Query 025593
Match_columns 250
No_of_seqs 272 out of 781
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 07:26:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025593.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025593hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1546 CinA Uncharacterized p 100.0 8E-37 1.7E-41 259.5 16.4 142 3-156 7-161 (162)
2 PRK03661 hypothetical protein; 100.0 1.3E-34 2.9E-39 246.7 16.5 143 3-157 7-163 (164)
3 PRK03657 hypothetical protein; 100.0 2.5E-34 5.3E-39 246.5 16.4 143 3-157 13-168 (170)
4 PF02464 CinA: Competence-dama 100.0 2.1E-33 4.5E-38 236.7 14.2 141 3-155 1-154 (154)
5 TIGR00199 cinA_cterm competenc 100.0 2.3E-32 4.9E-37 229.0 13.3 128 9-148 1-140 (146)
6 PRK00549 competence damage-ind 100.0 9.8E-30 2.1E-34 243.4 16.0 142 3-156 257-412 (414)
7 TIGR00200 cinA_nterm competenc 100.0 5.5E-29 1.2E-33 238.5 15.8 141 3-155 258-410 (413)
8 PRK03673 hypothetical protein; 99.8 2.5E-18 5.3E-23 164.4 11.8 121 3-157 253-380 (396)
9 PRK00962 hypothetical protein; 99.5 1.5E-12 3.2E-17 111.1 13.1 88 23-128 9-124 (165)
10 TIGR00125 cyt_tran_rel cytidyl 98.8 4.7E-09 1E-13 74.8 3.3 32 215-249 1-32 (66)
11 TIGR00124 cit_ly_ligase [citra 98.5 8.7E-08 1.9E-12 90.2 3.6 36 212-249 138-173 (332)
12 PRK08099 bifunctional DNA-bind 98.3 2.4E-07 5.3E-12 89.0 2.6 32 214-249 53-84 (399)
13 cd02156 nt_trans nucleotidyl t 98.2 7.9E-07 1.7E-11 69.5 2.9 26 215-240 1-26 (105)
14 cd02169 Citrate_lyase_ligase C 98.2 1.2E-06 2.5E-11 81.5 3.8 38 211-250 112-149 (297)
15 PTZ00308 ethanolamine-phosphat 97.5 9.9E-05 2.2E-09 70.3 4.8 34 211-248 190-223 (353)
16 PLN02406 ethanolamine-phosphat 96.7 0.0019 4E-08 63.1 4.3 30 210-239 50-79 (418)
17 TIGR00339 sopT ATP sulphurylas 96.6 0.0012 2.6E-08 63.6 2.7 30 219-250 189-218 (383)
18 TIGR02199 rfaE_dom_II rfaE bif 94.9 0.025 5.5E-07 47.0 3.3 29 212-240 10-38 (144)
19 COG4016 Uncharacterized protei 94.8 0.18 4E-06 42.7 8.0 41 58-105 58-111 (165)
20 PF06787 UPF0254: Uncharacteri 92.3 0.7 1.5E-05 39.8 7.5 82 40-138 40-134 (160)
21 KOG3351 Predicted nucleotidylt 90.1 0.21 4.6E-06 46.2 2.4 29 211-239 140-168 (293)
22 PRK11316 bifunctional heptose 89.9 0.28 6.1E-06 47.5 3.3 29 211-239 338-366 (473)
23 PLN02406 ethanolamine-phosphat 88.5 0.45 9.7E-06 46.7 3.5 31 209-239 247-277 (418)
24 PLN02413 choline-phosphate cyt 85.5 1.2 2.5E-05 41.9 4.4 31 209-239 23-53 (294)
25 KOG2803 Choline phosphate cyti 84.3 1.4 3.1E-05 42.0 4.4 31 209-239 194-224 (358)
26 COG2046 MET3 ATP sulfurylase ( 77.6 2.5 5.5E-05 41.1 3.6 30 210-239 180-209 (397)
27 cd00517 ATPS ATP-sulfurylase. 65.6 4.4 9.6E-05 38.9 2.3 21 219-239 162-182 (353)
28 PRK05537 bifunctional sulfate 60.3 6.5 0.00014 39.9 2.5 21 219-239 192-212 (568)
29 PRK04149 sat sulfate adenylylt 57.7 8.7 0.00019 37.5 2.8 21 219-239 192-212 (391)
30 PF14552 Tautomerase_2: Tautom 42.8 25 0.00055 26.7 2.7 46 118-165 21-66 (82)
31 COG2144 Selenophosphate synthe 38.0 1.6E+02 0.0034 28.3 7.6 54 67-120 102-171 (324)
32 COG3053 CitC Citrate lyase syn 33.3 50 0.0011 31.7 3.6 29 211-239 143-171 (352)
33 PF12119 DUF3581: Protein of u 31.0 20 0.00044 32.4 0.6 9 219-227 29-37 (218)
34 KOG4238 Bifunctional ATP sulfu 29.2 29 0.00062 34.4 1.3 17 223-239 425-441 (627)
35 PRK14495 putative molybdopteri 25.6 3.3E+02 0.0072 27.4 8.0 59 93-157 168-226 (452)
36 COG2870 RfaE ADP-heptose synth 25.2 65 0.0014 32.2 3.0 29 211-239 330-358 (467)
37 PF14459 Prok-E2_C: Prokaryoti 24.3 1.1E+02 0.0024 25.2 3.7 49 61-119 30-87 (131)
38 PRK08560 tyrosyl-tRNA syntheta 23.2 1E+02 0.0023 29.0 3.9 40 185-239 18-57 (329)
39 COG1054 Predicted sulfurtransf 21.3 74 0.0016 30.3 2.5 53 3-58 160-216 (308)
40 PF06153 DUF970: Protein of un 21.2 1.1E+02 0.0023 24.9 3.0 26 3-28 10-36 (109)
41 PLN02557 phosphoribosylformylg 20.5 1.9E+02 0.0041 28.2 5.1 68 8-76 272-355 (379)
42 PF03537 Glyco_hydro_114: Glyc 20.0 1.2E+02 0.0026 22.4 2.9 22 7-28 39-60 (74)
No 1
>COG1546 CinA Uncharacterized protein (competence- and mitomycin-induced) [General function prediction only]
Probab=100.00 E-value=8e-37 Score=259.46 Aligned_cols=142 Identities=24% Similarity=0.295 Sum_probs=130.4
Q ss_pred hHHHHHHHHHHHcCCCeEEE--EeccchHHHHhHhcCCCCcccccccceeecCHHHHHHHhCCCCC-----CCCCHHHHH
Q 025593 3 DACIRGVVEAIHASPTQAVV--YIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPN-----QFCSQQTAV 75 (250)
Q Consensus 3 ~~~~~~~v~~ih~s~~~~v~--s~TGG~~~~~~~Lt~vPGsS~~flgg~V~YS~~sK~~lLgv~~~-----gaVS~etA~ 75 (250)
+++++.+++.+.++++++.. |||||++ +++||++||+|++|.+|+|+|||++|+++|||+|+ |+||++||+
T Consensus 7 ~~la~~v~~~L~~~g~tlatAEScTgGll--a~~lt~i~GaS~~f~gg~VtYSneaK~~lLgV~~~tL~~~GaVSe~~a~ 84 (162)
T COG1546 7 ESLAEAVGELLKERGLTLATAESCTGGLL--AAALTDIPGASAVFEGGFVTYSNEAKAKLLGVSPETLEEHGAVSEEVAR 84 (162)
T ss_pred hHHHHHHHHHHHHcCCEEEEEecchhHHH--HHHHHcCCCcHHHhCCceEEEcHHHHHHHhCCCHHHHHHcCCcCHHHHH
Confidence 57889999999999999998 9999985 99999999999999999999999999999999998 999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCeEEEEEceecCCC---CCCC-CCceEEEEEEeCCeeEEEEEEeCCCchhHHHHHHHHH--H
Q 025593 76 NMALLAYNRALKLSRPGAPVLGVGFTGALAST---HPKL-GDHRFHLSTRTSDRLWVSTVTLSKGLRTREQEDKVSS--H 149 (250)
Q Consensus 76 ~MA~~a~~r~~~ls~~~~~digIs~TGiaG~~---~~kp-G~htvyIai~~~~~~~~~~~~l~~~~R~r~~e~~~~s--~ 149 (250)
+||+++++++ ++||||++||+|||+ ++|| | +||||++......+++++|.++ |+.+|+.++.. +
T Consensus 85 eMA~Ga~~~~-------~ad~aiaiTGiAGP~Gg~~~kpvG--tV~ig~~~~~~~~~~~~~~~g~-R~~vR~~a~~~Al~ 154 (162)
T COG1546 85 EMARGAKERA-------GADIAIAITGIAGPDGGSEGKPVG--TVYIGLAIGGEAITIRVNFGGD-REQVRERAVRAALE 154 (162)
T ss_pred HHHHHHHHhc-------CCCEEEEEEEeeCCCCCCCCCCce--EEEEEEEcCCceEEEEEEcCCC-HHHHHHHHHHHHHH
Confidence 9999999999 799999999999975 6689 9 9999999955568899999877 99999998854 8
Q ss_pred HHHHHHH
Q 025593 150 LLLKAMA 156 (250)
Q Consensus 150 lL~~~La 156 (250)
+|++.|.
