Query 025589
Match_columns 250
No_of_seqs 137 out of 210
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 13:24:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025589.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025589hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na7_A HP0958; flagellar bioge 85.6 17 0.00057 31.3 13.0 7 243-249 199-205 (256)
2 3mq9_A Bone marrow stromal ant 54.0 1.2E+02 0.0042 27.2 14.9 96 124-221 367-470 (471)
3 2zuo_A MVP, major vault protei 35.3 4.1E+02 0.014 27.8 15.7 40 146-185 715-754 (861)
4 3oja_B Anopheles plasmodium-re 34.0 2.8E+02 0.0095 25.4 14.6 48 196-243 539-586 (597)
5 3mq7_A Bone marrow stromal ant 32.3 2E+02 0.007 23.4 9.8 58 167-224 36-101 (121)
6 3ljm_A Coil Ser L9C; de novo d 30.4 53 0.0018 20.9 3.2 22 168-189 2-25 (31)
7 2eqb_B RAB guanine nucleotide 29.4 2E+02 0.0069 22.4 11.1 50 150-207 26-75 (97)
8 3viq_A SWI5-dependent recombin 29.4 2.1E+02 0.0073 22.7 7.5 62 172-233 7-68 (122)
9 3vkg_A Dynein heavy chain, cyt 22.1 8.3E+02 0.028 29.1 13.0 67 153-221 1916-1982(3245)
10 3oja_A Leucine-rich immune mol 21.9 4.4E+02 0.015 23.7 11.0 60 152-216 412-471 (487)
11 3vkg_A Dynein heavy chain, cyt 20.1 1.1E+03 0.038 28.1 13.5 27 17-43 1767-1793(3245)
No 1
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=85.60 E-value=17 Score=31.28 Aligned_cols=7 Identities=29% Similarity=0.705 Sum_probs=5.5
Q ss_pred CcccccC
Q 025589 243 RKFLSCF 249 (250)
Q Consensus 243 sscfGCF 249 (250)
+.|.|||
T Consensus 199 ~~C~GC~ 205 (256)
T 3na7_A 199 QACGGCF 205 (256)
T ss_dssp TBCTTTC
T ss_pred CccCCCC
Confidence 3599998
No 2
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=54.03 E-value=1.2e+02 Score=27.18 Aligned_cols=96 Identities=13% Similarity=0.131 Sum_probs=54.0
Q ss_pred CcchhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHhHHHhHHHHHHH-----HHhhhHHHHHHHHHHHHHH
Q 025589 124 DSIDKGAALEQLEKEKKLALIKAWEENEKAKADNRAYKRLSAVGSWEKSKKAAVEL-----QLKKFEEKWEKKKAEYEER 198 (250)
Q Consensus 124 gS~drDa~LarVe~EkreSka~AWEEAEkAK~~nRyqREEAkI~AWEN~QKAKAEA-----eMRKiE~KLEKKRA~a~EK 198 (250)
|..+-+.+|..+..+-....-..+.+.|......=.+|.....+. |...+.+.| -.--+..-||++.+....|
T Consensus 367 G~~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (471)
T 3mq9_A 367 GRQTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQK--GFQDVEAQAATANHTVMALMASLDAEKAQGQKK 444 (471)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhh--hHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHH
Confidence 455667777777666555544555555544444444444443332 333322222 2233456777777776444
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHh
Q 025589 199 ---IKNKVADINMKAEEKRAIIEAQR 221 (250)
Q Consensus 199 ---mkNKIA~ahKkAEEkRA~AEAkR 221 (250)
+-++|...+.+-++.||.++.+|
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 445 VEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44677777777778888777655
No 3
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=35.32 E-value=4.1e+02 Score=27.78 Aligned_cols=40 Identities=20% Similarity=0.144 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhHHhHHHhHHHHHHHHHhhhH
Q 025589 146 AWEENEKAKADNRAYKRLSAVGSWEKSKKAAVELQLKKFE 185 (250)
Q Consensus 146 AWEEAEkAK~~nRyqREEAkI~AWEN~QKAKAEAeMRKiE 185 (250)
|=|.+-.+|++.+..-+.+.|.+=-+...|+.+|+-.++|
T Consensus 715 aves~g~a~AeA~a~aea~~Ie~ea~v~~a~l~a~a~~i~ 754 (861)
T 2zuo_A 715 AVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIE 754 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhcchhHHHHHHHHHHHHHhhHHHHHHHHhhhHHHhhh
Confidence 3344444444444444444444444444444444444443
No 4
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=33.96 E-value=2.8e+02 Score=25.41 Aligned_cols=48 Identities=19% Similarity=0.156 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHhhcCCCCC
Q 025589 196 EERIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAGKFRAAGFIPR 243 (250)
Q Consensus 196 ~EKmkNKIA~ahKkAEEkRA~AEAkR~ee~lKaeEKA~kiRaTGklPs 243 (250)
.+++++++..+.++-++++....+-+.+-.....+.-.....+..-|.
