Query 025584
Match_columns 250
No_of_seqs 250 out of 1995
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 07:20:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025584.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025584hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03143 nudix hydrolase; Prov 100.0 1.1E-52 2.4E-57 384.3 26.6 212 32-245 18-229 (291)
2 PRK15009 GDP-mannose pyrophosp 99.9 9.8E-24 2.1E-28 183.0 16.9 123 105-244 4-136 (191)
3 KOG3041 Nucleoside diphosphate 99.9 9.1E-24 2E-28 182.6 14.9 154 46-242 6-159 (225)
4 PRK10729 nudF ADP-ribose pyrop 99.9 2.9E-22 6.3E-27 175.1 15.9 112 119-244 19-140 (202)
5 PRK11762 nudE adenosine nucleo 99.9 8.2E-21 1.8E-25 162.8 18.1 114 118-246 19-134 (185)
6 TIGR00052 nudix-type nucleosid 99.9 1.5E-20 3.2E-25 162.2 15.4 112 118-243 14-134 (185)
7 cd03424 ADPRase_NUDT5 ADP-ribo 99.6 1.4E-14 3E-19 116.7 11.4 87 144-245 2-88 (137)
8 cd04683 Nudix_Hydrolase_24 Mem 99.5 1.1E-13 2.5E-18 108.8 9.4 64 146-214 2-65 (120)
9 PRK09438 nudB dihydroneopterin 99.5 2.3E-13 5.1E-18 111.5 9.4 92 143-243 6-103 (148)
10 PRK10707 putative NUDIX hydrol 99.4 5.1E-13 1.1E-17 115.9 10.5 72 140-216 26-100 (190)
11 TIGR02705 nudix_YtkD nucleosid 99.4 6.9E-13 1.5E-17 112.1 10.5 84 141-245 21-104 (156)
12 cd04691 Nudix_Hydrolase_32 Mem 99.4 1E-12 2.2E-17 104.2 10.4 72 160-244 12-84 (117)
13 cd04700 DR1025_like DR1025 fro 99.4 1.9E-12 4.2E-17 106.2 10.9 58 145-207 14-71 (142)
14 cd03426 CoAse Coenzyme A pyrop 99.4 1.7E-12 3.7E-17 108.3 10.6 87 145-243 3-90 (157)
15 cd03672 Dcp2p mRNA decapping e 99.4 1.3E-12 2.8E-17 108.3 9.5 78 147-243 4-81 (145)
16 cd04679 Nudix_Hydrolase_20 Mem 99.4 3.3E-12 7.2E-17 101.4 10.7 61 146-211 4-64 (125)
17 cd04680 Nudix_Hydrolase_21 Mem 99.4 3E-12 6.4E-17 100.2 9.5 81 146-244 2-82 (120)
18 cd03675 Nudix_Hydrolase_2 Cont 99.4 3.1E-12 6.6E-17 102.6 9.6 54 153-211 7-60 (134)
19 cd04684 Nudix_Hydrolase_25 Con 99.4 3.4E-12 7.4E-17 100.5 9.7 75 160-244 12-89 (128)
20 cd04681 Nudix_Hydrolase_22 Mem 99.4 3.9E-12 8.4E-17 101.3 10.1 84 146-242 3-87 (130)
21 cd03671 Ap4A_hydrolase_plant_l 99.4 4.5E-12 9.7E-17 104.2 10.4 58 144-208 3-60 (147)
22 cd04682 Nudix_Hydrolase_23 Mem 99.4 4.8E-12 1.1E-16 100.4 9.8 84 147-245 3-88 (122)
23 cd03673 Ap6A_hydrolase Diadeno 99.4 4.9E-12 1.1E-16 100.0 9.4 84 146-244 3-89 (131)
24 PF00293 NUDIX: NUDIX domain; 99.3 3.3E-12 7.2E-17 100.5 8.4 85 145-243 3-90 (134)
25 cd04511 Nudix_Hydrolase_4 Memb 99.3 7.1E-12 1.5E-16 100.8 10.2 70 160-244 25-94 (130)
26 cd04673 Nudix_Hydrolase_15 Mem 99.3 8E-12 1.7E-16 97.8 9.8 47 160-208 12-58 (122)
27 cd04662 Nudix_Hydrolase_5 Memb 99.3 1.4E-11 3E-16 100.9 11.2 65 147-214 3-71 (126)
28 cd03427 MTH1 MutT homolog-1 (M 99.3 1.2E-11 2.7E-16 99.3 10.0 81 148-243 4-85 (137)
29 cd04669 Nudix_Hydrolase_11 Mem 99.3 1.4E-11 3.1E-16 98.1 9.7 56 147-208 3-58 (121)
30 cd04671 Nudix_Hydrolase_13 Mem 99.3 3E-11 6.6E-16 97.1 10.5 54 153-210 8-61 (123)
31 cd04696 Nudix_Hydrolase_37 Mem 99.3 3.6E-11 7.8E-16 95.6 10.6 58 147-211 5-62 (125)
32 cd03429 NADH_pyrophosphatase N 99.3 1.2E-11 2.6E-16 100.1 7.7 56 152-214 7-62 (131)
33 cd04690 Nudix_Hydrolase_31 Mem 99.3 2.8E-11 6.1E-16 94.7 9.3 79 153-244 8-86 (118)
34 cd04670 Nudix_Hydrolase_12 Mem 99.3 3.8E-11 8.2E-16 95.6 10.1 56 146-207 4-59 (127)
35 cd04687 Nudix_Hydrolase_28 Mem 99.3 4.5E-11 9.8E-16 95.4 10.3 52 160-214 13-64 (128)
36 PLN02325 nudix hydrolase 99.3 5.8E-11 1.3E-15 98.1 11.1 50 160-211 21-70 (144)
37 cd04697 Nudix_Hydrolase_38 Mem 99.3 3.7E-11 8E-16 96.2 9.4 83 146-243 2-86 (126)
38 cd04695 Nudix_Hydrolase_36 Mem 99.3 3.7E-11 8.1E-16 96.7 9.5 73 160-243 15-87 (131)
39 PRK15472 nucleoside triphospha 99.2 7.6E-11 1.6E-15 95.9 11.1 52 153-207 11-63 (141)
40 cd03428 Ap4A_hydrolase_human_l 99.2 3.5E-11 7.6E-16 95.7 8.7 57 146-208 4-60 (130)
41 cd04692 Nudix_Hydrolase_33 Mem 99.2 5.2E-11 1.1E-15 97.5 9.8 90 146-245 4-100 (144)
42 cd03674 Nudix_Hydrolase_1 Memb 99.2 5.8E-11 1.3E-15 96.6 9.9 54 146-207 4-58 (138)
43 cd03430 GDPMH GDP-mannose glyc 99.2 8.9E-11 1.9E-15 96.8 10.7 59 146-209 14-72 (144)
44 cd04699 Nudix_Hydrolase_39 Mem 99.2 6.5E-11 1.4E-15 93.3 9.3 53 153-208 9-62 (129)
45 cd04664 Nudix_Hydrolase_7 Memb 99.2 5.4E-11 1.2E-15 94.9 8.7 56 146-207 3-60 (129)
46 cd04666 Nudix_Hydrolase_9 Memb 99.2 1.3E-10 2.8E-15 93.5 10.7 56 147-207 3-58 (122)
47 PRK00714 RNA pyrophosphohydrol 99.2 1.2E-10 2.5E-15 97.5 10.4 91 145-244 9-104 (156)
48 cd04672 Nudix_Hydrolase_14 Mem 99.2 8.4E-11 1.8E-15 93.4 9.0 47 160-211 14-60 (123)
49 cd04693 Nudix_Hydrolase_34 Mem 99.2 6.9E-11 1.5E-15 94.2 8.1 63 147-214 3-67 (127)
50 cd04688 Nudix_Hydrolase_29 Mem 99.2 1.4E-10 2.9E-15 92.2 9.6 71 160-243 13-84 (126)
51 cd04689 Nudix_Hydrolase_30 Mem 99.2 1.5E-10 3.3E-15 91.9 9.8 72 160-244 13-85 (125)
52 cd04665 Nudix_Hydrolase_8 Memb 99.2 2.1E-10 4.6E-15 92.4 10.3 78 146-244 2-79 (118)
53 COG1051 ADP-ribose pyrophospha 99.2 1.7E-10 3.7E-15 95.9 9.8 46 160-207 22-67 (145)
54 cd04677 Nudix_Hydrolase_18 Mem 99.2 2.4E-10 5.1E-15 90.9 10.0 55 146-208 9-63 (132)
55 PRK00241 nudC NADH pyrophospha 99.2 9.4E-11 2E-15 106.1 8.3 68 160-243 144-211 (256)
56 KOG3084 NADH pyrophosphatase I 99.2 5.3E-11 1.1E-15 109.9 6.5 66 138-207 180-245 (345)
57 cd04678 Nudix_Hydrolase_19 Mem 99.2 3.4E-10 7.4E-15 90.1 10.5 57 146-207 4-60 (129)
58 cd04676 Nudix_Hydrolase_17 Mem 99.1 4E-10 8.6E-15 88.2 9.9 55 146-208 4-58 (129)
59 PRK15393 NUDIX hydrolase YfcD; 99.1 3.3E-10 7.2E-15 97.0 10.1 82 145-243 38-123 (180)
60 cd04686 Nudix_Hydrolase_27 Mem 99.1 3.3E-10 7.2E-15 91.5 9.2 52 146-206 2-53 (131)
61 cd02883 Nudix_Hydrolase Nudix 99.1 5.6E-10 1.2E-14 85.3 10.0 55 147-207 3-57 (123)
62 cd03425 MutT_pyrophosphohydrol 99.1 6.7E-10 1.5E-14 86.0 10.0 56 149-207 5-60 (124)
63 cd04674 Nudix_Hydrolase_16 Mem 99.1 7.8E-10 1.7E-14 89.4 10.5 52 161-214 17-68 (118)
64 PRK15434 GDP-mannose mannosyl 99.1 2E-10 4.4E-15 97.1 7.5 57 146-207 19-75 (159)
65 TIGR00586 mutt mutator mutT pr 99.1 9.2E-10 2E-14 86.9 10.8 54 151-207 10-63 (128)
66 cd02885 IPP_Isomerase Isopente 99.1 5.4E-10 1.2E-14 93.9 9.3 61 146-210 32-94 (165)
67 PRK10546 pyrimidine (deoxy)nuc 99.1 8.9E-10 1.9E-14 88.2 10.0 52 154-208 12-63 (135)
68 PRK10776 nucleoside triphospha 99.1 1.6E-09 3.4E-14 85.2 10.9 57 148-207 7-63 (129)
69 cd04667 Nudix_Hydrolase_10 Mem 99.0 1E-09 2.2E-14 85.8 8.7 47 160-214 12-58 (112)
70 cd04685 Nudix_Hydrolase_26 Mem 99.0 3.5E-09 7.6E-14 86.6 11.2 57 146-206 2-59 (133)
71 cd03676 Nudix_hydrolase_3 Memb 99.0 2.2E-09 4.8E-14 91.2 9.7 91 146-243 34-130 (180)
72 cd04694 Nudix_Hydrolase_35 Mem 99.0 1.3E-09 2.8E-14 90.4 7.7 59 146-208 3-62 (143)
73 PLN02709 nudix hydrolase 99.0 1.5E-09 3.2E-14 96.7 8.5 65 143-207 32-100 (222)
74 PRK05379 bifunctional nicotina 99.0 2.8E-09 6.1E-14 99.9 10.5 60 147-210 204-263 (340)
75 PRK03759 isopentenyl-diphospha 99.0 3.3E-09 7.2E-14 90.9 9.5 58 146-207 36-95 (184)
76 TIGR02150 IPP_isom_1 isopenten 98.8 1.8E-08 3.8E-13 84.4 9.5 63 146-214 29-93 (158)
77 cd04663 Nudix_Hydrolase_6 Memb 98.8 2.7E-08 5.9E-13 81.4 9.9 31 175-206 25-55 (126)
78 cd04661 MRP_L46 Mitochondrial 98.8 6.5E-09 1.4E-13 84.3 5.7 45 160-207 14-58 (132)
79 COG0494 MutT NTP pyrophosphohy 98.8 2.7E-08 5.9E-13 76.9 8.4 43 161-207 26-69 (161)
80 PRK08999 hypothetical protein; 98.7 5.8E-08 1.3E-12 88.9 10.3 54 151-207 11-64 (312)
81 KOG4432 Uncharacterized NUDIX 98.7 2E-08 4.3E-13 92.5 5.6 91 142-244 24-139 (405)
82 COG2816 NPY1 NTP pyrophosphohy 98.6 6.8E-08 1.5E-12 88.5 5.5 76 140-231 139-214 (279)
83 KOG4432 Uncharacterized NUDIX 98.5 4.2E-07 9.2E-12 83.9 7.6 100 132-243 217-343 (405)
84 KOG3069 Peroxisomal NUDIX hydr 98.4 1.1E-06 2.3E-11 78.7 8.5 63 145-207 44-107 (246)
85 cd03670 ADPRase_NUDT9 ADP-ribo 98.4 9E-07 1.9E-11 77.0 6.5 46 156-206 46-91 (186)
86 PLN02791 Nudix hydrolase homol 98.3 2E-06 4.3E-11 88.5 9.8 89 146-243 34-127 (770)
87 PLN02552 isopentenyl-diphospha 98.0 5.8E-05 1.3E-09 68.4 9.9 92 146-242 58-174 (247)
88 KOG2839 Diadenosine and diphos 97.9 2.2E-05 4.7E-10 65.7 6.4 45 159-207 24-68 (145)
89 KOG0648 Predicted NUDIX hydrol 97.7 4.3E-05 9.2E-10 70.7 4.5 58 146-207 117-175 (295)
90 COG4119 Predicted NTP pyrophos 97.6 0.0001 2.2E-09 60.8 5.3 41 173-215 35-75 (161)
91 cd03431 DNA_Glycosylase_C DNA 96.8 0.004 8.6E-08 47.8 6.3 48 154-204 11-58 (118)
92 PLN02839 nudix hydrolase 95.4 0.077 1.7E-06 50.9 8.5 67 146-215 205-276 (372)
93 COG1443 Idi Isopentenyldiphosp 95.0 0.084 1.8E-06 45.9 6.7 92 146-245 35-129 (185)
94 PF13869 NUDIX_2: Nucleotide h 94.8 0.44 9.5E-06 41.8 10.7 88 150-243 49-144 (188)
95 KOG4195 Transient receptor pot 94.6 0.037 8E-07 49.8 3.6 30 173-203 149-178 (275)
96 KOG2937 Decapping enzyme compl 89.8 0.12 2.6E-06 48.8 0.6 49 153-207 90-138 (348)
97 KOG1689 mRNA cleavage factor I 89.2 1.4 3E-05 38.4 6.6 92 146-243 71-170 (221)
98 PF14815 NUDIX_4: NUDIX domain 88.0 0.55 1.2E-05 36.5 3.2 52 152-207 4-55 (114)
99 PF13355 DUF4101: Protein of u 49.4 64 0.0014 25.7 6.2 50 64-116 16-67 (117)
100 COG4112 Predicted phosphoester 48.8 15 0.00034 31.9 2.6 27 180-206 97-129 (203)
101 PF03487 IL13: Interleukin-13; 45.0 20 0.00043 24.0 2.1 24 178-202 13-36 (43)
102 PF14443 DBC1: DBC1 33.2 53 0.0011 27.2 3.3 40 175-214 27-67 (126)
103 KOG0142 Isopentenyl pyrophosph 28.2 49 0.0011 29.7 2.5 39 179-217 94-135 (225)
104 PF06615 DUF1147: Protein of u 24.0 73 0.0016 22.2 2.2 23 162-184 17-39 (59)
105 KOG4313 Thiamine pyrophosphoki 21.5 1.3E+02 0.0028 28.0 3.9 48 166-214 153-205 (306)
No 1
>PLN03143 nudix hydrolase; Provisional
Probab=100.00 E-value=1.1e-52 Score=384.30 Aligned_cols=212 Identities=76% Similarity=1.110 Sum_probs=193.2
Q ss_pred eeeeecCCCCCCCCceeEEEeCCCCCCCeEEEeCCCCCHHhHhhhhcCchHHHHHHHhhhhcccccCCCcceEEEEEeeE
Q 025584 32 LVCSKMPTESSPSPLTHSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGV 111 (250)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~W~~~l~~~~~l~~~~~~~L~~i~v~~v 111 (250)
.+.++|+++++ ++++||+||++++++|+|+++||+|++|+.+++++++|++|++++++++++|++++|.||+|+||+|
T Consensus 18 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (291)
T PLN03143 18 HKEASSSSSSS--PLTHSITLPGQPGQPVLVVAAPGISSSDFRKAIDSSLFRQWLKNLQSESGILAYGSMSLKQVLIQGV 95 (291)
T ss_pred eehhccCCCCC--CceeEEEccCCCCCceeEecCCCCCHHHHHhHhcChHHHHHHHHhhhccccccCCCceeEEEEEEEE
Confidence 34445555454 7999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccccEEEEEEEEEEcCCCceeeeEEEEcCCEEEEEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHH
Q 025584 112 DMFGKRIGFLKFKADIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFV 191 (250)
Q Consensus 112 d~fg~~~gf~kl~~d~~~~~~G~~~p~~v~~rg~aV~VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~ 191 (250)
|+||+|.||+++++|.++.+||+..+++++.++++|+|+++++.++++++||++|||+|.+.+.||+|||++|+++|+++
T Consensus 96 d~fg~~~gflkv~~d~~~l~~G~~~~~~v~~rg~aVaVL~~l~~~ge~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~ 175 (291)
T PLN03143 96 DMFGKRIGFLKFKADIIDKETGQKVPGIVFARGPAVAVLILLESEGETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFV 175 (291)
T ss_pred ecccCceeEEEEEEEEEECCCCCEeeEEEEEcCCeEEEEEEEeCCCCEEEEEEEeEecCCCcEEEEecccccCCCCCCHH
Confidence 99999999999999999999999999999999999999988776666789999999999999999999999998557999
Q ss_pred HHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCccccceEEEEEEEce
Q 025584 192 GTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAVCSFFLHSFFLFLSV 245 (250)
Q Consensus 192 ~AA~REL~EETGl~i~~~~L~~L~~l~~~~~~~~~~pspG~~dE~i~lFl~~~~ 245 (250)
+||+||++|||||.+...++..++.++++.+...+||+||+|||.+++|++.+.
