Query 025599
Match_columns 250
No_of_seqs 109 out of 228
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 13:36:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025599.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025599hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u5t_A Appears to BE functiona 100.0 1.4E-89 4.6E-94 608.1 19.3 231 2-243 1-232 (233)
2 3cuq_A Vacuolar-sorting protei 100.0 2E-88 6.8E-93 600.7 18.7 221 24-245 1-221 (234)
3 3cuq_B Vacuolar protein-sortin 100.0 3.2E-57 1.1E-61 398.2 18.4 200 31-242 9-216 (218)
4 1w7p_D VPS36P, YLR417W; ESCRT- 100.0 3.3E-44 1.1E-48 350.9 14.3 221 3-243 321-564 (566)
5 1u5t_B Defective in vacuolar p 100.0 1.4E-39 4.6E-44 276.1 13.9 143 93-242 10-168 (169)
6 2heo_A Z-DNA binding protein 1 96.1 0.012 4.2E-07 41.4 5.7 60 172-237 5-65 (67)
7 1qgp_A Protein (double strande 95.9 0.02 6.8E-07 41.6 6.2 59 174-236 10-72 (77)
8 2htj_A P fimbrial regulatory p 95.8 0.036 1.2E-06 39.7 7.4 58 180-238 3-60 (81)
9 2jt1_A PEFI protein; solution 95.7 0.03 1E-06 40.9 6.8 57 179-236 6-68 (77)
10 1xmk_A Double-stranded RNA-spe 95.7 0.018 6.3E-07 42.4 5.6 53 172-224 6-59 (79)
11 1xn7_A Hypothetical protein YH 95.6 0.025 8.6E-07 41.4 5.8 44 181-224 6-49 (78)
12 3i71_A Ethanolamine utilizatio 95.5 0.024 8.2E-07 39.8 5.1 42 182-223 8-50 (68)
13 1qbj_A Protein (double-strande 95.3 0.053 1.8E-06 39.9 6.8 54 179-236 12-68 (81)
14 2k02_A Ferrous iron transport 95.3 0.03 1E-06 42.0 5.4 44 181-224 6-49 (87)
15 2z99_A Putative uncharacterize 95.2 0.29 9.8E-06 42.6 12.3 110 101-225 17-145 (219)
16 1t6s_A Conserved hypothetical 95.2 0.077 2.6E-06 44.1 8.3 110 102-224 10-138 (162)
17 1p6r_A Penicillinase repressor 94.9 0.061 2.1E-06 38.4 6.1 63 174-239 6-72 (82)
18 3bdd_A Regulatory protein MARR 94.7 0.11 3.8E-06 39.5 7.5 54 174-227 28-81 (142)
19 3tgn_A ADC operon repressor AD 94.4 0.083 2.9E-06 40.6 6.2 53 172-225 33-85 (146)
20 1jgs_A Multiple antibiotic res 94.3 0.16 5.5E-06 38.6 7.8 54 174-227 31-84 (138)
21 3g3z_A NMB1585, transcriptiona 94.3 0.13 4.5E-06 39.6 7.3 55 172-226 26-80 (145)
22 2fbh_A Transcriptional regulat 94.3 0.15 5.1E-06 39.0 7.5 54 174-227 34-88 (146)
23 3bja_A Transcriptional regulat 94.2 0.13 4.6E-06 38.9 6.9 53 174-226 30-82 (139)
24 3bpv_A Transcriptional regulat 94.2 0.092 3.1E-06 39.9 6.0 54 174-227 26-79 (138)
25 2rdp_A Putative transcriptiona 94.2 0.16 5.4E-06 39.2 7.4 54 174-227 39-92 (150)
26 3eco_A MEPR; mutlidrug efflux 94.1 0.16 5.3E-06 38.8 7.2 55 173-227 27-83 (139)
27 3oop_A LIN2960 protein; protei 94.1 0.15 5.2E-06 39.2 7.1 55 173-227 33-87 (143)
28 2gxg_A 146AA long hypothetical 94.1 0.23 7.7E-06 38.0 8.1 53 174-227 34-86 (146)
29 1lj9_A Transcriptional regulat 94.0 0.18 6.1E-06 38.6 7.4 54 174-227 26-79 (144)
30 3nrv_A Putative transcriptiona 93.9 0.12 4.2E-06 39.8 6.3 56 172-227 35-90 (148)
31 1s3j_A YUSO protein; structura 93.7 0.14 4.7E-06 39.8 6.3 54 174-227 34-87 (155)
32 2k4b_A Transcriptional regulat 93.7 0.086 2.9E-06 40.0 4.9 63 173-238 31-97 (99)
33 1oyi_A Double-stranded RNA-bin 93.7 0.15 5E-06 37.9 6.0 53 179-236 19-71 (82)
34 2hr3_A Probable transcriptiona 93.7 0.21 7.3E-06 38.3 7.3 56 172-227 30-86 (147)
35 3bj6_A Transcriptional regulat 93.6 0.22 7.4E-06 38.5 7.3 54 174-227 37-90 (152)
36 2pjp_A Selenocysteine-specific 93.6 0.37 1.3E-05 37.2 8.6 107 98-225 7-114 (121)
37 3cjn_A Transcriptional regulat 93.6 0.23 7.8E-06 39.0 7.5 54 174-227 49-102 (162)
38 2pex_A Transcriptional regulat 93.5 0.23 7.9E-06 38.5 7.3 53 174-226 44-96 (153)
39 2nnn_A Probable transcriptiona 93.5 0.16 5.4E-06 38.5 6.2 53 174-226 35-87 (140)
40 2cg4_A Regulatory protein ASNC 93.4 0.15 5.3E-06 40.3 6.2 50 174-223 5-54 (152)
41 1sfx_A Conserved hypothetical 93.3 0.2 6.9E-06 36.2 6.3 52 175-226 18-69 (109)
42 1z91_A Organic hydroperoxide r 93.3 0.24 8.3E-06 38.0 7.0 54 174-227 37-90 (147)
43 2ia0_A Putative HTH-type trans 93.3 0.14 5E-06 41.9 6.0 50 172-221 12-61 (171)
44 1tbx_A ORF F-93, hypothetical 93.3 0.17 5.9E-06 36.9 5.9 55 172-226 3-61 (99)
45 3bro_A Transcriptional regulat 93.2 0.41 1.4E-05 36.3 8.1 53 174-226 31-85 (141)
46 2dbb_A Putative HTH-type trans 93.2 0.19 6.6E-06 39.6 6.4 48 175-222 7-54 (151)
47 1r1u_A CZRA, repressor protein 93.1 0.44 1.5E-05 35.5 8.0 78 136-238 6-83 (106)
48 3cuo_A Uncharacterized HTH-typ 93.1 0.3 1E-05 35.1 6.9 55 179-236 26-80 (99)
49 3ech_A MEXR, multidrug resista 93.0 0.15 5.3E-06 39.1 5.5 54 174-227 34-87 (142)
50 3k0l_A Repressor protein; heli 93.0 0.37 1.3E-05 38.0 7.8 54 174-227 43-96 (162)
51 2kko_A Possible transcriptiona 93.0 0.26 8.9E-06 37.1 6.6 77 136-237 5-81 (108)
52 3cdh_A Transcriptional regulat 92.9 0.22 7.4E-06 38.8 6.3 52 174-225 40-91 (155)
53 2bv6_A MGRA, HTH-type transcri 92.9 0.3 1E-05 37.3 7.0 54 174-227 34-87 (142)
54 2fu4_A Ferric uptake regulatio 92.8 0.28 9.7E-06 34.8 6.3 53 175-227 15-74 (83)
55 2nyx_A Probable transcriptiona 92.8 0.35 1.2E-05 38.5 7.5 54 174-227 42-95 (168)
56 2p5v_A Transcriptional regulat 92.7 0.22 7.7E-06 39.9 6.3 50 174-223 7-56 (162)
57 2qww_A Transcriptional regulat 92.7 0.37 1.3E-05 37.3 7.4 49 175-223 39-87 (154)
58 2cfx_A HTH-type transcriptiona 92.7 0.22 7.5E-06 39.2 6.0 49 175-223 3-51 (144)
59 3s2w_A Transcriptional regulat 92.7 0.26 9E-06 38.6 6.5 54 174-227 47-100 (159)
60 2fa5_A Transcriptional regulat 92.6 0.26 8.8E-06 38.6 6.4 51 175-225 47-97 (162)
61 3jth_A Transcription activator 92.6 0.33 1.1E-05 35.4 6.5 55 179-237 25-79 (98)
62 2cyy_A Putative HTH-type trans 92.5 0.23 8E-06 39.3 6.1 50 174-223 4-53 (151)
63 3hsr_A HTH-type transcriptiona 92.5 0.2 6.7E-06 38.6 5.5 54 174-227 33-86 (140)
64 3r0a_A Putative transcriptiona 92.5 0.33 1.1E-05 37.5 6.8 52 174-225 23-76 (123)
65 1ku9_A Hypothetical protein MJ 92.4 0.46 1.6E-05 36.1 7.5 61 175-236 24-85 (152)
66 2fbi_A Probable transcriptiona 92.4 0.26 8.8E-06 37.4 5.9 53 174-226 33-85 (142)
67 2lkp_A Transcriptional regulat 92.3 0.65 2.2E-05 34.9 8.1 82 132-238 8-89 (119)
68 4hbl_A Transcriptional regulat 92.2 0.26 9E-06 38.3 5.9 54 174-227 38-91 (149)
69 1i1g_A Transcriptional regulat 92.1 0.24 8.1E-06 38.4 5.6 48 175-222 2-49 (141)
70 2a61_A Transcriptional regulat 92.1 0.27 9.3E-06 37.5 5.8 53 174-226 30-82 (145)
71 2w25_A Probable transcriptiona 91.9 0.3 1E-05 38.5 6.0 49 174-222 4-52 (150)
72 1sd4_A Penicillinase repressor 91.9 0.39 1.3E-05 36.3 6.4 62 173-237 6-71 (126)
73 3e6m_A MARR family transcripti 91.8 0.43 1.5E-05 37.5 6.9 54 174-227 50-103 (161)
74 2frh_A SARA, staphylococcal ac 91.8 0.51 1.8E-05 36.1 7.1 55 172-226 32-88 (127)
75 3deu_A Transcriptional regulat 91.7 0.44 1.5E-05 38.0 6.9 54 174-227 50-104 (166)
76 2dk5_A DNA-directed RNA polyme 91.7 0.35 1.2E-05 36.1 5.8 51 172-222 15-67 (91)
77 1r1t_A Transcriptional repress 91.7 0.84 2.9E-05 35.2 8.2 77 137-238 27-103 (122)
78 2g9w_A Conserved hypothetical 91.7 0.54 1.8E-05 36.7 7.2 62 174-238 6-72 (138)
79 3i4p_A Transcriptional regulat 91.6 0.29 9.8E-06 39.5 5.6 46 178-223 4-49 (162)
80 2eth_A Transcriptional regulat 91.3 0.78 2.7E-05 35.6 7.8 53 174-226 41-93 (154)
81 3boq_A Transcriptional regulat 91.1 0.34 1.2E-05 37.8 5.5 54 174-227 44-98 (160)
