Query 025596
Match_columns 250
No_of_seqs 78 out of 80
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 13:32:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025596.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025596hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kdx_B CREB; complex (transcri 46.1 9.3 0.00032 23.8 1.5 13 34-46 12-24 (28)
2 2jx3_A Protein DEK; alpha heli 25.2 47 0.0016 26.7 2.9 33 39-73 77-109 (131)
3 1oey_A P67-PHOX, neutrophil cy 23.8 46 0.0016 25.0 2.5 20 33-52 21-40 (83)
4 3lfp_A CSP231I C protein; tran 19.4 62 0.0021 22.9 2.4 52 30-98 38-89 (98)
5 1rp3_A RNA polymerase sigma fa 19.4 2.1E+02 0.0071 22.5 5.7 36 38-73 21-56 (239)
6 2al3_A TUG long isoform; TUG U 19.2 48 0.0017 25.3 1.8 18 35-52 29-46 (90)
7 3ic3_A Putative pyruvate dehyd 17.8 57 0.002 25.6 1.9 14 203-216 44-57 (101)
8 1n3k_A Astrocytic phosphoprote 16.4 1.5E+02 0.0051 23.7 4.2 14 37-50 3-16 (130)
9 2q1z_A RPOE, ECF SIGE; ECF sig 15.1 1.1E+02 0.0037 23.4 3.0 35 37-74 35-69 (184)
10 2vzs_A CSXA, EXO-beta-D-glucos 14.9 62 0.0021 33.6 1.9 37 14-51 374-411 (1032)
No 1
>1kdx_B CREB; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Rattus norvegicus}
Probab=46.11 E-value=9.3 Score=23.75 Aligned_cols=13 Identities=46% Similarity=0.810 Sum_probs=11.1
Q ss_pred CCccHHHHHHHHH
Q 025596 34 WRPSYRNVLLAVR 46 (250)
Q Consensus 34 ~~~sYReVLldVc 46 (250)
++||||.||-|..
T Consensus 12 rrpSYrkIlndls 24 (28)
T 1kdx_B 12 RRPSYRKILNDLS 24 (28)
T ss_dssp TSTHHHHHHHHHH
T ss_pred cCchHHHHHHhhc
Confidence 5899999998864
No 2
>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens}
Probab=25.17 E-value=47 Score=26.67 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=26.0
Q ss_pred HHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhh
Q 025596 39 RNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQE 73 (250)
Q Consensus 39 ReVLldVc~kLkV~~s~~lsT~dLEaeIfl~lL~~ 73 (250)
.+-|.++|+=|+++++. +.+||-+.|+-.|.+=
T Consensus 77 ~~~L~~~c~iL~l~~~g--~keelv~ril~FL~~P 109 (131)
T 2jx3_A 77 NAMLKSICEVLDLERSG--VNSELVKRILNFLMHP 109 (131)
T ss_dssp HHHHHHHHHTTTCCSCS--CHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHCCCCCC--cHHHHHHHHHHHHhCc
Confidence 46788999999999984 4788888887766543
No 3
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=23.76 E-value=46 Score=24.98 Aligned_cols=20 Identities=25% Similarity=0.167 Sum_probs=18.6
Q ss_pred CCCccHHHHHHHHHhhcCCC
Q 025596 33 GWRPSYRNVLLAVRKNLNIP 52 (250)
Q Consensus 33 G~~~sYReVLldVc~kLkV~ 52 (250)
-.+.+|++..-.||+||+++
T Consensus 21 p~~~~y~~L~~~l~~kL~l~ 40 (83)
T 1oey_A 21 QPGLPYSQVRDMVSKKLELR 40 (83)
T ss_dssp CTTCCHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHhCCC
Confidence 56999999999999999997
No 4
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=19.42 E-value=62 Score=22.95 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=32.7
Q ss_pred hhcCCCccHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhhhhccccCCCCCcccCCCchhhhhHH
Q 025596 30 TLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSL 98 (250)
Q Consensus 30 ~lRG~~~sYReVLldVc~kLkV~~s~~lsT~dLEaeIfl~lL~~~~~~~~~~~~~awek~~~~~e~~sl 98 (250)
.-+|....--+.|..+|+.|+|+.+.=+..++-..++ +. .+.+++++ +++.+
T Consensus 38 ~E~g~~~p~~~~l~~la~~l~v~~~~l~~~~~~~~~~----~~------------~~~~l~~~-~~~~~ 89 (98)
T 3lfp_A 38 YEKGKHAPDFEMANRLAKVLKIPVSYLYTPEDDLAQI----IL------------TWNELNEQ-ERKRI 89 (98)
T ss_dssp HHHTSSCCCHHHHHHHHHHHTSCGGGGGCCCHHHHHH----HH------------HHTTCCHH-HHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHHCcCHHHHhCCChhHHHH----HH------------HHHhCCHH-HHHHH
Confidence 3368654556678899999999987655443333332 22 35558887 66654
No 5
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=19.36 E-value=2.1e+02 Score=22.54 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhh
Q 025596 38 YRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQE 73 (250)
Q Consensus 38 YReVLldVc~kLkV~~s~~lsT~dLEaeIfl~lL~~ 73 (250)
|...+..+|.++.-.+......+|+-+|.|+.+++.
