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCST
T ss_pred hcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCcc
Confidence 799999999964 678899999999999999999999999999999999999987654
No 178
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=4.2e-13 Score=90.97 Aligned_cols=58 Identities=28% Similarity=0.434 Sum_probs=52.7
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
.+||+|.+|.|+. ++.++|||||+|.+.++|++|+..|||..|+|+.|.|.++.....
T Consensus 27 ~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 87 (95)
T 2dnz_A 27 EPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLD 87 (95)
T ss_dssp TTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCC
T ss_pred HhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccC
Confidence 4799999999965 578899999999999999999999999999999999999976543
No 179
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=2.9e-13 Score=94.52 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=50.9
Q ss_pred CCcccEEEEEEecC------CCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 1 MMYGPIVDIDLKIP------PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 1 ~kfG~I~~v~i~~~------~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
.+||+|.+|.|+.. +.++|||||+|.++++|++||+.|||..|+|++|.|.++..+.
T Consensus 40 ~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 40 GKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp TTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCS
T ss_pred hccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEeccccc
Confidence 47999999999642 2567999999999999999999999999999999999998665
No 180
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.44 E-value=2.1e-13 Score=96.92 Aligned_cols=75 Identities=17% Similarity=0.257 Sum_probs=62.5
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCee--EEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCcceee
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVC--FSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 152 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~--~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~ 152 (250)
+.....+|||+|||+.+++++|+++|.+| .|+ .+.|..+..+. ||||+|.+.++|.+|++. ++..|.| +
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~g----R 111 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGH----R 111 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTT----B
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECC----E
Confidence 34556799999999999999999999999 677 78888776543 999999999999999984 7799998 4
Q ss_pred EEEEEe
Q 025583 153 YVRVRE 158 (250)
Q Consensus 153 ~i~v~~ 158 (250)
.|.|..
T Consensus 112 ~I~V~~ 117 (126)
T 2hgm_A 112 YIEVFK 117 (126)
T ss_dssp CCCCEE
T ss_pred EEEEEE
Confidence 555543
No 181
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.44 E-value=7.5e-14 Score=93.72 Aligned_cols=72 Identities=28% Similarity=0.347 Sum_probs=63.3
Q ss_pred ceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEe
Q 025583 83 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 158 (250)
Q Consensus 83 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 158 (250)
.+|||+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.+ |..|+..|||..+.|+ .|.|..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~----~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGR----TIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSS----SCSEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCe----EEEEEE
Confidence 47999999999999999999999999999999877542 29999999999 9999999999999994 555554
Q ss_pred c
Q 025583 159 Y 159 (250)
Q Consensus 159 ~ 159 (250)
.
T Consensus 77 a 77 (90)
T 2ki2_A 77 A 77 (90)
T ss_dssp C
T ss_pred c
Confidence 4
No 182
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.9e-13 Score=92.02 Aligned_cols=56 Identities=21% Similarity=0.305 Sum_probs=50.3
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
+||+|.+|.|+.....+|||||+|.++++|++|+..|||..|+|+.|.|.++++..
T Consensus 36 ~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~ 91 (96)
T 2dgx_A 36 RHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGAS 91 (96)
T ss_dssp HHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCSS
T ss_pred ccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 69999999997643339999999999999999999999999999999999997654
No 183
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=2.3e-13 Score=96.49 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=63.7
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCe----eEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCcceee
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDV----CFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 152 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v----~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~ 152 (250)
....+|||+|||+.+++++|+++|.+||.| ..+.|..+..+. ||||+|.+.++|.+||+. |+..+.| +
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~g----R 95 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGK----R 95 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSS----C
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCC----e
Confidence 455799999999999999999999999975 578888775543 999999999999999986 9999988 5
Q ss_pred EEEEEec
Q 025583 153 YVRVREY 159 (250)
Q Consensus 153 ~i~v~~~ 159 (250)
.|.|...
T Consensus 96 ~i~V~~a 102 (123)
T 2dha_A 96 YIELFRS 102 (123)
T ss_dssp EECCEEE
T ss_pred EEEEEEC
Confidence 6666543
No 184
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.43 E-value=2.7e-13 Score=89.49 Aligned_cols=56 Identities=21% Similarity=0.366 Sum_probs=51.4
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 56 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~ 56 (250)
.+||+|.+|.|+. ++.++|||||+|.++++|++|+..|||..|+|+.|.|.++...
T Consensus 23 ~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 23 KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp TTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred HhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 4799999999963 6788999999999999999999999999999999999998754
No 185
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.43 E-value=5.3e-13 Score=103.42 Aligned_cols=76 Identities=16% Similarity=0.167 Sum_probs=67.8
Q ss_pred CCceEEEeCCC-CccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEec
Q 025583 81 SDYRVLVTGLP-SSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 159 (250)
Q Consensus 81 ~~~~l~v~~lp-~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~ 159 (250)
+..+|||+||| ..+++++|.++|.+||.|..+.+..+..+ ||||+|.+.++|..|++.|||..+.| +.|.|...
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g-~afV~f~~~~~A~~Ai~~lng~~~~g----~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPG-AAMVEMADGYAVDRAITHLNNNFMFG----QKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTT-CEEEEESSHHHHHHHHHHHTTCEETT----EECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCC-EEEEEECCHHHHHHHHHHhCCCEECC----ceEEEEEc
Confidence 34699999999 89999999999999999999999876433 89999999999999999999999999 68888765
Q ss_pred cc
Q 025583 160 DS 161 (250)
Q Consensus 160 ~~ 161 (250)
..
T Consensus 78 ~~ 79 (205)
T 3tyt_A 78 KQ 79 (205)
T ss_dssp SC
T ss_pred cC
Confidence 43
No 186
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.43 E-value=9.6e-13 Score=102.65 Aligned_cols=77 Identities=17% Similarity=0.129 Sum_probs=66.3
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 154 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 154 (250)
..+..+|||+|||..+++++|+++|.+||+|..+.|..+...+ ||||+|.+.++|..|++.|++..+.| +.|
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g----~~i 87 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG----KPV 87 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCC----ccc
Confidence 3455799999999999999999999999999999999876533 99999999999999999999999999 566
Q ss_pred EEEec
Q 025583 155 RVREY 159 (250)
Q Consensus 155 ~v~~~ 159 (250)
.+...
T Consensus 88 ~~~~~ 92 (213)
T 4f02_A 88 RIMWS 92 (213)
T ss_dssp EEEEC
T ss_pred ccccc
Confidence 65543
No 187
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.43 E-value=6.7e-13 Score=96.97 Aligned_cols=79 Identities=15% Similarity=0.133 Sum_probs=65.2
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeE--------EEEEec-CCCcEEEEEecCHHHHHHHHHHccCCcccCcce
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRD-RGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 150 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~--------~~~~~~-~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~ 150 (250)
.+..+|||+|||..+++++|+++|.+||.|.. +.+... ...+||||+|.+.++|..|+..|||..|.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g--- 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG--- 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC---
Confidence 45579999999999999999999999998765 333322 222399999999999999999999999999
Q ss_pred eeEEEEEecccC
Q 025583 151 RSYVRVREYDSR 162 (250)
Q Consensus 151 ~~~i~v~~~~~~ 162 (250)
+.|.|......
T Consensus 120 -~~l~V~~a~~~ 130 (143)
T 3egn_A 120 -KPMVVQFARSA 130 (143)
T ss_dssp -EECEEEECCCS
T ss_pred -cEEEEEECCCC
Confidence 78888776544
No 188
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.43 E-value=9e-13 Score=88.20 Aligned_cols=77 Identities=10% Similarity=0.093 Sum_probs=58.9
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 157 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 157 (250)
+..+.++|||+|||..+++++|+++|.+||.|..+.+..+.. +||||+|.+.++|.+ |++..+.+. ...|.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~sr-GfaFV~F~~~~~A~~----~~~~~~~~~--g~~v~v~ 79 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFR-AFAFVTFADDKVAQS----LCGEDLIIK--GISVHIS 79 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCC-SEEEEEESCHHHHHH----HTTCEEEET--TEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCC-CEEEEEECCHHHHHH----HcCCCcccC--CEEEEEE
Confidence 345667999999999999999999999999999999987633 399999999999883 566655421 1677777
Q ss_pred eccc
Q 025583 158 EYDS 161 (250)
Q Consensus 158 ~~~~ 161 (250)
....
T Consensus 80 ~a~~ 83 (89)
T 3d2w_A 80 NAEP 83 (89)
T ss_dssp ECC-
T ss_pred EcCC
Confidence 6543
No 189
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.43 E-value=9.8e-14 Score=95.25 Aligned_cols=77 Identities=17% Similarity=0.218 Sum_probs=62.7
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEec----CCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEE
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD----RGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 155 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~----~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 155 (250)
....+|||+|||..+++++|+++|.+||.|.. .++.+ ...+||||+|.+.++|..|++ ||+..+.| ..|.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g----~~l~ 88 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG----NEIK 88 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTT----BCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECC----cEEE
Confidence 35679999999999999999999999997755 22222 222399999999999999999 99999999 6777
Q ss_pred EEecccC
Q 025583 156 VREYDSR 162 (250)
Q Consensus 156 v~~~~~~ 162 (250)
|......
T Consensus 89 V~~a~~~ 95 (101)
T 1fj7_A 89 LEKPKGR 95 (101)
T ss_dssp EECCSCC
T ss_pred EEEcCCC
Confidence 7766443
No 190
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=3.9e-13 Score=92.58 Aligned_cols=58 Identities=33% Similarity=0.525 Sum_probs=52.6
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
.+||+|.+|.|+. ++.++|||||+|.++++|++||..|||..|+|+.|.|.++.....
T Consensus 37 ~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 97 (103)
T 2cq0_A 37 RPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 97 (103)
T ss_dssp TTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCC
T ss_pred HhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCCC
Confidence 4799999999964 678899999999999999999999999999999999999976543
No 191
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2.5e-13 Score=93.33 Aligned_cols=59 Identities=34% Similarity=0.520 Sum_probs=53.2
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 59 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~ 59 (250)
.+||+|++|.|+. ++.++|||||+|.++++|++|+..|||..|+|+.|.|.++......
T Consensus 34 ~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 95 (102)
T 2cqb_A 34 IPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRIK 95 (102)
T ss_dssp TTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred hccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCCC
Confidence 4799999999954 6789999999999999999999999999999999999999866543
No 192
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.43 E-value=2e-13 Score=90.98 Aligned_cols=56 Identities=29% Similarity=0.444 Sum_probs=50.2
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 56 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~ 56 (250)
++||+|.+|.|+. ++.++|||||+|.+.++|++|+..|||..|+|+.|.|.++..+
T Consensus 28 ~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 28 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred HhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence 3799999999964 6788999999999999999999999999999999999998653
No 193
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.42 E-value=1.7e-13 Score=93.92 Aligned_cols=55 Identities=24% Similarity=0.385 Sum_probs=50.8
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCC-eEEEEEEccC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG-YRLRVELAHG 55 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~g-r~i~V~~~~~ 55 (250)
++||+|.+|.|+. ++.++|||||+|.++++|++|+..|||..|+| +.|.|.++.+
T Consensus 34 ~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 34 SKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKD 92 (100)
T ss_dssp HTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHH
T ss_pred HhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECch
Confidence 3799999999964 68899999999999999999999999999999 9999999864
No 194
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=3.2e-13 Score=93.02 Aligned_cols=58 Identities=43% Similarity=0.704 Sum_probs=52.7
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
.+||+|.+|.|+. ++.++|||||+|.++++|++|+..|||..|+|+.|.|.++.....
T Consensus 35 ~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2dnm_A 35 EKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRR 95 (103)
T ss_dssp TTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCCS
T ss_pred HhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcCCC
Confidence 4799999999964 578899999999999999999999999999999999999986543
No 195
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=4.5e-13 Score=90.63 Aligned_cols=54 Identities=22% Similarity=0.392 Sum_probs=49.9
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEcc
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 54 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~ 54 (250)
.+||+|..|.|+. ++.++|||||+|.++++|++|++.|||..|+|+.|.|++++
T Consensus 38 ~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 38 SKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp TTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred HhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 4799999999965 57889999999999999999999999999999999999974
No 196
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=4e-13 Score=92.00 Aligned_cols=57 Identities=25% Similarity=0.484 Sum_probs=51.8
Q ss_pred CCcccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 1 MMYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 1 ~kfG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
.+||+|.+|.|+. ++.++|||||+|.++++|++|+..|||..|+|+.|.|.++.+..
T Consensus 39 ~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 97 (100)
T 2do4_A 39 KAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGP 97 (100)
T ss_dssp TTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCS
T ss_pred HhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 4799999999965 67788999999999999999999999999999999999997654
No 197
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.42 E-value=5.4e-13 Score=93.89 Aligned_cols=57 Identities=30% Similarity=0.502 Sum_probs=52.6
Q ss_pred CcccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 2 MYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 2 kfG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
+||+|++|.|+. ++.++|||||+|.+.++|++|+..|||..|+|+.|.|++++....
T Consensus 30 ~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 88 (116)
T 2fy1_A 30 KHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSF 88 (116)
T ss_dssp TSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSC
T ss_pred hcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 799999999965 788899999999999999999999999999999999999986554
No 198
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.42 E-value=8.8e-13 Score=92.64 Aligned_cols=59 Identities=27% Similarity=0.407 Sum_probs=53.1
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 59 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~ 59 (250)
.+||.|.+|.|+. ++.++|||||+|.++++|++||..|||..|+|+.|.|.++......
T Consensus 37 ~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 37 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA 98 (115)
T ss_dssp GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCC
T ss_pred HhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCCCC
Confidence 3799999999964 6788999999999999999999999999999999999999866543
No 199
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.42 E-value=3.3e-13 Score=93.13 Aligned_cols=54 Identities=24% Similarity=0.409 Sum_probs=49.1
Q ss_pred CCcccEEEEEEecC-----CCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEcc
Q 025583 1 MMYGPIVDIDLKIP-----PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 54 (250)
Q Consensus 1 ~kfG~I~~v~i~~~-----~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~ 54 (250)
+|||+|++|.|+.. +.++|||||+|.++++|++|+.+|||..|+|++|.|.++.
T Consensus 37 ~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 37 SKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp HTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 38999999999752 3578999999999999999999999999999999999974
No 200
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.42 E-value=8.8e-13 Score=93.44 Aligned_cols=76 Identities=14% Similarity=0.175 Sum_probs=65.1
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEe
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 158 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 158 (250)
.....+|||+|| .+++++|+++|.+||.|..+.+.... +||||+|.+.++|..|++.|||..+.| ..|.|..
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~k--g~aFV~f~~~~~A~~Ai~~lng~~~~g----~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPR--NCAFVTYEKMESADQAVAELNGTQVES----VQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTT--TEEEEECSSHHHHHHHHHHHTTCBCSS----CBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCC--CEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEE
Confidence 345679999996 69999999999999999999886333 399999999999999999999999999 6777776
Q ss_pred cccC
Q 025583 159 YDSR 162 (250)
Q Consensus 159 ~~~~ 162 (250)
....
T Consensus 108 a~~~ 111 (121)
T 2bz2_A 108 ARKQ 111 (121)
T ss_dssp CCSS
T ss_pred eCCC
Confidence 6544
No 201
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.41 E-value=9.1e-14 Score=93.54 Aligned_cols=57 Identities=19% Similarity=0.363 Sum_probs=50.0
Q ss_pred Ccc-cEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhC-CCccCCeEEEEEEccCCCC
Q 025583 2 MYG-PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRD-GYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 2 kfG-~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~-g~~~~gr~i~V~~~~~~~~ 58 (250)
+|| +|.+|.|+. ++.++|||||+|.++++|++||+.|+ +..|+|++|.|+++.+++.
T Consensus 24 ~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~~ 85 (91)
T 2lxi_A 24 SHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPK 85 (91)
T ss_dssp HHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCCC
T ss_pred HhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCCC
Confidence 689 899999954 78899999999999999999998874 5789999999999976544
No 202
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=9.3e-13 Score=89.96 Aligned_cols=57 Identities=21% Similarity=0.426 Sum_probs=51.6
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
.+||+|.+|.|+. ++.++|||||+|.+.++|++||. ||+..|+|+.|.|.++.....
T Consensus 32 ~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~~ 91 (99)
T 2dgs_A 32 KKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDS 91 (99)
T ss_dssp SSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCCCC
T ss_pred HhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCCcc
Confidence 4799999999964 67889999999999999999997 999999999999999986544
No 203
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.41 E-value=2.4e-13 Score=93.95 Aligned_cols=56 Identities=30% Similarity=0.462 Sum_probs=51.4
Q ss_pred CCcccEEEEEEec-CCCCCcEEEEEECChHHHHHHHHhhCCCccCCe-EEEEEEccCC
Q 025583 1 MMYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY-RLRVELAHGG 56 (250)
Q Consensus 1 ~kfG~I~~v~i~~-~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr-~i~V~~~~~~ 56 (250)
++||+|.+|.|+. ++.++|||||+|.++++|++|+..|||..|+|+ +|.|.++...
T Consensus 43 ~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 43 SKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp GGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred hcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence 4799999999974 788999999999999999999999999999998 9999998643
No 204
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.41 E-value=5.5e-13 Score=90.59 Aligned_cols=56 Identities=27% Similarity=0.615 Sum_probs=51.7
Q ss_pred CcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 2 MYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
+||+|.+|.|+. ++.++|||||+|.+.++|++|+..|||..|+|+.|.|.++....
T Consensus 25 ~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 83 (96)
T 2x1f_A 25 NVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSD 83 (96)
T ss_dssp TTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSS
T ss_pred hcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCC
Confidence 799999999964 57889999999999999999999999999999999999997654
No 205
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=5.4e-13 Score=91.83 Aligned_cols=58 Identities=22% Similarity=0.343 Sum_probs=52.7
Q ss_pred CCcccEEEEEEec-CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 1 MMYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 1 ~kfG~I~~v~i~~-~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
.+||+|.+|.|+. ++.++|||||+|.+.++|++|+..|||..|+|+.|.|.++.....
T Consensus 37 ~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2d9p_A 37 SPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 95 (103)
T ss_dssp TTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCC
T ss_pred HhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeccccc
Confidence 4799999999965 677899999999999999999999999999999999999986554
No 206
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.1e-12 Score=90.36 Aligned_cols=59 Identities=24% Similarity=0.425 Sum_probs=52.3
Q ss_pred CCcccEEEEEEec-CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCC
Q 025583 1 MMYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 59 (250)
Q Consensus 1 ~kfG~I~~v~i~~-~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~ 59 (250)
.+||+|.+|.|+. .+.++|||||+|.+.++|++|+..|||..|+|+.|.|.++......
T Consensus 37 ~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 96 (103)
T 2cq3_A 37 GQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMT 96 (103)
T ss_dssp GGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCCC
T ss_pred HhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCCC
Confidence 3799999999975 3457999999999999999999999999999999999999876543
No 207
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.41 E-value=2.9e-13 Score=89.78 Aligned_cols=54 Identities=35% Similarity=0.582 Sum_probs=49.6
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEcc
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 54 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~ 54 (250)
.+||+|.+|.|+. ++.++|||||+|.++++|++|+..|||..|+|+.|.|++++
T Consensus 29 ~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 29 IPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp GGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred hccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3799999999953 67789999999999999999999999999999999999874
No 208
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=6.5e-13 Score=91.75 Aligned_cols=57 Identities=30% Similarity=0.445 Sum_probs=52.5
Q ss_pred CcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 2 MYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
+||+|++|.|+. ++.++|||||+|.++++|++|+..|||..|+|+.|.|.++.....
T Consensus 38 ~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 97 (105)
T 1x5u_A 38 QAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNK 97 (105)
T ss_dssp TTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSC
T ss_pred hcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCc
Confidence 799999999965 678999999999999999999999999999999999999977654
No 209
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.2e-12 Score=90.03 Aligned_cols=57 Identities=25% Similarity=0.367 Sum_probs=51.1
Q ss_pred CcccEEEEEEec-CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 2 MYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 2 kfG~I~~v~i~~-~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
+||+|.+|.|+. ...++|||||+|.++++|++|+..|||..|.|+.|.|.++.....
T Consensus 38 ~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2cqi_A 38 QIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSS 95 (103)
T ss_dssp HHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTTC
T ss_pred hcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCcc
Confidence 699999999976 445789999999999999999999999999999999999986543
No 210
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.10 E-value=2.5e-14 Score=100.84 Aligned_cols=79 Identities=20% Similarity=0.304 Sum_probs=67.8
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeE--------EEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccC
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRN 147 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g 147 (250)
.+..+|||+|||..+++++|+++|.+||.|.. +.+..+... +||||+|.+.++|..|++.||+..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 44569999999999999999999999999988 777766432 299999999999999999999999999
Q ss_pred cceeeEEEEEecccC
Q 025583 148 AFSRSYVRVREYDSR 162 (250)
Q Consensus 148 ~~~~~~i~v~~~~~~ 162 (250)
..|.|......
T Consensus 85 ----~~l~V~~a~~~ 95 (116)
T 2lcw_A 85 ----NPIKVSFATRR 95 (116)
Confidence 67777766544
No 211
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.40 E-value=2e-13 Score=92.36 Aligned_cols=55 Identities=22% Similarity=0.392 Sum_probs=48.6
Q ss_pred CCccc--EEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCC----ccCCeEEEEEEccC
Q 025583 1 MMYGP--IVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGY----NFDGYRLRVELAHG 55 (250)
Q Consensus 1 ~kfG~--I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~----~~~gr~i~V~~~~~ 55 (250)
++||. |.+|.|+. ++.++|||||+|.++++|++|++.|||. .|+|++|.|++++.
T Consensus 31 ~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 31 SPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp TTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred HhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 47995 67888854 7899999999999999999999999997 48999999999864
No 212
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=5.2e-13 Score=90.68 Aligned_cols=57 Identities=21% Similarity=0.410 Sum_probs=51.8
Q ss_pred CcccEEEE-EEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 2 MYGPIVDI-DLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 2 kfG~I~~v-~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
+||+|.+| .|+. ++.++|||||+|.++++|++|+..|||..|+|+.|.|.++.....
