BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025589
         (250 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9M2D8|Y3126_ARATH Uncharacterized protein At3g61260 OS=Arabidopsis thaliana
           GN=At3g61260 PE=1 SV=1
          Length = 212

 Score =  154 bits (389), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 78/137 (56%), Positives = 105/137 (76%)

Query: 113 VRDPSVEKSSWDSIDKGAALEQLEKEKKLALIKAWEENEKAKADNRAYKRLSAVGSWEKS 172
           V +P+  K +  S+D+   L  L KEK+L+ ++AWEE+EK+KA+N+A K+++ V +WE S
Sbjct: 76  VEEPAPAKPASASLDRDVKLADLSKEKRLSFVRAWEESEKSKAENKAEKKIADVHAWENS 135

Query: 173 KKAAVELQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETA 232
           KKAAVE QLKK EE+ EKKKAEY ER+KNKVA I+ +AEE+RA+IEA+RGED LK EETA
Sbjct: 136 KKAAVEAQLKKIEEQLEKKKAEYAERMKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETA 195

Query: 233 GKFRAAGFIPRKFLSCF 249
            K+RA G +P+    CF
Sbjct: 196 AKYRATGIVPKATCGCF 212


>sp|P93788|REMO_SOLTU Remorin OS=Solanum tuberosum PE=1 SV=1
          Length = 198

 Score =  147 bits (372), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 74/125 (59%), Positives = 101/125 (80%)

Query: 125 SIDKGAALEQLEKEKKLALIKAWEENEKAKADNRAYKRLSAVGSWEKSKKAAVELQLKKF 184
           SID+ A L ++  EK+++LIKAWEE+EK+KA+N+A K++SA+G+WE SKKA +E +LKK 
Sbjct: 74  SIDRDAVLARVATEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKM 133

Query: 185 EEKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAGKFRAAGFIPRK 244
           EE+ EKKKAEY E++KNK+A ++ +AEEKRA+IEA+RGED LK EE A K+RA G  P+K
Sbjct: 134 EEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGTAPKK 193

Query: 245 FLSCF 249
            L  F
Sbjct: 194 ILGIF 198


>sp|O80837|REMO_ARATH Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1
          Length = 190

 Score =  132 bits (331), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/130 (58%), Positives = 98/130 (75%)

Query: 120 KSSWDSIDKGAALEQLEKEKKLALIKAWEENEKAKADNRAYKRLSAVGSWEKSKKAAVEL 179
           K+S  S D+   L  LEKEKK + IKAWEE+EK+KA+NRA K++S V +WE SKKAAVE 
Sbjct: 61  KASSGSADRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEA 120

Query: 180 QLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAGKFRAAG 239
           QL+K EEK EKKKA+Y E++KNKVA I+  AEEKRA++EA++GE+ LK EE   K+RA G
Sbjct: 121 QLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRATG 180

Query: 240 FIPRKFLSCF 249
            +P+    CF
Sbjct: 181 VVPKATCGCF 190


>sp|D4DHX2|FCJ1_TRIVH Formation of crista junctions protein 1 OS=Trichophyton verrucosum
           (strain HKI 0517) GN=FCJ1 PE=3 SV=1
          Length = 683

 Score = 32.3 bits (72), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 22/170 (12%)

Query: 54  KIPI-----SFMGEEDPKKPEPAGPSTTAKTIEEHDDPVKEDKESVPNGNAQRTFLNPFA 108
           ++P+     S +  ++P+KP  A  S+        DDP+ ++   + NG      +N   
Sbjct: 283 RVPVTDTKKSTVSLDEPRKPAVATVSSIEPLAALQDDPIIQELTKIVNGLI--AVINADE 340

Query: 109 QPPQVRDPSVEKSSWDSIDKGAALEQLEKEKKLALIKAWEENEKA-----KADNRAYKRL 163
              ++  P + K+  D +  G   EQ+   KK A I A EE + A     ++     +R+
Sbjct: 341 SASKLAAP-IAKAKDDFLKLG---EQISSIKKEAHIAAQEEIKNAHKEFERSATELVRRI 396

Query: 164 SAVGSWEKSKKAAVELQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEK 213
             V S E     A E + ++FE + EK    Y+E+IK +V   N  AE++
Sbjct: 397 DEVRSEE-----AAEYR-EEFETEREKLANSYQEKIKTEVERANAVAEQR 440


>sp|O82197|VP321_ARATH Vacuolar protein sorting-associated protein 32 homolog 1
           OS=Arabidopsis thaliana GN=VPS32.1 PE=1 SV=1
          Length = 213

 Score = 32.0 bits (71), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 13/90 (14%)

Query: 116 PSVEKSSWDSIDK-GAALEQLEKEKKLALIKAWEENEKAKADNRAYKRLSAVGSWEKSKK 174
           P  E S+  ++DK    LE LEK++ + L KA  E EKAK  +RA           K+K+
Sbjct: 10  PKQETSTLQTLDKLNETLEMLEKKENVLLKKATGEVEKAKEFSRA-----------KNKR 58

Query: 175 AAVE-LQLKKFEEKWEKKKAEYEERIKNKV 203
           AA++ L+ K+  E+  ++   ++ RI +++
Sbjct: 59  AAIQCLKRKRLYEQQVEQLGNFQLRIHDQM 88


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.128    0.364 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,644,402
Number of Sequences: 539616
Number of extensions: 4061929
Number of successful extensions: 19115
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 636
Number of HSP's that attempted gapping in prelim test: 17272
Number of HSP's gapped (non-prelim): 1795
length of query: 250
length of database: 191,569,459
effective HSP length: 115
effective length of query: 135
effective length of database: 129,513,619
effective search space: 17484338565
effective search space used: 17484338565
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)