T Consensus 176 ~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~~v~pspG~~dE~i~Lfla~~~ 229 (291)
T PLN03143 176 GTAVREVEEETGIKLKLEDMVDLTAFLDPSTGCRMFPSPGGCDEEISLFLYRGH 229 (291)
T ss_pred HHHHHHHHHHHCCccccceEEEeeeccccCcCceEEecCCccCCeEEEEEEccc
Confidence 999999999999998767888887666666677999999999999999998754
No 2
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.92 E-value=9.8e-24 Score=182.97 Aligned_cols=123 Identities=22% Similarity=0.334 Sum_probs=102.9
Q ss_pred EEEEeeEeeecccccEEEEEEEE--EEcCCCce--eeeEEEEcCCEEEEEEEEcCCCceEEEEEEeeecCC------CCc
Q 025584 105 QVLIQGVDMFGKRIGFLKFKADI--FCKETGQK--VPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPT------GRV 174 (250)
Q Consensus 105 ~i~v~~vd~fg~~~gf~kl~~d~--~~~~~G~~--~p~~v~~rg~aV~VL~il~~~~~~~VlLvrQ~R~p~------~~~ 174 (250)
+|+|.+...+. .+|++++.+. +..+||+. ..+.++.++++|+|+++ +.+++ ++||++|||+|+ +++
T Consensus 4 ~~~~~~~~~~~--~~~~~v~~~~~~~~~pdG~~~~~~r~vv~~~~~v~Vl~~-~~~~~-~vvLvrQyR~~v~~~~~~~~~ 79 (191)
T PRK15009 4 QITLIKDKILS--DNYFTLHNITYDLTRKDGEVIRHKREVYDRGNGATILLY-NAKKK-TVVLIRQFRVATWVNGNESGQ 79 (191)
T ss_pred ceEEEEEEEEe--CCeEEEEEEEEEEECCCCCccceEEEEEEECCEEEEEEE-ECCCC-EEEEEEcccccccccCCCCce
Confidence 35566666664 7899999976 45699985 56789999999999975 54332 599999999998 888
Q ss_pred EEEecceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCccccceEEEEEEEc
Q 025584 175 ILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAVCSFFLHSFFLFLS 244 (250)
Q Consensus 175 ~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L~~l~~~~~~~~~~pspG~~dE~i~lFl~~~ 244 (250)
.||+|||.+|++ ++++||+|||+||||+.+ .++..+ ..+|++||+++|.+|+|+++.
T Consensus 80 ~lElPAG~vd~~--~p~~aA~REL~EETGy~a--~~~~~l---------~~~~~spG~s~e~~~lf~a~~ 136 (191)
T PRK15009 80 LIETCAGLLDND--EPEVCIRKEAIEETGYEV--GEVRKL---------FELYMSPGGVTELIHFFIAEY 136 (191)
T ss_pred EEEEeccccCCC--CHHHHHHHHHHHhhCCcc--ceEEEe---------eEEEcCCcccCcEEEEEEEEE
Confidence 999999999963 699999999999999997 478777 579999999999999999974
No 3
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=99.91 E-value=9.1e-24 Score=182.61 Aligned_cols=154 Identities=38% Similarity=0.529 Sum_probs=115.7
Q ss_pred ceeEEEeCCCCCCCeEEEeCCCCCHHhHhhhhcCchHHHHHHHhhhhcccccCCCcceEEEEEeeEeeecccccEEEEEE
Q 025584 46 LTHSITIPSQLSQPVHVVAAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLLKQVLIQGVDMFGKRIGFLKFKA 125 (250)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~W~~~l~~~~~l~~~~~~~L~~i~v~~vd~fg~~~gf~kl~~ 125 (250)
++ ++++|++.+.|+-++..... .++.. . ..+. .+-+|..|++|.++ |++|+-..|
T Consensus 6 ~~-~i~l~sq~ne~~~ss~~~kp--~~i~~--------~--~~ie-----~~~kWi~Lkkv~~q--D~~GKir~w----- 60 (225)
T KOG3041|consen 6 LT-SITLPSQPNEPTMSSATGKP--SKIIE--------V--EDIE-----SDGKWIRLKKVLYQ--DPTGKIRDW----- 60 (225)
T ss_pred ce-eeeccCCCCCceeecccCCc--hheee--------e--eccc-----CCccEEEEEEEEEE--cCCCceeee-----
Confidence 44 99999887766666655432 12211 1 1110 45679999988888 899952221
Q ss_pred EEEEcCCCceeeeEEEEcCCEEEEEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCc
Q 025584 126 DIFCKETGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQ 205 (250)
Q Consensus 126 d~~~~~~G~~~p~~v~~rg~aV~VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~ 205 (250)
..++..++ +..++++|+|++++..+++.++||++|||+|.|++++|+|||+||+| |++++||+|||+|||||.
T Consensus 61 -----es~~Rttr-~ea~~dgVaIl~il~~dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~g-e~~~~aAiREl~EEtGy~ 133 (225)
T KOG3041|consen 61 -----ESVQRTTR-VEARADGVAILAILESDGKPYIVLVKQFRPPTGKICIELPAGLIDDG-EDFEGAAIRELEEETGYK 133 (225)
T ss_pred -----ehheeccc-ccccCCeEEEEEEEecCCcEEEEEEEeecCCCCcEEEEcccccccCC-CchHHHHHHHHHHHhCcc
Confidence 13344555 77889999999999999999999999999999999999999999997 699999999999999998
Q ss_pred ccccceeeccccccCCCCceeecCCccccceEEEEEE
Q 025584 206 LKLEDMIDLTAFLYPSTGCKFFPSAVCSFFLHSFFLF 242 (250)
Q Consensus 206 i~~~~L~~L~~l~~~~~~~~~~pspG~~dE~i~lFl~ 242 (250)
-+ ... .+ ..+|.+||+++...++.++
T Consensus 134 gk-v~~--~s--------~~~f~DPGltn~~~~iv~v 159 (225)
T KOG3041|consen 134 GK-VDM--VS--------PTVFLDPGLTNCNLCIVVV 159 (225)
T ss_pred ce-eee--cc--------ccEEcCCCCCCCceEEEEE
Confidence 43 222 22 4689999998877777554
No 4
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.89 E-value=2.9e-22 Score=175.07 Aligned_cols=112 Identities=25% Similarity=0.334 Sum_probs=92.7
Q ss_pred cEEEEEEEEE--EcCCCc---eeeeEEEEcCCEEEEEEEEcCCCceEEEEEEeeecCCC-----CcEEEecceecCCCCC
Q 025584 119 GFLKFKADIF--CKETGQ---KVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPTG-----RVILELPAGMLDDDKG 188 (250)
Q Consensus 119 gf~kl~~d~~--~~~~G~---~~p~~v~~rg~aV~VL~il~~~~~~~VlLvrQ~R~p~~-----~~~~ElPAG~vD~geE 188 (250)
+|++++.+.+ ..++|. ...+.++.++++|+|+++ ++++. ++||++|||++++ .+.||+|||++|+| |
T Consensus 19 ~~~~v~~~~~~~~~~~G~~~~~~~~~vv~~~~~V~il~~-~~~~~-~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~g-E 95 (202)
T PRK10729 19 GFFSLDLYRFRHRLFNGEMSGEVRREIFERGHAAVLLPF-DPVRD-EVVLIEQIRIAAYDTSETPWLLEMVAGMIEEG-E 95 (202)
T ss_pred CeEEEEEEEEEEEecCCccccEEeEEEEEcCCeEEEEEE-ECCCC-EEEEEEeeecccccCCCCCeEEEccceEcCCC-C
Confidence 4776755443 346887 467889999999999986 44322 4999999999985 37999999999987 6
Q ss_pred CHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCccccceEEEEEEEc
Q 025584 189 DFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAVCSFFLHSFFLFLS 244 (250)
Q Consensus 189 t~~~AA~REL~EETGl~i~~~~L~~L~~l~~~~~~~~~~pspG~~dE~i~lFl~~~ 244 (250)
++++||+|||.|||||.+ .++..+ ..+|++||++++.+|+|+++.
T Consensus 96 ~p~~aA~REL~EETGy~a--~~~~~l---------~~~~~spg~~~e~~~~fla~~ 140 (202)
T PRK10729 96 SVEDVARREAIEEAGLIV--GRTKPV---------LSYLASPGGTSERSSIMVGEV 140 (202)
T ss_pred CHHHHHHHHHHHHhCcee--eEEEEE---------EEEEcCCCcCceEEEEEEEEE
Confidence 999999999999999997 467777 579999999999999999973
No 5
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.87 E-value=8.2e-21 Score=162.78 Aligned_cols=114 Identities=16% Similarity=0.113 Sum_probs=96.6
Q ss_pred ccEEEEEEEEEEcCCCceeeeEEEE--cCCEEEEEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHH
Q 025584 118 IGFLKFKADIFCKETGQKVPGIVFA--RGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAV 195 (250)
Q Consensus 118 ~gf~kl~~d~~~~~~G~~~p~~v~~--rg~aV~VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~ 195 (250)
++|++++.+.+..++|+...+.++. ++++|+|+++ +.++ ++||++|+|.+.+.+.||+|||.+|+| |++++||+
T Consensus 19 ~~~~~v~~~~~~~~~G~~~~~~~v~~~~~~~v~v~~~-~~~~--~vlLvrq~r~~~~~~~~elPaG~ve~g-E~~~~aA~ 94 (185)
T PRK11762 19 SRLFRVESVDLEFSNGVERVYERMRPSGRGAVMIVPI-LDDD--TLLLIREYAAGTERYELGFPKGLIDPG-ETPLEAAN 94 (185)
T ss_pred CCEEEEEEEEEEcCCCCEEEEEEEecCCCCEEEEEEE-eCCC--EEEEEEeecCCCCCcEEEccceeCCCC-CCHHHHHH
Confidence 6899999999888999886666555 4457888875 4444 499999999999999999999999997 69999999
Q ss_pred HHHHHHhCCcccccceeeccccccCCCCceeecCCccccceEEEEEEEcee
Q 025584 196 REVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAVCSFFLHSFFLFLSVE 246 (250)
Q Consensus 196 REL~EETGl~i~~~~L~~L~~l~~~~~~~~~~pspG~~dE~i~lFl~~~~e 246 (250)
||++||||+++ ..+..+ +.++++||.+++.+++|++...+
T Consensus 95 REl~EEtG~~~--~~l~~l---------~~~~~~~~~~~~~~~~f~a~~~~ 134 (185)
T PRK11762 95 RELKEEVGFGA--RQLTFL---------KELSLAPSYFSSKMNIVLAEDLY 134 (185)
T ss_pred HHHHHHHCCCC--cceEEE---------EEEecCCCccCcEEEEEEEEccc
Confidence 99999999997 477777 46899999999999999997643
No 6
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.85 E-value=1.5e-20 Score=162.16 Aligned_cols=112 Identities=29% Similarity=0.326 Sum_probs=92.4
Q ss_pred ccEEEEEEEE--EEcCCC--ceeeeEEEEcCCEEEEEEEEcCCCceEEEEEEeeecCC-----CCcEEEecceecCCCCC
Q 025584 118 IGFLKFKADI--FCKETG--QKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPT-----GRVILELPAGMLDDDKG 188 (250)
Q Consensus 118 ~gf~kl~~d~--~~~~~G--~~~p~~v~~rg~aV~VL~il~~~~~~~VlLvrQ~R~p~-----~~~~~ElPAG~vD~geE 188 (250)
+.|+.++.+. ...++| ....+.++.++++|+|+++...++ +++|++|||++. +.+.||+|||++|.| |
T Consensus 14 ~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~v~vl~~~~~~~--~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~g-E 90 (185)
T TIGR00052 14 GFFSLLHNIFYHRLFKGGESIRVTREIYDRGNAAAVLLYDPKKD--TVVLIEQFRIAAYVNGEEPWLLELSAGMVEKG-E 90 (185)
T ss_pred CCcEEEEEEEEEEeeCCCCCceEEEEEEEcCCeEEEEEEECCCC--EEEEEECceeeeeecCCcceEEEECcEecCCC-C
Confidence 6677776533 344466 457888999999999997533333 599999999998 577999999999997 6
Q ss_pred CHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCccccceEEEEEEE
Q 025584 189 DFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAVCSFFLHSFFLFL 243 (250)
Q Consensus 189 t~~~AA~REL~EETGl~i~~~~L~~L~~l~~~~~~~~~~pspG~~dE~i~lFl~~ 243 (250)
++++||+|||+||||+++. .+..+ ..+|++||.+++.+++|+++
T Consensus 91 ~~~~aA~REl~EEtG~~~~--~~~~~---------~~~~~~~g~~~~~~~~f~a~ 134 (185)
T TIGR00052 91 SPEDVARREAIEEAGYQVK--NLRKL---------LSFYSSPGGVTELIHLFIAE 134 (185)
T ss_pred CHHHHHHHHccccccceec--ceEEE---------EEEEcCCCCCcEEEEEEEEE
Confidence 9999999999999999984 66666 57899999999999999997
No 7
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.59 E-value=1.4e-14 Score=116.65 Aligned_cols=87 Identities=41% Similarity=0.547 Sum_probs=69.5
Q ss_pred CCEEEEEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCC
Q 025584 144 GPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTG 223 (250)
Q Consensus 144 g~aV~VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L~~l~~~~~~ 223 (250)
.++|+++++ +++++ ++|++|+|.+..+..|++|||.+|.| |++++||+||++||||+++. .+..++
T Consensus 2 ~~~v~v~~~-~~~~~--iLl~~~~~~~~~~~~w~~PgG~ve~g-Es~~~aa~RE~~EE~Gl~~~--~~~~~~-------- 67 (137)
T cd03424 2 PDAVAVLPY-DDDGK--VVLVRQYRPPVGGWLLELPAGLIDPG-EDPEEAARRELEEETGYEAG--DLEKLG-------- 67 (137)
T ss_pred CCEEEEEEE-cCCCe--EEEEEeeecCCCCEEEEeCCccCCCC-CCHHHHHHHHHHHHHCCCcc--ceEEEe--------
Confidence 467777764 66654 99999999887777999999999997 69999999999999999974 555553
Q ss_pred ceeecCCccccceEEEEEEEce
Q 025584 224 CKFFPSAVCSFFLHSFFLFLSV 245 (250)
Q Consensus 224 ~~~~pspG~~dE~i~lFl~~~~ 245 (250)
.++..+|.....+++|++...
T Consensus 68 -~~~~~~~~~~~~~~~~~~~~~ 88 (137)
T cd03424 68 -SFYPSPGFSDERIHLFLAEDL 88 (137)
T ss_pred -eEecCCcccCccEEEEEEEcc
Confidence 455567777888888887643
No 8
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.50 E-value=1.1e-13 Score=108.78 Aligned_cols=64 Identities=36% Similarity=0.435 Sum_probs=49.7
Q ss_pred EEEEEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccceeec
Q 025584 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDL 214 (250)
Q Consensus 146 aV~VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L 214 (250)
+|.+++ ..+++ +||++|.+.+.....|++|||++|.| |++.+||+||++||||+.+....+..+
T Consensus 2 ~v~~vi--~~~~~--vLL~~r~~~~~~~~~w~lPgG~ve~g-E~~~~aa~REl~EEtGl~v~~~~~~~~ 65 (120)
T cd04683 2 AVYVLL--RRDDE--VLLQRRANTGYMDGQWALPAGHLEKG-EDAVTAAVREAREEIGVTLDPEDLRLA 65 (120)
T ss_pred cEEEEE--EECCE--EEEEEccCCCCCCCeEeCCccccCCC-CCHHHHHHHHHHHHHCCccChhheEEE
Confidence 344443 33454 89998877665667899999999997 699999999999999999864455555
No 9
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.47 E-value=2.3e-13 Score=111.53 Aligned_cols=92 Identities=23% Similarity=0.301 Sum_probs=61.8
Q ss_pred cCCEEEEEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCC
Q 025584 143 RGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPST 222 (250)
Q Consensus 143 rg~aV~VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L~~l~~~~~ 222 (250)
.+.+|++++ ++.+++ +||++|.+. ...|++|||++|.| |++++||+||++||||+++....+..+... ...
T Consensus 6 ~~~~v~~vi-~~~~~~--vLl~~r~~~---~~~W~lPgG~ve~g-Es~~~aa~REl~EEtGl~~~~~~~~~~~~~--~~~ 76 (148)
T PRK09438 6 RPVSVLVVI-YTPDLG--VLMLQRADD---PDFWQSVTGSLEEG-ETPAQTAIREVKEETGIDVLAEQLTLIDCQ--RSI 76 (148)
T ss_pred CceEEEEEE-EeCCCe--EEEEEecCC---CCcEeCCcccCCCC-CCHHHHHHHHHHHHhCcCccccceeecccc--ccc
Confidence 456777775 466664 888876442 24799999999997 699999999999999999733333322100 000
Q ss_pred Cceeec------CCccccceEEEEEEE
Q 025584 223 GCKFFP------SAVCSFFLHSFFLFL 243 (250)
Q Consensus 223 ~~~~~p------spG~~dE~i~lFl~~ 243 (250)
...+++ .+|.+++..++|++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~f~~~ 103 (148)
T PRK09438 77 EYEIFPHWRHRYAPGVTRNTEHWFCLA 103 (148)
T ss_pred ccccchhhhhccccccCCceeEEEEEe
Confidence 011222 567788888999886
No 10
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.45 E-value=5.1e-13 Score=115.90 Aligned_cols=72 Identities=21% Similarity=0.380 Sum_probs=52.5
Q ss_pred EEEcCCEEEEEEEEcCCCceEEEEEE---eeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccc
Q 025584 140 VFARGPAVAVLILLDSEGETYAILTE---QVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTA 216 (250)
Q Consensus 140 v~~rg~aV~VL~il~~~~~~~VlLvr---Q~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L~~ 216 (250)
...++++|+|+++...++ ..+||++ |+|...| .|+||||++|++++++++||+||++||||++. ..+..++.
T Consensus 26 ~~~~~~aavvl~l~~~~~-~~vLl~~R~~~~r~~~G--~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~--~~~~~lg~ 100 (190)
T PRK10707 26 TLNQRQAAVLIPIVRRPQ-PTLLLTQRSIHLRKHAG--QVAFPGGAVDPTDASLIATALREAQEEVAIPP--SAVEVIGV 100 (190)
T ss_pred cccCCCeEEEEEEEECCC-CEEEEEEeCCcccCCCC--cEEcCCcccCCCcccHHHHHHHHHHHHHCCCc--cceEEEEE
Confidence 345567777777654333 3566666 3554444 68999999998767899999999999999986 46777743
No 11
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.44 E-value=6.9e-13 Score=112.13 Aligned_cols=84 Identities=23% Similarity=0.252 Sum_probs=68.2
Q ss_pred EEcCCEEEEEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccC
Q 025584 141 FARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYP 220 (250)
Q Consensus 141 ~~rg~aV~VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L~~l~~~ 220 (250)
..++++|+|+++ . ++ .++|++|++. .||+|||.+|+| |++++||.||++||||+.+ ..+..+
T Consensus 21 ~~~~~~V~ii~~-~-~~--~~LL~~~~~~-----~~elPgG~vE~g-Et~~eaA~REl~EETG~~~--~~~~~l------ 82 (156)
T TIGR02705 21 SPNPNHVLVIPR-Y-KD--QWLLTEHKRR-----GLEFPGGKVEPG-ETSKEAAIREVMEETGAIV--KELHYI------ 82 (156)
T ss_pred cCCCCEEEEEEE-E-CC--EEEEEEEcCC-----cEECCceecCCC-CCHHHHHHHHHHHHhCcEe--eeeEEE------
Confidence 345667877765 3 23 3889988742 499999999997 6999999999999999987 477777
Q ss_pred CCCceeecCCccccceEEEEEEEce
Q 025584 221 STGCKFFPSAVCSFFLHSFFLFLSV 245 (250)
Q Consensus 221 ~~~~~~~pspG~~dE~i~lFl~~~~ 245 (250)
+.+++++|.+++..++|+|...
