Query 025586
Match_columns 250
No_of_seqs 57 out of 59
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 13:21:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025586.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025586hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jx3_A Protein DEK; alpha heli 80.6 8.8 0.0003 31.0 8.5 93 60-176 14-108 (131)
2 1kdx_B CREB; complex (transcri 35.4 18 0.00062 22.8 1.6 13 138-150 12-24 (28)
3 1oey_A P67-PHOX, neutrophil cy 35.3 20 0.00069 27.1 2.3 27 130-156 14-40 (83)
4 2vzs_A CSXA, EXO-beta-D-glucos 22.9 32 0.0011 35.3 1.9 37 118-155 374-411 (1032)
5 1ij5_A Plasmodial specific LAV 19.8 4.3E+02 0.015 22.8 8.9 73 71-154 17-100 (323)
6 1rp3_A RNA polymerase sigma fa 19.5 2E+02 0.0068 22.3 5.5 37 141-177 20-56 (239)
7 1x1f_A Signal-transducing adap 18.5 62 0.0021 25.7 2.4 51 103-153 91-141 (149)
8 2al3_A TUG long isoform; TUG U 16.5 62 0.0021 24.8 1.8 18 139-156 29-46 (90)
9 2q1z_A RPOE, ECF SIGE; ECF sig 15.7 1.1E+02 0.0037 23.1 3.1 35 142-179 36-70 (184)
10 2o7g_A Probable RNA polymerase 15.4 75 0.0026 22.6 1.9 33 141-177 32-64 (112)
No 1
>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens}
Probab=80.61 E-value=8.8 Score=31.00 Aligned_cols=93 Identities=15% Similarity=0.170 Sum_probs=57.2
Q ss_pred chHHHHHHHhhChHHHHHHHHHhcCCCCCCc--cchhhcccCCcchHHHhhhhHHHHHHHHHHHHHHhhhcccccchhcc
Q 025586 60 DPELRSVLELATDSELYELERILFGPSYFSP--LLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRG 137 (250)
Q Consensus 60 d~ELr~~LeLATdEEL~eL~~ILf~~r~fsP--LlkS~~kr~~~Dy~~~~~~~~~R~~~i~~IE~RfqfLAADs~tvLRG 137 (250)
.|.+...+...+-++|..|.+|||++. ... +-+++..=.+..+. .++.+++.-.+.|+
T Consensus 14 Ip~V~~~i~k~k~d~Lk~LH~ilfgr~-Gk~~~~KknI~~FsGF~~~---~~~~~~~k~~e~l~---------------- 73 (131)
T 2jx3_A 14 IERIHFFLSKKKTDELRNLHKLLYNRP-GTVSSLKKNVGQFSGFPFE---KGSVQYKKKEEMLK---------------- 73 (131)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTSSSC-CCSHHHHHHHHTSSCSSCC---CSSHHHHHHHHHHH----------------
T ss_pred cHHHHHHHcccCHHHHHHHHHHHcCCC-ChHhHHHHHHHhcCCCCCC---ccHHHHHHHHHHHH----------------
Confidence 466777788888889999999999886 333 11222211122221 12223332223332
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHh
Q 025586 138 WRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQ 176 (250)
Q Consensus 138 ~~vsYReVLl~VckkLKI~~s~klsT~dLEaEIFLhLL~ 176 (250)
.....-|.++|+=|+|+++. +.+||-+.|+-.|+.
T Consensus 74 --K~~~~~L~~~c~iL~l~~~g--~keelv~ril~FL~~ 108 (131)
T 2jx3_A 74 --KFRNAMLKSICEVLDLERSG--VNSELVKRILNFLMH 108 (131)
T ss_dssp --HHHHHHHHHHHHTTTCCSCS--CHHHHHHHHHHTTTS
T ss_pred --ccCHHHHHHHHHHHCCCCCC--cHHHHHHHHHHHHhC
Confidence 12467899999999999984 578888887766553
No 2
>1kdx_B CREB; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Rattus norvegicus}
Probab=35.43 E-value=18 Score=22.84 Aligned_cols=13 Identities=46% Similarity=0.810 Sum_probs=10.8
Q ss_pred CCchHHHHHHHHH
Q 025586 138 WRPSYRNVLLAVR 150 (250)
Q Consensus 138 ~~vsYReVLl~Vc 150 (250)
++||||.||-+..
