Query 025591
Match_columns 250
No_of_seqs 197 out of 360
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 13:27:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025591.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025591hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1a77a1 a.60.7.1 (A:209-316) F 26.0 9.9 0.00072 27.1 1.0 22 127-148 15-38 (108)
2 d1uela_ d.15.1.1 (A:) Ubiquiti 21.0 51 0.0037 22.2 4.0 23 1-24 1-23 (95)
3 d2f23a2 d.26.1.2 (A:78-156) Gr 17.2 32 0.0023 23.1 2.1 19 25-43 50-68 (79)
4 d1grja2 d.26.1.2 (A:80-158) Gr 16.2 99 0.0072 20.4 4.6 42 3-44 13-68 (79)
5 d1i27a_ a.4.5.30 (A:) C-termin 12.5 15 0.0011 25.6 -0.7 14 152-167 12-25 (73)
6 d1cmwa1 a.60.7.1 (A:174-289) 5 12.2 51 0.0037 22.9 2.2 24 120-149 17-40 (116)
7 d1bt0a_ d.15.1.1 (A:) Rub1 {Mo 10.2 80 0.0059 20.1 2.5 22 1-23 1-22 (73)
8 d1l8na2 d.92.2.2 (A:4-142) alp 10.1 43 0.0031 24.4 1.1 21 34-56 76-96 (139)
9 d1v8ha1 b.1.18.19 (A:2-107) Su 10.1 1.1E+02 0.0082 21.6 3.5 42 70-123 18-59 (106)
10 d1gm5a2 b.40.4.9 (A:106-285) R 10.0 47 0.0034 24.7 1.3 32 127-159 10-41 (180)
No 1
>d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=25.98 E-value=9.9 Score=27.11 Aligned_cols=22 Identities=27% Similarity=0.111 Sum_probs=16.9
Q ss_pred CCCCCC--CcCCCCchhhhHhhhC
Q 025591 127 TDTEKP--RMRGPKRASKIRKLFN 148 (250)
Q Consensus 127 Td~~~p--~~lgPKRaskIrKlFn 148 (250)
||-++| ...|||+|.++-+-|+
T Consensus 15 ~dyn~pGV~GIGpktA~klIk~~g 38 (108)
T d1a77a1 15 TDYNPGGVKGIGFKRAYELVRSGV 38 (108)
T ss_dssp CTTSTTCSTTCCHHHHHHHHHTTC
T ss_pred CcCCCCCCCCcCHHHHHHHHHHcC
Confidence 565544 5789999999988776
No 2
>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.03 E-value=51 Score=22.23 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=18.5
Q ss_pred CeEEeecCCCCeeEEEEecChhhh
Q 025591 1 MKFNIANPTTGCQKKLEIDDDQKL 24 (250)
Q Consensus 1 MKlnIS~P~tG~qk~iEidde~kl 24 (250)
|+|.|-.. +|..+.+||+...-.
T Consensus 1 M~I~vk~~-~g~~~~l~v~~~~TV 23 (95)
T d1uela_ 1 MQVTLKTL-QQQTFKIDIDPEETV 23 (95)
T ss_dssp CEEEEEET-TCCEEEEECCTTSBH
T ss_pred CEEEEEeC-CCCEEEEEECCCccH
Confidence 99999875 599999999876533
No 3
>d2f23a2 d.26.1.2 (A:78-156) GreA transcript cleavage factor, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=17.17 E-value=32 Score=23.11 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=13.2
Q ss_pred cccccccccceecCcccCC
Q 025591 25 RAFFDKRISQEVSGDALGE 43 (250)
Q Consensus 25 ~~f~gKrig~eV~gd~lG~ 43 (250)
.+++|++.|++|.-.+-+-
T Consensus 50 ~ALlGk~~Gd~v~v~~p~g 68 (79)
T d2f23a2 50 KALLGHRVGDVLSLDTPKG 68 (79)
T ss_dssp HHHTTCCTTCEEEEEETTE
T ss_pred HHHhCCCCCCEEEEEcCCC
Confidence 3567888888887766553
No 4
>d1grja2 d.26.1.2 (A:80-158) GreA transcript cleavage factor, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=16.20 E-value=99 Score=20.42 Aligned_cols=42 Identities=19% Similarity=0.223 Sum_probs=23.3
Q ss_pred EEeecCCCCeeEEEEecChhh--------------hcccccccccceecCcccCCc
Q 025591 3 FNIANPTTGCQKKLEIDDDQK--------------LRAFFDKRISQEVSGDALGEE 44 (250)
Q Consensus 3 lnIS~P~tG~qk~iEidde~k--------------l~~f~gKrig~eV~gd~lG~e 44 (250)
+.+-|..+|.+..+.+-.... ..+++|++.||+|+-.+-+-+
T Consensus 13 V~l~d~~~~~~~~~~iVg~~ead~~~~~IS~~SPlG~ALlG~~~Gd~v~v~~p~g~ 68 (79)
T d1grja2 13 VTVLNLDSDEEQTYRIVGDDEADFKQNLISVNSPIARGLIGKEEDDVVVIKTPGGE 68 (79)
T ss_dssp EEEEETTTTEEEEEEEECTTTCBGGGTEEESSSHHHHHHTTCBTTCEECC------
T ss_pred EEEEECCCCCEEEEEEECHHHccccCCeEEeCCHHHHHHhCCCCCCEEEEEcCCCc
Confidence 456666777777666532221 345788888888887655543
No 5