82 3kp7_A Transcriptional regulat 91.1 0.28 9.4E-06 38.1 4.9 49 174-223 35-83 (151)
83 2e1c_A Putative HTH-type trans 91.0 0.4 1.4E-05 39.2 6.0 50 174-223 24-73 (171)
84 1okr_A MECI, methicillin resis 90.9 0.25 8.5E-06 37.2 4.4 53 174-226 7-63 (123)
85 2pn6_A ST1022, 150AA long hypo 90.9 0.38 1.3E-05 37.8 5.6 47 177-223 3-49 (150)
86 1q1h_A TFE, transcription fact 90.4 0.75 2.6E-05 34.2 6.7 45 180-224 21-66 (110)
87 1u2w_A CADC repressor, cadmium 90.4 0.73 2.5E-05 35.3 6.7 57 179-238 44-100 (122)
88 1lva_A Selenocysteine-specific 90.4 3.8 0.00013 35.5 12.1 113 92-225 135-250 (258)
89 3nqo_A MARR-family transcripti 90.4 0.78 2.7E-05 37.4 7.3 53 175-227 39-93 (189)
90 3jw4_A Transcriptional regulat 90.3 0.26 8.8E-06 38.1 4.1 52 174-225 38-91 (148)
91 3f3x_A Transcriptional regulat 90.3 0.52 1.8E-05 36.1 5.8 53 174-227 34-86 (144)
92 3b73_A PHIH1 repressor-like pr 90.2 0.44 1.5E-05 36.9 5.3 49 175-223 11-61 (111)
93 1ub9_A Hypothetical protein PH 90.2 0.84 2.9E-05 32.7 6.5 46 179-224 18-63 (100)
94 2d1h_A ST1889, 109AA long hypo 90.0 0.41 1.4E-05 34.6 4.7 54 173-226 17-71 (109)
95 2oqg_A Possible transcriptiona 89.9 0.84 2.9E-05 33.7 6.5 47 179-226 23-69 (114)
96 2xvc_A ESCRT-III, SSO0910; cel 89.8 0.66 2.3E-05 32.2 5.2 43 181-223 14-57 (59)
97 3k2z_A LEXA repressor; winged 89.5 0.52 1.8E-05 39.1 5.5 52 174-225 2-58 (196)
98 2lmt_A Calmodulin-related prot 89.4 2.8 9.5E-05 32.0 9.5 93 37-157 7-99 (148)
99 3u2r_A Regulatory protein MARR 89.4 0.47 1.6E-05 37.6 5.0 56 172-227 41-98 (168)
100 1sfu_A 34L protein; protein/Z- 89.3 1.6 5.5E-05 31.7 7.3 50 178-227 13-65 (75)
101 2ovk_B RLC, myosin regulatory 89.2 0.46 1.6E-05 36.2 4.7 109 38-156 14-135 (153)
102 3pqk_A Biofilm growth-associat 89.1 1.5 5E-05 32.1 7.2 54 180-237 26-79 (102)
103 2fxa_A Protease production reg 88.8 0.9 3.1E-05 37.9 6.6 54 174-227 45-98 (207)
104 2wte_A CSA3; antiviral protein 88.2 0.69 2.4E-05 40.3 5.7 53 172-224 147-199 (244)
105 3i5g_C Myosin catalytic light 88.1 4.7 0.00016 31.7 10.2 94 37-157 6-101 (159)
106 2vxz_A Pyrsv_GP04; viral prote 87.9 0.83 2.8E-05 37.7 5.5 54 180-237 14-67 (165)
107 3lmm_A Uncharacterized protein 87.4 0.47 1.6E-05 46.5 4.5 109 117-238 444-574 (583)
108 2lnb_A Z-DNA-binding protein 1 87.4 1.6 5.6E-05 32.1 6.2 61 172-238 14-75 (80)
109 3fm5_A Transcriptional regulat 87.3 0.84 2.9E-05 35.2 5.1 53 174-226 36-89 (150)
110 1on2_A Transcriptional regulat 86.4 0.98 3.4E-05 34.8 5.0 43 182-224 13-55 (142)
111 3fwb_A Cell division control p 86.3 5.5 0.00019 29.9 9.3 36 39-79 22-57 (161)
112 2x4h_A Hypothetical protein SS 85.9 1.3 4.5E-05 33.8 5.5 52 174-225 10-65 (139)
113 1bja_A Transcription regulator 85.7 1.9 6.3E-05 32.7 6.1 51 172-222 11-62 (95)
114 2pg4_A Uncharacterized protein 85.6 1.4 4.9E-05 31.8 5.3 46 182-227 20-67 (95)
115 1y0u_A Arsenical resistance op 85.6 1.4 4.7E-05 32.0 5.2 45 179-225 33-77 (96)
116 2v79_A DNA replication protein 85.3 1.2 4.2E-05 35.3 5.2 51 174-224 29-84 (135)
117 4b8x_A SCO5413, possible MARR- 84.8 1.9 6.6E-05 33.6 6.1 54 174-227 32-87 (147)
118 3i5g_B Myosin regulatory light 84.7 2.2 7.6E-05 33.4 6.5 105 37-150 13-130 (153)
119 4aik_A Transcriptional regulat 84.7 3.4 0.00012 32.4 7.6 54 174-227 28-82 (151)
120 2yu3_A DNA-directed RNA polyme 84.7 1.2 4.1E-05 33.7 4.6 50 173-222 33-84 (95)
121 3u5c_Z RP45, S31, YS23, 40S ri 84.4 0.64 2.2E-05 36.2 3.0 36 189-224 57-92 (108)
122 2mys_C Myosin; muscle protein, 84.2 3 0.0001 30.8 6.8 37 38-79 6-42 (149)
123 3ox6_A Calcium-binding protein 84.1 11 0.00036 27.8 10.5 37 38-79 9-45 (153)
124 2fbk_A Transcriptional regulat 83.8 1.1 3.6E-05 36.1 4.3 52 174-225 66-120 (181)
125 3f6o_A Probable transcriptiona 83.8 2.8 9.6E-05 31.6 6.5 55 179-237 20-74 (118)
126 2qvo_A Uncharacterized protein 83.7 1.9 6.6E-05 31.2 5.3 52 175-227 10-65 (95)
127 3hrs_A Metalloregulator SCAR; 83.7 0.96 3.3E-05 38.2 4.1 44 182-225 11-54 (214)
128 2xzm_8 RPS25E,; ribosome, tran 83.2 0.82 2.8E-05 37.2 3.3 33 190-222 62-94 (143)
129 2jsc_A Transcriptional regulat 83.1 1.9 6.6E-05 32.7 5.3 56 179-238 23-78 (118)
130 2qac_A Myosin A tail domain in 82.7 4.4 0.00015 30.2 7.2 37 38-79 12-49 (146)
131 1stz_A Heat-inducible transcri 82.4 2.3 7.8E-05 38.7 6.3 50 175-224 15-71 (338)
132 1exr_A Calmodulin; high resolu 82.3 11 0.00036 28.2 9.3 37 38-79 8-44 (148)
133 2h09_A Transcriptional regulat 81.6 2 6.8E-05 33.5 5.0 41 184-224 47-87 (155)
134 3qrx_A Centrin; calcium-bindin 81.5 12 0.00041 28.3 9.5 36 38-78 26-61 (169)
135 2vn2_A DNAD, chromosome replic 81.4 3.4 0.00012 32.0 6.3 52 174-225 29-85 (128)
136 3f6v_A Possible transcriptiona 81.3 3 0.0001 33.4 6.0 76 137-237 39-114 (151)
137 1z7u_A Hypothetical protein EF 81.3 5.1 0.00018 29.9 7.1 46 181-227 26-72 (112)
138 4fx0_A Probable transcriptiona 80.6 2.6 8.8E-05 33.0 5.3 48 174-221 30-82 (148)
139 2hzt_A Putative HTH-type trans 80.6 4.9 0.00017 29.7 6.7 44 182-226 19-63 (107)
140 2obh_A Centrin-2; DNA repair c 80.0 10 0.00034 28.4 8.4 38 37-79 3-40 (143)
141 2c9l_Y EB1, zebra, BZLF1 trans 79.9 0.52 1.8E-05 32.4 0.8 41 33-80 18-58 (63)
142 2b0l_A GTP-sensing transcripti 79.5 0.81 2.8E-05 34.5 1.9 37 189-225 40-77 (102)
143 2ve8_A FTSK, DNA translocase F 79.5 3.3 0.00011 29.9 5.1 47 179-225 12-58 (73)
144 1top_A Troponin C; contractIle 79.3 9.2 0.00031 28.6 8.0 37 38-79 18-54 (162)
145 4ds7_A Calmodulin, CAM; protei 79.1 16 0.00055 26.6 9.3 36 38-78 9-44 (147)
146 1wdc_B Scallop myosin; calcium 78.9 15 0.00051 27.5 9.2 37 38-79 16-52 (156)
147 1uly_A Hypothetical protein PH 78.9 3 0.0001 34.8 5.4 47 177-224 20-66 (192)
148 1hsj_A Fusion protein consisti 78.7 3.9 0.00013 37.7 6.7 56 172-227 399-456 (487)
149 1p4x_A Staphylococcal accessor 78.1 5.3 0.00018 34.6 7.0 56 172-227 153-210 (250)
150 1wdc_C Scallop myosin; calcium 77.0 20 0.0007 26.6 10.9 37 38-79 7-45 (156)
151 2mys_B Myosin; muscle protein, 76.5 11 0.00039 28.5 7.9 37 38-79 23-60 (166)
152 2obp_A Putative DNA-binding pr 76.0 5.5 0.00019 30.0 5.6 52 175-226 14-71 (96)
153 3j04_B Myosin regulatory light 75.9 5.3 0.00018 29.5 5.6 38 37-79 4-41 (143)
154 2xvc_A ESCRT-III, SSO0910; cel 75.6 2.2 7.7E-05 29.6 3.0 37 109-154 17-53 (59)
155 1ggw_A Protein (CDC4P); light 75.4 2.5 8.7E-05 31.2 3.7 33 42-79 7-39 (140)
156 3iz6_V 40S ribosomal protein S 75.4 1.2 4.2E-05 34.5 1.9 37 188-224 57-93 (108)
157 4a0z_A Transcription factor FA 75.3 2.9 9.8E-05 35.0 4.3 44 177-220 12-55 (190)
158 2i3o_A Gamma-glutamyltransfera 74.8 3.4 0.00012 39.9 5.2 32 91-126 199-231 (516)
159 2fsw_A PG_0823 protein; alpha- 74.2 8.3 0.00028 28.4 6.3 44 182-226 30-74 (107)
160 2bl0_C Myosin regulatory light 74.1 23 0.00078 25.8 9.1 36 38-78 4-39 (142)
161 1r7j_A Conserved hypothetical 74.1 4.9 0.00017 29.7 4.9 41 182-224 13-53 (95)
162 3lmm_A Uncharacterized protein 73.2 3.6 0.00012 40.2 5.0 43 175-217 428-470 (583)
163 2f2o_A Calmodulin fused with c 73.2 23 0.00079 27.0 9.0 37 38-79 9-45 (179)
164 3dtp_E RLC, myosin regulatory 73.0 6.8 0.00023 31.3 6.0 36 39-79 56-91 (196)
165 2ovk_C Myosin catalytic light 73.0 27 0.00092 26.1 10.4 94 37-157 6-101 (159)
166 2y75_A HTH-type transcriptiona 72.8 7.1 0.00024 29.7 5.8 35 189-223 24-58 (129)
167 3u0k_A Rcamp; fluorescent prot 72.7 9.8 0.00033 36.2 7.7 93 37-157 299-391 (440)