T Consensus 12 rrpSYrkIlndls 24 (28)
T 1kdx_B 12 RRPSYRKILNDLS 24 (28)
T ss_dssp TSTHHHHHHHHHH
T ss_pred cCchHHHHHHhhc
Confidence 6899999998764
No 3
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=35.30 E-value=20 Score=27.07 Aligned_cols=27 Identities=19% Similarity=0.025 Sum_probs=21.7
Q ss_pred cccchhccCCchHHHHHHHHHHhcCCC
Q 025586 130 DARSTLRGWRPSYRNVLLAVRKNLNIP 156 (250)
Q Consensus 130 Ds~tvLRG~~vsYReVLl~VckkLKI~ 156 (250)
|++.+==.++.+|++..-.||+||+++
T Consensus 14 ~tvairvp~~~~y~~L~~~l~~kL~l~ 40 (83)
T 1oey_A 14 YTVVMKTQPGLPYSQVRDMVSKKLELR 40 (83)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHTTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 444433357999999999999999997
No 4
>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine, glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis orientalis} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2x05_A* 2x09_A* 2vzo_A 2vzt_A* 2vzv_A* 2vzu_A*
Probab=22.88 E-value=32 Score=35.32 Aligned_cols=37 Identities=8% Similarity=0.178 Sum_probs=29.5
Q ss_pred HHHHHHHhhhcccccchhc-cCCchHHHHHHHHHHhcCC
Q 025586 118 ASLESRFLFLAADARSTLR-GWRPSYRNVLLAVRKNLNI 155 (250)
Q Consensus 118 ~~IE~RfqfLAADs~tvLR-G~~vsYReVLl~VckkLKI 155 (250)
+.++..|+.+-.=++|++| |+.| ..+.+++.||+|||
T Consensus 374 e~~~~dl~~~k~~g~N~iR~~h~~-~~~~fydlcDelGi 411 (1032)
T 2vzs_A 374 TAAADKLKYVLNLGLNTVRLEGHI-EPDEFFDIADDLGV 411 (1032)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESCC-CCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCEEECCCCC-CcHHHHHHHHHCCC
Confidence 4456666766666789999 5677 89999999999998
No 5
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Probab=19.81 E-value=4.3e+02 Score=22.75 Aligned_cols=73 Identities=25% Similarity=0.241 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHhcCCCCCCccchhhcccCCcchHH----HhhhhHHHHHHHHHHHHHHhhhcccc-------cchhccCC
Q 025586 71 TDSELYELERILFGPSYFSPLLKSFTKRADVDYVM----IEQDLEEREDFIASLESRFLFLAADA-------RSTLRGWR 139 (250)
Q Consensus 71 TdEEL~eL~~ILf~~r~fsPLlkS~~kr~~~Dy~~----~~~~~~~R~~~i~~IE~RfqfLAADs-------~tvLRG~~ 139 (250)
-.||+++|.+-|-+++.-+| -|... +.+..|+|+.|+...-+|.+-= +|+ +.-.+|..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~a~g~~ 85 (323)
T 1ij5_A 17 VHENLEELQKKLDHTSFAHK----------EDRDRLEAQIAQKEQEQKAKLAEYDQKVQNE-FDARERAEREREAARGDA 85 (323)
T ss_dssp HHHHHHHHHHHHTTCCCC---------------CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh-hhhhHHHHHHHHhhcCCC
Confidence 35899999999999987777 44433 5677888889988875555211 011 12223445
Q ss_pred chHHHHHHHHHHhcC
Q 025586 140 PSYRNVLLAVRKNLN 154 (250)
Q Consensus 140 vsYReVLl~VckkLK 154 (250)
...++.+..|.++|+
T Consensus 86 ~~e~q~~~~vl~~l~ 100 (323)
T 1ij5_A 86 AAEKQRLASLLKDLE 100 (323)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred CCcchhhHHHHHHHH
Confidence 556666677777666
No 6
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=19.45 E-value=2e+02 Score=22.34 Aligned_cols=37 Identities=16% Similarity=0.244 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhh
Q 025586 141 SYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQE 177 (250)
Q Consensus 141 sYReVLl~VckkLKI~~s~klsT~dLEaEIFLhLL~~ 177 (250)
.|...+..+|.++.-.+......+||-+|.|+.+++.
