BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>025589
MKNGKQSLSSHMESPKLSLFLSLSRKPQLPFVTVATFGDTLINNLVLFFWLSSKIPISFM
GEEDPKKPEPAGPSTTAKTIEEHDDPVKEDKESVPNGNAQRTFLNPFAQPPQVRDPSVEK
SSWDSIDKGAALEQLEKEKKLALIKAWEENEKAKADNRAYKRLSAVGSWEKSKKAAVELQ
LKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAGKFRAAGF
IPRKFLSCFG

High Scoring Gene Products

Symbol, full name Information P value
AT3G61260 protein from Arabidopsis thaliana 7.8e-23
AT2G45820 protein from Arabidopsis thaliana 5.5e-22
P93788
Remorin
protein from Solanum tuberosum 7.0e-22
AT5G23750 protein from Arabidopsis thaliana 6.3e-21
AT3G48940 protein from Arabidopsis thaliana 9.2e-20
AT4G00670 protein from Arabidopsis thaliana 3.1e-12
AT2G02170 protein from Arabidopsis thaliana 3.2e-06

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  025589
        (250 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2098921 - symbol:AT3G61260 species:3702 "Arabi...   264  7.8e-23   1
TAIR|locus:2050704 - symbol:AT2G45820 "AT2G45820" species...   256  5.5e-22   1
UNIPROTKB|P93788 - symbol:P93788 "Remorin" species:4113 "...   255  7.0e-22   1
TAIR|locus:2172793 - symbol:AT5G23750 "AT5G23750" species...   246  6.3e-21   1
TAIR|locus:2101303 - symbol:AT3G48940 "AT3G48940" species...   235  9.2e-20   1
TAIR|locus:2127058 - symbol:AT4G00670 "AT4G00670" species...   164  3.1e-12   1
TAIR|locus:2051673 - symbol:AT2G02170 "AT2G02170" species...   131  3.2e-06   1


>TAIR|locus:2098921 [details] [associations]
            symbol:AT3G61260 species:3702 "Arabidopsis thaliana"
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0005886 "plasma membrane"
            evidence=IDA] [GO:0005773 "vacuole" evidence=IDA] [GO:0009506
            "plasmodesma" evidence=IDA] Pfam:PF03763 Pfam:PF03766 GO:GO:0005886
            GO:GO:0009506 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
            EMBL:AL137898 HOGENOM:HOG000239299 ProtClustDB:CLSN2683444
            InterPro:IPR005516 InterPro:IPR005518 EMBL:AF370346 EMBL:AY062977
            EMBL:AY088061 IPI:IPI00539947 PIR:T47918 RefSeq:NP_191685.1
            UniGene:At.21524 IntAct:Q9M2D8 STRING:Q9M2D8 PaxDb:Q9M2D8
            PRIDE:Q9M2D8 EnsemblPlants:AT3G61260.1 GeneID:825298
            KEGG:ath:AT3G61260 TAIR:At3g61260 eggNOG:NOG252013
            InParanoid:Q9M2D8 OMA:IADVHAW PhylomeDB:Q9M2D8
            Genevestigator:Q9M2D8 Uniprot:Q9M2D8
        Length = 212

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 70/205 (34%), Positives = 100/205 (48%)

Query:    51 LSSKIPISFMGEEDPKKPEPAGPSTTAKTIEEHDDPVKED--KESVPNGNAQRTFLNPFA 108
             L S+ P           P PA     A         V +D  +E + N   ++ F +  A
Sbjct:     9 LESESPAKVTTPAPADTPAPAPAEIPAPAPAPTPADVTKDVAEEKIQNPPPEQIFDDSKA 68

Query:   109 ----QPPQVRDPSVEKSSWDSIDKGXXXXXXXXXXXXXXXXXXXXNEKAKADNRAYKRLS 164
                 + P V +P+  K +  S+D+                     +EK+KA+N+A K+++
Sbjct:    69 LTVVEKP-VEEPAPAKPASASLDRDVKLADLSKEKRLSFVRAWEESEKSKAENKAEKKIA 127

