Query 025589
Match_columns 250
No_of_seqs 137 out of 210
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 07:22:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025589.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025589hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03763 Remorin_C: Remorin, C 100.0 4E-38 8.7E-43 252.9 14.8 110 137-246 2-111 (111)
2 PF03763 Remorin_C: Remorin, C 97.0 0.017 3.7E-07 47.0 11.6 81 136-216 23-103 (111)
3 PF03766 Remorin_N: Remorin, N 95.9 0.0036 7.9E-08 46.5 1.3 26 110-135 31-57 (57)
4 PRK09174 F0F1 ATP synthase sub 83.2 32 0.00069 30.5 12.1 27 191-217 139-165 (204)
5 PRK13454 F0F1 ATP synthase sub 75.7 37 0.00081 29.2 9.9 32 186-217 112-143 (181)
6 KOG4661 Hsp27-ERE-TATA-binding 75.0 20 0.00043 37.9 9.3 75 145-219 619-706 (940)
7 TIGR01933 hflK HflK protein. H 74.7 30 0.00064 30.5 9.3 50 187-236 164-213 (261)
8 cd03404 Band_7_HflK Band_7_Hfl 68.2 46 0.001 29.3 9.0 50 188-237 192-241 (266)
9 PRK00247 putative inner membra 65.7 1.3E+02 0.0028 30.1 12.4 15 143-157 290-304 (429)
10 PRK13455 F0F1 ATP synthase sub 65.3 86 0.0019 26.7 9.9 53 183-235 105-158 (184)
11 PRK14475 F0F1 ATP synthase sub 62.2 96 0.0021 26.1 9.9 48 188-235 93-141 (167)
12 PRK07353 F0F1 ATP synthase sub 60.7 86 0.0019 25.1 9.6 10 145-154 43-52 (140)
13 PRK14471 F0F1 ATP synthase sub 57.6 1.1E+02 0.0024 25.4 9.6 15 142-156 43-57 (164)
14 PRK06231 F0F1 ATP synthase sub 57.1 1.4E+02 0.003 26.4 9.9 32 194-225 137-168 (205)
15 PRK06569 F0F1 ATP synthase sub 57.0 1.3E+02 0.0029 26.1 10.0 6 27-32 2-7 (155)
16 PRK14474 F0F1 ATP synthase sub 56.8 1.2E+02 0.0026 27.6 9.7 75 166-240 30-107 (250)
17 PRK08475 F0F1 ATP synthase sub 55.2 1.3E+02 0.0029 25.5 9.7 15 188-202 101-115 (167)
18 KOG2412 Nuclear-export-signal 55.0 2.8E+02 0.006 29.2 13.1 62 164-225 213-275 (591)
19 PF12513 SUV3_C: Mitochondrial 51.7 14 0.0003 25.7 2.3 23 40-62 6-28 (49)
20 PF10376 Mei5: Double-strand r 50.4 88 0.0019 28.5 7.8 56 163-219 130-185 (221)
21 TIGR03321 alt_F1F0_F0_B altern 49.7 1.9E+02 0.0042 25.8 10.6 72 166-237 30-104 (246)
22 PF00430 ATP-synt_B: ATP synth 49.0 1.2E+02 0.0027 23.4 8.6 26 189-214 83-108 (132)
23 PRK05759 F0F1 ATP synthase sub 47.3 1.5E+02 0.0033 24.0 9.9 24 191-214 90-113 (156)
24 PRK13453 F0F1 ATP synthase sub 46.9 1.8E+02 0.0039 24.7 10.6 72 166-237 43-117 (173)
25 PF07352 Phage_Mu_Gam: Bacteri 46.8 1E+02 0.0022 25.6 7.1 41 147-187 14-54 (149)
26 CHL00118 atpG ATP synthase CF0 45.8 1.8E+02 0.0038 24.3 12.0 40 186-225 103-142 (156)
27 KOG0163 Myosin class VI heavy 45.7 4.4E+02 0.0095 29.5 12.9 18 191-208 954-971 (1259)
28 PRK09173 F0F1 ATP synthase sub 45.6 1.7E+02 0.0038 24.1 9.9 24 203-226 100-123 (159)
29 KOG3654 Uncharacterized CH dom 42.6 69 0.0015 33.5 6.4 42 169-221 397-440 (708)
30 PRK10930 FtsH protease regulat 41.9 1.3E+02 0.0028 29.7 8.0 57 180-236 253-309 (419)
31 PRK13460 F0F1 ATP synthase sub 41.5 2.2E+02 0.0047 24.1 10.6 72 166-237 41-115 (173)
32 PRK14472 F0F1 ATP synthase sub 40.9 2.2E+02 0.0048 24.0 12.1 17 35-51 19-35 (175)
33 COG5269 ZUO1 Ribosome-associat 40.7 1.8E+02 0.004 28.5 8.6 60 154-213 233-292 (379)
34 PRK00409 recombination and DNA 40.6 4.2E+02 0.0091 28.2 11.9 37 176-212 552-588 (782)
35 PRK06569 F0F1 ATP synthase sub 40.3 2.5E+02 0.0054 24.4 10.4 65 155-220 39-103 (155)
36 COG0711 AtpF F0F1-type ATP syn 40.3 2.3E+02 0.005 24.0 9.7 10 44-53 15-24 (161)
37 TIGR01069 mutS2 MutS2 family p 39.9 4.9E+02 0.011 27.7 13.3 15 148-162 509-523 (771)
38 TIGR03319 YmdA_YtgF conserved 39.7 4.2E+02 0.0091 26.8 15.2 15 158-172 70-84 (514)
39 PRK13428 F0F1 ATP synthase sub 39.2 3.9E+02 0.0084 26.4 12.1 33 192-224 88-120 (445)
40 PF11559 ADIP: Afadin- and alp 38.7 1.3E+02 0.0029 24.6 6.5 24 167-190 121-144 (151)
41 PRK09174 F0F1 ATP synthase sub 38.6 2.8E+02 0.0062 24.6 10.6 81 154-235 81-161 (204)
42 KOG0996 Structural maintenance 37.6 5.5E+02 0.012 29.5 12.5 82 157-243 535-617 (1293)
43 PF09755 DUF2046: Uncharacteri 37.2 4E+02 0.0087 25.9 11.2 67 150-216 91-157 (310)
44 KOG1962 B-cell receptor-associ 36.5 2.9E+02 0.0062 25.5 8.8 42 171-213 150-191 (216)
45 cd07663 BAR_SNX5 The Bin/Amphi 36.1 3.4E+02 0.0074 24.8 13.4 40 134-175 122-161 (218)
46 KOG1103 Predicted coiled-coil 36.1 4.5E+02 0.0097 26.8 10.6 47 167-213 155-211 (561)
47 PF12127 YdfA_immunity: SigmaW 36.0 78 0.0017 30.7 5.3 25 172-196 229-253 (316)
48 PRK13665 hypothetical protein; 36.0 82 0.0018 30.5 5.5 26 172-197 234-259 (316)
49 PRK06568 F0F1 ATP synthase sub 35.5 2.9E+02 0.0063 23.8 9.0 62 180-241 75-141 (154)
50 PF11875 DUF3395: Domain of un 34.8 1.5E+02 0.0033 25.2 6.4 38 187-224 10-47 (151)
51 KOG0577 Serine/threonine prote 33.1 3.3E+02 0.0072 29.7 9.7 81 145-225 816-900 (948)
52 TIGR01144 ATP_synt_b ATP synth 32.4 2.7E+02 0.0058 22.5 9.9 37 188-224 78-114 (147)
53 PRK12704 phosphodiesterase; Pr 31.6 5.6E+02 0.012 26.0 15.2 9 163-171 81-89 (520)
54 PF11554 DUF3232: Protein of u 30.7 3.8E+02 0.0083 23.7 9.0 60 152-214 50-109 (152)
55 CHL00019 atpF ATP synthase CF0 29.8 3.5E+02 0.0077 23.0 12.1 39 188-226 107-145 (184)
56 PRK07352 F0F1 ATP synthase sub 29.1 3.5E+02 0.0076 22.8 12.1 82 155-237 48-129 (174)
57 PRK08404 V-type ATP synthase s 28.4 3.1E+02 0.0067 21.9 6.9 44 174-217 49-92 (103)
58 PF08232 Striatin: Striatin fa 28.3 3.1E+02 0.0067 22.9 7.1 51 145-197 21-71 (134)
59 PRK11029 FtsH protease regulat 27.9 2.2E+02 0.0047 27.3 6.9 18 204-221 262-279 (334)
60 KOG4055 Uncharacterized conser 27.7 2.8E+02 0.006 25.6 7.1 29 196-224 109-137 (213)
61 KOG4326 Mitochondrial F1F0-ATP 27.6 2E+02 0.0044 22.9 5.5 26 156-181 31-56 (81)
62 COG1390 NtpE Archaeal/vacuolar 25.5 3.9E+02 0.0085 23.7 7.6 11 193-203 46-56 (194)
63 PRK03963 V-type ATP synthase s 25.5 3.8E+02 0.0083 22.7 7.3 26 177-202 19-44 (198)
64 PF10211 Ax_dynein_light: Axon 25.4 4.6E+02 0.01 22.9 13.0 97 124-234 78-181 (189)
65 PRK13461 F0F1 ATP synthase sub 25.3 3.9E+02 0.0085 22.0 9.9 15 35-49 6-20 (159)
66 PF04888 SseC: Secretion syste 25.2 1.4E+02 0.003 27.2 4.9 19 222-240 39-57 (306)
67 PF05672 MAP7: MAP7 (E-MAP-115 25.0 5E+02 0.011 23.2 16.4 34 112-147 5-38 (171)
68 PF10211 Ax_dynein_light: Axon 24.7 4.8E+02 0.01 22.9 9.7 41 199-239 139-179 (189)
69 PRK13455 F0F1 ATP synthase sub 24.4 4.4E+02 0.0096 22.4 13.0 35 179-213 123-157 (184)
70 PRK08476 F0F1 ATP synthase sub 24.0 4.1E+02 0.009 21.9 11.7 79 155-234 36-114 (141)
71 PF12777 MT: Microtubule-bindi 23.2 6E+02 0.013 23.9 8.8 8 235-242 109-116 (344)
72 COG4864 Uncharacterized protei 22.4 1.8E+02 0.0039 27.9 5.1 25 172-196 233-257 (328)
73 PRK06568 F0F1 ATP synthase sub 22.1 5.2E+02 0.011 22.3 9.9 16 182-197 59-74 (154)
74 PRK02292 V-type ATP synthase s 22.1 4.8E+02 0.011 22.0 8.6 13 154-166 20-32 (188)
75 PF12856 Apc9: Anaphase-promot 21.8 71 0.0015 26.1 2.1 22 139-160 44-65 (100)
76 PF09731 Mitofilin: Mitochondr 21.8 8E+02 0.017 24.4 16.3 12 141-152 267-278 (582)
77 PF05103 DivIVA: DivIVA protei 21.6 34 0.00073 26.9 0.2 36 197-232 63-98 (131)
78 PRK06231 F0F1 ATP synthase sub 21.5 5.7E+02 0.012 22.6 15.6 34 176-209 141-174 (205)
79 TIGR00570 cdk7 CDK-activating 21.2 7.6E+02 0.016 23.9 11.8 22 138-159 116-137 (309)
80 TIGR01932 hflC HflC protein. H 21.2 3.3E+02 0.0072 25.3 6.7 8 46-53 11-18 (317)
81 PRK00409 recombination and DNA 21.1 1E+03 0.022 25.4 15.3 21 186-206 551-571 (782)
82 PF12128 DUF3584: Protein of u 21.1 1.2E+03 0.025 26.0 13.2 32 158-189 664-695 (1201)
No 1
>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides. The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].