T Consensus 83 ---g~~~~~~~~~~~~~~vf~A~~~ 104 (156)
T TIGR02705 83 ---GQYEVEGESTDFVKDVYFAEVS 104 (156)
T ss_pred ---EEEEecCCCcEEEEEEEEEEEe
Confidence 5688999999999999999754
No 12
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.43 E-value=1e-12 Score=104.17 Aligned_cols=72 Identities=17% Similarity=0.279 Sum_probs=53.8
Q ss_pred EEEEEEeeecCC-CCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCccccceEE
Q 025584 160 YAILTEQVRVPT-GRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAVCSFFLHS 238 (250)
Q Consensus 160 ~VlLvrQ~R~p~-~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L~~l~~~~~~~~~~pspG~~dE~i~ 238 (250)
+++|++|.+.+. ....|++|||++|.| |++++||+||++||||+++ ..+..+. .++..++ .+..++
T Consensus 12 ~vLL~rR~~~~~~~~g~w~lPgG~ve~g-E~~~~aa~REl~EEtGl~~--~~~~~l~---------~~~~~~~-~~~~~~ 78 (117)
T cd04691 12 KVLLERRSLTKNADPGKLNIPGGHIEAG-ESQEEALLREVQEELGVDP--LSYTYLC---------SLYHPTS-ELQLLH 78 (117)
T ss_pred EEEEEEeCCCCCCCCCeEECcceeecCC-CCHHHHHHHHHHHHHCCCc--ccceEEE---------EEeccCC-CeEEEE
Confidence 499999877653 567899999999997 6999999999999999986 2444552 3333333 456677
Q ss_pred EEEEEc
Q 025584 239 FFLFLS 244 (250)
Q Consensus 239 lFl~~~ 244 (250)
+|++..
T Consensus 79 ~~~~~~ 84 (117)
T cd04691 79 YYVVTF 84 (117)
T ss_pred EEEEEE
Confidence 777754
No 13
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.41 E-value=1.9e-12 Score=106.25 Aligned_cols=58 Identities=26% Similarity=0.461 Sum_probs=46.5
Q ss_pred CEEEEEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCccc
Q 025584 145 PAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLK 207 (250)
Q Consensus 145 ~aV~VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~ 207 (250)
.+|++++ ++.+++ +||+++ |.+.+...|++|||++|+| |++++||+||++||||+++.
T Consensus 14 ~av~~vv-~~~~~~--vLL~~r-~~~~~~~~w~lPgG~ve~g-Et~~~aa~REl~EEtGl~~~ 71 (142)
T cd04700 14 RAAGAVI-LNERND--VLLVQE-KGGPKKGLWHIPSGAVEDG-EFPQDAAVREACEETGLRVR 71 (142)
T ss_pred eeEEEEE-EeCCCc--EEEEEE-cCCCCCCeEECCceecCCC-CCHHHHHHHHHHHhhCceee
Confidence 4666665 465655 778765 5555667899999999997 69999999999999999975
No 14
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.41 E-value=1.7e-12 Score=108.32 Aligned_cols=87 Identities=31% Similarity=0.356 Sum_probs=58.5
Q ss_pred CEEEEEEEEcCCCceEEEEEEeeecC-CCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCC
Q 025584 145 PAVAVLILLDSEGETYAILTEQVRVP-TGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTG 223 (250)
Q Consensus 145 ~aV~VL~il~~~~~~~VlLvrQ~R~p-~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L~~l~~~~~~ 223 (250)
.||.|++ .+.+++.+++|++|.+.. .....|++|||++|.|+|++++||+||++||||+++. .+..++.
T Consensus 3 ~av~v~l-~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~--~~~~l~~------- 72 (157)
T cd03426 3 AAVLVLL-VEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPD--SVEVLGR------- 72 (157)
T ss_pred eEEEEEE-EeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCcc--ceEEEEE-------
Confidence 3555554 455544468888876543 2456899999999997469999999999999999974 4444432
Q ss_pred ceeecCCccccceEEEEEEE
Q 025584 224 CKFFPSAVCSFFLHSFFLFL 243 (250)
Q Consensus 224 ~~~~pspG~~dE~i~lFl~~ 243 (250)
+....+.....+++|++.
T Consensus 73 --~~~~~~~~~~~v~~~~~~ 90 (157)
T cd03426 73 --LPPYYTRSGFVVTPVVGL 90 (157)
T ss_pred --CCCccccCCCEEEEEEEE
Confidence 122222335566677665
No 15
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.40 E-value=1.3e-12 Score=108.28 Aligned_cols=78 Identities=22% Similarity=0.312 Sum_probs=55.8
Q ss_pred EEEEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCcee
Q 025584 147 VAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKF 226 (250)
Q Consensus 147 V~VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L~~l~~~~~~~~~ 226 (250)
+++++ ++.++. ++||++|++.+ .|++|||++|.| |++.+||+||++||||+++. .+.. ...
T Consensus 4 ~gaii-~~~~~~-~vLLvr~~~~~----~W~lPGG~ve~g-Es~~~AA~REl~EETGl~v~--~~~~----------~~~ 64 (145)
T cd03672 4 YGAII-LNEDLD-KVLLVKGWKSK----SWSFPKGKINKD-EDDHDCAIREVYEETGFDIS--KYID----------KDD 64 (145)
T ss_pred eEEEE-EeCCCC-EEEEEEecCCC----CEECCCccCCCC-cCHHHHHHHHHHHhhCccce--eccc----------cce
Confidence 44443 455432 58999887653 699999999997 69999999999999999874 2211 124
Q ss_pred ecCCccccceEEEEEEE
Q 025584 227 FPSAVCSFFLHSFFLFL 243 (250)
Q Consensus 227 ~pspG~~dE~i~lFl~~ 243 (250)
|...+..+..+++|++.
T Consensus 65 ~~~~~~~~~~~~~f~~~ 81 (145)
T cd03672 65 YIELIIRGQNVKLYIVP 81 (145)
T ss_pred eeecccCCcEEEEEEEe
Confidence 55555666677777775
No 16
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.39 E-value=3.3e-12 Score=101.41 Aligned_cols=61 Identities=28% Similarity=0.473 Sum_probs=47.6
Q ss_pred EEEEEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccce
Q 025584 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDM 211 (250)
Q Consensus 146 aV~VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L 211 (250)
+|++++ ++.+++ +||+++.+.+ +...|++|||++|.| |++++||+||++||||+++...++
T Consensus 4 ~~~~~i-~~~~~~--vLL~~r~~~~-~~~~w~lPgG~ve~g-Et~~eaa~RE~~EEtGl~~~~~~~ 64 (125)
T cd04679 4 GCGAAI-LRDDGK--LLLVKRLRAP-EAGHWGIPGGKVDWM-EAVEDAVVREIEEETGLSIHSTRL 64 (125)
T ss_pred EEEEEE-ECCCCE--EEEEEecCCC-CCCeEeCCeeeccCC-CCHHHHHHHHHHHHHCCCcccceE
Confidence 455554 465554 8898887654 456899999999997 699999999999999999864333
No 17
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.38 E-value=3e-12 Score=100.16 Aligned_cols=81 Identities=27% Similarity=0.315 Sum_probs=55.2
Q ss_pred EEEEEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 025584 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK 225 (250)
Q Consensus 146 aV~VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L~~l~~~~~~~~ 225 (250)
+|.+++ ++.+++ ++|+++.+.+ .|++|||.++.| |++++||+||++||||+.+. ..+..++ .
T Consensus 2 ~~~~~i-~~~~~~--vLL~~r~~~~----~w~~PgG~ve~g-Et~~~aa~REl~EEtG~~~~-~~~~~~~---------~ 63 (120)
T cd04680 2 GARAVV-TDADGR--VLLVRHTYGP----GWYLPGGGLERG-ETFAEAARRELLEELGIRLA-VVAELLG---------V 63 (120)
T ss_pred ceEEEE-ECCCCe--EEEEEECCCC----cEeCCCCcCCCC-CCHHHHHHHHHHHHHCCccc-cccceEE---------E
Confidence 345554 466664 7888764322 799999999997 69999999999999999975 1222232 2
Q ss_pred eecCCccccceEEEEEEEc
Q 025584 226 FFPSAVCSFFLHSFFLFLS 244 (250)
Q Consensus 226 ~~pspG~~dE~i~lFl~~~ 244 (250)
++...+.....+++|.+..
T Consensus 64 ~~~~~~~~~~~~~~f~~~~ 82 (120)
T cd04680 64 YYHSASGSWDHVIVFRARA 82 (120)
T ss_pred EecCCCCCceEEEEEEecc
Confidence 3333334556777787754
No 18
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.37 E-value=3.1e-12 Score=102.62 Aligned_cols=54 Identities=30% Similarity=0.536 Sum_probs=44.0
Q ss_pred EcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccce
Q 025584 153 LDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDM 211 (250)
Q Consensus 153 l~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L 211 (250)
+..+++ +||++|.+. +...|++|||.+|.| |++.+||.||++||||+++....+
T Consensus 7 i~~~~~--vLlv~r~~~--~~~~w~~PgG~ve~g-Es~~~aa~REl~EEtGl~~~~~~~ 60 (134)
T cd03675 7 VERDGR--FLLVEEETD--GGLVFNQPAGHLEPG-ESLIEAAVRETLEETGWHVEPTAL 60 (134)
T ss_pred EEECCE--EEEEEEccC--CCceEECCCccCCCC-CCHHHHHHHHHHHHHCcccccceE
Confidence 344554 889888765 556899999999997 699999999999999999864444
No 19
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.37 E-value=3.4e-12 Score=100.49 Aligned_cols=75 Identities=23% Similarity=0.244 Sum_probs=53.7
Q ss_pred EEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCcc---ccce
Q 025584 160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAVC---SFFL 236 (250)
Q Consensus 160 ~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L~~l~~~~~~~~~~pspG~---~dE~ 236 (250)
++||+++.+.+ ....|++|||++|.| |++++||+||++||||+++.. +..++.. ...+++++. ....
T Consensus 12 ~vLl~~~~~~~-~~~~w~lPgG~ve~g-E~~~~aa~RE~~EEtGl~~~~--~~~~~~~------~~~~~~~~~~~~~~~~ 81 (128)
T cd04684 12 KLLLIQKNGGP-YEGRWDLPGGGIEPG-ESPEEALHREVLEETGLTVEI--GRRLGSA------SRYFYSPDGDYDAHHL 81 (128)
T ss_pred EEEEEEccCCC-CCCeEECCCcccCCC-CCHHHHHHHHHHHHhCcEeec--ceeeeEE------EEEEECCCCCeeccEE
Confidence 48999887765 567899999999997 699999999999999999753 3333211 124455544 2455
Q ss_pred EEEEEEEc
Q 025584 237 HSFFLFLS 244 (250)
Q Consensus 237 i~lFl~~~ 244 (250)
.++|.+..
T Consensus 82 ~~~f~~~~ 89 (128)
T cd04684 82 CVFYDARV 89 (128)
T ss_pred EEEEEEEE
Confidence 66677653
No 20
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.37 E-value=3.9e-12 Score=101.34 Aligned_cols=84 Identities=30% Similarity=0.553 Sum_probs=56.7
Q ss_pred EEEEEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 025584 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK 225 (250)
Q Consensus 146 aV~VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L~~l~~~~~~~~ 225 (250)
+|++++ .+.+++ ++|+++.+.+ ....|++|||+++.| |++.+||.||++||||+++. .+..+..+ ..
T Consensus 3 av~~~i-~~~~~~--vLL~~r~~~~-~~~~w~~PgG~ve~g-Es~~~aa~RE~~EEtGl~~~--~~~~~~~~------~~ 69 (130)
T cd04681 3 AVGVLI-LNEDGE--LLVVRRAREP-GKGTLDLPGGFVDPG-ESAEEALIREIREETGLKVT--ELSYLFSL------PN 69 (130)
T ss_pred eEEEEE-EcCCCc--EEEEEecCCC-CCCcEeCCceeecCC-CCHHHHHHHHHHHHhCCccc--ceeEEEee------cc
Confidence 455554 466665 8888876654 355899999999997 69999999999999999875 44444321 12
Q ss_pred eecCCccccceEEE-EEE
Q 025584 226 FFPSAVCSFFLHSF-FLF 242 (250)
Q Consensus 226 ~~pspG~~dE~i~l-Fl~ 242 (250)
.++..+.....+++ |++
T Consensus 70 ~~~~~~~~~~~~~~~~~~ 87 (130)
T cd04681 70 TYPYGGMEYDTLDLFFVC 87 (130)
T ss_pred eeeeCCceeEEEEEEEEE
Confidence 24444554444444 444
No 21
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.37 E-value=4.5e-12 Score=104.23 Aligned_cols=58 Identities=29% Similarity=0.568 Sum_probs=47.8
Q ss_pred CCEEEEEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccc
Q 025584 144 GPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKL 208 (250)
Q Consensus 144 g~aV~VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~ 208 (250)
+.+|++++ ++.+++ +||++|.+.+ ..|++|+|++|+| |++.+||+||++||||+++..
T Consensus 3 ~~~v~~ii-~~~~~~--vLL~~r~~~~---~~W~~PgG~~e~g-E~~~~aA~REv~EEtGl~~~~ 60 (147)
T cd03671 3 RPNVGVVL-FNEDGK--VFVGRRIDTP---GAWQFPQGGIDEG-EDPEQAALRELEEETGLDPDS 60 (147)
T ss_pred CceEEEEE-EeCCCE--EEEEEEcCCC---CCEECCcCCCCCC-cCHHHHHHHHHHHHHCCCcCc
Confidence 35667765 466654 9999987766 5799999999997 699999999999999999753
No 22
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.36 E-value=4.8e-12 Score=100.38 Aligned_cols=84 Identities=23% Similarity=0.294 Sum_probs=57.8
Q ss_pred EEEEEEEcCCCceEEEEEEeeecC--CCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCc
Q 025584 147 VAVLILLDSEGETYAILTEQVRVP--TGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGC 224 (250)
Q Consensus 147 V~VL~il~~~~~~~VlLvrQ~R~p--~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L~~l~~~~~~~ 224 (250)
|+++++.++ ++ +||+++.+.| .....|++|||+++.| |++++||.||++||||+++....+...
T Consensus 3 v~~~~~~~~-g~--vLl~~r~~~~~~~~~g~w~~PgG~ve~g-E~~~~aa~RE~~EE~Gl~~~~~~~~~~---------- 68 (122)
T cd04682 3 VALALLIGD-GR--LLLQLRDDKPGIPYPGHWDLPGGHREGG-ETPLECVLRELLEEIGLTLPESRIPWF---------- 68 (122)
T ss_pred eEEEEEEcC-CE--EEEEEccCCCCCCCCCcEeCCCccccCC-CCHHHHHHHHHHHHhCCccccccccee----------
Confidence 334444443 54 8888876653 2345899999999997 699999999999999999753333222
Q ss_pred eeecCCccccceEEEEEEEce
Q 025584 225 KFFPSAVCSFFLHSFFLFLSV 245 (250)
Q Consensus 225 ~~~pspG~~dE~i~lFl~~~~ 245 (250)
..|..+ ..++..++|++...
T Consensus 69 ~~~~~~-~~~~~~~~f~~~~~ 88 (122)
T cd04682 69 RVYPSA-SPPGTEHVFVVPLT 88 (122)
T ss_pred EecccC-CCCceEEEEEEEEe
Confidence 234433 45677788887643
No 23
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.35 E-value=4.9e-12 Score=100.00 Aligned_cols=84 Identities=26% Similarity=0.256 Sum_probs=56.2
Q ss_pred EEEEEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 025584 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK 225 (250)
Q Consensus 146 aV~VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L~~l~~~~~~~~ 225 (250)
+++++++...+++.+++|+++.+. ..|++|||++|.| |++++||.||++||||+++.. +..+..+
T Consensus 3 ~a~~ii~~~~~~~~~vLl~~~~~~----~~w~~PgG~v~~g-Es~~~aa~REl~EEtGl~~~~--~~~~~~~-------- 67 (131)
T cd03673 3 AAGGVVFRGSDGGIEVLLIHRPRG----DDWSLPKGKLEPG-ETPPEAAVREVEEETGIRAEV--GDPLGTI-------- 67 (131)
T ss_pred eEEEEEEEccCCCeEEEEEEcCCC----CcccCCCCccCCC-CCHHHHHHHHHhhhhCCceEe--cceEEEE--------
Confidence 344444433333346888887553 4799999999997 699999999999999998753 3333221
Q ss_pred eecC---CccccceEEEEEEEc
Q 025584 226 FFPS---AVCSFFLHSFFLFLS 244 (250)
Q Consensus 226 ~~ps---pG~~dE~i~lFl~~~ 244 (250)
.|+. ++.....+++|.+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T cd03673 68 RYWFSSSGKRVHKTVHWWLMRA 89 (131)
T ss_pred EEeccCCCCCcceEEEEEEEEE
Confidence 2222 335667777777653
No 24
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.35 E-value=3.3e-12 Score=100.53 Aligned_cols=85 Identities=28% Similarity=0.400 Sum_probs=60.3
Q ss_pred CEEEEEEEEcCCCceEEEEEEeeecCC-CCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCC
Q 025584 145 PAVAVLILLDSEGETYAILTEQVRVPT-GRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTG 223 (250)
Q Consensus 145 ~aV~VL~il~~~~~~~VlLvrQ~R~p~-~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L~~l~~~~~~ 223 (250)
.+|.+++ ++.++ +++|+++.+.+. ....|++|||++|.+ |++.+||+||+.||||+++....+...
T Consensus 3 ~~v~~ii-~~~~~--~vLl~~r~~~~~~~~~~~~~pgG~i~~~-E~~~~aa~REl~EE~g~~~~~~~~~~~--------- 69 (134)
T PF00293_consen 3 RAVGVII-FNEDG--KVLLIKRSRSPITFPGYWELPGGGIEPG-ESPEEAARRELKEETGLDVSPLELLGL--------- 69 (134)
T ss_dssp EEEEEEE-EETTT--EEEEEEESTTSSSSTTEEESSEEEECTT-SHHHHHHHHHHHHHHSEEEEEEEEEEE---------
T ss_pred CEEEEEE-EeCCc--EEEEEEecCCCCCCCCeEecceeeEEcC-CchhhhHHhhhhhcccceeccccccee---------
Confidence 3566665 46666 599999988763 456899999999996 799999999999999999854444333
Q ss_pred ceeecCCccc--cceEEEEEEE
Q 025584 224 CKFFPSAVCS--FFLHSFFLFL 243 (250)
Q Consensus 224 ~~~~pspG~~--dE~i~lFl~~ 243 (250)
..+..+... .+..++|++.
T Consensus 70 -~~~~~~~~~~~~~~~~~~~~~ 90 (134)
T PF00293_consen 70 -FSYPSPSGDPEGEIVIFFIAE 90 (134)
T ss_dssp -EEEEETTTESSEEEEEEEEEE
T ss_pred -eeecccCCCcccEEEEEEEEE
Confidence 233333332 3566666664
No 25
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.35 E-value=7.1e-12 Score=100.77 Aligned_cols=70 Identities=19% Similarity=0.261 Sum_probs=51.9
Q ss_pred EEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCccccceEEE
Q 025584 160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAVCSFFLHSF 239 (250)
Q Consensus 160 ~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L~~l~~~~~~~~~~pspG~~dE~i~l 239 (250)
++||++|.+.+ ....|++|||++|.| |++++||+||++||||+++.... .+ .++..++. ....++
T Consensus 25 ~vLL~kr~~~~-~~g~w~lPgG~ve~g-E~~~~a~~REl~EEtGl~~~~~~--~~----------~~~~~~~~-~~~~~~ 89 (130)
T cd04511 25 KVLLCRRAIEP-RHGFWTLPAGFMENG-ETTEQGALRETWEEAGARVEIDG--LY----------AVYSVPHI-SQVYMF 89 (130)
T ss_pred EEEEEEecCCC-CCCeEECCcccccCC-CCHHHHHHHHHHHHhCCEEEeee--EE----------EEEecCCc-eEEEEE
Confidence 49999987654 456899999999997 69999999999999999874222 22 34555554 345666
Q ss_pred EEEEc
Q 025584 240 FLFLS 244 (250)
Q Consensus 240 Fl~~~ 244 (250)
|+++.
