Query 025588
Match_columns 250
No_of_seqs 130 out of 1322
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 07:22:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025588.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025588hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02879 L-ascorbate peroxidas 100.0 2E-78 4.4E-83 532.4 24.5 250 1-250 2-251 (251)
2 PLN02364 L-ascorbate peroxidas 100.0 1.2E-76 2.6E-81 522.0 24.7 249 1-249 1-250 (250)
3 PLN02608 L-ascorbate peroxidas 100.0 1.3E-76 2.9E-81 528.9 24.8 245 5-249 3-247 (289)
4 cd00691 ascorbate_peroxidase A 100.0 7.9E-72 1.7E-76 493.0 23.3 243 6-248 2-252 (253)
5 PLN03030 cationic peroxidase; 100.0 3.3E-69 7.2E-74 487.6 17.7 230 2-249 31-311 (324)
6 cd00693 secretory_peroxidase H 100.0 3.1E-68 6.7E-73 480.0 19.3 230 2-249 8-286 (298)
7 cd00692 ligninase Ligninase an 100.0 8.8E-63 1.9E-67 447.3 23.0 229 20-249 21-278 (328)
8 cd00649 catalase_peroxidase_1 100.0 2E-61 4.3E-66 445.0 19.4 235 14-248 42-397 (409)
9 cd00314 plant_peroxidase_like 100.0 5.8E-59 1.2E-63 412.4 20.4 218 26-243 11-255 (255)
10 TIGR00198 cat_per_HPI catalase 100.0 5.2E-57 1.1E-61 439.3 19.0 228 16-243 54-397 (716)
11 PF00141 peroxidase: Peroxidas 100.0 9.2E-59 2E-63 405.5 6.0 198 12-226 1-230 (230)
12 PRK15061 catalase/hydroperoxid 100.0 2.1E-55 4.6E-60 425.9 19.4 230 14-243 54-403 (726)
13 cd08201 plant_peroxidase_like_ 100.0 8.5E-54 1.9E-58 376.1 14.8 209 28-243 37-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 2.2E-51 4.8E-56 364.9 20.3 228 13-245 13-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 7.4E-46 1.6E-50 361.3 20.5 228 13-245 431-709 (716)
16 PRK15061 catalase/hydroperoxid 100.0 8.5E-45 1.8E-49 352.2 20.4 227 14-245 439-721 (726)
17 COG0376 KatG Catalase (peroxid 100.0 5.4E-42 1.2E-46 319.7 16.7 233 16-248 69-419 (730)
18 COG0376 KatG Catalase (peroxid 99.9 2.7E-23 5.9E-28 194.8 12.7 228 13-245 448-725 (730)
19 PF09533 DUF2380: Predicted li 40.0 23 0.00051 30.0 2.3 32 138-169 107-138 (188)
20 PF08383 Maf_N: Maf N-terminal 38.4 20 0.00044 22.1 1.2 14 147-160 20-34 (35)
21 cd07922 CarBa CarBa is the A s 34.4 28 0.00061 25.6 1.7 30 219-248 19-59 (81)
22 TIGR00874 talAB transaldolase. 29.0 81 0.0018 29.1 4.2 59 105-163 165-239 (317)
23 PRK13859 type IV secretion sys 27.9 43 0.00093 22.5 1.6 30 96-125 9-41 (55)
24 PTZ00411 transaldolase-like pr 27.3 93 0.002 28.9 4.3 58 107-164 179-252 (333)
25 cd00957 Transaldolase_TalAB Tr 26.8 88 0.0019 28.8 4.0 56 107-162 167-238 (313)
26 PRK05269 transaldolase B; Prov 26.5 51 0.0011 30.4 2.4 58 107-164 169-242 (318)
27 PRK12346 transaldolase A; Prov 25.4 1E+02 0.0022 28.5 4.1 59 106-164 167-241 (316)
28 PF10937 DUF2638: Protein of u 24.3 73 0.0016 24.9 2.6 29 131-159 80-108 (112)
29 PRK12309 transaldolase/EF-hand 23.1 1.3E+02 0.0028 28.7 4.5 58 107-164 173-246 (391)
30 PF04225 OapA: Opacity-associa 21.3 71 0.0015 23.4 1.9 24 139-162 11-34 (85)
No 1
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=2e-78 Score=532.43 Aligned_cols=250 Identities=84% Similarity=1.407 Sum_probs=244.0
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCchhHHHHHhhccccccccCCCCCCCCCcccCcccccccccCchHHHHHH
Q 025588 1 MGKCYPKVSDEYQKAVEKCKRKLRGLIAEKHCAPIILRLAWHSAGTYDVNTKTGGPFGTIRHPDELAHEANNGLDIAVRL 80 (250)
Q Consensus 1 ~~~~cp~~~~~~~~~v~~~~~~~~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~ 80 (250)
|.+.||.+-+.|+++++.++++|.+++.+++++|.+|||+||||+|||..+++|||||||++++|+++++|.||+.++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~~E~~~~~N~gL~~~~~~ 81 (251)
T PLN02879 2 VKKSYPEVKEEYKKAVQRCKRKLRGLIAEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHPQELAHDANNGLDIAVRL 81 (251)
T ss_pred CcccCCCccHHHHHHHHHHHHHHHHHHhCCCchhHhHHHHHhhhccccCCCCCCCCCeeecChhhccCCCcCChHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred HHHHHhhCCCCcHHHHHHhhhhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhhcCCChhhhhHhhc
Q 025588 81 LEPIEQQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVFGHMGLSDKEIVVLSG 160 (250)
Q Consensus 81 i~~ik~~~~~vS~ADiialaa~~av~~~GGP~~~~~~GR~D~~~~~~~~~lP~~~~~~~~l~~~F~~~Gl~~~e~VaL~G 160 (250)
|++||+++++|||||||+||+++||+.+|||.|+|++||+|+..++++++||.|+.+++++++.|+++||+++|||||+|
T Consensus 82 i~~iK~~~~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsG 161 (251)
T PLN02879 82 LDPIKELFPILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPEGRLPQATKGVDHLRDVFGRMGLNDKDIVALSG 161 (251)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHcCCCHHHHeeeec
Confidence 99999999999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCCCccChHHHHHHhccccCCccccchhhhcccCCCcHHHHHHhhcChHHHHHHHHHHHHH
Q 025588 161 GHTLGRCHKERSGFEGPWTNNPLIFDNSYFKELLSGEKEGLLQLPSDKALLEDPVFRPLVEKYAADEDAVFADYAEAHLK 240 (250)
Q Consensus 161 aHtiG~~~~~~~~~~g~~~~tp~~fDN~Yy~~ll~~~~~gll~l~sD~~L~~d~~t~~~v~~yA~~~~~F~~~Fa~am~K 240 (250)
|||||++||.++++.|+|+.||.+|||+||++|+.++.+|+++|+||++|+.|++|+++|++||.||+.|+++|+.||+|
T Consensus 162 aHTiG~ah~~r~g~~g~~d~tp~~FDN~Yy~~ll~~~~~gll~L~SD~aL~~D~~t~~~V~~~A~d~~~F~~~Fa~Am~K 241 (251)
T PLN02879 162 GHTLGRCHKERSGFEGAWTPNPLIFDNSYFKEILSGEKEGLLQLPTDKALLDDPLFLPFVEKYAADEDAFFEDYTEAHLK 241 (251)
T ss_pred cccccccccccccCCCCCCCCccceeHHHHHHHHcCCcCCCccchhhHHHhcCCcHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999877799999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCC
Q 025588 241 LSELGFADAE 250 (250)
Q Consensus 241 m~~~gv~~~~ 250 (250)
|+++|+.++|
T Consensus 242 L~~lg~~~~~ 251 (251)
T PLN02879 242 LSELGFADKE 251 (251)
T ss_pred HHccCCCCCC
Confidence 9999999986
No 2
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=1.2e-76 Score=522.01 Aligned_cols=249 Identities=80% Similarity=1.329 Sum_probs=241.3
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCchhHHHHHhhccccccccCCCCCCCCCcccCcccccccccCchHHHHHH
Q 025588 1 MGKCYPKVSDEYQKAVEKCKRKLRGLIAEKHCAPIILRLAWHSAGTYDVNTKTGGPFGTIRHPDELAHEANNGLDIAVRL 80 (250)
Q Consensus 1 ~~~~cp~~~~~~~~~v~~~~~~~~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~ 80 (250)
|.+.||.+.+.|++++++++++|++++.+++++|.||||+||||++||.....|||||||++++|+++++|.+|.+++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~~~E~~~~~N~gl~~~~~~ 80 (250)
T PLN02364 1 MTKNYPTVSEDYKKAVEKCRRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDAEQAHGANSGIHIALRL 80 (250)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHccccCcCcCCCCCCCCccccccccccCCCccCHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred HHHHHhhCCCCcHHHHHHhhhhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhh-cCCChhhhhHhh
Q 025588 81 LEPIEQQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVFGH-MGLSDKEIVVLS 159 (250)
Q Consensus 81 i~~ik~~~~~vS~ADiialaa~~av~~~GGP~~~~~~GR~D~~~~~~~~~lP~~~~~~~~l~~~F~~-~Gl~~~e~VaL~ 159 (250)
|+.||+++++|||||||+||+++||+.+|||.|+|++||+|++++.+.+.||.|..++++|++.|+. +||+++|||||+
T Consensus 81 i~~ik~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~d~VaLs 160 (250)
T PLN02364 81 LDPIREQFPTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPEGRLPDATKGCDHLRDVFAKQMGLSDKDIVALS 160 (250)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccccCCCCCCCcCHHHHHHHHHHhcCCCHHHheeee
Confidence 9999999999999999999999999999999999999999999999888999999999999999996 699999999999
Q ss_pred ccccccccccCCCCCCCCCCCCCCccChHHHHHHhccccCCccccchhhhcccCCCcHHHHHHhhcChHHHHHHHHHHHH
Q 025588 160 GGHTLGRCHKERSGFEGPWTNNPLIFDNSYFKELLSGEKEGLLQLPSDKALLEDPVFRPLVEKYAADEDAVFADYAEAHL 239 (250)
Q Consensus 160 GaHtiG~~~~~~~~~~g~~~~tp~~fDN~Yy~~ll~~~~~gll~l~sD~~L~~d~~t~~~v~~yA~~~~~F~~~Fa~am~ 239 (250)
||||||++||.+.++.|+|+.||.+|||+||++|+.++++|+++|+||++|+.|++|+.+|+.||.|++.|+++|++||+
T Consensus 161 GaHTiG~~hc~r~~~~g~~~~tp~~fDn~Yy~~ll~~~~~gll~l~sD~~L~~d~~T~~~v~~~a~~~~~F~~~Fa~Am~ 240 (250)
T PLN02364 161 GAHTLGRCHKDRSGFEGAWTSNPLIFDNSYFKELLSGEKEGLLQLVSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHM 240 (250)
T ss_pred cceeeccccCCCCCCCCCCCCCCCccchHHHHHHhcCCcCCCccccchHHHccCchHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 99999999999888989999999999999999999987679999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCC
Q 025588 240 KLSELGFADA 249 (250)
Q Consensus 240 Km~~~gv~~~ 249 (250)
||+++|+.++
T Consensus 241 Km~~lg~~~~ 250 (250)
T PLN02364 241 KLSELGFADA 250 (250)
T ss_pred HHHccCCCCC
Confidence 9999999764
No 3
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=1.3e-76 Score=528.90 Aligned_cols=245 Identities=69% Similarity=1.136 Sum_probs=238.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhcCCchhHHHHHhhccccccccCCCCCCCCCcccCcccccccccCchHHHHHHHHHH
Q 025588 5 YPKVSDEYQKAVEKCKRKLRGLIAEKHCAPIILRLAWHSAGTYDVNTKTGGPFGTIRHPDELAHEANNGLDIAVRLLEPI 84 (250)
Q Consensus 5 cp~~~~~~~~~v~~~~~~~~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~i~~i 84 (250)
.|.+...|-++|+.+|++|+++++++.++|.||||+||||++||.+++.|||||||++++|+++++|.||++++++|++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~~E~~~~~N~gL~~g~~vid~i 82 (289)
T PLN02608 3 APVVDAEYLKEIEKARRDLRALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNEEEYSHGANNGLKIAIDLCEPV 82 (289)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecccccCCccccchHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred HhhCCCCcHHHHHHhhhhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhhcCCChhhhhHhhccccc
Q 025588 85 EQQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVFGHMGLSDKEIVVLSGGHTL 164 (250)
Q Consensus 85 k~~~~~vS~ADiialaa~~av~~~GGP~~~~~~GR~D~~~~~~~~~lP~~~~~~~~l~~~F~~~Gl~~~e~VaL~GaHti 164 (250)
|+++|+|||||||+||+++||+.+|||.|+|++||+|+++++++++||.|+.+++++++.|+++||+++|||||+|||||
T Consensus 83 K~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsGAHTi 162 (289)
T PLN02608 83 KAKHPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPEEGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSGGHTL 162 (289)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCccCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhcccccc
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCCCCCCccChHHHHHHhccccCCccccchhhhcccCCCcHHHHHHhhcChHHHHHHHHHHHHHHHhC
Q 025588 165 GRCHKERSGFEGPWTNNPLIFDNSYFKELLSGEKEGLLQLPSDKALLEDPVFRPLVEKYAADEDAVFADYAEAHLKLSEL 244 (250)
Q Consensus 165 G~~~~~~~~~~g~~~~tp~~fDN~Yy~~ll~~~~~gll~l~sD~~L~~d~~t~~~v~~yA~~~~~F~~~Fa~am~Km~~~ 244 (250)
|++||.+.+|.|+|+.||.+|||+||++|+.++.+|+++|+||++|++|++|+.+|+.||.||+.|+++|++||+||+++
T Consensus 163 G~ahc~r~g~~g~~~~Tp~~FDN~Yy~~ll~~~~~gll~L~SD~~L~~d~~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~l 242 (289)
T PLN02608 163 GRAHPERSGFDGPWTKEPLKFDNSYFVELLKGESEGLLKLPTDKALLEDPEFRPYVELYAKDEDAFFRDYAESHKKLSEL 242 (289)
T ss_pred ccccccCCCCCCCCCCCCCccChHHHHHHHcCCcCCccccccCHhhhcChhHHHHHHHHhhCHHHHHHHHHHHHHHHHcC
Confidence 99999988888999999999999999999998667998889999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 025588 245 GFADA 249 (250)
Q Consensus 245 gv~~~ 249 (250)
||+|.