T Consensus 28 ~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 88 (96)
T 1x5t_A 28 AFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDS 88 (96)
T ss_dssp TTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCCC
T ss_pred hcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccCC
Confidence 79999999 8854 678899999999999999999999999999999999999976543
No 213
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.39 E-value=2.5e-13 Score=87.87 Aligned_cols=64 Identities=11% Similarity=0.161 Sum_probs=57.4
Q ss_pred eEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCc
Q 025583 84 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNA 148 (250)
Q Consensus 84 ~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~ 148 (250)
+|||+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|..|++ +++..+.|+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~ 68 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLS 68 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTB
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCE
Confidence 5899999999999999999999999999998876442 299999999999999998 488999994
No 214
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=4.2e-13 Score=92.86 Aligned_cols=56 Identities=29% Similarity=0.570 Sum_probs=51.3
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 56 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~ 56 (250)
.+||+|.+|.|+. ++.++|||||+|.+.++|++|+..|||..|+|+.|.|.++...
T Consensus 45 ~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 103 (106)
T 1p27_B 45 AEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVR 103 (106)
T ss_dssp GGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEES
T ss_pred hccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCC
Confidence 3799999999964 5788999999999999999999999999999999999998754
No 215
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.38 E-value=1.9e-13 Score=93.00 Aligned_cols=57 Identities=26% Similarity=0.466 Sum_probs=52.3
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
.+||+|.+|.|+.++.++|||||+|.+.++|+.|+..|||..|+|+.|.|.++....
T Consensus 34 ~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (97)
T 1nu4_A 34 SRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDS 90 (97)
T ss_dssp GGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCC
T ss_pred HhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCC
Confidence 379999999998777789999999999999999999999999999999999997643
No 216
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.38 E-value=8.6e-13 Score=90.64 Aligned_cols=74 Identities=18% Similarity=0.306 Sum_probs=63.5
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCcceeeEEEE
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 156 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 156 (250)
....+|||+|||..+++++|+++|..||.|..+.+..+..+. ||||+|.+.++|..|++ ++..+.| ..|.|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g----~~l~v 80 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHG----KKLKL 80 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETT----EECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECC----EEEEE
Confidence 445799999999999999999999999999999999876432 99999999999999998 8888888 45554
Q ss_pred Eec
Q 025583 157 REY 159 (250)
Q Consensus 157 ~~~ 159 (250)
...
T Consensus 81 ~~a 83 (102)
T 2xs2_A 81 GPA 83 (102)
T ss_dssp EEE
T ss_pred EEC
Confidence 433
No 217
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.38 E-value=4.9e-13 Score=90.04 Aligned_cols=57 Identities=23% Similarity=0.384 Sum_probs=52.3
Q ss_pred CcccEEEEEEec-CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 2 MYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 2 kfG~I~~v~i~~-~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
+||+|.+|.|+. ++.++|||||+|.+.++|++|+..|||..|+|+.|.|.+++....
T Consensus 31 ~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 88 (92)
T 2dgv_A 31 ECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNASG 88 (92)
T ss_dssp TTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCSS
T ss_pred hcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCC
Confidence 799999999975 778899999999999999999999999999999999999976543
No 218
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.5e-12 Score=90.17 Aligned_cols=57 Identities=21% Similarity=0.220 Sum_probs=51.3
Q ss_pred CCcccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 1 MMYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 1 ~kfG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
.+||+|++|.|+. ++.++|||||+|.+.++|++|+..|||..|+|+.|.|+++....
T Consensus 37 ~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 95 (114)
T 2do0_A 37 SMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERAL 95 (114)
T ss_dssp TTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCCC
T ss_pred HhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccCC
Confidence 4799999999964 66778999999999999999999999999999999999987543
No 219
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=7.2e-13 Score=90.33 Aligned_cols=57 Identities=21% Similarity=0.409 Sum_probs=51.2
Q ss_pred CcccEEEEEEec------CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 2 MYGPIVDIDLKI------PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 2 kfG~I~~v~i~~------~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
+||+|..|.|+. ++.++|||||+|.+.++|++|+..|||..|+|+.|.|.++.....
T Consensus 28 ~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 90 (98)
T 2cpf_A 28 KVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATK 90 (98)
T ss_dssp TTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSSC
T ss_pred hcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCC
Confidence 799999999964 337789999999999999999999999999999999999976554
No 220
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.38 E-value=6.2e-12 Score=96.43 Aligned_cols=117 Identities=13% Similarity=0.175 Sum_probs=82.2
Q ss_pred ChHHHHHHHHhh--CCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCccCHHHHHHHhh
Q 025583 27 DYRDAEDAIRGR--DGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMR 104 (250)
Q Consensus 27 ~~e~A~~A~~~l--~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~ 104 (250)
+.+.+..|+... ....+.+..+.|......+.+.. .. .........+|||+|||..+++++|+++|.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~--~~---------~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~ 131 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEV--TD---------EYKNDVKNRSVYIKGFPTDATLDDIKEWLE 131 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCC--CH---------HHHHHHHHTEEEEECCCTTCCHHHHHHHHT
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCccc--ch---------hhhhccccCEEEecCCCCcCCHHHHHHHHh
Confidence 567788888776 55556555555544321110000 00 000011346899999999999999999999
Q ss_pred ccCCeeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEec
Q 025583 105 RAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 159 (250)
Q Consensus 105 ~~g~v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~ 159 (250)
+||.|..+.+..+..+. ||||+|.+.++|..|+..++ ..+.| +.|.|...
T Consensus 132 ~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~G----r~l~V~~~ 184 (193)
T 2voo_A 132 DKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKE----TDLLILFK 184 (193)
T ss_dssp TSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETT----EECEEEET
T ss_pred cCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECC----EEEEEEEh
Confidence 99999999998876543 99999999999999998665 58999 67777654
No 221
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=6.7e-13 Score=91.19 Aligned_cols=57 Identities=32% Similarity=0.580 Sum_probs=52.1
Q ss_pred CcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 2 MYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
+||+|.+|.|+. ++.++|||||+|.++++|++|+..|||..|+|+.|.|.++.....
T Consensus 35 ~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 94 (102)
T 1x5s_A 35 KYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSD 94 (102)
T ss_dssp HHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCC
T ss_pred hcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 699999999965 677899999999999999999999999999999999999976543
No 222
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.38 E-value=4.4e-12 Score=94.59 Aligned_cols=75 Identities=20% Similarity=0.348 Sum_probs=67.1
Q ss_pred CceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCC-C---cEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEE
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-G---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 157 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~---~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 157 (250)
.++|||+|||..+++++|+++|..||.|..+.+..+.. + +||||+|.+.++|..|++.|++..+.| ..|.|.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g----~~l~v~ 77 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT----KTIKVS 77 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCC----ceEEEE
Confidence 46899999999999999999999999999999998763 2 299999999999999999999999999 677776
Q ss_pred ecc
Q 025583 158 EYD 160 (250)
Q Consensus 158 ~~~ 160 (250)
...
T Consensus 78 ~~~ 80 (167)
T 1fxl_A 78 YAR 80 (167)
T ss_dssp ECC
T ss_pred ecC
Confidence 554
No 223
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.38 E-value=8.1e-13 Score=92.08 Aligned_cols=57 Identities=26% Similarity=0.405 Sum_probs=51.7
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
.+||+|.+|.|+. ++.++|||||+|.+.++|++|+..|||..|+|+.|.|.++....
T Consensus 48 ~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 107 (110)
T 1oo0_B 48 CDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG 107 (110)
T ss_dssp GGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEESS
T ss_pred HhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccCC
Confidence 3799999999964 67889999999999999999999999999999999999987543
No 224
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=7.5e-13 Score=89.68 Aligned_cols=54 Identities=37% Similarity=0.690 Sum_probs=49.9
Q ss_pred CcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccC
Q 025583 2 MYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 55 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~ 55 (250)
+||+|.+|.|+. ++.++|||||+|.++++|++|+..|||..|+|+.|.|++++.
T Consensus 38 ~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 38 KYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp TTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred hcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 799999999964 577899999999999999999999999999999999999863
No 225
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.37 E-value=6.8e-13 Score=95.12 Aligned_cols=56 Identities=36% Similarity=0.687 Sum_probs=51.5
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 56 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~ 56 (250)
.+||+|.+|.|+. ++.++|||||+|.++++|++||..|||..|+|+.|.|+++..+
T Consensus 68 ~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~ 126 (129)
T 2kxn_B 68 SKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITK 126 (129)
T ss_dssp TTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSS
T ss_pred HhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 4799999999964 6789999999999999999999999999999999999998754
No 226
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.37 E-value=6.2e-13 Score=90.09 Aligned_cols=55 Identities=18% Similarity=0.334 Sum_probs=50.0
Q ss_pred CCcccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccC
Q 025583 1 MMYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 55 (250)
Q Consensus 1 ~kfG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~ 55 (250)
.+||+|.+|.|+. ++.++|||||+|.++++|++|+..|||..|+|+.|.|.+++.
T Consensus 38 ~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 38 LQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp GGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred HhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence 3799999999965 567789999999999999999999999999999999999853
No 227
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.37 E-value=1.1e-12 Score=90.60 Aligned_cols=58 Identities=22% Similarity=0.288 Sum_probs=52.2
Q ss_pred CCcccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCC---eEEEEEEccCCCC
Q 025583 1 MMYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG---YRLRVELAHGGRR 58 (250)
Q Consensus 1 ~kfG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~g---r~i~V~~~~~~~~ 58 (250)
.+||+|+.|.|+. ++.++|||||+|.+.++|++||..|||..|.| +.|.|.++.....
T Consensus 37 ~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~ 99 (105)
T 2dnh_A 37 QPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKE 99 (105)
T ss_dssp TTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCC
T ss_pred HhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCcc
Confidence 4799999999965 67779999999999999999999999999998 9999999986553
No 228
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.37 E-value=1.2e-13 Score=92.77 Aligned_cols=56 Identities=13% Similarity=0.135 Sum_probs=48.2
Q ss_pred Ccc--cEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 2 MYG--PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 2 kfG--~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
+|| +|.+|.|+. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.++.+..
T Consensus 24 ~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~ 84 (90)
T 3p5t_L 24 SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLE 84 (90)
T ss_dssp TTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC----
T ss_pred HhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCc
Confidence 699 999999964 78899999999999999999999999999999999999987654
No 229
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.37 E-value=6.4e-13 Score=93.37 Aligned_cols=58 Identities=22% Similarity=0.445 Sum_probs=52.4
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
.+||+|++|.|+. ++.++|||||+|.+.++|++||..|||..|+|+.|.|+++.....
T Consensus 47 ~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 107 (115)
T 2cpz_A 47 MPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKND 107 (115)
T ss_dssp GGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCC
T ss_pred HhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCc
Confidence 3799999999964 678899999999999999999999999999999999999976543
No 230
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=2e-12 Score=87.92 Aligned_cols=55 Identities=24% Similarity=0.506 Sum_probs=50.0
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
.+||+|.+|.|. .++|||||+|.+.++|++||..|||..|+|+.|.|.++.....
T Consensus 35 ~~~G~i~~v~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 35 SPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp TTTSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred hhCCCEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 479999999995 5689999999999999999999999999999999999976543
No 231
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.2e-12 Score=87.48 Aligned_cols=74 Identities=11% Similarity=0.135 Sum_probs=59.5
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcc--cCcceeeEEEEEe
Q 025583 81 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF--RNAFSRSYVRVRE 158 (250)
Q Consensus 81 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~--~g~~~~~~i~v~~ 158 (250)
...+|||+|||..+++++|+++|.+||.|..+.+..+.. +||||+|.+.++|++| ++..+ .| ..|.|..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~afV~f~~~~~a~~~----~~~~~~~~g----~~l~v~~ 74 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFR-AFAFVTFADDQIAQSL----CGEDLIIKG----ISVHISN 74 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCC-SCCEEECSCHHHHHHT----TTCEEEETT----EEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCC-CEEEEEECCHHHHHHH----hcCCceeCC----EEEEEEe
Confidence 346999999999999999999999999999999987633 3999999999999754 44444 55 6777776
Q ss_pred cccCC
Q 025583 159 YDSRR 163 (250)
Q Consensus 159 ~~~~r 163 (250)
.....
T Consensus 75 a~~~~ 79 (88)
T 1wf0_A 75 AEPKH 79 (88)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 65443
No 232
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.37 E-value=1.2e-12 Score=95.17 Aligned_cols=58 Identities=34% Similarity=0.664 Sum_probs=52.5
Q ss_pred CcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCC
Q 025583 2 MYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 59 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~ 59 (250)
+||+|++|.|+. ++.++|||||+|.+.++|++|+..|||..|+|+.|.|.++......
T Consensus 65 ~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 125 (139)
T 1u6f_A 65 RYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQR 125 (139)
T ss_dssp HHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCCC
T ss_pred hcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 699999999964 5778999999999999999999999999999999999999876543
No 233
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.2e-12 Score=91.47 Aligned_cols=56 Identities=27% Similarity=0.391 Sum_probs=50.2
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
.+||+|.+|.|+ ...++|||||+|.++++|++|+..|||..|+|++|.|.++.+..
T Consensus 48 ~~~G~v~~v~i~-~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 48 SKFGQIRKLLLF-DRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp GGTSCCSEEEEE-TTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCC
T ss_pred HccCCEeEEEEe-cCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence 479999999774 44589999999999999999999999999999999999987643
No 234
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.37 E-value=3.1e-13 Score=88.85 Aligned_cols=50 Identities=32% Similarity=0.535 Sum_probs=46.2
Q ss_pred CCcccEEEEEEec-CCCCCcEEEEEECChHHHHHHHHhhCCCccCCe-EEEE
Q 025583 1 MMYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY-RLRV 50 (250)
Q Consensus 1 ~kfG~I~~v~i~~-~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr-~i~V 50 (250)
++||+|.+|.|+. ++.++|||||+|.++++|++|+..|||..|+|+ +|.|
T Consensus 29 ~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 29 SKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp HTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred hhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 3799999999964 788999999999999999999999999999999 8876
No 235
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=3.5e-12 Score=89.68 Aligned_cols=56 Identities=27% Similarity=0.402 Sum_probs=50.8
Q ss_pred CcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 2 MYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
+||+|++|.|+. ++.++|||||+|.++++|++||..||+ .|.|+.|.|+++.....
T Consensus 40 ~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~~~ 98 (116)
T 2cqd_A 40 GFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYLGAK 98 (116)
T ss_dssp TTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTTTCC
T ss_pred hCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcccCCC
Confidence 799999999964 678999999999999999999999998 89999999999976543
No 236
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=1.9e-12 Score=89.65 Aligned_cols=57 Identities=23% Similarity=0.385 Sum_probs=51.8
Q ss_pred CcccEEEEEEec----CCCCCcEEEEEECChHHHHHHHHhh-CCCccCCeEEEEEEccCCCC
Q 025583 2 MYGPIVDIDLKI----PPRPPGYAFLEFEDYRDAEDAIRGR-DGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 2 kfG~I~~v~i~~----~~~~~g~aFV~f~~~e~A~~A~~~l-~g~~~~gr~i~V~~~~~~~~ 58 (250)
+||+|..|.|+. ++.++|||||+|.+.++|++||..| ||..|.|+.|.|.++.....
T Consensus 38 ~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~ 99 (107)
T 2cph_A 38 TFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVT 99 (107)
T ss_dssp TTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCCC
T ss_pred ccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCCC
Confidence 799999999943 6788999999999999999999999 99999999999999976543
No 237
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.36 E-value=7e-13 Score=92.09 Aligned_cols=56 Identities=27% Similarity=0.506 Sum_probs=51.2
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 56 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~ 56 (250)
++||+|..|.|+. ++.++|||||+|.+.++|+.|+..|||..|+|+.|.|.+++..
T Consensus 48 ~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 48 EPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 106 (108)
T ss_dssp TTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSS
T ss_pred HhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccC
Confidence 4799999999963 6788999999999999999999999999999999999998754
No 238
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.36 E-value=7.4e-13 Score=92.48 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=48.5
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEcc
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 54 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~ 54 (250)
+|||+|++|.|... .++|||||+|.++++|++|+..|||..|+|+.|.|.++.
T Consensus 39 ~kfG~V~~v~i~~~-~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 39 NKHGGVIHIYVDKN-SAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp TTTTCCSEEEECTT-CTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred hccCCEEEEEEecC-CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 48999999999653 358999999999999999999999999999999999974
No 239
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=2.3e-12 Score=89.82 Aligned_cols=57 Identities=23% Similarity=0.450 Sum_probs=52.0
Q ss_pred CcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhC------CCccCCeEEEEEEccCCCC
Q 025583 2 MYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRD------GYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~------g~~~~gr~i~V~~~~~~~~ 58 (250)
+||+|.+|.|+. ++.++|||||+|.+.++|++||..|| |..|+|+.|.|.++.....
T Consensus 38 ~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 38 QFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDE 103 (111)
T ss_dssp TTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCCC
T ss_pred hcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCcc
Confidence 799999999964 67889999999999999999999999 9999999999999976543
No 240
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.36 E-value=1.3e-12 Score=88.55 Aligned_cols=53 Identities=23% Similarity=0.245 Sum_probs=47.6
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCc--cCCeEEEEEEccCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYN--FDGYRLRVELAHGG 56 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~--~~gr~i~V~~~~~~ 56 (250)
.+||+|.+|.|.. .+|||||+|++.++|.+|+..||+.. |.|++|.|++++.+
T Consensus 43 ~~fG~V~~v~i~~---~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 43 QEFGPISYVVVMP---KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp GGGSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred hccCCEEEEEEEc---CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 3799999999974 48999999999999999999999875 78999999999764
No 241
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.36 E-value=1.1e-12 Score=90.90 Aligned_cols=53 Identities=25% Similarity=0.408 Sum_probs=49.4
Q ss_pred CcccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEcc
Q 025583 2 MYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 54 (250)
Q Consensus 2 kfG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~ 54 (250)
+||+|.+|.|+. ++.++|||||+|.++++|++|+..|||..|+|+.|.|+++.
T Consensus 52 ~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 52 EFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp TTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred hcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 799999999964 77889999999999999999999999999999999999975
No 242
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.36 E-value=2.2e-12 Score=101.44 Aligned_cols=78 Identities=13% Similarity=0.224 Sum_probs=67.3
Q ss_pred CCCCCceEEEeCCCCcc---------CHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcc---
Q 025583 78 SRRSDYRVLVTGLPSSA---------SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF--- 145 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~---------~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~--- 145 (250)
......+|||+||+..+ ++++|+++|.+||+|..+.|+.+.. ||||+|.+.++|+.|++.|+|..|
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG--~AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKN--CGFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGT--EEEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCC--EEEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 35567799999999998 7999999999999999999987654 999999999999999999999999
Q ss_pred ---------cCcceeeEEEEEeccc
Q 025583 146 ---------RNAFSRSYVRVREYDS 161 (250)
Q Consensus 146 ---------~g~~~~~~i~v~~~~~ 161 (250)
.| ..|.|.....
T Consensus 208 ~~~e~~~~~~g----r~L~V~wA~~ 228 (240)
T 3u1l_A 208 SDKEWDDRREG----TGLLVKWANE 228 (240)
T ss_dssp TSTTGGGGGGS----CCCEEEECC-
T ss_pred ccccccccCCC----CEEEEEEccC
Confidence 66 5777766543
No 243
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.35 E-value=4.6e-12 Score=94.71 Aligned_cols=76 Identities=25% Similarity=0.310 Sum_probs=67.5
Q ss_pred CceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEE
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 157 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 157 (250)
.++|||+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|..|++.|++..+.| ..|.|.
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g----~~l~v~ 78 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRN----KRLKVS 78 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT----EECEEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCC----cEEEEE
Confidence 469999999999999999999999999999999877542 299999999999999999999999999 677777
Q ss_pred eccc
Q 025583 158 EYDS 161 (250)
Q Consensus 158 ~~~~ 161 (250)
....
T Consensus 79 ~~~~ 82 (168)
T 1b7f_A 79 YARP 82 (168)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 6543
No 244
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.35 E-value=1.1e-12 Score=92.64 Aligned_cols=54 Identities=22% Similarity=0.502 Sum_probs=49.5
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEcc
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 54 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~ 54 (250)
.+||+|.+|.|+. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|++++
T Consensus 62 ~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ak 118 (118)
T 2khc_A 62 LPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKK 118 (118)
T ss_dssp TTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC-
T ss_pred HhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 4799999999964 67889999999999999999999999999999999999874
No 245
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.35 E-value=4.4e-12 Score=87.24 Aligned_cols=53 Identities=19% Similarity=0.441 Sum_probs=48.9
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCC
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 59 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~ 59 (250)
+||+|.+|.|+ ++||||+|.++++|++|+..|||..|.|+.|.|.++......
T Consensus 34 ~~G~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 34 QFGKLERVKKL-----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp HHSCEEEEEEC-----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred hcCCEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 69999999997 789999999999999999999999999999999999876543
No 246
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.35 E-value=3.9e-12 Score=89.11 Aligned_cols=75 Identities=15% Similarity=0.193 Sum_probs=65.5
Q ss_pred ceEEEeCC----CCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecC----HHH----HHHHHH--HccCCc
Q 025583 83 YRVLVTGL----PSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTS----YDD----MKYAIR--KLDRSE 144 (250)
Q Consensus 83 ~~l~v~~l----p~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~----~~~----a~~a~~--~l~g~~ 144 (250)
..|+|+|| |+.+++.+|+++|..||+|..+.++.|+.++ ||||+|.+ +++ |..|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 48999999 9999999999999999999999999999875 99999996 333 788888 789999
Q ss_pred ccCcceeeEEEEEeccc
Q 025583 145 FRNAFSRSYVRVREYDS 161 (250)
Q Consensus 145 ~~g~~~~~~i~v~~~~~ 161 (250)
|+| +.|.|..++.
T Consensus 83 I~G----r~irV~ln~~ 95 (136)
T 2j8a_A 83 IMG----FKFEVILNKH 95 (136)
T ss_dssp ETT----EEEEEEECCT
T ss_pred ecC----cEEEEEECcc
Confidence 999 7888876644
No 247
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.35 E-value=1.1e-12 Score=92.17 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=48.4
Q ss_pred CCcccEEEEEEecC-------CCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEcc
Q 025583 1 MMYGPIVDIDLKIP-------PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 54 (250)
Q Consensus 1 ~kfG~I~~v~i~~~-------~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~ 54 (250)
.+||+|.+|.|+.. +.++|||||+|.++++|.+|+.+|||..|+|+.|.|.++.
T Consensus 47 ~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 47 GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp TTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred hccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcC
Confidence 48999999999641 3456999999999999999999999999999999999974
No 248
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.35 E-value=1.9e-12 Score=86.56 Aligned_cols=54 Identities=20% Similarity=0.405 Sum_probs=49.8
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 55 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~ 55 (250)
.+||+|.+|.|+. ++.++|||||+|.++++|++|+ .|||..|+|+.|.|.+++.
