Query 025596
Match_columns 250
No_of_seqs 78 out of 80
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 13:32:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025596.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025596hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1bhga3 c.1.8.3 (A:329-632) be 42.1 3.8 0.00028 32.2 1.1 40 14-53 36-75 (304)
2 d1jz8a5 c.1.8.3 (A:334-625) be 37.5 7.4 0.00054 30.8 2.2 39 14-52 37-75 (292)
3 d2je8a5 c.1.8.3 (A:331-678) Fi 32.3 11 0.00083 29.5 2.6 36 15-51 46-84 (348)
4 d1v54m_ f.23.7.1 (M:) Mitochon 30.6 17 0.0012 23.0 2.6 14 198-211 22-35 (43)
5 d2gf5a2 a.77.1.4 (A:2-83) FADD 27.0 60 0.0043 21.8 5.4 20 37-64 2-21 (82)
6 d1yq2a5 c.1.8.3 (A:313-609) be 25.9 14 0.00099 29.5 1.9 39 14-52 36-74 (297)
7 d1umna_ a.25.1.1 (A:) Dodecame 25.7 28 0.0021 25.3 3.7 30 2-31 41-70 (151)
8 d2al3a1 d.15.1.2 (A:10-85) Tet 24.8 12 0.00088 26.2 1.2 19 35-53 20-38 (76)
9 d1d0qa_ g.41.3.2 (A:) Zinc-bin 24.1 10 0.00073 27.0 0.7 32 24-55 66-98 (102)
10 d1o9ra_ a.25.1.1 (A:) Dodecame 24.0 33 0.0024 25.3 3.8 30 2-31 55-84 (162)
11 d1oeya_ d.15.2.2 (A:) Neutroph 22.9 24 0.0018 24.9 2.6 21 33-53 21-41 (82)
12 d2f96a1 c.55.3.5 (A:19-220) Ri 22.8 21 0.0015 25.6 2.3 32 42-73 158-194 (202)
13 d2fjca1 a.25.1.1 (A:27-177) Do 22.8 32 0.0023 24.9 3.5 31 2-32 46-76 (151)
14 d1or7a2 a.177.1.1 (A:-1-111) S 22.1 33 0.0024 23.4 3.3 32 38-73 31-62 (113)
15 d2guia1 c.55.3.5 (A:7-180) N-t 22.1 13 0.00097 26.4 1.0 46 26-71 123-173 (174)
16 d1yt3a2 a.60.8.3 (A:295-375) R 20.7 21 0.0016 24.3 1.9 26 39-64 17-42 (81)
No 1
>d1bhga3 c.1.8.3 (A:329-632) beta-Glucuronidase, domain 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.08 E-value=3.8 Score=32.17 Aligned_cols=40 Identities=15% Similarity=0.143 Sum_probs=31.0
Q ss_pred HHHHHHHhhhhhhhhhhhcCCCccHHHHHHHHHhhcCCCC
Q 025596 14 ASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPC 53 (250)
Q Consensus 14 ~~ie~rf~flaAD~~t~lRG~~~sYReVLldVc~kLkV~~ 53 (250)
+.+++.|..+..=++|++|-+...+-+-+++.||++++-+
T Consensus 36 ~~~~~d~~~~k~~G~N~iR~~~~~~~~~~~~~cD~~Gilv 75 (304)
T d1bhga3 36 PLLVKDFNLLRWLGANAFRTSHYPYAEEVMQMCDRYGIVV 75 (304)
T ss_dssp HHHHHHHHHHHHHTCCEEECTTSCCSSTHHHHHSTTCCEE
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCChHHHHHHHHhcCCee
Confidence 3466677777665689999887677788999999998754
No 2
>d1jz8a5 c.1.8.3 (A:334-625) beta-Galactosidase, domain 3 {Escherichia coli [TaxId: 562]}
Probab=37.48 E-value=7.4 Score=30.76 Aligned_cols=39 Identities=5% Similarity=0.097 Sum_probs=31.9
Q ss_pred HHHHHHHhhhhhhhhhhhcCCCccHHHHHHHHHhhcCCC
Q 025596 14 ASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIP 52 (250)
Q Consensus 14 ~~ie~rf~flaAD~~t~lRG~~~sYReVLldVc~kLkV~ 52 (250)
+.++..|+.+-.=++|++|-+.....+-+++.||++++-
T Consensus 37 ~~~~~di~l~k~~G~N~iR~~~~p~~~~~~~~~D~~Gil 75 (292)
T d1jz8a5 37 QTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLY 75 (292)
T ss_dssp HHHHHHHHHHHHTTCCEEECTTSCCCHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCChHHHHHHHhhcCCe
Confidence 346777888887779999988667777899999999864
No 3