T Consensus 243 gvltg 247 (289)
T PLN02608 243 GFTPP 247 (289)
T ss_pred CCCCC
Confidence 99986
No 4
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=7.9e-72 Score=493.01 Aligned_cols=243 Identities=67% Similarity=1.121 Sum_probs=221.8
Q ss_pred CChhHHH-HHHHHHHHHHHHHHHhcCCchhHHHHHhhccccccccCCCCCCCCCcccCcccccccccCchHHHHHHHHHH
Q 025588 6 PKVSDEY-QKAVEKCKRKLRGLIAEKHCAPIILRLAWHSAGTYDVNTKTGGPFGTIRHPDELAHEANNGLDIAVRLLEPI 84 (250)
Q Consensus 6 p~~~~~~-~~~v~~~~~~~~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~i~~i 84 (250)
|.|..-| ...+..+++.|+++++++.++|.+|||+||||++||++.+.||+||++++.+|+++++|.+|.+++++|++|
T Consensus 2 ~~~~~~~~~~~~~~V~~~v~~~~~~~~~~~~llRl~FHDc~~~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~i 81 (253)
T cd00691 2 PVVSAAYAAKDLEAARNDIAKLIDDKNCAPILVRLAWHDSGTYDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPI 81 (253)
T ss_pred CcccccccHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccCCCCCCccccchhhcCCccccchHHHHHHHHHH
Confidence 4455444 344555555666566699999999999999999999999999999999998999999999998899999999
Q ss_pred HhhCCCCcHHHHHHhhhhhhhhhcCCCCCCCCCCCCCCCCCC---CCCCCCCCCCChHHHHHHHhhcCCChhhhhHhhcc
Q 025588 85 EQQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPP---PEGRLPNATKGSDHLRDVFGHMGLSDKEIVVLSGG 161 (250)
Q Consensus 85 k~~~~~vS~ADiialaa~~av~~~GGP~~~~~~GR~D~~~~~---~~~~lP~~~~~~~~l~~~F~~~Gl~~~e~VaL~Ga 161 (250)
|+++|+|||||||+||+++||+.+|||.|+|++||+|+.++. +.++||.|..+++++++.|+++||+++|||||+||
T Consensus 82 K~~~~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGa 161 (253)
T cd00691 82 KKKYPDISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGA 161 (253)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhccc
Confidence 999999999999999999999999999999999999999986 57789999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCCCCCCCccChHHHHHHhcccc----CCccccchhhhcccCCCcHHHHHHhhcChHHHHHHHHHH
Q 025588 162 HTLGRCHKERSGFEGPWTNNPLIFDNSYFKELLSGEK----EGLLQLPSDKALLEDPVFRPLVEKYAADEDAVFADYAEA 237 (250)
Q Consensus 162 HtiG~~~~~~~~~~g~~~~tp~~fDN~Yy~~ll~~~~----~gll~l~sD~~L~~d~~t~~~v~~yA~~~~~F~~~Fa~a 237 (250)
||||++||.++++.|+|+.||.+|||+||++|+.+.+ ++++.|+||++|+.|++|+.+|+.||.|+++|+++|++|
T Consensus 162 HTiG~a~c~~~~~~g~~~~tp~~FDn~Yy~~ll~~~g~~~~~~~~~L~sD~~L~~d~~t~~~v~~~a~~~~~F~~~Fa~A 241 (253)
T cd00691 162 HTLGRCHKERSGYDGPWTKNPLKFDNSYFKELLEEDWKLPTPGLLMLPTDKALLEDPKFRPYVELYAKDQDAFFKDYAEA 241 (253)
T ss_pred ceeecccccCCCCCCCCCCCCCcccHHHHHHHhcCCCccCcCcceechhhHHHHcCccHHHHHHHHhhCHHHHHHHHHHH
Confidence 9999999988888889999999999999999999943 335566799999999999999999999999999999999
Q ss_pred HHHHHhCCCCC
Q 025588 238 HLKLSELGFAD 248 (250)
Q Consensus 238 m~Km~~~gv~~ 248 (250)
|+||+++||+.
T Consensus 242 m~Km~~l~v~~ 252 (253)
T cd00691 242 HKKLSELGVPF 252 (253)
T ss_pred HHHHHhcCCCC
Confidence 99999999975
No 5
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=3.3e-69 Score=487.62 Aligned_cols=230 Identities=26% Similarity=0.381 Sum_probs=209.0
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhcCCchhHHHHHhhccccccccCCCCCCCCCcccCc---ccccccccCchHHHH
Q 025588 2 GKCYPKVSDEYQKAVEKCKRKLRGLIAEKHCAPIILRLAWHSAGTYDVNTKTGGPFGTIRHP---DELAHEANNGLDIAV 78 (250)
Q Consensus 2 ~~~cp~~~~~~~~~v~~~~~~~~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgsi~~~---~E~~~~~N~gl~~~~ 78 (250)
.++||++|+||+++|+++ +.+++..+|++|||+|||||+ +||||||++. .|++.++|.+| ++|
T Consensus 31 ~~sCP~aE~iV~~~v~~~------~~~d~~~aa~llRL~FHDCfv-------~GCDaSvLl~~~~~Ek~a~~N~~l-~Gf 96 (324)
T PLN03030 31 STTCPQAESIVRKTVQSH------FQSNPAIAPGLLRMHFHDCFV-------RGCDASILIDGSNTEKTALPNLLL-RGY 96 (324)
T ss_pred hCcCCCHHHHHHHHHHHH------HhhCcccchhhhhhhhhhhee-------cCCceEEeeCCCcccccCCCCcCc-chH
Confidence 579999999999999997 889999999999999999997 8999999874 69999999988 589
Q ss_pred HHHHHHHhh----CC-CCcHHHHHHhhhhhhhhhcCCCCCCCCCCCCCCCCCC--CCCCCCCCCCChHHHHHHHhhcCCC
Q 025588 79 RLLEPIEQQ----FP-ILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPP--PEGRLPNATKGSDHLRDVFGHMGLS 151 (250)
Q Consensus 79 ~~i~~ik~~----~~-~vS~ADiialaa~~av~~~GGP~~~~~~GR~D~~~~~--~~~~lP~~~~~~~~l~~~F~~~Gl~ 151 (250)
++|+.||.+ || +|||||||+||+|+||.++|||.|+|++||+|+++|. ...+||.|+.+++++++.|+++||+
T Consensus 97 ~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~~LP~p~~~~~~l~~~F~~~Gl~ 176 (324)
T PLN03030 97 DVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDASNLPGFTDSIDVQKQKFAAKGLN 176 (324)
T ss_pred HHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccccCCcCCCCCHHHHHHHHHHcCCC
Confidence 999999975 88 8999999999999999999999999999999998873 3458999999999999999999999
Q ss_pred hhhhhHhhccccccccccCC-----CCCCC-------------------------C-------CCCCCCccChHHHHHHh
Q 025588 152 DKEIVVLSGGHTLGRCHKER-----SGFEG-------------------------P-------WTNNPLIFDNSYFKELL 194 (250)
Q Consensus 152 ~~e~VaL~GaHtiG~~~~~~-----~~~~g-------------------------~-------~~~tp~~fDN~Yy~~ll 194 (250)
.+|||+|+||||||++||.. ++|.+ . +..||.+|||+||++|+
T Consensus 177 ~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nll 256 (324)
T PLN03030 177 TQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFSNLK 256 (324)
T ss_pred HHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHHHHH
Confidence 99999999999999999962 22211 0 23589999999999999
Q ss_pred ccccCCccccchhhhcccCCCcHHHHHHhhcCh----HHHHHHHHHHHHHHHhCCCCCC
Q 025588 195 SGEKEGLLQLPSDKALLEDPVFRPLVEKYAADE----DAVFADYAEAHLKLSELGFADA 249 (250)
Q Consensus 195 ~~~~~gll~l~sD~~L~~d~~t~~~v~~yA~~~----~~F~~~Fa~am~Km~~~gv~~~ 249 (250)
.+ +|+|. ||++|++|++|+++|++||.|+ +.|+++|++||+||+++||+|.