168 2jnf_A Troponin C; stretch act 71.8 23 0.0008 26.3 8.6 37 38-79 11-48 (158)
169 1yyv_A Putative transcriptiona 71.5 8.6 0.00029 29.8 6.0 44 182-226 40-84 (131)
170 2xrn_A HTH-type transcriptiona 71.4 6.9 0.00024 33.2 5.9 46 181-226 10-56 (241)
171 1mkm_A ICLR transcriptional re 70.8 10 0.00035 32.2 6.9 44 181-224 12-56 (249)
172 2lhi_A Calmodulin, serine/thre 70.6 2.8 9.7E-05 33.5 3.1 37 38-79 9-45 (176)
173 2e0w_A Gamma-glutamyltranspept 70.3 4.9 0.00017 39.2 5.2 74 45-126 162-246 (556)
174 2f2e_A PA1607; transcription f 69.6 15 0.00051 28.8 7.1 45 182-227 29-73 (146)
175 2p5k_A Arginine repressor; DNA 69.4 14 0.00046 24.2 5.9 40 181-223 9-53 (64)
176 2kmu_A ATP-dependent DNA helic 69.4 2.8 9.6E-05 28.8 2.4 37 32-71 6-48 (56)
177 2fe3_A Peroxide operon regulat 68.8 17 0.00056 28.5 7.3 52 176-227 21-78 (145)
178 1wi9_A Protein C20ORF116 homol 68.2 8.7 0.0003 27.7 4.8 44 183-226 13-58 (72)
179 1bia_A BIRA bifunctional prote 67.9 6.9 0.00023 34.9 5.3 44 179-222 7-50 (321)
180 1z6r_A MLC protein; transcript 67.5 8.1 0.00028 35.0 5.8 45 179-223 18-62 (406)
181 3tqn_A Transcriptional regulat 67.2 5.1 0.00017 30.2 3.7 32 193-224 35-66 (113)
182 4ham_A LMO2241 protein; struct 67.0 5 0.00017 31.1 3.7 35 191-225 37-72 (134)
183 3a4c_A DNA replication factor 66.8 41 0.0014 25.8 9.3 69 113-187 29-98 (106)
184 2l01_A Uncharacterized protein 66.7 14 0.00049 26.9 5.8 56 182-240 15-71 (77)
185 3by6_A Predicted transcription 66.6 5.2 0.00018 30.9 3.7 34 191-224 34-68 (126)
186 4a5n_A Uncharacterized HTH-typ 66.2 17 0.00057 28.5 6.7 39 189-227 37-76 (131)
187 2dg5_A Gamma-glutamyltranspept 66.1 6.7 0.00023 36.2 5.0 74 45-126 162-246 (366)
188 2bl0_B Myosin regulatory light 66.0 25 0.00087 25.5 7.5 33 42-79 7-39 (145)
189 2qmc_A GGT, gamma-glutamyltran 65.6 8.5 0.00029 35.7 5.6 32 91-126 225-257 (377)
190 2v36_A Gamma-glutamyltranspept 65.3 5 0.00017 37.2 3.9 32 91-126 210-242 (376)
191 3neu_A LIN1836 protein; struct 65.3 5.7 0.00019 30.5 3.7 33 193-225 39-71 (125)
192 2qc0_A Uncharacterized protein 65.1 9.4 0.00032 34.9 5.8 47 179-225 299-345 (373)
193 3r4k_A Transcriptional regulat 65.1 5.4 0.00018 34.4 3.9 46 182-227 11-57 (260)
194 2ek5_A Predicted transcription 64.9 6.9 0.00024 30.4 4.2 34 191-224 27-61 (129)
195 1p4x_A Staphylococcal accessor 64.8 15 0.00052 31.7 6.8 63 172-235 29-93 (250)
196 1mzb_A Ferric uptake regulatio 64.7 21 0.00073 27.5 7.1 52 176-227 17-75 (136)
197 2o03_A Probable zinc uptake re 64.4 14 0.00049 28.3 6.0 50 178-227 12-67 (131)
198 1q80_A SCP, sarcoplasmic calci 64.3 43 0.0015 25.1 9.3 127 38-200 4-153 (174)
199 3mse_B Calcium-dependent prote 63.9 23 0.0008 27.5 7.3 36 37-77 36-71 (180)
200 2zkz_A Transcriptional repress 63.7 13 0.00044 27.0 5.3 56 179-238 29-84 (99)
201 1dtl_A Cardiac troponin C; hel 63.2 43 0.0015 24.8 8.5 93 39-156 17-110 (161)
202 1nya_A Calerythrin; EF-hand, m 63.0 30 0.001 26.0 7.7 82 38-130 5-87 (176)
203 3df8_A Possible HXLR family tr 62.2 14 0.00046 27.6 5.3 44 182-226 32-78 (111)
204 1w7j_B Myosin light chain 1; m 62.1 9.3 0.00032 28.4 4.4 37 38-79 8-44 (151)
205 1qv0_A Obelin, OBL; photoprote 61.7 11 0.00038 29.2 5.0 39 39-78 19-58 (195)
206 2p4w_A Transcriptional regulat 61.7 18 0.00062 30.2 6.5 47 179-226 17-63 (202)
207 2w48_A Sorbitol operon regulat 61.2 14 0.00049 32.5 6.1 35 188-222 18-52 (315)
208 1z05_A Transcriptional regulat 61.2 10 0.00036 34.7 5.3 46 179-224 41-86 (429)
209 2gqq_A Leucine-responsive regu 60.8 1.8 6.3E-05 34.5 0.1 44 179-222 15-58 (163)
210 1v4r_A Transcriptional repress 60.0 3.2 0.00011 30.5 1.3 35 190-224 33-68 (102)
211 3mq0_A Transcriptional repress 59.5 9.6 0.00033 33.1 4.6 44 182-225 35-79 (275)
212 2nlz_A Cephalosporin acylase; 59.4 13 0.00045 36.1 5.9 32 91-126 215-247 (547)
213 3lwf_A LIN1550 protein, putati 59.3 15 0.00052 29.6 5.4 40 183-222 34-75 (159)
214 3go5_A Multidomain protein wit 59.2 20 0.00068 31.8 6.6 52 174-225 221-279 (285)
215 3jtn_A YPBH, adapter protein M 58.6 49 0.0017 23.9 7.8 60 139-199 9-72 (91)
216 3akb_A Putative calcium bindin 58.4 53 0.0018 24.2 9.4 40 39-79 3-42 (166)
217 3f8m_A GNTR-family protein tra 58.4 8.9 0.00031 32.8 4.1 35 189-223 33-68 (248)
218 1alv_A Calpain, S-camld; calci 58.3 32 0.0011 26.3 7.1 94 38-150 2-106 (173)
219 1hw1_A FADR, fatty acid metabo 58.3 9.2 0.00031 31.8 4.1 37 189-225 28-65 (239)
220 3k21_A PFCDPK3, calcium-depend 58.2 24 0.00083 27.9 6.5 36 38-78 50-85 (191)
221 3t8r_A Staphylococcus aureus C 58.1 16 0.00053 28.7 5.2 40 183-222 18-59 (143)
222 3c7j_A Transcriptional regulat 58.0 9.1 0.00031 32.4 4.1 37 189-225 47-83 (237)
223 1ylf_A RRF2 family protein; st 58.0 13 0.00043 29.3 4.6 40 183-222 21-61 (149)
224 2o0m_A Transcriptional regulat 57.4 2.2 7.5E-05 38.5 0.0 49 174-222 17-65 (345)
225 3bwg_A Uncharacterized HTH-typ 57.3 11 0.00038 31.9 4.5 36 189-224 26-62 (239)
226 3nyv_A Calmodulin-domain prote 57.0 35 0.0012 31.0 8.2 102 37-157 332-434 (484)
227 2xub_A DNA-directed RNA polyme 56.8 70 0.0024 30.5 10.5 125 96-226 259-409 (534)
228 1j5y_A Transcriptional regulat 56.3 18 0.00061 29.4 5.5 45 179-223 23-69 (187)
229 1m45_A MLC1P, myosin light cha 56.2 9.6 0.00033 28.2 3.5 31 43-78 7-37 (148)
230 2q5c_A NTRC family transcripti 55.9 62 0.0021 26.6 8.8 142 58-217 11-182 (196)
231 2xig_A Ferric uptake regulatio 55.9 21 0.00071 28.2 5.6 52 176-227 26-83 (150)
232 3mwm_A ZUR, putative metal upt 55.5 24 0.00082 27.4 5.9 61 175-237 12-78 (139)
233 3rkx_A Biotin-[acetyl-COA-carb 55.4 17 0.00058 32.6 5.6 43 179-221 5-49 (323)
234 3edp_A LIN2111 protein; APC883 55.2 11 0.00038 32.0 4.1 35 190-224 31-66 (236)
235 2l02_A Uncharacterized protein 54.9 48 0.0016 24.3 6.9 55 181-238 12-66 (82)
236 3r07_C Putative lipoate-protei 54.3 16 0.00053 26.9 4.3 51 93-148 37-89 (91)
237 1uhk_A Aequorin 2, aequorin; E 53.8 19 0.00064 27.7 5.0 40 38-78 14-54 (191)
238 2kn2_A Calmodulin; S MAPK phos 53.8 49 0.0017 22.4 7.3 84 39-148 8-91 (92)
239 3u1d_A Uncharacterized protein 53.6 46 0.0016 26.9 7.4 44 181-224 33-79 (151)
240 3sxy_A Transcriptional regulat 53.1 12 0.00039 31.0 3.8 37 189-225 33-69 (218)
241 2bec_A Calcineurin B homologou 53.0 9.3 0.00032 30.3 3.1 36 38-79 27-62 (202)
242 2wv0_A YVOA, HTH-type transcri 52.8 11 0.00038 32.1 3.7 35 190-224 32-67 (243)
243 3k69_A Putative transcription 52.7 14 0.0005 29.7 4.2 38 184-221 20-58 (162)
244 3eqx_A FIC domain containing t 52.6 17 0.00057 33.4 5.1 58 181-240 301-358 (373)
245 2g7u_A Transcriptional regulat 52.6 13 0.00046 31.6 4.3 43 182-224 19-62 (257)
246 2o0y_A Transcriptional regulat 52.4 12 0.00041 32.1 3.9 44 182-225 28-72 (260)
247 3ll8_B Calcineurin subunit B t 52.2 52 0.0018 24.0 7.2 22 38-59 4-25 (155)
248 3nw0_A Non-structural maintena 52.0 99 0.0034 26.4 9.7 107 115-223 17-153 (238)
249 1wy9_A Allograft inflammatory 51.9 7.4 0.00025 30.0 2.3 94 31-158 39-132 (147)
250 2hoe_A N-acetylglucosamine kin 51.7 11 0.00038 33.9 3.8 43 181-224 24-66 (380)
251 1n93_X P40 nucleoprotein; RNA 51.3 18 0.0006 32.6 4.8 42 34-75 137-179 (375)
252 2opo_A Polcalcin CHE A 3; calc 51.2 52 0.0018 22.0 7.6 76 38-146 9-85 (86)