T Consensus 28 ~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 28 HGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp GGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred HhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 3799999999963 7788999999999999999999 9999999999999999865
No 249
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.34 E-value=1.6e-12 Score=88.86 Aligned_cols=54 Identities=22% Similarity=0.175 Sum_probs=47.4
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCC--ccCCeEEEEEEccCCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY--NFDGYRLRVELAHGGR 57 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~--~~~gr~i~V~~~~~~~ 57 (250)
.+||+|.+|.|+.. +|||||+|+++++|+.|+..||+. .|.|++|.|++++..+
T Consensus 38 ~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 93 (102)
T 1x4d_A 38 EPFGVISNHLILNK---INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYK 93 (102)
T ss_dssp GGGSCEEEEEECSS---SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCT
T ss_pred HhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCC
Confidence 47999999999743 699999999999999999999864 5999999999998544
No 250
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=8.7e-13 Score=91.78 Aligned_cols=56 Identities=25% Similarity=0.472 Sum_probs=50.7
Q ss_pred CCcccEEEEEEec-CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCC
Q 025583 1 MMYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 56 (250)
Q Consensus 1 ~kfG~I~~v~i~~-~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~ 56 (250)
.+||+|.+|.|+. .+.++|||||+|.+.++|++|+..|||..|+|+.|.|+++...
T Consensus 51 ~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 51 GQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp GGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred HhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 3799999999965 4568999999999999999999999999999999999998653
No 251
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.34 E-value=5e-12 Score=94.22 Aligned_cols=73 Identities=18% Similarity=0.262 Sum_probs=65.8
Q ss_pred eEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc---EEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEecc
Q 025583 84 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 160 (250)
Q Consensus 84 ~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~---~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~ 160 (250)
+|||+|||..+++++|+++|.+||.|..+.+..+..+. ||||+|.+.++|..|++.|+|..+.| ..|.|....
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g----~~i~v~~~~ 77 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIEN----NIVKINWAF 77 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEEEECC
T ss_pred EEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCC----CeeEEEEcC
Confidence 79999999999999999999999999999998776543 99999999999999999999999999 677776653
No 252
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=3.5e-12 Score=89.46 Aligned_cols=61 Identities=15% Similarity=0.184 Sum_probs=52.6
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCC-------CcEEEEEecCHHHHHHHHHHcc
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-------GMTGIVDYTSYDDMKYAIRKLD 141 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~-------~~~a~v~f~~~~~a~~a~~~l~ 141 (250)
....+|||+|||..+++++|+++|.+||.|. +.++.+.. .+||||+|.+.++|+.|++.|+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh
Confidence 3456899999999999999999999999999 66665432 2399999999999999999983
No 253
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.34 E-value=1.5e-12 Score=92.99 Aligned_cols=58 Identities=28% Similarity=0.537 Sum_probs=52.5
Q ss_pred CcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCC
Q 025583 2 MYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 59 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~ 59 (250)
+||+|.+|.|+. ++.++|||||+|.++++|++||..|||..|+|+.|.|+++......
T Consensus 45 ~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 45 EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPP 105 (126)
T ss_dssp TTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESSSC
T ss_pred hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCCC
Confidence 799999999953 7788999999999999999999999999999999999999765443
No 254
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=6.2e-12 Score=85.95 Aligned_cols=55 Identities=13% Similarity=0.137 Sum_probs=48.3
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhh--CCCccCCeEEEEEEccCCCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR--DGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l--~g~~~~gr~i~V~~~~~~~~ 58 (250)
.+||+|++|.|+.. +|||||+|++.++|++|+..| ++..|.|++|.|.+++....
T Consensus 37 ~~fG~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~ 93 (101)
T 2cq1_A 37 LPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKEL 93 (101)
T ss_dssp TTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSC
T ss_pred HhcCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccC
Confidence 47999999998753 899999999999999999977 56789999999999986544
No 255
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=3.6e-12 Score=87.83 Aligned_cols=56 Identities=23% Similarity=0.363 Sum_probs=50.4
Q ss_pred CCcccEEEEEEec---C-CCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 1 MMYGPIVDIDLKI---P-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~-~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
.+|| |.+|.|+. + +.++|||||+|.++++|++|| .|||..|+|+.|.|+++.....
T Consensus 37 ~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 37 RGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQAQD 96 (104)
T ss_dssp TTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCCCC
T ss_pred HHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCCCC
Confidence 4799 99999965 3 788999999999999999999 9999999999999999976544
No 256
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.33 E-value=3.2e-12 Score=87.96 Aligned_cols=56 Identities=23% Similarity=0.445 Sum_probs=50.0
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
.+|| |++|.|+. ++.++|||||+|.++++|++|| .|||..|+|+.|.|.++.....
T Consensus 37 ~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2dng_A 37 KDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGRKQ 95 (103)
T ss_dssp TTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCCCC
T ss_pred HhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCCCC
Confidence 3687 99999964 6788999999999999999999 9999999999999999976543
No 257
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.33 E-value=3.9e-12 Score=100.27 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=69.3
Q ss_pred CCCCCceEEEeCCCC-ccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEE
Q 025583 78 SRRSDYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 156 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 156 (250)
+..+..+|||+|||. .+++++|+++|.+||.|..+.+..+..+ ||||+|.+.++|..|++.|++..+.| ..|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g-~afV~F~~~~~A~~Ai~~l~g~~~~g----~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE-NALVQMADGNQAQLAMSHLNGHKLHG----KPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSC-CEEEEESCHHHHHHHHHHHTTCBCSS----SBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCC-EEEEEECCHHHHHHHHHHhCCCeECC----eEEEE
Confidence 345677999999999 9999999999999999999999887633 89999999999999999999999999 57777
Q ss_pred Eecc
Q 025583 157 REYD 160 (250)
Q Consensus 157 ~~~~ 160 (250)
....
T Consensus 105 ~~a~ 108 (229)
T 2adc_A 105 TLSK 108 (229)
T ss_dssp ECCS
T ss_pred EEec
Confidence 6554
No 258
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.33 E-value=1.2e-12 Score=89.48 Aligned_cols=54 Identities=31% Similarity=0.392 Sum_probs=49.3
Q ss_pred CCcccEEE--------EEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEcc
Q 025583 1 MMYGPIVD--------IDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 54 (250)
Q Consensus 1 ~kfG~I~~--------v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~ 54 (250)
.+||.|.. |.|+. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|++++
T Consensus 35 ~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 35 KQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp TTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEecC
Confidence 47999999 88854 67889999999999999999999999999999999999874
No 259
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=2e-12 Score=90.65 Aligned_cols=55 Identities=24% Similarity=0.375 Sum_probs=50.4
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 56 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~ 56 (250)
.+||+|++|.|+. ++.++|||||+|.+.++|++|| .|||..|+|+.|.|.++...
T Consensus 47 ~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 47 SAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAE 104 (114)
T ss_dssp TTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHHH
T ss_pred HhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCCC
Confidence 4799999999964 5788999999999999999999 99999999999999998754
No 260
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=4.1e-12 Score=85.15 Aligned_cols=52 Identities=33% Similarity=0.622 Sum_probs=48.7
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
+||+|.+|.|+ +|||||+|.++++|++|+..|||..|+|+.|.|+++.....
T Consensus 31 ~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 31 QYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp TSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred hCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 79999999998 79999999999999999999999999999999999976554
No 261
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.4e-12 Score=89.28 Aligned_cols=55 Identities=11% Similarity=0.181 Sum_probs=48.5
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhC--CCccCCeEEEEEEccCCCCC
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD--GYNFDGYRLRVELAHGGRRH 59 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~--g~~~~gr~i~V~~~~~~~~~ 59 (250)
+||+|++|.|+.. +|||||+|+++++|+.|++.|+ +..|.|++|.|.+++.....
T Consensus 39 ~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 39 PFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELK 95 (105)
T ss_dssp HHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSCC
T ss_pred hcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCCC
Confidence 6999999999854 8999999999999999999886 47899999999999765543
No 262
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=4.7e-12 Score=85.24 Aligned_cols=52 Identities=40% Similarity=0.740 Sum_probs=48.4
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
+||+|.+|.|+ ++||||+|.++++|++|+..|||..|.|+.|.|.++.....
T Consensus 33 ~~G~v~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 33 EYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp TTSCCCEEEEC-----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCS
T ss_pred hcCCeEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCC
Confidence 79999999997 67999999999999999999999999999999999976654
No 263
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.32 E-value=2.3e-12 Score=85.91 Aligned_cols=55 Identities=35% Similarity=0.616 Sum_probs=49.2
Q ss_pred CcccEEEEEEec---CCC-CCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCC
Q 025583 2 MYGPIVDIDLKI---PPR-PPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 56 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~-~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~ 56 (250)
+||+|.+|.|+. ++. ++|||||+|.++++|++|+..|||..|+|+.|.|.++.+.
T Consensus 27 ~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (88)
T 4a8x_A 27 TYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAP 85 (88)
T ss_dssp TTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCC
T ss_pred hCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCC
Confidence 799999999964 223 7999999999999999999999999999999999998653
No 264
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=2.3e-12 Score=90.16 Aligned_cols=58 Identities=29% Similarity=0.425 Sum_probs=51.7
Q ss_pred CCcccEE--------EEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 1 MMYGPIV--------DIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 1 ~kfG~I~--------~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
.+||.|. .|.|+. ++.++|||||+|.++++|++||..|||..|.|+.|.|.++.....
T Consensus 37 ~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 37 KQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP 105 (113)
T ss_dssp TTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCCC
T ss_pred HhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCCCC
Confidence 4799999 688854 678899999999999999999999999999999999999976543
No 265
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.7e-12 Score=89.49 Aligned_cols=56 Identities=18% Similarity=0.272 Sum_probs=51.0
Q ss_pred cccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCc-cCCeEEEEEEccCCCC
Q 025583 3 YGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYN-FDGYRLRVELAHGGRR 58 (250)
Q Consensus 3 fG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~-~~gr~i~V~~~~~~~~ 58 (250)
||+|.+|.|+. ++.++|||||+|.+.++|++|+..|||.. |+|+.|.|.++.....
T Consensus 34 ~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~~ 92 (104)
T 2dhg_A 34 YPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKAS 92 (104)
T ss_dssp CTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCCS
T ss_pred CCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCCCc
Confidence 99999999964 77889999999999999999999999999 9999999999876543
No 266
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.32 E-value=3.7e-12 Score=90.69 Aligned_cols=57 Identities=23% Similarity=0.345 Sum_probs=52.1
Q ss_pred CcccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 2 MYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 2 kfG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
+||+|++|.|+. ++.++|||||+|.+.++|++|+..|||..|+|+.|.|+++.....
T Consensus 58 ~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 116 (124)
T 2kt5_A 58 EFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQID 116 (124)
T ss_dssp TTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCTTC
T ss_pred hcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence 799999999965 678899999999999999999999999999999999999976543
No 267
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.32 E-value=7.3e-12 Score=86.91 Aligned_cols=54 Identities=22% Similarity=0.238 Sum_probs=49.0
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCC-----eEEEEEEccCCCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG-----YRLRVELAHGGRR 58 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~g-----r~i~V~~~~~~~~ 58 (250)
.+||+|++|.|+.. |||||+|.++++|++||+.|||..|.| +.|.|+++.....
T Consensus 37 ~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 37 REAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSP 95 (108)
T ss_dssp GGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCSC
T ss_pred HhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCCC
Confidence 37999999999754 999999999999999999999999999 9999999987543
No 268
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=4.1e-11 Score=83.64 Aligned_cols=80 Identities=16% Similarity=0.290 Sum_probs=64.1
Q ss_pred CCCCceEEEeCCCCccC-----------HHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccC
Q 025583 79 RRSDYRVLVTGLPSSAS-----------WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 147 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~-----------~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g 147 (250)
..+..+|+|.||..... +++|+++|.+||.|..+.|......+||||+|.+.++|..|++.|||..|.|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34566899999944332 5799999999999999966433233499999999999999999999999999
Q ss_pred cceeeEEEEEecccC
Q 025583 148 AFSRSYVRVREYDSR 162 (250)
Q Consensus 148 ~~~~~~i~v~~~~~~ 162 (250)
+.|.|......
T Consensus 92 ----r~l~v~~a~~~ 102 (112)
T 2dit_A 92 ----RQITAQAWDGT 102 (112)
T ss_dssp ----EECEEEECCSC
T ss_pred ----cEEEEEEeCCC
Confidence 68888776543
No 269
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.32 E-value=2.7e-12 Score=95.16 Aligned_cols=58 Identities=26% Similarity=0.394 Sum_probs=52.5
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
.+||+|+.|.|+. ++.++|||||+|.++++|++||..||+..|+|+.|.|+++.+...
T Consensus 61 ~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 121 (156)
T 1h2v_Z 61 SKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKE 121 (156)
T ss_dssp GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCCT
T ss_pred HhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 3799999999964 577899999999999999999999999999999999999986544
No 270
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.32 E-value=3.6e-12 Score=86.70 Aligned_cols=51 Identities=25% Similarity=0.472 Sum_probs=47.4
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 56 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~ 56 (250)
.+||+|.+|.|. +|||||+|.+.++|++|+..|||..|+|+.|.|++++..
T Consensus 45 ~~~G~v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 45 SPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp GGGSCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred HhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 379999999995 899999999999999999999999999999999998653
No 271
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.32 E-value=2.8e-12 Score=88.66 Aligned_cols=57 Identities=19% Similarity=0.218 Sum_probs=51.6
Q ss_pred CcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCcc---CCeEEEEEEccCCCC
Q 025583 2 MYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNF---DGYRLRVELAHGGRR 58 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~---~gr~i~V~~~~~~~~ 58 (250)
+||+|.+|.|+. ++.++|||||+|.+.++|++|+..|||..+ .|+.|.|.++.....
T Consensus 36 ~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 36 EFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESR 98 (106)
T ss_dssp HHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCSC
T ss_pred hcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCcccc
Confidence 699999999965 678999999999999999999999999988 899999999976543
No 272
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.31 E-value=5.8e-12 Score=89.64 Aligned_cols=55 Identities=25% Similarity=0.444 Sum_probs=50.4
Q ss_pred CcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 2 MYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
+||+|.+|.|+. ++.++|||||+|.+.++|++|+ .|||..|+|+.|.|.++....
T Consensus 59 ~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~ 116 (124)
T 2jwn_A 59 SCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRTNM 116 (124)
T ss_dssp TTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSCCC
T ss_pred hcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCCCC
Confidence 799999999953 7889999999999999999999 899999999999999987543
No 273
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.31 E-value=1.9e-12 Score=90.06 Aligned_cols=54 Identities=17% Similarity=0.115 Sum_probs=48.4
Q ss_pred Ccc-cEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCC
Q 025583 2 MYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 56 (250)
Q Consensus 2 kfG-~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~ 56 (250)
+|| +|..|.|.. +.++|||||+|.+.++|++||+.|||..|+|+.|.|+++...
T Consensus 51 ~~G~~v~~v~i~~-~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 51 ENSLETTFSSVNT-RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp HHTCCCSEEECSS-CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred HhCCeeEEEEEEc-CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 689 899999853 457999999999999999999999999999999999998654
No 274
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=2.2e-12 Score=88.65 Aligned_cols=53 Identities=15% Similarity=0.302 Sum_probs=48.6
Q ss_pred CcccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccC
Q 025583 2 MYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 55 (250)
Q Consensus 2 kfG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~ 55 (250)
+||+|.+|.|+. .+.++|||||+|.++++|++||. |||..|+|+.|.|.++..
T Consensus 34 ~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 34 DKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp TSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred hcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 799999999975 47789999999999999999997 999999999999998754
No 275
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.31 E-value=4.5e-12 Score=87.17 Aligned_cols=55 Identities=16% Similarity=0.188 Sum_probs=48.0
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCC--ccCCeEEEEEEccCCCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY--NFDGYRLRVELAHGGRR 58 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~--~~~gr~i~V~~~~~~~~ 58 (250)
.+||+|.+|.|+.. +|||||+|++.++|++|++.|++. .|+|++|.|+++.....
T Consensus 37 ~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 37 EKFGTICYVMMMPF---KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRI 93 (104)
T ss_dssp TTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSC
T ss_pred HhCCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCccc
Confidence 47999999998743 899999999999999999988764 59999999999986554
No 276
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.31 E-value=1.6e-11 Score=94.14 Aligned_cols=77 Identities=17% Similarity=0.273 Sum_probs=66.9
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc----EEEEEecCHHHHHHHHHHccCCcccCcceeeEE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 154 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 154 (250)
.....+|||+|||..+++++|+++|..||.|..+.+..+...+ ||||+|.+.++|..|++. ++..+.| ..|
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g----~~l 84 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDG----RVV 84 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETT----EEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECC----EEe
Confidence 3456799999999999999999999999999999999876532 999999999999999985 8899999 677
Q ss_pred EEEecc
Q 025583 155 RVREYD 160 (250)
Q Consensus 155 ~v~~~~ 160 (250)
.|....
T Consensus 85 ~v~~~~ 90 (196)
T 1l3k_A 85 EPKRAV 90 (196)
T ss_dssp EEEECC
T ss_pred eeeccc
Confidence 776543
No 277
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=1.4e-12 Score=89.85 Aligned_cols=56 Identities=36% Similarity=0.631 Sum_probs=51.2
Q ss_pred CcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 2 MYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
+||+|..|.|+. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.++....
T Consensus 31 ~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 89 (104)
T 1p1t_A 31 EVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEK 89 (104)
T ss_dssp TTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTT
T ss_pred hcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCcc
Confidence 799999999963 67789999999999999999999999999999999999987543
No 278
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.30 E-value=9.6e-13 Score=89.69 Aligned_cols=56 Identities=20% Similarity=0.219 Sum_probs=49.3
Q ss_pred CCcccEEEEEEe---cCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCC
Q 025583 1 MMYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 56 (250)
Q Consensus 1 ~kfG~I~~v~i~---~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~ 56 (250)
.+||.|.+|.++ .++.++|||||+|.++++|++|+..|||..|+|+.|.|+++...
T Consensus 37 ~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (98)
T 2cqp_A 37 YGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGP 95 (98)
T ss_dssp TTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCS
T ss_pred HHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Confidence 479999877664 37788999999999999999999999999999999999998643
No 279
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=6.8e-12 Score=87.19 Aligned_cols=54 Identities=22% Similarity=0.410 Sum_probs=49.7
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
+||+|.+|.|+.. +|||||+|.+.++|++|+..|||..|+|+.|.|.++.....
T Consensus 48 ~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 48 PFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp HHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred hcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 6999999999754 89999999999999999999999999999999999976544
No 280
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.30 E-value=2.1e-12 Score=87.68 Aligned_cols=53 Identities=26% Similarity=0.472 Sum_probs=49.1
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
++||+|.+|.|+ +|||||+|.+.++|+.|+..|||..|.|+.|.|+++.....
T Consensus 33 ~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 33 SPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNAR 85 (96)
T ss_dssp TTTCCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC
T ss_pred HhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCC
Confidence 479999999996 89999999999999999999999999999999999976544
No 281
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.29 E-value=3.1e-12 Score=87.51 Aligned_cols=54 Identities=26% Similarity=0.423 Sum_probs=49.1
Q ss_pred CCcccEEEEEEec----CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCC
Q 025583 1 MMYGPIVDIDLKI----PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 56 (250)
Q Consensus 1 ~kfG~I~~v~i~~----~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~ 56 (250)
.+|| |.+|.|+. ++.++|||||+|.+.++|++|+ .|||..|+|+.|.|+++...
T Consensus 41 ~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~~ 98 (100)
T 2j76_E 41 RGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQA 98 (100)
T ss_dssp CSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCCS
T ss_pred HhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccCC
Confidence 4799 99999953 6788999999999999999999 99999999999999998754
No 282
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.29 E-value=6.1e-12 Score=89.44 Aligned_cols=55 Identities=22% Similarity=0.330 Sum_probs=49.0
Q ss_pred CCcccEEEEEEecCCCCCcE-EEEEECChHHHHHHHHhhCCCccCC--eEEEEEEccCCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGY-AFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVELAHGGR 57 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~-aFV~f~~~e~A~~A~~~l~g~~~~g--r~i~V~~~~~~~ 57 (250)
++||+|.+|.|.. +.+|| |||+|.+.++|+.|++.|||..|.| +.|.|++++...
T Consensus 50 s~yG~V~~V~i~~--~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 50 SKFGTVLKIITFT--KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp TTSSCEEEEEEEE--ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred hCcCCEEEEEEEc--CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 5899999999864 23788 9999999999999999999999988 999999998653
No 283
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.29 E-value=1.3e-12 Score=87.54 Aligned_cols=56 Identities=25% Similarity=0.525 Sum_probs=48.1
Q ss_pred CcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 2 MYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
+||+|.+|.|+. ++.++|||||+|.+.+ |++|+..|||..|+|+.|.|+++.....
T Consensus 24 ~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~~ 82 (90)
T 2ki2_A 24 QFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKKS 82 (90)
T ss_dssp HHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-----
T ss_pred hcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 699999999964 5788999999999999 9999999999999999999999976543
No 284
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=7e-12 Score=85.39 Aligned_cols=53 Identities=26% Similarity=0.486 Sum_probs=46.5
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
++||+|++|.|+ +.++|||||+|+++++|+.||..+++ +.|++|.|.++....
T Consensus 39 ~~~G~V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 39 QKYGEVLNLVLS--SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp HTTSCEEEEEEE--SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred HhcCCEEEEEEc--cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 379999999998 57899999999999999999988655 679999999987654
No 285
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.29 E-value=3.8e-11 Score=82.66 Aligned_cols=76 Identities=16% Similarity=0.219 Sum_probs=63.2
Q ss_pred CCceEEEeCCCC-----ccCHHHHHHHhhccCCeeEEEEEecCC-----CcEEEEEecCHHHHHHHHHHccCCcccCcce
Q 025583 81 SDYRVLVTGLPS-----SASWQDLKDHMRRAGDVCFSQVFRDRG-----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 150 (250)
Q Consensus 81 ~~~~l~v~~lp~-----~~~~~~l~~~f~~~g~v~~~~~~~~~~-----~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~ 150 (250)
+..+|+|.||.. ...+++|+++|.+||.|..+.|..++. .+||||+|.+.++|.+|++.|||..+.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G--- 83 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG--- 83 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT---
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC---
Confidence 345899999863 237899999999999999999987642 2399999999999999999999999999
Q ss_pred eeEEEEEecc
Q 025583 151 RSYVRVREYD 160 (250)
Q Consensus 151 ~~~i~v~~~~ 160 (250)
+.|.|....