T Consensus 257 ~~--rGlL~--SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG 311 (324)
T PLN03030 257 NG--RGILE--SDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTG 311 (324)
T ss_pred hc--CCCcC--CchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCC
Confidence 99 79876 9999999999999999999875 5999999999999999999986
No 6
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=3.1e-68 Score=480.02 Aligned_cols=230 Identities=35% Similarity=0.563 Sum_probs=209.9
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhcCCchhHHHHHhhccccccccCCCCCCCCCcccC------cccccccccCchH
Q 025588 2 GKCYPKVSDEYQKAVEKCKRKLRGLIAEKHCAPIILRLAWHSAGTYDVNTKTGGPFGTIRH------PDELAHEANNGLD 75 (250)
Q Consensus 2 ~~~cp~~~~~~~~~v~~~~~~~~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgsi~~------~~E~~~~~N~gl~ 75 (250)
.++||+||++|+++|+++ +..+++++|++|||+||||++ +||||||++ .+|+++++|.+|
T Consensus 8 ~~sCP~~e~iV~~~v~~~------~~~~~~~a~~~lRl~FHDc~v-------~GcDaSill~~~~~~~~E~~~~~N~~l- 73 (298)
T cd00693 8 SKSCPNAESIVRSVVRAA------VKADPRLAAALLRLHFHDCFV-------RGCDASVLLDSTANNTSEKDAPPNLSL- 73 (298)
T ss_pred cCCCCChHHHHHHHHHHH------HHhCCCcCchhhhhhhHhhhc-------cCcceeEEecCCCCCchhccCCCCCCc-
Confidence 579999999999999996 889999999999999999996 899999986 369999999998
Q ss_pred HHHHHHHHHHhh----CC-CCcHHHHHHhhhhhhhhhcCCCCCCCCCCCCCCCCCCC--CCCCCCCCCChHHHHHHHhhc
Q 025588 76 IAVRLLEPIEQQ----FP-ILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPP--EGRLPNATKGSDHLRDVFGHM 148 (250)
Q Consensus 76 ~~~~~i~~ik~~----~~-~vS~ADiialaa~~av~~~GGP~~~~~~GR~D~~~~~~--~~~lP~~~~~~~~l~~~F~~~ 148 (250)
+++++|+.||.+ || +|||||||+||+++||+.+|||.|+|++||+|+..+.+ .+.||.|+.+++++++.|+++
T Consensus 74 ~g~~~i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~ 153 (298)
T cd00693 74 RGFDVIDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDVGNLPSPFFSVSQLISLFASK 153 (298)
T ss_pred chhHHHHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccccCCCCcccCHHHHHHHHHHc
Confidence 589999999975 77 89999999999999999999999999999999987643 368999999999999999999
Q ss_pred CCChhhhhHhhccccccccccC----C-CCCCC--------------------CC----------C-CCCCccChHHHHH
Q 025588 149 GLSDKEIVVLSGGHTLGRCHKE----R-SGFEG--------------------PW----------T-NNPLIFDNSYFKE 192 (250)
Q Consensus 149 Gl~~~e~VaL~GaHtiG~~~~~----~-~~~~g--------------------~~----------~-~tp~~fDN~Yy~~ 192 (250)
||+++|||||+||||||++||. | ++|.| |+ + .||.+|||+||++
T Consensus 154 G~~~~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~ 233 (298)
T cd00693 154 GLTVTDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKN 233 (298)
T ss_pred CCCHHHheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHHH
Confidence 9999999999999999999995 2 33322 22 2 7899999999999
Q ss_pred HhccccCCccccchhhhcccCCCcHHHHHHhhcChHHHHHHHHHHHHHHHhCCCCCC
Q 025588 193 LLSGEKEGLLQLPSDKALLEDPVFRPLVEKYAADEDAVFADYAEAHLKLSELGFADA 249 (250)
Q Consensus 193 ll~~~~~gll~l~sD~~L~~d~~t~~~v~~yA~~~~~F~~~Fa~am~Km~~~gv~~~ 249 (250)
|+.+ +|+| +||++|+.|++|+++|++||.||+.|+++|+.||+||+++||+|.
T Consensus 234 l~~~--~glL--~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg 286 (298)
T cd00693 234 LLAG--RGLL--TSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTG 286 (298)
T ss_pred HHhc--ccCc--cCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccC
Confidence 9998 7876 499999999999999999999999999999999999999999985
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=8.8e-63 Score=447.26 Aligned_cols=229 Identities=33% Similarity=0.480 Sum_probs=201.0
Q ss_pred HHHHHHHH-hcCC---chhHHHHHhhcccccccc-----CCCCCCCCCcccCc--ccccccccCchHHHHHHHHHHHhhC
Q 025588 20 KRKLRGLI-AEKH---CAPIILRLAWHSAGTYDV-----NTKTGGPFGTIRHP--DELAHEANNGLDIAVRLLEPIEQQF 88 (250)
Q Consensus 20 ~~~~~~~~-~~~~---~a~~~lRl~FHDc~~~d~-----s~~~gG~dgsi~~~--~E~~~~~N~gl~~~~~~i~~ik~~~ 88 (250)
+++|.+.+ .+.. .|+++|||+||||++||. ..+.|||||||++. .|++++.|.||+.+++.|.++++++
T Consensus 21 ~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~~E~~~~~N~gL~~vvd~lk~~~e~~ 100 (328)
T cd00692 21 LDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDDIETAFHANIGLDEIVEALRPFHQKH 100 (328)
T ss_pred HHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCcccccCCCCCCHHHHHHHHHHHHHhc
Confidence 34444444 3444 567799999999999994 56789999999864 5999999999998888888877776
Q ss_pred CCCcHHHHHHhhhhhhhhh-cCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhhcCCChhhhhHhhcccccccc
Q 025588 89 PILSYADFYQLAGVVAVEV-TGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVFGHMGLSDKEIVVLSGGHTLGRC 167 (250)
Q Consensus 89 ~~vS~ADiialaa~~av~~-~GGP~~~~~~GR~D~~~~~~~~~lP~~~~~~~~l~~~F~~~Gl~~~e~VaL~GaHtiG~~ 167 (250)
+ |||||||+|||++||+. .|||.|+|++||+|++.+.+.++||.|+.++++|++.|+++||+++|||||+||||||++
T Consensus 101 c-VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~g~LP~p~~sv~~l~~~F~~~Gf~~~E~VaLsGAHTiG~a 179 (328)
T cd00692 101 N-VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPDGLVPEPFDSVDKILARFADAGFSPDELVALLAAHSVAAQ 179 (328)
T ss_pred C-cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHcCCCHHHHhhhccccccccc
Confidence 5 99999999999999995 599999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCC-CCCCCCCccChHHHHHHhc-ccc---------------CCccccchhhhcccCCCcHHHHHHhhcChHHH
Q 025588 168 HKERSGFEG-PWTNNPLIFDNSYFKELLS-GEK---------------EGLLQLPSDKALLEDPVFRPLVEKYAADEDAV 230 (250)
Q Consensus 168 ~~~~~~~~g-~~~~tp~~fDN~Yy~~ll~-~~~---------------~gll~l~sD~~L~~d~~t~~~v~~yA~~~~~F 230 (250)
|...+.++| +|+.||.+|||+||++++. +.. +|+++|+||++|+.|++|+.+|++||.||+.|
T Consensus 180 ~~~Dps~~g~p~D~TP~~FDn~Yf~~ll~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq~~f 259 (328)
T cd00692 180 DFVDPSIAGTPFDSTPGVFDTQFFIETLLKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQAKM 259 (328)
T ss_pred CCCCCCCCCCCCCCCcchhcHHHHHHHHHcCCCCCCccccccccccCccccccccchHHHhcCCcHHHHHHHHhcCHHHH
Confidence 975544555 8999999999999999884 321 25677899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCC
Q 025588 231 FADYAEAHLKLSELGFADA 249 (250)
Q Consensus 231 ~~~Fa~am~Km~~~gv~~~ 249 (250)
+++|+.||+||+++||+..
T Consensus 260 ~~~Fa~Am~KLs~lgv~~~ 278 (328)
T cd00692 260 NAAFAAAMLKLSLLGQDNI 278 (328)
T ss_pred HHHHHHHHHHHHcCCCCcc
Confidence 9999999999999999753
No 8
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=2e-61 Score=445.03 Aligned_cols=235 Identities=37% Similarity=0.640 Sum_probs=213.5
Q ss_pred HHHHHHHHHHHHHHhcC---------CchhHHHHHhhccccccccCCCCCCCC-CcccCcccccccccCchHHHHHHHHH
Q 025588 14 KAVEKCKRKLRGLIAEK---------HCAPIILRLAWHSAGTYDVNTKTGGPF-GTIRHPDELAHEANNGLDIAVRLLEP 83 (250)
Q Consensus 14 ~~v~~~~~~~~~~~~~~---------~~a~~~lRl~FHDc~~~d~s~~~gG~d-gsi~~~~E~~~~~N~gl~~~~~~i~~ 83 (250)
-.++++|++|+++++++ .++|.+|||+||+++|||.++++||++ |+|+|++|++++.|.||.+++++|++
T Consensus 42 ~d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~pe~~~~~N~gL~~a~~~L~p 121 (409)
T cd00649 42 LDLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFAPLNSWPDNVNLDKARRLLWP 121 (409)
T ss_pred ccHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccccccCcHhhhhHHHHHHHHHH
Confidence 34678999999999864 699999999999999999999999997 79999999999999999999999999
Q ss_pred HHhhCC-CCcHHHHHHhhhhhhhhhcCCCCCCCCCCCCCCCCCC------------------------------------
Q 025588 84 IEQQFP-ILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPP------------------------------------ 126 (250)
Q Consensus 84 ik~~~~-~vS~ADiialaa~~av~~~GGP~~~~~~GR~D~~~~~------------------------------------ 126 (250)
||+++| .||+||+|+||+++||+.+|||.|+|.+||.|...+.
T Consensus 122 ik~k~~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a~~mgliy 201 (409)
T cd00649 122 IKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPLAAVQMGLIY 201 (409)
T ss_pred HHHHcCCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccchhhhhccccc
Confidence 999998 7999999999999999999999999999999996532
Q ss_pred --CCC--CCCCCCCChHHHHHHHhhcCCChhhhhHh-hccccccccccCC------------------------------
Q 025588 127 --PEG--RLPNATKGSDHLRDVFGHMGLSDKEIVVL-SGGHTLGRCHKER------------------------------ 171 (250)
Q Consensus 127 --~~~--~lP~~~~~~~~l~~~F~~~Gl~~~e~VaL-~GaHtiG~~~~~~------------------------------ 171 (250)
|++ .||+|..++.+|++.|.+|||+.+||||| +||||||++||..