T Consensus 90 f~~~~ 94 (130)
T cd04511 90 YRARL 94 (130)
T ss_pred EEEEE
Confidence 77754
No 26
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.34 E-value=8e-12 Score=97.77 Aligned_cols=47 Identities=23% Similarity=0.431 Sum_probs=40.2
Q ss_pred EEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccc
Q 025584 160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKL 208 (250)
Q Consensus 160 ~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~ 208 (250)
+++|++|.+.+ ++..|++|||+++.| |++++||.||++||||+++..
T Consensus 12 ~vLl~~r~~~~-~~~~w~~PgG~ie~g-E~~~~aa~RE~~EEtGl~~~~ 58 (122)
T cd04673 12 RVLLVRRANPP-DAGLWSFPGGKVELG-ETLEQAALRELLEETGLEAEV 58 (122)
T ss_pred EEEEEEEcCCC-CCCeEECCCcccCCC-CCHHHHHHHHHHHhhCcEeee
Confidence 48888887643 456899999999997 699999999999999999753
No 27
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.33 E-value=1.4e-11 Score=100.86 Aligned_cols=65 Identities=26% Similarity=0.341 Sum_probs=46.8
Q ss_pred EEEEEEEcCCCceEEEEEEeeecC----CCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccceeec
Q 025584 147 VAVLILLDSEGETYAILTEQVRVP----TGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDL 214 (250)
Q Consensus 147 V~VL~il~~~~~~~VlLvrQ~R~p----~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L 214 (250)
.+++++.-.+++.+++|++|. .+ .....|++|||++|.+ |++.+||+||++||||+++. ..+..+
T Consensus 3 ~g~v~~~~~~~~~~vlL~~~~-~~~~~~~~~~~W~lPgG~ie~~-E~~~~aA~REl~EEtGl~~~-~~~~~l 71 (126)
T cd04662 3 AGILLYRFRDGRIEVLLVHPG-GPFWANKDLGAWSIPKGEYTEG-EDPLLAAKREFSEETGFCVD-GPFIDL 71 (126)
T ss_pred EEEEEEEEcCCcEEEEEEEcc-CccccCCCCCEEECCcccCCCC-cCHHHHHHHHHHHHhCCcce-eeEEeE
Confidence 444443323344568888873 23 2345899999999997 69999999999999999875 445444
No 28
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.32 E-value=1.2e-11 Score=99.29 Aligned_cols=81 Identities=21% Similarity=0.257 Sum_probs=54.9
Q ss_pred EEEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceee
Q 025584 148 AVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFF 227 (250)
Q Consensus 148 ~VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L~~l~~~~~~~~~~ 227 (250)
+++++.+. ++ +||+++.+.+ ....|++|||.+|.| |++.+||+||++||||+++....+ ++. ..+
T Consensus 4 ~~~~i~~~-~~--vLL~~r~~~~-~~~~w~~PgG~ve~g-Es~~~aa~RE~~EEtGl~~~~~~~--~~~--------~~~ 68 (137)
T cd03427 4 TLCFIKDP-DK--VLLLNRKKGP-GWGGWNGPGGKVEPG-ETPEECAIRELKEETGLTIDNLKL--VGI--------IKF 68 (137)
T ss_pred EEEEEEEC-CE--EEEEEecCCC-CCCeEeCCceeCCCC-CCHHHHHHHHHHHhhCeEeecceE--EEE--------EEE
Confidence 34444443 44 8888776655 556899999999997 699999999999999999854333 321 123
Q ss_pred cCCc-cccceEEEEEEE
Q 025584 228 PSAV-CSFFLHSFFLFL 243 (250)
Q Consensus 228 pspG-~~dE~i~lFl~~ 243 (250)
..++ .....+++|++.
T Consensus 69 ~~~~~~~~~~~~~f~~~ 85 (137)
T cd03427 69 PFPGEEERYGVFVFLAT 85 (137)
T ss_pred EcCCCCcEEEEEEEEEC
Confidence 3333 345566667764
No 29
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.31 E-value=1.4e-11 Score=98.12 Aligned_cols=56 Identities=23% Similarity=0.531 Sum_probs=43.6
Q ss_pred EEEEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccc
Q 025584 147 VAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKL 208 (250)
Q Consensus 147 V~VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~ 208 (250)
|++++ ++.+++ +||+++.+. +...|++|||.+|.| |++++||+||++||||+++..
T Consensus 3 ~~~ii-~~~~~~--vLL~~r~~~--~~~~w~lPGG~ve~g-Es~~~a~~REl~EEtGl~~~~ 58 (121)
T cd04669 3 ASIVI-INDQGE--ILLIRRIKP--GKTYYVFPGGGIEEG-ETPEEAAKREALEELGLDVRV 58 (121)
T ss_pred eEEEE-EeCCCE--EEEEEEecC--CCCcEECCceeccCC-CCHHHHHHHHHHHhhCeeEee
Confidence 44443 354454 888887543 345899999999997 699999999999999999853
No 30
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.28 E-value=3e-11 Score=97.07 Aligned_cols=54 Identities=30% Similarity=0.469 Sum_probs=44.4
Q ss_pred EcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccc
Q 025584 153 LDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLED 210 (250)
Q Consensus 153 l~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~ 210 (250)
++.+++ ++|+++.+.+. +..|++|+|++|.| |++++||+||++||||+++...+
T Consensus 8 ~~~~~~--vLl~~r~~~~~-~~~w~lPgG~ve~g-Et~~~aa~REl~EEtG~~~~~~~ 61 (123)
T cd04671 8 LNNQGE--VLLIQEAKRSC-RGKWYLPAGRMEPG-ETIEEAVKREVKEETGLDCEPTT 61 (123)
T ss_pred EcCCCE--EEEEEecCCCC-CCeEECceeecCCC-CCHHHHHHHHHHHHHCCeeecce
Confidence 465554 89998887553 55899999999997 69999999999999999986443
No 31
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.28 E-value=3.6e-11 Score=95.60 Aligned_cols=58 Identities=26% Similarity=0.414 Sum_probs=43.9
Q ss_pred EEEEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccce
Q 025584 147 VAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDM 211 (250)
Q Consensus 147 V~VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L 211 (250)
|++++ .+.+++ ++|+++.+ ....|++|||++|.| |++++||+||++||||+++....+
T Consensus 5 v~~~i-~~~~~~--iLL~r~~~---~~~~w~lPGG~ve~g-Es~~~aa~REl~EEtGl~~~~~~~ 62 (125)
T cd04696 5 VGALI-YAPDGR--ILLVRTTK---WRGLWGVPGGKVEWG-ETLEEALKREFREETGLKLRDIKF 62 (125)
T ss_pred EEEEE-ECCCCC--EEEEEccC---CCCcEeCCceeccCC-CCHHHHHHHHHHHHhCCcccccce
Confidence 44443 465665 88887533 235799999999997 699999999999999998864443
No 32
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.27 E-value=1.2e-11 Score=100.07 Aligned_cols=56 Identities=29% Similarity=0.468 Sum_probs=44.5
Q ss_pred EEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccceeec
Q 025584 152 LLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDL 214 (250)
Q Consensus 152 il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L 214 (250)
+.+.++ ++||++|.+.+ ...|++|||+++.| |++++||+||++||||+++. .+..+
T Consensus 7 l~~~~~--~vLL~~r~~~~--~~~w~lPgG~ie~g-Et~~~aA~REl~EEtGl~~~--~~~~l 62 (131)
T cd03429 7 VIDGGD--RILLARQPRFP--PGMYSLLAGFVEPG-ESLEEAVRREVKEEVGIRVK--NIRYV 62 (131)
T ss_pred EEeCCC--EEEEEEecCCC--CCcCcCCcccccCC-CCHHHHHhhhhhhccCceee--eeEEE
Confidence 345444 48999887765 34689999999997 69999999999999999974 45555
No 33
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.27 E-value=2.8e-11 Score=94.67 Aligned_cols=79 Identities=19% Similarity=0.271 Sum_probs=52.6
Q ss_pred EcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCcc
Q 025584 153 LDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAVC 232 (250)
Q Consensus 153 l~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L~~l~~~~~~~~~~pspG~ 232 (250)
++.+++ +||++|. +...|++|||+++++ |++++||+||++||||+++....+..+..+.. ..+..++
T Consensus 8 ~~~~~~--vLl~~r~----~~~~w~~PgG~ve~~-Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~-----~~~~~~~- 74 (118)
T cd04690 8 LVRDGR--VLLVRKR----GTDVFYLPGGKIEAG-ETPLQALIRELSEELGLDLDPDSLEYLGTFRA-----PAANEPG- 74 (118)
T ss_pred EecCCe--EEEEEEC----CCCcEECCCCccCCC-CCHHHHHHHHHHHHHCCccChhheEEEEEEec-----ccccCCC-
Confidence 355554 7887763 234799999999997 69999999999999999876434666643211 0111222
Q ss_pred ccceEEEEEEEc
Q 025584 233 SFFLHSFFLFLS 244 (250)
Q Consensus 233 ~dE~i~lFl~~~ 244 (250)
....+++|++..
T Consensus 75 ~~~~~~~f~~~~ 86 (118)
T cd04690 75 VDVRATVYVAEL 86 (118)
T ss_pred cEEEEEEEEEcc
Confidence 345667777753
No 34
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.26 E-value=3.8e-11 Score=95.56 Aligned_cols=56 Identities=34% Similarity=0.505 Sum_probs=43.1
Q ss_pred EEEEEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCccc
Q 025584 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLK 207 (250)
Q Consensus 146 aV~VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~ 207 (250)
+|++++ ++.+++ +||+++.. . ....|++|||++|.| |++++||.||++||||+.+.
T Consensus 4 ~~~~~v-~~~~~~--vLl~~r~~-~-~~~~w~~PGG~ve~g-Et~~~aa~RE~~EE~Gl~~~ 59 (127)
T cd04670 4 GVGGLV-LNEKNE--VLVVQERN-K-TPNGWKLPGGLVDPG-EDIFDGAVREVLEETGIDTE 59 (127)
T ss_pred EEEEEE-EcCCCe--EEEEEccC-C-CCCcEECCCccCCCC-CCHHHHHHHHHHHHHCCCcc
Confidence 344444 465554 77776543 3 456899999999997 69999999999999999874
No 35
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.26 E-value=4.5e-11 Score=95.39 Aligned_cols=52 Identities=25% Similarity=0.360 Sum_probs=42.9
Q ss_pred EEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccceeec
Q 025584 160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDL 214 (250)
Q Consensus 160 ~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L 214 (250)
+++|+++.+. +...|++|||.+|.| |++++||.||+.||||+++...++..+
T Consensus 13 ~vLl~~r~~~--~~~~~~lPGG~ve~g-Et~~~aa~RE~~EEtGl~v~~~~~~~~ 64 (128)
T cd04687 13 KILLIKHHDD--GGVWYILPGGGQEPG-ETLEDAAHRECKEEIGIDVEIGPLLFV 64 (128)
T ss_pred EEEEEEEEcC--CCCeEECCCcccCCC-CCHHHHHHHHHHHHHCCccccCcEEEE
Confidence 4888887653 345799999999997 699999999999999999875565554
No 36
>PLN02325 nudix hydrolase
Probab=99.26 E-value=5.8e-11 Score=98.10 Aligned_cols=50 Identities=30% Similarity=0.486 Sum_probs=40.1
Q ss_pred EEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccce
Q 025584 160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDM 211 (250)
Q Consensus 160 ~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L 211 (250)
++||+++... .+...|.+|||++|.| |++++||+||++||||+++...++
T Consensus 21 ~vLL~rr~~~-~~~g~W~lPGG~ve~g-Es~~~aa~REv~EEtGl~v~~~~~ 70 (144)
T PLN02325 21 SVLLGRRRSS-IGDSTFALPGGHLEFG-ESFEECAAREVKEETGLEIEKIEL 70 (144)
T ss_pred EEEEEEecCC-CCCCeEECCceeCCCC-CCHHHHHHHHHHHHHCCCCcceEE
Confidence 4777766443 3456899999999997 699999999999999999864443
No 37
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.25 E-value=3.7e-11 Score=96.24 Aligned_cols=83 Identities=19% Similarity=0.280 Sum_probs=54.5
Q ss_pred EEEEEEEEcCCCceEEEEEEeeecC-CCCcEEEe-cceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCC
Q 025584 146 AVAVLILLDSEGETYAILTEQVRVP-TGRVILEL-PAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTG 223 (250)
Q Consensus 146 aV~VL~il~~~~~~~VlLvrQ~R~p-~~~~~~El-PAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L~~l~~~~~~ 223 (250)
++.|++ ++.+++ ++|+++.... .....|++ |||+++.| |++++||+||++||||+++. .+..+.
T Consensus 2 ~~~v~i-~~~~~~--iLl~~R~~~~~~~~g~w~~~~GG~ve~g-E~~~~aa~REl~EEtGl~~~--~l~~~~-------- 67 (126)
T cd04697 2 ATYIFV-FNSEGK--LCVHKRTLTKDWCPGYWDIAFGGVVQAG-ESYLQNAQRELEEELGIDGV--QLTPLG-------- 67 (126)
T ss_pred eEEEEE-EcCCCe--EEEEECCCCCCCCCCcccCcCCcccCCC-CCHHHHHHHHHHHHHCCCcc--ccEEee--------
Confidence 345554 476664 6664433222 12347999 58999997 69999999999999999874 555553
Q ss_pred ceeecCCccccceEEEEEEE
Q 025584 224 CKFFPSAVCSFFLHSFFLFL 243 (250)
Q Consensus 224 ~~~~pspG~~dE~i~lFl~~ 243 (250)
.++...+..+...++|.+.
T Consensus 68 -~~~~~~~~~~~~~~~f~~~ 86 (126)
T cd04697 68 -LFYYDTDGNRVWGKVFSCV 86 (126)
T ss_pred -EEEecCCCceEEEEEEEEE
Confidence 3333344445556677764
No 38
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.25 E-value=3.7e-11 Score=96.68 Aligned_cols=73 Identities=21% Similarity=0.260 Sum_probs=49.5
Q ss_pred EEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCccccceEEE
Q 025584 160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAVCSFFLHSF 239 (250)
Q Consensus 160 ~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L~~l~~~~~~~~~~pspG~~dE~i~l 239 (250)
++||+++.+. ....|.+|||+++.| |++.+||.||++||||+++. .+..... ...+|..++.......+
T Consensus 15 ~vLl~~r~~~--~~g~w~~PgG~ve~g-Es~~~aa~RE~~EEtGl~~~--~~~~~~~------~~~~~~~~~~~~~~~~~ 83 (131)
T cd04695 15 KVLLLKRVKT--LGGFWCHVAGGVEAG-ETAWQAALRELKEETGISLP--ELYNADY------LEQFYEANDNRILMAPV 83 (131)
T ss_pred EEEEEEecCC--CCCcEECCcccccCC-CCHHHHHHHHHHHHhCCCcc--ccccccc------eeeEeecCCceEEEEEE
Confidence 5888887654 344789999999997 69999999999999999874 2322110 12345544443444555
Q ss_pred EEEE
Q 025584 240 FLFL 243 (250)
Q Consensus 240 Fl~~ 243 (250)
|++.
T Consensus 84 f~~~ 87 (131)
T cd04695 84 FVGF 87 (131)
T ss_pred EEEE
Confidence 6654
No 39
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.24 E-value=7.6e-11 Score=95.87 Aligned_cols=52 Identities=21% Similarity=0.221 Sum_probs=40.0
Q ss_pred EcCCCceEEEEEEeeec-CCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCccc
Q 025584 153 LDSEGETYAILTEQVRV-PTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLK 207 (250)
Q Consensus 153 l~~~~~~~VlLvrQ~R~-p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~ 207 (250)
++.+++ +||+++... ......|++|||++|+| |++++||+||++||||+++.
T Consensus 11 i~~~~~--vLl~~R~~~~~~~~g~W~lPgG~ve~g-Es~~~aa~REl~EEtGl~~~ 63 (141)
T PRK15472 11 IQNDGA--YLLCKMADDRGVFPGQWALSGGGVEPG-ERIEEALRREIREELGEQLL 63 (141)
T ss_pred EecCCE--EEEEEecccCCCCCCceeCCcccCCCC-CCHHHHHHHHHHHHHCCcee
Confidence 344554 777765332 22346899999999997 69999999999999999874
No 40
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.24 E-value=3.5e-11 Score=95.66 Aligned_cols=57 Identities=26% Similarity=0.342 Sum_probs=42.4
Q ss_pred EEEEEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccc
Q 025584 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKL 208 (250)
Q Consensus 146 aV~VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~ 208 (250)
+++++++...+++.++||+++.. ..|++|||++++| |++.+||.||++||||+++..
T Consensus 4 ~~g~vi~~~~~~~~~vLl~~~~~-----~~w~~PgG~ve~g-Es~~~aa~REl~EEtGl~~~~ 60 (130)
T cd03428 4 SAGAIIYRRLNNEIEYLLLQASY-----GHWDFPKGHVEPG-EDDLEAALRETEEETGITAEQ 60 (130)
T ss_pred EEEEEEEEecCCCceEEEEEccC-----CcCcCCcCCCCCC-CCHHHHHHHHHHHHHCCChhh
Confidence 44555443333343567776543 4699999999997 699999999999999999753
No 41
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.24 E-value=5.2e-11 Score=97.47 Aligned_cols=90 Identities=21% Similarity=0.373 Sum_probs=56.6
Q ss_pred EEEEEEEEcCC-CceEEEEEEeeecCC---CCcEEEe-cceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccC
Q 025584 146 AVAVLILLDSE-GETYAILTEQVRVPT---GRVILEL-PAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYP 220 (250)
Q Consensus 146 aV~VL~il~~~-~~~~VlLvrQ~R~p~---~~~~~El-PAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L~~l~~~ 220 (250)
+|.+++ ++.+ ++.+++|.+ |.+. ....|++ |||++|.| |++++||+||++||||+.+....+..++.+.
T Consensus 4 ~v~~~v-~~~~~~~~~vLl~~--R~~~~~~~pg~W~~~~gG~ve~g-Et~~~aa~REl~EEtGl~~~~~~l~~~~~~~-- 77 (144)
T cd04692 4 TFHCWI-ITKDEGKGYVLLQK--RSANKKTYPGLWDISSAGHILAG-ETPLEDGIRELEEELGLDVSADDLIPLGTFK-- 77 (144)
T ss_pred EEEEEE-EEccCCCCEEEEEe--cCCCCCCCCCccccccCcccCCC-CCHHHHHHHHHHHHhCCCCChHHeEEeeEEE--
Confidence 455554 4544 222355544 4443 2348999 59999997 6999999999999999987655666554321
Q ss_pred CCCceeec-C-CccccceEEEEEEEce
Q 025584 221 STGCKFFP-S-AVCSFFLHSFFLFLSV 245 (250)
Q Consensus 221 ~~~~~~~p-s-pG~~dE~i~lFl~~~~ 245 (250)
..+. . .+..++..++|++...