T Consensus 155 ~l~~~L~ 161 (162)
T COG1546 155 LLLRLLL 161 (162)
T ss_pred HHHHHhh
Confidence 8888775
No 2
>PRK03661 hypothetical protein; Validated
Probab=100.00 E-value=1.3e-34 Score=246.70 Aligned_cols=143 Identities=17% Similarity=0.178 Sum_probs=128.8
Q ss_pred hHHHHHHHHHHHcCCCeEEE--EeccchHHHHhHhcCCCCcccccccceeecCHHHHHHHhCCCCC-----CCCCHHHHH
Q 025593 3 DACIRGVVEAIHASPTQAVV--YIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPN-----QFCSQQTAV 75 (250)
Q Consensus 3 ~~~~~~~v~~ih~s~~~~v~--s~TGG~~~~~~~Lt~vPGsS~~flgg~V~YS~~sK~~lLgv~~~-----gaVS~etA~ 75 (250)
+.+.+.+++.|.++++++.+ |||||++ +++|++|||+|++|.||+|+|||++|.++|||+++ |+||+|||+
T Consensus 7 ~~l~~~v~~~L~~~~~tla~AES~TgGli--a~~lt~vpGaS~~f~Gg~VtYs~~~K~~lLgV~~~~i~~~gavS~e~a~ 84 (164)
T PRK03661 7 MQLSEQVGQALKARGATVTTAESCTGGWV--AKVITDIAGSSAWFERGFVTYSNEAKAQMIGVREETLAQHGAVSEPVVV 84 (164)
T ss_pred HHHHHHHHHHHHHCCCEEEeeHhhhhHHH--HHHHHcCCCchhhcCCceEEEcHHHHHHHcCCCHHHHHhcCCCCHHHHH
Confidence 46788999999999999999 8999975 99999999999999999999999999999999987 999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCeEEEEEceecCCC---CCCC-CCceEEEEEEeCCe-eEEEEEEeCCCchhHHHHHHHHH--
Q 025593 76 NMALLAYNRALKLSRPGAPVLGVGFTGALAST---HPKL-GDHRFHLSTRTSDR-LWVSTVTLSKGLRTREQEDKVSS-- 148 (250)
Q Consensus 76 ~MA~~a~~r~~~ls~~~~~digIs~TGiaG~~---~~kp-G~htvyIai~~~~~-~~~~~~~l~~~~R~r~~e~~~~s-- 148 (250)
+||+++++++ ++||||++||+|||+ ++|| | +||||++++++ ..+++++|+++ |..++++++..
T Consensus 85 ~MA~g~~~~~-------~ad~~ia~TG~AGP~g~~~~kpvG--tv~i~i~~~~~~~~~~~~~~~g~-R~~ir~~~~~~AL 154 (164)
T PRK03661 85 EMAIGALKAA-------RADYAVSISGIAGPDGGSEEKPVG--TVWFGFASASGEGITRRECFSGD-RDAVRRQATAYAL 154 (164)
T ss_pred HHHHHHHHHc-------CCCEEEEecccCCCCCCCCCCCce--EEEEEEEeCCCcEEEEEEecCCC-HHHHHHHHHHHHH
Confidence 9999999999 799999999999984 4588 9 99999999866 67788888875 99999998844
Q ss_pred HHHHHHHHh
Q 025593 149 HLLLKAMAS 157 (250)
Q Consensus 149 ~lL~~~La~ 157 (250)
++|++.|.+
T Consensus 155 ~~L~~~l~~ 163 (164)
T PRK03661 155 QTLWQQFLQ 163 (164)
T ss_pred HHHHHHHhh
Confidence 777777654
No 3
>PRK03657 hypothetical protein; Validated
Probab=100.00 E-value=2.5e-34 Score=246.49 Aligned_cols=143 Identities=12% Similarity=0.144 Sum_probs=131.2
Q ss_pred hHHHHHHHHHHHcCCCeEEE--EeccchHHHHhHhcCCCCcccccccceeecCHHHHHHHhCCCCC-----CCCCHHHHH
Q 025593 3 DACIRGVVEAIHASPTQAVV--YIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPN-----QFCSQQTAV 75 (250)
Q Consensus 3 ~~~~~~~v~~ih~s~~~~v~--s~TGG~~~~~~~Lt~vPGsS~~flgg~V~YS~~sK~~lLgv~~~-----gaVS~etA~ 75 (250)
+++.+.+++.+.++.+++.+ |||||++ +++|++|||+|++|.||+|+|||++|.++|||+++ |+||+|||+
T Consensus 13 ~~l~~~v~~~L~~~~~tla~AES~TGGli--as~lt~vpGaS~~f~Gg~VtYs~~~K~~lLgV~~~~i~~~gavS~e~A~ 90 (170)
T PRK03657 13 ENLTKALSQRLIADQLRLTTAESCTGGKL--ASALCAAEDTPKFYGAGFVTFTDEAKMKILSVSQQSLERYSAVSEAVVA 90 (170)
T ss_pred HHHHHHHHHHHHHCCCEEEeeHhhhhHHH--HHHHhcCCCchhhcCCeEEEEcHHHHhHhcCCCHHHHHhcCCCCHHHHH
Confidence 56788999999999999999 8999975 99999999999999999999999999999999987 999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCeEEEEEceecCCC---CCCC-CCceEEEEEEeCCeeEEEEEEeCCCchhHHHHHHHHH--H
Q 025593 76 NMALLAYNRALKLSRPGAPVLGVGFTGALAST---HPKL-GDHRFHLSTRTSDRLWVSTVTLSKGLRTREQEDKVSS--H 149 (250)
Q Consensus 76 ~MA~~a~~r~~~ls~~~~~digIs~TGiaG~~---~~kp-G~htvyIai~~~~~~~~~~~~l~~~~R~r~~e~~~~s--~ 149 (250)
+||+++++++ ++||||++||+|||+ ++|| | +||||+++++..++++++|+|+ |+.+++.++.. +
T Consensus 91 ~MA~g~~~~~-------~aDiala~TG~AGP~g~~~~kpvG--tV~iai~~~~~~~~~~~~~~g~-R~~ir~~a~~~al~ 160 (170)
T PRK03657 91 EMATGAIERA-------DADISIAISGYGGPEGGEDGTPAG--TVWFAWNIKGQTYTARMHFAGD-CETVLAKAVRFALA 160 (170)
T ss_pred HHHHHHHHHc-------CCCEEEEeccccCCCCCCCCCCCe--EEEEEEEcCCcEEEEEEecCCC-HHHHHHHHHHHHHH
Confidence 9999999999 799999999999985 3588 9 9999999988888888899877 99999999854 8
Q ss_pred HHHHHHHh
Q 025593 150 LLLKAMAS 157 (250)
Q Consensus 150 lL~~~La~ 157 (250)
+|++.|.+
T Consensus 161 ~L~~~l~~ 168 (170)
T PRK03657 161 QLLQLLLK 168 (170)
T ss_pred HHHHHHHh
Confidence 88888876
No 4
>PF02464 CinA: Competence-damaged protein; InterPro: IPR008136 CinA is the first gene in the competence-inducible (cin) operon, and is thought to be specifically required at some stage in the process of transformation []. This is a C-terminal region of putative competence-damaged proteins from the cin operon.; PDB: 2A9S_A.