T Consensus 202 v~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg~dP~~~~~~~~gLgw~~~Cp~g~g 281 (409)
T cd00649 202 VNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHVGPEPEAAPIEQQGLGWKNSYGTGKG 281 (409)
T ss_pred cCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccCCCCCCcCHHHHHhhcccccCCCCCC
Confidence 234 68999999999999999999999999999 5999999999942
Q ss_pred -----CCCCCCCCCCCCccChHHHHHHhccc--------------------------------cCCccccchhhhcccCC
Q 025588 172 -----SGFEGPWTNNPLIFDNSYFKELLSGE--------------------------------KEGLLQLPSDKALLEDP 214 (250)
Q Consensus 172 -----~~~~g~~~~tp~~fDN~Yy~~ll~~~--------------------------------~~gll~l~sD~~L~~d~ 214 (250)
++++|+|+.+|.+|||+||++|+..+ +.++.+|+||++|+.|+
T Consensus 282 ~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~~~~~~gmL~SD~aL~~Dp 361 (409)
T cd00649 282 KDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPDAHDPSKKHAPMMLTTDLALRFDP 361 (409)
T ss_pred CCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCCccccccccCcccchhhHhhhcCc
Confidence 35678899999999999999999832 12567778999999999
Q ss_pred CcHHHHHHhhcChHHHHHHHHHHHHHH--HhCCCCC
Q 025588 215 VFRPLVEKYAADEDAVFADYAEAHLKL--SELGFAD 248 (250)
Q Consensus 215 ~t~~~v~~yA~~~~~F~~~Fa~am~Km--~~~gv~~ 248 (250)
+++++|++||.|++.|+++|++||.|| +.+|+++
T Consensus 362 ~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~ 397 (409)
T cd00649 362 EYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKS 397 (409)
T ss_pred cHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchh
Confidence 999999999999999999999999999 5777765
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=5.8e-59 Score=412.44 Aligned_cols=218 Identities=50% Similarity=0.789 Sum_probs=200.5
Q ss_pred HHhcCCchhHHHHHhhccccccccCC-CCCCCCCcccCcccccccccCchHHHHHHHHHHHhhCC---CCcHHHHHHhhh
Q 025588 26 LIAEKHCAPIILRLAWHSAGTYDVNT-KTGGPFGTIRHPDELAHEANNGLDIAVRLLEPIEQQFP---ILSYADFYQLAG 101 (250)
Q Consensus 26 ~~~~~~~a~~~lRl~FHDc~~~d~s~-~~gG~dgsi~~~~E~~~~~N~gl~~~~~~i~~ik~~~~---~vS~ADiialaa 101 (250)
+.+++.+++++|||+||||++|+.++ ..|||||||++.+|+++++|.+|.+++++|++||.+++ +|||||||++|+
T Consensus 11 ~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~~e~~~~~N~~l~~~~~~l~~ik~~~~~~~~vS~ADlialAa 90 (255)
T cd00314 11 ITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFEPELDRPENGGLDKALRALEPIKSAYDGGNPVSRADLIALAG 90 (255)
T ss_pred HHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEeccccccCcccccHHHHHHHHHHHHHHcCCCCcccHHHHHHHHH
Confidence 34578999999999999999999887 67999999999999999999999889999999999985 799999999999
Q ss_pred hhhhhhc--CCCCCCCCCCCCCCC-----CCCCCCCCCCCCCChHHHHHHHhhcCCChhhhhHhh-ccccc-cccccCCC
Q 025588 102 VVAVEVT--GGPEIPFHPGRPDKS-----DPPPEGRLPNATKGSDHLRDVFGHMGLSDKEIVVLS-GGHTL-GRCHKERS 172 (250)
Q Consensus 102 ~~av~~~--GGP~~~~~~GR~D~~-----~~~~~~~lP~~~~~~~~l~~~F~~~Gl~~~e~VaL~-GaHti-G~~~~~~~ 172 (250)
++||+.+ |||.|+|++||+|+. .+.|.+.+|.+..+++++++.|.++||+++|||||+ ||||| |++||...
T Consensus 91 ~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VAL~~GaHti~G~~~~~~~ 170 (255)
T cd00314 91 AVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVALSAGAHTLGGKNHGDLL 170 (255)
T ss_pred HHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHhhccCCeeccCcccCCCC
Confidence 9999999 999999999999998 566778899999999999999999999999999999 99999 99999765
Q ss_pred CCC--CCCCCCCCccChHHHHHHhcccc------------CCccccchhhhcccCCCcHHHHHHhhcChHHHHHHHHHHH
Q 025588 173 GFE--GPWTNNPLIFDNSYFKELLSGEK------------EGLLQLPSDKALLEDPVFRPLVEKYAADEDAVFADYAEAH 238 (250)
Q Consensus 173 ~~~--g~~~~tp~~fDN~Yy~~ll~~~~------------~gll~l~sD~~L~~d~~t~~~v~~yA~~~~~F~~~Fa~am 238 (250)
+.. ++|+.||.+|||+||++|+.+++ +++..|+||+.|+.|++|+.+|++||.|++.|+++|++||
T Consensus 171 ~~~~~~~~~~tp~~fDN~yy~~l~~~~~~~~~~~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~~f~~~Fa~a~ 250 (255)
T cd00314 171 NYEGSGLWTSTPFTFDNAYFKNLLDMNWEWRVGSPDPDGVKGPGLLPSDYALLSDSETRALVERYASDQEKFFEDFAKAW 250 (255)
T ss_pred CcccCCCCCCCCCccchHHHHHHhcCCcccccCCccCCCcccCCCchhhHHHhcCHhHHHHHHHHHhCHHHHHHHHHHHH
Confidence 543 67899999999999999999852 2335567999999999999999999999999999999999
Q ss_pred HHHHh
Q 025588 239 LKLSE 243 (250)
Q Consensus 239 ~Km~~ 243 (250)
.||++
T Consensus 251 ~Km~~ 255 (255)
T cd00314 251 IKMVN 255 (255)
T ss_pred HHHcC
Confidence 99974
No 10
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=5.2e-57 Score=439.27 Aligned_cols=228 Identities=37% Similarity=0.628 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHhcC---------CchhHHHHHhhccccccccCCCCCCCC-CcccCcccccccccCchHHHHHHHHHHH
Q 025588 16 VEKCKRKLRGLIAEK---------HCAPIILRLAWHSAGTYDVNTKTGGPF-GTIRHPDELAHEANNGLDIAVRLLEPIE 85 (250)
Q Consensus 16 v~~~~~~~~~~~~~~---------~~a~~~lRl~FHDc~~~d~s~~~gG~d-gsi~~~~E~~~~~N~gl~~~~~~i~~ik 85 (250)
++.+|++|+++++++ +++|.+|||+||+++|||.+++.||++ |+|+|++|++|+.|.+|++++++|++||
T Consensus 54 ~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~P~~sw~~N~~Ldka~~lL~pIk 133 (716)
T TIGR00198 54 LAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFAPLNSWPDNVNLDKARRLLWPIK 133 (716)
T ss_pred HHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecccccCchhhhhHHHHHHHHHHHH
Confidence 445899999999874 699999999999999999999999996 7999999999999999999999999999
Q ss_pred hhCC-CCcHHHHHHhhhhhhhhhcCCCCCCCCCCCCCCCCCC-------------------------------------C
Q 025588 86 QQFP-ILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPP-------------------------------------P 127 (250)
Q Consensus 86 ~~~~-~vS~ADiialaa~~av~~~GGP~~~~~~GR~D~~~~~-------------------------------------~ 127 (250)
++|| +|||||||+|||++||+.+|||.|+|.+||+|+..+. +
T Consensus 134 ~kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a~~~~Gliyvnp 213 (716)
T TIGR00198 134 KKYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPLAATEMGLIYVNP 213 (716)
T ss_pred HHCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccchhhhccccccCc
Confidence 9998 7999999999999999999999999999999995321 1
Q ss_pred CC--CCCCCCCChHHHHHHHhhcCCChhhhhHhh-ccccccccccCC---------------------------------
Q 025588 128 EG--RLPNATKGSDHLRDVFGHMGLSDKEIVVLS-GGHTLGRCHKER--------------------------------- 171 (250)
Q Consensus 128 ~~--~lP~~~~~~~~l~~~F~~~Gl~~~e~VaL~-GaHtiG~~~~~~--------------------------------- 171 (250)
++ .+|.|..++++|++.|.+||||.+|||||+ ||||||++||..
T Consensus 214 eg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rlg~dP~~~~~~~~gLg~~c~~~~g~g~dt 293 (716)
T TIGR00198 214 EGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELIGPDPEGAPIEEQGLGWHNQYGKGVGRDT 293 (716)
T ss_pred ccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccCCCCCCcCHHHHHHhcccCCCCCCCCCCc
Confidence 22 689999999999999999999999999995 999999999951
Q ss_pred --CCCCCCCCCCCCccChHHHHHHhcccc------------------------------CCccccchhhhcccCCCcHHH
Q 025588 172 --SGFEGPWTNNPLIFDNSYFKELLSGEK------------------------------EGLLQLPSDKALLEDPVFRPL 219 (250)
Q Consensus 172 --~~~~g~~~~tp~~fDN~Yy~~ll~~~~------------------------------~gll~l~sD~~L~~d~~t~~~ 219 (250)
++++|+|+.||.+|||+||++|+.+++ ..+.+|.||++|..|++++++
T Consensus 294 ~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~~~~~~~~mL~SDlaL~~Dp~~r~i 373 (716)
T TIGR00198 294 MTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVEDPNKKHNPIMLDADLALRFDPEFRKI 373 (716)
T ss_pred ccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccccccccccccccccccCccchhHHhccCccHHHH
Confidence 345688999999999999999998521 124567899999999999999
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHh
Q 025588 220 VEKYAADEDAVFADYAEAHLKLSE 243 (250)
Q Consensus 220 v~~yA~~~~~F~~~Fa~am~Km~~ 243 (250)
|++||.|++.|+++|++||.||++
T Consensus 374 Ve~yA~d~~~F~~dFA~Aw~KL~~ 397 (716)
T TIGR00198 374 SRRFLREPDYFAEAFAKAWFKLTH 397 (716)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999995
No 11
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=9.2e-59 Score=405.47 Aligned_cols=198 Identities=43% Similarity=0.720 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHhhccccccccCCCCCCCCCcccC-cccccccccCchHHHHHHHHHHHhh---
Q 025588 12 YQKAVEKCKRKLRGLIAEKHCAPIILRLAWHSAGTYDVNTKTGGPFGTIRH-PDELAHEANNGLDIAVRLLEPIEQQ--- 87 (250)
Q Consensus 12 ~~~~v~~~~~~~~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgsi~~-~~E~~~~~N~gl~~~~~~i~~ik~~--- 87 (250)
|+++|+++ +..+++++|+||||+||||++| |||||||++ .+|+++++|.||.+++++|+.||++
T Consensus 1 Vr~~v~~~------~~~~~~~~~~~lRl~FHDc~~~------~GcDgSil~~~~e~~~~~N~gl~~~~~~i~~ik~~~~~ 68 (230)
T PF00141_consen 1 VRSDVRAA------FKKDPTLAPGLLRLAFHDCFVY------GGCDGSILLFSAEKDAPPNRGLRDGFDVIDPIKAKLEA 68 (230)
T ss_dssp HHHHHHHH------HHHHTTSHHHHHHHHHHHHTTH------TSSSSGGGGSTTGGGSGGGTTHHHHHHHHHHHHHHHCH
T ss_pred CHHHHHHH------HHHCcCccHHHHHHHccccccc------cccccceeccccccccccccCcceeeechhhHHhhhcc
Confidence 34555554 5568999999999999999987 999999965 7899999999999899999999976
Q ss_pred -CC-CCcHHHHHHhhhhhhhhhcCCCCCCCCCCCCCCCCCCCCC--CCCCCCCChHHHHHHHhhcCCChhhhhHhhcccc
Q 025588 88 -FP-ILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPPEG--RLPNATKGSDHLRDVFGHMGLSDKEIVVLSGGHT 163 (250)
Q Consensus 88 -~~-~vS~ADiialaa~~av~~~GGP~~~~~~GR~D~~~~~~~~--~lP~~~~~~~~l~~~F~~~Gl~~~e~VaL~GaHt 163 (250)
