BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025599
(250 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5M759|VP221_ARATH Vacuolar protein sorting-associated protein 22 homolog 1
OS=Arabidopsis thaliana GN=VP22-1 PE=2 SV=2
Length = 250
Score = 452 bits (1163), Expect = e-127, Method: Compositional matrix adjust.
Identities = 209/250 (83%), Positives = 234/250 (93%)
Query: 1 MRRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKN 60
MRRRPGIGGLQ AA ARDQYRLLGENVAKLRTD+MKEQL+TFRSQLE+FARKHKNDIRKN
Sbjct: 1 MRRRPGIGGLQKAAAARDQYRLLGENVAKLRTDMMKEQLSTFRSQLEEFARKHKNDIRKN 60
Query: 61 PTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINL 120
P FR+QFHEMCA +GVDPLASNKGFWAELLGIGDFYYELGVQI+E+C+ TR HNGGLI+L
Sbjct: 61 PAFRAQFHEMCANIGVDPLASNKGFWAELLGIGDFYYELGVQIIEVCMLTRSHNGGLISL 120
Query: 121 QELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHN 180
QELCN LRQRRK +REAV+EDDCLRAISKLKVLG+G+EVI++GKKKLVRSVPTELNKDHN
Sbjct: 121 QELCNHLRQRRKKDREAVTEDDCLRAISKLKVLGSGFEVITIGKKKLVRSVPTELNKDHN 180
Query: 181 QILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWFPCAS 240
QILELAQ QGFV V+EV+RRLSWTSGR IDAL+ LLEEGLAM+D+GH+D K RYWFPC S
Sbjct: 181 QILELAQGQGFVIVEEVQRRLSWTSGRVIDALETLLEEGLAMIDNGHKDGKCRYWFPCVS 240
Query: 241 SISSSMGADS 250
S+ SS+G+D+
Sbjct: 241 SVYSSIGSDT 250
>sp|Q5RJU0|SNF8_XENTR Vacuolar-sorting protein SNF8 OS=Xenopus tropicalis GN=snf8 PE=2
SV=1
Length = 257
Score = 253 bits (645), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 122/237 (51%), Positives = 164/237 (69%), Gaps = 1/237 (0%)
Query: 2 RRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNP 61
RR G G + +A +Y+ G +A+ + M +QL F++ LE+FA KHK +IRKNP
Sbjct: 3 RRGVGAGAIAKKKLAEAKYKERGTVLAEDQLLQMSKQLEMFKTNLEEFASKHKQEIRKNP 62
Query: 62 TFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQ 121
FR QF +MCA +GVDPLAS KGFW+E+LG+GDFYYELGVQI+E+CLA + HNGGLI L
Sbjct: 63 QFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHHNGGLITLA 122
Query: 122 ELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQ 181
EL + + R + VS+DD +RAI KLKVLGNG+ +I VG LV+SVP ELN DH
Sbjct: 123 ELHQHVLKGRGKLAQDVSQDDIIRAIKKLKVLGNGFGIIPVGGSYLVQSVPAELNMDHTV 182
Query: 182 ILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWFPC 238
+L+LA+ +GFVTV+E++ L+W + RA L+ LL+EGLA +D + +YW P
Sbjct: 183 VLQLAEKKGFVTVNEIKSSLNWETERAKHVLEHLLKEGLAWIDS-QAQGEAQYWLPA 238
>sp|Q5U3V9|SNF8_DANRE Vacuolar-sorting protein SNF8 OS=Danio rerio GN=snf8 PE=2 SV=2
Length = 258
Score = 242 bits (618), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 120/240 (50%), Positives = 160/240 (66%), Gaps = 1/240 (0%)
Query: 2 RRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNP 61
RR G G + +A +Y+ G +A+ + M +QL TF++ LE+FA KHK +IRK+
Sbjct: 3 RRGVGAGAIAKKKLAEAKYKERGSVLAEDQIAQMSKQLDTFKTHLEEFASKHKQEIRKSS 62
Query: 62 TFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQ 121
FR QF EMCA +GVDPLAS KGFW+E+LG+GDFYYELGVQI+E+CLA + NGGLI L
Sbjct: 63 QFRVQFQEMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLD 122
Query: 122 ELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQ 181
EL + + + R + VS+DD +RAI KLK +GNG+ +I VG LV+SVP ELN DH
Sbjct: 123 ELHHRVLKGRGKFAQDVSQDDLVRAIKKLKAMGNGFGMIPVGGTYLVQSVPAELNMDHTV 182
Query: 182 ILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWFPCASS 241
+L+LA+ +G+VTV E+ L W RA LD LL+EGLA +D + +YW P S
Sbjct: 183 VLQLAEKKGYVTVSEIRESLKWEKERACHVLDHLLKEGLAWLDS-QAAGEPQYWLPALFS 241
>sp|Q96H20|SNF8_HUMAN Vacuolar-sorting protein SNF8 OS=Homo sapiens GN=SNF8 PE=1 SV=1