Probab=100.00 E-value=2.1e-33 Score=236.69 Aligned_cols=141 Identities=25% Similarity=0.350 Sum_probs=114.7
Q ss_pred hHHHHHHHHHHHcCCCeEEE--EeccchHHHHhHhcCCCCcccccccceeecCHHHHHHHhCCCCC-----CCCCHHHHH
Q 025593 3 DACIRGVVEAIHASPTQAVV--YIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPN-----QFCSQQTAV 75 (250)
Q Consensus 3 ~~~~~~~v~~ih~s~~~~v~--s~TGG~~~~~~~Lt~vPGsS~~flgg~V~YS~~sK~~lLgv~~~-----gaVS~etA~ 75 (250)
|++...+++.|.++++++.+ |||||+. +++|+++||+|++|.||+|+|+|++|.++|||+++ |+||+|||+
T Consensus 1 ~~l~~~v~~~L~~~~~tia~aES~TGG~l--a~~l~~vpGaS~~f~gg~V~Ys~~~K~~~LgV~~~~i~~~g~vS~e~A~ 78 (154)
T PF02464_consen 1 ESLAKAVVKLLKERGLTIATAESCTGGLL--ASWLTSVPGASSVFKGGVVTYSNEAKQKLLGVSPETIEKYGAVSEEVAR 78 (154)
T ss_dssp HHHHHHHHHHHHHHT--EEEEECTTTTHH--HHHHTTSTTGGGTEEEEEEE-SHHHHHHHH---HHHHHHH-SSSHHHHH
T ss_pred ChHHHHHHHHHHHCCCEEEeehhhhhHHH--HHHHhcCCCccceeCCEEEEccHHHHhhhcCcCHHHHHHcCCCcHHHHH
Confidence 57889999999999999998 8999975 99999999999999999999999999999999987 999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCeEEEEEceecCCC---CCCC-CCceEEEEEEeCCeeEEEEEEeCCCchhHHHHHHHHH--H
Q 025593 76 NMALLAYNRALKLSRPGAPVLGVGFTGALAST---HPKL-GDHRFHLSTRTSDRLWVSTVTLSKGLRTREQEDKVSS--H 149 (250)
Q Consensus 76 ~MA~~a~~r~~~ls~~~~~digIs~TGiaG~~---~~kp-G~htvyIai~~~~~~~~~~~~l~~~~R~r~~e~~~~s--~ 149 (250)
+||.++++++ ++||||++||+|||+ .++| | +||||+..+++++++++.|.++ |+.++++++.. +
T Consensus 79 ~MA~~~~~~~-------~adi~lA~TG~aGP~~~~~~~~~G--~v~iai~~~~~~~~~~~~~~g~-R~~ir~~~~~~al~ 148 (154)
T PF02464_consen 79 AMARGARKRF-------GADIGLAITGVAGPGGGTEGKPVG--TVYIAIAYRGGVWVREVQFPGD-REEIRQRAVNQALD 148 (154)
T ss_dssp HHHHHHHHTS-------S-SEEEEEEE--SSSS--SSS-TT--EEEEEEEETTSEEEEEEE--S--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-------CCCEEEEEEeccCCCCcccCCcCc--eEEEEEEeCCceEEEEEECCCC-HHHHHHHHHHHHHH
Confidence 9999999999 799999999999986 4577 9 9999999999999999999886 99999998843 6
Q ss_pred HHHHHH
Q 025593 150 LLLKAM 155 (250)
Q Consensus 150 lL~~~L 155 (250)
+|++.|
T Consensus 149 ~L~~~L 154 (154)
T PF02464_consen 149 LLRRYL 154 (154)
T ss_dssp HHH---
T ss_pred HHHhhC
Confidence 666654
No 5
>TIGR00199 cinA_cterm competence/damage-inducible protein CinA C-terminal domain. CinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species. Several bacterial species have a protein consisting largely of the C-terminal domain of CinA but lacking the N-terminal domain.
Probab=100.00 E-value=2.3e-32 Score=229.02 Aligned_cols=128 Identities=21% Similarity=0.230 Sum_probs=115.5
Q ss_pred HHHHHHcCCCeEEE--EeccchHHHHhHhcCCCCcccccccceeecCHHHHHHHhCCCCC-----CCCCHHHHHHHHHHH
Q 025593 9 VVEAIHASPTQAVV--YIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPN-----QFCSQQTAVNMALLA 81 (250)
Q Consensus 9 ~v~~ih~s~~~~v~--s~TGG~~~~~~~Lt~vPGsS~~flgg~V~YS~~sK~~lLgv~~~-----gaVS~etA~~MA~~a 81 (250)
+++.|.++++++.+ |||||++ +++|+++||+|++|.||+|+|||++|+++|||+++ |+||+|||++||+++
T Consensus 1 v~~~L~~~~~tla~aES~TgGli--a~~l~~vpGas~~f~gg~VtYs~~~K~~lLgV~~~~i~~~gavS~e~a~~MA~g~ 78 (146)
T TIGR00199 1 LSERLKALGLTVATAESCTGGLL--AHALTDISGASKYFGGGVVCYTNQVKINLLGVSQETLARFGAVSEECAAEMALGV 78 (146)
T ss_pred CHHHHHhCCCcEEEehhhhhHHH--HHHHHcCCChHHHhCCceEEEcHHHHHHHhCCCHHHHHhcCCCCHHHHHHHHHHH
Confidence 36788899999998 8999975 99999999999999999999999999999999887 999999999999999
Q ss_pred HHHHhhcCCCCCCeEEEEEceecCCC---CCCC-CCceEEEEEEeCCe-eEEEEEEeCCCchhHHHHHHHHH
Q 025593 82 YNRALKLSRPGAPVLGVGFTGALAST---HPKL-GDHRFHLSTRTSDR-LWVSTVTLSKGLRTREQEDKVSS 148 (250)
Q Consensus 82 ~~r~~~ls~~~~~digIs~TGiaG~~---~~kp-G~htvyIai~~~~~-~~~~~~~l~~~~R~r~~e~~~~s 148 (250)
++++ ++||||++||+|||+ ++|| | +||||++++++ .++++++|.++ |..+++.++..
T Consensus 79 ~~~~-------~adi~ia~TG~AGP~~~~~~~pvG--tv~ial~~~~~~~~~~~~~~~g~-R~~ir~~~~~~ 140 (146)
T TIGR00199 79 KERF-------GADVGIAISGIAGPDGGEEEKPGG--TVWFIWIIAKGQAYTAEMHFAGD-RETIRALAVRY 140 (146)
T ss_pred HHHc-------CCCEEEEeeccCCCCCCCCCCCCe--EEEEEEEeCCCcEEEEEEecCCC-HHHHHHHHHHH
Confidence 9999 799999999999975 4588 9 99999998765 77888888765 99999988843
No 6
>PRK00549 competence damage-inducible protein A; Provisional
Probab=99.97 E-value=9.8e-30 Score=243.39 Aligned_cols=142 Identities=25% Similarity=0.288 Sum_probs=128.6
Q ss_pred hHHHHHHHHHHHcCCCeEEE--EeccchHHHHhHhcCCCCcccccccceeecCHHHHHHHhCCCCC-----CCCCHHHHH
Q 025593 3 DACIRGVVEAIHASPTQAVV--YIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPN-----QFCSQQTAV 75 (250)
Q Consensus 3 ~~~~~~~v~~ih~s~~~~v~--s~TGG~~~~~~~Lt~vPGsS~~flgg~V~YS~~sK~~lLgv~~~-----gaVS~etA~ 75 (250)
+++.+.+++.+.+++.++.+ |||||+ ++++|+++||+|++|.||+|+|||++|.++|||+++ |+||+|||+
T Consensus 257 ~~l~~~v~~~L~~~~~tla~aEScTgG~--ia~~lt~vpGaS~~f~gg~V~Ys~~~K~~~LgV~~~~l~~~gavS~e~a~ 334 (414)
T PRK00549 257 DSLEEVVAKLLKEKGLTIATAESCTGGL--LAARLTDFPGSSSYFKGGVVTYSNEAKAKLLGVPPETLEEHGAVSEETAE 334 (414)
T ss_pred ccHHHHHHHHHHhCCCeEEEecchhHHH--HHHHHHhCCChHhhcCCeEEEecHHHHHHhcCCCHHHHhhcCCCCHHHHH
Confidence 46788999999999999998 899997 499999999999999999999999999999999987 999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCeEEEEEceecCCC---CCCC-CCceEEEEEEeCCe-eEEEEEEeCCCchhHHHHHHHHH--
Q 025593 76 NMALLAYNRALKLSRPGAPVLGVGFTGALAST---HPKL-GDHRFHLSTRTSDR-LWVSTVTLSKGLRTREQEDKVSS-- 148 (250)
Q Consensus 76 ~MA~~a~~r~~~ls~~~~~digIs~TGiaG~~---~~kp-G~htvyIai~~~~~-~~~~~~~l~~~~R~r~~e~~~~s-- 148 (250)
+||+++++++ ++||||++||+|||+ ++|| | +||||++.+++ +++++++|.++ |+.+++.++..