|| +|||||||+||+++||+.+|||.|+|++||+|+.++.+.+ +||.|..+++++++.|+++||+++|||||+||||
T Consensus 69 ~cp~~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHT 148 (230)
T PF00141_consen 69 ACPGVVSCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGASNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHT 148 (230)
T ss_dssp HSTTTS-HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHHHHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGG
T ss_pred cccCCCCHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhhhccccchhhhcceecccc
Confidence 66 6999999999999999999999999999999999997643 5999999999999999999999999999999999
Q ss_pred ccccccCCCC---------CC--------------C-CCCCCCCccChHHHHHHhccccCCccccchhhhcccCCCcHHH
Q 025588 164 LGRCHKERSG---------FE--------------G-PWTNNPLIFDNSYFKELLSGEKEGLLQLPSDKALLEDPVFRPL 219 (250)
Q Consensus 164 iG~~~~~~~~---------~~--------------g-~~~~tp~~fDN~Yy~~ll~~~~~gll~l~sD~~L~~d~~t~~~ 219 (250)
||++||.... ++ . +++ ||.+|||+||++|+++ +|+|. ||++|++|++|+++
T Consensus 149 iG~~~c~~f~rl~~~~dp~~d~~~~~~~C~~~~~~~~~~d-tp~~fDN~Yy~~ll~~--~gll~--SD~~L~~d~~t~~~ 223 (230)
T PF00141_consen 149 IGRAHCSSFSRLYFPPDPTMDPGYAGQNCNSGGDNGVPLD-TPTVFDNSYYKNLLNG--RGLLP--SDQALLNDPETRPI 223 (230)
T ss_dssp STEESGGCTGGTSCSSGTTSTHHHHHHSSSTSGCTCEESS-STTS-SSHHHHHHHHT--EEEEH--HHHHHHHSTTHHHH
T ss_pred cccceeccccccccccccccccccceeccCCCcccccccc-CCCcchhHHHHHHhcC--CCcCH--HHHHHhcCHHHHHH
Confidence 9999996211 00 0 234 8999999999999998 67765 99999999999999
Q ss_pred HHHhhcC
Q 025588 220 VEKYAAD 226 (250)
Q Consensus 220 v~~yA~~ 226 (250)
|++||+|
T Consensus 224 V~~yA~d 230 (230)
T PF00141_consen 224 VERYAQD 230 (230)
T ss_dssp HHHHHHT
T ss_pred HHHHhcC
Confidence 9999976
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=2.1e-55 Score=425.93 Aligned_cols=230 Identities=36% Similarity=0.619 Sum_probs=208.1
Q ss_pred HHHHHHHHHHHHHHhcC---------CchhHHHHHhhccccccccCCCCCCCC-CcccCcccccccccCchHHHHHHHHH
Q 025588 14 KAVEKCKRKLRGLIAEK---------HCAPIILRLAWHSAGTYDVNTKTGGPF-GTIRHPDELAHEANNGLDIAVRLLEP 83 (250)
Q Consensus 14 ~~v~~~~~~~~~~~~~~---------~~a~~~lRl~FHDc~~~d~s~~~gG~d-gsi~~~~E~~~~~N~gl~~~~~~i~~ 83 (250)
-.++.+|++|+++++++ +++|.+|||+||+++|||.++++||++ |+|+|.+|.+++.|.+|++++++|++
T Consensus 54 ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~pe~~w~~N~gL~ka~~~L~p 133 (726)
T PRK15061 54 LDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDNVNLDKARRLLWP 133 (726)
T ss_pred hhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCcccccchhhhhHHHHHHHHHH
Confidence 34567999999999875 699999999999999999999999997 79999999999999999999999999
Q ss_pred HHhhCC-CCcHHHHHHhhhhhhhhhcCCCCCCCCCCCCCCCCCCC-----------------------------------
Q 025588 84 IEQQFP-ILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPP----------------------------------- 127 (250)
Q Consensus 84 ik~~~~-~vS~ADiialaa~~av~~~GGP~~~~~~GR~D~~~~~~----------------------------------- 127 (250)
||++|+ .||+||+|+||+++|||.+|||.|+|.+||.|...+..
T Consensus 134 ik~ky~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~pl~a~~mgli 213 (726)
T PRK15061 134 IKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLENPLAAVQMGLI 213 (726)
T ss_pred HHHHhCCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccccccccccccchhhhhccce
Confidence 999997 79999999999999999999999999999999865321
Q ss_pred ----CC--CCCCCCCChHHHHHHHhhcCCChhhhhHhh-ccccccccccCC-----------------------------
Q 025588 128 ----EG--RLPNATKGSDHLRDVFGHMGLSDKEIVVLS-GGHTLGRCHKER----------------------------- 171 (250)
Q Consensus 128 ----~~--~lP~~~~~~~~l~~~F~~~Gl~~~e~VaL~-GaHtiG~~~~~~----------------------------- 171 (250)
++ -+|+|..++.+|++.|.+|||+.+|||||+ ||||||++||..
T Consensus 214 yvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rlgpdP~~a~~~~qgLgw~~~c~~g~ 293 (726)
T PRK15061 214 YVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHVGPEPEAAPIEEQGLGWKNSYGSGK 293 (726)
T ss_pred ecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCcccccCCCCCcCHHHHHhccccccCCCCC
Confidence 11 278999999999999999999999999995 999999999941
Q ss_pred ------CCCCCCCCCCCCccChHHHHHHhcccc--------------------------------CCccccchhhhcccC
Q 025588 172 ------SGFEGPWTNNPLIFDNSYFKELLSGEK--------------------------------EGLLQLPSDKALLED 213 (250)
Q Consensus 172 ------~~~~g~~~~tp~~fDN~Yy~~ll~~~~--------------------------------~gll~l~sD~~L~~d 213 (250)
++++|+|+.||.+|||+||++|+.+++ ..+.+|+||++|..|
T Consensus 294 g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~pd~~~~~~~~~~~MLtSD~AL~~D 373 (726)
T PRK15061 294 GADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTVPDAHDPSKKHAPTMLTTDLALRFD 373 (726)
T ss_pred CCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccccCCcccccccccCcccccccHHhhcC
Confidence 246788999999999999999998621 136778899999999
Q ss_pred CCcHHHHHHhhcChHHHHHHHHHHHHHHHh
Q 025588 214 PVFRPLVEKYAADEDAVFADYAEAHLKLSE 243 (250)
Q Consensus 214 ~~t~~~v~~yA~~~~~F~~~Fa~am~Km~~ 243 (250)
|+++++|++||.|++.|+++|++||.||++
T Consensus 374 P~~r~iV~~fA~d~~~F~~~FA~A~~KL~h 403 (726)
T PRK15061 374 PEYEKISRRFLENPEEFADAFARAWFKLTH 403 (726)
T ss_pred CcHHHHHHHHhcCHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999965
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=8.5e-54 Score=376.13 Aligned_cols=209 Identities=27% Similarity=0.417 Sum_probs=183.8
Q ss_pred hcCCchhHHHHHhhccccccccCCCCCCCCCcccCcccccccccCchH--HHHHHHHHHHhhCCCCcHHHHHHhhhhhhh
Q 025588 28 AEKHCAPIILRLAWHSAGTYDVNTKTGGPFGTIRHPDELAHEANNGLD--IAVRLLEPIEQQFPILSYADFYQLAGVVAV 105 (250)
Q Consensus 28 ~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgsi~~~~E~~~~~N~gl~--~~~~~i~~ik~~~~~vS~ADiialaa~~av 105 (250)
.++..+++||||+||||++||...+.|||||||++ |...++|.|+. ..+..++.|+. ++|||||||+||+++||
T Consensus 37 ~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIll--e~~~~En~G~~~n~~l~~~~~i~~--~~VScADiialAa~~AV 112 (264)
T cd08201 37 PGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQY--ELDRPENIGSGFNTTLNFFVNFYS--PRSSMADLIAMGVVTSV 112 (264)
T ss_pred CCccHHHHHHHHHHHhhcCcccCCCCCCCCcceee--cCCChhhccCchhhccccceeecc--CccCHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999998 57788999875 34555555533 58999999999999999
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhhcCCChhhhhHhhc-cccccccccCCC------CCC--C
Q 025588 106 EVTGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVFGHMGLSDKEIVVLSG-GHTLGRCHKERS------GFE--G 176 (250)
Q Consensus 106 ~~~GGP~~~~~~GR~D~~~~~~~~~lP~~~~~~~~l~~~F~~~Gl~~~e~VaL~G-aHtiG~~~~~~~------~~~--g 176 (250)
+.||||.|+|++||+|++.+.+.+ ||.|+.++++|++.|+++||+++|||+|+| |||||++||..+ ++. +
T Consensus 113 ~~~GGP~i~v~~GR~Da~~s~~~g-lP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG~ahc~~f~~~~~~g~~~~~ 191 (264)
T cd08201 113 ASCGGPVVPFRAGRIDATEAGQAG-VPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLGGVHSEDFPEIVPPGSVPDT 191 (264)
T ss_pred HHcCCCeecccccCCCcccccccc-CCCCccCHHHHHHHHHHcCCChHHHheeecCCeeeeecccccchhhcCCccccCC
Confidence 999999999999999999998876 999999999999999999999999999995 999999999764 333 3
Q ss_pred --CCCCCCCccChHHHHHHhccccCCcccc------chhhhcccCCCcHHHHHHhhcChHHHHHHHHHHHHHHHh
Q 025588 177 --PWTNNPLIFDNSYFKELLSGEKEGLLQL------PSDKALLEDPVFRPLVEKYAADEDAVFADYAEAHLKLSE 243 (250)
Q Consensus 177 --~~~~tp~~fDN~Yy~~ll~~~~~gll~l------~sD~~L~~d~~t~~~v~~yA~~~~~F~~~Fa~am~Km~~ 243 (250)
||+.||.+|||+||.++++|++.|+|++ .||..+++.+.. ..++..| +++.|.+.++..+.||.+
T Consensus 192 ~~p~dstp~~FDn~~f~E~l~g~~~~~L~~~~~~~~~sd~r~f~~d~n-~t~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 192 VLQFFDTTIQFDNKVVTEYLSGTTNNPLVVGPNNTTNSDLRIFSSDGN-VTMNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred CCCCCCCccccchHHHHHHhcCCCCCceeecCCCCccchhhheecCcc-HHHHHhc-ChHHHHHHHHHHHHHHhC
Confidence 8999999999999999999988888754 588888887664 4667787 799999999999999974
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=2.2e-51 Score=364.88 Aligned_cols=228 Identities=29% Similarity=0.430 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHhhccccccccCCCCCCCCCc-ccCcccccccccCc--hHHHHHHHHHHHhhCC
Q 025588 13 QKAVEKCKRKLRGLIAEKHCAPIILRLAWHSAGTYDVNTKTGGPFGT-IRHPDELAHEANNG--LDIAVRLLEPIEQQFP 89 (250)
Q Consensus 13 ~~~v~~~~~~~~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgs-i~~~~E~~~~~N~g--l~~~~~~i~~ik~~~~ 89 (250)
.+.|..+|++ ++....+++.+|||+||+++|||.++++||+||+ |++.+|++|+.|.+ |.+++.+|++||+++|
T Consensus 13 ~~di~~lk~~---i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~pe~~w~~N~~~~L~~~~~~Le~ik~~~~ 89 (297)
T cd08200 13 DADIAALKAK---ILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLAPQKDWEVNEPEELAKVLAVLEGIQKEFN 89 (297)
T ss_pred HHHHHHHHHH---HHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCccccCcCccCcHHHHHHHHHHHHHHHHhc
Confidence 3455555544 5566779999999999999999999999999985 99999999999999 9999999999999997
Q ss_pred -------CCcHHHHHHhhhhhhhhhcCC-----CCCCCCCCCCCCCCCCC--C---CCCCCCCC------------ChHH
Q 025588 90 -------ILSYADFYQLAGVVAVEVTGG-----PEIPFHPGRPDKSDPPP--E---GRLPNATK------------GSDH 140 (250)
Q Consensus 90 -------~vS~ADiialaa~~av~~~GG-----P~~~~~~GR~D~~~~~~--~---~~lP~~~~------------~~~~ 140 (250)
.||+||+|+||+.+|||.+|| |.|+|.+||.|+..+.. + ..+|.+.. ..+.