Length = 258
Score = 240 bits (612), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 117/237 (49%), Positives = 158/237 (66%), Gaps = 1/237 (0%)
Query: 2 RRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNP 61
RR G G + +A +Y+ G +A+ + M +QL F++ LE+FA KHK +IRKNP
Sbjct: 3 RRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNP 62
Query: 62 TFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQ 121
FR QF +MCA +GVDPLAS KGFW+E+LG+GDFYYELGVQI+E+CLA + NGGLI L+
Sbjct: 63 EFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLE 122
Query: 122 ELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQ 181
EL + + R + VS+DD +RAI KLK LG G+ +I VG L++SVP ELN DH
Sbjct: 123 ELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTV 182
Query: 182 ILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWFPC 238
+L+LA+ G+VTV E++ L W + RA L+ LL+EGLA +D + YW P
Sbjct: 183 VLQLAEKNGYVTVSEIKASLKWETERARQVLEHLLKEGLAWLDL-QAPGEAHYWLPA 238
>sp|Q9CZ28|SNF8_MOUSE Vacuolar-sorting protein SNF8 OS=Mus musculus GN=Snf8 PE=2 SV=1
Length = 258
Score = 240 bits (612), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 117/237 (49%), Positives = 158/237 (66%), Gaps = 1/237 (0%)
Query: 2 RRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNP 61
RR G G + +A +Y+ G +A+ + M +QL F++ LE+FA KHK +IRKNP
Sbjct: 3 RRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNP 62
Query: 62 TFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQ 121
FR QF +MCA +GVDPLAS KGFW+E+LG+GDFYYELGVQI+E+CLA + NGGLI L+
Sbjct: 63 EFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLE 122
Query: 122 ELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQ 181
EL + + R + VS+DD +RAI KLK LG G+ +I VG L++SVP ELN DH
Sbjct: 123 ELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTV 182
Query: 182 ILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWFPC 238
+L+LA+ G+VTV E++ L W + RA L+ LL+EGLA +D + YW P
Sbjct: 183 VLQLAEKNGYVTVSEIKTSLKWETERARQVLEHLLKEGLAWLDL-QAPGEAHYWLPA 238
>sp|Q5RK19|SNF8_RAT Vacuolar-sorting protein SNF8 OS=Rattus norvegicus GN=Snf8 PE=1
SV=1
Length = 258
Score = 240 bits (612), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 117/237 (49%), Positives = 158/237 (66%), Gaps = 1/237 (0%)
Query: 2 RRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNP 61
RR G G + +A +Y+ G +A+ + M +QL F++ LE+FA KHK +IRKNP
Sbjct: 3 RRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNP 62
Query: 62 TFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQ 121
FR QF +MCA +GVDPLAS KGFW+E+LG+GDFYYELGVQI+E+CLA + NGGLI L+
Sbjct: 63 EFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLE 122
Query: 122 ELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQ 181
EL + + R + VS+DD +RAI KLK LG G+ +I VG L++SVP ELN DH
Sbjct: 123 ELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTV 182
Query: 182 ILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWFPC 238
+L+LA+ G+VTV E++ L W + RA L+ LL+EGLA +D + YW P
Sbjct: 183 VLQLAEKNGYVTVSEIKASLKWETERARQVLEHLLKEGLAWLDL-QAPGEAHYWLPA 238
>sp|Q54RC4|SNF8_DICDI Vacuolar-sorting protein SNF8 OS=Dictyostelium discoideum GN=snf8
PE=3 SV=1
Length = 246
Score = 214 bits (545), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 114/239 (47%), Positives = 149/239 (62%), Gaps = 4/239 (1%)
Query: 1 MRRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKN 60
MRR GI Q + Q + + E + + +KEQL F+ LE FA KHK DI KN
Sbjct: 1 MRRGIGIQAAQKQTQTQKQLQNVSEQLNTENINKIKEQLLVFKENLEIFATKHKKDIIKN 60