T Consensus 335 ~MA~g~~~~~-------~ad~~ia~tG~aGP~g~~~~~pvG--~v~i~i~~~~~~~~~~~~~~~g~-r~~ir~~~~~~aL 404 (414)
T PRK00549 335 EMAEGARKLL-------GADIGISITGVAGPDGGTEEKPVG--TVYIGLATPGGETVVKELILGGS-RSDIRERAVTYAL 404 (414)
T ss_pred HHHHHHHHHc-------CCCEEEEeccccCCCCCCCCCCCe--eEEEEEEeCCCcEEEEEEecCCC-HHHHHHHHHHHHH
Confidence 9999999998 799999999999974 4688 9 99999999887 88999999876 99998888844
Q ss_pred HHHHHHHH
Q 025593 149 HLLLKAMA 156 (250)
Q Consensus 149 ~lL~~~La 156 (250)
++|++.|.
T Consensus 405 ~~l~~~l~ 412 (414)
T PRK00549 405 DLLRRALL 412 (414)
T ss_pred HHHHHHHh
Confidence 77777764
No 7
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=99.96 E-value=5.5e-29 Score=238.46 Aligned_cols=141 Identities=13% Similarity=0.140 Sum_probs=126.5
Q ss_pred hHHHHHHHHHHHcCCCeEEE--EeccchHHHHhHhcCCCCcccccccceeecCHHHHHHHhCCCCC-----CCCCHHHHH
Q 025593 3 DACIRGVVEAIHASPTQAVV--YIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPN-----QFCSQQTAV 75 (250)
Q Consensus 3 ~~~~~~~v~~ih~s~~~~v~--s~TGG~~~~~~~Lt~vPGsS~~flgg~V~YS~~sK~~lLgv~~~-----gaVS~etA~ 75 (250)
+++.+.+++.+.++++++.+ |||||+. +++|+++||||++|.||+|+|||++|.++|||+++ |+||+|||+
T Consensus 258 ~~l~~~v~~~L~~~~~tla~aES~TgGll--a~~l~~vpgas~~f~Gg~V~Ys~~~K~~~Lgv~~~~l~~~gavS~e~a~ 335 (413)
T TIGR00200 258 EGLPAQISRELQERGFTLTLAESFTGGLL--ALQLTDHSGASKLFAGGVPLYANEVKPSQLGVLAETAHWIGAVSANHAA 335 (413)
T ss_pred hhHHHHHHHHHHhCCCcEEEehhhhhhHH--HHHHHcCCCcHHhhCCcEEEecHHHHHHhcCCCHHHHHHhCcCCHHHHH
Confidence 46788899999999999998 8999975 99999999999999999999999999999999987 999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCeEEEEEceecCCC--CCCC-CCceEEEEEEeCCeeEEEEEEeCCCchhHHHHHHHHH--HH
Q 025593 76 NMALLAYNRALKLSRPGAPVLGVGFTGALAST--HPKL-GDHRFHLSTRTSDRLWVSTVTLSKGLRTREQEDKVSS--HL 150 (250)
Q Consensus 76 ~MA~~a~~r~~~ls~~~~~digIs~TGiaG~~--~~kp-G~htvyIai~~~~~~~~~~~~l~~~~R~r~~e~~~~s--~l 150 (250)
+||+++++++ ++||||++||+|||. .+|| | +||||++++++..++++.|.++ |..+++.++.. ++
T Consensus 336 ~MA~g~~~~~-------~ad~~ia~TG~AGP~~~~~~pvG--~V~i~~~~~~~~~~~~~~~~g~-R~~~r~~~~~~al~~ 405 (413)
T TIGR00200 336 GLALGVSGFE-------GEDLGIALTGPAGPDFAERVRFG--TVRYGLAIRQEVAMHALNMLGR-RLGIRDIAAEHGWIE 405 (413)
T ss_pred HHHHHHHHHc-------CCCEEEEEecCCCCCCCCCCccc--eEEEEEEcCCceEEEEEecCCC-HHHHHHHHHHHHHHH
Confidence 9999999999 799999999999973 4688 9 9999999887778888888866 99998888743 55
Q ss_pred HHHHH
Q 025593 151 LLKAM 155 (250)
Q Consensus 151 L~~~L 155 (250)
|++.|
T Consensus 406 l~~~l 410 (413)
T TIGR00200 406 VVESL 410 (413)
T ss_pred HHHHH
Confidence 66655
No 8
>PRK03673 hypothetical protein; Provisional
Probab=99.77 E-value=2.5e-18 Score=164.45 Aligned_cols=121 Identities=13% Similarity=0.110 Sum_probs=105.3
Q ss_pred hHHHHHHHHHHHcCCCeEEE--EeccchHHHHhHhcCCCCcccccccceeecCHHHHHHHhCCCCCCCCCHHHHHHHHHH
Q 025593 3 DACIRGVVEAIHASPTQAVV--YIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPNQFCSQQTAVNMALL 80 (250)
Q Consensus 3 ~~~~~~~v~~ih~s~~~~v~--s~TGG~~~~~~~Lt~vPGsS~~flgg~V~YS~~sK~~lLgv~~~gaVS~etA~~MA~~ 80 (250)
+++.+.+++.+.+++.++.+ |||||+. +++||++ |.+|+||+ +|||+++.- ++| ++||++
T Consensus 253 ~~l~~~v~~lL~~~~~tla~AEScTGGll--a~~lt~v---S~~f~gg~----------~LgV~~~~l--~~v-~~MA~g 314 (396)
T PRK03673 253 EGLPAQIARRLQERQLSLTLSEQFTAGLL--ALQLSRA---GAPLLAGE----------VLPSQEETL--AQT-AHWATE 314 (396)
T ss_pred CCHHHHHHHHHHhcCCcEEEEHhhhhHHH--HHHHHhh---hhhhcceE----------EcCCCHHHH--HHH-HHHHHH
Confidence 46778889999999999998 8999975 9999999 99999998 899887621 116 999999
Q ss_pred HHHHHhhcCCCCCCeEEEEEceecCCCCCCCCCceEEEEEEeCCeeEEEEEEeCCCchhHHH---HHHHHH--HHHHHHH
Q 025593 81 AYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLSTRTSDRLWVSTVTLSKGLRTREQ---EDKVSS--HLLLKAM 155 (250)
Q Consensus 81 a~~r~~~ls~~~~~digIs~TGiaG~~~~kpG~htvyIai~~~~~~~~~~~~l~~~~R~r~~---e~~~~s--~lL~~~L 155 (250)
+++++ ++|+|||+||+|| | +||||+++++++++++++|+++ |..++ +.+... +||++.|
T Consensus 315 ~r~~~-------~ad~~ls~TGiAG------G--tV~ial~~~~~~~~~~~~~~g~-R~~ir~~~~~aa~~AL~~lrr~L 378 (396)
T PRK03673 315 RRANH-------FAGLALAVSGLEN------E--HLNFALHTPDGTFAQRVRFSAT-RYSLAIRQEVCAMMALNMLRRWL 378 (396)
T ss_pred HHHHh-------CCCEEEEeccccC------C--EEEEEEEcCCCEEEEEEEcCCC-hHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999 8999999999999 7 9999999999999999999876 88888 777643 8888888
Q ss_pred Hh
Q 025593 156 AS 157 (250)
Q Consensus 156 a~ 157 (250)
..
T Consensus 379 ~~ 380 (396)
T PRK03673 379 NG 380 (396)
T ss_pred cC
Confidence 74
No 9
>PRK00962 hypothetical protein; Provisional
Probab=99.45 E-value=1.5e-12 Score=111.06 Aligned_cols=88 Identities=17% Similarity=0.140 Sum_probs=76.2
Q ss_pred EeccchHHHHhHhcCCC-------Cccccc--------ccceeecCHHHHHHHhCCCCC---------CCCC----HHHH
Q 025593 23 YIAGGASQALGMLMSIP-------GATNTV--------LEAVVPYSRMSMIQLLGQIPN---------QFCS----QQTA 74 (250)
Q Consensus 23 s~TGG~~~~~~~Lt~vP-------GsS~~f--------lgg~V~YS~~sK~~lLgv~~~---------gaVS----~etA 74 (250)
+||||.. +..|+++| |+|.+| .+|.|.||+++|..+|+++|+ +++| +++|
T Consensus 9 cfTgG~I--aa~Ihavp~gY~~~~gaS~~~~~~~~v~v~gg~fiyS~e~~~~lL~v~~~~p~~~~~~~kaysee~De~vA 86 (165)
T PRK00962 9 CFTHGKI--GREIHKIACGYPELEKKSNYSEINGNVSVVASMFIPSLSGIESLLDIEPPEPDYVYKYIKAYNEENDLLVA 86 (165)
T ss_pred hhcccHH--HHHHHhcccccccccCcchhhhccccceeeeeEEEecHHHHHHhcCCCCccccchhccccccCcccCHHHH
Confidence 8999975 99999999 999999 999999999999999999654 7899 9999
Q ss_pred HHHHHHHHHHHhhcCCCCCCeEEEEEceecCCCCCCCCCceEEEEEEeCCeeEE
Q 025593 75 VNMALLAYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLSTRTSDRLWV 128 (250)
Q Consensus 75 ~~MA~~a~~r~~~ls~~~~~digIs~TGiaG~~~~kpG~htvyIai~~~~~~~~ 128 (250)
..||+++++++ ++|||||.|.-.|- | =|++-+.+....