T Consensus 78 ----~~~~~~~~~~~~~~~~~f~~~~~ 100 (144)
T cd04692 78 ----IEYDHIGKLIDREFHHVYLYELK 100 (144)
T ss_pred ----EeccccCCCccceEEEEEEEecc
Confidence 1111 2 2234556677887643
No 42
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.24 E-value=5.8e-11 Score=96.62 Aligned_cols=54 Identities=30% Similarity=0.548 Sum_probs=42.7
Q ss_pred EEEEEEEEcCC-CceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCccc
Q 025584 146 AVAVLILLDSE-GETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLK 207 (250)
Q Consensus 146 aV~VL~il~~~-~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~ 207 (250)
+|++++ ++.+ + ++||++|.+. ..|.+|||++|.| |++++||.||++||||+++.
T Consensus 4 ~~~~~v-~~~~~~--~vLLv~r~~~----~~w~lPgG~ve~g-E~~~~aa~REl~EEtGl~~~ 58 (138)
T cd03674 4 TASAFV-VNPDRG--KVLLTHHRKL----GSWLQPGGHIDPD-ESLLEAALRELREETGIELL 58 (138)
T ss_pred EEEEEE-EeCCCC--eEEEEEEcCC----CcEECCceecCCC-CCHHHHHHHHHHHHHCCCcc
Confidence 455555 3554 4 4888887542 3699999999997 69999999999999999875
No 43
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.23 E-value=8.9e-11 Score=96.79 Aligned_cols=59 Identities=14% Similarity=0.379 Sum_probs=45.5
Q ss_pred EEEEEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCccccc
Q 025584 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLE 209 (250)
Q Consensus 146 aV~VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~ 209 (250)
+|++++ .+.+++ +||+++.+.| ....|++|||++|.| |++++||+||++||||+++...
T Consensus 14 ~v~~vI-~~~~g~--vLl~~R~~~p-~~g~w~lPGG~ve~g-Es~~~aa~RE~~EE~Gl~v~~~ 72 (144)
T cd03430 14 SIDLIV-ENEDGQ--YLLGKRTNRP-AQGYWFVPGGRIRKN-ETLTEAFERIAKDELGLEFLIS 72 (144)
T ss_pred EEEEEE-EeCCCe--EEEEEccCCC-CCCcEECCCceecCC-CCHHHHHHHHHHHHHCCCcccc
Confidence 444544 365565 8887765543 345799999999997 6999999999999999998644
No 44
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.22 E-value=6.5e-11 Score=93.28 Aligned_cols=53 Identities=25% Similarity=0.396 Sum_probs=42.6
Q ss_pred EcCCCceEEEEEEeeecCC-CCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccc
Q 025584 153 LDSEGETYAILTEQVRVPT-GRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKL 208 (250)
Q Consensus 153 l~~~~~~~VlLvrQ~R~p~-~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~ 208 (250)
.+.+++ ++|+++.+.+. .+..|++|+|.++.| |++.+||.||++||||+++..
T Consensus 9 ~~~~~~--iLl~kr~~~~~~~~g~w~~PgG~ve~g-Es~~~aa~RE~~EE~Gl~~~~ 62 (129)
T cd04699 9 VKDVGR--ILILKRSKDERTAPGKWELPGGKVEEG-ETFEEALKREVYEETGLTVTP 62 (129)
T ss_pred ECCCCc--EEEEEecCCCCCCCCcCcCCccCccCC-CCHHHHHHHHHHHhhCcEEEe
Confidence 355454 88887765542 466899999999997 699999999999999998753
No 45
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.22 E-value=5.4e-11 Score=94.93 Aligned_cols=56 Identities=27% Similarity=0.284 Sum_probs=44.6
Q ss_pred EEEEEEEEcC--CCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCccc
Q 025584 146 AVAVLILLDS--EGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLK 207 (250)
Q Consensus 146 aV~VL~il~~--~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~ 207 (250)
+|+|+++ +. ++ +++|+++.+. ....|++|+|+++.| |++.+||.||++||||+.+.
T Consensus 3 ~~~v~~~-~~~~~~--~vLL~~r~~~--~~~~w~~PgG~ve~~-Es~~~aa~RE~~EE~Gl~~~ 60 (129)
T cd04664 3 SVLVVPY-RLTGEG--RVLLLRRSDK--YAGFWQSVTGGIEDG-ESPAEAARREVAEETGLDPE 60 (129)
T ss_pred EEEEEEE-EeCCCC--EEEEEEeCCC--CCCcccccCcccCCC-CCHHHHHHHHHHHHHCCChh
Confidence 4566654 54 44 4888887654 456899999999997 69999999999999999874
No 46
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.21 E-value=1.3e-10 Score=93.49 Aligned_cols=56 Identities=25% Similarity=0.288 Sum_probs=43.1
Q ss_pred EEEEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCccc
Q 025584 147 VAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLK 207 (250)
Q Consensus 147 V~VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~ 207 (250)
++++++...+++.++||+++.+. ..|.+|||++|.| |++++||+||++||||+++.
T Consensus 3 ~g~v~~~~~~~~~~vLLv~~~~~----~~w~~PgG~ve~~-E~~~~aa~RE~~EEtG~~~~ 58 (122)
T cd04666 3 AGAIPYRETGGEVEVLLVTSRRT----GRWIVPKGGPEKD-ESPAEAAAREAWEEAGVRGK 58 (122)
T ss_pred EEEEEEEEcCCceEEEEEEecCC----CeEECCCCCcCCC-CCHHHHHHHHHHHHhCCccc
Confidence 34444433333356888887654 4799999999997 69999999999999999874
No 47
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.20 E-value=1.2e-10 Score=97.51 Aligned_cols=91 Identities=20% Similarity=0.271 Sum_probs=60.3
Q ss_pred CEEEEEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccc----cC
Q 025584 145 PAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFL----YP 220 (250)
Q Consensus 145 ~aV~VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L~~l~----~~ 220 (250)
.+|++++ ++.+++ ++|++|.+. ...|++|+|.++.| |++++||.||++||||+++. .+..++.+. +.
T Consensus 9 ~~v~~~i-~~~~g~--vLL~~r~~~---~~~w~~P~G~~~~g-E~~~~aa~REl~EEtG~~~~--~~~~~~~~~~~~~y~ 79 (156)
T PRK00714 9 PNVGIIL-LNRQGQ--VFWGRRIGQ---GHSWQFPQGGIDPG-ETPEQAMYRELYEEVGLRPE--DVEILAETRDWLRYD 79 (156)
T ss_pred CeEEEEE-EecCCE--EEEEEEcCC---CCeEECCcccCCCC-cCHHHHHHHHHHHHhCCCcc--ceEEEEEcCCeEEec
Confidence 4666664 476665 888888653 25799999999997 69999999999999999874 333333210 00
Q ss_pred -CCCceeecCCccccceEEEEEEEc
Q 025584 221 -STGCKFFPSAVCSFFLHSFFLFLS 244 (250)
Q Consensus 221 -~~~~~~~pspG~~dE~i~lFl~~~ 244 (250)
+........+++.++..++|++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~fl~~~ 104 (156)
T PRK00714 80 LPKRLVRRSKGVYRGQKQKWFLLRL 104 (156)
T ss_pred CcHHHhhccCCcccCcEEEEEEEEe
Confidence 000000136666777777888753
No 48
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.20 E-value=8.4e-11 Score=93.36 Aligned_cols=47 Identities=28% Similarity=0.414 Sum_probs=39.0
Q ss_pred EEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccce
Q 025584 160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDM 211 (250)
Q Consensus 160 ~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L 211 (250)
++||++|.+ ...|++|||.++.| |++++||+||++||||+.+...++
T Consensus 14 ~vLL~~~~~----~~~w~~PGG~ve~g-Es~~~aa~REl~EEtG~~~~~~~~ 60 (123)
T cd04672 14 KILLVREKS----DGLWSLPGGWADVG-LSPAENVVKEVKEETGLDVKVRKL 60 (123)
T ss_pred EEEEEEEcC----CCcEeCCccccCCC-CCHHHHHHHHHHHHhCCeeeEeEE
Confidence 388888865 34799999999997 699999999999999998743333
No 49
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.19 E-value=6.9e-11 Score=94.21 Aligned_cols=63 Identities=29% Similarity=0.410 Sum_probs=45.4
Q ss_pred EEEEEEEcCCCceEEEEEEeeecC-CCCcEEEec-ceecCCCCCCHHHHHHHHHHHHhCCcccccceeec
Q 025584 147 VAVLILLDSEGETYAILTEQVRVP-TGRVILELP-AGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDL 214 (250)
Q Consensus 147 V~VL~il~~~~~~~VlLvrQ~R~p-~~~~~~ElP-AG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L 214 (250)
|.+++ ++.+++ ++|+++.+.. .....|++| ||+++.| |++ +||+||++||||+++....+..+
T Consensus 3 v~v~~-~~~~g~--vLl~~R~~~~~~~pg~w~~p~GG~ve~g-E~~-~aa~REl~EEtGl~~~~~~~~~~ 67 (127)
T cd04693 3 VHVCI-FNSKGE--LLLQKRSPNKDGWPGMWDLSVGGHVQAG-ETS-TAAEREVKEELGLELDFSELRPL 67 (127)
T ss_pred EEEEE-EeCCCe--EEEEEccCCCCCCCCcccccCCCcCCCC-CCH-HHHHHHHHHHhCCCcChhhcEEE
Confidence 44444 466664 7776654432 234589998 8999997 699 99999999999999865555544
No 50
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.19 E-value=1.4e-10 Score=92.24 Aligned_cols=71 Identities=14% Similarity=0.263 Sum_probs=48.5
Q ss_pred EEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCcc-ccceEE
Q 025584 160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAVC-SFFLHS 238 (250)
Q Consensus 160 ~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L~~l~~~~~~~~~~pspG~-~dE~i~ 238 (250)
+++|+++.+ ...|++|||.+|.| |++.+||.||+.||||+++....+ +..+ ...+...+. .++..+
T Consensus 13 ~vLl~~~~~----~~~w~lPgG~ve~g-Es~~~aa~RE~~EEtGl~~~~~~~--~~~~------~~~~~~~~~~~~~~~~ 79 (126)
T cd04688 13 KLLVQKNPD----ETFYRPPGGGIEFG-ESSEEALIREFKEELGLKIEITRL--LGVV------ENIFTYNGKPGHEIEF 79 (126)
T ss_pred EEEEEEeCC----CCeEECCCccccCC-CCHHHHHHHHHHHHhCCceeccee--eEEE------EEeeccCCcccEEEEE
Confidence 477776533 44799999999997 699999999999999998753332 2211 123333443 455666
Q ss_pred EEEEE
Q 025584 239 FFLFL 243 (250)
Q Consensus 239 lFl~~ 243 (250)
+|.+.
T Consensus 80 ~f~~~ 84 (126)
T cd04688 80 YYLVT 84 (126)
T ss_pred EEEEE
Confidence 77775
No 51
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.19 E-value=1.5e-10 Score=91.85 Aligned_cols=72 Identities=19% Similarity=0.200 Sum_probs=49.1
Q ss_pred EEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCccc-cceEE
Q 025584 160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAVCS-FFLHS 238 (250)
Q Consensus 160 ~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L~~l~~~~~~~~~~pspG~~-dE~i~ 238 (250)
+++|+++. +...|++|||.+|.| |++.+||.||++||||+++.. +..++.+ ...|..++.. .+..+
T Consensus 13 ~vLlv~~~----~~~~~~lPGG~ve~g-Et~~~aa~REl~EEtGl~~~~--~~~l~~~------~~~~~~~~~~~~~~~~ 79 (125)
T cd04689 13 KVLLARVI----GQPHYFLPGGHVEPG-ETAENALRRELQEELGVAVSD--GRFLGAI------ENQWHEKGVRTHEINH 79 (125)
T ss_pred EEEEEEec----CCCCEECCCCcCCCC-CCHHHHHHHHHHHHhCceeec--cEEEEEE------eeeeccCCceEEEEEE
Confidence 48888763 234799999999997 699999999999999999753 3333211 1234444443 34456
Q ss_pred EEEEEc
Q 025584 239 FFLFLS 244 (250)
Q Consensus 239 lFl~~~ 244 (250)
+|.+..
T Consensus 80 ~f~~~~ 85 (125)
T cd04689 80 IFAVES 85 (125)
T ss_pred EEEEEc
Confidence 676653
No 52
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.17 E-value=2.1e-10 Score=92.40 Aligned_cols=78 Identities=23% Similarity=0.221 Sum_probs=55.8
Q ss_pred EEEEEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCce
Q 025584 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCK 225 (250)
Q Consensus 146 aV~VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L~~l~~~~~~~~ 225 (250)
+|.|+++ + ++ ++||+++. ...|++|||++|.| |++++||+||+.||||+.+ ..+..++ .
T Consensus 2 ~v~vi~~-~-~~--~vLl~~~~-----~~~w~lPgG~ve~g-E~~~~aa~REl~EE~G~~~--~~~~~l~---------~ 60 (118)
T cd04665 2 SVLVICF-Y-DD--GLLLVRHK-----DRGWEFPGGHVEPG-ETIEEAARREVWEETGAEL--GSLTLVG---------Y 60 (118)
T ss_pred EEEEEEE-E-CC--EEEEEEeC-----CCEEECCccccCCC-CCHHHHHHHHHHHHHCCcc--CceEEEE---------E
Confidence 5666654 3 34 48888874 23699999999997 6999999999999999997 4666663 3
Q ss_pred eecCCccccceEEEEEEEc
Q 025584 226 FFPSAVCSFFLHSFFLFLS 244 (250)
Q Consensus 226 ~~pspG~~dE~i~lFl~~~ 244 (250)
+..+++.......+|.+..
T Consensus 61 ~~~~~~~~~~~~~~y~a~~ 79 (118)
T cd04665 61 YQVDLFESGFETLVYPAVS 79 (118)
T ss_pred EEecCCCCcEEEEEEEEEE
Confidence 4444444555666677653
No 53
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.17 E-value=1.7e-10 Score=95.90 Aligned_cols=46 Identities=26% Similarity=0.456 Sum_probs=39.3
Q ss_pred EEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCccc
Q 025584 160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLK 207 (250)
Q Consensus 160 ~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~ 207 (250)
++||+|+...|. ...|.+|||++|.| |++++||+||++||||+++.
T Consensus 22 ~iLLvrR~~~p~-~g~WalPGG~ve~G-Et~eeaa~REl~EETgL~~~ 67 (145)
T COG1051 22 RILLVRRANEPG-AGYWALPGGFVEIG-ETLEEAARRELKEETGLRVR 67 (145)
T ss_pred EEEEEEecCCCC-CCcEeCCCccCCCC-CCHHHHHHHHHHHHhCCccc
Confidence 488888766553 44699999999997 69999999999999999974
No 54
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.16 E-value=2.4e-10 Score=90.93 Aligned_cols=55 Identities=31% Similarity=0.510 Sum_probs=41.6
Q ss_pred EEEEEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccc
Q 025584 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKL 208 (250)
Q Consensus 146 aV~VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~ 208 (250)
+|++++ ++.+++ ++|+++. .. ..|++|||.++.| |++++||+||++||||+++..
T Consensus 9 ~~~~~v-~~~~~~--vLL~~r~--~~--~~w~~PgG~v~~g-Et~~~aa~REl~EE~Gi~~~~ 63 (132)
T cd04677 9 GAGVIL-LNEQGE--VLLQKRS--DT--GDWGLPGGAMELG-ESLEETARRELKEETGLEVEE 63 (132)
T ss_pred ceEEEE-EeCCCC--EEEEEec--CC--CcEECCeeecCCC-CCHHHHHHHHHHHHhCCeeee
Confidence 444444 465555 7776543 22 4699999999997 699999999999999999853
No 55
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.16 E-value=9.4e-11 Score=106.14 Aligned_cols=68 Identities=22% Similarity=0.247 Sum_probs=51.5
Q ss_pred EEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCccccceEEE
Q 025584 160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAVCSFFLHSF 239 (250)
Q Consensus 160 ~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L~~l~~~~~~~~~~pspG~~dE~i~l 239 (250)
++||++|.|.+ ...|++|||.+|.| |++++||+||++||||+++. .+..++. ..|+.| +..++.
T Consensus 144 ~iLL~rr~~~~--~g~wslPgG~vE~G-Es~eeAa~REv~EEtGl~v~--~~~~~~s--------~~~~~p---~~lm~~ 207 (256)
T PRK00241 144 EILLARHPRHR--NGVYTVLAGFVEVG-ETLEQCVAREVMEESGIKVK--NLRYVGS--------QPWPFP---HSLMLG 207 (256)
T ss_pred EEEEEEccCCC--CCcEeCcccCCCCC-CCHHHHhhhhhhhccCceee--eeEEEEe--------EeecCC---CeEEEE
Confidence 49999998876 34799999999997 69999999999999999874 5555532 223333 445666
Q ss_pred EEEE
Q 025584 240 FLFL 243 (250)
Q Consensus 240 Fl~~ 243 (250)
|.+.
T Consensus 208 f~a~ 211 (256)
T PRK00241 208 FHAD 211 (256)
T ss_pred EEEE
Confidence 7765
No 56
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.15 E-value=5.3e-11 Score=109.89 Aligned_cols=66 Identities=32% Similarity=0.581 Sum_probs=59.0
Q ss_pred eEEEEcCCEEEEEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCccc
Q 025584 138 GIVFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLK 207 (250)
Q Consensus 138 ~~v~~rg~aV~VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~ 207 (250)
+.+|.|-+-|+|+++++.+++ +++|.||.|++.| +|..+||.+|+| |++++||+||+.||||++++
T Consensus 180 n~~yPr~dPvVIm~li~~d~~-~~LL~R~~r~~~g--l~t~lAGFlEpG-ES~eeav~REtwEEtGi~V~ 245 (345)
T KOG3084|consen 180 NVIYPRTDPVVIMLLIDHDGK-HALLGRQKRYPPG--LWTCLAGFLEPG-ESIEEAVRRETWEETGIEVE 245 (345)
T ss_pred CeeccCCCCeEEEEEEcCCCC-EeeeecccCCCCc--hhhhhhccCCcc-ccHHHHHHHHHHHHhCceee
Confidence 667788888888888888886 8999999999877 899999999998 69999999999999999985
No 57
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.15 E-value=3.4e-10 Score=90.13 Aligned_cols=57 Identities=33% Similarity=0.555 Sum_probs=44.3
Q ss_pred EEEEEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCccc
Q 025584 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLK 207 (250)
Q Consensus 146 aV~VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~ 207 (250)
+|.+++ ++.+++ ++|+++.. +..+..|.+|||+++.| |++++||.||++||||+++.
T Consensus 4 ~v~~ii-~~~~~~--iLl~~r~~-~~~~~~w~~PGG~ve~g-Et~~~Aa~REl~EE~Gl~~~ 60 (129)
T cd04678 4 GVGVFV-LNPKGK--VLLGKRKG-SHGAGTWALPGGHLEFG-ESFEECAAREVLEETGLHIE 60 (129)
T ss_pred EEEEEE-ECCCCe--EEEEeccC-CCCCCeEECCcccccCC-CCHHHHHHHHHHHHhCCccc
Confidence 455554 466554 77777654 23456899999999997 69999999999999999975
No 58
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.13 E-value=4e-10 Score=88.24 Aligned_cols=55 Identities=33% Similarity=0.545 Sum_probs=42.7
Q ss_pred EEEEEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccc
Q 025584 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKL 208 (250)
Q Consensus 146 aV~VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~ 208 (250)
+|++++ .+.+++ ++|+++... ..|++|+|+++.| |++++||+||++||||+++..