253 3ozy_A Putative mandelate race 50.7 8.1 0.00028 35.4 2.7 78 137-227 149-230 (389)
254 2k6x_A Sigma-A, RNA polymerase 50.6 37 0.0013 23.6 5.7 45 182-226 14-63 (72)
255 2hs5_A Putative transcriptiona 50.6 12 0.00042 31.5 3.7 38 189-226 49-86 (239)
256 2pi2_A Replication protein A 3 50.4 3.3 0.00011 36.3 0.0 49 174-222 204-256 (270)
257 1jhf_A LEXA repressor; LEXA SO 50.3 33 0.0011 27.7 6.2 52 174-225 3-60 (202)
258 1fse_A GERE; helix-turn-helix 50.2 37 0.0013 22.4 5.5 43 172-216 9-51 (74)
259 2w57_A Ferric uptake regulatio 50.0 40 0.0014 26.4 6.5 52 176-227 16-74 (150)
260 2qq9_A Diphtheria toxin repres 49.9 26 0.00089 29.3 5.6 51 174-224 3-57 (226)
261 3eyy_A Putative iron uptake re 49.8 26 0.0009 27.4 5.3 51 176-226 18-73 (145)
262 3kdg_A DNA mismatch repair pro 48.8 30 0.001 28.6 5.7 86 137-224 66-174 (197)
263 1fx7_A Iron-dependent represso 48.7 16 0.00055 30.6 4.1 50 175-225 4-58 (230)
264 1xd7_A YWNA; structural genomi 48.5 24 0.00082 27.5 4.8 38 183-221 16-53 (145)
265 3eet_A Putative GNTR-family tr 48.4 14 0.00048 32.1 3.7 35 190-224 51-86 (272)
266 3sjs_A URE3-BP sequence specif 48.1 66 0.0023 26.1 7.8 34 40-78 51-84 (220)
267 1ufm_A COP9 complex subunit 4; 47.0 38 0.0013 24.4 5.4 45 182-226 21-67 (84)
268 3lij_A Calcium/calmodulin depe 46.5 29 0.00098 31.9 5.8 98 38-157 344-442 (494)
269 2dk8_A DNA-directed RNA polyme 46.2 82 0.0028 22.8 7.6 62 97-171 13-74 (81)
270 3qyf_A Crispr-associated prote 45.7 27 0.00092 31.8 5.2 47 171-224 205-251 (324)
271 2qen_A Walker-type ATPase; unk 45.6 54 0.0019 27.7 7.1 47 177-224 282-333 (350)
272 3ihu_A Transcriptional regulat 45.6 17 0.00059 30.0 3.7 37 189-225 37-73 (222)
273 3tl8_B Effector protein hopab2 45.6 60 0.0021 25.1 6.4 59 15-80 27-88 (117)
274 3maj_A DNA processing chain A; 45.5 23 0.0008 32.9 4.9 49 173-222 324-372 (382)
275 4a6d_A Hydroxyindole O-methylt 45.5 30 0.001 30.7 5.5 39 189-227 41-79 (353)
276 3mwu_A Calmodulin-domain prote 45.3 78 0.0027 28.8 8.5 145 37-200 328-478 (486)
277 1tc3_C Protein (TC3 transposas 45.1 29 0.00098 20.5 3.9 45 172-218 3-48 (51)
278 2ia2_A Putative transcriptiona 45.0 15 0.00052 31.5 3.4 43 182-224 26-69 (265)
279 1lva_A Selenocysteine-specific 44.7 1.5E+02 0.005 25.3 12.5 128 93-239 61-200 (258)
280 2lf3_A Effector protein hopab3 44.7 70 0.0024 24.3 6.5 59 15-80 21-82 (107)
281 2p7v_B Sigma-70, RNA polymeras 44.6 51 0.0017 21.8 5.5 44 174-217 5-51 (68)
282 1tzy_D Histone H4-VI; histone- 43.9 40 0.0014 25.2 5.2 15 136-150 80-94 (103)
283 2di3_A Bacterial regulatory pr 43.6 18 0.0006 30.3 3.5 34 190-223 26-60 (239)
284 3nxa_A Protein S100-A16; S100 42.4 89 0.0031 22.6 6.9 76 34-130 5-84 (100)
285 1alv_A Calpain, S-camld; calci 42.2 1.1E+02 0.0037 23.1 8.6 95 27-157 64-158 (173)
286 3qph_A TRMB, A global transcri 42.2 1.2 4E-05 40.6 -4.4 58 176-237 17-74 (342)
287 3tl4_X Glutaminyl-tRNA synthet 42.1 27 0.00091 29.3 4.3 54 50-111 17-70 (187)
288 2jjz_A Ionized calcium-binding 41.7 13 0.00046 28.5 2.3 90 35-158 45-134 (150)
289 1ku3_A Sigma factor SIGA; heli 41.6 63 0.0021 21.6 5.6 42 173-214 9-53 (73)
290 1fnn_A CDC6P, cell division co 41.5 38 0.0013 29.3 5.5 79 135-226 259-353 (389)
291 3ro6_B Putative chloromuconate 40.9 15 0.00051 33.0 2.8 77 138-227 139-219 (356)
292 3hug_A RNA polymerase sigma fa 40.7 56 0.0019 23.0 5.4 41 174-215 37-77 (92)
293 2lf6_A Effector protein hopab1 40.6 55 0.0019 24.7 5.4 60 14-80 9-71 (101)
294 2jt1_A PEFI protein; solution 40.6 23 0.00079 25.3 3.2 45 101-154 7-52 (77)
295 1ldj_A Cullin homolog 1, CUL-1 40.4 35 0.0012 34.1 5.6 69 152-224 568-636 (760)
296 1tiz_A Calmodulin-related prot 39.9 66 0.0023 20.0 5.9 36 113-152 13-48 (67)
297 3sg6_A Gcamp2, myosin light ch 39.9 1.1E+02 0.0039 28.7 8.8 36 38-78 310-345 (450)
298 3dv8_A Transcriptional regulat 39.9 36 0.0012 26.9 4.8 34 191-224 169-202 (220)
299 1in4_A RUVB, holliday junction 39.7 1E+02 0.0035 26.8 8.1 73 136-226 236-312 (334)
300 3b09_A Peptidyl-prolyl CIS-tra 39.3 71 0.0024 23.3 5.9 55 94-151 31-85 (88)
301 3dpu_A RAB family protein; roc 39.1 20 0.0007 33.7 3.6 115 116-243 236-372 (535)
302 2v9v_A Selenocysteine-specific 39.0 1.2E+02 0.004 22.6 10.1 100 113-225 13-123 (135)
303 3cta_A Riboflavin kinase; stru 38.9 42 0.0014 27.8 5.2 51 174-224 4-60 (230)
304 1ug2_A 2610100B20RIK gene prod 38.5 66 0.0023 24.2 5.5 40 178-217 40-82 (95)
305 3eez_A Putative mandelate race 38.3 12 0.00041 34.1 1.7 76 138-227 144-223 (378)
306 3cs1_A Flagellar calcium-bindi 38.3 82 0.0028 25.2 6.8 38 37-79 45-83 (219)
307 3dpt_A ROCO, RAB family protei 37.9 18 0.00061 32.8 2.8 132 94-244 16-170 (332)
308 3ugv_A Enolase; enzyme functio 37.8 15 0.00051 33.7 2.3 81 138-228 170-255 (390)
309 2o8x_A Probable RNA polymerase 37.7 81 0.0028 20.3 5.6 41 174-215 15-55 (70)
310 1k94_A Grancalcin; penta-EF-ha 37.4 1.3E+02 0.0043 22.5 8.8 94 27-157 57-150 (165)
311 2o34_A Hypothetical protein; s 37.2 57 0.002 28.4 5.9 52 33-84 47-107 (250)
312 3c57_A Two component transcrip 36.8 65 0.0022 23.0 5.3 42 173-216 26-67 (95)
313 3rii_A Ubiquitin carboxyl-term 36.8 14 0.00048 32.0 1.8 21 56-79 15-35 (233)
314 1je8_A Nitrate/nitrite respons 36.8 61 0.0021 22.5 5.0 44 171-216 18-61 (82)
315 3f2g_A Alkylmercury lyase; MER 36.4 31 0.0011 29.6 4.0 44 181-227 26-69 (220)
316 1x3u_A Transcriptional regulat 36.3 74 0.0025 21.2 5.3 41 174-216 16-56 (79)
317 3e3r_A Calcyphosin, calcyphosi 36.3 33 0.0011 26.7 3.9 38 36-78 33-70 (204)
318 3dp7_A SAM-dependent methyltra 36.1 42 0.0014 29.7 5.0 36 189-224 48-83 (363)
319 1tty_A Sigma-A, RNA polymerase 36.0 86 0.0029 21.8 5.8 43 174-216 18-63 (87)
320 4a35_A Mitochondrial enolase s 35.4 18 0.00063 33.8 2.5 78 138-228 200-281 (441)
321 2pjp_A Selenocysteine-specific 35.0 87 0.003 23.4 6.0 59 176-239 2-63 (121)
322 2hpk_A Photoprotein berovin; s 34.6 50 0.0017 26.0 4.8 44 136-201 143-188 (208)
323 2r3s_A Uncharacterized protein 34.3 47 0.0016 28.4 4.9 35 190-224 38-72 (335)
324 1juo_A Sorcin; calcium-binding 34.3 1.1E+02 0.0036 23.9 6.7 31 42-78 35-65 (198)
325 3ic7_A Putative transcriptiona 34.1 8 0.00027 29.7 -0.2 32 193-224 37-68 (126)
326 3rr1_A GALD, putative D-galact 33.8 17 0.0006 33.5 2.1 86 137-227 123-213 (405)
327 2ip2_A Probable phenazine-spec 33.7 63 0.0022 27.8 5.6 35 190-224 40-74 (334)
328 1x19_A CRTF-related protein; m 33.6 56 0.0019 28.6 5.4 35 190-224 63-97 (359)
329 2fna_A Conserved hypothetical 33.6 83 0.0028 26.5 6.3 48 175-224 288-341 (357)
330 2f3o_A PFLD, PFL2, pyruvate fo 33.4 1.5E+02 0.005 30.0 8.9 104 48-165 215-340 (776)
331 2qlz_A Transcription factor PF 33.4 29 0.00099 29.7 3.3 44 179-223 14-57 (232)
332 3nr7_A DNA-binding protein H-N 33.3 59 0.002 23.8 4.5 47 32-78 26-75 (86)
333 2k9l_A RNA polymerase sigma fa 33.1 71 0.0024 22.3 4.9 44 101-153 31-75 (76)
334 1qzz_A RDMB, aclacinomycin-10- 33.1 78 0.0027 27.6 6.2 36 189-224 47-82 (374)
335 1r42_A Angiotensin I convertin 32.8 67 0.0023 31.1 6.1 63 67-150 526-591 (615)
336 4fmr_A Uncharacterized hypothe 32.7 69 0.0023 28.2 5.7 53 113-170 28-86 (265)
337 4fxe_A Antitoxin RELB; toxin/a 32.7 22 0.00077 25.6 2.1 23 57-79 6-28 (79)
338 3toy_A Mandelate racemase/muco 32.5 23 0.00078 32.3 2.6 79 138-227 166-248 (383)