T Consensus 87 ~~MA~~vr~~l-------~aDiaI~tTAGiGr-----G----~i~i~~~~~~~~ 124 (165)
T PRK00962 87 KLMAEALKNKT-------NCDIAIGTTAGIGR-----G----AICIVTDKNEYL 124 (165)
T ss_pred HHHHHHHHHHh-------CCCEEEEeccccCC-----c----eEEEEeCCceEE
Confidence 99999999999 79999999976653 3 256666665443
No 10
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=98.78 E-value=4.7e-09 Score=74.85 Aligned_cols=32 Identities=38% Similarity=0.562 Sum_probs=27.4
Q ss_pred EEEecCCCCcCchhHHHHHHHHHhcccCCccceee
Q 025593 215 KIILSGSFNPLHDGHLKLLEVATRNDCDYFKSALF 249 (250)
Q Consensus 215 ~~i~~GsFnP~h~gHl~~~~~a~~~~~~~l~~~~~ 249 (250)
+++++|+|||+|.||+.++++|.+. .+ +.+++
T Consensus 1 i~~~~G~Fdp~H~GH~~~l~~a~~~--~~-~~vv~ 32 (66)
T TIGR00125 1 RVIFVGTFDPFHLGHLDLLERAKEL--FD-ELIVG 32 (66)
T ss_pred CEEEcCccCCCCHHHHHHHHHHHHh--CC-EEEEE
Confidence 5899999999999999999999999 44 45543
No 11
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.48 E-value=8.7e-08 Score=90.20 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=32.6
Q ss_pred CCeEEEecCCCCcCchhHHHHHHHHHhcccCCccceee
Q 025593 212 EERKIILSGSFNPLHDGHLKLLEVATRNDCDYFKSALF 249 (250)
Q Consensus 212 ~~~~~i~~GsFnP~h~gHl~~~~~a~~~~~~~l~~~~~ 249 (250)
+.++|+++|||||+|+||++|+++|+++ ++.+.|++
T Consensus 138 ~~~i~~~~g~fdP~t~GH~~li~~A~~~--~d~~~v~v 173 (332)
T TIGR00124 138 GNKIGSIVMNANPFTNGHRYLIEQAARQ--CDWLHLFV 173 (332)
T ss_pred CCcEEEEEeCcCCCchHHHHHHHHHHHH--CCEEEEEE
Confidence 4689999999999999999999999999 77777765
No 12
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=98.33 E-value=2.4e-07 Score=89.03 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=29.3
Q ss_pred eEEEecCCCCcCchhHHHHHHHHHhcccCCccceee
Q 025593 214 RKIILSGSFNPLHDGHLKLLEVATRNDCDYFKSALF 249 (250)
Q Consensus 214 ~~~i~~GsFnP~h~gHl~~~~~a~~~~~~~l~~~~~ 249 (250)
++||++|+|||+|.||+.|+++|.++ .|++++
T Consensus 53 ~~~v~~G~FdP~H~GH~~lI~~A~~~----~d~l~v 84 (399)
T PRK08099 53 KIGVVFGKFYPLHTGHIYLIQRACSQ----VDELHI 84 (399)
T ss_pred cEEEEEEecCCCCHHHHHHHHHHHHH----CCeeEE
Confidence 58999999999999999999999999 677765
No 13
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=98.22 E-value=7.9e-07 Score=69.52 Aligned_cols=26 Identities=35% Similarity=0.305 Sum_probs=23.7
Q ss_pred EEEecCCCCcCchhHHHHHHHHHhcc
Q 025593 215 KIILSGSFNPLHDGHLKLLEVATRND 240 (250)
Q Consensus 215 ~~i~~GsFnP~h~gHl~~~~~a~~~~ 240 (250)
.+++||+|||+|.||+.++++|.+++
T Consensus 1 ~~~~~G~Fdp~H~GH~~l~~~a~~~~ 26 (105)
T cd02156 1 KARFPGEPGYLHIGHAKLICRAKGIA 26 (105)
T ss_pred CEEeCCCCCCCCHHHHHHHHHHHHhC
Confidence 37999999999999999999998874
No 14
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.19 E-value=1.2e-06 Score=81.46 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=34.7
Q ss_pred CCCeEEEecCCCCcCchhHHHHHHHHHhcccCCccceeeC
Q 025593 211 NEERKIILSGSFNPLHDGHLKLLEVATRNDCDYFKSALFL 250 (250)
Q Consensus 211 ~~~~~~i~~GsFnP~h~gHl~~~~~a~~~~~~~l~~~~~~ 250 (250)
+..+++-+.|||||+|+||+.++++|.+. ++++.|||+
T Consensus 112 ~~~~~~~~~~~FDPiH~GHl~ii~~a~~~--~d~~~V~i~ 149 (297)
T cd02169 112 PGKKIAAIVMNANPFTLGHRYLVEKAAAE--NDWVHLFVV 149 (297)
T ss_pred CCCceEEEEecCCCCchHHHHHHHHHHhh--CCeEEEEEE
Confidence 45688999999999999999999999999 999999874
No 15
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=97.53 E-value=9.9e-05 Score=70.29 Aligned_cols=34 Identities=26% Similarity=0.459 Sum_probs=29.4
Q ss_pred CCCeEEEecCCCCcCchhHHHHHHHHHhcccCCcccee
Q 025593 211 NEERKIILSGSFNPLHDGHLKLLEVATRNDCDYFKSAL 248 (250)
Q Consensus 211 ~~~~~~i~~GsFnP~h~gHl~~~~~a~~~~~~~l~~~~ 248 (250)
.+.++++++|+|||+|.||+.+.++|.++ .|+++
T Consensus 190 ~~~kiv~~~G~FDl~H~GHi~~L~~A~~l----gd~LI 223 (353)
T PTZ00308 190 PGDRIVYVDGSFDLFHIGHIRVLQKAREL----GDYLI 223 (353)
T ss_pred CCCeEEEECCccCCCCHHHHHHHHHHHHh----CCEEE
Confidence 35689999999999999999999999998 45554
No 16
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=96.66 E-value=0.0019 Score=63.05 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=27.1
Q ss_pred CCCCeEEEecCCCCcCchhHHHHHHHHHhc
Q 025593 210 FNEERKIILSGSFNPLHDGHLKLLEVATRN 239 (250)
Q Consensus 210 ~~~~~~~i~~GsFnP~h~gHl~~~~~a~~~ 239 (250)
++...++.++|+|||+|.||+.+.++|.++
T Consensus 50 ~~~~~rV~~~G~FDllH~GH~~~L~qAk~l 79 (418)
T PLN02406 50 KKKPVRVYMDGCFDMMHYGHANALRQARAL 79 (418)
T ss_pred CCCceEEEEcCeeCCCCHHHHHHHHHHHHh
Confidence 455567999999999999999999999998
No 17
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=96.64 E-value=0.0012 Score=63.62 Aligned_cols=30 Identities=27% Similarity=0.245 Sum_probs=27.3
Q ss_pred cCCCCcCchhHHHHHHHHHhcccCCccceeeC
Q 025593 219 SGSFNPLHDGHLKLLEVATRNDCDYFKSALFL 250 (250)
Q Consensus 219 ~GsFnP~h~gHl~~~~~a~~~~~~~l~~~~~~ 250 (250)
-=||||+|.||+.|++.|++. +++|++||.