>d2je8a5 c.1.8.3 (A:331-678) Five-domain beta-mannosidase, domain 3 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=32.25 E-value=11 Score=29.46 Aligned_cols=36 Identities=11% Similarity=0.076 Sum_probs=24.7
Q ss_pred HHHHHHhhhhhhhhhhhcC---CCccHHHHHHHHHhhcCC
Q 025596 15 SLESRFLFLAADARSTLRG---WRPSYRNVLLAVRKNLNI 51 (250)
Q Consensus 15 ~ie~rf~flaAD~~t~lRG---~~~sYReVLldVc~kLkV 51 (250)
.++..|+.+-.=++|++|- +-|. .+.++|.||++||
T Consensus 46 ~~~~di~l~ke~G~N~IR~~~~~~~p-~~~f~d~cD~~Gi 84 (348)
T d2je8a5 46 RYQTLFRDMKEANMNMVRIWGGGTYE-NNLFYDLADENGI 84 (348)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTSCCC-CHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCEEecCCCCCCC-CHHHHHHHHHCCC
Confidence 3455566555555888883 3232 6888999999997
No 4
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=30.58 E-value=17 Score=23.04 Aligned_cols=14 Identities=21% Similarity=0.586 Sum_probs=11.0
Q ss_pred HHHHhHhHHHHHHH
Q 025596 198 NMVALLGPVLWGTF 211 (250)
Q Consensus 198 s~~~llGPilW~w~ 211 (250)
-..+|+||.+|+--
T Consensus 22 ~f~~~L~PaGwVLs 35 (43)
T d1v54m_ 22 TFLSFLLPAGWVLY 35 (43)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHH
Confidence 45689999999843
No 5
>d2gf5a2 a.77.1.4 (A:2-83) FADD (Mort1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.03 E-value=60 Score=21.76 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=14.9
Q ss_pred cHHHHHHHHHhhcCCCCCCCCChHHHHH
Q 025596 37 SYRNVLLAVRKNLNIPCSSKLSTEDLEA 64 (250)
Q Consensus 37 sYReVLldVc~kLkV~~s~~lsT~dLEa 64 (250)
+||..|.+|.+.| +.+|+|.
T Consensus 2 Pfr~lL~~Is~~L--------~~~dl~~ 21 (82)
T d2gf5a2 2 PFLVLLHSVSSSL--------SSSELTE 21 (82)
T ss_dssp HHHHHHHHHHTTS--------CHHHHHH
T ss_pred hHHHHHHHHHHhc--------CHHHHHH
Confidence 6999999998765 4566663
No 6
>d1yq2a5 c.1.8.3 (A:313-609) beta-Galactosidase, domain 3 {Arthrobacter sp. c2-2 [TaxId: 192168]}
Probab=25.94 E-value=14 Score=29.50 Aligned_cols=39 Identities=10% Similarity=0.056 Sum_probs=31.4
Q ss_pred HHHHHHHhhhhhhhhhhhcCCCccHHHHHHHHHhhcCCC
Q 025596 14 ASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIP 52 (250)
Q Consensus 14 ~~ie~rf~flaAD~~t~lRG~~~sYReVLldVc~kLkV~ 52 (250)
+.++..|+.+-.=++|++|-+....-+-++|.||++++-
T Consensus 36 ~~~~~di~l~k~~G~N~iR~~h~p~~~~~~d~cD~~Gil 74 (297)
T d1yq2a5 36 AGAREDLALMKRFNVNAIRTSHYPPHPRLLDLADEMGFW 74 (297)
T ss_dssp HHHHHHHHHHHHTTCCEEEETTSCCCHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHCCCCEEEccCCCChHHHHHHHHhcCCE
Confidence 356778888887779999977555667799999999985
No 7
>d1umna_ a.25.1.1 (A:) Dodecameric ferritin homolog {Streptococcus suis [TaxId: 1307]}
Probab=25.74 E-value=28 Score=25.26 Aligned_cols=30 Identities=23% Similarity=0.482 Sum_probs=24.1
Q ss_pred chhhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 025596 2 IEQDLEEREDFIASLESRFLFLAADARSTL 31 (250)
Q Consensus 2 ~~~~~~~r~~~~~~ie~rf~flaAD~~t~l 31 (250)
++...++-...+|.|.+|++.|++.....+
T Consensus 41 f~~~~~e~~~~~D~lAERi~~lGg~p~~~~ 70 (151)
T d1umna_ 41 MDEYMEEIDGYLDEMSERLITLGGAPFSTL 70 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcCH
Confidence 456677788999999999999999775444
No 8
>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=24.80 E-value=12 Score=26.18 Aligned_cols=19 Identities=11% Similarity=0.004 Sum_probs=16.0