Query:   165 AVGSWEKSKKAAVELQLXXXXXXXXXXXXXXXXRIKNKVADINMKAEEKRAIIEAQRGED 224
              V +WE SKKAAVE QL                R+KNKVA I+ +AEE+RA+IEA+RGED
Sbjct:   128 DVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNKVAAIHKEAEERRAMIEAKRGED 187

Query:   225 FLKVEETAGKFRAAGFIPRKFLSCF 249
              LK EETA K+RA G +P+    CF
Sbjct:   188 VLKAEETAAKYRATGIVPKATCGCF 212


>TAIR|locus:2050704 [details] [associations]
            symbol:AT2G45820 "AT2G45820" species:3702 "Arabidopsis
            thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005886
            "plasma membrane" evidence=ISM;IDA] [GO:0008150
            "biological_process" evidence=ND] [GO:0005515 "protein binding"
            evidence=IPI] Pfam:PF03763 Pfam:PF03766 GO:GO:0005886 EMBL:CP002685
            GenomeReviews:CT485783_GR EMBL:AC004665 EMBL:M25268 EMBL:AY045996
            EMBL:AY079329 IPI:IPI00539171 PIR:T02465 RefSeq:NP_182106.1
            UniGene:At.24530 IntAct:O80837 STRING:O80837 PaxDb:O80837
            PRIDE:O80837 ProMEX:O80837 EnsemblPlants:AT2G45820.1 GeneID:819190
            KEGG:ath:AT2G45820 TAIR:At2g45820 eggNOG:NOG288404
            HOGENOM:HOG000239299 InParanoid:O80837 OMA:AILSWEN PhylomeDB:O80837
            ProtClustDB:CLSN2683444 Genevestigator:O80837 InterPro:IPR005516
            InterPro:IPR005518 Uniprot:O80837
        Length = 190

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 62/188 (32%), Positives = 92/188 (48%)

Query:    62 EEDPKKPEPAGPSTTAKTIEEHDDPVKEDKESVPNGNAQRTFLNPFAQPPQVRDPSVEKS 121
             E+   K +   P+  A   E    PV+   E + N     +      + P + + + +K+
Sbjct:     4 EQKTSKVDVESPAVLAPAKEPTPAPVEVADEKIHNPPPVESKALAVVEKP-IEEHTPKKA 62

Query:   122 SWDSIDKGXXXXXXXXXXXXXXXXXXXXNEKAKADNRAYKRLSAVGSWEKSKKAAVELQL 181
             S  S D+                     +EK+KA+NRA K++S V +WE SKKAAVE QL
Sbjct:    63 SSGSADRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQL 122

Query:   182 XXXXXXXXXXXXXXXXRIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAGKFRAAGFI 241
                             ++KNKVA I+  AEEKRA++EA++GE+ LK EE   K+RA G +
Sbjct:   123 RKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRATGVV 182

Query:   242 PRKFLSCF 249
             P+    CF
Sbjct:   183 PKATCGCF 190


>UNIPROTKB|P93788 [details] [associations]
            symbol:P93788 "Remorin" species:4113 "Solanum tuberosum"
            [GO:0005886 "plasma membrane" evidence=IDA] [GO:0007267 "cell-cell
            signaling" evidence=NAS] [GO:0048032 "galacturonate binding"
            evidence=IDA] Pfam:PF03763 Pfam:PF03766 GO:GO:0005886 GO:GO:0006810
            GO:GO:0007267 InterPro:IPR005516 InterPro:IPR005518 EMBL:U72489
            PIR:T07780 KEGG:dosa:Os10t0503800-01 GO:GO:0048032 Uniprot:P93788
        Length = 198

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 68/194 (35%), Positives = 97/194 (50%)

Query:    64 DPKKPEPAGPSTTAKTIEEHDD--------PVKEDKESVPNGNAQRTFLNPFAQPPQVRD 115
             DP  P P GP    K +   +         P  E+KE  P+ +     +   A  P+   
Sbjct:    13 DPAPPAP-GPVEAPKEVVADEKAIVAPALPPPAEEKEK-PDDSKALVVVETKA--PE--- 65