T Consensus 84 -r~i~v~~a~ 92 (105)
T 2pe8_A 84 -RVVKACFYN 92 (105)
T ss_dssp -EECEEEECC
T ss_pred -cEEEEEEcC
Confidence 677776543
No 286
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.29 E-value=5.6e-12 Score=93.57 Aligned_cols=57 Identities=42% Similarity=0.688 Sum_probs=52.3
Q ss_pred CcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 2 MYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
+||+|.+|.|+. ++.++|||||+|.+.++|+.||..|||..|+|++|.|.++.....
T Consensus 93 ~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 93 KYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp HHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred hcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 699999999964 788999999999999999999999999999999999999986543
No 287
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.29 E-value=3.3e-12 Score=94.51 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=50.1
Q ss_pred Ccc--cEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccC
Q 025583 2 MYG--PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 55 (250)
Q Consensus 2 kfG--~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~ 55 (250)
+|| +|.+|.|+. ++.++|||||+|.+.++|++||..|||..|+|+.|.|.++..
T Consensus 78 ~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~ 136 (156)
T 3n9u_C 78 SIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATR 136 (156)
T ss_dssp HTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCH
T ss_pred HHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCC
Confidence 699 999999953 788999999999999999999999999999999999999853
No 288
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=4.6e-12 Score=88.02 Aligned_cols=53 Identities=11% Similarity=0.184 Sum_probs=47.3
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCcc-----CCeEEEEEEccCCC
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF-----DGYRLRVELAHGGR 57 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~-----~gr~i~V~~~~~~~ 57 (250)
+||+|.+|.|+. .+|||||+|+++++|++|+++|||..| .|.+|.|.++...+
T Consensus 50 ~fG~v~~v~i~~---~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p 107 (114)
T 2cq2_A 50 KCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQ 107 (114)
T ss_dssp HHSCEEEEECCT---TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCC
T ss_pred hcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccCc
Confidence 799999999864 389999999999999999999999988 68999999987543
No 289
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.29 E-value=6.2e-12 Score=85.49 Aligned_cols=53 Identities=28% Similarity=0.519 Sum_probs=48.5
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccC--CeEEEEEEccCCC
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD--GYRLRVELAHGGR 57 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~--gr~i~V~~~~~~~ 57 (250)
+||+|.+|.|... +|||||+|.+.++|++|+..|||..|. |+.|.|++++..+
T Consensus 40 ~~G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 40 RFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp TTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred hcCCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 7999999999743 899999999999999999999999999 9999999997643
No 290
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=4.6e-12 Score=88.91 Aligned_cols=56 Identities=11% Similarity=0.203 Sum_probs=49.4
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCC--CccCCeEEEEEEccCCCCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG--YNFDGYRLRVELAHGGRRH 59 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g--~~~~gr~i~V~~~~~~~~~ 59 (250)
++||+|++|.|+.. +|||||+|++.++|++|++.|++ ..|.|++|.|.+++.....
T Consensus 53 ~~fG~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 53 LPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELK 110 (119)
T ss_dssp TTTSCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSCC
T ss_pred HhcCCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCCC
Confidence 47999999999754 89999999999999999998884 6899999999999866543
No 291
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=2.9e-12 Score=84.88 Aligned_cols=50 Identities=24% Similarity=0.297 Sum_probs=45.4
Q ss_pred Cc-ccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 2 MY-GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 2 kf-G~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
+| |+|++| + .|||||+|.+.++|++|++.|||..|.|++|.|.+++....
T Consensus 36 ~yGG~Vl~V----t---gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd 86 (96)
T 2diu_A 36 NCGGKVLSI----T---GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRE 86 (96)
T ss_dssp TTTCCEEEC----C---TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCC
T ss_pred HcCCeeEEE----e---cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcc
Confidence 69 599998 3 39999999999999999999999999999999999986654
No 292
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.29 E-value=9.6e-12 Score=86.45 Aligned_cols=56 Identities=16% Similarity=0.304 Sum_probs=49.8
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
.+||+|.+|.|+. ++.++|||||+|.+.++|++|+..+ +..|+|+.|.|.++....
T Consensus 47 ~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~~~~ 105 (109)
T 2rs2_A 47 GQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVAFPRR 105 (109)
T ss_dssp TTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEECCCCC
T ss_pred HccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEccCCC
Confidence 4799999999964 6889999999999999999999876 599999999999987644
No 293
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.29 E-value=1.1e-12 Score=88.83 Aligned_cols=54 Identities=17% Similarity=0.160 Sum_probs=48.5
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEcc
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 54 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~ 54 (250)
.+||.|..|.|+. ++.++|||||+|.++++|++|+..|||..|+|+.|.|+++.
T Consensus 37 ~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 37 YGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp TTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred HhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 4799998777743 67889999999999999999999999999999999999875
No 294
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.29 E-value=1.8e-12 Score=93.65 Aligned_cols=58 Identities=41% Similarity=0.665 Sum_probs=52.6
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
++||+|+.|.|+. ++.++|||||+|.+.++|++||..|||..|+|+.|.|.+++....
T Consensus 69 ~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 69 EKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp GGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred HhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 3799999999964 678999999999999999999999999999999999999986543
No 295
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.29 E-value=6.4e-12 Score=85.77 Aligned_cols=54 Identities=26% Similarity=0.327 Sum_probs=49.4
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
.+||+|.+|.|+. .+|||||+|.+.++|++|+..|||..|.|+.|.|.++....
T Consensus 37 ~~~G~i~~v~~~~---~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 37 EKYGKAGEVFIHK---DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp STTCCCSEEEEET---TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred hhcCCeEEEEEec---CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 4799999999974 38999999999999999999999999999999999997654
No 296
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=2e-12 Score=88.24 Aligned_cols=56 Identities=25% Similarity=0.453 Sum_probs=50.7
Q ss_pred CcccEE-EEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeE----EEEEEccCCC
Q 025583 2 MYGPIV-DIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR----LRVELAHGGR 57 (250)
Q Consensus 2 kfG~I~-~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~----i~V~~~~~~~ 57 (250)
+||+|. +|.|+. ++.++|||||+|.++++|++|+..|||..|.|+. |.|.++....
T Consensus 32 ~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~~ 95 (99)
T 2div_A 32 TMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYSG 95 (99)
T ss_dssp HTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCCS
T ss_pred HhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCCC
Confidence 699999 999954 6788999999999999999999999999999999 9999987543
No 297
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.29 E-value=1.7e-12 Score=83.90 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=46.8
Q ss_pred CcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEc
Q 025583 2 MYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 53 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~ 53 (250)
+||+|.+|.|+. ++.++|||||+|.++++|++|+. |||..|+|+.|.|.++
T Consensus 22 ~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 22 QFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp TTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred hcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 799999999964 67889999999999999999996 9999999999999874
No 298
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.28 E-value=3.5e-12 Score=95.46 Aligned_cols=57 Identities=26% Similarity=0.405 Sum_probs=52.0
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
.+||+|..|.|+. ++.++|||||+|.+.++|++||..|||..|+|+.|.|.++....
T Consensus 94 ~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 153 (165)
T 1rk8_A 94 CDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG 153 (165)
T ss_dssp GGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC
T ss_pred hcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 3799999999964 77889999999999999999999999999999999999997654
No 299
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=6.5e-12 Score=84.16 Aligned_cols=51 Identities=33% Similarity=0.563 Sum_probs=47.7
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
+||+|.+|.|+ ++||||+|.+.++|++|+..|||..|+|+.|.|.++....
T Consensus 32 ~~G~v~~~~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 32 RRGRVIECDVV-----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp HHSCEEEEEEC-----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred cCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 69999999998 6799999999999999999999999999999999997654
No 300
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=7.5e-12 Score=88.00 Aligned_cols=57 Identities=18% Similarity=0.328 Sum_probs=51.2
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
.+||+|.+|.|+. ++.++|||||+|.+.++|++||.. |+..|+|+.|.|.++.....
T Consensus 49 ~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~~~ 108 (116)
T 1x4b_A 49 EQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAREE 108 (116)
T ss_dssp TSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSCCC
T ss_pred HhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCCcc
Confidence 4799999999965 578899999999999999999976 99999999999999976644
No 301
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.28 E-value=1.1e-11 Score=96.57 Aligned_cols=73 Identities=12% Similarity=0.134 Sum_probs=63.1
Q ss_pred CceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCC----CcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEE
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 157 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 157 (250)
..+|||+|||..+++++|+++|..||.|..+.+..+.. .+||||+|.+.++|..|++.|++..+.| ..|.|.
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g----~~l~v~ 103 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGG----RNIKVG 103 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-----CCCEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCC----eeEEEe
Confidence 46899999999999999999999999999999987642 2399999999999999999999999999 466664
Q ss_pred e
Q 025583 158 E 158 (250)
Q Consensus 158 ~ 158 (250)
.
T Consensus 104 ~ 104 (216)
T 2qfj_A 104 R 104 (216)
T ss_dssp C
T ss_pred c
Confidence 3
No 302
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=1.5e-11 Score=83.90 Aligned_cols=52 Identities=27% Similarity=0.454 Sum_probs=47.8
Q ss_pred Cc--ccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 2 MY--GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 2 kf--G~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
+| |.|..|.++ +|||||+|.+.++|++|+..|||..|+|+.|.|.+++....
T Consensus 38 ~~g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 38 NIKPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDK 91 (99)
T ss_dssp TTSTTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCCC
T ss_pred hcCCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 68 999999986 78999999999999999999999999999999999976543
No 303
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.28 E-value=4.9e-12 Score=87.76 Aligned_cols=52 Identities=29% Similarity=0.494 Sum_probs=48.5
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
.+||+|.+|.|. +|||||+|.+.++|++|+..|||..|+|+.|.|.++....
T Consensus 53 ~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 53 GPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp TTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC
T ss_pred HhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCC
Confidence 479999999998 8999999999999999999999999999999999987654
No 304
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=4.7e-12 Score=87.41 Aligned_cols=56 Identities=18% Similarity=0.319 Sum_probs=50.6
Q ss_pred CcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 2 MYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
+||+|.+|.|+. ++.++|||||+|.++++|++||.. |+..|+|+.|.|.++.....
T Consensus 39 ~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 39 QYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPRGM 97 (105)
T ss_dssp TTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCCSSC
T ss_pred hcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccCCCC
Confidence 799999999964 678899999999999999999987 99999999999999976554
No 305
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.27 E-value=9.4e-12 Score=88.02 Aligned_cols=54 Identities=26% Similarity=0.285 Sum_probs=47.6
Q ss_pred CCcccEEEEEEecCCCCCcE-EEEEECChHHHHHHHHhhCCCccCC--eEEEEEEccCCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGY-AFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVELAHGGR 57 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~-aFV~f~~~e~A~~A~~~l~g~~~~g--r~i~V~~~~~~~ 57 (250)
++||+|++|.|... .|| |||+|.+.++|+.|+++|||..|.| +.|.|++++...
T Consensus 47 s~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 47 NPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp TTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred HhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 58999999999642 386 9999999999999999999999987 699999997654
No 306
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=1.4e-12 Score=86.48 Aligned_cols=53 Identities=19% Similarity=0.321 Sum_probs=48.0
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEc
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 53 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~ 53 (250)
.+||+|.+|.|+. ++.++|||||+|.++++|++|+..|||..|.|+.|+|.++
T Consensus 27 ~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 27 QPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp TTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred HhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 4799999999964 6788999999999999999999999999999999887654
No 307
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=1.5e-11 Score=85.35 Aligned_cols=57 Identities=23% Similarity=0.255 Sum_probs=50.7
Q ss_pred Cccc-EEEEEEe-c---CCCCCcEEEEEECChHHHHHHHHhhC--CCccCCeEEEEEEccCCCC
Q 025583 2 MYGP-IVDIDLK-I---PPRPPGYAFLEFEDYRDAEDAIRGRD--GYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 2 kfG~-I~~v~i~-~---~~~~~g~aFV~f~~~e~A~~A~~~l~--g~~~~gr~i~V~~~~~~~~ 58 (250)
+||+ |.+|.|+ . ++.++|||||+|.++++|+.|+..|| +..|+|+.|.|.++.....
T Consensus 31 ~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~ 94 (109)
T 2dis_A 31 KVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID 94 (109)
T ss_dssp HHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCS
T ss_pred HhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCCC
Confidence 6898 9999996 3 56889999999999999999999996 5999999999999986654
No 308
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.27 E-value=5.7e-12 Score=92.99 Aligned_cols=56 Identities=21% Similarity=0.246 Sum_probs=49.2
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCC--eEEEEEEccCCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVELAHGGR 57 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~g--r~i~V~~~~~~~ 57 (250)
++||+|++|.|.. +.++|||||+|.+.++|+.|++.|||..|.| +.|.|++++...
T Consensus 68 s~fG~V~~V~i~~-k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 68 SKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp HHHSCEEEEEEEE-SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred HhcCCEEEEEEEe-CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 3799999999853 3468999999999999999999999999965 999999998653
No 309
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.27 E-value=5.8e-12 Score=91.50 Aligned_cols=53 Identities=36% Similarity=0.589 Sum_probs=48.4
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEc
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 53 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~ 53 (250)
.+||+|..|.|+. ++.++|||||+|.++++|++|+..|||..|+|+.|.|.++
T Consensus 85 ~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 85 IPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp GGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred HhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 3799999999964 6789999999999999999999999999999999999875
No 310
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.27 E-value=4.9e-12 Score=89.59 Aligned_cols=54 Identities=24% Similarity=0.525 Sum_probs=49.7
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
.+||+|.+|.|. .++|||||+|.+.++|++|+..|||..|+|+.|.|.++....
T Consensus 59 ~~~G~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 59 SPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp STTCCCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred HccCCEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 479999999996 568999999999999999999999999999999999997654
No 311
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=6.5e-12 Score=88.12 Aligned_cols=56 Identities=21% Similarity=0.349 Sum_probs=49.5
Q ss_pred CcccE----EEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 2 MYGPI----VDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 2 kfG~I----~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
+||.| +.+.+. ++.++|||||+|.+.++|++||..|||..|+|+.|.|.++.....
T Consensus 48 ~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 107 (115)
T 2cpx_A 48 RFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQ 107 (115)
T ss_dssp HHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSC
T ss_pred HhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCCC
Confidence 58998 555554 788999999999999999999999999999999999999986554
No 312
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=1.1e-11 Score=84.93 Aligned_cols=54 Identities=26% Similarity=0.450 Sum_probs=46.9
Q ss_pred CcccEEEEEEe--cCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 2 MYGPIVDIDLK--IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 2 kfG~I~~v~i~--~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
+||+| .|+ .++.++|||||+|.++++|++||..|||..|.|+.|.|+++.....
T Consensus 38 ~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (101)
T 2fc9_A 38 KATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS 93 (101)
T ss_dssp SCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCCC
T ss_pred hCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCCC
Confidence 67877 343 3778899999999999999999999999999999999999976543
No 313
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.26 E-value=5.5e-12 Score=87.54 Aligned_cols=55 Identities=25% Similarity=0.292 Sum_probs=48.0
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhC--CCccCCeEEEEEEccCCCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD--GYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~--g~~~~gr~i~V~~~~~~~~ 58 (250)
.+||+|.+|.|.. .+|||||+|++.++|+.|++.|| +..|.|++|.|++++....
T Consensus 48 ~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~ 104 (112)
T 1x4f_A 48 EPYGKIKNYILMR---MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKK 104 (112)
T ss_dssp TTTSCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSS
T ss_pred HhcCCEEEEEEec---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccccc
Confidence 4799999999973 48999999999999999999886 4669999999999976543
No 314
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.26 E-value=7e-12 Score=87.29 Aligned_cols=52 Identities=27% Similarity=0.566 Sum_probs=47.9
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
.+||+|.+|.|. +|||||+|.+.++|++|+..|||..|+|+.|.|+++....
T Consensus 50 ~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 50 SKYGRVAGCSVH-----KGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp GGGSCCSEEEEE-----TTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCC
T ss_pred HhCCCeEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 379999999994 8999999999999999999999999999999999997543
No 315
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=8e-12 Score=87.53 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=49.4
Q ss_pred CCcccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCcc--------CCeEEEEEEccC
Q 025583 1 MMYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNF--------DGYRLRVELAHG 55 (250)
Q Consensus 1 ~kfG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~--------~gr~i~V~~~~~ 55 (250)
.+||+|.+|.|+. ++.++|||||+|.+.++|++|+..|||..| .+++|.|.++.+
T Consensus 47 ~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 47 KPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGP 111 (114)
T ss_dssp TTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCC
T ss_pred HhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCC
Confidence 4799999999965 677899999999999999999999999999 578899999864
No 316
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.26 E-value=5e-12 Score=85.76 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=48.7
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
.+||+|..| ..++.++|||||+|.++++|++|+..|||..|+|+.|.|.++....
T Consensus 38 ~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 38 EDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp CSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred hhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 368888777 5578889999999999999999999999999999999999987643
No 317
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=7.7e-12 Score=82.79 Aligned_cols=50 Identities=26% Similarity=0.370 Sum_probs=46.4
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhh-CCCccCCeEEEEEEcc
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR-DGYNFDGYRLRVELAH 54 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l-~g~~~~gr~i~V~~~~ 54 (250)
+||+|.+|.|+. .+|||||+|.+.++|++|+..| ||..|+|+.|.|++++
T Consensus 35 ~~G~i~~~~~~~---~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 35 QFGEIRTITVVQ---RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp TTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred hCCCEeEEEEEC---CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 799999999975 3799999999999999999989 9999999999999874
No 318
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.26 E-value=9.8e-12 Score=82.67 Aligned_cols=52 Identities=25% Similarity=0.504 Sum_probs=46.7
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEc
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 53 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~ 53 (250)
.+||+|..|.|+. ++.++|||||+|.++++|++|+ .+++..|+|+.|.|.++
T Consensus 33 ~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 33 TKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp TTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEETTEEEEEEEC
T ss_pred HhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH-HhCCCEECCEEEEEEeC
Confidence 4799999999964 6888999999999999999999 56888999999999875
No 319
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.26 E-value=2.7e-11 Score=91.04 Aligned_cols=65 Identities=22% Similarity=0.250 Sum_probs=59.6
Q ss_pred CceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC------cEEEEEecCHHHHHHHHHHccCCccc
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG------MTGIVDYTSYDDMKYAIRKLDRSEFR 146 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~------~~a~v~f~~~~~a~~a~~~l~g~~~~ 146 (250)
..+|||+|||..+++++|.++|.+||.|..+.+..+..+ +||||+|.+.++|..|++.|++..+.
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 73 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVL 73 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEc
Confidence 468999999999999999999999999999999887654 29999999999999999999998775
No 320
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=7.8e-12 Score=83.91 Aligned_cols=54 Identities=19% Similarity=0.303 Sum_probs=48.8
Q ss_pred CcccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 2 MYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 2 kfG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
+| .|.+|.|+. ++.++|||||+|.++++|++|+. |||..|+|+.|.|.++...+
T Consensus 33 ~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~~ 88 (91)
T 2dgw_A 33 PL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKSGP 88 (91)
T ss_dssp TS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESSCC
T ss_pred hC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCcCC
Confidence 67 899999965 67789999999999999999998 99999999999999987653
No 321
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.25 E-value=7e-12 Score=87.43 Aligned_cols=52 Identities=25% Similarity=0.192 Sum_probs=48.1
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCC
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 56 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~ 56 (250)
+||+|.+|.|+. .+|||||+|.+.++|+.|+..|||..|+|++|.|+++...
T Consensus 33 ~~G~i~~v~i~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 33 RFGSLGRVLLPE---GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp TTSCEEEEECCS---SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred hcCCEEEEEEeC---CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 799999999874 5899999999999999999999999999999999998653
No 322
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.25 E-value=4.1e-12 Score=82.48 Aligned_cols=52 Identities=15% Similarity=0.319 Sum_probs=47.9
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEc
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 53 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~ 53 (250)
.+||+|.+|.|+. ++.++|||||+|.++++|++|+..|+ ..|+|+.|.|+++
T Consensus 22 ~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 22 GQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp TTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred HhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 4799999999964 67889999999999999999999999 9999999999986
No 323
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.25 E-value=3.8e-11 Score=96.46 Aligned_cols=75 Identities=25% Similarity=0.337 Sum_probs=66.3
Q ss_pred CCCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEe
Q 025583 79 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 158 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 158 (250)
....++|||+|||..+++++|.++|..||.|..+.+..+.. ||||+|.+.++|..|+..|+|..+.| ..|.|..
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg--~afV~f~~~~~A~~A~~~l~g~~i~g----~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRG--FGFIRLESRTLAEIAKAELDGTILKS----RPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTT--EEEEECSSHHHHHHHHHHHTTCEETT----EECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCc--EEEEEECCHHHHHHHHHHcCCcEECC----ceeEeee
Confidence 34567999999999999999999999999999999976543 99999999999999999999999999 5666654
Q ss_pred c
Q 025583 159 Y 159 (250)
Q Consensus 159 ~ 159 (250)
.
T Consensus 93 a 93 (261)
T 3sde_A 93 A 93 (261)
T ss_dssp C
T ss_pred c
Confidence 4
No 324
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.25 E-value=4.4e-11 Score=97.07 Aligned_cols=77 Identities=16% Similarity=0.179 Sum_probs=66.4
Q ss_pred CCCCceEEEeCCCCccCHHHHH----HHhhccCCeeEEEEEecCCC-cEEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 79 RRSDYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 79 ~~~~~~l~v~~lp~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~-~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
..+..+|||+|||..+++++|+ ++|..||.|..+.+...... +||||+|.+.++|..|++.|||..|.| +.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 81 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYD----KP 81 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCC----cE
Confidence 4556799999999999999976 89999999999988763322 399999999999999999999999999 67
Q ss_pred EEEEec
Q 025583 154 VRVREY 159 (250)
Q Consensus 154 i~v~~~ 159 (250)
|.|...
T Consensus 82 l~v~~a 87 (282)
T 3pgw_A 82 MRIQYA 87 (282)
T ss_pred EEEEEe
Confidence 777654
No 325
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.24 E-value=1.1e-11 Score=95.32 Aligned_cols=74 Identities=16% Similarity=0.206 Sum_probs=66.3
Q ss_pred CceEEEeCCCC-ccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEecc
Q 025583 82 DYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 160 (250)
Q Consensus 82 ~~~l~v~~lp~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~ 160 (250)
..+|||+|||. .+++++|+++|.+||.|..+.+..+..+ ||||+|.+.++|..|++.|+|..+.| ..|.|....