T Consensus 189 fqt~nPiHr~H~~l~~~a~e~--l~~d~lll~ 218 (383)
T TIGR00339 189 FQTRNPMHRAHEELTKRAARS--LPNAGVLVH 218 (383)
T ss_pred eccCCCCchHHHHHHHHHHHH--cCCCeEEEE
Confidence 478999999999999999999 889999873
No 18
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=94.91 E-value=0.025 Score=46.95 Aligned_cols=29 Identities=28% Similarity=0.519 Sum_probs=25.7
Q ss_pred CCeEEEecCCCCcCchhHHHHHHHHHhcc
Q 025593 212 EERKIILSGSFNPLHDGHLKLLEVATRND 240 (250)
Q Consensus 212 ~~~~~i~~GsFnP~h~gHl~~~~~a~~~~ 240 (250)
.+++++.-|.||-+|.||..+.++|.+.+
T Consensus 10 ~~~~v~~~G~FDgvH~GH~~ll~~a~~~~ 38 (144)
T TIGR02199 10 GKKIVFTNGCFDILHAGHVSYLQQARALG 38 (144)
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHhC
Confidence 45788999999999999999999998764
No 19
>COG4016 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.78 E-value=0.18 Score=42.72 Aligned_cols=41 Identities=24% Similarity=0.299 Sum_probs=32.3
Q ss_pred HHHhCCC-CC--------CCCCH----HHHHHHHHHHHHHHhhcCCCCCCeEEEEEceecC
Q 025593 58 IQLLGQI-PN--------QFCSQ----QTAVNMALLAYNRALKLSRPGAPVLGVGFTGALA 105 (250)
Q Consensus 58 ~~lLgv~-~~--------gaVS~----etA~~MA~~a~~r~~~ls~~~~~digIs~TGiaG 105 (250)
.++|+.. |+ ++-|+ ++|.-||++++++. .+|+|||.|.-.|
T Consensus 58 rslL~i~pPEPd~~~~~aKaY~EE~D~~VA~mMAr~vre~t-------~adigIGtTAGiG 111 (165)
T COG4016 58 RSLLDIKPPEPDFNYKYAKAYSEEKDLEVAKMMARGVREKT-------NADIGIGTTAGIG 111 (165)
T ss_pred HHHhCCCCCCCCcchhhhhhhhhhhhHHHHHHHHHHHHHHh-------CCCcccccccccC
Confidence 4688874 44 44554 58999999999999 7999999997665
No 20
>PF06787 UPF0254: Uncharacterised protein family (UPF0254); InterPro: IPR009625 This is a group of proteins of unknown function.
Probab=92.32 E-value=0.7 Score=39.75 Aligned_cols=82 Identities=23% Similarity=0.270 Sum_probs=52.7
Q ss_pred CcccccccceeecCHHHHHHHhCCCC-C--------CCC----CHHHHHHHHHHHHHHHhhcCCCCCCeEEEEEceecCC
Q 025593 40 GATNTVLEAVVPYSRMSMIQLLGQIP-N--------QFC----SQQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALAS 106 (250)
Q Consensus 40 GsS~~flgg~V~YS~~sK~~lLgv~~-~--------gaV----S~etA~~MA~~a~~r~~~ls~~~~~digIs~TGiaG~ 106 (250)
|--+++.+-++|= -..-..+|++.| + ++- ..++|.-||++++++. ++|+|||.|.-.|-
T Consensus 40 ~~v~V~asmFiPs-~~g~~slL~i~~pePd~~~~~~K~Y~ee~D~~vA~~mA~avk~~~-------~~dI~IgTTAGiGr 111 (160)
T PF06787_consen 40 GNVSVVASMFIPS-ISGAESLLNIEPPEPDYVIKYIKAYNEENDLEVAKLMAKAVKNKL-------NCDIGIGTTAGIGR 111 (160)
T ss_pred CcEEEEEeecccc-HHHHHHHhCCCCCCcchhhccceeecccccHHHHHHHHHHHHHHh-------CCCeeeecccccCC
Confidence 4444555555553 334457888843 3 333 4579999999999998 79999999976553
Q ss_pred CCCCCCCceEEEEEEeCCeeEEEEEEeCCCch
Q 025593 107 THPKLGDHRFHLSTRTSDRLWVSTVTLSKGLR 138 (250)
Q Consensus 107 ~~~kpG~htvyIai~~~~~~~~~~~~l~~~~R 138 (250)
| =|++.+.+...+..-...++.|
T Consensus 112 -----G----aI~I~t~~~~~~~tSdv~adL~ 134 (160)
T PF06787_consen 112 -----G----AICIVTDKNEYVFTSDVYADLR 134 (160)
T ss_pred -----c----eEEEEeCCcEEEEecceehhHh
Confidence 3 2677777765555444444433
No 21
>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only]
Probab=90.09 E-value=0.21 Score=46.16 Aligned_cols=29 Identities=45% Similarity=0.647 Sum_probs=25.4
Q ss_pred CCCeEEEecCCCCcCchhHHHHHHHHHhc
Q 025593 211 NEERKIILSGSFNPLHDGHLKLLEVATRN 239 (250)
Q Consensus 211 ~~~~~~i~~GsFnP~h~gHl~~~~~a~~~ 239 (250)
....++.+|||||-+|+||-.|...|+.+
T Consensus 140 ~~~~~~alGGTFDrLH~gHKvLLs~aa~l 168 (293)
T KOG3351|consen 140 NKFMVVALGGTFDRLHDGHKVLLSVAAEL 168 (293)
T ss_pred hcceeEEeccchhhhccchHHHHHHHHHH
Confidence 45567899999999999999999988876
No 22
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=89.93 E-value=0.28 Score=47.47 Aligned_cols=29 Identities=31% Similarity=0.576 Sum_probs=26.7
Q ss_pred CCCeEEEecCCCCcCchhHHHHHHHHHhc
Q 025593 211 NEERKIILSGSFNPLHDGHLKLLEVATRN 239 (250)
Q Consensus 211 ~~~~~~i~~GsFnP~h~gHl~~~~~a~~~ 239 (250)
...++++..|.||.+|.||+.+.++|.+.
T Consensus 338 ~~~~iv~~~G~fD~~H~GH~~~l~~a~~~ 366 (473)
T PRK11316 338 RGEKIVMTNGCFDILHAGHVSYLANARKL 366 (473)
T ss_pred cCCeEEEEecccccCCHHHHHHHHHHHHh
Confidence 45689999999999999999999999988
No 23
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=88.47 E-value=0.45 Score=46.71 Aligned_cols=31 Identities=26% Similarity=0.523 Sum_probs=28.2
Q ss_pred cCCCCeEEEecCCCCcCchhHHHHHHHHHhc
Q 025593 209 VFNEERKIILSGSFNPLHDGHLKLLEVATRN 239 (250)
Q Consensus 209 ~~~~~~~~i~~GsFnP~h~gHl~~~~~a~~~ 239 (250)
..+..+++...|+||=+|.||+.+.++|.++
T Consensus 247 p~~~~~iVyv~G~FDlfH~GHi~~L~~Ak~l 277 (418)
T PLN02406 247 PGPDARIVYIDGAFDLFHAGHVEILRLARAL 277 (418)
T ss_pred CCCCCeEEEECCeeccCCHHHHHHHHHHHHh
Confidence 3468889999999999999999999999987
No 24
>PLN02413 choline-phosphate cytidylyltransferase
Probab=85.54 E-value=1.2 Score=41.94 Aligned_cols=31 Identities=23% Similarity=0.361 Sum_probs=27.4
Q ss_pred cCCCCeEEEecCCCCcCchhHHHHHHHHHhc
Q 025593 209 VFNEERKIILSGSFNPLHDGHLKLLEVATRN 239 (250)
Q Consensus 209 ~~~~~~~~i~~GsFnP~h~gHl~~~~~a~~~ 239 (250)
.++...+++..|.||=+|.||+.+.++|.++
T Consensus 23 ~~~r~~rVyvdG~FDLfH~GHir~L~qAK~l 53 (294)
T PLN02413 23 PSDRPVRVYADGIYDLFHFGHARSLEQAKKL 53 (294)
T ss_pred CCCCceEEEEeCchhhCCHHHHHHHHHHHHh
Confidence 3456677889999999999999999999998
No 25
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=84.32 E-value=1.4 Score=42.02 Aligned_cols=31 Identities=32% Similarity=0.579 Sum_probs=28.6
Q ss_pred cCCCCeEEEecCCCCcCchhHHHHHHHHHhc
Q 025593 209 VFNEERKIILSGSFNPLHDGHLKLLEVATRN 239 (250)
Q Consensus 209 ~~~~~~~~i~~GsFnP~h~gHl~~~~~a~~~ 239 (250)
..+..++...-|.||=.|.||+...|.|.++
T Consensus 194 p~p~~kvVYvdGaFDLFH~GHl~~Le~ak~l 224 (358)
T KOG2803|consen 194 PKPTDKVVYVDGAFDLFHAGHLDFLEKAKRL 224 (358)
T ss_pred CCCCCcEEEEcCchhhhccchHHHHHHHHhc
Confidence 4577889999999999999999999999998
No 26
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=77.58 E-value=2.5 Score=41.13 Aligned_cols=30 Identities=20% Similarity=0.162 Sum_probs=26.1
Q ss_pred CCCCeEEEecCCCCcCchhHHHHHHHHHhc
Q 025593 210 FNEERKIILSGSFNPLHDGHLKLLEVATRN 239 (250)
Q Consensus 210 ~~~~~~~i~~GsFnP~h~gHl~~~~~a~~~ 239 (250)
+.++++.+---|+||+|.||-.|.++|++.