Probab=100.00 E-value=4e-38 Score=252.85 Aligned_cols=110 Identities=48% Similarity=0.667 Sum_probs=107.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHhHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025589 137 KEKKLALIKAWEENEKAKADNRAYKRLSAVGSWEKSKKAAVELQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRAI 216 (250)
Q Consensus 137 ~EkreSka~AWEEAEkAK~~nRyqREEAkI~AWEN~QKAKAEAeMRKiE~KLEKKRA~a~EKmkNKIA~ahKkAEEkRA~ 216 (250)
.+.++++++|||++|++|+++||+|++++|++|||+||++||++|+++|++||+||++++|||+|+|+.||++||++|++
T Consensus 2 ~~~~~a~a~aWe~ae~aK~~~r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra~ 81 (111)
T PF03763_consen 2 KEEVEAKADAWEEAEKAKINNRYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRAA 81 (111)
T ss_pred cHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhchhHhHHHHHHHHHhhcCCCCCccc
Q 025589 217 IEAQRGEDFLKVEETAGKFRAAGFIPRKFL 246 (250)
Q Consensus 217 AEAkR~ee~lKaeEKA~kiRaTGklPsscf 246 (250)
++++|+++++++.++|++||+||++|++||
T Consensus 82 aea~r~~~~~k~~ekA~~~R~tG~~P~~~f 111 (111)
T PF03763_consen 82 AEARRGEEIAKAEEKAAKIRATGKVPSKCF 111 (111)
T ss_pred HHHHHhhHHHhHHHHHHHHHhCCCCCcccC
Confidence 999999999999999999999999999875
No 2
>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides. The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].
Probab=97.00 E-value=0.017 Score=47.03 Aligned_cols=81 Identities=27% Similarity=0.294 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHhHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025589 136 EKEKKLALIKAWEENEKAKADNRAYKRLSAVGSWEKSKKAAVELQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRA 215 (250)
Q Consensus 136 e~EkreSka~AWEEAEkAK~~nRyqREEAkI~AWEN~QKAKAEAeMRKiE~KLEKKRA~a~EKmkNKIA~ahKkAEEkRA 215 (250)
..++.++.|.+||..+++|+....++.|.++.-=-..---+..-.|..+..+.|.+|+.+..+-.+++..+..+|.-.|+
T Consensus 23 r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra~aea~r~~~~~k~~ekA~~~R~ 102 (111)
T PF03763_consen 23 RYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRAAAEARRGEEIAKAEEKAAKIRA 102 (111)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHh
Confidence 34556899999999999999999999998754222222223444566678899999999999999999999999998886
Q ss_pred H
Q 025589 216 I 216 (250)
Q Consensus 216 ~ 216 (250)
.
T Consensus 103 t 103 (111)
T PF03763_consen 103 T 103 (111)
T ss_pred C
Confidence 4
No 3
>PF03766 Remorin_N: Remorin, N-terminal region ; InterPro: IPR005518 Remorin binds both simple and complex galaturonides. The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].
Probab=95.90 E-value=0.0036 Score=46.48 Aligned_cols=26 Identities=42% Similarity=0.542 Sum_probs=21.4
Q ss_pred CCC-CCCCCcccCCCCcchhhHHHHHH
Q 025589 110 PPQ-VRDPSVEKSSWDSIDKGAALEQL 135 (250)
Q Consensus 110 ~~~-~~~~~~~~~~~gS~drDa~LarV 135 (250)
+.+ +.+++.+|+++||+|||++|++|
T Consensus 31 Vek~~~epa~eK~s~GS~dRDa~LA~v 57 (57)
T PF03766_consen 31 VEKKVPEPAEEKPSEGSIDRDAALARV 57 (57)
T ss_pred eeccCCCccccccCCCcchhhhhhhcC
Confidence 344 36788899999999999999985
No 4
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=83.18 E-value=32 Score=30.52 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025589 191 KKAEYEERIKNKVADINMKAEEKRAII 217 (250)
Q Consensus 191 KRA~a~EKmkNKIA~ahKkAEEkRA~A 217 (250)
.+..+.+.....++.++..-+..|..+
T Consensus 139 ~~~~a~~ea~~~l~~Ae~~I~~ek~~A 165 (204)
T PRK09174 139 ERAAIEASLEKKLKEAEARIAAIKAKA 165 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444443333333333
No 5
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=75.66 E-value=37 Score=29.20 Aligned_cols=32 Identities=22% Similarity=0.191 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025589 186 EKWEKKKAEYEERIKNKVADINMKAEEKRAII 217 (250)
Q Consensus 186 ~KLEKKRA~a~EKmkNKIA~ahKkAEEkRA~A 217 (250)
...+..+..+-......++.++..-+..|..+
T Consensus 112 ~~~~~~~~~A~~e~~~~~aea~~~I~~~k~~a 143 (181)
T PRK13454 112 AELDVAIAKADAEIAAKAAESEKRIAEIRAGA 143 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555544444444444
No 6
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=74.98 E-value=20 Score=37.91 Aligned_cols=75 Identities=17% Similarity=0.267 Sum_probs=51.7
Q ss_pred HhHHHHHHHHHHHHHHHhhhhHHhHHHhHHHHHHHHHhhhH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025589 145 KAWEENEKAKADNRAYKRLSAVGSWEKSKKAAVELQLKKFE-------------EKWEKKKAEYEERIKNKVADINMKAE 211 (250)
Q Consensus 145 ~AWEEAEkAK~~nRyqREEAkI~AWEN~QKAKAEAeMRKiE-------------~KLEKKRA~a~EKmkNKIA~ahKkAE 211 (250)
..-+-.|...+..+-.+++..-.+||-..++..++++-++| +.||++|.+.++.-...-.+||++-+
T Consensus 619 r~Re~eer~RirE~rerEqR~~a~~ERee~eRl~~erlrle~qRQrLERErmErERLEreRM~ve~eRr~eqeRihreRe 698 (940)
T KOG4661|consen 619 RRREAEERQRIREEREREQRRKAAVEREELERLKAERLRLERQRQRLERERMERERLERERMKVEEERRDEQERIHRERE 698 (940)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhHH
Confidence 34455577888888888888899999999888877776665 34555555566655666666666666
Q ss_pred HHHHHHHH
Q 025589 212 EKRAIIEA 219 (250)
Q Consensus 212 EkRA~AEA 219 (250)
+-|-+-+.
