BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025594
(250 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 44/68 (64%)
Query: 32 VLRILSCFKLNPFEYLNLPFDATPDDIKKQYRKLSLLVHPDKCKHPQAKEAFGALAKAQQ 91
+L+ LS +P+ L + A+ DIKK Y+KL+ HPDK K P A++ F ++KA +
Sbjct: 8 ILQSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYE 67
Query: 92 LLSDEQER 99
+LS+E++R
Sbjct: 68 ILSNEEKR 75
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 34 RILSCFKLNPFEYLNLPFDATPDDIKKQYRKLSLLVHPDKC-KHPQAKEAFGALAKAQQL 92
R LS + + L L +AT DDIKK YRKL+L HPDK +P+A + F + A +
Sbjct: 10 RSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAI 69
Query: 93 LSDEQERD 100
L+D +R+
Sbjct: 70 LTDATKRN 77
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 48.5 bits (114), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 44 FEYLNLPFDATPDDIKKQYRKLSLLVHPDKCKHPQAKEAFGALAKAQQLLSDEQER 99
+E L + A+ +D+KK YR+L+L HPDK P A EAF A+ A +LS+ ++R
Sbjct: 10 YEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKR 65
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 34/50 (68%)
Query: 44 FEYLNLPFDATPDDIKKQYRKLSLLVHPDKCKHPQAKEAFGALAKAQQLL 93
++ L + A+ D++ K YRKL++L+HPDKC P +++AF A+ A+ L
Sbjct: 30 WDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTAL 79
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 6/62 (9%)
Query: 42 NPFEYLNLPFDATPDDIKKQYRKLSLLVHPDKCKHPQAKEA----FGALAKAQQLLSDEQ 97
N +E L + A+P+DIKK YRKL+L HPD K+P KE F +++A ++LSD +
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPD--KNPDNKEEAEKKFKLVSEAYEVLSDSK 67
Query: 98 ER 99
+R
Sbjct: 68 KR 69
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 38/57 (66%)
Query: 44 FEYLNLPFDATPDDIKKQYRKLSLLVHPDKCKHPQAKEAFGALAKAQQLLSDEQERD 100
++ L L A+ ++IK+ YR+ +L HPDK K P A+E F +A+A +LSD ++R+
Sbjct: 6 YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKRE 62
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 6/68 (8%)
Query: 37 SCFKLNPFEYLNLPFDATPDDIKKQYRKLSLLVHPDKCKHPQAKEA----FGALAKAQQL 92
S ++ +E L++P A+ + IKK YRKL+L HPD K+P+ KE F +A+A ++
Sbjct: 5 SSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPD--KNPENKEEAERRFKQVAEAYEV 62
Query: 93 LSDEQERD 100
LSD ++RD
Sbjct: 63 LSDAKKRD 70
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 44/69 (63%), Gaps = 7/69 (10%)
Query: 44 FEYLNLPFDATPDDIKKQYRKLSLLVHPDKCKHPQAKEAFGALAKAQQLLSDEQERDYIL 103
++ L + DA+ +++KK YRK++L HPD K+P E F +++A ++LSDE++R
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPD--KNPDGAEQFKQISQAYEVLSDEKKR---- 64
Query: 104 TQVHAAKGE 112
Q++ GE
Sbjct: 65 -QIYDQGGE 72
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 44 FEYLNLPFDATPDDIKKQYRKLSLLVHPDKCKHPQAKEAFGALAKAQQLLSDEQERDYIL 103
++ L +P A+ IKK + KL++ HPDK K P A+ F +A+A + LSD R
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYD 69
Query: 104 TQVHAA 109
T H+A
Sbjct: 70 TLGHSA 75
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 44 FEYLNLPFDATPDDIKKQYRKLSLLVHPDKCKH-PQAKEAFGALAKAQQLLSDEQER 99
++ L +P +A+ +IKK Y +L+ HPD K P+AKE F LA+A ++LSDE +R
Sbjct: 10 YQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKR 66
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 40/61 (65%), Gaps = 6/61 (9%)
Query: 44 FEYLNLPFDATPDDIKKQYRKLSLLVHPDKCKHPQAKE----AFGALAKAQQLLSDEQER 99
+E L++P A+ DDIKK YR+ +L HPD K+P KE F +A+A ++LSD+ +R
Sbjct: 5 YEILDVPRSASADDIKKAYRRKALQWHPD--KNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62
Query: 100 D 100
+
Sbjct: 63 E 63
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 44 FEYLNLPFDATPDDIKKQYRKLSLLVHPDKCKHPQAKEAFGALAKAQQLLSDEQERD 100
++ L + +AT +++KK YRKL+L HPD K+P E F +++A ++LSD ++R+
Sbjct: 9 YDVLGVKPNATQEELKKAYRKLALKYHPD--KNPNEGEKFKQISQAYEVLSDAKKRE 63
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 58 IKKQYRKLSLLVHPDKCKHPQAKEAFGALAKAQQLLSDEQER 99
IK YR+L+ HPD K P A+ F +A+A ++LSDEQ R
Sbjct: 22 IKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRR 63
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 40 KLNPFEYLNLPFDATPDDIKKQYRKLSLLVHPDKCKHPQAKEA-FGALAKAQQLLSDEQE 98
K + +E L + A +I+K Y++L++ HPD+ + + EA F + +A ++L+D Q+
Sbjct: 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 99 RDYILTQVHAA 109
R HAA
Sbjct: 62 RAAYDQYGHAA 72
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 58 IKKQYRKLSLLVHPDKCKHPQAKEAFGALAKAQQLLSDEQER 99
