BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025587
(250 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LYA9|CP41A_ARATH Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic
OS=Arabidopsis thaliana GN=CSP41A PE=1 SV=1
Length = 406
Score = 335 bits (858), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 159/195 (81%), Positives = 172/195 (88%), Gaps = 1/195 (0%)
Query: 56 SSRRSSVSAFTVKASA-AEKKKVLIVNTNSGGHAVIGFYLAKELLGSGHEVTIMTVGDEN 114
+SRR S FTVKAS+ EKK VLIVNTNSGGHAVIGFY AKELL +GH VTI+TVGDE+
Sbjct: 60 TSRRLSPQKFTVKASSVGEKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTILTVGDES 119
Query: 115 SDKMKKPPFNRFNEIVSAGGKTVWGDPAEVGNVVGGVTFDVVLDNNGKNLDAVRPVADWA 174
S+KMKKPPFNRF+EIVS GGKTVWG+PA V NVVGG TFDVVLDNNGK+LD VRPV DWA
Sbjct: 120 SEKMKKPPFNRFSEIVSGGGKTVWGNPANVANVVGGETFDVVLDNNGKDLDTVRPVVDWA 179
Query: 175 KSSGVKQFLFISSAGIYKPADEPPHVEGDVVKPDAGHVQVEKYISENFSNWASFRPQYMI 234
KSSGVKQFLFISSAGIYK ++PPHVEGD VK DAGHV VEKY++E F NWASFRPQYMI
Sbjct: 180 KSSGVKQFLFISSAGIYKSTEQPPHVEGDAVKADAGHVVVEKYLAETFGNWASFRPQYMI 239
Query: 235 GSGNNKDCEEWFFDR 249
GSGNNKDCEEWFFDR
Sbjct: 240 GSGNNKDCEEWFFDR 254
>sp|Q9SA52|CP41B_ARATH Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic
OS=Arabidopsis thaliana GN=CSP41B PE=1 SV=1
Length = 378
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 95/188 (50%), Gaps = 16/188 (8%)
Query: 70 SAAEKKKVLIVNTNSGGHAVIGFYLAKELLGSGHEVTIMTVGDENSDKMKKPPFNRFNEI 129
SA+ +KK+LI+ GG IG +L++ L+ GH+VT+ T G S K+ P +
Sbjct: 49 SASSEKKILIM----GGTRFIGLFLSRILVKEGHQVTLFTRG--KSPIAKQLPGESDQDF 102
Query: 130 VSAGGKTVW--GDPAEVGNVVGGVT---FDVVLDNNGKNLDAVRPVADWAKSSGVKQFLF 184
K + GD + V ++ FDVV D NG+ + V P+ + ++Q+++
Sbjct: 103 ADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILEALPK--LEQYIY 160
Query: 185 ISSAGIYKPADEPPHVEGDVVKPDAGH---VQVEKYISENFSNWASFRPQYMIGSGNNKD 241
SSAG+Y +D PH E D V P + H ++ E + NW S RP Y+ G N
Sbjct: 161 CSSAGVYLKSDILPHCEEDAVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNP 220
Query: 242 CEEWFFDR 249
EEWFF R
Sbjct: 221 VEEWFFHR 228
>sp|Q493Q1|MURG_BLOPB UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Blochmannia pennsylvanicus (strain BPEN)
GN=murG PE=3 SV=1
Length = 355
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 73 EKKKVLIVNTNSGGHAVIGFYLAKELLGSGHEVTIMTVGDENSDKM 118
+KKK++IV SGGH G +A L+ G++V + D K+
Sbjct: 3 QKKKIMIVAGGSGGHVFPGLSVAHYLINHGYQVVWLGTADRIESKL 48
>sp|B6IRG2|MURG_RHOCS UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Rhodospirillum centenum (strain ATCC
51521 / SW) GN=murG PE=3 SV=1
Length = 379
Score = 34.3 bits (77), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 77 VLIVNTNSGGHAVIGFYLAKELLGSGHEVTIMT--VGDENSDKMKKPPFNRFNEIVSAGG 134
+++ +GGH LA+ELL GH V ++T G D +++ P +R GG
Sbjct: 6 IVLAAGGTGGHLFPAEALARELLERGHRVVLVTDVRGTAFGDALREVPVHRIRSATLGGG 65
>sp|Q1GRX9|MURG_SPHAL UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Sphingopyxis alaskensis (strain DSM 13593
/ LMG 18877 / RB2256) GN=murG PE=3 SV=1
Length = 392
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 75 KKVLIVNTNSGGHAVIGFYLAKELLGSGHEVTIMTVGDENSDKMKKPPFNRFNEIVSAG 133
+ L+ +GGH + + LA EL+ GH V + V D+ K+ P ++ AG
Sbjct: 5 RHFLLAAGGTGGHMLPAYALADELIARGHRVAL--VSDDRGLKIPGAPAELETHVLPAG 61
>sp|Q8DW43|ILVC_STRMU Ketol-acid reductoisomerase OS=Streptococcus mutans serotype c
(strain ATCC 700610 / UA159) GN=ilvC PE=3 SV=1
Length = 340