T Consensus 699 elRrqqet 706 (940)
T KOG4661|consen 699 ELRRQQET 706 (940)
T ss_pred HHhhccce
Confidence 66554443
No 7
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=74.74 E-value=30 Score=30.51 Aligned_cols=50 Identities=12% Similarity=0.070 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHh
Q 025589 187 KWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAGKFR 236 (250)
Q Consensus 187 KLEKKRA~a~EKmkNKIA~ahKkAEEkRA~AEAkR~ee~lKaeEKA~kiR 236 (250)
..++.++++...-...+..++..|+..+..|++.+..+..+++-.|..++
T Consensus 164 ~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~ 213 (261)
T TIGR01933 164 DEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFT 213 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 33666666655555556677777777777777777777776665555544
No 8
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=68.18 E-value=46 Score=29.31 Aligned_cols=50 Identities=20% Similarity=0.145 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHhh
Q 025589 188 WEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAGKFRA 237 (250)
Q Consensus 188 LEKKRA~a~EKmkNKIA~ahKkAEEkRA~AEAkR~ee~lKaeEKA~kiRa 237 (250)
.++.++++...-...++.++..|+..+..+++.+.....+++-.|..|+.
T Consensus 192 ~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a~~~~~ 241 (266)
T cd03404 192 RERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGEAARFES 241 (266)
T ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45555555444445668888888889999999999888888877777663
No 9
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=65.68 E-value=1.3e+02 Score=30.09 Aligned_cols=15 Identities=20% Similarity=0.193 Sum_probs=6.3
Q ss_pred HHHhHHHHHHHHHHH
Q 025589 143 LIKAWEENEKAKADN 157 (250)
Q Consensus 143 ka~AWEEAEkAK~~n 157 (250)
....|-+-++.|-..
T Consensus 290 ~~~~~~~~~~~~~~~ 304 (429)
T PRK00247 290 QRAQYREKQKEKKAF 304 (429)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334454444443333
No 10
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=65.26 E-value=86 Score=26.67 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHhHHH-HHHHHH
Q 025589 183 KFEEKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFLKVE-ETAGKF 235 (250)
Q Consensus 183 KiE~KLEKKRA~a~EKmkNKIA~ahKkAEEkRA~AEAkR~ee~lKae-EKA~ki 235 (250)
..+...++.+..+.......++.++...+..|..+...-..++.... +.|.++
T Consensus 105 ~a~~~~e~~~~~a~~ea~~~~~~A~~~I~~ek~~a~~~l~~~i~~lA~~~a~ki 158 (184)
T PRK13455 105 EAQAAAEQAKADLEASIARRLAAAEDQIASAEAAAVKAVRDRAVSVAVAAAADV 158 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555566666666665555555444444443332 444443
No 11
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=62.16 E-value=96 Score=26.12 Aligned_cols=48 Identities=19% Similarity=0.175 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHhHHH-HHHHHH
Q 025589 188 WEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFLKVE-ETAGKF 235 (250)
Q Consensus 188 LEKKRA~a~EKmkNKIA~ahKkAEEkRA~AEAkR~ee~lKae-EKA~ki 235 (250)
.+..++.+.+.....+..++...+..|..+...-..++.... +.|.++
T Consensus 93 ~~~~~~~A~~ea~~~~~~A~~~I~~e~~~a~~el~~e~~~lAv~~A~ki 141 (167)
T PRK14475 93 EAEAKEKLEEQIKRRAEMAERKIAQAEAQAAADVKAAAVDLAAQAAETV 141 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444445554444445444444444443332 444443
No 12
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=60.67 E-value=86 Score=25.11 Aligned_cols=10 Identities=10% Similarity=0.043 Sum_probs=4.7
Q ss_pred HhHHHHHHHH
Q 025589 145 KAWEENEKAK 154 (250)
Q Consensus 145 ~AWEEAEkAK 154 (250)
...++++..+
T Consensus 43 ~~l~~Ae~~~ 52 (140)
T PRK07353 43 TNRAEAKERL 52 (140)
T ss_pred HHHHHHHHHH
Confidence 4455554443
No 13
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=57.57 E-value=1.1e+02 Score=25.40 Aligned_cols=15 Identities=20% Similarity=0.366 Sum_probs=7.7
Q ss_pred HHHHhHHHHHHHHHH
Q 025589 142 ALIKAWEENEKAKAD 156 (250)
Q Consensus 142 Ska~AWEEAEkAK~~ 156 (250)
.-....++++..+-.
T Consensus 43 ~I~~~l~~A~~~~~e 57 (164)
T PRK14471 43 SIKNALASAEEARKE 57 (164)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333456666655443
No 14
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=57.14 E-value=1.4e+02 Score=26.42 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhH
Q 025589 194 EYEERIKNKVADINMKAEEKRAIIEAQRGEDF 225 (250)
Q Consensus 194 ~a~EKmkNKIA~ahKkAEEkRA~AEAkR~ee~ 225 (250)
.+-+.....+..++...+..++.+..+-..++
T Consensus 137 ~A~~eae~ii~~A~~~Ie~Ek~~a~~~Lk~ei 168 (205)
T PRK06231 137 EANRQANLIIFQARQEIEKERRELKEQLQKES 168 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444433333333
No 15
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=57.00 E-value=1.3e+02 Score=26.12 Aligned_cols=6 Identities=33% Similarity=0.706 Sum_probs=2.4
Q ss_pred CCCCee
Q 025589 27 PQLPFV 32 (250)
Q Consensus 27 ~~~~~~ 32 (250)
||+-+.
T Consensus 2 PQfd~~ 7 (155)
T PRK06569 2 PQFDIA 7 (155)
T ss_pred CCCchh
Confidence 444433
No 16
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=56.80 E-value=1.2e+02 Score=27.64 Aligned_cols=75 Identities=9% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHhHHHhHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHhhcCC
Q 025589 166 VGSWEKSKKAAVELQLKKFE---EKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAGKFRAAGF 240 (250)
Q Consensus 166 I~AWEN~QKAKAEAeMRKiE---~KLEKKRA~a~EKmkNKIA~ahKkAEEkRA~AEAkR~ee~lKaeEKA~kiRaTGk 240 (250)
|...=+..+.++...|...| .+.++.+..|.+++.+--..++.+-+..+..+++.+.+-..++.+.+..++...+
T Consensus 30 i~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~ 107 (250)
T PRK14474 30 IIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWL 107 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 17
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=55.21 E-value=1.3e+02 Score=25.53 Aligned_cols=15 Identities=13% Similarity=0.036 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 025589 188 WEKKKAEYEERIKNK 202 (250)
Q Consensus 188 LEKKRA~a~EKmkNK 202 (250)
.++.+..++++.+++
T Consensus 101 Ae~~~~~ii~~A~~e 115 (167)
T PRK08475 101 AYILTQKIEKQTKDD 115 (167)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 18
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=54.97 E-value=2.8e+02 Score=29.20 Aligned_cols=62 Identities=21% Similarity=0.249 Sum_probs=34.0
Q ss_pred hhHHhHHHhHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhchhH
Q 025589 164 SAVGSWEKSKKAAVELQLKKFEEKWEKKKAEYEE-RIKNKVADINMKAEEKRAIIEAQRGEDF 225 (250)
Q Consensus 164 AkI~AWEN~QKAKAEAeMRKiE~KLEKKRA~a~E-KmkNKIA~ahKkAEEkRA~AEAkR~ee~ 225 (250)
..+..=+..++--||.+-++-++.+-+|+-.-++ +++.+++.+..++++.|..++.++..+.
T Consensus 213 ~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~d~~~~~~eqekiR~~eekqeee~ke~e~~~~k~~ 275 (591)
T KOG2412|consen 213 RERKERSEEKREEAERKRRAHQEELRQKEDEEAELQEQEKIRAEEEKQEEERKEAEEQAEKEV 275 (591)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444444444444444444444433333 3467777777778888887776655443
No 19
>PF12513 SUV3_C: Mitochondrial degradasome RNA helicase subunit C terminal; InterPro: IPR022192 This domain family is found in bacteria and eukaryotes, and is approximately 50 amino acids in length. The family is found in association with PF00271 from PFAM. The yeast mitochondrial degradosome (mtEXO) is an NTP-dependent exoribonuclease involved in mitochondrial RNA metabolism. mtEXO is made up of two subunits: an RNase (DSS1) and an RNA helicase (SUV3). These co-purify with mitochondrial ribosomes. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 3RC8_A 3RC3_A.
Probab=51.70 E-value=14 Score=25.68 Aligned_cols=23 Identities=35% Similarity=0.641 Sum_probs=17.6
Q ss_pred hhhhHHHHHHHhccCCcccccCC
Q 025589 40 TLINNLVLFFWLSSKIPISFMGE 62 (250)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~ 62 (250)
++-.-+.+|+|||-+.|-.|.+.
T Consensus 6 ~~hk~l~lYlWLs~Rfp~~F~d~ 28 (49)
T PF12513_consen 6 SLHKVLDLYLWLSYRFPDVFPDR 28 (49)
T ss_dssp HHHHHHHHHHHHHCC-TTTSTTH
T ss_pred HHHHHHHHHHHHHHHcccccCCH
Confidence 34567889999999999988753
No 20
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=50.37 E-value=88 Score=28.47 Aligned_cols=56 Identities=20% Similarity=0.168 Sum_probs=46.5
Q ss_pred hhhHHhHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025589 163 LSAVGSWEKSKKAAVELQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRAIIEA 219 (250)
Q Consensus 163 EAkI~AWEN~QKAKAEAeMRKiE~KLEKKRA~a~EKmkNKIA~ahKkAEEkRA~AEA 219 (250)
+-.++.|+. .|++.+.+++..++.|.+....-+.+++|.+..++..-.++|...+.