339 3q45_A Mandelate racemase/muco 32.4 16 0.00056 33.0 1.6 76 139-227 140-219 (368)
340 2x48_A CAG38821; archeal virus 32.3 92 0.0032 19.4 5.6 49 159-212 4-52 (55)
341 2pju_A Propionate catabolism o 32.2 1.9E+02 0.0066 24.3 8.3 148 57-217 18-193 (225)
342 2fmy_A COOA, carbon monoxide o 32.2 57 0.0019 25.9 4.8 34 191-224 167-200 (220)
343 4dm9_A Ubiquitin carboxyl-term 31.5 22 0.00076 30.6 2.2 20 56-78 10-29 (228)
344 3eyi_A Z-DNA-binding protein 1 31.4 1.2E+02 0.0042 21.6 5.7 55 174-228 6-62 (72)
345 3nso_A Protein S100-A3; EF-han 31.4 1.3E+02 0.0044 21.9 6.3 42 116-157 27-69 (101)
346 3r0u_A Enzyme of enolase super 31.2 25 0.00086 32.0 2.7 77 138-227 141-223 (379)
347 1avs_A Troponin C; muscle cont 31.2 1.2E+02 0.0041 20.3 6.2 36 113-152 32-67 (90)
348 1tw3_A COMT, carminomycin 4-O- 31.2 74 0.0025 27.6 5.7 36 189-224 50-85 (360)
349 3e6c_C CPRK, cyclic nucleotide 30.9 60 0.002 26.4 4.8 35 191-225 177-211 (250)
350 1bjf_A Neurocalcin delta; calc 30.8 1.7E+02 0.006 22.1 9.5 29 45-78 30-59 (193)
351 2b1u_A Calmodulin-like protein 30.8 1E+02 0.0034 19.3 5.7 40 113-156 18-57 (71)
352 2p8t_A Hypothetical protein PH 30.5 86 0.0029 26.4 5.7 37 189-225 28-64 (200)
353 4eto_A Protein S100-A4; calciu 30.3 1E+02 0.0035 21.9 5.4 41 116-156 27-68 (93)
354 2dk8_A DNA-directed RNA polyme 30.1 1.6E+02 0.0053 21.3 6.9 54 179-235 16-71 (81)
355 2ccm_A Calexcitin; EF hand, ca 30.0 1.3E+02 0.0046 22.8 6.6 40 39-79 11-51 (191)
356 3nw0_B Melanoma-associated ant 29.9 2.5E+02 0.0086 23.7 9.3 127 94-228 6-162 (217)
357 1v4r_A Transcriptional repress 29.8 60 0.0021 23.3 4.1 72 93-176 10-83 (102)
358 1xd3_A Ubiquitin carboxyl-term 29.7 25 0.00086 30.3 2.3 20 56-78 8-27 (230)
359 2l76_A Nfatc2-interacting prot 29.7 24 0.00081 26.6 1.8 26 55-80 35-60 (95)
360 3pfi_A Holliday junction ATP-d 29.5 2.4E+02 0.0082 23.9 8.7 71 136-224 240-313 (338)
361 2iie_A Integration HOST factor 29.3 87 0.003 26.2 5.5 61 94-159 18-88 (204)
362 2wdt_A Ubiquitin carboxyl-term 29.1 26 0.0009 30.3 2.3 21 56-79 9-29 (232)
363 1s6j_A CDPK, calcium-dependent 29.0 1.1E+02 0.0036 20.3 5.1 40 113-156 35-74 (87)
364 3n22_A Protein S100-A2; EF-han 29.0 47 0.0016 24.0 3.4 46 111-156 23-69 (98)
365 2yfw_B Histone H4, H4; cell cy 28.8 86 0.0029 23.4 4.9 15 136-150 80-94 (103)
366 3i53_A O-methyltransferase; CO 28.8 88 0.003 26.9 5.7 36 189-224 36-71 (332)
367 2krc_A DNA-directed RNA polyme 28.7 27 0.00093 26.3 2.0 61 103-170 15-79 (99)
368 3ulq_B Transcriptional regulat 28.7 1.1E+02 0.0038 21.7 5.4 43 172-216 27-69 (90)
369 2y5i_A S100Z, S100 calcium bin 28.6 93 0.0032 22.2 5.0 45 112-156 23-68 (99)
370 2qlz_A Transcription factor PF 28.6 62 0.0021 27.6 4.6 44 181-224 168-211 (232)
371 1cf7_A Protein (transcription 28.2 1E+02 0.0035 21.9 5.0 42 181-222 18-62 (76)
372 1r9d_A Glycerol dehydratase; r 28.2 1.6E+02 0.0054 29.8 8.1 94 58-165 233-347 (787)
373 2joj_A Centrin protein; N-term 28.2 1.2E+02 0.0041 19.4 5.7 35 114-152 20-54 (77)
374 1jba_A GCAP-2, protein (guanyl 28.1 2.1E+02 0.0071 22.1 8.6 30 42-76 24-54 (204)
375 2p2u_A HOST-nuclease inhibitor 27.9 1.2E+02 0.0043 24.5 6.1 30 31-60 53-82 (171)
376 2oz6_A Virulence factor regula 27.5 54 0.0018 25.6 3.8 34 191-224 164-197 (207)
377 1gjy_A Sorcin, CP-22, V19; cal 27.4 1.9E+02 0.0066 21.5 8.3 94 27-157 59-152 (167)
378 3b0c_W CENP-W, centromere prot 27.3 57 0.002 22.9 3.5 35 93-150 36-70 (76)
379 2gau_A Transcriptional regulat 27.1 61 0.0021 25.9 4.1 34 191-224 180-213 (232)
380 2r2i_A Guanylyl cyclase-activa 27.1 1.7E+02 0.0058 22.5 6.7 122 43-203 17-159 (198)
381 2y75_A HTH-type transcriptiona 27.0 1.6E+02 0.0054 21.8 6.3 75 98-188 9-86 (129)
382 2v7f_A RPS19, RPS19E SSU ribos 26.9 60 0.002 26.0 3.9 37 189-225 65-115 (150)
383 2ra5_A Putative transcriptiona 26.7 13 0.00046 31.6 -0.0 35 190-224 38-73 (247)
384 2znd_A Programmed cell death p 26.6 1.6E+02 0.0055 22.0 6.3 108 40-156 7-125 (172)
385 4dwd_A Mandelate racemase/muco 26.6 37 0.0013 31.0 3.0 84 138-227 138-226 (393)
386 2zcw_A TTHA1359, transcription 26.6 58 0.002 25.5 3.8 33 192-224 147-179 (202)
387 1b4a_A Arginine repressor; hel 26.3 1.7E+02 0.0057 23.3 6.5 57 178-238 6-66 (149)
388 3b02_A Transcriptional regulat 26.2 59 0.002 25.4 3.8 33 192-224 140-172 (195)
389 3zwh_A Protein S100-A4; Ca-bin 26.2 1.5E+02 0.0052 21.6 5.9 42 115-156 29-71 (104)
390 2of5_H Leucine-rich repeat and 26.2 91 0.0031 23.6 4.7 80 56-150 5-96 (118)
391 2l0k_A Stage III sporulation p 26.2 63 0.0022 23.8 3.6 35 178-213 8-42 (93)
392 1ais_B TFB TFIIB, protein (tra 26.1 2.5E+02 0.0085 22.4 7.9 107 45-154 71-194 (200)
393 3nqb_A Adenine deaminase 2; PS 26.1 50 0.0017 32.0 3.9 34 138-173 490-523 (608)
394 2fu4_A Ferric uptake regulatio 26.0 91 0.0031 21.2 4.4 48 101-155 20-67 (83)
395 3sjn_A Mandelate racemase/muco 26.0 18 0.00061 32.8 0.7 77 140-227 147-229 (374)
396 2o03_A Probable zinc uptake re 25.9 1.4E+02 0.0047 22.5 5.8 47 101-155 14-60 (131)
397 1k2h_A S100A1, S-100 protein, 25.8 1.5E+02 0.0052 19.8 6.3 39 34-77 3-48 (93)
398 1or7_A Sigma-24, RNA polymeras 25.8 1.3E+02 0.0046 23.1 5.9 41 174-215 140-180 (194)
399 2lnk_A Protein S100-A4; EF-han 25.7 78 0.0027 23.7 4.2 38 115-152 38-76 (113)
400 1msz_A DNA-binding protein smu 25.7 75 0.0026 23.4 3.9 38 42-79 21-62 (86)
401 3rm1_A Protein S100-B; alpha-h 25.4 1.7E+02 0.0058 20.2 5.8 37 116-152 26-63 (92)
402 1id3_B Histone H4; nucleosome 25.1 1.5E+02 0.0053 22.0 5.7 15 136-150 79-93 (102)
403 3hot_A Transposable element ma 25.1 2.4E+02 0.0083 24.0 7.9 81 119-210 24-105 (345)
404 3f8t_A Predicted ATPase involv 25.1 55 0.0019 31.6 3.9 76 60-152 395-485 (506)
405 3kcc_A Catabolite gene activat 25.1 76 0.0026 26.2 4.5 34 191-224 217-250 (260)
406 2kn2_A Calmodulin; S MAPK phos 25.1 1.6E+02 0.0053 19.7 6.2 38 113-154 21-58 (92)
407 1tzz_A Hypothetical protein L1 25.0 33 0.0011 31.1 2.2 77 139-227 165-245 (392)
408 3lst_A CALO1 methyltransferase 25.0 62 0.0021 28.3 4.0 35 189-223 53-87 (348)
409 2ehb_A Calcineurin B-like prot 24.9 1.1E+02 0.0037 23.8 5.2 23 38-60 35-59 (207)
410 3rcy_A Mandelate racemase/muco 24.9 38 0.0013 31.5 2.7 86 138-228 145-239 (433)
411 3g9k_L Capsule biosynthesis pr 24.9 50 0.0017 29.9 3.4 26 91-125 189-215 (323)
412 2aao_A CDPK, calcium-dependent 24.9 1.7E+02 0.0059 21.4 6.2 37 38-79 25-61 (166)
413 1e5p_A Aphrodisin; lipocalin, 24.9 41 0.0014 25.6 2.5 20 59-78 118-137 (151)
414 1jko_C HIN recombinase, DNA-in 24.8 1.1E+02 0.0039 18.0 4.6 38 172-211 3-41 (52)
415 3ik4_A Mandelate racemase/muco 24.7 47 0.0016 29.9 3.2 80 138-227 142-224 (365)
416 2xns_C RGS14, regulator of G-p 24.7 66 0.0022 20.3 2.9 14 136-149 22-35 (40)
417 3e97_A Transcriptional regulat 24.6 65 0.0022 25.7 3.8 34 191-224 175-208 (231)
418 2d58_A Allograft inflammatory 24.6 1.8E+02 0.0062 20.2 6.3 37 112-152 43-79 (107)
419 1b67_A Protein (histone HMFA); 24.4 31 0.0011 23.5 1.5 16 136-151 53-68 (68)
420 1sjj_A Actinin; 3-helix bundle 24.3 89 0.0031 30.9 5.4 34 114-150 774-807 (863)
421 2rnj_A Response regulator prot 24.3 89 0.0031 21.9 4.1 43 173-217 28-70 (91)
422 2ovl_A Putative racemase; stru 24.3 36 0.0012 30.5 2.4 77 138-227 145-226 (371)
423 4ets_A Ferric uptake regulatio 24.2 1.6E+02 0.0056 23.2 6.1 50 176-225 32-89 (162)