Q ss_pred CccHHHHHHHHHhhcCCCC
Q 025596 35 RPSYRNVLLAVRKNLNIPC 53 (250)
Q Consensus 35 ~~sYReVLldVc~kLkV~~ 53 (250)
+-.-.|||.++|+|+|++-
T Consensus 20 ~t~l~~VL~eaC~k~~~~~ 38 (76)
T d2al3a1 20 STVLLQVLEDTCRRQDFNP 38 (76)
T ss_dssp TSBHHHHHHHHHHHTTCCG
T ss_pred CcCHHHHHHHHHHHhCCCh
Confidence 4567899999999999863
No 9
>d1d0qa_ g.41.3.2 (A:) Zinc-binding domain of DNA primase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=24.13 E-value=10 Score=26.96 Aligned_cols=32 Identities=9% Similarity=-0.000 Sum_probs=26.6
Q ss_pred hhhhhhhhcC-CCccHHHHHHHHHhhcCCCCCC
Q 025596 24 AADARSTLRG-WRPSYRNVLLAVRKNLNIPCSS 55 (250)
Q Consensus 24 aAD~~t~lRG-~~~sYReVLldVc~kLkV~~s~ 55 (250)
++|+.++++- .+.+|.|.+..++++.+||...
T Consensus 66 ~Gd~i~fv~~~~~~sf~eAv~~La~~~gi~l~~ 98 (102)
T d1d0qa_ 66 GGNAFTFLMDIEGIPFVEAAKRLAAKAGVDLSV 98 (102)
T ss_dssp EECHHHHHHHHHTCCHHHHHHHHHHHHTCCCGG
T ss_pred cccHHHHHHHHHCcCHHHHHHHHHHHhCCCCCC
Confidence 5677887764 5999999999999999998654
No 10
>d1o9ra_ a.25.1.1 (A:) Dodecameric ferritin homolog {Agrobacterium tumefaciens, Dps [TaxId: 358]}
Probab=23.96 E-value=33 Score=25.27 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=23.1
Q ss_pred chhhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 025596 2 IEQDLEEREDFIASLESRFLFLAADARSTL 31 (250)
Q Consensus 2 ~~~~~~~r~~~~~~ie~rf~flaAD~~t~l 31 (250)
++...++=..+.|.|..|++.||+.....+
T Consensus 55 ~~~~~~~~~~~~D~iAERi~~LG~~p~~~~ 84 (162)
T d1o9ra_ 55 LDTFRTQLDNHGDTIAERVVQLGGTALGSL 84 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcCH
Confidence 345566677899999999999999885433
No 11
>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.88 E-value=24 Score=24.92 Aligned_cols=21 Identities=24% Similarity=0.135 Sum_probs=19.1
Q ss_pred CCCccHHHHHHHHHhhcCCCC
Q 025596 33 GWRPSYRNVLLAVRKNLNIPC 53 (250)
Q Consensus 33 G~~~sYReVLldVc~kLkV~~ 53 (250)
.+|.+|.+++--|++||+.+-
T Consensus 21 ~~G~~y~~L~~lvs~KL~l~~ 41 (82)
T d1oeya_ 21 QPGLPYSQVRDMVSKKLELRL 41 (82)
T ss_dssp CTTCCHHHHHHHHHHHTTCCG
T ss_pred cCCCCHHHHHHHHHHHhCCCh
Confidence 579999999999999999874
No 12
>d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287]}
Probab=22.84 E-value=21 Score=25.65 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=23.6
Q ss_pred HHHHHhhcCCCCCC---CCChHH--HHHHHHHHHHhh
Q 025596 42 LLAVRKNLNIPCSS---KLSTED--LEAEIFLHLLQE 73 (250)
Q Consensus 42 LldVc~kLkV~~s~---~lsT~d--LEaeIfl~lL~~ 73 (250)
|-.+|++++|.++. +-...| .-++||.|++++
T Consensus 158 L~~~~~~~gi~~~~~~aH~Al~Da~~ta~i~~~l~~~ 194 (202)
T d2f96a1 158 LAKACQAAGMEFDNREAHSARYDTEKTAELFCGIVNR 194 (202)
T ss_dssp HHHHHHHTTCCCCTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 56689999998755 334444 457899999988
No 13
>d2fjca1 a.25.1.1 (A:27-177) Dodecameric ferritin homolog {Treponema pallidum, TpF1 [TaxId: 160]}
Probab=22.79 E-value=32 Score=24.86 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=24.5
Q ss_pred chhhhhhHHHHHHHHHHHHhhhhhhhhhhhc
Q 025596 2 IEQDLEEREDFIASLESRFLFLAADARSTLR 32 (250)
Q Consensus 2 ~~~~~~~r~~~~~~ie~rf~flaAD~~t~lR 32 (250)
++...++=...+|.|.+|++.|++....++.