T Consensus 130 ~~~~~el~~-ek~kL~~q~~e~~e~lr~L~~~k~~r~Kn~~~~Lq~lI~Kwr~~~q~ 185 (221)
T PF10376_consen 130 ELKQQELEE-EKRKLEKQVDEKEEELRRLKLVKQYRSKNDLEQLQSLIKKWRSASQE 185 (221)
T ss_pred hhHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 455677766 67788899999999999999999999999999999999999876644
No 21
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=49.68 E-value=1.9e+02 Score=25.82 Aligned_cols=72 Identities=15% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHhHHHhHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHhh
Q 025589 166 VGSWEKSKKAAVELQLKKFE---EKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAGKFRA 237 (250)
Q Consensus 166 I~AWEN~QKAKAEAeMRKiE---~KLEKKRA~a~EKmkNKIA~ahKkAEEkRA~AEAkR~ee~lKaeEKA~kiRa 237 (250)
|...=...+.+.+..+...| .+.+..++.|.+++.+--..++.+-++.+..+++.+.+-...+.+.|..++.
T Consensus 30 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~ 104 (246)
T TIGR03321 30 ILDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIRE 104 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 22
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=49.01 E-value=1.2e+02 Score=23.45 Aligned_cols=26 Identities=19% Similarity=0.274 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025589 189 EKKKAEYEERIKNKVADINMKAEEKR 214 (250)
Q Consensus 189 EKKRA~a~EKmkNKIA~ahKkAEEkR 214 (250)
+.++..+.+.....+..++...+..+
T Consensus 83 ~~~~~ea~~~~~~~~~~a~~~i~~e~ 108 (132)
T PF00430_consen 83 EEILAEAEKEAERIIEQAEAEIEQEK 108 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333343444444444443333333
No 23
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=47.34 E-value=1.5e+02 Score=24.03 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025589 191 KKAEYEERIKNKVADINMKAEEKR 214 (250)
Q Consensus 191 KRA~a~EKmkNKIA~ahKkAEEkR 214 (250)
.+..+-+.....+..++...+..+
T Consensus 90 ~~~~a~~ea~~~~~~a~~~i~~e~ 113 (156)
T PRK05759 90 AKAEAEAEAARIKAQAQAEIEQER 113 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 24
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=46.86 E-value=1.8e+02 Score=24.67 Aligned_cols=72 Identities=10% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHhHHHhHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHhh
Q 025589 166 VGSWEKSKKAAVELQLKKFE---EKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAGKFRA 237 (250)
Q Consensus 166 I~AWEN~QKAKAEAeMRKiE---~KLEKKRA~a~EKmkNKIA~ahKkAEEkRA~AEAkR~ee~lKaeEKA~kiRa 237 (250)
|...=...+......|...+ .+.+..++.|-+++.+--..++.+-++.+..++..+.+....+.+.+..+..
T Consensus 43 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~ 117 (173)
T PRK13453 43 LKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIE 117 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 25
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=46.77 E-value=1e+02 Score=25.57 Aligned_cols=41 Identities=15% Similarity=0.271 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHHhHHHhHHHHHHHHHhhhHHH
Q 025589 147 WEENEKAKADNRAYKRLSAVGSWEKSKKAAVELQLKKFEEK 187 (250)
Q Consensus 147 WEEAEkAK~~nRyqREEAkI~AWEN~QKAKAEAeMRKiE~K 187 (250)
.-..+.+.+.+.++.+.+.|..|-..+.+.....+..++.-
T Consensus 14 ~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~ 54 (149)
T PF07352_consen 14 ELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGL 54 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777777777777777777776666666655543
No 26
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=45.83 E-value=1.8e+02 Score=24.26 Aligned_cols=40 Identities=13% Similarity=0.104 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhH
Q 025589 186 EKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDF 225 (250)
Q Consensus 186 ~KLEKKRA~a~EKmkNKIA~ahKkAEEkRA~AEAkR~ee~ 225 (250)
...+..++.+-+.....+..++...+..|..+...-..++
T Consensus 103 ~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~~v 142 (156)
T CHL00118 103 EIVENELKQAQKYIDSLLNEATKQLEAQKEKALKSLEEQV 142 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444433333333
No 27
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=45.75 E-value=4.4e+02 Score=29.49 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025589 191 KKAEYEERIKNKVADINM 208 (250)
Q Consensus 191 KRA~a~EKmkNKIA~ahK 208 (250)
+|+++.-.++.|++..++
T Consensus 954 k~~k~e~e~kRK~eEeqr 971 (1259)
T KOG0163|consen 954 KRAKAEMETKRKAEEEQR 971 (1259)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 28
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=45.61 E-value=1.7e+02 Score=24.13 Aligned_cols=24 Identities=4% Similarity=-0.183 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHh
Q 025589 203 VADINMKAEEKRAIIEAQRGEDFL 226 (250)
Q Consensus 203 IA~ahKkAEEkRA~AEAkR~ee~l 226 (250)
+..++...+..|..+...-..++.
T Consensus 100 ~~~a~~~I~~ek~~a~~el~~~~~ 123 (159)
T PRK09173 100 NKLAEQKIAQAETDAINAVRSSAV 123 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 29
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=42.60 E-value=69 Score=33.51 Aligned_cols=42 Identities=38% Similarity=0.425 Sum_probs=24.3
Q ss_pred HHHhHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025589 169 WEKSKKAAVELQLKK--FEEKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQR 221 (250)
Q Consensus 169 WEN~QKAKAEAeMRK--iE~KLEKKRA~a~EKmkNKIA~ahKkAEEkRA~AEAkR 221 (250)
.|..|+-.-|++.|| +|.+.|.+|.+ ++++|||-|+-.|..+
T Consensus 397 lekqqrraeear~rkqqleae~e~kree-----------arrkaeeer~~keee~ 440 (708)
T KOG3654|consen 397 LEKQQRRAEEARRRKQQLEAEKEQKREE-----------ARRKAEEERAPKEEEV 440 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhhHhhhcchhhhh
Confidence 345555555666655 46666666654 4566666666554443
No 30
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=41.92 E-value=1.3e+02 Score=29.71 Aligned_cols=57 Identities=14% Similarity=0.092 Sum_probs=41.9
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHh
Q 025589 180 QLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAGKFR 236 (250)
Q Consensus 180 eMRKiE~KLEKKRA~a~EKmkNKIA~ahKkAEEkRA~AEAkR~ee~lKaeEKA~kiR 236 (250)
++.+.++..++.+.++...-..-+..|+..|+...+.|+|.+...+++++-.|+.|.
T Consensus 253 ~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~ 309 (419)
T PRK10930 253 DAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFA 309 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 334444555677777766666677889999999999999999999888886665543
No 31
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=41.53 E-value=2.2e+02 Score=24.07 Aligned_cols=72 Identities=11% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHhHHHhHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHhh
Q 025589 166 VGSWEKSKKAAVELQLKKFE---EKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAGKFRA 237 (250)
Q Consensus 166 I~AWEN~QKAKAEAeMRKiE---~KLEKKRA~a~EKmkNKIA~ahKkAEEkRA~AEAkR~ee~lKaeEKA~kiRa 237 (250)
|...=+..+.+....+...+ .+.+..+++|.+++.+--..++.+-++.+..++..+.+....+.+.+.++..
T Consensus 41 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~ 115 (173)
T PRK13460 41 ILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKD 115 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 32
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=40.86 E-value=2.2e+02 Score=24.00 Aligned_cols=17 Identities=12% Similarity=0.091 Sum_probs=8.4
Q ss_pred eehhhhhhhHHHHHHHh
Q 025589 35 ATFGDTLINNLVLFFWL 51 (250)
Q Consensus 35 ~~~~~~~~~~~~~~~~~ 51 (250)
.+|.-++||=+||+|.|
T Consensus 19 ~~~~~~~i~Flil~~lL 35 (175)
T PRK14472 19 GLIFWTAVTFVIVLLIL 35 (175)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555566555444433
No 33
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=40.71 E-value=1.8e+02 Score=28.51 Aligned_cols=60 Identities=22% Similarity=0.231 Sum_probs=34.7
Q ss_pred HHHHHHHHhhhhHHhHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025589 154 KADNRAYKRLSAVGSWEKSKKAAVELQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEK 213 (250)
Q Consensus 154 K~~nRyqREEAkI~AWEN~QKAKAEAeMRKiE~KLEKKRA~a~EKmkNKIA~ahKkAEEk 213 (250)
|...--.+++.+|..||-.--|.+++.....-..-++.|++..-+-.--++.+.++|.|.