424 1juo_A Sorcin; calcium-binding 24.1 2.2E+02 0.0076 21.9 6.9 35 113-157 149-183 (198)
425 1cmx_A Protein (ubiquitin YUH1 24.1 33 0.0011 29.8 1.9 21 55-78 9-29 (235)
426 1rp3_A RNA polymerase sigma fa 23.9 1.6E+02 0.0054 23.4 6.1 40 174-214 187-226 (239)
427 1wcn_A Transcription elongatio 23.7 60 0.0021 22.6 3.0 32 192-225 37-68 (70)
428 1p4w_A RCSB; solution structur 23.5 1.4E+02 0.0047 21.7 5.2 42 172-215 32-73 (99)
429 2i5g_A Amidohydrolase; NYSGXRC 23.4 20 0.00068 32.3 0.5 167 33-217 48-237 (325)
430 3rkx_A Biotin-[acetyl-COA-carb 23.4 1.8E+02 0.0062 25.7 6.9 65 101-179 6-71 (323)
431 4e5t_A Mandelate racemase / mu 23.3 24 0.00082 32.4 1.0 84 139-227 151-243 (404)
432 3my9_A Muconate cycloisomerase 23.3 34 0.0012 30.9 2.0 77 139-227 146-226 (377)
433 1ft9_A Carbon monoxide oxidati 23.1 75 0.0026 25.3 3.9 33 192-224 164-196 (222)
434 1y1x_A Leishmania major homolo 22.9 2.6E+02 0.0089 21.5 8.7 35 114-158 142-176 (191)
435 3ihr_A Ubiquitin carboxyl-term 22.9 34 0.0012 31.1 1.9 21 56-79 10-30 (328)
436 2qgq_A Protein TM_1862; alpha- 22.9 1E+02 0.0035 26.6 5.0 47 138-188 136-182 (304)
437 2dod_A Transcription elongatio 22.8 48 0.0017 24.0 2.4 20 62-81 18-37 (82)
438 1xsv_A Hypothetical UPF0122 pr 22.7 2E+02 0.0068 21.2 6.0 39 174-213 25-63 (113)
439 2ktg_A Calmodulin, putative; e 22.7 1.7E+02 0.0057 19.1 6.2 40 113-156 26-65 (85)
440 1k9u_A Polcalcin PHL P 7; poll 22.7 1.6E+02 0.0054 18.9 5.3 31 115-150 17-47 (78)
441 3mse_B Calcium-dependent prote 22.4 2.6E+02 0.0088 21.2 7.0 30 189-218 122-154 (180)
442 3d0s_A Transcriptional regulat 22.2 75 0.0026 25.2 3.8 33 192-224 178-210 (227)
443 2ct9_A Calcium-binding protein 22.2 2.7E+02 0.0092 21.6 7.1 36 38-79 27-62 (208)
444 3vcn_A Mannonate dehydratase; 22.1 38 0.0013 31.3 2.1 29 199-227 234-262 (425)
445 2opo_A Polcalcin CHE A 3; calc 22.0 1.7E+02 0.006 19.1 6.2 36 114-154 24-59 (86)
446 3sao_A Extracellular fatty aci 21.9 45 0.0016 25.9 2.3 21 58-78 119-139 (160)
447 2ggz_A Guanylyl cyclase-activa 21.8 2E+02 0.0068 22.6 6.3 51 136-202 108-162 (211)
448 2fe3_A Peroxide operon regulat 21.8 1.4E+02 0.0049 22.9 5.2 48 100-155 24-71 (145)
449 2rdx_A Mandelate racemase/muco 21.7 32 0.0011 31.0 1.5 74 138-226 144-222 (379)
450 1s7o_A Hypothetical UPF0122 pr 21.7 1.8E+02 0.0063 21.6 5.6 40 174-214 22-61 (113)
451 3ryp_A Catabolite gene activat 21.7 98 0.0034 24.0 4.3 34 191-224 167-200 (210)
452 1tkk_A Similar to chloromucona 21.6 46 0.0016 29.6 2.5 77 139-227 140-222 (366)
453 2ozt_A TLR1174 protein; struct 21.6 41 0.0014 29.8 2.2 80 139-228 116-200 (332)
454 1bj7_A D 2; allergen, lipocali 21.3 50 0.0017 25.3 2.4 20 59-78 123-142 (156)
455 1chr_A Chloromuconate cycloiso 21.2 51 0.0017 29.6 2.7 76 140-227 144-223 (370)
456 3tj4_A Mandelate racemase; eno 21.1 40 0.0014 30.4 2.0 77 139-227 151-232 (372)
457 1zyb_A Transcription regulator 20.9 83 0.0028 25.3 3.8 34 191-224 186-219 (232)
458 1i4d_A Arfaptin 2, partner of 20.9 1.6E+02 0.0056 25.1 5.7 47 15-61 150-203 (224)
459 2lv7_A Calcium-binding protein 20.9 99 0.0034 22.2 3.8 33 115-151 50-82 (100)
460 2kz2_A Calmodulin, CAM; TR2C, 20.8 2.1E+02 0.0072 19.6 6.1 30 116-149 44-73 (94)
461 3dpl_C Cullin-5; ubiquitin, NE 20.8 1.5E+02 0.0053 26.8 5.9 70 152-225 178-254 (382)
462 1dzk_A PIG OBP, odorant-bindin 20.8 54 0.0019 25.0 2.5 20 59-78 124-143 (157)
463 3mwm_A ZUR, putative metal upt 20.8 1.2E+02 0.0042 23.2 4.6 47 101-155 17-63 (139)
464 3u0k_A Rcamp; fluorescent prot 20.7 3.3E+02 0.011 25.7 8.2 47 26-77 295-350 (440)
465 3jva_A Dipeptide epimerase; en 20.6 27 0.00091 31.3 0.7 75 139-227 139-218 (354)
466 2w57_A Ferric uptake regulatio 20.5 1.5E+02 0.0053 22.9 5.2 47 101-155 20-67 (150)
467 2qm3_A Predicted methyltransfe 20.5 96 0.0033 27.6 4.4 45 179-225 45-89 (373)
468 1mdl_A Mandelate racemase; iso 20.4 41 0.0014 29.9 1.9 76 139-227 144-224 (359)
469 2lfw_A PHYR sigma-like domain; 20.2 1E+02 0.0035 23.6 4.0 42 173-215 92-133 (157)
470 1j7q_A CAVP, calcium vector pr 20.2 1.9E+02 0.0066 18.9 6.1 34 113-150 26-62 (86)
471 3dfg_A Xcrecx, regulatory prot 20.2 1.8E+02 0.0061 23.0 5.6 44 180-226 21-67 (162)
472 2l2e_A Calcium-binding protein 20.1 2.8E+02 0.0097 20.8 9.4 29 44-77 29-58 (190)
473 2wcb_A Protein S100-A12; calci 20.1 1.1E+02 0.0037 21.5 3.9 46 111-156 24-70 (95)
474 2fi0_A Conserved domain protei 20.1 51 0.0018 23.3 2.0 39 108-160 40-78 (81)
No 1
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=100.00 E-value=1.4e-89 Score=608.13 Aligned_cols=231 Identities=31% Similarity=0.621 Sum_probs=207.3
Q ss_pred CCCcchhhhhccHHHHHHHHhhcHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCCC-
Q 025599 2 RRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLA- 80 (250)
Q Consensus 2 rR~~Gi~ai~~~~~~~~~~~~~g~~l~~~~~~~l~~qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL~- 80 (250)
|||+||+||+ ++++++|+++|++++++|+++|++||++||++|++||++|++||++||+||++|++||++||||||+
T Consensus 1 rr~~G~~a~~--~~~~~~~~~~g~~l~~~~~~~l~~Ql~~F~~~L~~FA~kHk~eI~~dp~fR~~F~~mc~siGVDPLa~ 78 (233)
T 1u5t_A 1 MKQFGLAAFD--ELKDGKYNDVNKTILEKQSVELRDQLMVFQERLVEFAKKHNSELQASPEFRSKFMHMCSSIGIDPLSL 78 (233)
T ss_dssp ---------------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred CCCccHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccCHHHHHHHHHHHHHcCCCCCcc
Confidence 6889999999 7889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccccchhhhHHHHHHHhhhhcccCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEE
Q 025599 81 SNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVI 160 (250)
Q Consensus 81 s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~g~~vi 160 (250)
|+|| +++||+|||||||||||||||++||++|||||+|+||+|+|+|+ +.||||||+|||++|++| +||+++
T Consensus 79 s~kg--~~~lg~gdfy~eLavqIvEvC~~tr~~nGGli~l~el~~~~~r~-----~~IS~dDi~rAik~L~~L-~gf~v~ 150 (233)
T 1u5t_A 79 FDRD--KHLFTVNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRK-----LNVGLDDLEKSIDMLKSL-ECFEIF 150 (233)
T ss_dssp TTSS--GGGTTHHHHHHHHHHHHHHHHHHHTTTSSSCEEHHHHHHTTTTT-----TTCCHHHHHHHHHHHTTT-CCCCEE
T ss_pred CCcc--ccccCcchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHhh-----cCCCHHHHHHHHHHhhhc-cCeEEE
Confidence 9999 89999999999999999999999999999999999999999996 789999999999999999 999999
Q ss_pred EECCEEEEEecCCccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCCCCCCcceeecCcc
Q 025599 161 SVGKKKLVRSVPTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWFPCAS 240 (250)
Q Consensus 161 ~ig~~~~v~svp~El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw~P~l~ 240 (250)
++||++||||||.|||+||+.||++|+..||||+++|++++||++.||+++|++|+++|++|||+|.++ |+.|||||+|
T Consensus 151 ~v~g~~~vqsvp~el~~D~~~vLe~a~~~g~vt~~~L~~~lgW~~~Ra~~~L~~l~~~G~lwvD~q~~~-e~~Yw~P~lf 229 (233)
T 1u5t_A 151 QIRGKKFLRSVPNELTSDQTKILEICSILGYSSISLLKANLGWEAVRSKSALDEMVANGLLWIDYQGGA-EALYWDPSWI 229 (233)
T ss_dssp EETTEEEECCSSSCCCTTHHHHHHTTTTTSCCBHHHHHHHHCCCSHHHHHHHHHHHHTTSSEEECSSSS-SCEEECGGGG
T ss_pred EECCEEEEEeCCCccchHHHHHHHHHHhcCcCcHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeCCCCC-ccceechhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999853 8999999999
Q ss_pred CCC
Q 025599 241 SIS 243 (250)
Q Consensus 241 ~~~ 243 (250)
.+.