Query: 61 PTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINL 120
P FR F +MC +GVDPLASNKGFW ++LG+GDFYY LGVQI+EICL R NGGL+ +
Sbjct: 61 PEFRKYFQDMCNMIGVDPLASNKGFWCQVLGVGDFYYTLGVQIIEICLKYRSSNGGLMEM 120
Query: 121 QELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISV-GKKKLVRSVPTELNKDH 179
L LR+ R N + +S DD +ISKLKVLGNG+ +I V G KKLV+SVP ELNKDH
Sbjct: 121 DTLAEHLRKLRGKNSQEISCDDIECSISKLKVLGNGFNIIKVSGGKKLVQSVPCELNKDH 180
Query: 180 NQILELAQ-AQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWFP 237
I+ LAQ +T V +L W+ R + ++ LL+E + +D+ + + YWFP
Sbjct: 181 TDIIILAQDNNASITQSLVISKLKWSEERINNVINFLLQESMIWIDE--QSNETIYWFP 237
>sp|Q9LIJ4|VP222_ARATH Putative vacuolar protein sorting-associated protein 22 homolog 2
OS=Arabidopsis thaliana GN=VP22-2 PE=5 SV=1
Length = 120
Score = 211 bits (537), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 96/117 (82%), Positives = 110/117 (94%)
Query: 70 MCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQ 129
MCA +GVDPLASNKGFWAELLGIGDFYYE+GVQI+E+C+ TR HNGGLI+LQELCN LRQ
Sbjct: 1 MCANIGVDPLASNKGFWAELLGIGDFYYEIGVQIIEVCMLTRSHNGGLISLQELCNHLRQ 60
Query: 130 RRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELA 186
RRK++REAV+EDDCLRAISKLK+LG+ +EVI++GKKK VRSVPTELNKDHN ILELA
Sbjct: 61 RRKTDREAVTEDDCLRAISKLKLLGSRFEVITIGKKKFVRSVPTELNKDHNHILELA 117
>sp|O94663|SNF8_SCHPO Vacuolar-sorting protein dot2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=dot2 PE=3 SV=1
Length = 252
Score = 157 bits (396), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 140/238 (58%), Gaps = 7/238 (2%)
Query: 1 MRRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKN 60
MR+R GIG L + QY +G + + ++D + QL+TF+ L+ FAR+H +I++N
Sbjct: 1 MRKRIGIGALNDDEYLK-QYEEVGNELIEQQSDEIASQLSTFQEALKTFAREHATEIKQN 59
Query: 61 PTFRSQFHEMCAKVGVDPLAS--NKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLI 118
FR+ F ++ K+G+DP S ++ WA + G+ +FYY++ V+++E+C AT+ NGGL+
Sbjct: 60 SQFRNTFVKLALKIGLDPFVSGSDESAWAAV-GMNEFYYQVAVRVIEVCYATQMENGGLL 118
Query: 119 NLQELCNLLRQRRKS-NREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNK 177
++ ++C L + ++ E + E D +RA+ L LG G+ + + K+ +RS+P ELN
Sbjct: 119 SVSQVCRFLNEENEAFGHEWLRETDVVRAVDSLAPLGPGFVLEKIAGKQYIRSLPLELNT 178
Query: 178 DHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYW 235
D N +LE + G+VT+ + +W R I L+ L+ + L +D + + YW
Sbjct: 179 DQNVVLEAVEILGYVTISILRDNYAWERSRCIQVLNDLVSKSLLWIDS--QGVEMAYW 234
>sp|Q12483|SNF8_YEAST Vacuolar-sorting protein SNF8 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SNF8 PE=1 SV=1
Length = 233
Score = 130 bits (327), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 120/206 (58%), Gaps = 14/206 (6%)
Query: 35 MKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLA---SNKGFWAELLG 91
+++QL F+ +L +FA+KH ++++ +P FRS+F MC+ +G+DPL+ +K L
Sbjct: 32 LRDQLMVFQERLVEFAKKHNSELQASPEFRSKFMHMCSSIGIDPLSLFDRDK----HLFT 87
Query: 92 IGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLK 151
+ DFYYE+ ++++EIC T+ NGG+I+ QEL + RK N V DD ++I LK
Sbjct: 88 VNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKV--HFRKLN---VGLDDLEKSIDMLK 142
Query: 152 VLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDA 211
L +E+ + KK +RSVP EL D +ILE+ G+ ++ ++ L W + R+ A
Sbjct: 143 SL-ECFEIFQIRGKKFLRSVPNELTSDQTKILEICSILGYSSISLLKANLGWEAVRSKSA 201
Query: 212 LDILLEEGLAMVDDGHRDRKRRYWFP 237
LD ++ GL + D + YW P
Sbjct: 202 LDEMVANGLLWI-DYQGGAEALYWDP 226
>sp|Q9FLP0|MA651_ARATH 65-kDa microtubule-associated protein 1 OS=Arabidopsis thaliana