T Consensus 233 K~fkEqeK~~k~~rkWereagar~~a~aa~k~kae~k~kae~ea~a~asa~a~kkkaKE~ 292 (379)
T COG5269 233 KSFKEQEKEMKKIRKWEREAGARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEV 292 (379)
T ss_pred hhHHHHHHHHHHHhccchhhhhhHHHHHHHhhhhHHHhHHHHHHHHhhhhHHHHHhHHHH
Confidence 444555677888999998877665554443322223555555555444555555555443
No 34
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=40.64 E-value=4.2e+02 Score=28.16 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=16.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025589 176 AVELQLKKFEEKWEKKKAEYEERIKNKVADINMKAEE 212 (250)
Q Consensus 176 KAEAeMRKiE~KLEKKRA~a~EKmkNKIA~ahKkAEE 212 (250)
..+.+.++++.+-++.+.++.+++..-++.+.+.+++
T Consensus 552 ~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~ 588 (782)
T PRK00409 552 ELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADE 588 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444
No 35
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=40.29 E-value=2.5e+02 Score=24.45 Aligned_cols=65 Identities=18% Similarity=0.194 Sum_probs=35.3
Q ss_pred HHHHHHHhhhhHHhHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025589 155 ADNRAYKRLSAVGSWEKSKKAAVELQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQ 220 (250)
Q Consensus 155 ~~nRyqREEAkI~AWEN~QKAKAEAeMRKiE~KLEKKRA~a~EKmkNKIA~ahKkAEEkRA~AEAk 220 (250)
+..|.++-...|..=++ .+..|+......|..|..-|+++.+--......+...|+..|+.+++.
T Consensus 39 Le~R~~~I~~~L~~Ae~-~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~ 103 (155)
T PRK06569 39 FNNRQTNIQDNITQADT-LTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQD 103 (155)
T ss_pred HHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433 344555555556666666666665555555555666666666555554
No 36
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=40.28 E-value=2.3e+02 Score=23.99 Aligned_cols=10 Identities=30% Similarity=0.936 Sum_probs=4.5
Q ss_pred HHHHHHHhcc
Q 025589 44 NLVLFFWLSS 53 (250)
Q Consensus 44 ~~~~~~~~~~ 53 (250)
|+++|+|+-.
T Consensus 15 ~F~ill~ll~ 24 (161)
T COG0711 15 AFVILLWLLK 24 (161)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 37
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=39.94 E-value=4.9e+02 Score=27.68 Aligned_cols=15 Identities=7% Similarity=-0.206 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHh
Q 025589 148 EENEKAKADNRAYKR 162 (250)
Q Consensus 148 EEAEkAK~~nRyqRE 162 (250)
+..+..++..+.+++
T Consensus 509 ~~~~~~~li~~L~~~ 523 (771)
T TIGR01069 509 FKEEINVLIEKLSAL 523 (771)
T ss_pred hHHHHHHHHHHHHHH
Confidence 444444444444443
No 38
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=39.67 E-value=4.2e+02 Score=26.83 Aligned_cols=15 Identities=13% Similarity=0.173 Sum_probs=7.1
Q ss_pred HHHHhhhhHHhHHHh
Q 025589 158 RAYKRLSAVGSWEKS 172 (250)
Q Consensus 158 RyqREEAkI~AWEN~ 172 (250)
.|+..+.++...|+.
T Consensus 70 el~~~e~rL~qrE~r 84 (514)
T TIGR03319 70 ELKERRNELQRLERR 84 (514)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333335555555543
No 39
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=39.22 E-value=3.9e+02 Score=26.35 Aligned_cols=33 Identities=12% Similarity=0.045 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 025589 192 KAEYEERIKNKVADINMKAEEKRAIIEAQRGED 224 (250)
Q Consensus 192 RA~a~EKmkNKIA~ahKkAEEkRA~AEAkR~ee 224 (250)
++.+.+.....+..++...+..|..+..+-..+
T Consensus 88 ~~~A~~ea~~i~~~a~~~Ie~ek~~a~~elr~e 120 (445)
T PRK13428 88 RAQADAEAERIKVQGARQVQLLRAQLTRQLRLE 120 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444443333333
No 40
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=38.75 E-value=1.3e+02 Score=24.59 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=9.4
Q ss_pred HhHHHhHHHHHHHHHhhhHHHHHH
Q 025589 167 GSWEKSKKAAVELQLKKFEEKWEK 190 (250)
Q Consensus 167 ~AWEN~QKAKAEAeMRKiE~KLEK 190 (250)
..|-...+++.+.+|||.|.++++
T Consensus 121 k~~~~~~~tq~~~e~rkke~E~~k 144 (151)
T PF11559_consen 121 KNQLQQRKTQYEHELRKKEREIEK 144 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444333333
No 41
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=38.59 E-value=2.8e+02 Score=24.58 Aligned_cols=81 Identities=16% Similarity=0.195 Sum_probs=52.5
Q ss_pred HHHHHHHHhhhhHHhHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHH
Q 025589 154 KADNRAYKRLSAVGSWEKSKKAAVELQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAG 233 (250)
Q Consensus 154 K~~nRyqREEAkI~AWEN~QKAKAEAeMRKiE~KLEKKRA~a~EKmkNKIA~ahKkAEEkRA~AEAkR~ee~lKaeEKA~ 233 (250)
=+..|.++-...|..=++ .+..|+..+...|.+|..-|.++.+-+.+-...++..+++.+..+++.-......++....
T Consensus 81 vLe~R~~~I~~~L~~Ae~-~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I~ 159 (204)
T PRK09174 81 IIETRRDRIAQDLDQAAR-LKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIA 159 (204)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566665665555444 3556777788888888888888888887777777777777776666554444444444443
Q ss_pred HH
Q 025589 234 KF 235 (250)
Q Consensus 234 ki 235 (250)
..
T Consensus 160 ~e 161 (204)
T PRK09174 160 AI 161 (204)
T ss_pred HH
Confidence 33
No 42
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=37.61 E-value=5.5e+02 Score=29.53 Aligned_cols=82 Identities=13% Similarity=0.268 Sum_probs=48.7
Q ss_pred HHHHHhhhhHHhHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhchhHhHHHHHHHHH
Q 025589 157 NRAYKRLSAVGSWEKSKKAAVELQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRA-IIEAQRGEDFLKVEETAGKF 235 (250)
Q Consensus 157 nRyqREEAkI~AWEN~QKAKAEAeMRKiE~KLEKKRA~a~EKmkNKIA~ahKkAEEkRA-~AEAkR~ee~lKaeEKA~ki 235 (250)
+.+++....|.+|+..= -.-+.+++.++.+|+++|....... ..+...+.+++|+++ ....+-.+++++ .--.+
T Consensus 535 ~~~~e~~~~l~~~k~~l-~~~k~e~~~~~k~l~~~~~e~~~~~-~~~~~~rqrveE~ks~~~~~~s~~kVl~---al~r~ 609 (1293)
T KOG0996|consen 535 ESLKEKKTELDDLKEEL-PSLKQELKEKEKELPKLRKEERNLK-SQLNKLRQRVEEAKSSLSSSRSRNKVLD---ALMRL 609 (1293)
T ss_pred HHHHHHHHHHHHHHHhh-hhHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhHHHH---HHHHH
Confidence 34555556666664321 1223466777777887777665544 445566677777777 444444555543 34455
Q ss_pred hhcCCCCC
Q 025589 236 RAAGFIPR 243 (250)
Q Consensus 236 RaTGklPs 243 (250)
...|++|+
T Consensus 610 kesG~i~G 617 (1293)
T KOG0996|consen 610 KESGRIPG 617 (1293)
T ss_pred HHcCCCCc
Confidence 67899987
No 43
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=37.19 E-value=4e+02 Score=25.90 Aligned_cols=67 Identities=10% Similarity=0.113 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhhhhHHhHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025589 150 NEKAKADNRAYKRLSAVGSWEKSKKAAVELQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRAI 216 (250)
Q Consensus 150 AEkAK~~nRyqREEAkI~AWEN~QKAKAEAeMRKiE~KLEKKRA~a~EKmkNKIA~ahKkAEEkRA~ 216 (250)
.++.-+...|+++|.-++-==..+-.+...+--.+|..||+.....+.+++.+|..+.+.-..+...
T Consensus 91 keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~ 157 (310)
T PF09755_consen 91 KEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEE 157 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3455566688888877775444455555566666778888888888888888888876544444333
No 44
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=36.49 E-value=2.9e+02 Score=25.50 Aligned_cols=42 Identities=24% Similarity=0.360 Sum_probs=28.3
Q ss_pred HhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025589 171 KSKKAAVELQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEK 213 (250)
Q Consensus 171 N~QKAKAEAeMRKiE~KLEKKRA~a~EKmkNKIA~ahKkAEEk 213 (250)
+.+.++..+++.+++.+||++ ...+|+.+++.....+.+|+.
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~-~~~Le~~~~~~~al~Kq~e~~ 191 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKK-QKKLEKAQKKVDALKKQSEGL 191 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHc
Confidence 344577777788888877754 455667777777777766654
No 45
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=36.11 E-value=3.4e+02 Score=24.82 Aligned_cols=40 Identities=15% Similarity=0.104 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHhHHHhHHH
Q 025589 134 QLEKEKKLALIKAWEENEKAKADNRAYKRLSAVGSWEKSKKA 175 (250)
Q Consensus 134 rVe~EkreSka~AWEEAEkAK~~nRyqREEAkI~AWEN~QKA 175 (250)
+.---.|......|+.++++-...|++ ..+|..||..++.