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g-~afV~f~~~~~a~~A~~~l~~~~~~g----~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE-NALVQMADGNQAQLAMSHLNGHKLHG----KPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSS-CCEEECTTTHHHHHHHHHHTTCCCSS----CCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCC-EEEEEECCHHHHHHHHHHhCCCeecC----eEEEEEEec
Confidence 45999999999 9999999999999999999999877633 89999999999999999999999999 567776554
No 326
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=2.1e-11 Score=83.63 Aligned_cols=53 Identities=19% Similarity=0.331 Sum_probs=45.2
Q ss_pred EEEEEEe---cCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 6 IVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 6 I~~v~i~---~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
+..|.|+ .++.++|||||+|.++++|++||..|||..|+|+.|.|++++....
T Consensus 39 ~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 39 SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 94 (102)
T ss_dssp CSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCCS
T ss_pred CeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCCC
Confidence 3345443 4778899999999999999999999999999999999999986543
No 327
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.23 E-value=5.7e-12 Score=86.32 Aligned_cols=51 Identities=22% Similarity=0.402 Sum_probs=47.5
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccC
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 55 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~ 55 (250)
+||+|.+|.|. .++|||||+|.+.++|++|+..|||..|+|+.|.|.+++.
T Consensus 50 ~~G~i~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 50 NFGFILDFKHY---PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp TTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred hCCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 79999999997 4589999999999999999999999999999999998864
No 328
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=5.8e-12 Score=85.65 Aligned_cols=54 Identities=30% Similarity=0.400 Sum_probs=47.3
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
+||+|. |.|. ++.++|||||+|.+.++|++|+..|||..|+|+.|.|.++...+
T Consensus 42 ~~G~v~-~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 42 ELGSVP-LRLT-WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp HTTCCC-SEEE-EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred hcCCEE-EEEE-cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 689996 5554 35779999999999999999999999999999999999997643
No 329
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=3e-11 Score=82.97 Aligned_cols=56 Identities=16% Similarity=0.399 Sum_probs=49.3
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
.+||+|++|.|+. ++.++|||||+|.+.++|++||. ++..|+|+.|.|.++.....
T Consensus 37 ~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~~~~~ 95 (103)
T 2cqg_A 37 STFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPNSKQS 95 (103)
T ss_dssp GGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCCTTCC
T ss_pred HhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecCCCCc
Confidence 3799999999964 57889999999999999999997 47799999999999987654
No 330
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=2.9e-11 Score=83.22 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=48.7
Q ss_pred CCcccEEE-EEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCC
Q 025583 1 MMYGPIVD-IDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 56 (250)
Q Consensus 1 ~kfG~I~~-v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~ 56 (250)
.+||.|.+ |.|+. +++++|||||+|.++++|++||.. |+..|+|+.|.|.++...
T Consensus 37 ~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~ 94 (104)
T 1wg5_A 37 SGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRA 94 (104)
T ss_dssp TTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECTT
T ss_pred HhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCHH
Confidence 47999998 87754 788999999999999999999976 999999999999988643
No 331
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.21 E-value=1.8e-11 Score=90.00 Aligned_cols=53 Identities=51% Similarity=0.892 Sum_probs=49.0
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCC
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 56 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~ 56 (250)
+||+|.+|.|+.. ++|||||+|.+.++|+.|+..|||..|+|++|.|.++.+.
T Consensus 96 ~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 96 YYGPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHSCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred hhCCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 6999999999754 6899999999999999999999999999999999998764
No 332
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.21 E-value=1.1e-11 Score=97.67 Aligned_cols=54 Identities=13% Similarity=0.159 Sum_probs=50.2
Q ss_pred Ccc--cEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccC
Q 025583 2 MYG--PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 55 (250)
Q Consensus 2 kfG--~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~ 55 (250)
+|| +|++|.|+. +++++|||||+|.+.++|++||..|||..|+|+.|.|.++..
T Consensus 91 ~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 91 SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNK 149 (229)
T ss_dssp TTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCH
T ss_pred HHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCC
Confidence 799 999999964 788999999999999999999999999999999999999863
No 333
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=1.1e-10 Score=81.53 Aligned_cols=70 Identities=13% Similarity=0.223 Sum_probs=62.9
Q ss_pred CCCCCCceEEEeCCCCc-cCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecC-HHHHHHHHHHcc--CCcccCc
Q 025583 77 VSRRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTS-YDDMKYAIRKLD--RSEFRNA 148 (250)
Q Consensus 77 ~~~~~~~~l~v~~lp~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~-~~~a~~a~~~l~--g~~~~g~ 148 (250)
...++++.|+|+||+.. ++.++|+++|.+||+|.+|.+..+.. .|||.|.+ +++|..|+..|+ +..|.|.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 44677889999999999 99999999999999999999988877 79999999 899999999995 6677874
No 334
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=1.8e-11 Score=84.02 Aligned_cols=55 Identities=22% Similarity=0.230 Sum_probs=47.7
Q ss_pred CCcccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 1 MMYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 1 ~kfG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
.+|| |++|.|+. +++++|||||+|.++++|++|| +||+..|+|+.|.|.++....
T Consensus 37 ~~~G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~~~~ 93 (102)
T 1wez_A 37 SPLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLNSTAG 93 (102)
T ss_dssp CSCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEECCCC
T ss_pred HHcC-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEECCCCC
Confidence 3689 45898864 7788999999999999999999 689999999999999886544
No 335
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=3.4e-11 Score=83.46 Aligned_cols=52 Identities=17% Similarity=0.137 Sum_probs=46.8
Q ss_pred CcccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccC
Q 025583 2 MYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 55 (250)
Q Consensus 2 kfG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~ 55 (250)
+| .|.+|.|+. .++++|||||+|.++++|++|| .||+..|+|+.|.|..+..
T Consensus 39 ~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 39 GL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp TS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred cC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 57 799999964 6788999999999999999999 7999999999999988753
No 336
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.82 E-value=1.6e-12 Score=91.40 Aligned_cols=58 Identities=29% Similarity=0.348 Sum_probs=51.5
Q ss_pred CCcccEEE--------EEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 1 MMYGPIVD--------IDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 1 ~kfG~I~~--------v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
.+||.|.. |.|+. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.....
T Consensus 29 ~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 29 KQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRAD 97 (116)
Confidence 47999998 77753 678899999999999999999999999999999999999976543
No 337
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.19 E-value=1.1e-11 Score=90.50 Aligned_cols=56 Identities=27% Similarity=0.403 Sum_probs=49.6
Q ss_pred CcccEEE--------EEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 2 MYGPIVD--------IDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 2 kfG~I~~--------v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
+||.|.. |.+..++.++|||||+|.+.++|++|+..|||..|.|+.|.|.+++...
T Consensus 68 ~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 131 (143)
T 3egn_A 68 RYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSAR 131 (143)
T ss_dssp GGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCSC
T ss_pred HhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 6888765 5556688999999999999999999999999999999999999997643
No 338
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.19 E-value=1.5e-11 Score=92.99 Aligned_cols=56 Identities=23% Similarity=0.353 Sum_probs=51.3
Q ss_pred CcccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 2 MYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 2 kfG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
+||+|+.|.|+. ++.++|||||+|.+.++|++|+..|||..|+|+.|.|+++....
T Consensus 111 ~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~ 168 (177)
T 2f3j_A 111 EFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQI 168 (177)
T ss_dssp HTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGG
T ss_pred hcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 699999999965 67889999999999999999999999999999999999987543
No 339
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.18 E-value=9e-11 Score=87.98 Aligned_cols=72 Identities=21% Similarity=0.354 Sum_probs=61.8
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcc----C-------CeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcc
Q 025583 81 SDYRVLVTGLPSSASWQDLKDHMRRA----G-------DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 149 (250)
Q Consensus 81 ~~~~l~v~~lp~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~ 149 (250)
+..+|||+|||..+++++|+++|.+| | .|..+.+..+.. ||||+|.+.++|..|+ .|++..+.|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g--~afV~f~~~~~A~~A~-~~~~~~~~g-- 77 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKN--FAFLEFRSVDETTQAM-AFDGIIFQG-- 77 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTT--EEEEEESSHHHHHHHG-GGTTCEETT--
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCC--EEEEEeCCHHHHHHHH-HhCCcEecC--
Confidence 34699999999999999999999999 6 677776665533 9999999999999999 899999999
Q ss_pred eeeEEEEEec
Q 025583 150 SRSYVRVREY 159 (250)
Q Consensus 150 ~~~~i~v~~~ 159 (250)
..|.|...
T Consensus 78 --~~i~v~~~ 85 (172)
T 2g4b_A 78 --QSLKIRRP 85 (172)
T ss_dssp --EECEEECC
T ss_pred --ceeeecCC
Confidence 67777643
No 340
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.17 E-value=3.7e-11 Score=84.27 Aligned_cols=51 Identities=24% Similarity=0.279 Sum_probs=44.6
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeE-----EEEEEccC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR-----LRVELAHG 55 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~-----i~V~~~~~ 55 (250)
.+||+|++|.|+.. |||||+|+++++|++||++|||..|+|+. |.|.....
T Consensus 38 ~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 38 REAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp GGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC-
T ss_pred HhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCC
Confidence 37999999999743 99999999999999999999999999998 67766554
No 341
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=1.7e-11 Score=85.94 Aligned_cols=55 Identities=15% Similarity=0.097 Sum_probs=48.8
Q ss_pred CCcccE-EEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCC
Q 025583 1 MMYGPI-VDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 56 (250)
Q Consensus 1 ~kfG~I-~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~ 56 (250)
.+||.| .+|.|+. ++.++|||||+|.++++|++||.. |+..|+|+.|.|.++...
T Consensus 37 ~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~ 94 (114)
T 2cpy_A 37 EGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTLE 94 (114)
T ss_dssp TTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECHH
T ss_pred HhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCHH
Confidence 478999 8888854 788999999999999999999965 999999999999998644
No 342
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.16 E-value=1.4e-10 Score=79.86 Aligned_cols=74 Identities=19% Similarity=0.153 Sum_probs=60.2
Q ss_pred CceEEEeCCC--CccC--------HHHHHHHhhccCCeeEEEEEecCC------CcEEEEEecCHHHHHHHHHHccCCcc
Q 025583 82 DYRVLVTGLP--SSAS--------WQDLKDHMRRAGDVCFSQVFRDRG------GMTGIVDYTSYDDMKYAIRKLDRSEF 145 (250)
Q Consensus 82 ~~~l~v~~lp--~~~~--------~~~l~~~f~~~g~v~~~~~~~~~~------~~~a~v~f~~~~~a~~a~~~l~g~~~ 145 (250)
...|.+.|+- .... .++|+++|.+||.|..+.|..+.. .++|||+|.+.++|.+|++.|||..+
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f 84 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF 84 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4578888873 3332 368999999999999999987643 23999999999999999999999999
Q ss_pred cCcceeeEEEEEec
Q 025583 146 RNAFSRSYVRVREY 159 (250)
Q Consensus 146 ~g~~~~~~i~v~~~ 159 (250)
.| +.|.|...
T Consensus 85 ~G----R~i~v~~~ 94 (105)
T 3v4m_A 85 AN----RVVVTKYC 94 (105)
T ss_dssp TT----EECEEEEE
T ss_pred CC----CEEEEEEe
Confidence 99 67776543
No 343
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.16 E-value=5.9e-11 Score=98.17 Aligned_cols=66 Identities=17% Similarity=0.143 Sum_probs=57.7
Q ss_pred CCCCceEEEeC--CCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCccc
Q 025583 79 RRSDYRVLVTG--LPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 146 (250)
Q Consensus 79 ~~~~~~l~v~~--lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~ 146 (250)
..+..+|||+| |+..+++++|+++|.+||+|..+.+... .+||||+|.+.++|++|++.|||.++.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~--kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN--KPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTT--CSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 34556999998 5788999999999999999988877553 349999999999999999999999884
No 344
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=4.9e-12 Score=90.07 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=47.0
Q ss_pred CCcccEEEEE-Ee--cCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccC
Q 025583 1 MMYGPIVDID-LK--IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 55 (250)
Q Consensus 1 ~kfG~I~~v~-i~--~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~ 55 (250)
.+||.|.+|. |. .++.++|||||+|.++++|++||. |||..|+|+.|.|.++..
T Consensus 47 ~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~ 103 (124)
T 1wel_A 47 KKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITK 103 (124)
T ss_dssp CSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECH
T ss_pred HhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCH
Confidence 4799998743 33 378889999999999999999998 999999999999999854
No 345
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.16 E-value=5.9e-12 Score=90.51 Aligned_cols=57 Identities=21% Similarity=0.427 Sum_probs=50.6
Q ss_pred CCcccEEE--EEEec---CCCCCcEEEEEECChHHHHHHHHhhCCC----ccCCeEEEEEEccCCCC
Q 025583 1 MMYGPIVD--IDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGY----NFDGYRLRVELAHGGRR 58 (250)
Q Consensus 1 ~kfG~I~~--v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~----~~~gr~i~V~~~~~~~~ 58 (250)
.+||+|.. |+|+. ++.++|||||+|.+. +|++|+..|||. .|+|+.|.|.++.+...
T Consensus 45 ~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 45 APYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSKR 110 (131)
T ss_dssp GGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSCC
T ss_pred HHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCCC
Confidence 37999966 88854 788999999999999 999999999999 99999999999976543
No 346
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.15 E-value=3.1e-11 Score=80.46 Aligned_cols=51 Identities=25% Similarity=0.291 Sum_probs=46.4
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 55 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~ 55 (250)
.+| +|.+|.|. .++|||||+|.++++|++|+..|||..|+|+.|.|+++..
T Consensus 27 ~~~-~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 27 KDY-DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CSS-CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred hhC-CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 367 89999885 5689999999999999999999999999999999999854
No 347
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.15 E-value=1.7e-11 Score=86.37 Aligned_cols=54 Identities=20% Similarity=0.248 Sum_probs=48.1
Q ss_pred CCccc---EEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccC
Q 025583 1 MMYGP---IVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 55 (250)
Q Consensus 1 ~kfG~---I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~ 55 (250)
.+||. |.+|.|+. .++++|||||+|.++++|++||. |||..|+|+.|.|.++..
T Consensus 39 ~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~ 97 (118)
T 2db1_A 39 SDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSHR 97 (118)
T ss_dssp TTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEECH
T ss_pred HHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCH
Confidence 36888 89999864 57889999999999999999997 999999999999999853
No 348
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=3.1e-11 Score=81.30 Aligned_cols=53 Identities=23% Similarity=0.286 Sum_probs=46.3
Q ss_pred Cccc-EEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCC-CccCCeEEEEEEccCCCC
Q 025583 2 MYGP-IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG-YNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 2 kfG~-I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g-~~~~gr~i~V~~~~~~~~ 58 (250)
+||+ |..+.|+ ++|||||+|.++++|++|+..||| ..|+|+.|.|+++.....
T Consensus 31 ~~G~vv~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~ 85 (93)
T 2cqh_A 31 DRKLPLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKL 85 (93)
T ss_dssp HTTCCCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCC
T ss_pred HcCCceEEEEEc----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCccc
Confidence 6898 6666664 389999999999999999999999 999999999999976543
No 349
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.14 E-value=2.3e-10 Score=80.28 Aligned_cols=75 Identities=13% Similarity=0.240 Sum_probs=61.2
Q ss_pred CCceEEEeCCCCc-----cCHHHHHHHhhccCCeeEEEEEecCCC--------cEEEEEecCHHHHHHHHHHccCCcccC
Q 025583 81 SDYRVLVTGLPSS-----ASWQDLKDHMRRAGDVCFSQVFRDRGG--------MTGIVDYTSYDDMKYAIRKLDRSEFRN 147 (250)
Q Consensus 81 ~~~~l~v~~lp~~-----~~~~~l~~~f~~~g~v~~~~~~~~~~~--------~~a~v~f~~~~~a~~a~~~l~g~~~~g 147 (250)
+..+|++.|+-.. --+++|+++|.+||.|..+.|..+..+ +++||+|.+.++|.+|++.|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 3457888887432 236899999999999999999876432 399999999999999999999999999
Q ss_pred cceeeEEEEEec
Q 025583 148 AFSRSYVRVREY 159 (250)
Q Consensus 148 ~~~~~~i~v~~~ 159 (250)
+.|.|...
T Consensus 99 ----R~i~v~~~ 106 (118)
T 3ue2_A 99 ----RKVVAEVY 106 (118)
T ss_dssp ----EECEEEEE
T ss_pred ----cEEEEEEc
Confidence 67766543
No 350
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.14 E-value=1.6e-10 Score=88.60 Aligned_cols=72 Identities=19% Similarity=0.334 Sum_probs=61.2
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcc----C-------CeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcce
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRRA----G-------DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 150 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~ 150 (250)
..+|||+|||..+++++|.++|.+| | .|..+.+.... +||||+|.+.++|..|+ .|||..+.|
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~--g~afV~F~~~~~A~~Al-~l~g~~~~g--- 77 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK--NFAFLEFRSVDETTQAM-AFDGIIFQG--- 77 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTT--TEEEEEESCSHHHHHHG-GGTTEEETT---
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCC--CEEEEEeCCHHHHHHHH-HhcCCEEcC---
Confidence 4599999999999999999999999 5 56666665443 39999999999999999 899999999
Q ss_pred eeEEEEEecc
Q 025583 151 RSYVRVREYD 160 (250)
Q Consensus 151 ~~~i~v~~~~ 160 (250)
..|.|....
T Consensus 78 -~~i~v~~~~ 86 (198)
T 2yh0_A 78 -QSLKIRRPH 86 (198)
T ss_dssp -EEEEEECCC
T ss_pred -ceEEEeCCC
Confidence 688886543
No 351
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.14 E-value=8.6e-12 Score=85.41 Aligned_cols=55 Identities=18% Similarity=0.294 Sum_probs=46.8
Q ss_pred CcccEEEEEE--ecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 2 MYGPIVDIDL--KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 2 kfG~I~~v~i--~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
+||.|..+.| ..++.++|||||+|.+.++|++||+ |||..|.|+.|.|.++....
T Consensus 40 ~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~~ 96 (101)
T 1fj7_A 40 ELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRD 96 (101)
T ss_dssp HHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSCCC
T ss_pred HhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCCCC
Confidence 5788877322 2367899999999999999999997 99999999999999997654
No 352
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.13 E-value=1.4e-11 Score=79.50 Aligned_cols=51 Identities=16% Similarity=0.397 Sum_probs=46.0
Q ss_pred CcccEEEEEEec---CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEc
Q 025583 2 MYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 53 (250)
Q Consensus 2 kfG~I~~v~i~~---~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~ 53 (250)
+||+|.+|.|+. ++.++|||||+|.++++|++|+. +++..|+|+.|.|.++
T Consensus 22 ~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 22 GFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp HHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred hcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 699999999964 57889999999999999999996 5999999999999874
No 353
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.13 E-value=3.3e-10 Score=78.98 Aligned_cols=76 Identities=12% Similarity=0.056 Sum_probs=60.7
Q ss_pred CCCceEEEeCCCCcc----------CHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcc
Q 025583 80 RSDYRVLVTGLPSSA----------SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 149 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~----------~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~ 149 (250)
.+...|.+.|+-... -+++|+++|.+||.|..+.+..+...++|||+|.+.++|.+|++.|||..++|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G-- 82 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAG-- 82 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETT--
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECC--
Confidence 344577777764322 23588999999999999998776544599999999999999999999999999
Q ss_pred eeeEEEEEec
Q 025583 150 SRSYVRVREY 159 (250)
Q Consensus 150 ~~~~i~v~~~ 159 (250)
+.|.|...
T Consensus 83 --R~i~v~~~ 90 (114)
T 3s6e_A 83 --KMITAAYV 90 (114)
T ss_dssp --EECEEEEE
T ss_pred --EEEEEEEE
Confidence 67777644
No 354
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.13 E-value=9.2e-11 Score=87.48 Aligned_cols=64 Identities=11% Similarity=0.276 Sum_probs=56.1
Q ss_pred CceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC----cEEEEEecCHHHHHHHHHHccCCcccC
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRN 147 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~a~v~f~~~~~a~~a~~~l~g~~~~g 147 (250)
..+|||+|||..+++++|+++|.+||.|..+.+..+... +||||+|.+.++|..|++. +..+.|
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g 70 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDG 70 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCC
Confidence 469999999999999999999999999999999877532 2999999999999999985 445666
No 355
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.12 E-value=2.3e-11 Score=87.72 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=47.9
Q ss_pred CCccc---EEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEcc
Q 025583 1 MMYGP---IVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 54 (250)
Q Consensus 1 ~kfG~---I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~ 54 (250)
++||. |.+|.|+. .++++|||||+|.++++|++||+ |||..|+|+.|.|.++.
T Consensus 66 ~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~ 123 (136)
T 2hgl_A 66 SDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSH 123 (136)
T ss_dssp TTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECC
T ss_pred HHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECC
Confidence 46898 88999864 57889999999999999999997 99999999999999875
No 356
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.11 E-value=3.7e-11 Score=84.19 Aligned_cols=55 Identities=22% Similarity=0.341 Sum_probs=46.7
Q ss_pred CCcccEEEEEEec---CCCCCcEEEEEECC----hHH----HHHHHH--hhCCCccCCeEEEEEEccC
Q 025583 1 MMYGPIVDIDLKI---PPRPPGYAFLEFED----YRD----AEDAIR--GRDGYNFDGYRLRVELAHG 55 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~~~~~g~aFV~f~~----~e~----A~~A~~--~l~g~~~~gr~i~V~~~~~ 55 (250)
++||+|.+|.+.. ||.++|||||+|.+ +++ |.+|+. +|||..|+|+.|.|.+...
T Consensus 28 s~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 28 KKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNKH 95 (136)
T ss_dssp HTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECCT
T ss_pred HhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECcc
Confidence 3799999999954 88999999999996 444 889988 7899999999999998753
No 357
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=1.7e-10 Score=78.05 Aligned_cols=54 Identities=13% Similarity=0.343 Sum_probs=46.5
Q ss_pred CcccEEEEE-EecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCC
Q 025583 2 MYGPIVDID-LKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 56 (250)
Q Consensus 2 kfG~I~~v~-i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~ 56 (250)
+||+|.+|. |+.. ...|.|||+|.+.++|++|+..|||..|+|+.|.|.++...