Query:   116 PSVEKSSWDSIDKGXXXXXXXXXXXXXXXXXXXXNEKAKADNRAYKRLSAVGSWEKSKKA 175
             P+ EK    SID+                     +EK+KA+N+A K++SA+G+WE SKKA
Sbjct:    66 PADEKKE-GSIDRDAVLARVATEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKA 124

Query:   176 AVELQLXXXXXXXXXXXXXXXXRIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAGKF 235
              +E +L                ++KNK+A ++ +AEEKRA+IEA+RGED LK EE A K+
Sbjct:   125 NLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMIEAKRGEDLLKAEELAAKY 184

Query:   236 RAAGFIPRKFLSCF 249
             RA G  P+K L  F
Sbjct:   185 RATGTAPKKILGIF 198


>TAIR|locus:2172793 [details] [associations]
            symbol:AT5G23750 "AT5G23750" species:3702 "Arabidopsis
            thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0042546 "cell wall biogenesis" evidence=RCA]
            Pfam:PF03763 Pfam:PF03766 EMBL:CP002688 EMBL:AB005244
            InterPro:IPR005516 InterPro:IPR005518 EMBL:AF387006 EMBL:BT000016
            IPI:IPI00519664 RefSeq:NP_197764.1 UniGene:At.22829 IntAct:Q9FFA5
            PRIDE:Q9FFA5 EnsemblPlants:AT5G23750.1 GeneID:832440
            KEGG:ath:AT5G23750 TAIR:At5g23750 InParanoid:Q9FFA5 OMA:CKVENKA
            PhylomeDB:Q9FFA5 ProtClustDB:CLSN2686297 ArrayExpress:Q9FFA5
            Genevestigator:Q9FFA5 Uniprot:Q9FFA5
        Length = 202

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 48/98 (48%), Positives = 65/98 (66%)

Query:   151 EKAKADNRAYKRLSAVGSWEKSKKAAVELQLXXXXXXXXXXXXXXXXRIKNKVADINMKA 210
             EK K +N+A K+LS++GSWE +KKAAVE +L                ++KNK+A I+ +A
Sbjct:   104 EKCKVENKAEKKLSSIGSWENNKKAAVEAELKKMEEQLEKKKAEYVEQMKNKIAQIHKEA 163

Query:   211 EEKRAIIEAQRGEDFLKVEETAGKFRAAGFIPRKFLSC 248
             EEKRA+IEA+RGE+ LK EE A K+RA G  P+K   C
Sbjct:   164 EEKRAMIEAKRGEEILKAEELAAKYRATGTAPKKLFGC 201


>TAIR|locus:2101303 [details] [associations]
            symbol:AT3G48940 "AT3G48940" species:3702 "Arabidopsis
            thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005886
            "plasma membrane" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0048765 "root hair cell differentiation"
            evidence=RCA] Pfam:PF03763 Pfam:PF03766 EMBL:CP002686
            GenomeReviews:BA000014_GR EMBL:AL132967 HOGENOM:HOG000239299
            InterPro:IPR005516 InterPro:IPR005518 IPI:IPI00526150 PIR:T46136
            RefSeq:NP_190463.1 UniGene:At.53841 EnsemblPlants:AT3G48940.1
            GeneID:824055 KEGG:ath:AT3G48940 TAIR:At3g48940 eggNOG:NOG272280
            InParanoid:Q9SMT2 OMA:GAWENSK PhylomeDB:Q9SMT2
            ProtClustDB:CLSN2913484 Genevestigator:Q9SMT2 Uniprot:Q9SMT2
        Length = 175

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 47/99 (47%), Positives = 64/99 (64%)

Query:   151 EKAKADNRAYKRLSAVGSWEKSKKAAVELQLXXXXXXXXXXXXXXXXRIKNKVADINMKA 210
             EK+K +N+A K++S+VG+WE SKKA+VE +L                ++KNK+A I+ +A
Sbjct:    77 EKSKVENKAQKKISSVGAWENSKKASVEAELKKIEEQLNKKKAHYTEQMKNKIAQIHKEA 136

Query:   211 EEKRAIIEAQRGEDFLKVEETAGKFRAAGFIPRKFLSCF 249
             EEKRA+ EA+RGED LK EE A K+RA G  P K    F
Sbjct:   137 EEKRAMTEAKRGEDVLKAEEMAAKYRATGTAPTKLFGFF 175