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 67 VKASAAEKKKVLIVNTNSGGHAVIGFYLAKELLGSGHEVTIMTVGDENSDKMKKPPFNRF 126
VK +A + KK+ ++ S GHA A+ L SGH+V I ++ DK K+ F+ +
Sbjct: 11 VKVAALDGKKIAVIGYGSQGHA-----HAQNLRDSGHDVIIGVRHGKSFDKAKEDGFDTY 65
Query: 127 N 127
Sbjct: 66 E 66
>sp|Q8LEU3|NOL_ARATH Chlorophyll(ide) b reductase NOL, chloroplastic OS=Arabidopsis
thaliana GN=NOL PE=2 SV=1
Length = 348
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 41/176 (23%)
Query: 27 PSLRLSFSSYSHLSSLVSISPSSF---------LACPASSRRS---SVSAFTVKASAAEK 74
P LRL SS S+++ L +SP LA +R++ + S+ V+A + K
Sbjct: 13 PLLRLRSSSVSNVTKLPFLSPICRRRLLAERFGLATVVVTRQNLTVTPSSAAVEARISGK 72
Query: 75 KK-------VLIVNTNSGGHAVIGFYLAKELLGSGHEVTIMTVGDENSDKMKKPPFNRFN 127
++ +LI + G IG+ LA+E L +G V I + E + + F
Sbjct: 73 REPMTPPYNILITGSTKG----IGYALAREFLKAGDNVVICSRSAERVETAVQSLKEEF- 127
Query: 128 EIVSAGGKTVWG---DPAEVGNVVGGVTF--------DVVLDNNGKNLDAVRPVAD 172
G+ VWG D E +V V + D+ ++N G N + +P+A+
Sbjct: 128 ------GEHVWGTKCDVTEGKDVRELVAYSQKNLKYIDIWINNAGSNAYSFKPLAE 177
>sp|Q2H8T2|AMPP1_CHAGB Probable Xaa-Pro aminopeptidase P OS=Chaetomium globosum (strain
ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL
1970) GN=AMPP PE=3 SV=1
Length = 624
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 48 SSFLACPASSRRSSVSAFTVKASAAEKKKVLIVNTNSGGHAVIGFYL---AKELLGSGHE 104
S ++A P RR+ +S FT A A +V + A G Y K+L G+ H
Sbjct: 37 SEYIA-PCDGRRAFISGFTGSAGTA------VVTQDKAALATDGRYFNQAGKQLDGNWH- 88
Query: 105 VTIMTVGDENSDKMKKPPFNRFNEIVSAGGKTVWGDPAEVGNVVGGVTFDVVLDNNGKNL 164
++ G ++ P + + SAGGKTV DP+ + + + + + + G L
Sbjct: 89 --LLKTGLQDV-----PTWQDWTAEASAGGKTVGVDPSLISSPIAEKLDESIKKSGGAGL 141
Query: 165 DAV 167
AV
Sbjct: 142 KAV 144
>sp|P33119|GALE_CORDI UDP-glucose 4-epimerase OS=Corynebacterium diphtheriae (strain ATCC
700971 / NCTC 13129 / Biotype gravis) GN=galE PE=3 SV=2
Length = 328
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 53/138 (38%), Gaps = 34/138 (24%)
Query: 84 SGGHAVIGFYLAKELLGSGHEVTI---MTVGDENSDKMKKPPFNRFNEIVSAGGKTVWGD 140
+GG +G + LL GHEVTI +T G+ ++ V G V GD
Sbjct: 6 TGGAGYVGSVCSTVLLEQGHEVTIVDNLTTGNRDA--------------VPLGATFVEGD 51
Query: 141 PAEVG-NVVGGVTFDVVLDNNGK----------------NLDAVRPVADWAKSSGVKQFL 183
+V NV+ +FD VL + N+ + D K + V+ +
Sbjct: 52 IKDVADNVLSSDSFDAVLHFAARSLVGESVEKPDEYWQHNMVTTLALLDAMKRNNVRNIV 111
Query: 184 FISSAGIYKPADEPPHVE 201
F S+A Y + P E
Sbjct: 112 FSSTAATYGEPETVPITE 129
>sp|A3CQ86|ILVC_STRSV Ketol-acid reductoisomerase OS=Streptococcus sanguinis (strain
SK36) GN=ilvC PE=3 SV=1
Length = 340
Score = 30.8 bits (68), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 67 VKASAAEKKKVLIVNTNSGGHAVIGFYLAKELLGSGHEVTIMTVGDENSDKMKKPPFNRF 126
VK +A + KK+ ++ S GHA A+ L +GH+V I ++ DK K+ F+ +
Sbjct: 11 VKVAALDGKKIAVIGYGSQGHA-----HAQNLRDTGHDVIIGVRPGKSFDKAKEDGFDTY 65
Query: 127 N 127
Sbjct: 66 T 66
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,602,980
Number of Sequences: 539616
Number of extensions: 4195263
Number of successful extensions: 9418
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 9267
Number of HSP's gapped (non-prelim): 195
length of query: 250
length of database: 191,569,459
effective HSP length: 115
effective length of query: 135
effective length of database: 129,513,619
effective search space: 17484338565
effective search space used: 17484338565
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)