T Consensus 90 ~~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~ 169 (297)
T cd08200 90 ESQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEM 169 (297)
T ss_pred ccccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHH
Confidence 799999999999999999999 99999999999987632 1 24564432 3467
Q ss_pred HHHHHhhcCCChhhhhHhhccc-cccccccCCCCCCCCCCCCCCccChHHHHHHhccc--c----------------CCc
Q 025588 141 LRDVFGHMGLSDKEIVVLSGGH-TLGRCHKERSGFEGPWTNNPLIFDNSYFKELLSGE--K----------------EGL 201 (250)
Q Consensus 141 l~~~F~~~Gl~~~e~VaL~GaH-tiG~~~~~~~~~~g~~~~tp~~fDN~Yy~~ll~~~--~----------------~gl 201 (250)
|++.|.+||||++|||||+||| ++|.+|. ++ +.|+|+.+|.+|||.||++|++.. + .|.
T Consensus 170 Lrd~f~rlglsd~EmvaL~Gg~r~lG~~~~-~s-~~G~wT~~p~~f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~ 247 (297)
T cd08200 170 LVDKAQLLTLTAPEMTVLVGGLRVLGANYG-GS-KHGVFTDRPGVLTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGE 247 (297)
T ss_pred HHHHHHhCCCChHHHhheecchhhcccCCC-CC-CCCCCcCCCCccccHHHHHHhcccceeeecCCCCCceeeccCCCCc
Confidence 9999999999999999999998 6999886 44 469999999999999999999631 0 122
Q ss_pred ---cccchhhhcccCCCcHHHHHHhhcC--hHHHHHHHHHHHHHHHhCC
Q 025588 202 ---LQLPSDKALLEDPVFRPLVEKYAAD--EDAVFADYAEAHLKLSELG 245 (250)
Q Consensus 202 ---l~l~sD~~L~~d~~t~~~v~~yA~~--~~~F~~~Fa~am~Km~~~g 245 (250)
+++++|+.|.+|++.|++|+.||.| ++.|++||++||.||+++.
T Consensus 248 ~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~~F~~DF~~A~~Klmeld 296 (297)
T cd08200 248 VKWTATRVDLVFGSNSELRAVAEVYASDDAQEKFVKDFVAAWTKVMNLD 296 (297)
T ss_pred eeeccChhhhhhccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcC
Confidence 2478999999999999999999999 9999999999999999864
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=7.4e-46 Score=361.31 Aligned_cols=228 Identities=29% Similarity=0.434 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHhhccccccccCCCCCCCCCc-ccCccccccccc--CchHHHHHHHHHHHhhCC
Q 025588 13 QKAVEKCKRKLRGLIAEKHCAPIILRLAWHSAGTYDVNTKTGGPFGT-IRHPDELAHEAN--NGLDIAVRLLEPIEQQFP 89 (250)
Q Consensus 13 ~~~v~~~~~~~~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgs-i~~~~E~~~~~N--~gl~~~~~~i~~ik~~~~ 89 (250)
++.|..+|++ ++.+...++.+||++||+++|||.++++||+||. |++++|++|+.| .+|.+++.+|++||+++|
T Consensus 431 ~~di~~lk~~---i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~pe~~w~~N~p~gL~~vl~~Le~Ik~~f~ 507 (716)
T TIGR00198 431 EGDIKELKQQ---ILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLEPQKNWPVNEPTRLAKVLAVLEKIQAEFA 507 (716)
T ss_pred HHHHHHHHHH---HHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecchhcCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 4455444333 5567778999999999999999999999999985 999999999999 899999999999999999
Q ss_pred --CCcHHHHHHhhhhhhhhhc---CCC--CCCCCCCCCCCCCCC--CCCCC---CCC------------CCChHHHHHHH
Q 025588 90 --ILSYADFYQLAGVVAVEVT---GGP--EIPFHPGRPDKSDPP--PEGRL---PNA------------TKGSDHLRDVF 145 (250)
Q Consensus 90 --~vS~ADiialaa~~av~~~---GGP--~~~~~~GR~D~~~~~--~~~~l---P~~------------~~~~~~l~~~F 145 (250)
.||+||+|+|||.+|||.+ ||| .|||.+||.|++... +++.. |.+ ....+.|++.|
T Consensus 508 ~~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~td~~~~~~l~p~adgfRn~~~~~~~~~~~~~l~d~a 587 (716)
T TIGR00198 508 KGPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMTDAESFTPLEPIADGFRNYLKRDYAVTPEELLLDKA 587 (716)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCCCccccccCCCCCcccchhccccccCCHHHHHHHHH
Confidence 8999999999999999998 897 689999999998763 22222 211 12345689999
Q ss_pred hhcCCChhhhhHhhccc-cccccccCCCCCCCCCCCCCCccChHHHHHHhccc--c----------------CCcccc--
Q 025588 146 GHMGLSDKEIVVLSGGH-TLGRCHKERSGFEGPWTNNPLIFDNSYFKELLSGE--K----------------EGLLQL-- 204 (250)
Q Consensus 146 ~~~Gl~~~e~VaL~GaH-tiG~~~~~~~~~~g~~~~tp~~fDN~Yy~~ll~~~--~----------------~gll~l-- 204 (250)
.++|||+.|||||+||| ++|++|.. + +.|+|+.+|.+|||.||++|++.. + .|.+++
T Consensus 588 ~~lglt~~EmvaL~Gg~r~lG~~~~~-s-~~G~~T~~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~ 665 (716)
T TIGR00198 588 QLLTLTAPEMTVLIGGMRVLGANHGG-S-KHGVFTDRVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTA 665 (716)
T ss_pred HhCCCChHHHHheecchhhccccCCC-C-CCCCCcCCCCccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeecc
Confidence 99999999999999995 99999984 3 469999999999999999999842 1 133333
Q ss_pred -chhhhcccCCCcHHHHHHhhcCh--HHHHHHHHHHHHHHHhCC
Q 025588 205 -PSDKALLEDPVFRPLVEKYAADE--DAVFADYAEAHLKLSELG 245 (250)
Q Consensus 205 -~sD~~L~~d~~t~~~v~~yA~~~--~~F~~~Fa~am~Km~~~g 245 (250)
++|+.|.+|++.|++|+.||+|+ ++|++||++||.|+.++|
T Consensus 666 t~~Dl~~~sd~~lra~aE~YA~dd~~~~F~~DF~~Aw~Klm~ld 709 (716)
T TIGR00198 666 TRVDLVFGSNSILRAVAEVYAQDDAREKFVKDFVAAWTKVMNLD 709 (716)
T ss_pred ChhheeeccCHHHHHHHHHHhcccccchHHHHHHHHHHHHHhCC
Confidence 78999999999999999999997 899999999999999987
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=8.5e-45 Score=352.20 Aligned_cols=227 Identities=30% Similarity=0.443 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHhhccccccccCCCCCCCCCc-ccCcccccccccC--chHHHHHHHHHHHhhC--
Q 025588 14 KAVEKCKRKLRGLIAEKHCAPIILRLAWHSAGTYDVNTKTGGPFGT-IRHPDELAHEANN--GLDIAVRLLEPIEQQF-- 88 (250)
Q Consensus 14 ~~v~~~~~~~~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dgs-i~~~~E~~~~~N~--gl~~~~~~i~~ik~~~-- 88 (250)
..|..+|.+ ++.+.-..+.+||++||+++|||.++++||+||. |++++|++++.|. +|..++++|++||+++
T Consensus 439 ~di~~lk~~---i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~ 515 (726)
T PRK15061 439 ADIAALKAK---ILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNEPAQLAKVLAVLEGIQAEFNA 515 (726)
T ss_pred HHHHHHHHH---HHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecccccCccccCHHHHHHHHHHHHHHHHHHhh
Confidence 345444433 5566778999999999999999999999999985 9999999999999 9999999999999997
Q ss_pred -----CCCcHHHHHHhhhhhhhhhc---CC--CCCCCCCCCCCCCCCCC--C---CCCCCCC------------CChHHH
Q 025588 89 -----PILSYADFYQLAGVVAVEVT---GG--PEIPFHPGRPDKSDPPP--E---GRLPNAT------------KGSDHL 141 (250)
Q Consensus 89 -----~~vS~ADiialaa~~av~~~---GG--P~~~~~~GR~D~~~~~~--~---~~lP~~~------------~~~~~l 141 (250)
|.||.||+|+||+++|||.+ || |.|||.+||.|++.... + ..+|... ...+.|
T Consensus 516 ~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td~esf~~l~P~Adgfrny~~~~~~~~~e~~L 595 (726)
T PRK15061 516 AQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTDVESFAVLEPKADGFRNYLKKGYSVSPEELL 595 (726)
T ss_pred ccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCCcccccccCCCCccccccccccCCCCHHHHH
Confidence 68999999999999999998 58 99999999999987632 2 3567643 123789
Q ss_pred HHHHhhcCCChhhhhHhhccc-cccccccCCCCCCCCCCCCCCccChHHHHHHhccc--c----------------CCcc
Q 025588 142 RDVFGHMGLSDKEIVVLSGGH-TLGRCHKERSGFEGPWTNNPLIFDNSYFKELLSGE--K----------------EGLL 202 (250)
Q Consensus 142 ~~~F~~~Gl~~~e~VaL~GaH-tiG~~~~~~~~~~g~~~~tp~~fDN~Yy~~ll~~~--~----------------~gll 202 (250)
++.|.++|||+.|||||+||| ++|.+|. ++ +.|+|+.+|.+|||.||++|++.. + .|.+
T Consensus 596 ~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~-~S-~~G~~T~~p~~fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~ 673 (726)
T PRK15061 596 VDKAQLLTLTAPEMTVLVGGLRVLGANYG-GS-KHGVFTDRPGVLTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEV 673 (726)
T ss_pred HHHHHhCCCChHHHhheecchhhcccCCC-CC-CCCCCcCCCCccccHHHHHHhcCCceeeecCCCCCceeeccCCCcce
Confidence 999999999999999999997 7898885 34 469999999999999999999731 0 1222
Q ss_pred ---ccchhhhcccCCCcHHHHHHhhcC--hHHHHHHHHHHHHHHHhCC
Q 025588 203 ---QLPSDKALLEDPVFRPLVEKYAAD--EDAVFADYAEAHLKLSELG 245 (250)
Q Consensus 203 ---~l~sD~~L~~d~~t~~~v~~yA~~--~~~F~~~Fa~am~Km~~~g 245 (250)
.+++|+.|.+|++.|++|+.||+| +++|++||++||.|+++++
T Consensus 674 ~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~kF~~DF~~Aw~Kvmeld 721 (726)
T PRK15061 674 KWTATRVDLVFGSNSQLRALAEVYASDDAKEKFVRDFVAAWTKVMNLD 721 (726)
T ss_pred eeccChhheecccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCC
Confidence 257999999999999999999999 9999999999999999987
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.4e-42 Score=319.66 Aligned_cols=233 Identities=35% Similarity=0.616 Sum_probs=208.2
Q ss_pred HHHHHHHHHHHHhcC---------CchhHHHHHhhccccccccCCCCCCCC-CcccCcccccccccCchHHHHHHHHHHH
Q 025588 16 VEKCKRKLRGLIAEK---------HCAPIILRLAWHSAGTYDVNTKTGGPF-GTIRHPDELAHEANNGLDIAVRLLEPIE 85 (250)
Q Consensus 16 v~~~~~~~~~~~~~~---------~~a~~~lRl~FHDc~~~d~s~~~gG~d-gsi~~~~E~~~~~N~gl~~~~~~i~~ik 85 (250)
+..++++|++++.++ ++.|.+|||+||-++||+..++.||+. |..+|.++.+||.|.+|++++++|++||
T Consensus 69 ~~Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G~qRFaPlnSWPDN~nLDKarRLLWPIK 148 (730)
T COG0376 69 LAAVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDNANLDKARRLLWPIK 148 (730)
T ss_pred HHHHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCCceecccccCCCcccchHHHHHHhhhHh
Confidence 446889999998875 589999999999999999999999987 6999999999999999999999999999
Q ss_pred hhCC-CCcHHHHHHhhhhhhhhhcCCCCCCCCCCCCCCCCCCC-------------------------------------
Q 025588 86 QQFP-ILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPP------------------------------------- 127 (250)
Q Consensus 86 ~~~~-~vS~ADiialaa~~av~~~GGP~~~~~~GR~D~~~~~~------------------------------------- 127 (250)
++|+ +||+||+|+|++.+|++.+|++.+.|..||.|...+..