T Consensus 38 ~~G~v~~~~~i~~~-~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 38 QYGVVESCEQVNTD-SETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp HHSCEEEEEEECCS-SSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred hcCCeEEEEEeecC-CCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 699999994 6542 23456999999999999999999999999999999999765
No 358
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.11 E-value=6.2e-11 Score=89.19 Aligned_cols=79 Identities=15% Similarity=0.186 Sum_probs=62.6
Q ss_pred CCCCCceEEEeCCCCccCHHHHHHHhhccCCeeEE---EEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEE
Q 025583 78 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFS---QVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 154 (250)
Q Consensus 78 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~---~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 154 (250)
.....++|||+|||..+++++|+++|.+||.+..+ ........+||||+|.+.++|..|+ .|++..+.| ..|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l 83 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFG----NEI 83 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETT----EEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCC----eEE
Confidence 44567899999999999999999999999864431 1122222339999999999999999 599999999 788
Q ss_pred EEEeccc
Q 025583 155 RVREYDS 161 (250)
Q Consensus 155 ~v~~~~~ 161 (250)
.|.....
T Consensus 84 ~v~~~~~ 90 (175)
T 1fje_B 84 KLEKPKG 90 (175)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 8876543
No 359
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.09 E-value=7.9e-11 Score=80.95 Aligned_cols=67 Identities=21% Similarity=0.293 Sum_probs=55.5
Q ss_pred EeCCCCccCHHHHHHHh------------hccCCeeEEEEEecCCC---cEEEEEecCHHHHHHHHHHccCCcccCccee
Q 025583 87 VTGLPSSASWQDLKDHM------------RRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 151 (250)
Q Consensus 87 v~~lp~~~~~~~l~~~f------------~~~g~v~~~~~~~~~~~---~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~ 151 (250)
+.+||..+++++|+++| .+||.|..+.+..+..+ +||||+|.+.++|.+|++.|||..++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~G---- 95 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNG---- 95 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETT----
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECC----
Confidence 56777777777777666 99999999999877543 299999999999999999999999999
Q ss_pred eEEEEE
Q 025583 152 SYVRVR 157 (250)
Q Consensus 152 ~~i~v~ 157 (250)
+.|.|.
T Consensus 96 r~i~v~ 101 (104)
T 1jmt_A 96 QPIHAE 101 (104)
T ss_dssp EECCEE
T ss_pred EEEEEE
Confidence 566654
No 360
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.09 E-value=2.5e-11 Score=87.83 Aligned_cols=55 Identities=22% Similarity=0.225 Sum_probs=48.8
Q ss_pred CCcccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 1 MMYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 1 ~kfG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
.+|| |++|.|+. +++++|||||+|+++++|++|| +||+..|+|+.|.|.++....
T Consensus 68 ~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 68 SPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp CSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred HhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 4799 77999864 6788999999999999999999 899999999999999987554
No 361
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=1.8e-10 Score=77.65 Aligned_cols=53 Identities=21% Similarity=0.403 Sum_probs=44.3
Q ss_pred CCcccEEEEEEec-CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 1 MMYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 1 ~kfG~I~~v~i~~-~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
.+||+|.+|.+.. ++. ||||+|.++++|++|+. |||..|+|+.|.|.++....
T Consensus 30 ~~~G~v~~v~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 30 LAFGPVASVVMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp GGTSCEEEEEECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred HhcCCeEEEEEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 3799999983322 332 99999999999999998 99999999999999876543
No 362
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=2.2e-10 Score=75.13 Aligned_cols=48 Identities=13% Similarity=0.230 Sum_probs=43.9
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccC
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 55 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~ 55 (250)
+||+|..|+|.. +.+||+|.+.++|.+|+. |||..|+|+.|+|.++.+
T Consensus 38 ~~G~Vi~vr~~~-----d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 38 SFGEVILIRFVE-----DKMWVTFLEGSSALNVLS-LNGKELLNRTITIALKSP 85 (91)
T ss_dssp TTCCEEEEEECS-----SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCC
T ss_pred hCCCeEEEEEec-----CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCC
Confidence 799999999984 459999999999999997 999999999999999864
No 363
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.08 E-value=1.2e-10 Score=91.54 Aligned_cols=54 Identities=22% Similarity=0.219 Sum_probs=47.6
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCcc------------CCeEEEEEEccCCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF------------DGYRLRVELAHGGR 57 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~------------~gr~i~V~~~~~~~ 57 (250)
++||+|++|.|+. .+|||||+|.+.++|+.|+++|+|..| .|+.|.|.++...+
T Consensus 165 ~~fG~I~~v~v~~---~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 165 SRLGDIDRIRYVE---SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp HTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred HccCCEEEEEEEC---CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCC
Confidence 3799999999974 489999999999999999999999999 89999999997654
No 364
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.07 E-value=3.7e-11 Score=83.14 Aligned_cols=53 Identities=15% Similarity=0.153 Sum_probs=47.5
Q ss_pred Cccc---EEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccC
Q 025583 2 MYGP---IVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 55 (250)
Q Consensus 2 kfG~---I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~ 55 (250)
+||. |.+|.|+. .+.++|||||+|.++++|++||. ||+..|+|+.|.|.++..
T Consensus 34 ~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~ 91 (107)
T 2lmi_A 34 DCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEINN 91 (107)
T ss_dssp TSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECCH
T ss_pred hcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECCH
Confidence 5777 89999964 57899999999999999999997 999999999999999864
No 365
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.06 E-value=7.7e-11 Score=80.76 Aligned_cols=55 Identities=22% Similarity=0.449 Sum_probs=49.0
Q ss_pred CCcccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCC
Q 025583 1 MMYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 57 (250)
Q Consensus 1 ~kfG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~ 57 (250)
.+||+|.+|.|+. ++.++|||||+|.+.++|++|+. ++..|+|+.|.|.++....
T Consensus 31 ~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~~~ 87 (102)
T 2xs2_A 31 ARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIRKQ 87 (102)
T ss_dssp GGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEECC
T ss_pred HhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCcCc
Confidence 3799999999965 67789999999999999999996 9999999999999987543
No 366
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=4.7e-09 Score=71.30 Aligned_cols=64 Identities=11% Similarity=0.153 Sum_probs=51.4
Q ss_pred CccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEecccC
Q 025583 92 SSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 162 (250)
Q Consensus 92 ~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 162 (250)
..+++++|+++|.+||.|..+.|.... .+||||+|.+.++|..|++.+++ +.| ..|.|......
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~-rGfaFVeF~~~~~A~~Ai~~~~~--~~g----~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKK-PGTAVVEFATVKAAELAVQNEVG--LVD----NPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSS-SSEEEEEESCHHHHHHHHHTCCB--CSS----SBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCC-CCEEEEEECCHHHHHHHHHhcCC--CCC----CeEEEEEccCC
Confidence 468999999999999999999988432 23999999999999999998655 456 56777665443
No 367
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.01 E-value=4e-10 Score=74.68 Aligned_cols=44 Identities=27% Similarity=0.609 Sum_probs=40.9
Q ss_pred cEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEE
Q 025583 5 PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 52 (250)
Q Consensus 5 ~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~ 52 (250)
+|.+|.|... +|||||+|.++++|++|+ .|||..|+|+.|.|+.
T Consensus 43 ~v~~~~~~~~---kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 43 PVLAVQINQD---KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp SEEEEEECSS---SSEEEEEESSHHHHHHHG-GGTTCEETTEECEEEC
T ss_pred cceEEEecCC---CcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEEeC
Confidence 9999998743 899999999999999999 9999999999999974
No 368
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.00 E-value=4.8e-10 Score=85.84 Aligned_cols=54 Identities=13% Similarity=0.237 Sum_probs=47.5
Q ss_pred CCcccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccC
Q 025583 1 MMYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 55 (250)
Q Consensus 1 ~kfG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~ 55 (250)
++||+|..|.|+. ++.++|||||+|+++++|++|+..++ ..|+|+.|.|.+...
T Consensus 131 ~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 131 EDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp TTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred hcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 4799999999965 67789999999999999999997654 589999999998764
No 369
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.99 E-value=3.3e-10 Score=80.37 Aligned_cols=52 Identities=23% Similarity=0.243 Sum_probs=44.9
Q ss_pred CCcccEE--EEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEcc
Q 025583 1 MMYGPIV--DIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 54 (250)
Q Consensus 1 ~kfG~I~--~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~ 54 (250)
.+| .|+ +|.|+. .++++|||||+|.++++|++||. +++..|+|+.|.|..+.
T Consensus 64 ~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~a~ 119 (126)
T 2hgm_A 64 SGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFKSS 119 (126)
T ss_dssp TTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEEEC
T ss_pred hcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEECC
Confidence 367 577 888864 57899999999999999999996 57899999999998875
No 370
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=1.1e-10 Score=82.56 Aligned_cols=52 Identities=23% Similarity=0.201 Sum_probs=45.5
Q ss_pred CcccE----EEEEEec--CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEcc
Q 025583 2 MYGPI----VDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 54 (250)
Q Consensus 2 kfG~I----~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~ 54 (250)
+||+| .+|.|+. +++++|||||+|.++++|++||.. |+..|+|+.|.|..+.
T Consensus 46 ~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~ 103 (123)
T 2dha_A 46 QHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRST 103 (123)
T ss_dssp TTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEEC
T ss_pred hhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEECC
Confidence 57765 6888864 788899999999999999999975 9999999999998875
No 371
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.97 E-value=6.3e-10 Score=87.14 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=49.1
Q ss_pred CCcccEEEEEEec-------CCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEcc
Q 025583 1 MMYGPIVDIDLKI-------PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 54 (250)
Q Consensus 1 ~kfG~I~~v~i~~-------~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~ 54 (250)
++||+|.+|.|+. ++.++||+||+|.+.++|++|+..|||..|+|++|.|.+..
T Consensus 151 ~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 151 GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp TTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 4899999999953 34788999999999999999999999999999999999974
No 372
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.96 E-value=1.3e-09 Score=72.61 Aligned_cols=50 Identities=24% Similarity=0.381 Sum_probs=40.3
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCc--cCCeEEEEEEccCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYN--FDGYRLRVELAHGG 56 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~--~~gr~i~V~~~~~~ 56 (250)
++||+|.+|.|+. .++|||||+|.++++|++ |+|.. +.|+.|.|.++.+.
T Consensus 33 ~~~G~i~~v~i~~--~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 33 CQYGEVVDVFIPK--PFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp TTTSCEEEEECCS--SCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC--
T ss_pred hccCCEEEEEEee--CCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCC
Confidence 4899999999975 379999999999999983 45544 45999999998754
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.89 E-value=7.1e-09 Score=67.97 Aligned_cols=70 Identities=17% Similarity=0.154 Sum_probs=56.5
Q ss_pred CceEEEeCCCC----ccC----HHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeE
Q 025583 82 DYRVLVTGLPS----SAS----WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 153 (250)
Q Consensus 82 ~~~l~v~~lp~----~~~----~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 153 (250)
.-+|+|.-++. ..- ..+|.+.|.+||+|+.+.+..+ .+||+|.+.+.|.+|++ |||..+.| +.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d----~~fVtF~d~~sAlaAi~-mnG~~v~G----r~ 77 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED----KMWVTFLEGSSALNVLS-LNGKELLN----RT 77 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS----SEEEEESSHHHHHHGGG-GTTCEETT----EE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC----CEEEEECChHHHHHHHh-cCCeEeCC----eE
Confidence 34666665542 121 2679999999999999999887 49999999999999998 99999999 78
Q ss_pred EEEEecc
Q 025583 154 VRVREYD 160 (250)
Q Consensus 154 i~v~~~~ 160 (250)
|+|....
T Consensus 78 LkV~lkt 84 (91)
T 2dnr_A 78 ITIALKS 84 (91)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 8887654
No 374
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=1.9e-09 Score=75.27 Aligned_cols=50 Identities=28% Similarity=0.403 Sum_probs=40.9
Q ss_pred CCcccEEEEEEec---C---CCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEc
Q 025583 1 MMYGPIVDIDLKI---P---PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 53 (250)
Q Consensus 1 ~kfG~I~~v~i~~---~---~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~ 53 (250)
.+||+|. +.++. + +.++|||||+|.++++|++||+.|+ .|+|+.|.|..+
T Consensus 30 ~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~~~ 85 (114)
T 2dnl_A 30 RRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCVSS 85 (114)
T ss_dssp TTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEECC
T ss_pred HhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEeccC
Confidence 4799999 77743 3 6889999999999999999999985 367777777654
No 375
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=1.8e-09 Score=71.78 Aligned_cols=54 Identities=20% Similarity=0.358 Sum_probs=42.8
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 58 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~ 58 (250)
.+||+|.+|.|+.. ++|||||+|.++++|++|+. ....+.|..|.|.++.+...
T Consensus 27 ~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 27 SQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp TTTSCCCEEECCSS--CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCCCC
T ss_pred HHcCCeeEEEEecC--CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCCCC
Confidence 47999999999743 79999999999999986542 13456899999999876543
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.79 E-value=5.9e-09 Score=68.71 Aligned_cols=46 Identities=24% Similarity=0.442 Sum_probs=42.0
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEc
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 53 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~ 53 (250)
+||+|+.|+|.. .-+||+|.+.++|.+||. |||..|+|+.|+|.+.
T Consensus 47 ~~G~Vilvr~v~-----d~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k 92 (95)
T 1ufw_A 47 SYGTIVLVRINQ-----GQMLVTFADSHSALSVLD-VDGMKVKGRAVKISGP 92 (95)
T ss_dssp HHSCCSEEEEET-----TEEEEECSCSHHHHHHHH-GGGSEETTEEEEEECC
T ss_pred HCCCEEEEEEec-----CcEEEEEcChHHHHHHHh-cCCeeeCCeEEEEecc
Confidence 699999999984 349999999999999997 9999999999999874
No 377
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.77 E-value=8.2e-09 Score=85.38 Aligned_cols=51 Identities=14% Similarity=0.215 Sum_probs=43.7
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccC---Ce--EEEEEEcc
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD---GY--RLRVELAH 54 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~---gr--~i~V~~~~ 54 (250)
++||+|.+|.|+. .+|||||+|.+.++|++|+++|||..+. |+ +|.|.++.
T Consensus 42 ~~~G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 42 EKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp HTTSCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred HhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 3799999998864 5899999999999999999999998883 45 67888874
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=3.2e-08 Score=65.22 Aligned_cols=71 Identities=11% Similarity=0.188 Sum_probs=57.8
Q ss_pred CCCceEEEeCCCCc-----c-C---HHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcce
Q 025583 80 RSDYRVLVTGLPSS-----A-S---WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 150 (250)
Q Consensus 80 ~~~~~l~v~~lp~~-----~-~---~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~ 150 (250)
++.-+|+|.-++.. . . ..+|.+.|.+||+|+.+++..+ .+||+|.+.+.|.+||+ |||..+.|
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d----~~fVtF~d~~sAl~AI~-ldG~~v~G--- 84 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG----QMLVTFADSHSALSVLD-VDGMKVKG--- 84 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT----EEEEECSCSHHHHHHHH-GGGSEETT---
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC----cEEEEEcChHHHHHHHh-cCCeeeCC---
Confidence 34457888776532 1 1 2579999999999999999888 59999999999999998 99999999
Q ss_pred eeEEEEEec
Q 025583 151 RSYVRVREY 159 (250)
Q Consensus 151 ~~~i~v~~~ 159 (250)
+.|+|...
T Consensus 85 -r~L~V~~k 92 (95)
T 1ufw_A 85 -RAVKISGP 92 (95)
T ss_dssp -EEEEEECC
T ss_pred -eEEEEecc
Confidence 67877643
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.58 E-value=3.7e-07 Score=61.35 Aligned_cols=70 Identities=13% Similarity=0.115 Sum_probs=63.7
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcc-----CCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEE
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRRA-----GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 156 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~~-----g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 156 (250)
..+|-+-+||..++...|..++.++ |.+..+.+..+.. -|+|+|.+...|.+|.-.|+|.+|.| +.|.+
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~--GAivef~d~~~AgKasLaL~G~ef~g----r~Lr~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN--GAIIIFRDSKFAAKMLMILNGSQFQG----KVIRS 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT--EEEEECSCHHHHHHHHHHHSSEEETT----EEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC--ceEEEEccchhhHHHHhhcCCeeecC----eEEEe
Confidence 4588999999999999999999999 9999999988877 49999999999999999999999999 67766
Q ss_pred E
Q 025583 157 R 157 (250)
Q Consensus 157 ~ 157 (250)
-
T Consensus 95 g 95 (117)
T 2l9w_A 95 G 95 (117)
T ss_dssp E
T ss_pred c
Confidence 3
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.32 E-value=1.2e-06 Score=68.37 Aligned_cols=62 Identities=16% Similarity=0.268 Sum_probs=51.5
Q ss_pred cCHHHHHHHhhccCCeeEEEEEecCCC--------cEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEec
Q 025583 94 ASWQDLKDHMRRAGDVCFSQVFRDRGG--------MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 159 (250)
Q Consensus 94 ~~~~~l~~~f~~~g~v~~~~~~~~~~~--------~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~ 159 (250)
-.+++|.+.|.+||.|..+.+..+..+ +++||+|.+.++|.+|+..|||..+.| +.|.+.-.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g----r~i~~~~~ 210 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG----RKVVAEVY 210 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS----SBCEEEEC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC----eEEEEEEc
Confidence 356789999999999999998755332 299999999999999999999999999 45655543
No 381
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.29 E-value=1.6e-06 Score=60.52 Aligned_cols=52 Identities=15% Similarity=0.189 Sum_probs=44.6
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECC-hHHHHHHHHhhC--CCccCCeEEEEEEccC
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFED-YRDAEDAIRGRD--GYNFDGYRLRVELAHG 55 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~-~e~A~~A~~~l~--g~~~~gr~i~V~~~~~ 55 (250)
++||+|..|+|... .-+|||.|.+ +++|..|+.+|| |..|+|..+.+++..+
T Consensus 41 ~~~G~V~~Vd~~~g---~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~G 95 (121)
T 1owx_A 41 SNHGEIKWIDFVRG---AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEG 95 (121)
T ss_dssp CSSCCEEEEECCTT---CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCH
T ss_pred HhcCCEEEEEEecC---CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCC
Confidence 47999999999754 3379999999 799999999994 7899999999988753
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.00015 Score=48.76 Aligned_cols=47 Identities=23% Similarity=0.167 Sum_probs=41.3
Q ss_pred ccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEc
Q 025583 4 GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 53 (250)
Q Consensus 4 G~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~ 53 (250)
|.|+.|.|.-+ -+=|+|+|.+...|-+|.-+|||..|+|+.|.|...
T Consensus 51 g~i~KI~L~pD---H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 51 KDIRKILLVSD---FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp TTCSEEEEETT---TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred cceeEEEEecC---CCceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 88999988643 456999999999999999999999999999999754
No 383
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.51 E-value=0.00092 Score=44.02 Aligned_cols=55 Identities=16% Similarity=0.208 Sum_probs=44.8
Q ss_pred CceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHcc
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 141 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~ 141 (250)
...++| ++|......||.++|..||.|.-..|... -|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~WidDT----sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDDT----SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEETT----EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEcCC----eEEEEecCHHHHHHHHHhcc
Confidence 345556 99999999999999999996655444422 69999999999999998764
No 384
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.47 E-value=0.0014 Score=42.99 Aligned_cols=69 Identities=13% Similarity=0.342 Sum_probs=56.7
Q ss_pred ceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCc------EEEEEecCHHHHHHHHHHccCCcccCccee
Q 025583 83 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM------TGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 151 (250)
Q Consensus 83 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~------~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~ 151 (250)
++|.|.+||+.++++++.+.+.....+............ -|+|.|.+.+++..-.+.++|..+.+..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~ 76 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQ 76 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCC
Confidence 378999999999999999999988877666665443211 899999999999999999999988776543
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.41 E-value=0.00098 Score=44.41 Aligned_cols=70 Identities=19% Similarity=0.230 Sum_probs=54.0
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhc---c--CCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEE
Q 025583 81 SDYRVLVTGLPSSASWQDLKDHMRR---A--GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 155 (250)
Q Consensus 81 ~~~~l~v~~lp~~~~~~~l~~~f~~---~--g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 155 (250)
...+|.|.|||..+.++.|+-+|+. - |+|..+.... . -|+|+|.+++.|+..+++ ....|.+ ..+.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~--~AvItF~d~~va~rVL~k-~~H~L~~----~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--C--GGVLTFREPADAERVLAQ-ADHELHG----AQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--T--EEEEEESSHHHHHHHHTC-SCCBSSS----SBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--C--cEEEEEcChHHHHHHhcC-CcceecC----eEEE
Confidence 3458999999999999999999987 2 4777777765 2 699999999999999873 2455666 4556
Q ss_pred EEec
Q 025583 156 VREY 159 (250)
Q Consensus 156 v~~~ 159 (250)
|..+
T Consensus 78 V~P~ 81 (104)
T 2dhx_A 78 LRPA 81 (104)
T ss_dssp EEEC
T ss_pred EEcC
Confidence 6554
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.36 E-value=0.00087 Score=44.83 Aligned_cols=72 Identities=11% Similarity=0.066 Sum_probs=56.9
Q ss_pred CceEEEeCCCCcc-C----HHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEE
Q 025583 82 DYRVLVTGLPSSA-S----WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 156 (250)
Q Consensus 82 ~~~l~v~~lp~~~-~----~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 156 (250)
.++|+|.||+..+ . .+.++++|..|+++......+.-. -..|.|.++++|.+|...|++..++| ..++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR--Rirv~F~~~~~A~~AR~~Lh~~~f~g----~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK--RVRINFSNPLSAADARLRLHKTEFLG----KEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT--EEEEECSSTTHHHHHHHTSTTSEETT----EECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce--EEEEEeCChHHHHHHHHHhccceecC----ceeEE
Confidence 3589999998865 3 257789999999887766655443 57899999999999999999999999 45665
Q ss_pred Eec
Q 025583 157 REY 159 (250)
Q Consensus 157 ~~~ 159 (250)
--.
T Consensus 79 YFg 81 (104)
T 1wey_A 79 YFA 81 (104)
T ss_dssp ECC
T ss_pred Eec
Confidence 443
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.34 E-value=0.0021 Score=44.16 Aligned_cols=73 Identities=18% Similarity=0.183 Sum_probs=58.1
Q ss_pred CCCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCcccCcceeeEEEEEec
Q 025583 80 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 159 (250)
Q Consensus 80 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~ 159 (250)
.....|.|-+.|... ...|..+|.+||.|+.... ...++.-.|.|.+..+|++||. .||..+.|. ..|-|...
