BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>025593
MTDACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQL
LGQIPNQFCSQQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLST
RTSDRLWVSTVTLSKGLRTREQEDKVSSHLLLKAMASACKVPATFNSELTDSETVDECEQ
QFSEDQELEQIINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVATRND
CDYFKSALFL

High Scoring Gene Products

Symbol, full name Information P value
AT2G01220 protein from Arabidopsis thaliana 4.1e-81

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  025593
        (250 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2038711 - symbol:AT2G01220 species:3702 "Arabi...   814  4.1e-81   1


>TAIR|locus:2038711 [details] [associations]
            symbol:AT2G01220 species:3702 "Arabidopsis thaliana"
            [GO:0009058 "biosynthetic process" evidence=IEA] [GO:0016779
            "nucleotidyltransferase activity" evidence=IEA] [GO:0009941
            "chloroplast envelope" evidence=IDA] InterPro:IPR004821
            Pfam:PF01467 GO:GO:0009058 EMBL:CP002685 GO:GO:0009941
            Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0016779 EMBL:AY120748
            EMBL:AK176608 IPI:IPI00528092 RefSeq:NP_849920.1 UniGene:At.42510
            ProteinModelPortal:Q8L845 PRIDE:Q8L845 EnsemblPlants:AT2G01220.2
            GeneID:814650 KEGG:ath:AT2G01220 TAIR:At2g01220 InParanoid:Q8L845
            OMA:PYFYKKA PhylomeDB:Q8L845 ProtClustDB:CLSN2685024
            Genevestigator:Q8L845 Uniprot:Q8L845
        Length = 388

 Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
 Identities = 160/236 (67%), Positives = 193/236 (81%)

Query:     1 MTDACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQL 60
             M DA IR VVEAIH+SPTQAVVY+ GGAS ALG LMS+PGA+NT+LE+VVPYSR+SM+QL
Sbjct:     1 MGDAAIRTVVEAIHSSPTQAVVYLCGGASLALGWLMSVPGASNTLLESVVPYSRVSMVQL 60

Query:    61 LGQIPNQFCSQQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLST 120
             LG++P+Q CSQ  A  MALLAYNRALKLS+PG PVLGVGFTG+L ++ PK GDHRF LS 
Sbjct:    61 LGRVPSQHCSQALAKEMALLAYNRALKLSKPGYPVLGVGFTGSLVTSRPKRGDHRFFLSM 120

Query:   121 RTSDRLWVSTVTLSKGLRTREQEDKVSSHLLLKAMASACKVPATFNSELTDSETVDECEQ 180
             R SDR+  S+VTL+K LR+RE+EDKVSS  L++AMA AC+V  T +S LT+SE   E E 
Sbjct:   121 RASDRILESSVTLTKNLRSREEEDKVSSCALIQAMAKACQVSGTLDSGLTESEVPYESET 180

Query:   181 QFSEDQELEQIINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVA 236
              F+E+QELEQ+ING +C K+YPF  E    +E+RKIIL GSFNPLH+GHLKLLEVA
Sbjct:   181 HFTEEQELEQLINGHLCCKIYPFSGEAHGSDEDRKIILPGSFNPLHEGHLKLLEVA 236


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.132   0.381    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      250       250   0.00080  114 3  11 22  0.43    33
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  181 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.90u 0.13s 23.03t   Elapsed:  00:00:01
  Total cpu time:  22.90u 0.13s 23.03t   Elapsed:  00:00:01
  Start:  Fri May 10 16:36:12 2013   End:  Fri May 10 16:36:13 2013

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