T Consensus 4 ~v~~ii-~~~~~~--vLl~~r~~~----~~w~lPgG~v~~~-E~~~~aa~REl~EE~Gl~~~~ 58 (129)
T cd04676 4 GVTAVV-RDDEGR--VLLIRRSDN----GLWALPGGAVEPG-ESPADTAVREVREETGLDVEV 58 (129)
T ss_pred eEEEEE-ECCCCe--EEEEEecCC----CcEECCeeccCCC-CCHHHHHHHHHHHHhCceeEe
Confidence 455554 465554 778776432 5799999999997 699999999999999998753
No 59
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.13 E-value=3.3e-10 Score=97.03 Aligned_cols=82 Identities=20% Similarity=0.276 Sum_probs=52.4
Q ss_pred CEEEEEEEEcCCCceEEEEEEeeecCCCC---c-EEEecceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccC
Q 025584 145 PAVAVLILLDSEGETYAILTEQVRVPTGR---V-ILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYP 220 (250)
Q Consensus 145 ~aV~VL~il~~~~~~~VlLvrQ~R~p~~~---~-~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L~~l~~~ 220 (250)
.++++++ ++++++ ++|.+ |.+... . +|.+|||++++| |++++||+|||+||||+.+. .+..+
T Consensus 38 ~~~~v~v-~~~~g~--iLL~~--R~~~~~~~pg~~~~~pGG~ve~G-Es~~eAA~REL~EEtGl~~~--~~~~~------ 103 (180)
T PRK15393 38 RATYIVV-HDGMGK--ILVQR--RTETKDFLPGMLDATAGGVVQAG-EQLLESARREAEEELGIAGV--PFAEH------ 103 (180)
T ss_pred EEEEEEE-ECCCCe--EEEEE--eCCCCCCCCCcccccCCCcCCCC-CCHHHHHHHHHHHHHCCCCc--cceec------
Confidence 3455544 576664 66644 443322 2 346899999998 69999999999999999853 33333
Q ss_pred CCCceeecCCccccceEEEEEEE
Q 025584 221 STGCKFFPSAVCSFFLHSFFLFL 243 (250)
Q Consensus 221 ~~~~~~~pspG~~dE~i~lFl~~ 243 (250)
+.++.+.+......++|.+.
T Consensus 104 ---~~~~~~~~~~~~~~~~f~~~ 123 (180)
T PRK15393 104 ---GQFYFEDENCRVWGALFSCV 123 (180)
T ss_pred ---eeEEecCCCceEEEEEEEEE
Confidence 23455555555455566553
No 60
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.12 E-value=3.3e-10 Score=91.52 Aligned_cols=52 Identities=29% Similarity=0.408 Sum_probs=41.3
Q ss_pred EEEEEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcc
Q 025584 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQL 206 (250)
Q Consensus 146 aV~VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i 206 (250)
+|.++++ + ++ ++||+++.|.+ .|++|||.+|.| |++.+||+||++||||+++
T Consensus 2 ~~~~ii~-~-~~--~vLLv~~~~~~----~w~lPgG~ve~g-Et~~~aa~REl~EEtGl~~ 53 (131)
T cd04686 2 AVRAIIL-Q-GD--KILLLYTKRYG----DYKFPGGGVEKG-EDHIEGLIRELQEETGATN 53 (131)
T ss_pred cEEEEEE-E-CC--EEEEEEEcCCC----cEECccccCCCC-CCHHHHHHHHHHHHHCCcc
Confidence 3445443 3 34 48999887632 599999999997 6999999999999999986
No 61
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.12 E-value=5.6e-10 Score=85.35 Aligned_cols=55 Identities=33% Similarity=0.570 Sum_probs=43.2
Q ss_pred EEEEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCccc
Q 025584 147 VAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLK 207 (250)
Q Consensus 147 V~VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~ 207 (250)
+++++ .+.+++ ++|+++.+. ....|++|+|+++.+ |++.++|+||++||+|+.+.
T Consensus 3 ~~~i~-~~~~~~--ill~kr~~~--~~~~~~~p~G~~~~~-e~~~~~a~RE~~EE~Gl~~~ 57 (123)
T cd02883 3 VGAVI-LDEDGR--VLLVRRADS--PGGLWELPGGGVEPG-ETLEEAAIREVREETGLDVD 57 (123)
T ss_pred eEEEE-ECCCCC--EEEEEEcCC--CCCeEeCCcccccCC-CCHHHHHHHHHHHhhCccce
Confidence 44443 365554 778777665 455899999999997 69999999999999999874
No 62
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.11 E-value=6.7e-10 Score=86.01 Aligned_cols=56 Identities=23% Similarity=0.410 Sum_probs=44.5
Q ss_pred EEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCccc
Q 025584 149 VLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLK 207 (250)
Q Consensus 149 VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~ 207 (250)
++++.+.+++ ++|+++.+.+.....|++|+|.++.+ |+++++|.||+.||||+++.
T Consensus 5 ~~~i~~~~~~--~Ll~~r~~~~~~~g~w~~p~G~~~~~-e~~~~~a~Re~~EE~g~~~~ 60 (124)
T cd03425 5 AAIIIDDDGR--ILIAQRPAGKHLGGLWEFPGGKVEPG-ETPEQALVRELREELGIEVE 60 (124)
T ss_pred EEEEECCCCE--EEEEEeCCCCCCCCeEeCCCcccCCC-CCHHHHHHHHHHHhhCcEEe
Confidence 3333465454 88888766665567999999999986 69999999999999999875
No 63
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.10 E-value=7.8e-10 Score=89.35 Aligned_cols=52 Identities=27% Similarity=0.437 Sum_probs=40.6
Q ss_pred EEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccceeec
Q 025584 161 AILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDL 214 (250)
Q Consensus 161 VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L 214 (250)
++|++|.+.+ +...|++|+|.+|.| |++++||.||+.||||+++....+..+
T Consensus 17 ~lL~~r~~~~-~~~~w~lPgG~ve~~-E~~~~aa~REl~EE~g~~~~~~~l~~~ 68 (118)
T cd04674 17 LLVIRRGIEP-GRGKLALPGGFIELG-ETWQDAVARELLEETGVAVDPADIRLF 68 (118)
T ss_pred EEEEEeecCC-CCCeEECCceecCCC-CCHHHHHHHHHHHHHCCcccccEEEEE
Confidence 5666665443 456899999999997 699999999999999999864444433
No 64
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.10 E-value=2e-10 Score=97.09 Aligned_cols=57 Identities=19% Similarity=0.310 Sum_probs=42.9
Q ss_pred EEEEEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCccc
Q 025584 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLK 207 (250)
Q Consensus 146 aV~VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~ 207 (250)
+|.+++ .+.+++ +||+++. .......|++|||+++.| |++++||+||++||||+++.
T Consensus 19 ~v~~vI-~~~~g~--VLL~kR~-~~~~~g~W~lPGG~VE~G-Et~~~Aa~REl~EEtGl~v~ 75 (159)
T PRK15434 19 SLDFIV-ENSRGE--FLLGKRT-NRPAQGYWFVPGGRVQKD-ETLEAAFERLTMAELGLRLP 75 (159)
T ss_pred EEEEEE-ECCCCE--EEEEEcc-CCCCCCcEECCceecCCC-CCHHHHHHHHHHHHHCCccc
Confidence 444443 354454 7777654 233456899999999998 69999999999999999864
No 65
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.10 E-value=9.2e-10 Score=86.91 Aligned_cols=54 Identities=31% Similarity=0.420 Sum_probs=43.7
Q ss_pred EEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCccc
Q 025584 151 ILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLK 207 (250)
Q Consensus 151 ~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~ 207 (250)
++.+.+++ ++|.++.+.+..+..|++|+|.++.| |++++||.||+.||||+++.
T Consensus 10 ii~~~~~~--vLl~~R~~~~~~~g~w~~Pgg~ve~g-e~~~~~~~RE~~EE~g~~~~ 63 (128)
T TIGR00586 10 IIRNENGE--IIITRRADGHMFAKLLEFPGGKEEGG-ETPEQAVVRELEEEIGIPQH 63 (128)
T ss_pred EEECCCCE--EEEEEEeCCCCCCCeEECCCcccCCC-CCHHHHHHHHHHHHHCCcce
Confidence 33455554 77777766666667999999999987 69999999999999999874
No 66
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.09 E-value=5.4e-10 Score=93.90 Aligned_cols=61 Identities=21% Similarity=0.211 Sum_probs=43.6
Q ss_pred EEEEEEEEcCCCceEEEEEEeeecC-CCCcEEEec-ceecCCCCCCHHHHHHHHHHHHhCCcccccc
Q 025584 146 AVAVLILLDSEGETYAILTEQVRVP-TGRVILELP-AGMLDDDKGDFVGTAVREVEEETGIQLKLED 210 (250)
Q Consensus 146 aV~VL~il~~~~~~~VlLvrQ~R~p-~~~~~~ElP-AG~vD~geEt~~~AA~REL~EETGl~i~~~~ 210 (250)
+|+|++ ++++++ ++|.++.... .....|++| ||++|+| |++++||+||++||||+++....
T Consensus 32 ~v~v~i-~~~~~~--iLl~kR~~~~~~~Pg~w~~~~gG~ie~G-Et~~eaa~REl~EEtGl~~~~~~ 94 (165)
T cd02885 32 AFSVFL-FNSKGR--LLLQRRALSKYTFPGLWTNTCCSHPLPG-EGVKDAAQRRLREELGITGDLLE 94 (165)
T ss_pred EEEEEE-EcCCCc--EEEEeccCCCccCCCcccccccCCCCCC-CCHHHHHHHHHHHHhCCCccchh
Confidence 455544 466664 7776653221 123478886 8999997 69999999999999999986433
No 67
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.08 E-value=8.9e-10 Score=88.23 Aligned_cols=52 Identities=19% Similarity=0.371 Sum_probs=41.5
Q ss_pred cCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccc
Q 025584 154 DSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKL 208 (250)
Q Consensus 154 ~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~ 208 (250)
..+++ +||+++.+.......|++|+|.++.| |++++||.||+.||||+++..
T Consensus 12 ~~~~~--vLL~~R~~~~~~~g~w~~PgG~ve~g-E~~~~a~~RE~~EE~Gl~~~~ 63 (135)
T PRK10546 12 ERDGK--ILLAQRPAHSDQAGLWEFAGGKVEPG-ESQPQALIRELREELGIEATV 63 (135)
T ss_pred ecCCE--EEEEEccCCCCCCCcEECCcccCCCC-CCHHHHHHHHHHHHHCCcccc
Confidence 44443 77777655444456899999999997 699999999999999999753
No 68
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.07 E-value=1.6e-09 Score=85.16 Aligned_cols=57 Identities=25% Similarity=0.349 Sum_probs=43.7
Q ss_pred EEEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCccc
Q 025584 148 AVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLK 207 (250)
Q Consensus 148 ~VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~ 207 (250)
+++++.+.+++ ++|.++...+.....|++|+|.+++| |++.+||.||++||||+++.
T Consensus 7 ~~~ii~~~~~~--vll~rR~~~~~~~g~w~~PgG~~~~g-E~~~~a~~Re~~EE~gl~~~ 63 (129)
T PRK10776 7 AVGIIRNPNNE--IFITRRAADAHMAGKWEFPGGKIEAG-ETPEQALIRELQEEVGITVQ 63 (129)
T ss_pred EEEEEECCCCE--EEEEEecCCCCCCCeEECCceecCCC-CCHHHHHHHHHHHHHCCcee
Confidence 33344565554 77777655444456899999999997 69999999999999999864
No 69
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.05 E-value=1e-09 Score=85.80 Aligned_cols=47 Identities=30% Similarity=0.419 Sum_probs=38.6
Q ss_pred EEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccceeec
Q 025584 160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDL 214 (250)
Q Consensus 160 ~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L 214 (250)
+++|+++.+ ..|++|||.+++| |++++||.||++||||+++. .+..+
T Consensus 12 ~vLlv~r~~-----~~w~~PgG~ve~g-E~~~~aa~REl~EEtGl~~~--~~~~~ 58 (112)
T cd04667 12 RVLLVRKSG-----SRWALPGGKIEPG-ETPLQAARRELQEETGLQGL--DLLYL 58 (112)
T ss_pred EEEEEEcCC-----CcEeCCCCcCCCC-CCHHHHHHHHHHHHhCCccc--ceEEE
Confidence 488887642 4799999999997 69999999999999999864 44444
No 70
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.02 E-value=3.5e-09 Score=86.55 Aligned_cols=57 Identities=28% Similarity=0.343 Sum_probs=44.2
Q ss_pred EEEEEEEEcCCCceEEEEEEeeecC-CCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcc
Q 025584 146 AVAVLILLDSEGETYAILTEQVRVP-TGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQL 206 (250)
Q Consensus 146 aV~VL~il~~~~~~~VlLvrQ~R~p-~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i 206 (250)
++.+++ ++.+++ ++|+++.+.. .....|++|+|.++.| |++.+||.||+.||||+.+
T Consensus 2 ~~~~~i-~~~~g~--vLl~r~~~~~~~~~~~w~~PgG~ve~g-E~~~~a~~Re~~EE~G~~~ 59 (133)
T cd04685 2 AARVVL-LDPDDR--VLLLRGDDPDSPGPDWWFTPGGGVEPG-ESPEQAARRELREETGITV 59 (133)
T ss_pred eEEEEE-EcCCCe--EEEEEEeCCCCCCCCEEECCcCCCCCC-CCHHHHHHHHHHHHHCCcc
Confidence 455555 466665 8888755431 2445899999999997 6999999999999999987
No 71
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.00 E-value=2.2e-09 Score=91.25 Aligned_cols=91 Identities=18% Similarity=0.107 Sum_probs=57.1
Q ss_pred EEEEEEE-EcCCCceEEEEEEeee-cCCCCcEE-EecceecCCCCCCHHHHHHHHHHHHhCCcccccc-eeeccccccCC
Q 025584 146 AVAVLIL-LDSEGETYAILTEQVR-VPTGRVIL-ELPAGMLDDDKGDFVGTAVREVEEETGIQLKLED-MIDLTAFLYPS 221 (250)
Q Consensus 146 aV~VL~i-l~~~~~~~VlLvrQ~R-~p~~~~~~-ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~-L~~L~~l~~~~ 221 (250)
+|.|+++ .+.+++.++++.++-- ......+| ++|||++++| |++.+||+||++||||+++...+ +..++.+
T Consensus 34 ~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~g-E~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~---- 108 (180)
T cd03676 34 GVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHG-EGPEETLVKECDEEAGLPEDLVRQLKPVGVV---- 108 (180)
T ss_pred EEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCC-CCHHHHHHHHHHHHhCCCHHHHhhceeccEE----
Confidence 5555433 3444122354444321 11234578 6999999997 69999999999999999875322 4344321
Q ss_pred CCceee--cCCccccceEEEEEEE
Q 025584 222 TGCKFF--PSAVCSFFLHSFFLFL 243 (250)
Q Consensus 222 ~~~~~~--pspG~~dE~i~lFl~~ 243 (250)
...+ ...+..++.+++|.+.
T Consensus 109 --~~~~~~~~~~~~~e~~~~f~~~ 130 (180)
T cd03676 109 --SYLREGEAGGLQPEVEYVYDLE 130 (180)
T ss_pred --EEEEEcCCCcEeeeEEEEEEEE
Confidence 1233 3556788999988775
No 72
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.99 E-value=1.3e-09 Score=90.38 Aligned_cols=59 Identities=27% Similarity=0.397 Sum_probs=46.2
Q ss_pred EEEEEEEEcCCCceEEEEEEeeecC-CCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccc
Q 025584 146 AVAVLILLDSEGETYAILTEQVRVP-TGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKL 208 (250)
Q Consensus 146 aV~VL~il~~~~~~~VlLvrQ~R~p-~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~ 208 (250)
+|+|++ ++.+++ +||+++.+.+ ..+..|++|||+++++ |++++||+||++||||+.+..
T Consensus 3 ~v~viv-~~~~~~--vLl~rr~~~~~~~~g~w~~PgG~v~~~-E~~~~aa~RE~~EE~gi~~~~ 62 (143)
T cd04694 3 GVAVLL-QSSDQK--LLLTRRASSLRIFPNVWVPPGGHVELG-ENLLEAGLRELNEETGLTLDP 62 (143)
T ss_pred EEEEEE-EcCCCE--EEEEEECCCCCCCCCeEECcccccCCC-CCHHHHHHHHHHHHHCCCccc
Confidence 344443 466654 8999887654 3456899999999997 699999999999999998753
No 73
>PLN02709 nudix hydrolase
Probab=98.99 E-value=1.5e-09 Score=96.65 Aligned_cols=65 Identities=29% Similarity=0.409 Sum_probs=48.8
Q ss_pred cCCEEEEEEEEcC---CCceEEEEEEeeecC-CCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCccc
Q 025584 143 RGPAVAVLILLDS---EGETYAILTEQVRVP-TGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLK 207 (250)
Q Consensus 143 rg~aV~VL~il~~---~~~~~VlLvrQ~R~p-~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~ 207 (250)
+..||.|+++... +++.+++|+++.+.. ...+.|.||||++|++|+++.+||+||++||+|+...
T Consensus 32 r~AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~ 100 (222)
T PLN02709 32 KSSAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPS 100 (222)
T ss_pred CccEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCch
Confidence 3456666544221 245679999886643 2456899999999998778999999999999999864
No 74
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=98.98 E-value=2.8e-09 Score=99.90 Aligned_cols=60 Identities=30% Similarity=0.529 Sum_probs=45.3
Q ss_pred EEEEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccc
Q 025584 147 VAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLED 210 (250)
Q Consensus 147 V~VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~ 210 (250)
|++-+++..++ ++||+++...| +...|.+|||.+|.| |++++||+||++||||+++....
T Consensus 204 vtv~avv~~~g--~VLLvrR~~~p-~~g~W~lPGG~ve~g-Et~~~Aa~REl~EETGl~v~~~~ 263 (340)
T PRK05379 204 VTVDAVVVQSG--HVLLVRRRAEP-GKGLWALPGGFLEQD-ETLLDACLRELREETGLKLPEPV 263 (340)
T ss_pred eEEEEEEEECC--EEEEEEecCCC-CCCeEECCcccCCCC-CCHHHHHHHHHHHHHCCcccccc
Confidence 44433334455 48888775533 466899999999997 69999999999999999875443
No 75
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=98.96 E-value=3.3e-09 Score=90.88 Aligned_cols=58 Identities=17% Similarity=0.319 Sum_probs=41.2
Q ss_pred EEEEEEEEcCCCceEEEEEEeeecC-CCCcEEEec-ceecCCCCCCHHHHHHHHHHHHhCCccc
Q 025584 146 AVAVLILLDSEGETYAILTEQVRVP-TGRVILELP-AGMLDDDKGDFVGTAVREVEEETGIQLK 207 (250)
Q Consensus 146 aV~VL~il~~~~~~~VlLvrQ~R~p-~~~~~~ElP-AG~vD~geEt~~~AA~REL~EETGl~i~ 207 (250)
+|+|++ ++.+++ ++|+++.... .....|++| ||++++| |++++||+||+.||||+++.