>d1i27a_ a.4.5.30 (A:) C-terminal domain of the rap74 subunit of TFIIF {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.53 E-value=15 Score=25.65 Aligned_cols=14 Identities=50% Similarity=0.907 Sum_probs=12.5
Q ss_pred ccchhhhhhhhccccc
Q 025591 152 EDDVRKYVNTYRRTFT 167 (250)
Q Consensus 152 ~ddv~kyV~~vrr~l~ 167 (250)
||.||.|. .|+|.+
T Consensus 12 EeaVrRYL--~RKPmT 25 (73)
T d1i27a_ 12 EDAVRRYL--TRKPMT 25 (73)
T ss_dssp HHHHHHHH--HHSCBC
T ss_pred HHHHHHHH--hhCCCc
Confidence 57899999 999997
No 6
>d1cmwa1 a.60.7.1 (A:174-289) 5' to 3' exonuclease domain of DNA polymerase Taq {Thermus aquaticus [TaxId: 271]}
Probab=12.24 E-value=51 Score=22.93 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=19.1
Q ss_pred cccCCCCCCCCCCCcCCCCchhhhHhhhCC
Q 025591 120 EHDLPGLTDTEKPRMRGPKRASKIRKLFNL 149 (250)
Q Consensus 120 ek~I~gLTd~~~p~~lgPKRaskIrKlFnL 149 (250)
...|||+. ..|||-|.++-+-|+-
T Consensus 17 sDnipGv~------GiG~KtA~kll~~~gs 40 (116)
T d1cmwa1 17 SDNLPGVK------GIGEKTARKLLEEWGS 40 (116)
T ss_dssp SSCCCCCC------CSTTCTTTTTGGGGGT
T ss_pred ccCccccc------ccCchhHHHHHHhcch
Confidence 45688874 5899999999888863
No 7
>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=10.25 E-value=80 Score=20.06 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=17.8
Q ss_pred CeEEeecCCCCeeEEEEecChhh
Q 025591 1 MKFNIANPTTGCQKKLEIDDDQK 23 (250)
Q Consensus 1 MKlnIS~P~tG~qk~iEidde~k 23 (250)
|++.|-.+ +|....++|+....
T Consensus 1 M~I~Vk~~-~G~~~~l~V~~~~t 22 (73)
T d1bt0a_ 1 MLIKVKTL-TGKEIEIDIEPTDT 22 (73)
T ss_dssp CEEEEECT-TSCEEEEECCTTCB
T ss_pred CEEEEEeC-CCCEEEEEECCCCc
Confidence 89999764 59999999987553
No 8
>d1l8na2 d.92.2.2 (A:4-142) alpha-D-glucuronidase, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=10.13 E-value=43 Score=24.43 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=14.5
Q ss_pred ceecCcccCCcccCcEEEEcccc
Q 025591 34 QEVSGDALGEEFKGYVFKIMGGC 56 (250)
Q Consensus 34 ~eV~gd~lG~e~kGY~~~ItGGn 56 (250)
...++..||+| ||.++++.++
T Consensus 76 ~~~~~~~l~~E--Gy~l~~~~~~ 96 (139)
T d1l8na2 76 RPLEGTLVHPE--GYVIRSDVDD 96 (139)
T ss_dssp CHHHHTCCSTT--CEEEEECCC-
T ss_pred ccccccccCCC--cEEEEEecCC
Confidence 34455667886 9999987654
No 9
>d1v8ha1 b.1.18.19 (A:2-107) Sulfur oxidation protein SoxZ {Thermus thermophilus [TaxId: 274]}
Probab=10.08 E-value=1.1e+02 Score=21.62 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=28.3
Q ss_pred CceEEEeeeCCCCcccCCCCCCCcceeeeeeceeecCCcceEEEEEEeeccccC
Q 025591 70 PGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGEHDL 123 (250)
Q Consensus 70 ~~RvrlLLskG~~gyRp~~rr~GERkRKSVRGciV~~~is~LNlvIVkkGek~I 123 (250)
.-+|++|++ +| ..+|-|+=+ .|..|.++ .|+-+++..+.+.+
T Consensus 18 v~~vk~li~------HP--MeTG~r~d~--~g~~IPa~--~I~~v~v~~ng~~v 59 (106)
T d1v8ha1 18 EFRLQVVAQ------HP--NEPGTRRDA--EGKLIPAK--YINLVEVYFEGEKV 59 (106)
T ss_dssp EEEEEEEEC------CC--CBCSCCBCT--TSCBCCCB--CEEEEEEEETTEEE
T ss_pred eEEEEEEEE------CC--CccccccCC--CCCEecHH--heEEEEEEECCEEE
Confidence 467999998 36 778877654 37778666 45666677665543
No 10
>d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]}
Probab=10.01 E-value=47 Score=24.68 Aligned_cols=32 Identities=28% Similarity=0.523 Sum_probs=25.2
Q ss_pred CCCCCCCcCCCCchhhhHhhhCCCCccchhhhh
Q 025591 127 TDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYV 159 (250)
Q Consensus 127 Td~~~p~~lgPKRaskIrKlFnLsk~ddv~kyV 159 (250)
||.+.=+..|||++..+.++ |+..-.|+--|.
T Consensus 10 ~~i~~lkGvGpk~~~~L~kl-gI~ti~DLL~~~ 41 (180)
T d1gm5a2 10 TDIQYAKGVGPNRKKKLKKL-GIETLRDLLEFF 41 (180)
T ss_dssp CCSSSSSSCCHHHHHHHHTT-TCCSSGGGTSCC
T ss_pred CChhhcCCcCHHHHHHHHHh-CCCcHHHHHHhC
Confidence 66677788999999999986 888777765443
Done!