IK YR+L+ HPD K A+ F LA+A ++L DEQ R
Sbjct: 45 IKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRR 86
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 40 KLNPFEYLNLPFDATPDDIKKQYRKLSLLVHPDKCKHPQAKEA-FGALAKAQQLLSDEQE 98
K + +E L + A +I+K Y++L++ HPD+ + + EA F + +A ++L+D Q+
Sbjct: 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 99 RDYILTQVHAA 109
R HAA
Sbjct: 62 RAAYDQYGHAA 72
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 40 KLNPFEYLNLPFDATPDDIKKQYRKLSLLVHPDKCKHPQAKEA-FGALAKAQQLLSDEQE 98
K + +E L + A +I+K Y++L++ HPD+ + + EA F + +A ++L+D Q+
Sbjct: 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 99 RDYILTQVHAA 109
R HAA
Sbjct: 62 RAAYDQYGHAA 72
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 42 NPFEYLNLPFDATPDDIKKQYRKLSLLVHPDKC-KHPQAKEAFGALAKAQQLLSDEQER 99
N + L + A+ +I++ ++KL+L +HPDK +P A F + +A ++L DE R
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 61
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 53 ATPDDIKKQYRKLSLLVHPDKC 74
TP+ +KK YRK L+VHPDK
Sbjct: 61 VTPEQVKKVYRKAVLVVHPDKA 82
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 53 ATPDDIKKQYRKLSLLVHPDKC 74
TP+ +KK YRK L+VHPDK
Sbjct: 129 VTPEQVKKVYRKAVLVVHPDKA 150
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 53 ATPDDIKKQYRKLSLLVHPDKC 74
TP+ +KK YRK L+VHPDK
Sbjct: 48 VTPEQVKKVYRKAVLVVHPDKA 69
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 42 NPFEYLNLPFDATPDDIKKQYRKLSLLVHPDKC-KHPQAKEAFGALAKAQQLLSDEQER 99
N + L + A+ +I++ ++KL+L +HPDK +P A F + +A ++L DE R
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 80
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 44 FEYLNLPFDATPDDIKKQYRKLSLLVHPDKCKHPQA-KEAFGALAKAQQLLSDEQERD 100
++ L + A ++KK YRK +L HPDK P E F +++A ++L+D Q+R+
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDK---PTGDTEKFKEISEAFEILNDPQKRE 65
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 58 IKKQYRKLSLLVHPDKC-KHPQAKEAFGALAKAQQLLSDEQER 99
I +++ +L HPDK ++P+A E F L KA+++L++E+ R
Sbjct: 37 ILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESR 79
>pdb|2QWN|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi State
Length = 94
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 53 ATPDDIKKQYRKLSLLVHPDKC 74
TP+ +KK YRK L+VHP K
Sbjct: 46 VTPEQVKKVYRKAVLVVHPCKA 67
>pdb|2QWO|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #1
pdb|2QWP|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #2
pdb|2QWQ|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Hydrolyzed Form
pdb|2QWR|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Intact Form
Length = 92
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 53 ATPDDIKKQYRKLSLLVHPDKC 74
TP+ +KK YRK L+VHP K
Sbjct: 45 VTPEQVKKVYRKAVLVVHPCKA 66
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 44 FEYLNLPFDATPDDIKKQYRKLSLLVHPDK-CKHPQAKEAFGALAKAQQLLSDEQER 99
++ L +P AT IK Y + L HPD+ +A E F +++A +L R
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLR 76
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 44 FEYLNLPFDATPDDIKKQYRKLSLLVHPDK 73
+ L A D+K++Y+KL LL HPDK
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDK 48
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 44 FEYLNLPFDATPDDIKKQYRKLSLLVHPDKCKH----PQAKEAFGALAKAQQLLSDEQER 99
++ L + +A +I K YRKL+L HPD ++ +A++ F +A A+++LSD + R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEXR 444
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 44 FEYLNLPFDATPDDIKKQYRKLSLLVHPDKCKH----PQAKEAFGALAKAQQLLSDEQER 99
++ L + +A +I K YRKL+L HPD ++ +A++ F +A A+++LSD + R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 53 ATPDDIKKQYRKLSLLVHPDK 73
A D+K++Y+KL L+ HPDK
Sbjct: 22 ANISDLKQKYQKLILMYHPDK 42
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,118,067
Number of Sequences: 62578
Number of extensions: 214083
Number of successful extensions: 539
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 505
Number of HSP's gapped (non-prelim): 37
length of query: 250
length of database: 14,973,337
effective HSP length: 96
effective length of query: 154
effective length of database: 8,965,849
effective search space: 1380740746
effective search space used: 1380740746
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)