T Consensus 539 ~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~ 586 (597)
T 3oja_B 539 TEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPD 586 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred hhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 344556777777777777776665555544444455555566655554
No 5
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=32.28 E-value=2e+02 Score=23.36 Aligned_cols=58 Identities=16% Similarity=0.241 Sum_probs=39.9
Q ss_pred HhHHHhHHHHHHHH-----HhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 025589 167 GSWEKSKKAAVELQ-----LKKFEEKWEKKKAE---YEERIKNKVADINMKAEEKRAIIEAQRGED 224 (250)
Q Consensus 167 ~AWEN~QKAKAEAe-----MRKiE~KLEKKRA~---a~EKmkNKIA~ahKkAEEkRA~AEAkR~ee 224 (250)
++||.+..+.|+|. +..+-.-|+++++. -+++++++|.....+=+++-+.+|..|.+-
T Consensus 36 qAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 36 EAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 57777777776665 34444556666655 367788888888888888877777655544
No 6
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=30.37 E-value=53 Score=20.88 Aligned_cols=22 Identities=45% Similarity=0.720 Sum_probs=13.1
Q ss_pred hHHHhHH--HHHHHHHhhhHHHHH
Q 025589 168 SWEKSKK--AAVELQLKKFEEKWE 189 (250)
Q Consensus 168 AWEN~QK--AKAEAeMRKiE~KLE 189 (250)
.||.+.| |..|.+++-+|.|||
T Consensus 2 ewealekkcaalesklqalekkle 25 (31)
T 3ljm_A 2 EWEALEKKCAALESKLQALEKKLE 25 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666554 445666666666655
No 7
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=29.44 E-value=2e+02 Score=22.40 Aligned_cols=50 Identities=22% Similarity=0.236 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhhhhHHhHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025589 150 NEKAKADNRAYKRLSAVGSWEKSKKAAVELQLKKFEEKWEKKKAEYEERIKNKVADIN 207 (250)
Q Consensus 150 AEkAK~~nRyqREEAkI~AWEN~QKAKAEAeMRKiE~KLEKKRA~a~EKmkNKIA~ah 207 (250)
.+..++..++.+ |..++..||.+..+++..||-.=+...+.-.+=++.++
T Consensus 26 ~e~~~L~~~l~e--------E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar 75 (97)
T 2eqb_B 26 DEVKRLREDIAK--------ENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADAR 75 (97)
T ss_dssp HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555544 56789999999999999999999999998877666663
No 8
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=29.38 E-value=2.1e+02 Score=22.72 Aligned_cols=62 Identities=13% Similarity=0.172 Sum_probs=44.0
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHH
Q 025589 172 SKKAAVELQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQRGEDFLKVEETAG 233 (250)
Q Consensus 172 ~QKAKAEAeMRKiE~KLEKKRA~a~EKmkNKIA~ahKkAEEkRA~AEAkR~ee~lKaeEKA~ 233 (250)
.++...+++++.++.+|+..+....=+-.|+.+.++..-..+|.....--.+=...+.++..
T Consensus 7 ~~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~~LI~KWr~asq~aaeeLf~~~~~rv~ 68 (122)
T 3viq_A 7 SRRLKLEKEVRNLQEQLITAETARKVEAKNEDKDLQTLIQKWKNAAQQAAEVLFKPMAERIR 68 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888999999999988887777777777877777788887665444333344444443
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=22.15 E-value=8.3e+02 Score=29.09 Aligned_cols=67 Identities=9% Similarity=0.064 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhhhHHhHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025589 153 AKADNRAYKRLSAVGSWEKSKKAAVELQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRAIIEAQR 221 (250)
Q Consensus 153 AK~~nRyqREEAkI~AWEN~QKAKAEAeMRKiE~KLEKKRA~a~EKmkNKIA~ahKkAEEkRA~AEAkR 221 (250)
..-.+||+.=..|+..= +.+-+....+|...+.+|+++..++ ++++.+|..-+..|+++++.+++.+
T Consensus 1916 ~~~~~rl~~GL~KL~et-~~~V~~l~~~L~~~~~~L~~k~~ea-~~~l~~i~~~~~~ae~~k~~v~~~~ 1982 (3245)
T 3vkg_A 1916 EEEQLHLNIGLKKLRDT-EAQVKDLQVSLAQKNRELDVKNEQA-NQKLKQMVQDQQAAEIKQKDARELQ 1982 (3245)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344454444444331 3455566666667777777765544 5566777777778888877665433
No 10
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.90 E-value=4.4e+02 Score=23.69 Aligned_cols=60 Identities=10% Similarity=0.024 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhhhHHhHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025589 152 KAKADNRAYKRLSAVGSWEKSKKAAVELQLKKFEEKWEKKKAEYEERIKNKVADINMKAEEKRAI 216 (250)
Q Consensus 152 kAK~~nRyqREEAkI~AWEN~QKAKAEAeMRKiE~KLEKKRA~a~EKmkNKIA~ahKkAEEkRA~ 216 (250)
..+...+|+.+.++.+. .+.++++.++.+-.+.++.|. --++++..+..+...-+++++.
T Consensus 412 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 471 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQS----VQNNAIRDWDMYQHKETQLAE-ENARLKKLNGEADLALASANAT 471 (487)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HhhcchhhhhhhhhHHHHHHH-HhhhhhhhhhhhhhhhHhcccH
Confidence 44555556555555433 233344444444433333333 2233444444444444555544
No 11
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=20.07 E-value=1.1e+03 Score=28.06 Aligned_cols=27 Identities=19% Similarity=0.146 Sum_probs=11.4
Q ss_pred hhhheeccCCCCCCeeEeeehhhhhhh
Q 025589 17 LSLFLSLSRKPQLPFVTVATFGDTLIN 43 (250)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (250)
++.|+.--|+-=-=+++..-.||++-+
T Consensus 1767 ~~~Fi~rvr~NLHvVL~mSPvg~~fR~ 1793 (3245)
T 3vkg_A 1767 YKYFTSQVRRNLHVVFTMNPASPDFHN 1793 (3245)
T ss_dssp HHHHHHHHTTTCCEEEEECTTSTTTTC
T ss_pred HHHHHHHHHHcCEEEEEECCCCHHHHH
Confidence 344554444422222334445555433
Done!