T Consensus 230 ~~~ 232 (233)
T 1u5t_A 230 TRQ 232 (233)
T ss_dssp GCC
T ss_pred hcc
Confidence 853
No 2
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=100.00 E-value=2e-88 Score=600.74 Aligned_cols=221 Identities=51% Similarity=0.877 Sum_probs=206.9
Q ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCCCCCCcccccccccccchhhhHHHH
Q 025599 24 GENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQI 103 (250)
Q Consensus 24 g~~l~~~~~~~l~~qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqI 103 (250)
|.+++++|+++|++||++||++|++||+||++||++||+||++|++||++||||||+++||||+++||+|||||||||||
T Consensus 1 g~~l~~~~~~~~~~Ql~~F~~~L~~FA~kH~~eI~~dp~fR~~F~~mc~siGVDPlas~kg~ws~~lG~gdfy~eLavqI 80 (234)
T 3cuq_A 1 GTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQI 80 (234)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTCCTTSCTTSHHHHHHCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHHcCCCcccCCcchhhhhcCcchHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcccCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEECCEEEEEecCCccchhHHHHH
Q 025599 104 VEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQIL 183 (250)
Q Consensus 104 vevC~~tr~~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~g~~vi~ig~~~~v~svp~El~~D~~~vL 183 (250)
||||++||++|||||+|+||+|+|+|+||...+.||||||+|||++|++||+||+|+++||++||||||.|||+||++||
T Consensus 81 vEvC~~tr~~nGGli~L~el~~~~~r~Rg~~~~~IS~dDi~rAik~L~~LG~g~~v~~~~g~~~VqSvp~el~~D~~~vL 160 (234)
T 3cuq_A 81 IEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVL 160 (234)
T ss_dssp HHHHHHHHHHHSSEEEHHHHHHHHHHTTTTCCSSCCHHHHHHHHHHHGGGBTTCEEEEETTEEEEECSCCCCCHHHHHHH
T ss_pred HHHHHHHHHhcCCeeEHHHHHHHHHHhcCCccCccCHHHHHHHHHHHHhcCCCeEEEEECCEEEEEeCCCccchHHHHHH
Confidence 99999999999999999999999999999766899999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCCCCCCcceeecCccCCCcc
Q 025599 184 ELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWFPCASSISSS 245 (250)
Q Consensus 184 ela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw~P~l~~~~~~ 245 (250)
++|+..||||+++|++++||++.||+++|++|+++|++|||+|.+ +|+.|||||+|.+...
T Consensus 161 ela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~GllwvD~q~~-ge~~Yw~P~lf~~~~~ 221 (234)
T 3cuq_A 161 QLAEKNGYVTVSEIKASLKWETERARQVLEHLLKEGLAWLDLQAP-GEAHYWLPALFTDLYS 221 (234)
T ss_dssp HHHTTTSEECHHHHHHHHTCCHHHHHHHHHHHHHHTSCEEESSSS-SSCEEECTTSSCCCCC
T ss_pred HHHHhcCcCcHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEeCCCC-Ccceeecchhhccccc
Confidence 999999999999999999999999999999999999999999985 5999999999986443
No 3
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=100.00 E-value=3.2e-57 Score=398.17 Aligned_cols=200 Identities=16% Similarity=0.224 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHHH------HHHHHHHhcccccccChhHHHHHHHHHHHcCCC-CCCCCCcccccccccccchhhhHHHH
Q 025599 31 RTDLMKEQLATFRS------QLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVD-PLASNKGFWAELLGIGDFYYELGVQI 103 (250)
Q Consensus 31 ~~~~l~~qL~~F~~------~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVD-PL~s~k~~ws~~lG~gdfy~eLavqI 103 (250)
-+++|++.|...++ ++....++.+++|++|++- +|++||++|||| |+++ ++||+ .+||||||||||
T Consensus 9 af~DL~~LM~~Ak~mv~la~~~~~~~~~~~~~~~~~e~~--~f~~m~~slGvd~Pl~~-~~~~s----~~~f~~ELa~qi 81 (218)
T 3cuq_B 9 AFEDLSKLMIKAKEMVELSKSIANKIKDKQGDITEDETI--RFKSYLLSMGIANPVTR-ETYGS----GTQYHMQLAKQL 81 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGCC----------CCSH--HHHHHHHHHTCCCHHHH-TTSSC----SCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHH--HHHHHHHHcCCCCcchh-hccCc----ccHHHHHHHHHH
Confidence 36667777766663 3333444445566677764 699999999999 7775 69998 799999999999
Q ss_pred HHHhhhhcccCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEEC-CEEEEEecCCccchhHHHH
Q 025599 104 VEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVG-KKKLVRSVPTELNKDHNQI 182 (250)
Q Consensus 104 vevC~~tr~~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~g~~vi~ig-~~~~v~svp~El~~D~~~v 182 (250)
+|||.++++.|||||+|.||+|++||+|| .++|||+||++||++|++||.||++++++ |+++|||+|.+++.||++|
T Consensus 82 ~e~c~~~~~~~GG~I~L~dl~~~~nraRG--~~lVSp~Dl~~A~~~l~~Lg~~~~l~~~~sg~~vvqs~~~~~~~~~~~i 159 (218)
T 3cuq_B 82 AGILQVPLEERGGIMSLTEVYCLVNRARG--MELLSPEDLVNACKMLEALKLPLRLRVFDSGVMVIELQSHKEEEMVASA 159 (218)
T ss_dssp HHHHHHHHHHTTSEEEHHHHHHHHHHTCS--SSCCCHHHHHHHHHTTTTTTCSEEEEECTTSBEEEEETTCCGGGGHHHH
T ss_pred HHHHHHHHHhCCCeEEHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHcCCCEEEEEECCCcEEEEcCCCchHHHHHHH
Confidence 99999999999999999999999999998 48999999999999999999999999998 8999999999999999999
Q ss_pred HHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCCCCCCcceeecCccCC
Q 025599 183 LELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWFPCASSI 242 (250)
Q Consensus 183 Lela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw~P~l~~~ 242 (250)
+++++..||||+++|++++||+..||+++|+.++++|++|||++. |+.|||||+|.+
T Consensus 160 l~~~~~~g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l~~D~~~---eg~~y~pn~f~~ 216 (218)
T 3cuq_B 160 LETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRDDSV---EGLRFYPNLFMT 216 (218)
T ss_dssp HHHHHHTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEESS---SCEEEEECGGGC
T ss_pred HHHHHHCCCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEECCC---CceEEehhhccc
Confidence 999999999999999999999999999999999999999999976 789999999985
No 4
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=100.00 E-value=3.3e-44 Score=350.87 Aligned_cols=221 Identities=17% Similarity=0.168 Sum_probs=141.8
Q ss_pred CCcchhhhhccHHHHHHHHhhcHhHHHHHHHHHHHHHHHHH------HHHHHHHHhcccccccChh--HHHHHHHHHHHc
Q 025599 3 RRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFR------SQLEDFARKHKNDIRKNPT--FRSQFHEMCAKV 74 (250)
Q Consensus 3 R~~Gi~ai~~~~~~~~~~~~~g~~l~~~~~~~l~~qL~~F~------~~L~~Fa~~h~~eI~~dp~--fR~~F~~mC~si 74 (250)
+++||+||+|+.+++.+-++...+-+ |++|++.|+..+ +.+...+++.+++|..|.+ =..+|+.++
T Consensus 321 ~~~GI~gler~~e~~~~~~~~~i~~A---f~DL~~LM~~AkemV~La~~~~~~~~~~~~~~s~~~~~~e~~~~~s~L--- 394 (566)
T 1w7p_D 321 SRIGISSLEKSRENQLLNNDILFNNA---LTDLNKLMSLATSIERLYKNSNITMKTKTLNLQDESTVNEPKTRRPLL--- 394 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccchhhHhhHhhc---
Confidence 56899999999998888877766555 667777777766 4444555555566654422 112566665
Q ss_pred CCCCCCCCCcccccccc-cccchhhhHHHHHHHhhhhc----cc-CCCceeHHHHHHHHHhh-cCCCCCCCCHHHHHHHH
Q 025599 75 GVDPLASNKGFWAELLG-IGDFYYELGVQIVEICLATR----PH-NGGLINLQELCNLLRQR-RKSNREAVSEDDCLRAI 147 (250)
Q Consensus 75 GVDPL~s~k~~ws~~lG-~gdfy~eLavqIvevC~~tr----~~-nGGli~l~el~~~v~k~-R~~~~~~IS~~DI~rAi 147 (250)
|+. + +++| .++||||||+||+|||.+++ ++ |||||+|.||++++||+ |+. .++|||+||++||
T Consensus 395 ---~Vt-r-----d~~~s~~~f~~ELA~qI~E~c~~~~~~~l~~~nGGmItL~DL~~~~NRa~R~g-~elISp~Dll~A~ 464 (566)
T 1w7p_D 395 ---ILD-R-----EKFLNKELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIG-TGLISPMEMREAC 464 (566)
T ss_dssp ----CC-S-----SCCCCHHHHHHHHHHHHHHHHHHTTCCSSCSCCCCEEEHHHHHHHHHHHTTTT-TCCCCHHHHHHHH
T ss_pred ---ccc-h-----hhcCChhHHHHHHHHHHHHHHHhhhcccchhcCcCeEEHHHHHHHHHHhccCC-CCccCHHHHHHHH
Confidence 554 4 3444 48999999999999999999 88 99999999999999999 952 5899999999999
Q ss_pred hhccccCCCeE-EEEECCEEEEEecCCccchhHHHHHHHHHhCCCccHHHHHHhcC-------CChHHHHHHHHHHHHcC
Q 025599 148 SKLKVLGNGYE-VISVGKKKLVRSVPTELNKDHNQILELAQAQGFVTVDEVERRLS-------WTSGRAIDALDILLEEG 219 (250)
Q Consensus 148 k~L~~LG~g~~-vi~ig~~~~v~svp~El~~D~~~vLela~~~g~vt~~~L~~~l~-------W~~~Ra~~~L~~l~~~G 219 (250)
++|++||.||. |++|++..+|+++|.+ +.|+++||++++..|+||+.+|++++| |+..||+++|+.++++|
T Consensus 465 ~~le~Lg~~~~~L~~~~sgvlVvs~~~~-~~~~~~il~l~~~~g~vT~~~la~~lg~~~~~~~Ws~~~A~e~L~~~e~eG 543 (566)
T 1w7p_D 465 ERFEHLGLNELKLVKVNKRILCVTSEKF-DVVKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEG 543 (566)
T ss_dssp TTGGGGTCTTCEEEECSSSCEEEESSCH-HHHHHHHHHHHTTSTTCCHHHHHHHHSCSSSCCCBCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCeEEEEEECCEEEEEcCCCc-hHHHHHHHHHHHhcCCcCHHHHHHHhCCccccCcccHHHHHHHHHHHHHcC
Confidence 99999999999 9999866677799988 999999999999999999999999999 99999999999999999
Q ss_pred CceeecCCCCCCcceeecCccCCC
Q 025599 220 LAMVDDGHRDRKRRYWFPCASSIS 243 (250)
Q Consensus 220 l~WvD~q~~~~e~~Yw~P~l~~~~ 243 (250)
++|||+|. ++.|||||+|...