>TAIR|locus:2127058 [details] [associations]
            symbol:AT4G00670 "AT4G00670" species:3702 "Arabidopsis
            thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005886
            "plasma membrane" evidence=ISM] Pfam:PF03763 EMBL:CP002687
            GenomeReviews:CT486007_GR InterPro:IPR005516 UniGene:At.25593
            EMBL:BT014759 EMBL:BT015948 IPI:IPI00526954 RefSeq:NP_191976.2
            UniGene:At.48814 PaxDb:Q6IDB4 PRIDE:Q6IDB4
            EnsemblPlants:AT4G00670.1 GeneID:828034 KEGG:ath:AT4G00670
            TAIR:At4g00670 OMA:KISHEAK PhylomeDB:Q6IDB4 Genevestigator:Q6IDB4
            Uniprot:Q6IDB4
        Length = 123

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 32/97 (32%), Positives = 55/97 (56%)

Query:   154 KADNRAYKRLSAVGSWEKSKKAAVELQLXXXXXXXXXXXXXXXXRIKNKVADINMKAEEK 213
             K +N+  K+L  +  WEK K   +E +L                +++N+ A ++ KA++K
Sbjct:    27 KVNNKTQKKLLDISGWEKKKTTKIESELARIQRKMDSKKMEKSEKLRNEKAAVHAKAQKK 86

Query:   214 RAIIEAQRGEDFLKVEETAGKFRAAGFIPRKF-LSCF 249
             +A ++ +R ++ L  EE A +F+AAG IP+K  LSCF
Sbjct:    87 KADVQTRRAQEILDAEEAAARFQAAGKIPKKSSLSCF 123


>TAIR|locus:2051673 [details] [associations]
            symbol:AT2G02170 "AT2G02170" species:3702 "Arabidopsis
            thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005886
            "plasma membrane" evidence=ISM;IDA] [GO:0008150
            "biological_process" evidence=ND] Pfam:PF03763 GO:GO:0005886
            EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC005936
            InterPro:IPR005516 HOGENOM:HOG000238733 EMBL:AF385733 EMBL:BT003022
            IPI:IPI00526082 PIR:G84433 RefSeq:NP_001077869.1 RefSeq:NP_027421.1
            UniGene:At.13362 PRIDE:Q9ZUM1 EnsemblPlants:AT2G02170.1
            EnsemblPlants:AT2G02170.2 GeneID:814748 KEGG:ath:AT2G02170
            TAIR:At2g02170 eggNOG:NOG267380 InParanoid:Q9ZUM1 OMA:MKTRREI
            PhylomeDB:Q9ZUM1 ProtClustDB:CLSN2687932 ArrayExpress:Q9ZUM1
            Genevestigator:Q9ZUM1 Uniprot:Q9ZUM1
        Length = 486

 Score = 131 (51.2 bits), Expect = 3.2e-06, P = 3.2e-06
 Identities = 32/99 (32%), Positives = 45/99 (45%)

Query:   151 EKAKADNRAYKRLSAVGSWEKSKKAAVELQLXXXXXXXXXXXXXXXXRIKNKVADINMKA 210
             EKAK   R  +    + +WE  +KA  E ++                R+  K+A I  KA
Sbjct:   384 EKAKHMARFRREEMKIQAWENHQKAKSEAEMKKTEVKVERIKGRAQDRLMKKLATIERKA 443

Query:   211 EEKRAIIEAQRGEDFLKVEETAGKFRAAGFIPRKFLSCF 249
             EEKRA  EA++     K E+ A + R  G +P    SCF
Sbjct:   444 EEKRAAAEAKKDHQAAKTEKQAEQIRRTGKVPSLLFSCF 482


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.130   0.371    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      250       214   0.00085  112 3  11 23  0.44    33
                                                     31  0.49    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  170 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.24u 0.20s 20.44t   Elapsed:  00:00:01
  Total cpu time:  20.24u 0.20s 20.44t   Elapsed:  00:00:01
  Start:  Fri May 10 16:25:20 2013   End:  Fri May 10 16:25:21 2013

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