T Consensus 46 f~~~y~~~~~~~D~iAERi~~Lgg~p~~t~~ 76 (151)
T d2fjca1 46 LEEYYVSVTEAFDTIAERLLQLGAQAPASMA 76 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCccCHH
Confidence 3455667788999999999999999865544
No 14
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=22.12 E-value=33 Score=23.40 Aligned_cols=32 Identities=19% Similarity=0.422 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhh
Q 025596 38 YRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQE 73 (250)
Q Consensus 38 YReVLldVc~kLkV~~s~~lsT~dLEaeIfl~lL~~ 73 (250)
|..-|..+|.++ ++ .. ..+|+=+|.|+++.++
T Consensus 31 y~~~l~~~~~~~-~~--~~-daeDl~Qe~~l~~~~~ 62 (113)
T d1or7a2 31 YQHKVASLVSRY-VP--SG-DVPDVVQEAFIKAYRA 62 (113)
T ss_dssp HHHHHHHHHTTT-SC--GG-GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cC--Cc-hHHHHHHHHHHHHHHh
Confidence 777888888776 33 33 4899999999999988
No 15
>d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]}
Probab=22.10 E-value=13 Score=26.35 Aligned_cols=46 Identities=28% Similarity=0.293 Sum_probs=31.8
Q ss_pred hhhhhhcCCCccHHHHHHHHHhhcCCCCCC---CCChHHHH--HHHHHHHH
Q 025596 26 DARSTLRGWRPSYRNVLLAVRKNLNIPCSS---KLSTEDLE--AEIFLHLL 71 (250)
Q Consensus 26 D~~t~lRG~~~sYReVLldVc~kLkV~~s~---~lsT~dLE--aeIfl~lL 71 (250)
|...+.|...|..+.=|..+|++++++.+. +-...|-+ +++|++|+
T Consensus 123 d~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~H~Al~Da~~ta~v~~~l~ 173 (174)
T d2guia1 123 DSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMT 173 (174)
T ss_dssp EHHHHHHHHSTTSCCSHHHHHHHTTCCCTTCSSCCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHcCCCCCCHHHHHHHcCCCCCCCCCcCHHHHHHHHHHHHHHHc
Confidence 555555554444555689999999998765 55677766 48888875
No 16
>d1yt3a2 a.60.8.3 (A:295-375) Ribonuclease D {Escherichia coli [TaxId: 562]}
Probab=20.73 E-value=21 Score=24.30 Aligned_cols=26 Identities=12% Similarity=0.219 Sum_probs=18.0
Q ss_pred HHHHHHHHhhcCCCCCCCCChHHHHH
Q 025596 39 RNVLLAVRKNLNIPCSSKLSTEDLEA 64 (250)
Q Consensus 39 ReVLldVc~kLkV~~s~~lsT~dLEa 64 (250)
++++..+|+.++|+-.==.|--|||+
T Consensus 17 k~~v~~~Ae~~~IapelLaskkdle~ 42 (81)
T d1yt3a2 17 KSLITDVSETHKISAELLASRRQINQ 42 (81)
T ss_dssp HHHHHHHHHHHTCCHHHHCCHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHhcCHHHHHH
Confidence 34567788888888555556667775
Done!