T Consensus 36 av~v~i-~~~~g~--vLL~rR~~~~~~~PG~w~~~~gG~ve~G-Et~~~aa~REl~EEtGl~~~ 95 (184)
T PRK03759 36 AFSCYL-FDADGR--LLVTRRALSKKTWPGVWTNSCCGHPQPG-ESLEDAVIRRCREELGVEIT 95 (184)
T ss_pred EEEEEE-EcCCCe--EEEEEccCCCCCCCCcccccccCCCCCC-CCHHHHHHHHHHHHhCCCcc
Confidence 555554 466664 8887652211 112357765 7999997 69999999999999999874
No 76
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=98.84 E-value=1.8e-08 Score=84.41 Aligned_cols=63 Identities=21% Similarity=0.227 Sum_probs=42.6
Q ss_pred EEEEEEEEcCCCceEEEEEEeeec-CCCCcEEEec-ceecCCCCCCHHHHHHHHHHHHhCCcccccceeec
Q 025584 146 AVAVLILLDSEGETYAILTEQVRV-PTGRVILELP-AGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDL 214 (250)
Q Consensus 146 aV~VL~il~~~~~~~VlLvrQ~R~-p~~~~~~ElP-AG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L 214 (250)
+|++++ ++.+++ ++|.++... ......|++| ||+++.| | .+||+||++||||+++...++..+
T Consensus 29 ~v~v~v-~~~~g~--vLl~kR~~~k~~~PG~W~~~~gG~v~~G-E--~eaa~REl~EE~Gl~~~~~~l~~~ 93 (158)
T TIGR02150 29 AFSVFL-FNEEGQ--LLLQRRALSKITWPGVWTNSCCSHPLPG-E--LEAAIRRLREELGIPADDVPLTVL 93 (158)
T ss_pred EEEEEE-EcCCCe--EEEEeccCCCcCCCCCccccccCCCCcc-c--HHHHHHHHHHHHCCCccccceEEc
Confidence 555554 476665 777654221 1234589997 7999997 4 399999999999999864443333
No 77
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=98.83 E-value=2.7e-08 Score=81.39 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=29.0
Q ss_pred EEEecceecCCCCCCHHHHHHHHHHHHhCCcc
Q 025584 175 ILELPAGMLDDDKGDFVGTAVREVEEETGIQL 206 (250)
Q Consensus 175 ~~ElPAG~vD~geEt~~~AA~REL~EETGl~i 206 (250)
.|++|||.+++| |++.+||+||++||||+++
T Consensus 25 ~~~lPgG~ve~~-E~~~~aa~Rel~EEtGl~~ 55 (126)
T cd04663 25 GFQIVKGTVEPG-ETPEAAALRELQEESGLPS 55 (126)
T ss_pred cEECCCccCCCC-CCHHHHHHHHHHHHHCCee
Confidence 389999999997 6999999999999999986
No 78
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=98.82 E-value=6.5e-09 Score=84.29 Aligned_cols=45 Identities=27% Similarity=0.304 Sum_probs=36.5
Q ss_pred EEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCccc
Q 025584 160 YAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLK 207 (250)
Q Consensus 160 ~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~ 207 (250)
.+||+++.. + ....|+||+|++|.| |++.+||.||+.||||+.+.
T Consensus 14 ~~Llvk~~~-~-~~g~W~fPgG~ve~g-Et~~eaa~REl~EEtGl~v~ 58 (132)
T cd04661 14 LVLLVQQKV-G-SQNHWILPQGKREEG-ETLRQTAERTLKELCGNNLK 58 (132)
T ss_pred EEEEEEeec-C-CCCeeECCcccccCC-CCHHHHHHHHHHHhhCCCce
Confidence 466666532 2 245899999999997 69999999999999999864
No 79
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=98.80 E-value=2.7e-08 Score=76.95 Aligned_cols=43 Identities=37% Similarity=0.601 Sum_probs=33.5
Q ss_pred EEEEEeeecCCCCcEEEecceecCCCCCCHHH-HHHHHHHHHhCCccc
Q 025584 161 AILTEQVRVPTGRVILELPAGMLDDDKGDFVG-TAVREVEEETGIQLK 207 (250)
Q Consensus 161 VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~-AA~REL~EETGl~i~ 207 (250)
+++. +.+.+. ..|++|||.+|.+| +... ||+||+.||||+++.
T Consensus 26 vl~~-~~~~~~--~~~~~PgG~ve~~e-~~~~~aa~RE~~EEtGl~~~ 69 (161)
T COG0494 26 VLLA-QRRDDG--GLWELPGGKVEPGE-ELPEEAAARELEEETGLRVK 69 (161)
T ss_pred EeEE-EccccC--CceecCCcccCCCC-chHHHHHHHHHHHHhCCeee
Confidence 4444 434333 57999999999975 5588 999999999999985
No 80
>PRK08999 hypothetical protein; Provisional
Probab=98.75 E-value=5.8e-08 Score=88.92 Aligned_cols=54 Identities=22% Similarity=0.430 Sum_probs=43.6
Q ss_pred EEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCccc
Q 025584 151 ILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLK 207 (250)
Q Consensus 151 ~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~ 207 (250)
++.+.+++ ++|+++.+.......|++|+|.++.| |++.+||.||++||||+.+.
T Consensus 11 vi~~~~~~--vLL~kR~~~~~~~g~w~~PgG~ve~g-E~~~~aa~RE~~EE~Gl~~~ 64 (312)
T PRK08999 11 VIRDADGR--ILLARRPEGKHQGGLWEFPGGKVEPG-ETVEQALARELQEELGIEVT 64 (312)
T ss_pred EEECCCCe--EEEEEecCCCCCCCeEECCccCCCCC-CCHHHHHHHHHHHHhCCcee
Confidence 33455554 88887766555567999999999997 69999999999999999874
No 81
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=98.70 E-value=2e-08 Score=92.54 Aligned_cols=91 Identities=24% Similarity=0.290 Sum_probs=74.1
Q ss_pred EcCCEEEEEEEEcCCCceEEEEEEeeecCC-------------------------CCcEEEecceecCCCCCCHHHHHHH
Q 025584 142 ARGPAVAVLILLDSEGETYAILTEQVRVPT-------------------------GRVILELPAGMLDDDKGDFVGTAVR 196 (250)
Q Consensus 142 ~rg~aV~VL~il~~~~~~~VlLvrQ~R~p~-------------------------~~~~~ElPAG~vD~geEt~~~AA~R 196 (250)
..-++|.|+++ +.+.+ +.+|+||||.++ -++.+|++||.||.+ -++.+.|..
T Consensus 24 q~~~~v~ill~-~r~~e-q~l~vrqfr~ai~~~~~s~~~~~~~~~~~d~~~~~~e~g~tielc~g~idke-~s~~eia~e 100 (405)
T KOG4432|consen 24 QKMSSVSILLF-HRDLE-QFLLVRQFRPAIFTASNSPENHGKEFDKIDWSSYDSETGYTIELCAGLIDKE-LSPREIASE 100 (405)
T ss_pred hhccceEEEEE-ccchh-hhehhhhhchhheecccCCCCCCcccccccHhhCCCccceeeeeeccccccc-cCHHHHhHH
Confidence 34467888764 66654 699999999875 235789999999985 699999999
Q ss_pred HHHHHhCCcccccceeeccccccCCCCceeecCCccccceEEEEEEEc
Q 025584 197 EVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAVCSFFLHSFFLFLS 244 (250)
Q Consensus 197 EL~EETGl~i~~~~L~~L~~l~~~~~~~~~~pspG~~dE~i~lFl~~~ 244 (250)
|+.||+||++++++|+.+ ..+-...|.+...+|+|.|+-
T Consensus 101 ev~eecgy~v~~d~l~hv---------~~~~~g~~~s~sa~~l~y~ei 139 (405)
T KOG4432|consen 101 EVAEECGYRVDPDDLIHV---------ITFVVGAHQSGSAQHLYYAEI 139 (405)
T ss_pred HHHHHhCCcCChhHceEE---------EEEEeccccCccchheeeeec
Confidence 999999999999999887 356667777888889998863
No 82
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=98.58 E-value=6.8e-08 Score=88.46 Aligned_cols=76 Identities=22% Similarity=0.320 Sum_probs=57.7
Q ss_pred EEEcCCEEEEEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccceeecccccc
Q 025584 140 VFARGPAVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLY 219 (250)
Q Consensus 140 v~~rg~aV~VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L~~l~~ 219 (250)
.|.|-+-++|+++.+. ++ ++|.++.|.. ..++.+-||.||+| ||+++|.+||+.||+|++++ ++.+++
T Consensus 139 ~fPR~dP~vIv~v~~~-~~--ilLa~~~~h~--~g~yS~LAGFVE~G-ETlE~AV~REv~EE~Gi~V~--~vrY~~---- 206 (279)
T COG2816 139 HFPRIDPCVIVAVIRG-DE--ILLARHPRHF--PGMYSLLAGFVEPG-ETLEQAVAREVFEEVGIKVK--NVRYVG---- 206 (279)
T ss_pred cCCCCCCeEEEEEecC-Cc--eeecCCCCCC--CcceeeeeecccCC-ccHHHHHHHHHHHhhCeEEe--eeeEEe----
Confidence 4555565666555443 33 8888888877 44789999999998 69999999999999999985 777775
Q ss_pred CCCCceeecCCc
Q 025584 220 PSTGCKFFPSAV 231 (250)
Q Consensus 220 ~~~~~~~~pspG 231 (250)
-+.||-|.
T Consensus 207 ----SQPWPfP~ 214 (279)
T COG2816 207 ----SQPWPFPH 214 (279)
T ss_pred ----ccCCCCch
Confidence 35666664
No 83
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=98.47 E-value=4.2e-07 Score=83.91 Aligned_cols=100 Identities=23% Similarity=0.180 Sum_probs=80.6
Q ss_pred CCceeeeEEEEcCCEEEEEEEEcCCCceEEEEEEeeecCC---------------------------CCcEEEecceecC
Q 025584 132 TGQKVPGIVFARGPAVAVLILLDSEGETYAILTEQVRVPT---------------------------GRVILELPAGMLD 184 (250)
Q Consensus 132 ~G~~~p~~v~~rg~aV~VL~il~~~~~~~VlLvrQ~R~p~---------------------------~~~~~ElPAG~vD 184 (250)
||-...+.....+++|+++++ |..++ .+||++|+|+++ -+..+|++||.+|
T Consensus 217 NGi~knWDl~k~hdSvt~iL~-n~srk-~LVlvqqfRpaVy~G~~~~~~~g~~~~vDe~~~~e~~PaigvTlELcag~Vd 294 (405)
T KOG4432|consen 217 NGITKNWDLAKCHDSVTCILV-NMSRK-ELVLVQQFRPAVYVGKNRFLKEGIGKPVDEIDFSESDPAIGVTLELCAGRVD 294 (405)
T ss_pred cCcccccchhhCCCceEEEEE-eccch-heehhhhcCcceeecceeecccCCCCcccccccccCCccceeeeeeecccCC
Confidence 677777777788899999875 54333 599999999887 1236899999999
Q ss_pred CCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCCCceeecCCccccceEEEEEEE
Q 025584 185 DDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPSTGCKFFPSAVCSFFLHSFFLFL 243 (250)
Q Consensus 185 ~geEt~~~AA~REL~EETGl~i~~~~L~~L~~l~~~~~~~~~~pspG~~dE~i~lFl~~ 243 (250)
.. -+..+.|+||..||+||++..+++..+ ..+++..|.+...-.+|.++
T Consensus 295 ~p-~s~~e~a~~e~veecGYdlp~~~~k~v---------a~y~sGVG~SG~~QTmfy~e 343 (405)
T KOG4432|consen 295 DP-FSDPEKAARESVEECGYDLPEDSFKLV---------AKYISGVGQSGDTQTMFYVE 343 (405)
T ss_pred CC-cccHHHHHHHHHHHhCCCCCHHHHhhh---------heeecccCCcCCeeEEEEEE
Confidence 85 478899999999999999987777666 46788888888888888775
No 84
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=98.41 E-value=1.1e-06 Score=78.74 Aligned_cols=63 Identities=29% Similarity=0.356 Sum_probs=48.2
Q ss_pred CEEEEEEEEcCCCceEEEEEEeeecCC-CCcEEEecceecCCCCCCHHHHHHHHHHHHhCCccc
Q 025584 145 PAVAVLILLDSEGETYAILTEQVRVPT-GRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLK 207 (250)
Q Consensus 145 ~aV~VL~il~~~~~~~VlLvrQ~R~p~-~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~ 207 (250)
.+|.|.++-..+++..|||+++.|.-- +++-..||||+.|+.+++.+.+|.||.+||.|++..
T Consensus 44 ~aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~ 107 (246)
T KOG3069|consen 44 AAVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPE 107 (246)
T ss_pred ccEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHH
Confidence 355555432325667788998876543 345788999999998889999999999999999863
No 85
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=98.35 E-value=9e-07 Score=76.99 Aligned_cols=46 Identities=22% Similarity=0.194 Sum_probs=35.8
Q ss_pred CCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCcc
Q 025584 156 EGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQL 206 (250)
Q Consensus 156 ~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i 206 (250)
++...++++++.. ...|.+|||++|++ |++.+||+|||.||||+.+
T Consensus 46 ~~~l~vLl~~r~~----~g~walPGG~v~~~-E~~~~aa~Rel~EEt~l~l 91 (186)
T cd03670 46 KPILQFVAIKRPD----SGEWAIPGGMVDPG-EKISATLKREFGEEALNSL 91 (186)
T ss_pred CCeeEEEEEEeCC----CCcCcCCeeeccCC-CCHHHHHHHHHHHHHcccc
Confidence 3344566666522 34799999999997 6999999999999997754
No 86
>PLN02791 Nudix hydrolase homolog
Probab=98.34 E-value=2e-06 Score=88.46 Aligned_cols=89 Identities=24% Similarity=0.242 Sum_probs=55.6
Q ss_pred EEEEEEEEcC-CCceEEEEEEeeec-CCCCcEEEe-cceecCCCCCCHHHHHHHHHHHHhCCcccccceeeccccccCCC
Q 025584 146 AVAVLILLDS-EGETYAILTEQVRV-PTGRVILEL-PAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLTAFLYPST 222 (250)
Q Consensus 146 aV~VL~il~~-~~~~~VlLvrQ~R~-p~~~~~~El-PAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L~~l~~~~~ 222 (250)
+|.|.+ ++. +++ ++|.++-.. ......|++ |||+++.| |+..+||+|||+||+|+.+..+++..+..+..
T Consensus 34 AvhVwI-fn~~~ge--lLLQkRS~~K~~~PG~WDiS~gGHv~aG-Es~~eAA~REL~EELGI~l~~~~l~~l~~~~~--- 106 (770)
T PLN02791 34 AVHVWI-YSESTQE--LLLQRRADCKDSWPGQWDISSAGHISAG-DTSLLSAQRELEEELGIILPKDAFELLFVFLQ--- 106 (770)
T ss_pred EEEEEE-EECCCCe--EEEEEecCCCCCCCCcccCcCCCCCCCC-CCHHHHHHHHHHHHhCCCCChhheeeeeeEEE---
Confidence 555554 464 344 555544221 123457888 79999997 69999999999999999876555555532100
Q ss_pred CceeecC-Cc-cccceEEEEEEE
Q 025584 223 GCKFFPS-AV-CSFFLHSFFLFL 243 (250)
Q Consensus 223 ~~~~~ps-pG-~~dE~i~lFl~~ 243 (250)
..... .+ ..+|..++|++.
T Consensus 107 --~~~~~~g~~~e~E~~~VYlv~ 127 (770)
T PLN02791 107 --ECVINDGKFINNEYNDVYLVT 127 (770)
T ss_pred --EeeccCCCcceeeEEEEEEEE
Confidence 11111 12 345888888875
No 87
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=97.96 E-value=5.8e-05 Score=68.41 Aligned_cols=92 Identities=20% Similarity=0.238 Sum_probs=49.3
Q ss_pred EEEEEEEEcCCCceEEEEEEeeecCC---CCcEEEecc-eecCCCC-------------CC---HHHHHHHHHHHHhCCc
Q 025584 146 AVAVLILLDSEGETYAILTEQVRVPT---GRVILELPA-GMLDDDK-------------GD---FVGTAVREVEEETGIQ 205 (250)
Q Consensus 146 aV~VL~il~~~~~~~VlLvrQ~R~p~---~~~~~ElPA-G~vD~ge-------------Et---~~~AA~REL~EETGl~ 205 (250)
++.|++ ++.+++ ++|.+ |.+. ....|+..+ |++..|+ |+ ..+||+|||+|||||+
T Consensus 58 a~~v~i-~n~~g~--lLLQk--Rs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~ 132 (247)
T PLN02552 58 AFSVFL-FNSKYE--LLLQQ--RAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIP 132 (247)
T ss_pred EEEEEE-EcCCCe--EEEEE--ecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCC
Confidence 566664 477775 55544 4333 234786663 5554431 11 6789999999999998
Q ss_pred ccc---cceeeccccccCC-CCceeecCCccc-cceEEEEEE
Q 025584 206 LKL---EDMIDLTAFLYPS-TGCKFFPSAVCS-FFLHSFFLF 242 (250)
Q Consensus 206 i~~---~~L~~L~~l~~~~-~~~~~~pspG~~-dE~i~lFl~ 242 (250)
+.. +++..++.+.+.. .....||..+.. +|..++|+.
T Consensus 133 ~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~ 174 (247)
T PLN02552 133 AEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFI 174 (247)
T ss_pred ccccccccceeeeEEEEecccccccccCCCccceEEEEEEEE
Confidence 542 2355454322111 111223333333 466666554
No 88
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=97.94 E-value=2.2e-05 Score=65.65 Aligned_cols=45 Identities=27% Similarity=0.352 Sum_probs=36.5
Q ss_pred eEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCccc
Q 025584 159 TYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLK 207 (250)
Q Consensus 159 ~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~ 207 (250)
..|||+.-.+.+. .|-+|.|++|++ |+..+||.||..||.|+...
T Consensus 24 ieVLlvsSs~~~~---~wi~PKGGwE~d-E~~~eAA~REt~EEAGv~G~ 68 (145)
T KOG2839|consen 24 IEVLLVSSSKKPH---RWIVPKGGWEPD-ESVEEAALRETWEEAGVKGK 68 (145)
T ss_pred eEEEEEecCCCCC---CccCCCCCCCCC-CCHHHHHHHHHHHHhCceee
Confidence 3577776555444 388999999996 79999999999999999864
No 89
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=97.68 E-value=4.3e-05 Score=70.70 Aligned_cols=58 Identities=31% Similarity=0.456 Sum_probs=41.9
Q ss_pred EEEEEEEEcCCCceEEEEEEe-eecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCccc
Q 025584 146 AVAVLILLDSEGETYAILTEQ-VRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLK 207 (250)
Q Consensus 146 aV~VL~il~~~~~~~VlLvrQ-~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~ 207 (250)
+|+..+ +|.+++ |++++. .........|-+|.|.|+++ |++.++|+||++||||++..