T Consensus 21 ~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~l~~~ 56 (239)
T 1rp3_A 21 YLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKA 56 (239)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 566666677766433456778999999999999987
No 6
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=19.22 E-value=48 Score=25.33 Aligned_cols=18 Identities=11% Similarity=0.062 Sum_probs=16.1
Q ss_pred CccHHHHHHHHHhhcCCC
Q 025596 35 RPSYRNVLLAVRKNLNIP 52 (250)
Q Consensus 35 ~~sYReVLldVc~kLkV~ 52 (250)
.-+-.|||.++|+|+|++
T Consensus 29 ~t~L~~VL~eaC~K~gl~ 46 (90)
T 2al3_A 29 STVLLQVLEDTCRRQDFN 46 (90)
T ss_dssp TSBHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHhCCC
Confidence 557889999999999996
No 7
>3ic3_A Putative pyruvate dehydrogenase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE BGC; 1.80A {Rhodopseudomonas palustris}
Probab=17.78 E-value=57 Score=25.60 Aligned_cols=14 Identities=36% Similarity=0.935 Sum_probs=13.0
Q ss_pred HhHHHHHHHHHHHH
Q 025596 203 LGPVLWGTFLADVV 216 (250)
Q Consensus 203 lGPilW~w~~aDL~ 216 (250)
=.|-.||.+++||+
T Consensus 44 ~~p~~WG~lLaDla 57 (101)
T 3ic3_A 44 EDPEMWGLLLVDIA 57 (101)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 47999999999999
No 8
>1n3k_A Astrocytic phosphoprotein PEA-15; death effector domain, six helix bundle, apoptosis; NMR {Cricetulus griseus} SCOP: a.77.1.4
Probab=16.43 E-value=1.5e+02 Score=23.73 Aligned_cols=14 Identities=21% Similarity=0.498 Sum_probs=11.9
Q ss_pred cHHHHHHHHHhhcC
Q 025596 37 SYRNVLLAVRKNLN 50 (250)
Q Consensus 37 sYReVLldVc~kLk 50 (250)
.||..|.+|.+.|.
T Consensus 3 ~fR~lL~~Ise~Lt 16 (130)
T 1n3k_A 3 EYGTLLQDLTNNIT 16 (130)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHhcC
Confidence 59999999998764
No 9
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=15.09 E-value=1.1e+02 Score=23.41 Aligned_cols=35 Identities=9% Similarity=0.078 Sum_probs=25.1
Q ss_pred cHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhhh
Q 025596 37 SYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEY 74 (250)
Q Consensus 37 sYReVLldVc~kLkV~~s~~lsT~dLEaeIfl~lL~~~ 74 (250)
.|...|..+|.++ +......+|+-+|.|+.+++..
T Consensus 35 ~~~~~l~~~~~~~---~~~~~~aeD~~Qe~~l~~~~~~ 69 (184)
T 2q1z_A 35 HFAPKVKGFLMKS---GSVASQAEECAQDVMATVWQKA 69 (184)
T ss_dssp HHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHH---cCCHhHHHHHHHHHHHHHHHhh
Confidence 3555666666665 3344568899999999999873
No 10
>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine, glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis orientalis} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2x05_A* 2x09_A* 2vzo_A 2vzt_A* 2vzv_A* 2vzu_A*
Probab=14.86 E-value=62 Score=33.58 Aligned_cols=37 Identities=8% Similarity=0.178 Sum_probs=29.6
Q ss_pred HHHHHHHhhhhhhhhhhhc-CCCccHHHHHHHHHhhcCC
Q 025596 14 ASLESRFLFLAADARSTLR-GWRPSYRNVLLAVRKNLNI 51 (250)
Q Consensus 14 ~~ie~rf~flaAD~~t~lR-G~~~sYReVLldVc~kLkV 51 (250)
+.++..++.+-.=++|.+| ++.| ..+-..+.||++|+
T Consensus 374 e~~~~dl~~~k~~g~N~iR~~h~~-~~~~fydlcDelGi 411 (1032)
T 2vzs_A 374 TAAADKLKYVLNLGLNTVRLEGHI-EPDEFFDIADDLGV 411 (1032)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESCC-CCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCEEECCCCC-CcHHHHHHHHHCCC
Confidence 3456677777666789998 5677 88999999999998
Done!