T Consensus 149 kKYG~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqMGLIYVN 228 (730)
T COG0376 149 KKYGRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQMGLIYVN 228 (730)
T ss_pred HhhcccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhheeeeEEeC
Confidence 9998 89999999999999999999999999999999887632
Q ss_pred -C--CCCCCCCCChHHHHHHHhhcCCChhhhhHhh-ccccccccccCC--------------------------------
Q 025588 128 -E--GRLPNATKGSDHLRDVFGHMGLSDKEIVVLS-GGHTLGRCHKER-------------------------------- 171 (250)
Q Consensus 128 -~--~~lP~~~~~~~~l~~~F~~~Gl~~~e~VaL~-GaHtiG~~~~~~-------------------------------- 171 (250)
+ ...|+|..+..++++.|++|+++.+|+|||+ ||||+|++|...
T Consensus 229 PEGpng~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~vg~ePe~a~ie~qGlGW~~~~g~G~G~d 308 (730)
T COG0376 229 PEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASNVGPEPEAAPIEQQGLGWANTYGSGKGPD 308 (730)
T ss_pred CCCCCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhhcCCCccccchhhhccccccccCCCcCcc
Confidence 1 2368888889999999999999999999995 699999999742
Q ss_pred ---CCCCCCCCCCCCccChHHHHHHhcccc-------------------------------CCccccchhhhcccCCCcH
Q 025588 172 ---SGFEGPWTNNPLIFDNSYFKELLSGEK-------------------------------EGLLQLPSDKALLEDPVFR 217 (250)
Q Consensus 172 ---~~~~g~~~~tp~~fDN~Yy~~ll~~~~-------------------------------~gll~l~sD~~L~~d~~t~ 217 (250)
+|..++|+.+|..|||+||.+|+..++ ..+.||.+|++|.-||.++
T Consensus 309 titsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~MlttDlaLr~DP~Y~ 388 (730)
T COG0376 309 TITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPMMLTTDLALRFDPEYE 388 (730)
T ss_pred cccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCceeeccchhhhcChHHH
Confidence 123567999999999999999998641 1467889999999999999
Q ss_pred HHHHHhhcChHHHHHHHHHHHHHHHhCCCCC
Q 025588 218 PLVEKYAADEDAVFADYAEAHLKLSELGFAD 248 (250)
Q Consensus 218 ~~v~~yA~~~~~F~~~Fa~am~Km~~~gv~~ 248 (250)
.+.++|..|++.|.+.|++||.||.+-..-+
T Consensus 389 kIs~rf~e~pd~F~~~FArAWfKLtHRDMGP 419 (730)
T COG0376 389 KISRRFLEDPDEFADAFARAWFKLTHRDMGP 419 (730)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHhhccCCc
Confidence 9999999999999999999999999865443
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2.7e-23 Score=194.81 Aligned_cols=228 Identities=30% Similarity=0.428 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHhhccccccccCCCCCCCCC-cccCcccccccccC--chHHHHHHHHHHHhhCC
Q 025588 13 QKAVEKCKRKLRGLIAEKHCAPIILRLAWHSAGTYDVNTKTGGPFG-TIRHPDELAHEANN--GLDIAVRLLEPIEQQFP 89 (250)
Q Consensus 13 ~~~v~~~~~~~~~~~~~~~~a~~~lRl~FHDc~~~d~s~~~gG~dg-si~~~~E~~~~~N~--gl~~~~~~i~~ik~~~~ 89 (250)
...|...|. +++++.-..++++..+|..+.||..|++.||+|| .|++.+.++|+.|. .|.+.+.+++.|++.+.
T Consensus 448 d~di~~lK~---~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLaPqkdWevN~P~~l~kvl~~le~iq~~fn 524 (730)
T COG0376 448 DADIAALKA---KILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNQPAELAKVLAVLEKIQKEFN 524 (730)
T ss_pred hHHHHHHHH---HHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeecccccCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 344444433 3677788899999999999999999999999997 99999999999996 57788999999999886
Q ss_pred -CCcHHHHHHhhhhhhhhhc---CCC--CCCCCCCCCCCCCCCC-----CCCCCCC------------CCChHHHHHHHh
Q 025588 90 -ILSYADFYQLAGVVAVEVT---GGP--EIPFHPGRPDKSDPPP-----EGRLPNA------------TKGSDHLRDVFG 146 (250)
Q Consensus 90 -~vS~ADiialaa~~av~~~---GGP--~~~~~~GR~D~~~~~~-----~~~lP~~------------~~~~~~l~~~F~ 146 (250)
+||.||+|+|++..||+.+ +|- .+||.+||.|++.... ...-|.. ....+-|++.-+
T Consensus 525 kkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkAq 604 (730)
T COG0376 525 KKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKKDYVLTPEELLVDKAQ 604 (730)
T ss_pred CccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccCCCcCCHHHHHHHHHH
Confidence 6999999999999999974 453 5789999999987521 1111221 123355888889
Q ss_pred hcCCChhhhhHhhcccc-ccccccCCCCCCCCCCCCCCccChHHHHHHhcccc--------C----------Ccc---cc
Q 025588 147 HMGLSDKEIVVLSGGHT-LGRCHKERSGFEGPWTNNPLIFDNSYFKELLSGEK--------E----------GLL---QL 204 (250)
Q Consensus 147 ~~Gl~~~e~VaL~GaHt-iG~~~~~~~~~~g~~~~tp~~fDN~Yy~~ll~~~~--------~----------gll---~l 204 (250)
..+||..||++|.||-. +|.-+.. + -.|.++..|.++.|.||.||++... + |-+ ..
T Consensus 605 lL~LtapemtVLiGGlRvLg~n~g~-s-~~GVfT~~pg~LtndFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~t 682 (730)
T COG0376 605 LLTLTAPEMTVLIGGLRVLGANYGG-S-KHGVFTDRPGVLTNDFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTAT 682 (730)
T ss_pred HhccCCccceEEEcceEeeccCCCC-C-ccceeccCcccccchhhhhhhhccceeeeccccccceeccccccCceEeeee
Confidence 99999999999999874 5544432 1 2578999999999999999998521 1 221 22
Q ss_pred chhhhcccCCCcHHHHHHhhcC--hHHHHHHHHHHHHHHHhCC
Q 025588 205 PSDKALLEDPVFRPLVEKYAAD--EDAVFADYAEAHLKLSELG 245 (250)
Q Consensus 205 ~sD~~L~~d~~t~~~v~~yA~~--~~~F~~~Fa~am~Km~~~g 245 (250)
.+|..+-++++.|.+.+.||++ +++|.+||+.||.|..++.
T Consensus 683 rvDLvfGsns~LRA~aEVYa~dda~ekFv~DFvaaw~kVMn~D 725 (730)
T COG0376 683 RVDLVFGSNSELRALAEVYASDDAKEKFVKDFVAAWTKVMNLD 725 (730)
T ss_pred EEeEEecCcHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccc
Confidence 4889999999999999999986 7899999999999998763
No 19
>PF09533 DUF2380: Predicted lipoprotein of unknown function (DUF2380); InterPro: IPR011755 This family consists of at least 9 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. One appears truncated toward the N terminus; the others are predicted lipoproteins. The function is unknown.
Probab=40.04 E-value=23 Score=29.98 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=25.7
Q ss_pred hHHHHHHHhhcCCChhhhhHhhcccccccccc
Q 025588 138 SDHLRDVFGHMGLSDKEIVVLSGGHTLGRCHK 169 (250)
Q Consensus 138 ~~~l~~~F~~~Gl~~~e~VaL~GaHtiG~~~~ 169 (250)
..+|...|+++|+++.+-++++..|.=-+.|.