T Consensus 117 gvg~~V-~n~~~e--VlVv~e~d~~~~~~~~wK~ptG~v~~~-e~i~~gavrEvkeetgid~e 175 (295)
T KOG0648|consen 117 GVGAFV-LNKKKE--VLVVQEKDGAVKIRGGWKLPTGRVEEG-EDIWHGAVREVKEETGIDTE 175 (295)
T ss_pred eeeeeE-ecCCce--eEEEEecccceeecccccccceEeccc-ccchhhhhhhhHHHhCcchh
Confidence 344443 365544 555432 44445667899999999997 69999999999999999754
No 90
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=97.61 E-value=0.0001 Score=60.83 Aligned_cols=41 Identities=32% Similarity=0.311 Sum_probs=34.7
Q ss_pred CcEEEecceecCCCCCCHHHHHHHHHHHHhCCcccccceeecc
Q 025584 173 RVILELPAGMLDDDKGDFVGTAVREVEEETGIQLKLEDMIDLT 215 (250)
Q Consensus 173 ~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~~~L~~L~ 215 (250)
...|.+|-|..+.| |+++.||+||..||+||.++ .-...++
T Consensus 35 ~GAWSIPKGey~~g-Edp~~AArREf~EE~Gi~vd-GP~~~lG 75 (161)
T COG4119 35 DGAWSIPKGEYTGG-EDPWLAARREFSEEIGICVD-GPRIDLG 75 (161)
T ss_pred CCcccccccccCCC-cCHHHHHHHHhhhhhceeec-Cchhhhh
Confidence 34799999999987 69999999999999999985 5555554
No 91
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=96.80 E-value=0.004 Score=47.78 Aligned_cols=48 Identities=10% Similarity=0.190 Sum_probs=35.4
Q ss_pred cCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCC
Q 025584 154 DSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGI 204 (250)
Q Consensus 154 ~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl 204 (250)
..+++ ++|.++.-....+++||||+|.++.+ ++.+++..||+.||.++
T Consensus 11 ~~~~~--~ll~kR~~~gl~~glwefP~~~~~~~-~~~~~~~~~~~~~~~~~ 58 (118)
T cd03431 11 RNDGR--VLLEKRPEKGLLAGLWEFPSVEWEEE-ADGEEALLSALKKALRL 58 (118)
T ss_pred ecCCe--EEEEECCCCCCCCcceeCCCccccCC-cCHHHHHHHHHHHHhCc
Confidence 43443 77776644444566999999999876 58888888999998763
No 92
>PLN02839 nudix hydrolase
Probab=95.41 E-value=0.077 Score=50.88 Aligned_cols=67 Identities=25% Similarity=0.233 Sum_probs=42.1
Q ss_pred EEEEEEEEcCCCceEEEEEEeeecCC---CCcEE-EecceecCCCCCCHHHHHHHHHHHHhCCccc-ccceeecc
Q 025584 146 AVAVLILLDSEGETYAILTEQVRVPT---GRVIL-ELPAGMLDDDKGDFVGTAVREVEEETGIQLK-LEDMIDLT 215 (250)
Q Consensus 146 aV~VL~il~~~~~~~VlLvrQ~R~p~---~~~~~-ElPAG~vD~geEt~~~AA~REL~EETGl~i~-~~~L~~L~ 215 (250)
+|.+-.++..+++. -|-.+.|... ..++| .+.||.+..| +++.++++||..||.|+... ...++..+
T Consensus 205 GVHlNGyv~~~g~~--~lWV~RRS~tK~t~PGmLDn~VAGGi~aG-esp~etliREa~EEAgLp~~l~~~~~~~G 276 (372)
T PLN02839 205 GVHMNGYVERDGQK--FLWIGKRSLSKSTYPGMLDHLVAGGLPHG-ISCGENLVKECEEEAGISKAIADRAIAVG 276 (372)
T ss_pred EEEEEEEEecCCCe--EEEeeccCCCCCCCCChhhhccccCccCC-CCHHHHHHHHHHHHcCCCHHHHhcceEeE
Confidence 45554444444442 2333445443 33355 5779999997 69999999999999999742 12444444
No 93
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=94.97 E-value=0.084 Score=45.85 Aligned_cols=92 Identities=15% Similarity=0.111 Sum_probs=57.0
Q ss_pred EEEEEEEEcCCCceEEEEEEee-ecCCCCcEE-EecceecCCCCCCHHHHHHHHHHHHhCCcccc-cceeeccccccCCC
Q 025584 146 AVAVLILLDSEGETYAILTEQV-RVPTGRVIL-ELPAGMLDDDKGDFVGTAVREVEEETGIQLKL-EDMIDLTAFLYPST 222 (250)
Q Consensus 146 aV~VL~il~~~~~~~VlLvrQ~-R~p~~~~~~-ElPAG~vD~geEt~~~AA~REL~EETGl~i~~-~~L~~L~~l~~~~~ 222 (250)
|..+.+ +|++|+ +||+|+- +.-.....| .-..|+=-+| |+.++||+|-+.+|+||+++. +.+..+..+-+
T Consensus 35 AFS~~l-Fne~g~--LLltrRA~~K~twP~vWTNSvCsHP~~~-es~~~A~~rRl~~ELGie~~~~d~~~il~rf~Y--- 107 (185)
T COG1443 35 AFSSFL-FNERGQ--LLLTRRALSKKTWPGVWTNSVCSHPLPG-ESNEDAARRRLAYELGIEPDQYDKLEILPRFRY--- 107 (185)
T ss_pred hhheeE-ECCCCc--eeeehhhhhcccCcccccccccCCCcCC-CchHHHHHHHHHHHhCCCCcccCccccccceEE---
Confidence 344444 588887 6666541 111222223 4455666676 699999999999999999862 22333332222
Q ss_pred CceeecCCccccceEEEEEEEce
Q 025584 223 GCKFFPSAVCSFFLHSFFLFLSV 245 (250)
Q Consensus 223 ~~~~~pspG~~dE~i~lFl~~~~ 245 (250)
...+++.+.-.|.++++.++..
T Consensus 108 -rA~~~~~~~E~Eic~V~~~~~~ 129 (185)
T COG1443 108 -RAADPDGIVENEICPVLAARLD 129 (185)
T ss_pred -eccCCCCcceeeeeeEEEEeec
Confidence 4556666777888888887644
No 94
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=94.77 E-value=0.44 Score=41.81 Aligned_cols=88 Identities=18% Similarity=0.242 Sum_probs=52.8
Q ss_pred EEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCccc-cccee---eccccccCCCCce
Q 025584 150 LILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLK-LEDMI---DLTAFLYPSTGCK 225 (250)
Q Consensus 150 L~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~-~~~L~---~L~~l~~~~~~~~ 225 (250)
+++++..+-.+|||.+. +...+-+|||.+.+| |+.+++-.|.|.|-.|..-. ..++. .++.+..|.....
T Consensus 49 Vllvh~h~~PHvLLLq~-----~~~~fkLPGg~l~~g-E~e~~gLkrkL~~~l~~~~~~~~~w~vge~l~~WwRp~Fe~~ 122 (188)
T PF13869_consen 49 VLLVHEHGHPHVLLLQI-----GNTFFKLPGGRLRPG-EDEIEGLKRKLTEKLSPEDGVDPDWEVGECLGTWWRPNFEPF 122 (188)
T ss_dssp EEEEEETTEEEEEEEEE-----TTTEEE-SEEE--TT---HHHHHHHHHHHHHB-SSSS----EEEEEEEEEEESSSSS-
T ss_pred EEEEecCCCcEEEEEec-----cCccccCCccEeCCC-CChhHHHHHHHHHHcCCCcCCCCCcEecCEEEEEeCCCCCCC
Confidence 33456666677888753 222799999999998 68899999999999998632 12332 4666666777777
Q ss_pred eec----CCccccceEEEEEEE
Q 025584 226 FFP----SAVCSFFLHSFFLFL 243 (250)
Q Consensus 226 ~~p----spG~~dE~i~lFl~~ 243 (250)
+|| ...--.|.+.+|+..
T Consensus 123 ~YPYlP~HitkPKE~~klylV~ 144 (188)
T PF13869_consen 123 MYPYLPPHITKPKECIKLYLVQ 144 (188)
T ss_dssp -BSS--TT-SS-SEEEEEEEEE
T ss_pred CCCCCCcccCChhheeEEEEEe
Confidence 777 223446788888774
No 95
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=94.56 E-value=0.037 Score=49.78 Aligned_cols=30 Identities=30% Similarity=0.358 Sum_probs=26.4
Q ss_pred CcEEEecceecCCCCCCHHHHHHHHHHHHhC
Q 025584 173 RVILELPAGMLDDDKGDFVGTAVREVEEETG 203 (250)
Q Consensus 173 ~~~~ElPAG~vD~geEt~~~AA~REL~EETG 203 (250)
..-|.+||||+|+| |..-.+.+||+.||.=
T Consensus 149 ~~~WAiPGGmvdpG-E~vs~tLkRef~eEa~ 178 (275)
T KOG4195|consen 149 NGEWAIPGGMVDPG-EKVSATLKREFGEEAM 178 (275)
T ss_pred CCcccCCCCcCCch-hhhhHHHHHHHHHHHH
Confidence 34699999999998 6999999999999974
No 96
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=89.76 E-value=0.12 Score=48.81 Aligned_cols=49 Identities=29% Similarity=0.427 Sum_probs=37.8
Q ss_pred EcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCccc
Q 025584 153 LDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLK 207 (250)
Q Consensus 153 l~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~ 207 (250)
+++... +++|+.+... -.|.+|-|.+..+ |+-.+||.||+.||||.+..
T Consensus 90 ld~~~s-r~llv~g~qa----~sw~fprgK~~kd-esd~~caiReV~eetgfD~s 138 (348)
T KOG2937|consen 90 LDEKRS-RCLLVKGWQA----SSWSFPRGKISKD-ESDSDCAIREVTEETGFDYS 138 (348)
T ss_pred hhhhhh-hhheeeceec----ccccccCcccccc-chhhhcchhcccchhhcCHH
Confidence 455443 5777776432 2499999999985 68889999999999999874
No 97
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=89.17 E-value=1.4 Score=38.38 Aligned_cols=92 Identities=18% Similarity=0.235 Sum_probs=56.1
Q ss_pred EEEEEEEEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCccc-ccce---eeccccccCC
Q 025584 146 AVAVLILLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLK-LEDM---IDLTAFLYPS 221 (250)
Q Consensus 146 aV~VL~il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~-~~~L---~~L~~l~~~~ 221 (250)
+|--++++++.+-.+++|. |. |..++.+|||.+.+| |+-++...|=+-|-+|-... ..+| .+++.+..|.
T Consensus 71 svegvlivheH~lPHvLLL-Qi----g~tf~KLPGG~L~pG-E~e~~Gl~r~l~~~Lgr~dg~~~dwtv~ecig~WWRPN 144 (221)
T KOG1689|consen 71 SVEGVLIVHEHNLPHVLLL-QI----GNTFFKLPGGRLRPG-EDEADGLKRLLTESLGRSDGLVIDWTVGECIGNWWRPN 144 (221)
T ss_pred eeeeeEEEeecCCCeEEEE-ee----CCEEEecCCCccCCC-cchhHHHHHHHHHHhcccccccccccHhhhhhcccCCC
Confidence 3333344566555566665 53 456899999999998 58889999999999992211 0111 1345555565
Q ss_pred CCceeecCC--c--cccceEEEEEEE
Q 025584 222 TGCKFFPSA--V--CSFFLHSFFLFL 243 (250)
Q Consensus 222 ~~~~~~psp--G--~~dE~i~lFl~~ 243 (250)
....+||-. - --.|...+|+..
T Consensus 145 Fe~~~YPyiP~hitkPKeh~kL~lV~ 170 (221)
T KOG1689|consen 145 FETPMYPYIPPHITKPKEHTKLFLVQ 170 (221)
T ss_pred CCCcccCCCCcccCCchhccEEEEEE
Confidence 566666632 1 124556666664
No 98
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=88.01 E-value=0.55 Score=36.50 Aligned_cols=52 Identities=19% Similarity=0.270 Sum_probs=28.1
Q ss_pred EEcCCCceEEEEEEeeecCCCCcEEEecceecCCCCCCHHHHHHHHHHHHhCCccc
Q 025584 152 LLDSEGETYAILTEQVRVPTGRVILELPAGMLDDDKGDFVGTAVREVEEETGIQLK 207 (250)
Q Consensus 152 il~~~~~~~VlLvrQ~R~p~~~~~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~ 207 (250)
+++.+++ ++|.+++-...-+++||||.--++.. +..+.+.+.+.+..|+.+.
T Consensus 4 i~~~~~~--~Ll~kRp~~gll~GLwefP~~e~~~~--~~~~~l~~~~~~~~~~~~~ 55 (114)
T PF14815_consen 4 IIRSQGR--VLLEKRPEKGLLAGLWEFPLIESDEE--DDEEELEEWLEEQLGLSIR 55 (114)
T ss_dssp EEETTSE--EEEEE--SSSTTTT-EE--EEE-SSS---CHHHHHHHTCCSSS-EEE
T ss_pred EEEeCCE--EEEEECCCCChhhcCcccCEeCccCC--CCHHHHHHHHHHHcCCChh
Confidence 3466664 77777655555567999999777742 3345555566677787653
No 99
>PF13355 DUF4101: Protein of unknown function (DUF4101)
Probab=49.38 E-value=64 Score=25.73 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=38.7
Q ss_pred eCCCCCHHhHhhhhcCchHHHHHHHhhhhcccccCCCcce--EEEEEeeEeeecc
Q 025584 64 AAPGLSESDFRCAVESTLFKQWLKNLQSETGILANGDMLL--KQVLIQGVDMFGK 116 (250)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~f~~W~~~l~~~~~l~~~~~~~L--~~i~v~~vd~fg~ 116 (250)
|.|.-.-+.|.+++.-+..+.|...-+. +..+++|-- .++.|++++.|..
T Consensus 16 lg~~~~~~~L~~vl~g~ll~~w~~~a~~---~~~~g~y~~y~~~~~I~sv~~~~~ 67 (117)
T PF13355_consen 16 LGPPHDIDSLSEVLTGPLLSQWQDRAQW---LKANGWYWEYDHKLKIDSVEVFSD 67 (117)
T ss_pred hCCCcchhHHHHHhhHHHHHHHHHHHHH---HHHcCCeEEEeeeeEEEEEEEcCC
Confidence 4556667789999999999999877664 455666655 5789999999984
No 100
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=48.75 E-value=15 Score=31.85 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=17.7
Q ss_pred ceecCCCC--CCHH----HHHHHHHHHHhCCcc
Q 025584 180 AGMLDDDK--GDFV----GTAVREVEEETGIQL 206 (250)
Q Consensus 180 AG~vD~ge--Et~~----~AA~REL~EETGl~i 206 (250)
||++.+++ ++.+ ..+.|||+||.|+.-
T Consensus 97 GGHmn~~~GA~s~~evLk~n~~REleEEv~vse 129 (203)
T COG4112 97 GGHMNEGDGATSREEVLKGNLERELEEEVDVSE 129 (203)
T ss_pred ccccccCCCcccHHHHHccchHHHHHHHhCcCH
Confidence 56665543 2222 338899999999973
No 101
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=44.98 E-value=20 Score=23.98 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=11.9
Q ss_pred ecceecCCCCCCHHHHHHHHHHHHh
Q 025584 178 LPAGMLDDDKGDFVGTAVREVEEET 202 (250)
Q Consensus 178 lPAG~vD~geEt~~~AA~REL~EET 202 (250)
.-||...+| .-+-..|.|||-||.
T Consensus 13 ClggLasPg-Pvp~~~alkELIeEL 36 (43)
T PF03487_consen 13 CLGGLASPG-PVPSSTALKELIEEL 36 (43)
T ss_dssp -----------S-HHHHHHHHHHHH
T ss_pred HhcccCCCC-CCCchHHHHHHHHHH
Confidence 346677775 578889999999996
No 102
>PF14443 DBC1: DBC1
Probab=33.20 E-value=53 Score=27.16 Aligned_cols=40 Identities=25% Similarity=0.292 Sum_probs=26.6
Q ss_pred EEEecceecCCCCCCHHHHHHHHHHHHhCCcccc-cceeec
Q 025584 175 ILELPAGMLDDDKGDFVGTAVREVEEETGIQLKL-EDMIDL 214 (250)
Q Consensus 175 ~~ElPAG~vD~geEt~~~AA~REL~EETGl~i~~-~~L~~L 214 (250)
.-+|=||--+.+...+..+|+|=.+|-||+++.. .+|..+
T Consensus 27 spsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS~Ct~W~rf 67 (126)
T PF14443_consen 27 SPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLSNCTQWYRF 67 (126)
T ss_pred CcccCCCCCCCCcHHHHHHHHHHHHHHhccchhhcCcccee
Confidence 3344455444433468999999999999999753 344444
No 103
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.24 E-value=49 Score=29.67 Aligned_cols=39 Identities=28% Similarity=0.367 Sum_probs=26.5
Q ss_pred cceecCCCCCCHHHHHHHHHHHHhCCccc---ccceeecccc
Q 025584 179 PAGMLDDDKGDFVGTAVREVEEETGIQLK---LEDMIDLTAF 217 (250)
Q Consensus 179 PAG~vD~geEt~~~AA~REL~EETGl~i~---~~~L~~L~~l 217 (250)
|+++.+........||.|-|.-|+||... ++++..|+.+
T Consensus 94 ~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~~~ltri 135 (225)
T KOG0142|consen 94 PGELEENDALGVRRAAQRKLKAELGIPLEEVPPEEFNFLTRI 135 (225)
T ss_pred hhhhccCchHHHHHHHHHHHHHhhCCCccccCHHHcccceee
Confidence 34443332235788999999999999864 4567777644
No 104
>PF06615 DUF1147: Protein of unknown function (DUF1147); InterPro: IPR009527 This family consists of several short Circovirus proteins of unknown function.
Probab=23.95 E-value=73 Score=22.18 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=19.0
Q ss_pred EEEEeeecCCCCcEEEecceecC
Q 025584 162 ILTEQVRVPTGRVILELPAGMLD 184 (250)
Q Consensus 162 lLvrQ~R~p~~~~~~ElPAG~vD 184 (250)
+|+.|-|.|..+.-+|-.+||+.
T Consensus 17 llilqtrkphtgnhletsggmvt 39 (59)
T PF06615_consen 17 LLILQTRKPHTGNHLETSGGMVT 39 (59)
T ss_pred EEEEEccCCCCCCceeccCCeeh
Confidence 56778888987778899999875
No 105
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=21.47 E-value=1.3e+02 Score=27.99 Aligned_cols=48 Identities=23% Similarity=0.283 Sum_probs=32.2
Q ss_pred eeecCCCC---cEE-EecceecCCCCCCHHHHHHHHHHHHhCCccc-ccceeec
Q 025584 166 QVRVPTGR---VIL-ELPAGMLDDDKGDFVGTAVREVEEETGIQLK-LEDMIDL 214 (250)
Q Consensus 166 Q~R~p~~~---~~~-ElPAG~vD~geEt~~~AA~REL~EETGl~i~-~~~L~~L 214 (250)
|.|.+... ..| .+-||.+--|. ...++|++|..||..+..+ ..++...
T Consensus 153 prRS~TKqTWP~~lDN~vaGGl~~g~-gI~eT~iKE~~EEAnl~~~~~~Nlv~~ 205 (306)
T KOG4313|consen 153 PRRSNTKQTWPGKLDNMVAGGLSVGF-GIKETAIKEAAEEANLPSDLVKNLVSA 205 (306)
T ss_pred cccCCccccCcchhhhhhccccccCc-hHHHHHHHHHHHhcCCchhhHhcceec
Confidence 44555432 233 45678777764 8999999999999999863 2344443
Done!