T Consensus 122 K~ll~rR~ral~~~e~A~~~L~KaR~k--~kev~~aE~~~~e 161 (218)
T cd07663 122 KDLLYRRARALADYENSNKALDKARLK--SKDVKQAEAHQQE 161 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHH
Confidence 333334445556788888777766653 5557777777664
No 46
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=36.08 E-value=4.5e+02 Score=26.82 Aligned_cols=47 Identities=30% Similarity=0.295 Sum_probs=37.0
Q ss_pred HhHHHhHHHHHHHHHhhhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Q 025589 167 GSWEKSKKAAVELQLKKFEEKWEKKKAEYE----------ERIKNKVADINMKAEEK 213 (250)
Q Consensus 167 ~AWEN~QKAKAEAeMRKiE~KLEKKRA~a~----------EKmkNKIA~ahKkAEEk 213 (250)
..+|-.++-|+|-+-+|+|+.||..|.+-. .++.+|++....+|++-
T Consensus 155 iEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~mLilEcKka~~KaaEegqKA~ei 211 (561)
T KOG1103|consen 155 IEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLMLILECKKALLKAAEEGQKAEEI 211 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 468889999999999999999987665421 46778888888888765
No 47
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=35.98 E-value=78 Score=30.71 Aligned_cols=25 Identities=16% Similarity=0.088 Sum_probs=15.6
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHH
Q 025589 172 SKKAAVELQLKKFEEKWEKKKAEYE 196 (250)
Q Consensus 172 ~QKAKAEAeMRKiE~KLEKKRA~a~ 196 (250)
+|-.+|||.++-.+.|.|.+|+-+.
T Consensus 229 Lq~dQAeADk~iAqAkAEeRRA~Av 253 (316)
T PF12127_consen 229 LQTDQAEADKRIAQAKAEERRAMAV 253 (316)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777776666666666665544
No 48
>PRK13665 hypothetical protein; Provisional
Probab=35.98 E-value=82 Score=30.50 Aligned_cols=26 Identities=15% Similarity=0.084 Sum_probs=18.1
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHH
Q 025589 172 SKKAAVELQLKKFEEKWEKKKAEYEE 197 (250)
Q Consensus 172 ~QKAKAEAeMRKiE~KLEKKRA~a~E 197 (250)
+|..+|||.++-.+.|.|.+|+.+.-
T Consensus 234 Lq~dQAEADk~iAqAkAEeRRAmAvA 259 (316)
T PRK13665 234 LQTDQAEADKRIAQAKAEERRAMAVA 259 (316)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788777777777777766553
No 49
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=35.47 E-value=2.9e+02 Score=23.81 Aligned_cols=62 Identities=11% Similarity=0.126 Sum_probs=29.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhchhHhH-HHHHHHHHhhcCCC
Q 025589 180 QLKKFEEKWEKKKAEYEERIKNKVA----DINMKAEEKRAIIEAQRGEDFLK-VEETAGKFRAAGFI 241 (250)
Q Consensus 180 eMRKiE~KLEKKRA~a~EKmkNKIA----~ahKkAEEkRA~AEAkR~ee~lK-aeEKA~kiRaTGkl 241 (250)
-++..+..-++.+.++.++....+. .+++..+..|..+-..=+.++.. +-+.|.+|-..-++
T Consensus 75 Ii~~A~~~a~~~~~ea~~eA~~ea~r~~~~A~~~Ie~Ek~~Al~elr~eva~Lav~iAsk~~~~~~~ 141 (154)
T PRK06568 75 MIEESNEVTKKIIQEKTKEIEEFLEHKKSDAIQLIQNQKSTASKELQDEFCDEVIKLVSEYFQSVKL 141 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444444455555555555555443 33333444443333333333333 33666776555444
No 50
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=34.81 E-value=1.5e+02 Score=25.16 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 025589 187 KWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGED 224 (250)
Q Consensus 187 KLEKKRA~a~EKmkNKIA~ahKkAEEkRA~AEAkR~ee 224 (250)
++++.|....+.+..+.+.+....+.|+..++.++..|
T Consensus 10 ~~~~~r~~~~~~~~~~r~eA~~~~~lm~~~a~r~~~~E 47 (151)
T PF11875_consen 10 EIEEQREKNKEEIAEKRAEAESAIELMKETAERKQRKE 47 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555555555555555444
No 51
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=33.06 E-value=3.3e+02 Score=29.70 Aligned_cols=81 Identities=15% Similarity=0.227 Sum_probs=60.3
Q ss_pred HhHHHHHHHHHHHHHHHhhhhHHhHHHhHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025589 145 KAWEENEKAKADNRAYKRLSAVGSWEKSKKAAVELQLKKF----EEKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQ 220 (250)
Q Consensus 145 ~AWEEAEkAK~~nRyqREEAkI~AWEN~QKAKAEAeMRKi----E~KLEKKRA~a~EKmkNKIA~ahKkAEEkRA~AEAk 220 (250)
+.|.++|---.....+.+..-+.+.++.-|+.++++..+. |..+--.|+-..+||-.+++.++..--+.--+...+
T Consensus 816 de~qe~E~q~l~~ql~qEle~l~ayq~k~k~~~e~q~~re~~ele~rvslrra~lEqkieeE~~~~~~~Rserir~l~er 895 (948)
T KOG0577|consen 816 DEAQEAECQVLREQLEQELELLNAYQSKIKMQAEEQHERELRELEQRVSLRRALLEQKIEEELAQLQTERSERIRSLLER 895 (948)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccchHHHHHHhhh
Confidence 6788899888999999999999999999999888776554 444445688888888888887765544433355555
Q ss_pred hchhH
Q 025589 221 RGEDF 225 (250)
Q Consensus 221 R~ee~ 225 (250)
+..++
T Consensus 896 ~~~e~ 900 (948)
T KOG0577|consen 896 HAREI 900 (948)
T ss_pred hHHHH
Confidence 54443
No 52
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=32.41 E-value=2.7e+02 Score=22.46 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 025589 188 WEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGED 224 (250)
Q Consensus 188 LEKKRA~a~EKmkNKIA~ahKkAEEkRA~AEAkR~ee 224 (250)
.+..++.+-+....-+..++...+..|..+...-..+
T Consensus 78 ~~~~~~~a~~e~~~~~~~a~~~i~~e~~~a~~~l~~~ 114 (147)
T TIGR01144 78 LEEAKAEAREEREKIKAQARAEIEAEKEQAREELRKQ 114 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444333333
No 53
>PRK12704 phosphodiesterase; Provisional
Probab=31.62 E-value=5.6e+02 Score=25.96 Aligned_cols=9 Identities=22% Similarity=0.213 Sum_probs=3.9
Q ss_pred hhhHHhHHH
Q 025589 163 LSAVGSWEK 171 (250)
Q Consensus 163 EAkI~AWEN 171 (250)
+.++..-|+
T Consensus 81 e~~L~qrE~ 89 (520)
T PRK12704 81 RNELQKLEK 89 (520)
T ss_pred HHHHHHHHH
Confidence 444444443
No 54
>PF11554 DUF3232: Protein of unknown function (DUF3232); InterPro: IPR021618 This bacterial family of proteins has no known function. ; PDB: 2RDC_A.
Probab=30.67 E-value=3.8e+02 Score=23.71 Aligned_cols=60 Identities=10% Similarity=0.154 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhhhhHHhHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025589 152 KAKADNRAYKRLSAVGSWEKSKKAAVELQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKR 214 (250)
Q Consensus 152 kAK~~nRyqREEAkI~AWEN~QKAKAEAeMRKiE~KLEKKRA~a~EKmkNKIA~ahKkAEEkR 214 (250)
-.++-.+.-++|..|+.|-+..-. .+.|-+-++|++-|..+++-+-..+..++|-|+..-
T Consensus 50 ~~~Y~~~V~~mE~~l~t~rfrleg---eeYRd~vE~LDr~RtnaH~a~ISd~kIlNR~aek~~ 109 (152)
T PF11554_consen 50 FKEYVLIVYRMEDQLQTWRFRLEG---EEYRDLVEELDRTRTNAHNAAISDCKILNRMAEKEN 109 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTS-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 467778888999999999987654 578888899999999999999999999999887543
No 55
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=29.75 E-value=3.5e+02 Score=23.02 Aligned_cols=39 Identities=10% Similarity=-0.050 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHh
Q 025589 188 WEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFL 226 (250)
Q Consensus 188 LEKKRA~a~EKmkNKIA~ahKkAEEkRA~AEAkR~ee~l 226 (250)
.+...+.+-+.....+..++...+..+..+...-..++.
T Consensus 107 ~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~l~~ei~ 145 (184)
T CHL00019 107 KENLINQAKEDLERLENYKNETIRFEQQRAINQVRQQVF 145 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444433
No 56
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=29.06 E-value=3.5e+02 Score=22.77 Aligned_cols=82 Identities=12% Similarity=0.005 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhHHhHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHH
Q 025589 155 ADNRAYKRLSAVGSWEKSKKAAVELQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAGK 234 (250)
Q Consensus 155 ~~nRyqREEAkI~AWEN~QKAKAEAeMRKiE~KLEKKRA~a~EKmkNKIA~ahKkAEEkRA~AEAkR~ee~lKaeEKA~k 234 (250)
+.+|-++-...|..=+ ..+..|+..+...+.+|+.-|.++.+-+..--..+.+..++.+..+++.-.....++......