T Consensus 20 ~~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~l~~~ 56 (239)
T 1rp3_A 20 KYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKA 56 (239)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 3666777777776544456778999999999999977
No 7
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=18.54 E-value=62 Score=25.72 Aligned_cols=51 Identities=16% Similarity=0.087 Sum_probs=38.2
Q ss_pred hHHHhhhhHHHHHHHHHHHHHHhhhcccccchhccCCchHHHHHHHHHHhc
Q 025586 103 YVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNL 153 (250)
Q Consensus 103 y~~~~~~~~~R~~~i~~IE~RfqfLAADs~tvLRG~~vsYReVLl~VckkL 153 (250)
|.......++|+.|+..|-.=...=.....+.+-|.-+.-+++|.+|=++.
T Consensus 91 ~~f~A~s~ee~~eWi~aI~~v~~~~~p~~~~l~p~~~~~~~~~l~~~~~r~ 141 (149)
T 1x1f_A 91 VQLKTENTESGEEWRGFILTVTELSVPQNVSLLPGQVIKLHEVLEREKKRR 141 (149)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHHHHHcccCCCccccCccchHHHHHHHHHHHHHH
Confidence 334566788999999999765554444457888898888899999876654
No 8
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=16.52 E-value=62 Score=24.84 Aligned_cols=18 Identities=11% Similarity=0.062 Sum_probs=16.1
Q ss_pred CchHHHHHHHHHHhcCCC
Q 025586 139 RPSYRNVLLAVRKNLNIP 156 (250)
Q Consensus 139 ~vsYReVLl~VckkLKI~ 156 (250)
.-+-.|||.++|+|+|++
T Consensus 29 ~t~L~~VL~eaC~K~gl~ 46 (90)
T 2al3_A 29 STVLLQVLEDTCRRQDFN 46 (90)
T ss_dssp TSBHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHhCCC
Confidence 567889999999999995
No 9
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=15.72 E-value=1.1e+02 Score=23.13 Aligned_cols=35 Identities=9% Similarity=0.072 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhhhh
Q 025586 142 YRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYA 179 (250)
Q Consensus 142 YReVLl~VckkLKI~~s~klsT~dLEaEIFLhLL~~~s 179 (250)
|...|..+|.++ +...-..+|+-+|.|+.+++...
T Consensus 36 ~~~~l~~~~~~~---~~~~~~aeD~~Qe~~l~~~~~~~ 70 (184)
T 2q1z_A 36 FAPKVKGFLMKS---GSVASQAEECAQDVMATVWQKAH 70 (184)
T ss_dssp HHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHH---cCCHhHHHHHHHHHHHHHHHhhh
Confidence 556666666665 23445789999999999987643
No 10
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor, transcription regulation, -10 element recognit domain, transcription; 2.70A {Mycobacterium tuberculosis}
Probab=15.41 E-value=75 Score=22.61 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhh
Q 025586 141 SYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQE 177 (250)
Q Consensus 141 sYReVLl~VckkLKI~~s~klsT~dLEaEIFLhLL~~ 177 (250)
.|+..|..+|.++ . ..-..+|+=+|.|+.+.++
T Consensus 32 ~~~~~l~~~~~~~-~---~~~~aeD~vQe~fl~~~~~ 64 (112)
T 2o7g_A 32 ATQQDVWRFVAYL-S---DVGSADDLTQETFLRAIGA 64 (112)
T ss_dssp HHHHHHHHHHHHH-S---CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-C---CHHHHHHHHHHHHHHHHHH
Confidence 4677777888766 2 3346899999999999987
Done!