T Consensus 180 ~kgwk~vvafQTRNp~HraHEyl~K~Al~~ 209 (397)
T COG2046 180 EKGWKTVVAFQTRNPPHRAHEYLQKRALEK 209 (397)
T ss_pred hcCCeEEEEEecCCCchHHHHHHHHHHHHh
Confidence 456777777789999999999999999998
No 27
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=65.60 E-value=4.4 Score=38.91 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=19.3
Q ss_pred cCCCCcCchhHHHHHHHHHhc
Q 025593 219 SGSFNPLHDGHLKLLEVATRN 239 (250)
Q Consensus 219 ~GsFnP~h~gHl~~~~~a~~~ 239 (250)
-=|-||+|.||..|.+.|++.
T Consensus 162 fqtrnP~HraHe~l~~~a~~~ 182 (353)
T cd00517 162 FQTRNPMHRAHEELMKRAAEK 182 (353)
T ss_pred eecCCCCchhhHHHHHHHHHH
Confidence 357899999999999999998
No 28
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=60.35 E-value=6.5 Score=39.95 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=19.2
Q ss_pred cCCCCcCchhHHHHHHHHHhc
Q 025593 219 SGSFNPLHDGHLKLLEVATRN 239 (250)
Q Consensus 219 ~GsFnP~h~gHl~~~~~a~~~ 239 (250)
-=|-||+|.+|..|++.|++.
T Consensus 192 fqtrnP~Hr~He~l~~~a~~~ 212 (568)
T PRK05537 192 FQTRNPLHRAHEELTKRAARE 212 (568)
T ss_pred EecCCCCcHHHHHHHHHHHHh
Confidence 346899999999999999998
No 29
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=57.74 E-value=8.7 Score=37.46 Aligned_cols=21 Identities=29% Similarity=0.211 Sum_probs=19.0
Q ss_pred cCCCCcCchhHHHHHHHHHhc
Q 025593 219 SGSFNPLHDGHLKLLEVATRN 239 (250)
Q Consensus 219 ~GsFnP~h~gHl~~~~~a~~~ 239 (250)
-=|-||+|.||..|.+.|.+.
T Consensus 192 fqTrnP~HraHe~l~~~a~e~ 212 (391)
T PRK04149 192 FQTRNPPHRAHEYLQKCALEI 212 (391)
T ss_pred eecCCCCchHHHHHHHHHHHh
Confidence 346899999999999999998
No 30
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=42.75 E-value=25 Score=26.74 Aligned_cols=46 Identities=22% Similarity=0.272 Sum_probs=24.6
Q ss_pred EEEEeCCeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhcCCCCcc
Q 025593 118 LSTRTSDRLWVSTVTLSKGLRTREQEDKVSSHLLLKAMASACKVPATF 165 (250)
Q Consensus 118 Iai~~~~~~~~~~~~l~~~~R~r~~e~~~~s~lL~~~La~~~~v~~~~ 165 (250)
.++...+.......+...+ |+..+.+++- ..|.+.|++.|+++.+.
T Consensus 21 lg~~Rs~~~v~I~It~~~g-Rs~e~K~~ly-~~l~~~L~~~~gi~p~D 66 (82)
T PF14552_consen 21 LGIDRSDDFVIIQITSGAG-RSTEQKKALY-RALAERLAEKLGIRPED 66 (82)
T ss_dssp S--TS-TT-EEEEEEECS----HHHHHHHH-HHHHHHHHHHH---GGG
T ss_pred CCCCCCCCEEEEEEEECCC-CCHHHHHHHH-HHHHHHHHHHcCCCHHH
Confidence 3444444455555666667 8888888874 66778889999998763
No 31
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=37.95 E-value=1.6e+02 Score=28.30 Aligned_cols=54 Identities=24% Similarity=0.156 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCC----------CCCeEEEEEceecCC------CCCCCCCceEEEEE
Q 025593 67 QFCSQQTAVNMALLAYNRALKLSRP----------GAPVLGVGFTGALAS------THPKLGDHRFHLST 120 (250)
Q Consensus 67 gaVS~etA~~MA~~a~~r~~~ls~~----------~~~digIs~TGiaG~------~~~kpG~htvyIai 120 (250)
.+=|++.|++..++.++.+.++.-| ......+++.|++.. ...||||-.+|++=
T Consensus 102 sa~s~d~~~ei~eglr~~a~kfgvpivGGhthpd~~y~vl~v~i~gl~~~e~Ii~s~~Ak~GD~lI~~~d 171 (324)
T COG2144 102 SAKSEDQAREILEGLRKGARKFGVPIVGGHTHPDTPYCVLDVVIGGLIAEEPIITSGTAKPGDLLIFVGD 171 (324)
T ss_pred ecCCHHHHHHHHHHHHHHHHhcCCceecCccCCCCCCceeeeEEecccccccccccCCCCcCCEEEEEec
Confidence 5679999999999999988776543 124577888887772 34588977766553
No 32
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=33.28 E-value=50 Score=31.67 Aligned_cols=29 Identities=24% Similarity=0.233 Sum_probs=23.4
Q ss_pred CCCeEEEecCCCCcCchhHHHHHHHHHhc
Q 025593 211 NEERKIILSGSFNPLHDGHLKLLEVATRN 239 (250)
Q Consensus 211 ~~~~~~i~~GsFnP~h~gHl~~~~~a~~~ 239 (250)
++++||-.==.=||.++||..|+|+|+.+
T Consensus 143 ~gkkIgaIVMNANPFTLGH~YLVEqAaaq 171 (352)
T COG3053 143 PGKKIGAIVMNANPFTLGHRYLVEQAAAQ 171 (352)
T ss_pred CCCeeEEEEEeCCCccchhHHHHHHHHhh
Confidence 45556555556699999999999999999
No 33
>PF12119 DUF3581: Protein of unknown function (DUF3581); InterPro: IPR021974 This family consists of uncharacterised bacterial proteins.
Probab=30.98 E-value=20 Score=32.38 Aligned_cols=9 Identities=67% Similarity=1.483 Sum_probs=7.9
Q ss_pred cCCCCcCch
Q 025593 219 SGSFNPLHD 227 (250)
Q Consensus 219 ~GsFnP~h~ 227 (250)
-|.|||||.
T Consensus 29 AgDFNPIHD 37 (218)
T PF12119_consen 29 AGDFNPIHD 37 (218)
T ss_pred ccCCCccCC
Confidence 489999997
No 34
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=29.16 E-value=29 Score=34.44 Aligned_cols=17 Identities=41% Similarity=0.817 Sum_probs=14.5
Q ss_pred CcCchhHHHHHHHHHhc
Q 025593 223 NPLHDGHLKLLEVATRN 239 (250)
Q Consensus 223 nP~h~gHl~~~~~a~~~ 239 (250)
||+|+||-.|++...+.