T Consensus 48 l~~R~~~I~~~l~~A~-~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~ 126 (174)
T PRK07352 48 LEERREAILQALKEAE-ERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSA 126 (174)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hhh
Q 025589 235 FRA 237 (250)
Q Consensus 235 iRa 237 (250)
-+.
T Consensus 127 e~~ 129 (174)
T PRK07352 127 EQE 129 (174)
T ss_pred HHH
No 57
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=28.36 E-value=3.1e+02 Score=21.88 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025589 174 KAAVELQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRAII 217 (250)
Q Consensus 174 KAKAEAeMRKiE~KLEKKRA~a~EKmkNKIA~ahKkAEEkRA~A 217 (250)
+..|..-+.+.....+..|..++..+++.++.+-..|.++...+
T Consensus 49 ~~eA~~ile~Ak~eie~Ek~~a~~elk~eia~L~~~a~~k~~~a 92 (103)
T PRK08404 49 EEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKVKAEENFETA 92 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 58
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=28.27 E-value=3.1e+02 Score=22.85 Aligned_cols=51 Identities=24% Similarity=0.315 Sum_probs=39.4
Q ss_pred HhHHHHHHHHHHHHHHHhhhhHHhHHHhHHHHHHHHHhhhHHHHHHHHHHHHH
Q 025589 145 KAWEENEKAKADNRAYKRLSAVGSWEKSKKAAVELQLKKFEEKWEKKKAEYEE 197 (250)
Q Consensus 145 ~AWEEAEkAK~~nRyqREEAkI~AWEN~QKAKAEAeMRKiE~KLEKKRA~a~E 197 (250)
.+|| -|++....|.-..|....+.||+++.- -..++-+|-.|-+.|+++..
T Consensus 21 ~~We-iERaEmkarIa~LEGE~r~~e~l~~dL-~rrIkMLE~aLkqER~k~~~ 71 (134)
T PF08232_consen 21 NQWE-IERAEMKARIAFLEGERRGQENLKKDL-KRRIKMLEYALKQERAKYKK 71 (134)
T ss_pred HHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhc
Confidence 3787 467888888888899999999988764 56677778777777777654
No 59
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=27.85 E-value=2.2e+02 Score=27.30 Aligned_cols=18 Identities=17% Similarity=0.113 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 025589 204 ADINMKAEEKRAIIEAQR 221 (250)
Q Consensus 204 A~ahKkAEEkRA~AEAkR 221 (250)
+.+.+.|...||..+|.+
T Consensus 262 AeA~~~a~i~~aegeA~a 279 (334)
T PRK11029 262 AEAERQGRIMRGEGDAEA 279 (334)
T ss_pred HHHHHHHHHHHhhhHHHH
Confidence 334444444444444433
No 60
>KOG4055 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.67 E-value=2.8e+02 Score=25.64 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 025589 196 EERIKNKVADINMKAEEKRAIIEAQRGED 224 (250)
Q Consensus 196 ~EKmkNKIA~ahKkAEEkRA~AEAkR~ee 224 (250)
.+-|+.++..-++.||++-|.-.++|..+
T Consensus 109 daefq~r~ek~~kaaEeKTaKKRaKRqk~ 137 (213)
T KOG4055|consen 109 DAEFQIRLEKNQKAAEEKTAKKRAKRQKK 137 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555544444444433
No 61
>KOG4326 consensus Mitochondrial F1F0-ATP synthase, subunit e [Energy production and conversion]
Probab=27.60 E-value=2e+02 Score=22.90 Aligned_cols=26 Identities=8% Similarity=0.031 Sum_probs=20.8
Q ss_pred HHHHHHhhhhHHhHHHhHHHHHHHHH
Q 025589 156 DNRAYKRLSAVGSWEKSKKAAVELQL 181 (250)
Q Consensus 156 ~nRyqREEAkI~AWEN~QKAKAEAeM 181 (250)
.++......+|..|+.++||.+.|++
T Consensus 31 ~~~l~~~~e~~Rei~a~eKav~da~~ 56 (81)
T KOG4326|consen 31 LRQLREYHEDIREIDAHEKAVADAEE 56 (81)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhHHH
Confidence 45666678899999999999987754
No 62
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=25.52 E-value=3.9e+02 Score=23.70 Aligned_cols=11 Identities=9% Similarity=0.175 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 025589 193 AEYEERIKNKV 203 (250)
Q Consensus 193 A~a~EKmkNKI 203 (250)
..+..++.++.
T Consensus 46 ~~~~~~~~~ea 56 (194)
T COG1390 46 EEILRKAEKEA 56 (194)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 63
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=25.45 E-value=3.8e+02 Score=22.68 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=11.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHH
Q 025589 177 VELQLKKFEEKWEKKKAEYEERIKNK 202 (250)
Q Consensus 177 AEAeMRKiE~KLEKKRA~a~EKmkNK 202 (250)
++.-+.....+.++.+.++.++....
T Consensus 19 a~~il~~A~~~a~~i~~~a~~~a~~~ 44 (198)
T PRK03963 19 IEYILEEAQKEAEKIKEEARKRAESK 44 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 64
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=25.39 E-value=4.6e+02 Score=22.93 Aligned_cols=97 Identities=19% Similarity=0.275 Sum_probs=54.0
Q ss_pred CcchhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHhHHHhH-------HHHHHHHHhhhHHHHHHHHHHHH
Q 025589 124 DSIDKGAALEQLEKEKKLALIKAWEENEKAKADNRAYKRLSAVGSWEKSK-------KAAVELQLKKFEEKWEKKKAEYE 196 (250)
Q Consensus 124 gS~drDa~LarVe~EkreSka~AWEEAEkAK~~nRyqREEAkI~AWEN~Q-------KAKAEAeMRKiE~KLEKKRA~a~ 196 (250)
.-..|...|.+|..+-+.. ++ +|+..-..-.++-..+ +...+.++..++.+.+....+ +
T Consensus 78 ~C~ERGlLL~rvrde~~~~-l~------------~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~-~ 143 (189)
T PF10211_consen 78 DCPERGLLLLRVRDEYRMT-LD------------AYQTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQ-V 143 (189)
T ss_pred CcHHHhHHHHHHHHHHHHH-HH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 3566777888887665443 22 2322222222222222 334444555555444444333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHH
Q 025589 197 ERIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAGK 234 (250)
Q Consensus 197 EKmkNKIA~ahKkAEEkRA~AEAkR~ee~lKaeEKA~k 234 (250)
..+.+++..+++..++.++..+.++.+++......-..
T Consensus 144 ~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~q 181 (189)
T PF10211_consen 144 QELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQ 181 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888888888887777776554443333
No 65
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=25.27 E-value=3.9e+02 Score=22.04 Aligned_cols=15 Identities=33% Similarity=0.510 Sum_probs=7.5
Q ss_pred eehhhhhhhHHHHHH
Q 025589 35 ATFGDTLINNLVLFF 49 (250)
Q Consensus 35 ~~~~~~~~~~~~~~~ 49 (250)
.||.-++||=+||||
T Consensus 6 ~~~~~~~inF~il~~ 20 (159)
T PRK13461 6 PTIIATIINFIILLL 20 (159)
T ss_pred HHHHHHHHHHHHHHH
Confidence 355556664444443
No 66
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=25.18 E-value=1.4e+02 Score=27.21 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=11.7
Q ss_pred chhHhHHHHHHHHHhhcCC
Q 025589 222 GEDFLKVEETAGKFRAAGF 240 (250)
Q Consensus 222 ~ee~lKaeEKA~kiRaTGk 240 (250)
.++..+..+++++.+++|-
T Consensus 39 ~~~~~e~~~kaeeaqK~Gi 57 (306)
T PF04888_consen 39 AEEIEEAQEKAEEAQKAGI 57 (306)
T ss_pred HHHHHHHHHHHHHHHhcCh
Confidence 3445556677777777754
No 67
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=24.99 E-value=5e+02 Score=23.19 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=20.2
Q ss_pred CCCCCCcccCCCCcchhhHHHHHHHHHHHHHHHHhH
Q 025589 112 QVRDPSVEKSSWDSIDKGAALEQLEKEKKLALIKAW 147 (250)
Q Consensus 112 ~~~~~~~~~~~~gS~drDa~LarVe~EkreSka~AW 147 (250)
..+.++..+++.|.+|-+.+ .++-.+++ ..+..+
T Consensus 5 ~~~~~~~~K~saGTtdaEEA-tkiLAEkR-RlAReQ 38 (171)
T PF05672_consen 5 AEPSPASGKPSAGTTDAEEA-TKILAEKR-RLAREQ 38 (171)
T ss_pred CCCCCCCCCCCCCCCCHHHH-HHHHHHHH-HHHHHH
Confidence 34556777888888888764 44444443 333444
No 68
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=24.69 E-value=4.8e+02 Score=22.85 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHhhcC
Q 025589 199 IKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAGKFRAAG 239 (250)
Q Consensus 199 mkNKIA~ahKkAEEkRA~AEAkR~ee~lKaeEKA~kiRaTG 239 (250)
+..+++.+..+.+......++.+..+..+-.+....+++++
T Consensus 139 L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~ 179 (189)
T PF10211_consen 139 LEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQN 179 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444555555555544
No 69
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=24.43 E-value=4.4e+02 Score=22.37 Aligned_cols=35 Identities=11% Similarity=0.233 Sum_probs=22.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025589 179 LQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEK 213 (250)
Q Consensus 179 AeMRKiE~KLEKKRA~a~EKmkNKIA~ahKkAEEk 213 (250)
.-+.+.+..++..|.+++..++..+..+--.+-++
T Consensus 123 ~~~~~A~~~I~~ek~~a~~~l~~~i~~lA~~~a~k 157 (184)
T PRK13455 123 RRLAAAEDQIASAEAAAVKAVRDRAVSVAVAAAAD 157 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556777777777777777776655544444
No 70
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=23.96 E-value=4.1e+02 Score=21.89 Aligned_cols=79 Identities=14% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhHHhHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHH
Q 025589 155 ADNRAYKRLSAVGSWEKSKKAAVELQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAGK 234 (250)
Q Consensus 155 ~~nRyqREEAkI~AWEN~QKAKAEAeMRKiE~KLEKKRA~a~EKmkNKIA~ahKkAEEkRA~AEAkR~ee~lKaeEKA~k 234 (250)
+..|-++-...+..=+..+ .+++......+..|..-|.++..-...-+..++..++..++.+...-..+..++......