T Consensus 107 a~~la~wF~~~Gi~IHd~ti~Ip~~vH~rIH~ 138 (188)
T PF09533_consen 107 AEELAEWFERRGIDIHDYTIPIPRDVHRRIHG 138 (188)
T ss_pred cHHHHHHHHHcCCChhheeEecCHHHHHHhhC
Confidence 46799999999999999999887765445554
No 20
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=38.42 E-value=20 Score=22.08 Aligned_cols=14 Identities=36% Similarity=0.686 Sum_probs=11.6
Q ss_pred hcCCChhhhh-Hhhc
Q 025588 147 HMGLSDKEIV-VLSG 160 (250)
Q Consensus 147 ~~Gl~~~e~V-aL~G 160 (250)
..|||++|.| ||+|
T Consensus 20 ~l~LtpEDAvEaLi~ 34 (35)
T PF08383_consen 20 ALGLTPEDAVEALIG 34 (35)
T ss_pred hcCCCHHHHHHHHhc
Confidence 4689999988 7876
No 21
>cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=34.41 E-value=28 Score=25.61 Aligned_cols=30 Identities=30% Similarity=0.607 Sum_probs=20.1
Q ss_pred HHHHhhcChHHHHHHH-----------HHHHHHHHhCCCCC
Q 025588 219 LVEKYAADEDAVFADY-----------AEAHLKLSELGFAD 248 (250)
Q Consensus 219 ~v~~yA~~~~~F~~~F-----------a~am~Km~~~gv~~ 248 (250)
+.++|..|++.+++.| ..-|.+|..+||.+
T Consensus 19 ~rerF~~DPea~~~~~gLt~eE~~aL~~~D~~~L~~lGvhp 59 (81)
T cd07922 19 LIERFQDDPSAVFEEYGLTPAERAALREGTFGALTSIGVHP 59 (81)
T ss_pred HHHHHHHCHHHHHHHcCCCHHHHHHHHccCHHHHHHcCCCH
Confidence 4566667777776666 34467888888764
No 22
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=28.96 E-value=81 Score=29.13 Aligned_cols=59 Identities=15% Similarity=0.161 Sum_probs=37.1
Q ss_pred hhhcCCCCCCCCCCCCCCCCCCCCC--CC-CCCC---CChHHHHHHHhhcCCC----------hhhhhHhhcccc
Q 025588 105 VEVTGGPEIPFHPGRPDKSDPPPEG--RL-PNAT---KGSDHLRDVFGHMGLS----------DKEIVVLSGGHT 163 (250)
Q Consensus 105 v~~~GGP~~~~~~GR~D~~~~~~~~--~l-P~~~---~~~~~l~~~F~~~Gl~----------~~e~VaL~GaHt 163 (250)
+..+|-..|..++||.+.+.-...+ .. |... ..+.++.+.|+..|+. .+|+.+|.|+|.
T Consensus 165 aa~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qv~~laG~d~ 239 (317)
T TIGR00874 165 CAEAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPTEVMGASFRNKEEILALAGCDR 239 (317)
T ss_pred HHHcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCCCcEEEeeccCCHHHHHHHHCCCe
Confidence 3345778899999999775332111 11 1112 3456677788888864 467778888883
No 23
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=27.92 E-value=43 Score=22.53 Aligned_cols=30 Identities=27% Similarity=0.424 Sum_probs=21.9
Q ss_pred HHHhhhhh---hhhhcCCCCCCCCCCCCCCCCC
Q 025588 96 FYQLAGVV---AVEVTGGPEIPFHPGRPDKSDP 125 (250)
Q Consensus 96 iialaa~~---av~~~GGP~~~~~~GR~D~~~~ 125 (250)
+|+||+.. -...|.||.+++-.||.-..-|
T Consensus 9 ~l~La~CqT~D~lAtckGpiFpLNVgrWqptps 41 (55)
T PRK13859 9 ALALAGCQTNDTLASCKGPIFPLNVGRWQPTPS 41 (55)
T ss_pred HHHHHhccccCccccccCCccccccccccCChh
Confidence 56666653 4556899999999999866544
No 24
>PTZ00411 transaldolase-like protein; Provisional
Probab=27.25 E-value=93 Score=28.94 Aligned_cols=58 Identities=21% Similarity=0.220 Sum_probs=37.1
Q ss_pred hcCCCCCCCCCCCCCCCCCCCC---CCCCCCCC---ChHHHHHHHhhcCCC----------hhhhhHhhccccc
Q 025588 107 VTGGPEIPFHPGRPDKSDPPPE---GRLPNATK---GSDHLRDVFGHMGLS----------DKEIVVLSGGHTL 164 (250)
Q Consensus 107 ~~GGP~~~~~~GR~D~~~~~~~---~~lP~~~~---~~~~l~~~F~~~Gl~----------~~e~VaL~GaHti 164 (250)
.+|-..|..++||.+.+.-.+. ...+.... .+.++.+.|+..|+. .+|+..|.|+|.+
T Consensus 179 eAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qi~~laG~D~l 252 (333)
T PTZ00411 179 QAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNTGEILELAGCDKL 252 (333)
T ss_pred HcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecccCCHHHHHHHHCCCEE
Confidence 3577888999999976543221 11122222 355677788888874 4677888999843
No 25
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=26.75 E-value=88 Score=28.81 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=34.3
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCC-CCCCC-----CCChHHHHHHHhhcCCCh----------hhhhHhhccc
Q 025588 107 VTGGPEIPFHPGRPDKSDPPPEG-RLPNA-----TKGSDHLRDVFGHMGLSD----------KEIVVLSGGH 162 (250)
Q Consensus 107 ~~GGP~~~~~~GR~D~~~~~~~~-~lP~~-----~~~~~~l~~~F~~~Gl~~----------~e~VaL~GaH 162 (250)
.+|-..+..++||.|.+.-...+ ..|.+ -..+.++.+.|+..|+.+ .|+..|.|+|
T Consensus 167 ~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~~~~~~~T~vmaASfRn~~~v~~laG~d 238 (313)
T cd00957 167 EAGVTLISPFVGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYYKKFGYKTKVMGASFRNIGQILALAGCD 238 (313)
T ss_pred HcCCCEEEeecchHHHhhhhccccccCCccCCcHHHHHHHHHHHHHHcCCCcEEEecccCCHHHHHHHhCCC
Confidence 35777889999999865332111 11111 123567777888888754 5566677776
No 26
>PRK05269 transaldolase B; Provisional
Probab=26.50 E-value=51 Score=30.42 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=36.0
Q ss_pred hcCCCCCCCCCCCCCCCCCCC---CCCCCCC---CCChHHHHHHHhhcCCC----------hhhhhHhhccccc
Q 025588 107 VTGGPEIPFHPGRPDKSDPPP---EGRLPNA---TKGSDHLRDVFGHMGLS----------DKEIVVLSGGHTL 164 (250)
Q Consensus 107 ~~GGP~~~~~~GR~D~~~~~~---~~~lP~~---~~~~~~l~~~F~~~Gl~----------~~e~VaL~GaHti 164 (250)
.+|-..+..++||.|...-.. ...-+.. -..+.++.+.|+..|+. +.++..|.|+|++
T Consensus 169 ~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~im~ASfrn~~~v~~laG~d~v 242 (318)
T PRK05269 169 EAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTVVMGASFRNTGQILELAGCDRL 242 (318)
T ss_pred HcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCceEEeeccCCHHHHHHHhCCCeE
Confidence 357788899999998653211 1111112 22456777788888874 3566677888854
No 27
>PRK12346 transaldolase A; Provisional
Probab=25.39 E-value=1e+02 Score=28.49 Aligned_cols=59 Identities=15% Similarity=0.115 Sum_probs=37.4
Q ss_pred hhcCCCCCCCCCCCCCCCCCCC--CCCC-CCCCC---ChHHHHHHHhhcCCC----------hhhhhHhhccccc
Q 025588 106 EVTGGPEIPFHPGRPDKSDPPP--EGRL-PNATK---GSDHLRDVFGHMGLS----------DKEIVVLSGGHTL 164 (250)
Q Consensus 106 ~~~GGP~~~~~~GR~D~~~~~~--~~~l-P~~~~---~~~~l~~~F~~~Gl~----------~~e~VaL~GaHti 164 (250)
..+|-..|..++||.|.+.-.. ...+ |.... .+.++.+.|+..|+. +.|+.+|.|+|.+
T Consensus 167 a~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~Vm~ASfRn~~qi~alaG~d~l 241 (316)
T PRK12346 167 AEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHRYETIVMGASFRRTEQILALAGCDRL 241 (316)
T ss_pred HHcCCCEEEecccHHHHhhhhccccccccccCCChHHHHHHHHHHHHHcCCCcEEEecccCCHHHHHHHhCCCEE
Confidence 3467788999999998754321 1112 22222 356677788888763 4677788888843
No 28
>PF10937 DUF2638: Protein of unknown function (DUF2638); InterPro: IPR020373 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a component of the mitochondrial small ribosomal subunit. Mature mitochondrial ribosomes consist of a small (37S) and a large (54S) subunit. The 37S subunit contains at least 33 different proteins and 1 molecule of RNA (15S). The 54S subunit contains at least 45 different proteins and 1 molecule of RNA (21S). This entry is represented by a mitochondrial ribosomal protein of the small subunit, which has similarity to human mitochondrial ribosomal protein MRP-S36 [, , ].
Probab=24.26 E-value=73 Score=24.86 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=23.2
Q ss_pred CCCCCCChHHHHHHHhhcCCChhhhhHhh
Q 025588 131 LPNATKGSDHLRDVFGHMGLSDKEIVVLS 159 (250)
Q Consensus 131 lP~~~~~~~~l~~~F~~~Gl~~~e~VaL~ 159 (250)
++....+..+|=++|+++.++.+||-++.
T Consensus 80 ~~g~~~~~~eLP~Rfrr~p~se~EiE~In 108 (112)
T PF10937_consen 80 LKGEYFDRSELPARFRRKPISEEEIEAIN 108 (112)
T ss_pred CCcceeeHHHcCHhHccCCCCHHHHHHHH
Confidence 33445567788899999999999999874
No 29
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=23.12 E-value=1.3e+02 Score=28.65 Aligned_cols=58 Identities=22% Similarity=0.259 Sum_probs=37.5
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCC--CCCCCCC----ChHHHHHHHhhcCCC----------hhhhhHhhccccc
Q 025588 107 VTGGPEIPFHPGRPDKSDPPPEG--RLPNATK----GSDHLRDVFGHMGLS----------DKEIVVLSGGHTL 164 (250)
Q Consensus 107 ~~GGP~~~~~~GR~D~~~~~~~~--~lP~~~~----~~~~l~~~F~~~Gl~----------~~e~VaL~GaHti 164 (250)
.+|-..|..++||.|.+.-...+ .+|...+ .+.++.+.|+..|+. +.++..|+|+|.+
T Consensus 173 eAGa~~ISPfVgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~~~~~~~T~Im~ASfRn~~~v~~laG~d~~ 246 (391)
T PRK12309 173 EAGVTLISPFVGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYYKKFGYKTEVMGASFRNIGEIIELAGCDLL 246 (391)
T ss_pred HcCCCEEEeecchhhhhhhhccCCCccccccchHHHHHHHHHHHHHhcCCCcEEEecccCCHHHHHHHHCCCee
Confidence 35778899999999885543222 1343322 356677788887753 4667788888843
No 30
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=21.30 E-value=71 Score=23.41 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=17.2
Q ss_pred HHHHHHHhhcCCChhhhhHhhccc
Q 025588 139 DHLRDVFGHMGLSDKEIVVLSGGH 162 (250)
Q Consensus 139 ~~l~~~F~~~Gl~~~e~VaL~GaH 162 (250)
+.|-..|++.||+..+|-.|+-+.
T Consensus 11 DtLs~iF~~~gls~~dl~~v~~~~ 34 (85)
T PF04225_consen 11 DTLSTIFRRAGLSASDLYAVLEAD 34 (85)
T ss_dssp --HHHHHHHTT--HHHHHHHHHHG
T ss_pred CcHHHHHHHcCCCHHHHHHHHhcc
Confidence 568889999999999999887544
Done!