T Consensus 425 npvhnghallm~dt~~~ 441 (627)
T KOG4238|consen 425 NPVHNGHALLMQDTRRR 441 (627)
T ss_pred CccccchhhHhHhHHHH
Confidence 99999999998877655
No 35
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=25.58 E-value=3.3e+02 Score=27.38 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=40.3
Q ss_pred CCeEEEEEceecCCCCCCCCCceEEEEEEeCCeeEEEEEEeCCCchhHHHHHHHHHHHHHHHHHh
Q 025593 93 APVLGVGFTGALASTHPKLGDHRFHLSTRTSDRLWVSTVTLSKGLRTREQEDKVSSHLLLKAMAS 157 (250)
Q Consensus 93 ~~digIs~TGiaG~~~~kpG~htvyIai~~~~~~~~~~~~l~~~~R~r~~e~~~~s~lL~~~La~ 157 (250)
++-+.|==+|..++.+.+||+.-+|||++.+..- .+...|+|.+-++...++|-.++++
T Consensus 168 d~~~~vDWSga~~~~~~~~~~d~Iwi~v~~~~~~------~~~~~~tR~~a~~~L~~~~~~~~~~ 226 (452)
T PRK14495 168 DTVIAVDWSGASVPSPRKPSSDAIWIGVASPLGE------TVSYHRTRADAEAHLNDLFAFELTA 226 (452)
T ss_pred CeEEEEEcCCCCCCCCCCCCCCeEEEEEecCCcc------cccccccHHHHHHHHHHHHHHHHhC
Confidence 6778888888888766688888899999955421 1223366666666666666666664
No 36
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=25.20 E-value=65 Score=32.17 Aligned_cols=29 Identities=28% Similarity=0.500 Sum_probs=25.9
Q ss_pred CCCeEEEecCCCCcCchhHHHHHHHHHhc
Q 025593 211 NEERKIILSGSFNPLHDGHLKLLEVATRN 239 (250)
Q Consensus 211 ~~~~~~i~~GsFnP~h~gHl~~~~~a~~~ 239 (250)
..++++.--|-||=+|-||....++|..+
T Consensus 330 ~~~~vvfTNGcFDIlH~GHvsyL~~Ar~l 358 (467)
T COG2870 330 AGKKVVFTNGCFDILHAGHVTYLAQARAL 358 (467)
T ss_pred hcCeEEEecchhhhccccHHHHHHHHHhh
Confidence 45568888999999999999999999998
No 37
>PF14459 Prok-E2_C: Prokaryotic E2 family C
Probab=24.34 E-value=1.1e+02 Score=25.24 Aligned_cols=49 Identities=31% Similarity=0.442 Sum_probs=0.0
Q ss_pred hCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEEce-------ecCCCCCCC--CCceEEEE
Q 025593 61 LGQIPNQFCSQQTAVNMALLAYNRALKLSRPGAPVLGVGFTG-------ALASTHPKL--GDHRFHLS 119 (250)
Q Consensus 61 Lgv~~~gaVS~etA~~MA~~a~~r~~~ls~~~~~digIs~TG-------iaG~~~~kp--G~htvyIa 119 (250)
|-+.|.|.-|.-.|++|++-|+..= .+|+|.-.| ++|+++++- - ++|+|
T Consensus 30 l~ilp~g~as~~~a~~l~~LA~sIN--------p~I~i~r~G~s~~~clV~G~trp~~sc~--~fFiG 87 (131)
T PF14459_consen 30 LCILPSGEASSFQAQNLQSLARSIN--------PRIEIRRSGSSPMHCLVIGSTRPKISCP--RFFIG 87 (131)
T ss_pred EEEeecchhHHHHHHHHHHHHHhcC--------CCeEEEecCCCceEEEEecCCCCCcccc--eEEEc
No 38
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=23.18 E-value=1e+02 Score=28.96 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=25.9
Q ss_pred hHHHHHHhcCceeEEEcCCCCccccCCCCeEEEecCCCCcCchhHHHHHHHHHhc
Q 025593 185 DQELEQIINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVATRN 239 (250)
Q Consensus 185 ~~~l~~ll~g~i~~~~~~~~~~~~~~~~~~~~i~~GsFnP~h~gHl~~~~~a~~~ 239 (250)
+++|+++++.+--+.+ -.|+-|.. ++|+||+.-+.....+
T Consensus 18 ~~el~~~l~~~~~~~v-------------~~G~~PTG--~lHLG~~~~~~~~~~l 57 (329)
T PRK08560 18 EEELRELLESKEEPKA-------------YIGFEPSG--KIHLGHLLTMNKLADL 57 (329)
T ss_pred HHHHHHHHhCCCCCEE-------------EEccCCCC--cchhhhhHHHHHHHHH
Confidence 4789999873322112 23666654 5999999877776665
No 39
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=21.33 E-value=74 Score=30.31 Aligned_cols=53 Identities=15% Similarity=0.230 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHcCCCeEEEEeccchH--HHHhHhcCCCCccccc--ccceeecCHHHHH
Q 025593 3 DACIRGVVEAIHASPTQAVVYIAGGAS--QALGMLMSIPGATNTV--LEAVVPYSRMSMI 58 (250)
Q Consensus 3 ~~~~~~~v~~ih~s~~~~v~s~TGG~~--~~~~~Lt~vPGsS~~f--lgg~V~YS~~sK~ 58 (250)
+.+++.--+.++.+ |+|.+||||-= .+++||. .-|--.|+ .||++.|-.+...
T Consensus 160 P~~v~~~~~~~~~K--kVvmyCTGGIRCEKas~~m~-~~GF~eVyhL~GGIl~Y~e~~~~ 216 (308)
T COG1054 160 PAWVEENLDLLKDK--KVVMYCTGGIRCEKASAWMK-ENGFKEVYHLEGGILKYLEDVGT 216 (308)
T ss_pred HHHHHHHHHhccCC--cEEEEcCCceeehhhHHHHH-HhcchhhhcccchHHHHhhhcCc
Confidence 45666666666666 99999999941 1244554 45666553 5788888777644
No 40
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=21.20 E-value=1.1e+02 Score=24.91 Aligned_cols=26 Identities=15% Similarity=0.241 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHcCCCeEE-EEeccch
Q 025593 3 DACIRGVVEAIHASPTQAV-VYIAGGA 28 (250)
Q Consensus 3 ~~~~~~~v~~ih~s~~~~v-~s~TGG~ 28 (250)
+.....+.+++...+++++ +|.|||.
T Consensus 10 d~Da~~l~~~L~~~g~~~TkLsstGGF 36 (109)
T PF06153_consen 10 DEDADDLSDALNENGFRVTKLSSTGGF 36 (109)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEEEETT
T ss_pred HhhHHHHHHHHHHCCceEEEEecccce
Confidence 5678899999999999999 7999996
No 41
>PLN02557 phosphoribosylformylglycinamidine cyclo-ligase
Probab=20.48 E-value=1.9e+02 Score=28.17 Aligned_cols=68 Identities=12% Similarity=0.099 Sum_probs=46.4
Q ss_pred HHHHHHHcCCCeEEEEeccchHH-HHhHhcCCCCcccccccceeecCHHHH--HHHhCCCCC--------C-----CCCH
Q 025593 8 GVVEAIHASPTQAVVYIAGGASQ-ALGMLMSIPGATNTVLEAVVPYSRMSM--IQLLGQIPN--------Q-----FCSQ 71 (250)
Q Consensus 8 ~~v~~ih~s~~~~v~s~TGG~~~-~~~~Lt~vPGsS~~flgg~V~YS~~sK--~~lLgv~~~--------g-----aVS~ 71 (250)
.+.+.+..-.++..-.+|||+.. .+.++.. .|..-.+-..-++-....| .+.+|++|+ | +|++
T Consensus 272 ~vl~l~~~~~V~am~diTgGGl~~~L~e~~~-~g~g~~Id~~~~pv~~~f~~i~~~g~i~~~em~~tfN~GiGmv~~V~~ 350 (379)
T PLN02557 272 QVLDIISKGGVKGIAHITGGGFTDNIPRVFP-KGLGAKIRTGSWEVPPLFKWLQEAGNIEDAEMRRTFNMGIGMVLVVSP 350 (379)
T ss_pred HHHHHhhcCCeEEEEcCCcchHhhhhHHHhc-CCeeEEEeCCCCCCCHHHHHHHHhCCCCHHHHHHhcCCcccEEEEECH
Confidence 33344444457778899999963 2344443 5777777778888887776 577888873 6 5898
Q ss_pred HHHHH
Q 025593 72 QTAVN 76 (250)
Q Consensus 72 etA~~ 76 (250)
+.|.+
T Consensus 351 ~~a~~ 355 (379)
T PLN02557 351 EAADR 355 (379)
T ss_pred HHHHH
Confidence 88776
No 42
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=20.01 E-value=1.2e+02 Score=22.40 Aligned_cols=22 Identities=14% Similarity=0.377 Sum_probs=18.2
Q ss_pred HHHHHHHHcCCCeEEEEeccch
Q 025593 7 RGVVEAIHASPTQAVVYIAGGA 28 (250)
Q Consensus 7 ~~~v~~ih~s~~~~v~s~TGG~ 28 (250)
...|+.||+++.++++|+..|-
T Consensus 39 ~~~I~~L~~~G~~vicY~s~Gs 60 (74)
T PF03537_consen 39 KEEIARLKAQGKKVICYFSIGS 60 (74)
T ss_dssp HHHHHHHHHTT-EEEEEEESSE
T ss_pred HHHHHHHHHCCCEEEEEEeCce
Confidence 4578899999999999999985
Done!