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~---~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKALS-KDGRIFGES---IMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHHT-TTTCEETTT---EECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCC---EEEEEEEC
Confidence 445688899999885 5778889999999987776 2334489999999999999998 699999863 56666654
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.11 E-value=0.00078 Score=44.48 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=42.8
Q ss_pred eEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHcc
Q 025583 84 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 141 (250)
Q Consensus 84 ~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~ 141 (250)
.++| ++|......||.++|..||.|.-..|. +. -|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv~I~Wid-DT---sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNIQISWID-DT---SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEE-TT---EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCEEEEEEc-CC---eEEEEecCHHHHHHHHHhcc
Confidence 4555 999999999999999999955444443 22 69999999999999999764
No 389
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.81 E-value=0.0044 Score=41.26 Aligned_cols=62 Identities=27% Similarity=0.430 Sum_probs=47.2
Q ss_pred ccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 025583 4 GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDY 83 (250)
Q Consensus 4 G~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (250)
|+|.+|... .+-|+|+|.+.+.|+..|+ -....|.+.+|.|.... .....
T Consensus 38 G~V~~v~~~-----~~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~~------------------------~~~~~ 87 (104)
T 2dhx_A 38 GPVLSWQRL-----GCGGVLTFREPADAERVLA-QADHELHGAQLSLRPAP------------------------PRAPA 87 (104)
T ss_dssp CCEEEEEEE-----TTEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEECC------------------------CCCCC
T ss_pred ceeeEEEEc-----CCcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcCC------------------------CCCcc
Confidence 688888875 3789999999999999994 34567888999997642 12234
Q ss_pred eEEEeCCCCccC
Q 025583 84 RVLVTGLPSSAS 95 (250)
Q Consensus 84 ~l~v~~lp~~~~ 95 (250)
+|++.+|+..++
T Consensus 88 r~ll~gl~~~t~ 99 (104)
T 2dhx_A 88 RLLLQGLPPGTS 99 (104)
T ss_dssp CCCCCSCCCCCC
T ss_pred eEeeecCCCCCC
Confidence 788888888764
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.80 E-value=0.0042 Score=42.68 Aligned_cols=49 Identities=18% Similarity=0.347 Sum_probs=40.7
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCC-eEEEEEEcc
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG-YRLRVELAH 54 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~g-r~i~V~~~~ 54 (250)
+||+|++...+ ....+-.|.|.+..+|++|| ..||..|+| -.|-|..+.
T Consensus 46 ~~G~Iv~~~~~---~~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 46 QYGNILKHVMS---NTGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp TTSCEEEEEEC---SSSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEECC
T ss_pred hhCcEEEeccC---CCCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEECC
Confidence 79999999874 23679999999999999999 679999985 566676653
No 391
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.63 E-value=0.0051 Score=40.63 Aligned_cols=71 Identities=14% Similarity=0.217 Sum_probs=52.7
Q ss_pred CceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCC--c----EEEEEecCHHHHHHHHHHccCCcccCcceee
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--M----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 152 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--~----~a~v~f~~~~~a~~a~~~l~g~~~~g~~~~~ 152 (250)
..+|.|..||+.++++++.+.+...-++.+......... . -|+|.|.+.++...-.+.++|..+.+..++.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~ 85 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLE 85 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCE
Confidence 458999999999999998888876555433332222111 0 7899999999999999999999887765443
No 392
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.18 E-value=0.0077 Score=42.01 Aligned_cols=73 Identities=16% Similarity=0.233 Sum_probs=52.5
Q ss_pred CceEEEeCCCCccCHHHHHHHhhccCCeeEE-EEE--------------ecC---CCcEEEEEecCHHHHHHHHHHccCC
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVF--------------RDR---GGMTGIVDYTSYDDMKYAIRKLDRS 143 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~-~~~--------------~~~---~~~~a~v~f~~~~~a~~a~~~l~g~ 143 (250)
...|.|-+.|.... ..|.++|++||.|+.- .+. .-+ .++...|+|++..+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 45778888987765 4577889999998652 111 001 22378999999999999997 7999
Q ss_pred cccCcceeeEEEEEecc
Q 025583 144 EFRNAFSRSYVRVREYD 160 (250)
Q Consensus 144 ~~~g~~~~~~i~v~~~~ 160 (250)
.|.| .-|-|..+.
T Consensus 85 ii~G----~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNG----VLLGVIPYT 97 (132)
T ss_dssp EETT----EECEEEECC
T ss_pred EeCc----EEEEEEECC
Confidence 9998 566666553
No 393
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.06 E-value=0.011 Score=39.51 Aligned_cols=51 Identities=16% Similarity=0.102 Sum_probs=41.3
Q ss_pred CcccEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEccC
Q 025583 2 MYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 55 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~~ 55 (250)
+|+++....... +-.=..|.|.++++|.+|-..|++..+.|..|+|.+++.
T Consensus 33 ~~~~~~tF~~lk---SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 33 TYDKDTTFQYFK---SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp TTCSSCEEEEET---TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred hhCcCcceeecC---cceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 456666555432 234678999999999999999999999999999999973
No 394
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.37 E-value=0.013 Score=40.88 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=32.0
Q ss_pred CcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEcc
Q 025583 18 PGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 54 (250)
Q Consensus 18 ~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~ 54 (250)
..+-.|.|.++.+|++|| ..||..|+|.-|-|.++.
T Consensus 62 ~NWikItYds~~~A~rAL-~~NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 62 NSWTKITYDNPASAVDAL-LENGAVFNGVLLGVIPYT 97 (132)
T ss_dssp TTEEEEEBSSHHHHHHHH-TTTTCEETTEECEEEECC
T ss_pred CcEEEEEcCCHHHHHHHH-HhCCeEeCcEEEEEEECC
Confidence 567899999999999999 679999999988888764
No 395
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.36 E-value=0.0095 Score=51.01 Aligned_cols=54 Identities=13% Similarity=0.230 Sum_probs=40.2
Q ss_pred ceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHH
Q 025583 83 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIR 138 (250)
Q Consensus 83 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~ 138 (250)
..|+|. .|..+++.+|.++|.+||.|..+.+..+. +.||.|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-SEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-CeEEEEEeCCHHHHHHHHh
Confidence 478997 68889999999999999999998887643 3499999999998887654
No 396
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=89.86 E-value=0.43 Score=29.69 Aligned_cols=44 Identities=16% Similarity=0.208 Sum_probs=32.9
Q ss_pred cEEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEEcc
Q 025583 5 PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 54 (250)
Q Consensus 5 ~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~~~ 54 (250)
.|-.|.|. ..|.||+.... .|+.++..|++..+.|+.+.|+.+.
T Consensus 32 ~IG~I~i~-----d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 32 DIGIITIM-----DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp GEEEEEEC-----SSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred hccEEEEe-----CCcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 56677775 56999999755 6888999999999999999998763
No 397
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.79 E-value=2 Score=37.35 Aligned_cols=56 Identities=20% Similarity=0.263 Sum_probs=42.8
Q ss_pred CceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccC
Q 025583 82 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR 142 (250)
Q Consensus 82 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g 142 (250)
...++|+ +|......+|.++|..||.+.-..+ +.. .|+|.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wi--ddt--~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWI--DDT--SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEEC--SSS--EEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEE--cCC--eEEEEECCHHHHHHHHHHHHh
Confidence 4456665 8888889999999999996533222 222 799999999999999998853
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=83.57 E-value=0.37 Score=41.27 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=25.4
Q ss_pred CCcccEEEEEEecCCCCCcEEEEEECChHHHHHHHH
Q 025583 1 MMYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 36 (250)
Q Consensus 1 ~kfG~I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~ 36 (250)
++||+|.++.+-.. ..-||.|||.+.+++..++.
T Consensus 74 ~~~g~i~~~~~~~~--~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 74 SQFGPINNHFFYES--FGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp GGGSCCCCEEEECS--SSEEEEEECC---CCHHHHS
T ss_pred HhcCCcceEEEEcc--CCeEEEEEeCCHHHHHHHHh
Confidence 58999999998642 24799999999999997774
No 399
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=83.03 E-value=5.7 Score=25.64 Aligned_cols=34 Identities=26% Similarity=0.339 Sum_probs=25.9
Q ss_pred EEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCC
Q 025583 6 IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 41 (250)
Q Consensus 6 I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~ 41 (250)
|.+|.++. ..+||-||++...++...++..+.|.
T Consensus 40 i~~v~vP~--~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASE--SLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECT--TSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEec--ccCCEEEEEEecchhHHHHHHCCCCc
Confidence 56666653 47999999999998888888666553
No 400
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.41 E-value=0.95 Score=27.13 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=15.5
Q ss_pred cccEEEEEEecCCCCCcEEEEEECCh
Q 025583 3 YGPIVDIDLKIPPRPPGYAFLEFEDY 28 (250)
Q Consensus 3 fG~I~~v~i~~~~~~~g~aFV~f~~~ 28 (250)
.|+|+.|... +..|||.|+|.
T Consensus 27 lGtV~kV~~~-----~~~ClV~FeD~ 47 (68)
T 2e5p_A 27 LGTIKKVDSA-----REVCLVQFEDD 47 (68)
T ss_dssp EEEEEEEETT-----TTEEEEEETTT
T ss_pred EeEEEEEecC-----CcEEEEEEccC
Confidence 3677776643 78999999864
No 401
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=79.79 E-value=9.5 Score=24.35 Aligned_cols=57 Identities=14% Similarity=0.295 Sum_probs=45.5
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHcc
Q 025583 81 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 141 (250)
Q Consensus 81 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~ 141 (250)
.++.|.|-|+|..+-..++--.....|-..++..... .|.|.|.+.++...|+.+|-
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyidg----qamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDG----QAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSS----CEEEEESSHHHHHHHHHHHE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecC----eeEEEecCChHHHHHHHHHH
Confidence 4567888999999988888777777787667766543 59999999999999998763
No 402
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=79.46 E-value=2.2 Score=28.04 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=18.7
Q ss_pred cEEEEEECChHHHHHHHHhhC
Q 025583 19 GYAFLEFEDYRDAEDAIRGRD 39 (250)
Q Consensus 19 g~aFV~f~~~e~A~~A~~~l~ 39 (250)
-.|||.|.+++.|..|+..+.
T Consensus 40 TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 40 TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp TEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEEecCHHHHHHHHHhcc
Confidence 489999999999999998764
No 403
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=79.27 E-value=1.4 Score=26.51 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=14.5
Q ss_pred ccEEEEEEecCCCCCcEEEEEECCh
Q 025583 4 GPIVDIDLKIPPRPPGYAFLEFEDY 28 (250)
Q Consensus 4 G~I~~v~i~~~~~~~g~aFV~f~~~ 28 (250)
|+|+.|.- ..|.|+|.|+|-
T Consensus 32 gtI~~V~~-----~~gtC~V~F~D~ 51 (66)
T 2eqj_A 32 GTIKKINI-----LKQSCFIIFEDS 51 (66)
T ss_dssp EEEEEEET-----TTTEEEEEETTT
T ss_pred eEEEEEcc-----CCcEEEEEEccC
Confidence 56666653 379999999864
No 404
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=79.21 E-value=2.4 Score=27.86 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=18.6
Q ss_pred cEEEEEECChHHHHHHHHhhC
Q 025583 19 GYAFLEFEDYRDAEDAIRGRD 39 (250)
Q Consensus 19 g~aFV~f~~~e~A~~A~~~l~ 39 (250)
-.|||.|.+++.|..|+..+.
T Consensus 50 TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 50 TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp TEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEEecCHHHHHHHHHhcc
Confidence 489999999999999997663
No 405
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=79.06 E-value=1.4 Score=27.19 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=16.2
Q ss_pred cccEEEEEEecCCCCCcEEEEEECCh
Q 025583 3 YGPIVDIDLKIPPRPPGYAFLEFEDY 28 (250)
Q Consensus 3 fG~I~~v~i~~~~~~~g~aFV~f~~~ 28 (250)
.|+|+.|... +..|||.|+|.
T Consensus 44 LGTI~kV~~~-----~e~ClV~F~D~ 64 (79)
T 2m0o_A 44 LGTIKKVDSA-----REVCLVQFEDD 64 (79)
T ss_dssp EEEEEEEETT-----TTEEEEEETTS
T ss_pred eEEEEEeccC-----CCEEEEEEcCC
Confidence 4778777654 78999999874
No 406
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=76.94 E-value=3.6 Score=26.61 Aligned_cols=38 Identities=26% Similarity=0.226 Sum_probs=29.2
Q ss_pred CCcEEEEEECChHHHHHHHHhhCCCccCC---e--EEEEEEcc
Q 025583 17 PPGYAFLEFEDYRDAEDAIRGRDGYNFDG---Y--RLRVELAH 54 (250)
Q Consensus 17 ~~g~aFV~f~~~e~A~~A~~~l~g~~~~g---r--~i~V~~~~ 54 (250)
.-.-|||.|.+.+++..-.+.++|..+-+ . +..|++|-
T Consensus 44 ~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~VE~AP 86 (91)
T 1uw4_A 44 MYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAP 86 (91)
T ss_dssp CCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECEEEECS
T ss_pred cceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeEEEEcC
Confidence 34689999999999999999999987642 2 33466654
No 407
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.69 E-value=0.7 Score=27.26 Aligned_cols=12 Identities=25% Similarity=0.418 Sum_probs=9.8
Q ss_pred CCcEEEEEECCh
Q 025583 17 PPGYAFLEFEDY 28 (250)
Q Consensus 17 ~~g~aFV~f~~~ 28 (250)
.+..|||.|+|.
T Consensus 34 ~~~~ClV~FeD~ 45 (63)
T 2e5q_A 34 SKQSCLVTFEDN 45 (63)
T ss_dssp TTSEEEEEETTS
T ss_pred CCCEEEEEEccC
Confidence 378999999864
No 408
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=74.53 E-value=4.2 Score=26.61 Aligned_cols=37 Identities=27% Similarity=0.239 Sum_probs=28.7
Q ss_pred CcEEEEEECChHHHHHHHHhhCCCccCC---e--EEEEEEcc
Q 025583 18 PGYAFLEFEDYRDAEDAIRGRDGYNFDG---Y--RLRVELAH 54 (250)
Q Consensus 18 ~g~aFV~f~~~e~A~~A~~~l~g~~~~g---r--~i~V~~~~ 54 (250)
-.-|||.|.+.++...-.+.++|..+-+ . +..|++|-
T Consensus 53 ~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~VE~AP 94 (97)
T 2l08_A 53 YSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVEFAP 94 (97)
T ss_dssp CCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEEEEECC
T ss_pred ceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeEEEecC
Confidence 3569999999999999999999976642 2 45566663
No 409
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=72.67 E-value=2.8 Score=24.40 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=15.1
Q ss_pred cccEEEEEEecCCCCCcEEEEEECCh
Q 025583 3 YGPIVDIDLKIPPRPPGYAFLEFEDY 28 (250)
Q Consensus 3 fG~I~~v~i~~~~~~~g~aFV~f~~~ 28 (250)
.|+|+.|... ...|+|.|+|.
T Consensus 21 lGtI~~V~~~-----~~~clV~F~D~ 41 (58)
T 4hcz_A 21 LGTIKKVDSA-----REVCLVQFEDD 41 (58)
T ss_dssp EEEEEEEETT-----TTEEEEEETTS
T ss_pred eEEEEEEecC-----CCEEEEEEcCC
Confidence 3677776543 67999999874
No 410
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=63.28 E-value=8.6 Score=25.58 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=27.6
Q ss_pred EEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCCc
Q 025583 6 IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYN 42 (250)
Q Consensus 6 I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~~ 42 (250)
|.+|..+ ...+||-|||=..+.+...|+..+.+..
T Consensus 41 I~Si~~~--~~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 41 IKSVVAP--EHVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCEEEEC--TTCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred eEEEEec--CCCceEEEEEeCCHHHHHHHHhccccee
Confidence 5566554 4569999999999999999997776553
No 411
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=55.49 E-value=6.5 Score=23.56 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=13.0
Q ss_pred cccEEEEEEecCCCCCcEEEEEECC
Q 025583 3 YGPIVDIDLKIPPRPPGYAFLEFED 27 (250)
Q Consensus 3 fG~I~~v~i~~~~~~~g~aFV~f~~ 27 (250)
.|+|+-..- .+||+||.=.+
T Consensus 3 ~G~Vk~fn~-----~kGfGFI~~~~ 22 (66)
T 1c9o_A 3 RGKVKWFNN-----EKGYGFIEVEG 22 (66)
T ss_dssp EEEEEEEET-----TTTEEEEEETT
T ss_pred ceEEEEEEC-----CCCeEEEecCC
Confidence 466655442 38999998653
No 412
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=51.70 E-value=8 Score=23.72 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=12.9
Q ss_pred cccEEEEEEecCCCCCcEEEEEECC
Q 025583 3 YGPIVDIDLKIPPRPPGYAFLEFED 27 (250)
Q Consensus 3 fG~I~~v~i~~~~~~~g~aFV~f~~ 27 (250)
.|.|+-..- .+||+||.-.+
T Consensus 3 ~G~Vk~fn~-----~kGfGFI~~~~ 22 (73)
T 3a0j_A 3 KGRVKWFNA-----EKGYGFIEREG 22 (73)
T ss_dssp EEEEEEEET-----TTTEEEEECTT
T ss_pred CEEEEEEEC-----CCCEEEEecCC
Confidence 456554442 38999998653
No 413
>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.58.42.1
Probab=51.60 E-value=44 Score=22.35 Aligned_cols=25 Identities=32% Similarity=0.634 Sum_probs=20.1
Q ss_pred CCcEEEEEECChH-----HHHHHHHhhCCC
Q 025583 17 PPGYAFLEFEDYR-----DAEDAIRGRDGY 41 (250)
Q Consensus 17 ~~g~aFV~f~~~e-----~A~~A~~~l~g~ 41 (250)
..||.||++...+ ++-..+....|.
T Consensus 61 fPGYVFV~~~~~~~~~~~~~~~~vr~t~gV 90 (119)
T 1nz8_A 61 FPGYLFIQMDLGDEEEPNEAWEVVRGTPGI 90 (119)
T ss_dssp STTEEEEEECCCSSSSCCHHHHHHHHSTTC
T ss_pred CCCEEEEEeeccccccchhHHHHHHcCCCc
Confidence 6899999998877 777778776664
No 414
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=51.60 E-value=8.2 Score=23.22 Aligned_cols=20 Identities=15% Similarity=0.346 Sum_probs=12.8
Q ss_pred cccEEEEEEecCCCCCcEEEEEECC
Q 025583 3 YGPIVDIDLKIPPRPPGYAFLEFED 27 (250)
Q Consensus 3 fG~I~~v~i~~~~~~~g~aFV~f~~ 27 (250)
.|+|+-... .+||+||.=.+
T Consensus 3 ~G~Vk~fn~-----~kGfGFI~~~~ 22 (67)
T 3cam_A 3 TGIVKWFND-----AKGFGFITPDE 22 (67)
T ss_dssp EEEEEEEET-----TTTEEEEEETT
T ss_pred CEEEEEEEC-----CCCeEEEecCC
Confidence 455554432 39999998654
No 415
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=50.40 E-value=6.6 Score=24.22 Aligned_cols=39 Identities=10% Similarity=0.120 Sum_probs=21.4
Q ss_pred CcEEEEEECChHHHH---HHHHhhCC--CccCCeEEEEEEccCC
Q 025583 18 PGYAFLEFEDYRDAE---DAIRGRDG--YNFDGYRLRVELAHGG 56 (250)
Q Consensus 18 ~g~aFV~f~~~e~A~---~A~~~l~g--~~~~gr~i~V~~~~~~ 56 (250)
+||+||+=.+-++.- .||....| ..-.|..+..+.....
T Consensus 12 KGfGFI~~~dG~DvFvH~s~i~~~~g~~~l~~G~~V~F~~~~g~ 55 (74)
T 2kcm_A 12 KKYGFIQGDDGESYFLHFSELLDKKDEGKLVKGSMVHFDPTPTP 55 (74)
T ss_dssp TTEEEEEETTSCEECCCGGGSSCSGGGTTCCTTSEEEEEEECTT
T ss_pred CCEEEEecCCCceEEEEhhhcccCCCCCCCCCCCEEEEEEEECC
Confidence 999999876643321 22210122 2334777777766543
No 416
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=49.64 E-value=37 Score=19.88 Aligned_cols=55 Identities=11% Similarity=0.073 Sum_probs=40.3
Q ss_pred ceEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHc
Q 025583 83 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 140 (250)
Q Consensus 83 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l 140 (250)
..+.|.++.-..-...|+..+.. ..|..+.+..... .+.|.|.+.+....+++.+
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~--~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEA--VVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEE--EEEEEGGGHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCC--EEEEEECCHHHHHHHHHHc
Confidence 46788899888888899999999 8887777654332 5778887555666666643
No 417
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=49.49 E-value=47 Score=21.03 Aligned_cols=51 Identities=16% Similarity=0.100 Sum_probs=35.1
Q ss_pred CCCccCHHHHHHHhhc-cC-CeeEEEEEecCCCc-EEEEEecCHHHHHHHHHHc
Q 025583 90 LPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGGM-TGIVDYTSYDDMKYAIRKL 140 (250)
Q Consensus 90 lp~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~~-~a~v~f~~~~~a~~a~~~l 140 (250)
....++..+|++.++. |+ .|..+.....+.+. .|+|.+....+|.....++
T Consensus 30 Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 30 VDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp ECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHHS
T ss_pred EcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHhh
Confidence 4556778888888877 44 56666665544443 8999999887777655543
No 418
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=48.06 E-value=44 Score=24.28 Aligned_cols=47 Identities=21% Similarity=0.271 Sum_probs=31.4
Q ss_pred eEEEeCCCC-c--------cCHHHHHHHh--hccCCeeEEEEEecCCCc--EEEEEecCHH
Q 025583 84 RVLVTGLPS-S--------ASWQDLKDHM--RRAGDVCFSQVFRDRGGM--TGIVDYTSYD 131 (250)
Q Consensus 84 ~l~v~~lp~-~--------~~~~~l~~~f--~~~g~v~~~~~~~~~~~~--~a~v~f~~~~ 131 (250)
++.|.|+|. . .+..+|.+.| ..|.++... ...+..+. +|+|+|...-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~-~l~~~~Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVR-PLWNYLGHSGTAIVEFNKDW 73 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEE-EEECSSBEEEEEEEECCSSH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeE-ecccCCCCceeEEEEecCCh
Confidence 566777776 1 3457899977 888886644 44444443 8999999643
No 419
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=47.55 E-value=13 Score=22.37 Aligned_cols=11 Identities=18% Similarity=0.440 Sum_probs=9.4
Q ss_pred CcEEEEEECCh
Q 025583 18 PGYAFLEFEDY 28 (250)
Q Consensus 18 ~g~aFV~f~~~ 28 (250)
+..|||.|+|.