GN=MAP65-1 PE=1 SV=1
Length = 587
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 33/50 (66%)
Query: 32 TDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLAS 81
+DL ++L F+SQL++ ++ + +RK F S H++CA +G+D L++
Sbjct: 153 SDLSLKKLDDFQSQLQELQKEKSDRLRKVLEFVSTVHDLCAVLGLDFLST 202
>sp|Q0TPD5|EX7L_CLOP1 Exodeoxyribonuclease 7 large subunit OS=Clostridium perfringens
(strain ATCC 13124 / NCTC 8237 / Type A) GN=xseA PE=3
SV=1
Length = 400
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 120 LQELCNLLRQRR--KSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNK 177
L+E N L +R+ K+ E ++ + L+ ++ L LG GY VI K K++ V +EL K
Sbjct: 320 LEEKLNFLGKRKIDKAKDELIALNSILQTLNPLNTLGRGYSVIMDKKDKVINEV-SELKK 378
Query: 178 DHNQILELAQAQGFVTVD 195
N ++++ G V +D
Sbjct: 379 --NDMVKVIMKDGSVNID 394
>sp|Q54BW4|CPAS2_DICDI Circularly permutated Ras protein 2 OS=Dictyostelium discoideum
GN=cpras2 PE=3 SV=1
Length = 3933
Score = 35.0 bits (79), Expect = 0.52, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 19/121 (15%)
Query: 85 FWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCL 144
W + G G YY + ++ + L+T H GL + RQ ++ E D
Sbjct: 3766 LWLQKEGKGKLYYRMNIKYATVDLSTEEHFNGL-------TIHRQYSPKSKSDKMEFDSE 3818
Query: 145 RAISKLKVLGNGYEVISVGKKKLVR-SVPTELNKDHNQILELAQAQGFVTVDEVERRLSW 203
+ K +SVG K LV +V TE+++ +N L A GF VD+ + RL
Sbjct: 3819 TGVLK----------VSVGSKVLVTLNVQTEVDR-YNLALVDKFAGGFDIVDKTDFRLEG 3867
Query: 204 T 204
T
Sbjct: 3868 T 3868
>sp|Q0SS02|EX7L_CLOPS Exodeoxyribonuclease 7 large subunit OS=Clostridium perfringens
(strain SM101 / Type A) GN=xseA PE=3 SV=1
Length = 400
Score = 34.3 bits (77), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 120 LQELCNLLRQRR--KSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNK 177
L+E N L +R+ K+ E ++ + L+ ++ L LG GY VI + K++ +V +EL K
Sbjct: 320 LEEKLNFLGKRKIDKAKDELIALNSILQTLNPLNTLGRGYSVIMDKEDKVINNV-SELKK 378
Query: 178 DHNQILELAQAQGFVTVD 195
N ++++ G V +D
Sbjct: 379 --NDMVKVIMKDGSVNID 394
>sp|Q8XJD8|EX7L_CLOPE Exodeoxyribonuclease 7 large subunit OS=Clostridium perfringens
(strain 13 / Type A) GN=xseA PE=3 SV=1
Length = 400
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 120 LQELCNLLRQRR--KSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNK 177
L+E N L +R+ K+ E ++ + L+ ++ L LG GY VI + K++ V +EL K
Sbjct: 320 LEEKLNFLGKRKIDKAKDELIALNSILQTLNPLNTLGRGYSVIMDKEDKVINKV-SELKK 378
Query: 178 DHNQILELAQAQGFVTVD 195
N ++++ G V +D
Sbjct: 379 --NDMVKVIMKDGSVNID 394
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 80 ASNKGFWAELLGIGDFY--YELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREA 137
A+ W +LG + Y+LGV+I + +A P N G + L N+ K++ +
Sbjct: 378 ATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPG--HHVMLSNIYALSGKTDEVS 435
Query: 138 VSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQI 182
D +R + +V GY VI V K + S+ E +++ +I
Sbjct: 436 HIRDGMMRNNLRKQV---GYSVIEVENKTYMFSMGDESHQETGEI 477
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,318,305
Number of Sequences: 539616
Number of extensions: 3632119
Number of successful extensions: 10524
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 10504
Number of HSP's gapped (non-prelim): 22
length of query: 250
length of database: 191,569,459
effective HSP length: 115
effective length of query: 135
effective length of database: 129,513,619
effective search space: 17484338565
effective search space used: 17484338565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)