T Consensus 36 l~~R~~~I~~~l~~A~~~~-~ea~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~l~~ 114 (141)
T PRK08476 36 MDNRNASIKNDLEKVKTNS-SDVSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKYEAFAKQLAN 114 (141)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 71
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=23.17 E-value=6e+02 Score=23.90 Aligned_cols=8 Identities=13% Similarity=0.210 Sum_probs=3.0
Q ss_pred HhhcCCCC
Q 025589 235 FRAAGFIP 242 (250)
Q Consensus 235 iRaTGklP 242 (250)
||+-++-|
T Consensus 109 iks~~~PP 116 (344)
T PF12777_consen 109 IKSYANPP 116 (344)
T ss_dssp HHHSSS--
T ss_pred HHhhCCCc
Confidence 45555544
No 72
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.45 E-value=1.8e+02 Score=27.88 Aligned_cols=25 Identities=16% Similarity=0.066 Sum_probs=15.2
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHH
Q 025589 172 SKKAAVELQLKKFEEKWEKKKAEYE 196 (250)
Q Consensus 172 ~QKAKAEAeMRKiE~KLEKKRA~a~ 196 (250)
+|.-+|+|.+.-...+.|+.|+.+.
T Consensus 233 lqteqa~adk~iaqakaeerramav 257 (328)
T COG4864 233 LQTEQAEADKNIAQAKAEERRAMAV 257 (328)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHH
Confidence 4555666666666666666665544
No 73
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=22.08 E-value=5.2e+02 Score=22.31 Aligned_cols=16 Identities=6% Similarity=0.055 Sum_probs=6.3
Q ss_pred hhhHHHHHHHHHHHHH
Q 025589 182 KKFEEKWEKKKAEYEE 197 (250)
Q Consensus 182 RKiE~KLEKKRA~a~E 197 (250)
...|.+|..-|.++-+
T Consensus 59 ~e~e~~L~~Ar~EA~~ 74 (154)
T PRK06568 59 EQTNAQIKKLETLRSQ 74 (154)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444433
No 74
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=22.05 E-value=4.8e+02 Score=21.98 Aligned_cols=13 Identities=8% Similarity=0.092 Sum_probs=4.9
Q ss_pred HHHHHHHHhhhhH
Q 025589 154 KADNRAYKRLSAV 166 (250)
Q Consensus 154 K~~nRyqREEAkI 166 (250)
++....+++-..|
T Consensus 20 ~I~~ea~~~~~~i 32 (188)
T PRK02292 20 EIRAEADEEAEEI 32 (188)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 75
>PF12856 Apc9: Anaphase-promoting complex subunit 9; InterPro: IPR024274 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. All APC subunits are members of the cullin family proteins, which bind to a ring-finger subunit via a conserved cullin domain [].The APC can be divided in four parts, the third of which is a tetratricopeptide repeat arm (TPR) that contains multiple subunits, including Apc9 []. This entry represents Apc9, one of the subunits of the anaphase-promoting complex.
Probab=21.84 E-value=71 Score=26.09 Aligned_cols=22 Identities=27% Similarity=0.203 Sum_probs=16.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH
Q 025589 139 KKLALIKAWEENEKAKADNRAY 160 (250)
Q Consensus 139 kreSka~AWEEAEkAK~~nRyq 160 (250)
-++++|.+|+.+|++-.+-=|+
T Consensus 44 l~eSkI~~~l~sEra~h~liFh 65 (100)
T PF12856_consen 44 LRESKIKAWLSSERAAHCLIFH 65 (100)
T ss_pred HHHHHHHHHHHHHHHhcceecc
Confidence 4789999999999875443333
No 76
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=21.80 E-value=8e+02 Score=24.39 Aligned_cols=12 Identities=50% Similarity=0.415 Sum_probs=5.7
Q ss_pred HHHHHhHHHHHH
Q 025589 141 LALIKAWEENEK 152 (250)
Q Consensus 141 eSka~AWEEAEk 152 (250)
.+.+..+++.+.
T Consensus 267 l~~l~~~~~~~l 278 (582)
T PF09731_consen 267 LAELKEEEEEEL 278 (582)
T ss_pred HHHHHHHHHHHH
Confidence 344455554443
No 77
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=21.57 E-value=34 Score=26.86 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhHhHHHHHH
Q 025589 197 ERIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETA 232 (250)
Q Consensus 197 EKmkNKIA~ahKkAEEkRA~AEAkR~ee~lKaeEKA 232 (250)
+.+++.|..+++.|++....++..-..-+..+...|
T Consensus 63 ~~l~~~l~~aq~~a~~~~~~A~~eA~~i~~~A~~~a 98 (131)
T PF05103_consen 63 ESLQRALIQAQETADEIKAEAEEEAEEIIEEAQKEA 98 (131)
T ss_dssp ------------------------------------
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555544444443333333333333
No 78
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=21.52 E-value=5.7e+02 Score=22.57 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=15.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025589 176 AVELQLKKFEEKWEKKKAEYEERIKNKVADINMK 209 (250)
Q Consensus 176 KAEAeMRKiE~KLEKKRA~a~EKmkNKIA~ahKk 209 (250)
.++..+.+.+.++|+.+..+.+.++..+..+--.
T Consensus 141 eae~ii~~A~~~Ie~Ek~~a~~~Lk~ei~~lAv~ 174 (205)
T PRK06231 141 QANLIIFQARQEIEKERRELKEQLQKESVELAML 174 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444455555555555555554444333
No 79
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.25 E-value=7.6e+02 Score=23.94 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=15.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q 025589 138 EKKLALIKAWEENEKAKADNRA 159 (250)
Q Consensus 138 EkreSka~AWEEAEkAK~~nRy 159 (250)
++.++++..|+...+.-|...-
T Consensus 116 ~~te~~l~~y~~~n~~~I~~n~ 137 (309)
T TIGR00570 116 ENTKKKIETYQKENKDVIQKNK 137 (309)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH
Confidence 4567888899988777776443
No 80
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=21.24 E-value=3.3e+02 Score=25.31 Aligned_cols=8 Identities=25% Similarity=0.239 Sum_probs=3.6
Q ss_pred HHHHHhcc
Q 025589 46 VLFFWLSS 53 (250)
Q Consensus 46 ~~~~~~~~ 53 (250)
+|++|+.+
T Consensus 11 ~~~~~l~~ 18 (317)
T TIGR01932 11 LLIVVLFQ 18 (317)
T ss_pred HHHHHHHh
Confidence 44455443
No 81
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=21.14 E-value=1e+03 Score=25.38 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025589 186 EKWEKKKAEYEERIKNKVADI 206 (250)
Q Consensus 186 ~KLEKKRA~a~EKmkNKIA~a 206 (250)
.+||+++.++.++-...+..+
T Consensus 551 ~~l~~~~~~l~~~~~~~~~~~ 571 (782)
T PRK00409 551 EELEEKKEKLQEEEDKLLEEA 571 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 82
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=21.08 E-value=1.2e+03 Score=26.02 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=17.8
Q ss_pred HHHHhhhhHHhHHHhHHHHHHHHHhhhHHHHH
Q 025589 158 RAYKRLSAVGSWEKSKKAAVELQLKKFEEKWE 189 (250)
Q Consensus 158 RyqREEAkI~AWEN~QKAKAEAeMRKiE~KLE 189 (250)
.....+.++..|-...+.+++.++..++..+.
T Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 695 (1201)
T PF12128_consen 664 EREQLKQEIEEAKEERKEQIEEQLNELEEELK 695 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666666666654433
Done!