T Consensus 41 ~~~ClV~FeD~ 51 (69)
T 2xk0_A 41 SDQYLIRFDDQ 51 (69)
T ss_dssp SSCEEEEETTC
T ss_pred CceEEEEecCC
Confidence 77899999875
No 420
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=45.19 E-value=18 Score=27.08 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=27.3
Q ss_pred EEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCC
Q 025583 6 IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 41 (250)
Q Consensus 6 I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~ 41 (250)
|.+|..+ ...+||-|||=..+.+..+|++.+.+.
T Consensus 139 I~Si~~~--d~lkGYIyVEA~~~~~V~~ai~Gi~~v 172 (200)
T 2exu_A 139 ILSIFQR--DNYTGRIYIEAPKQSVIEKFCNGVPDI 172 (200)
T ss_dssp CCEEECC--TTSTTEEEEECSCHHHHHHHHTTCTTE
T ss_pred EEEEEec--CCCcEEEEEEECCHHHHHHHHhhhhhh
Confidence 5555543 346999999999999999999888876
No 421
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=44.27 E-value=16 Score=22.47 Aligned_cols=10 Identities=30% Similarity=0.796 Sum_probs=8.4
Q ss_pred CcEEEEEECC
Q 025583 18 PGYAFLEFED 27 (250)
Q Consensus 18 ~g~aFV~f~~ 27 (250)
+||+||+=.+
T Consensus 14 KGfGFI~~~d 23 (74)
T 2k5n_A 14 KGFGFIKDEN 23 (74)
T ss_dssp TTEEEEEESS
T ss_pred CCeEEEecCC
Confidence 8999998764
No 422
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=44.21 E-value=13 Score=22.22 Aligned_cols=10 Identities=30% Similarity=0.870 Sum_probs=8.4
Q ss_pred CcEEEEEECC
Q 025583 18 PGYAFLEFED 27 (250)
Q Consensus 18 ~g~aFV~f~~ 27 (250)
+||+||.-.+
T Consensus 12 kGfGFI~~~~ 21 (66)
T 1g6p_A 12 KGYGFITKDE 21 (66)
T ss_dssp TTEEEEEETT
T ss_pred CCEEEEecCC
Confidence 8999998654
No 423
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=41.19 E-value=76 Score=22.20 Aligned_cols=54 Identities=19% Similarity=0.133 Sum_probs=35.9
Q ss_pred EEeCCCCccCHHHHHHHhhc-cC-CeeEEEEEecCCCc-EEEEEecCHHHHHHHHHH
Q 025583 86 LVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGGM-TGIVDYTSYDDMKYAIRK 139 (250)
Q Consensus 86 ~v~~lp~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~~-~a~v~f~~~~~a~~a~~~ 139 (250)
++--....++..+|++.++. |+ .|..+.....+++. -|+|.+....+|......
T Consensus 82 ~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 82 LVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANR 138 (142)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHHh
Confidence 34445667788888888776 44 56666666555444 899999877666655443
No 424
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=41.17 E-value=33 Score=24.14 Aligned_cols=34 Identities=32% Similarity=0.370 Sum_probs=26.8
Q ss_pred EEEEEEecCCCCCcEEEEEECChHHHHHHHHhhCCC
Q 025583 6 IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 41 (250)
Q Consensus 6 I~~v~i~~~~~~~g~aFV~f~~~e~A~~A~~~l~g~ 41 (250)
|.+|.++. ..+||-||++...++...++..+.|.
T Consensus 33 i~~v~vp~--~fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 33 IYAILAPS--RVKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCEEEECT--TCCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEeec--CCCcEEEEEEEchHHHHHHHhCCCCE
Confidence 55666653 46999999999998888899877774
No 425
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=40.60 E-value=78 Score=22.37 Aligned_cols=54 Identities=11% Similarity=0.092 Sum_probs=35.9
Q ss_pred EEeCCCCccCHHHHHHHhhc-cC-CeeEEEEEecCCCc-EEEEEecCHHHHHHHHHH
Q 025583 86 LVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGGM-TGIVDYTSYDDMKYAIRK 139 (250)
Q Consensus 86 ~v~~lp~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~~-~a~v~f~~~~~a~~a~~~ 139 (250)
++--....++..+|++.++. |+ .|..|.....+++. -|+|.+....+|......
T Consensus 90 ~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 90 MVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLANK 146 (150)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHHh
Confidence 33345667788888888776 45 56666666555544 899999877666655443
No 426
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=39.46 E-value=18 Score=25.57 Aligned_cols=11 Identities=27% Similarity=0.465 Sum_probs=9.1
Q ss_pred CCcEEEEEECC
Q 025583 17 PPGYAFLEFED 27 (250)
Q Consensus 17 ~~g~aFV~f~~ 27 (250)
.+||+||+-.+
T Consensus 73 ~KGfGFI~~dd 83 (147)
T 3aqq_A 73 SKGHGFITPAD 83 (147)
T ss_dssp TTTEEEEEESS
T ss_pred CCCeEEeccCC
Confidence 39999999864
No 427
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=38.60 E-value=17 Score=22.58 Aligned_cols=10 Identities=30% Similarity=0.717 Sum_probs=8.2
Q ss_pred CCcEEEEEEC
Q 025583 17 PPGYAFLEFE 26 (250)
Q Consensus 17 ~~g~aFV~f~ 26 (250)
.+||+||+=.
T Consensus 19 ~kGfGFI~~~ 28 (79)
T 1h95_A 19 RNGYGFINRN 28 (79)
T ss_dssp TTTEEEEEEG
T ss_pred CCCcEEEecC
Confidence 4999999864
No 428
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=35.44 E-value=40 Score=30.20 Aligned_cols=38 Identities=21% Similarity=0.431 Sum_probs=29.9
Q ss_pred CcccEEEEEEec--CCCCCcEEEEEECChHHHHHHHHhhC
Q 025583 2 MYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRD 39 (250)
Q Consensus 2 kfG~I~~v~i~~--~~~~~g~aFV~f~~~e~A~~A~~~l~ 39 (250)
.+|-|+.+.|+. ......+++|.|.+.++|..|+..+-
T Consensus 370 TLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 370 TLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp SSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHH
Confidence 478999999965 23345678999999999999887664
No 429
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=33.45 E-value=85 Score=22.24 Aligned_cols=52 Identities=13% Similarity=0.035 Sum_probs=33.7
Q ss_pred EeCCCCccCHHHHHHHhhc-cC-CeeEEEEEecCCCc-EEEEEecCHHHHHHHHH
Q 025583 87 VTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGGM-TGIVDYTSYDDMKYAIR 138 (250)
Q Consensus 87 v~~lp~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~~-~a~v~f~~~~~a~~a~~ 138 (250)
+-.....++..+|++.++. |+ .|..|.....+++. -|+|.+....+|.....
T Consensus 93 vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 93 VFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVAN 147 (152)
T ss_dssp EEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHG
T ss_pred EEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 3344556677778777776 44 56666665554444 89999988776665443
No 430
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=31.39 E-value=33 Score=20.68 Aligned_cols=11 Identities=36% Similarity=0.794 Sum_probs=8.7
Q ss_pred CCcEEEEEECC
Q 025583 17 PPGYAFLEFED 27 (250)
Q Consensus 17 ~~g~aFV~f~~ 27 (250)
.+||+||.-.+
T Consensus 16 ~kGfGFI~~~~ 26 (71)
T 3i2z_B 16 SKGFGFITPED 26 (71)
T ss_dssp TTTEEEEEETT
T ss_pred CCCcEEEecCC
Confidence 38999998754
No 431
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=30.04 E-value=42 Score=21.35 Aligned_cols=23 Identities=13% Similarity=0.319 Sum_probs=17.9
Q ss_pred cEEEEEEec---CCCCCcEEEEEECC
Q 025583 5 PIVDIDLKI---PPRPPGYAFLEFED 27 (250)
Q Consensus 5 ~I~~v~i~~---~~~~~g~aFV~f~~ 27 (250)
+|++|+|.. .++-++||=|.|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 688999843 56778999999964
No 432
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=29.00 E-value=30 Score=22.13 Aligned_cols=9 Identities=22% Similarity=0.759 Sum_probs=7.4
Q ss_pred CCcEEEEEE
Q 025583 17 PPGYAFLEF 25 (250)
Q Consensus 17 ~~g~aFV~f 25 (250)
.+||+||.-
T Consensus 19 ~KGfGFI~~ 27 (90)
T 3ulj_A 19 RMGFGFISM 27 (90)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEeEe
Confidence 499999964
No 433
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=28.46 E-value=84 Score=17.71 Aligned_cols=54 Identities=13% Similarity=0.186 Sum_probs=38.5
Q ss_pred eEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEecC---HHHHHHHHHH
Q 025583 84 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTS---YDDMKYAIRK 139 (250)
Q Consensus 84 ~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~~---~~~a~~a~~~ 139 (250)
.+.|.++.-......|+..+.....|..+.+..... .+.|.|.. .++...+++.
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~--~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 5 NLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALE--QAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTT--EEEEEECTTCCHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCC--EEEEEECCCCCHHHHHHHHHH
Confidence 577888888777888999999888888777765544 67888743 3344455543
No 434
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=28.43 E-value=29 Score=24.52 Aligned_cols=10 Identities=30% Similarity=0.720 Sum_probs=8.5
Q ss_pred CCcEEEEEEC
Q 025583 17 PPGYAFLEFE 26 (250)
Q Consensus 17 ~~g~aFV~f~ 26 (250)
.+||+||...
T Consensus 20 ~kGfGFI~~~ 29 (148)
T 3ts2_A 20 RMGFGFLSMT 29 (148)
T ss_dssp TTTEEEEEEE
T ss_pred CCCeeEEeeC
Confidence 3899999976
No 435
>2oug_A Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli}
Probab=28.36 E-value=1.4e+02 Score=21.01 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=19.4
Q ss_pred CCCcEEEEEECChHHHHHHHHhhCCC
Q 025583 16 RPPGYAFLEFEDYRDAEDAIRGRDGY 41 (250)
Q Consensus 16 ~~~g~aFV~f~~~e~A~~A~~~l~g~ 41 (250)
-..||-||++...+++-..+....|.
T Consensus 50 lfpgYvFV~~~~~~~~~~~v~~~~gv 75 (162)
T 2oug_A 50 LFPNYLFVEFDPEVIHTTTINATRGV 75 (162)
T ss_dssp SSTTEEEEEECTTTSCHHHHHHSTTE
T ss_pred cCCCEEEEEEEcccCceEEEEeCCCc
Confidence 35899999998876666677666653
No 436
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=27.89 E-value=1.6e+02 Score=20.87 Aligned_cols=53 Identities=17% Similarity=0.122 Sum_probs=34.8
Q ss_pred EEeCCCCccCHHHHHHHhhc-cC-CeeEEEEEecCCCc-EEEEEecCHHHHHHHHH
Q 025583 86 LVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGGM-TGIVDYTSYDDMKYAIR 138 (250)
Q Consensus 86 ~v~~lp~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~~-~a~v~f~~~~~a~~a~~ 138 (250)
++-.....++..+|++.++. |+ .|..|......++. -|+|.+....+|.....
T Consensus 96 yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~~ 151 (156)
T 2zkr_s 96 LVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVAN 151 (156)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHHH
Confidence 34445667788888888876 45 56666665544443 79999987766544433
No 437
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=27.84 E-value=1.2e+02 Score=19.13 Aligned_cols=48 Identities=17% Similarity=0.154 Sum_probs=32.1
Q ss_pred CCCCccCHHHHHHHhhc-cC-CeeEEEEEecCCCc-EEEEEecCHHHHHHH
Q 025583 89 GLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGGM-TGIVDYTSYDDMKYA 136 (250)
Q Consensus 89 ~lp~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~~-~a~v~f~~~~~a~~a 136 (250)
.....++..+|++.++. |+ .|..+.....+.+. .|+|.+....+|...
T Consensus 28 ~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~ 78 (85)
T 1vq8_S 28 AVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEV 78 (85)
T ss_dssp EECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHH
T ss_pred EECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHH
Confidence 34556788888888876 45 56666665544443 899999876665443
No 438
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=27.59 E-value=18 Score=22.54 Aligned_cols=10 Identities=20% Similarity=0.680 Sum_probs=8.3
Q ss_pred CcEEEEEECC
Q 025583 18 PGYAFLEFED 27 (250)
Q Consensus 18 ~g~aFV~f~~ 27 (250)
+||+||.-.+
T Consensus 18 KGfGFI~~dd 27 (79)
T 2ytv_A 18 DQFGFINYEV 27 (79)
T ss_dssp SSEEEESCCC
T ss_pred ccceeEeCCC
Confidence 8999997654
No 439
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=27.09 E-value=73 Score=27.23 Aligned_cols=50 Identities=28% Similarity=0.292 Sum_probs=33.4
Q ss_pred CcccEEEEEEecCC--CCCcEEEEEECChHHHHHHHHhhCCCccCCeEEEEEE
Q 025583 2 MYGPIVDIDLKIPP--RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 52 (250)
Q Consensus 2 kfG~I~~v~i~~~~--~~~g~aFV~f~~~e~A~~A~~~l~g~~~~gr~i~V~~ 52 (250)
.||-|+.+.|.... .....+++.|.+.++|..|+..+... .+..+..+++
T Consensus 213 tlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~~~~-~g~~p~a~El 264 (476)
T 3pm9_A 213 TLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIAQGE-AAGNLTSFEL 264 (476)
T ss_dssp SSCEEEEEEEECEECCSEEEEEEEEESCHHHHHHHHHHHHHH-HGGGEEEEEE
T ss_pred CcEEEEEEEEEEeecCceeEEEEEEcCCHHHHHHHHHHHHHh-cCCCceEEEe
Confidence 47889999996522 23457899999999999988776321 1223445555
No 440
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=26.70 E-value=96 Score=17.80 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=40.1
Q ss_pred eEEEeCCCCccCHHHHHHHhhccCCeeEEEEEecCCCcEEEEEec----CHHHHHHHHHH
Q 025583 84 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYT----SYDDMKYAIRK 139 (250)
Q Consensus 84 ~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a~v~f~----~~~~a~~a~~~ 139 (250)
.+.|.++.-..-...|+..+.....|..+.+..... .+.|+|. +.++...+++.
T Consensus 5 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~--~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 5 QVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQN--RADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGT--EEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCC--EEEEEECCCCCCHHHHHHHHHH
Confidence 577888887777788999999888888777765544 6888885 34556666664
No 441
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=32.40 E-value=14 Score=22.38 Aligned_cols=11 Identities=18% Similarity=0.643 Sum_probs=8.6
Q ss_pred CCcEEEEEECC
Q 025583 17 PPGYAFLEFED 27 (250)
Q Consensus 17 ~~g~aFV~f~~ 27 (250)
.+||+||.=.+
T Consensus 15 ~kGfGFI~~~~ 25 (70)
T 2lss_A 15 TKNFGFIEQDN 25 (70)
Confidence 38999998654
No 442
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=26.28 E-value=52 Score=21.53 Aligned_cols=23 Identities=17% Similarity=0.301 Sum_probs=17.9
Q ss_pred cEEEEEEec---CCCCCcEEEEEECC
Q 025583 5 PIVDIDLKI---PPRPPGYAFLEFED 27 (250)
Q Consensus 5 ~I~~v~i~~---~~~~~g~aFV~f~~ 27 (250)
+|++|+|.. .++-++||=|.|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 688999843 56778999999954
No 443
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=26.16 E-value=57 Score=21.29 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=37.3
Q ss_pred CCCCccCHHHHHHHhhc-cCCeeEEEEEecCCCcEEEEEecCHHHHHHHHHHccCCccc
Q 025583 89 GLPSSASWQDLKDHMRR-AGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 146 (250)
Q Consensus 89 ~lp~~~~~~~l~~~f~~-~g~v~~~~~~~~~~~~~a~v~f~~~~~a~~a~~~l~g~~~~ 146 (250)
.++..+.-++|+..... ||.-..+... +. ...|-..+.++-.+|++.|+...-.
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~-n~---EllIpl~sQeDLDkaIellDrss~~ 77 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYT-NN---ELVIPLTTQDDLDKAVELLDRSIHM 77 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEEC-SS---SSCEECCSHHHHHHHHHHHHHCSSC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEe-cc---eEEEeccCHHHHHHHHHHHccCCcc
Confidence 34566777777766654 6765555544 22 3679999999999999988766433
No 444
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=25.39 E-value=37 Score=21.55 Aligned_cols=10 Identities=20% Similarity=0.624 Sum_probs=8.1
Q ss_pred CcEEEEEECC
Q 025583 18 PGYAFLEFED 27 (250)
Q Consensus 18 ~g~aFV~f~~ 27 (250)
+||+||+-.+
T Consensus 28 kGfGFI~~dd 37 (88)
T 2yty_A 28 DNFGFIETAN 37 (88)
T ss_dssp SSEEEEECSS
T ss_pred CCccEEecCC
Confidence 7999998654
No 445
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=24.58 E-value=59 Score=21.46 Aligned_cols=23 Identities=13% Similarity=0.319 Sum_probs=17.7
Q ss_pred cEEEEEEec---CCCCCcEEEEEECC
Q 025583 5 PIVDIDLKI---PPRPPGYAFLEFED 27 (250)
Q Consensus 5 ~I~~v~i~~---~~~~~g~aFV~f~~ 27 (250)
+|++|+|.. .++-++||=|.|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 588888843 56778999999953
No 446
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A
Probab=22.87 E-value=38 Score=24.68 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=20.2
Q ss_pred CCCc-EEEEEECChHHHHHHHHhhCC
Q 025583 16 RPPG-YAFLEFEDYRDAEDAIRGRDG 40 (250)
Q Consensus 16 ~~~g-~aFV~f~~~e~A~~A~~~l~g 40 (250)
.+.| ..+|-|.+.++|++.+++..|
T Consensus 107 gpMG~~~l~pFa~k~dAe~Fa~~~GG 132 (175)
T 2hpu_A 107 GGMGAPEAVPFSSRDEAAAFVLAEGG 132 (175)
T ss_dssp CSSSCCCEEEESCHHHHHHHHHHTEE
T ss_pred CCCCCCcccCcCCHHHHHHHHHHcCC
Confidence 3456 889999999999999876544
No 447
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=22.59 E-value=86 Score=27.03 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=25.2
Q ss_pred CcccEEEEEEecCCCCC--cEEEEEECChHHHHHHHH
Q 025583 2 MYGPIVDIDLKIPPRPP--GYAFLEFEDYRDAEDAIR 36 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~~--g~aFV~f~~~e~A~~A~~ 36 (250)
.||-|+.+.|.....+. ..+++.|.+.++|..|+.
T Consensus 226 ~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~~ 262 (520)
T 1wvf_A 226 NYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIVD 262 (520)
T ss_dssp SSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHHH
T ss_pred ceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHHH
Confidence 47889999996633333 467899999888766543
No 448
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=22.26 E-value=35 Score=20.77 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=20.9
Q ss_pred EEEEEECChHHHHHHHHhhCCCccCC
Q 025583 20 YAFLEFEDYRDAEDAIRGRDGYNFDG 45 (250)
Q Consensus 20 ~aFV~f~~~e~A~~A~~~l~g~~~~g 45 (250)
--|++..+.++|..|+..|+....++
T Consensus 36 rif~~~~d~~eA~e~~~~lqa~~~G~ 61 (71)
T 1gh9_A 36 RIFGRADDFEEASELVRKLQEEKYGS 61 (71)
T ss_dssp SCBSCCSSHHHHHHHHHHHSSCCCSC
T ss_pred EEEEecCCHHHHHHHHHHHHhhhcCc
Confidence 35777899999999999999775544
No 449
>2x4i_A CAG38848, uncharacterized protein 114; unknown function, DUF1874, archeal virus; 2.20A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=21.59 E-value=1.9e+02 Score=19.34 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=14.5
Q ss_pred CCCCc--cCHHHHHHHhhccCCeeEEEE
Q 025583 89 GLPSS--ASWQDLKDHMRRAGDVCFSQV 114 (250)
Q Consensus 89 ~lp~~--~~~~~l~~~f~~~g~v~~~~~ 114 (250)
.||.. .+.++|+++|.+ |.|.+..+
T Consensus 85 Rl~EG~vl~~eEi~k~~e~-g~i~~~~~ 111 (114)
T 2x4i_A 85 RLEEGKILTLEEILKLYES-GKVQFFEI 111 (114)
T ss_dssp ------CCCHHHHHHHHHH-TCEEEEEE
T ss_pred cCCCCccCCHHHHHHHHHc-CceEEEEE
Confidence 35544 367899999875 77766554
No 450
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=21.55 E-value=1e+02 Score=26.91 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=26.0
Q ss_pred CcccEEEEEEecC--CCCCcEEEEEECChHHHHHHHH
Q 025583 2 MYGPIVDIDLKIP--PRPPGYAFLEFEDYRDAEDAIR 36 (250)
Q Consensus 2 kfG~I~~v~i~~~--~~~~g~aFV~f~~~e~A~~A~~ 36 (250)
.+|-|+.+.|... ......+++.|.+.++|..|+.
T Consensus 258 tlGiIt~~tl~l~p~p~~~~~~~~~f~~~~~a~~~~~ 294 (560)
T 1e8g_A 258 NMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVD 294 (560)
T ss_dssp SSEEEEEEEEECEECCSCEEEEEEEECSTTHHHHHHH
T ss_pred cEEEEEEEEEEEEeCCCceEEEEEEcCCHHHHHHHHH
Confidence 3788999999652 2334678899999999877653
No 451
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=21.40 E-value=1e+02 Score=27.11 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=29.0
Q ss_pred CcccEEEEEEecCCCC--CcEEEEEECChHHHHHHHHhhC
Q 025583 2 MYGPIVDIDLKIPPRP--PGYAFLEFEDYRDAEDAIRGRD 39 (250)
Q Consensus 2 kfG~I~~v~i~~~~~~--~g~aFV~f~~~e~A~~A~~~l~ 39 (250)
.||-|+.+.|.....+ ...+++.|.+.++|.+|+..+-
T Consensus 300 tlGIIT~~tlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 339 (584)
T 2uuu_A 300 TLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQIR 339 (584)
T ss_dssp SSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred CcEEEEEEEEEEEecccceEEEEEEcCCHHHHHHHHHHHH
Confidence 4788999999653333 3578999999999999887664
No 452
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=20.41 E-value=62 Score=20.98 Aligned_cols=9 Identities=22% Similarity=0.748 Sum_probs=7.5
Q ss_pred CcEEEEEEC
Q 025583 18 PGYAFLEFE 26 (250)
Q Consensus 18 ~g~aFV~f~ 26 (250)
+||+||+-.
T Consensus 28 kGfGFI~~~ 36 (101)
T 2bh8_A 28 KGFGFITPD 36 (101)
T ss_dssp GTEEEEEES
T ss_pred CCCEEEEeC
Confidence 899999863
Done!