T Consensus 544 ~l~rDd~~---~G~~yypNlf~~~ 564 (566)
T 1w7p_D 544 DLLIDKQL---SGIYYYKNSYWPS 564 (566)
T ss_dssp SEEEEEET---TEEEEEECCSSCC
T ss_pred CEEEECCC---CceEEehhhcccc
Confidence 99999998 6899999999753
No 5
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=100.00 E-value=1.4e-39 Score=276.15 Aligned_cols=143 Identities=20% Similarity=0.296 Sum_probs=128.0
Q ss_pred ccchhhhHHHHHHHhh---h-hcccCCC-ceeHHHHHHHHHhh-cCCCCCCCCHHHHHHHHhhccccCCC-eEEEEECCE
Q 025599 93 GDFYYELGVQIVEICL---A-TRPHNGG-LINLQELCNLLRQR-RKSNREAVSEDDCLRAISKLKVLGNG-YEVISVGKK 165 (250)
Q Consensus 93 gdfy~eLavqIvevC~---~-tr~~nGG-li~l~el~~~v~k~-R~~~~~~IS~~DI~rAik~L~~LG~g-~~vi~ig~~ 165 (250)
.+||||||+||+|+|. + +++.||| ||+|.||+|++||+ |+. .++|||+||++||++|++||.| |+++++++.
T Consensus 10 ~~f~~ELa~qi~e~c~~~~~~~~~~~GG~~I~L~dl~~~~nra~R~g-~~lISp~Dl~~A~~~l~~Lg~~~~~l~~~~sg 88 (169)
T 1u5t_B 10 ELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIG-TGLISPMEMREACERFEHLGLNELKLVKVNKR 88 (169)
T ss_dssp TTHHHHHHHHHHHHHHTTTTTSSSCCCCCCEETTHHHHHHHHTTTSS-SCCCCHHHHHHHHTTTGGGTCCSCEEEEETTT
T ss_pred hHHHHHHHHHHHHHHhhcchhhHHhcCceeEEHHHHHHHHHHhhcCC-CCccCHHHHHHHHHHHHhcCCCeEEEEEECCe
Confidence 7999999999999999 7 9999999 99999999999999 952 5899999999999999999999 999999954
Q ss_pred EEEEecCCccchhH--HHHHHHHHhC-CC----ccHH-H-HHHhcCCChHHHHHHHHHHHHcCCceeecCCCCCCcceee
Q 025599 166 KLVRSVPTELNKDH--NQILELAQAQ-GF----VTVD-E-VERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWF 236 (250)
Q Consensus 166 ~~v~svp~El~~D~--~~vLela~~~-g~----vt~~-~-L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw~ 236 (250)
.+|+ .+.+.|+ ++++++++.. |+ ||++ + +++++||+..||+++|+.++++|++|||+|. ++.+||
T Consensus 89 ~~V~---~~~~~d~~~~~il~~~~~~~g~d~~~vt~~~~~la~~~~ws~~~a~e~L~~~e~~G~l~~D~~~---~G~~y~ 162 (169)
T 1u5t_B 89 ILCV---TSEKFDVVKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEGDLLIDKQL---SGIYYY 162 (169)
T ss_dssp EEEE---ESSCSHHHHHHHHHHHHHSCSBCHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTSEEEEECS---SCEEEE
T ss_pred eEEE---eCCChhHHHHHHHHHHHhcCCCCcccccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEECCC---CcceEE
Confidence 4444 2334444 8999999974 99 9999 9 9999999999999999999999999999998 457777
Q ss_pred cCccCC
Q 025599 237 PCASSI 242 (250)
Q Consensus 237 P~l~~~ 242 (250)
||+|..
T Consensus 163 ~N~f~~ 168 (169)
T 1u5t_B 163 KNSYWP 168 (169)
T ss_dssp ECCSSC
T ss_pred eeecCc
Confidence 999874
No 6
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=96.05 E-value=0.012 Score=41.35 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=44.7
Q ss_pred CCccchhHHHHHHHHHh-CCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCCCCCCcceeec
Q 025599 172 PTELNKDHNQILELAQA-QGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWFP 237 (250)
Q Consensus 172 p~El~~D~~~vLela~~-~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw~P 237 (250)
|..++.-...||++... .+.+|.++|++.+|.++.-+...|..|.++|++-. . ..-||.+
T Consensus 5 ~~~m~~~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~---~---~~G~y~l 65 (67)
T 2heo_A 5 LSTGDNLEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS---P---SPKYWSI 65 (67)
T ss_dssp ----CHHHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE---E---ETTEEEE
T ss_pred cccccHHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec---C---CCceEee
Confidence 65666445568888765 46899999999999999999999999999999533 2 2347765
No 7
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=95.85 E-value=0.02 Score=41.55 Aligned_cols=59 Identities=19% Similarity=0.312 Sum_probs=48.3
Q ss_pred ccchhH-HHHHHHHHhCC---CccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCCCCCCcceee
Q 025599 174 ELNKDH-NQILELAQAQG---FVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWF 236 (250)
Q Consensus 174 El~~D~-~~vLela~~~g---~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw~ 236 (250)
.++.|. ..||++....| .+|+.+|++.+|-++.-+...|..|+++|++-.-.. .+-||+
T Consensus 10 ~~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~----~~~~W~ 72 (77)
T 1qgp_A 10 SIYQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAG----TPPLWK 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECS----SSCEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCC----CCCceE
Confidence 445554 67889888877 999999999999999999999999999999876532 345665
No 8
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=95.81 E-value=0.036 Score=39.74 Aligned_cols=58 Identities=24% Similarity=0.252 Sum_probs=47.9
Q ss_pred HHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCCCCCCcceeecC
Q 025599 180 NQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWFPC 238 (250)
Q Consensus 180 ~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw~P~ 238 (250)
..||++....|.+|+.+|++.+|.+..-+...|..|+++|++=.+... .+.+.||...
T Consensus 3 ~~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~~~~-~gr~~~y~l~ 60 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPLR-RGMATYWFLK 60 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEECCS-SSSSCEEEES
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeccC-CCCcEEEEEC
Confidence 457888877788999999999999999999999999999998765443 2356777754
No 9
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=95.74 E-value=0.03 Score=40.87 Aligned_cols=57 Identities=12% Similarity=0.147 Sum_probs=48.3
Q ss_pred HHHHHHHHHhC------CCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCCCCCCcceee
Q 025599 179 HNQILELAQAQ------GFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWF 236 (250)
Q Consensus 179 ~~~vLela~~~------g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw~ 236 (250)
+..||++++.. +.+|+.+|++.+|.|..-++.-|..|+++|++=++-... +-+-+|+
T Consensus 6 ~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~~ggr-~~~~~~~ 68 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKVNAGK-GVPGLWR 68 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESCSS-SSCCEEE
T ss_pred HHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecCCCC-CcHHHHH
Confidence 45688888754 889999999999999999999999999999999996443 3577776
No 10
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=95.72 E-value=0.018 Score=42.38 Aligned_cols=53 Identities=8% Similarity=0.027 Sum_probs=45.5
Q ss_pred CCccchhHHHHHHHHHhCCCccHHHHHHhcCCChH-HHHHHHHHHHHcCCceee
Q 025599 172 PTELNKDHNQILELAQAQGFVTVDEVERRLSWTSG-RAIDALDILLEEGLAMVD 224 (250)
Q Consensus 172 p~El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~-Ra~~~L~~l~~~Gl~WvD 224 (250)
|.++..=+.+||.+....|-.|+.+|++.+|.++. -++..|..|+++|++..-
T Consensus 6 ~~~~~~~~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~ 59 (79)
T 1xmk_A 6 SLDMAEIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQ 59 (79)
T ss_dssp SHHHHHHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred cccchhHHHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEec
Confidence 33444446779999999999999999999999999 889999999999999843
No 11
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=95.55 E-value=0.025 Score=41.38 Aligned_cols=44 Identities=18% Similarity=0.147 Sum_probs=41.2
Q ss_pred HHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 181 QILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 181 ~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
.|+++.+..|.+|+++|++.|+-|..-.+.-|+.|+++|++=+-
T Consensus 6 ~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 48899999999999999999999999999999999999998665
No 12
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=95.47 E-value=0.024 Score=39.79 Aligned_cols=42 Identities=26% Similarity=0.407 Sum_probs=34.9
Q ss_pred HHH-HHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCcee
Q 025599 182 ILE-LAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMV 223 (250)
Q Consensus 182 vLe-la~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~Wv 223 (250)
+|. +++..-..|+.+++..+||+.++|+.+|+.|..+|.+--
T Consensus 8 LLall~s~~QGMTaGEVAA~f~w~Le~ar~aLeqLf~~G~LRK 50 (68)
T 3i71_A 8 LLALLTSVRQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRK 50 (68)
T ss_dssp HHHHHHHCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHhccccHHHHHHHhCCcHHHHHHHHHHHHhcchhhh
Confidence 443 455555679999999999999999999999999998743
No 13
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=95.29 E-value=0.053 Score=39.86 Aligned_cols=54 Identities=19% Similarity=0.288 Sum_probs=45.4
Q ss_pred HHHHHHHHHhCC---CccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCCCCCCcceee
Q 025599 179 HNQILELAQAQG---FVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWF 236 (250)
Q Consensus 179 ~~~vLela~~~g---~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw~ 236 (250)
+..||++....| .+|+.+|++.+|-++.-++.+|..|.++|++..-.. .+-||+
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~----~~~~W~ 68 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAG----TPPLWK 68 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESS----SSCEEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCC----CCCeeE
Confidence 456888888878 999999999999999999999999999999986532 245665
No 14
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=95.26 E-value=0.03 Score=42.01 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=41.5
Q ss_pred HHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 181 QILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 181 ~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
.|+++.+..|.||+++|++.|+-|..-.+.-|+.|++.|++=+-
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 48999999999999999999999999999999999999998775
No 15
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=95.19 E-value=0.29 Score=42.57 Aligned_cols=110 Identities=12% Similarity=0.057 Sum_probs=86.9
Q ss_pred HHHHHHhhhhcccCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccc----cCCCeEEEEECCEEEEEecCC---
Q 025599 101 VQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKV----LGNGYEVISVGKKKLVRSVPT--- 173 (250)
Q Consensus 101 vqIvevC~~tr~~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~----LG~g~~vi~ig~~~~v~svp~--- 173 (250)
..+||..+=.- |-=+++.+|...+. +++++|..++..|+. -+.||+|+.+++.+-+++-|.
T Consensus 17 ~~~iEAlLf~a---~epvs~~~La~~l~---------~~~~~v~~~l~~L~~~y~~~~rGiel~~v~~gy~l~T~~e~~~ 84 (219)
T 2z99_A 17 KRVLEALLLVI---DTPVTADALAAATE---------QPVYRVAAKLQLMADELTGRDSGIDLRHTSEGWRMYTRARFAP 84 (219)
T ss_dssp HHHHHHHHHHC---SSCBCHHHHHHHHT---------SCHHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEEECGGGHH
T ss_pred HHHHHHHHHHc---CCCCCHHHHHHHHC---------cCHHHHHHHHHHHHHHHhhCCCCEEEEEECCEEEEEEcHHHHH
Confidence 45677666654 33388999877652 688999999999963 489999999999988888542
Q ss_pred ------------ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeec
Q 025599 174 ------------ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 174 ------------El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
.||.-...+|.++.-++-||-.+|.+..|-+. ..++..|+..|++-.-.
T Consensus 85 ~v~~~~~~~~~~~Ls~aaLEtLaiIAy~QPITR~eI~~irGv~~---~~~v~~Lle~gLI~e~G 145 (219)
T 2z99_A 85 YVEKLLLDGARTKLTRAALETLAVVAYRQPVTRARVSAVRGVNV---DAVMRTLLARGLITEVG 145 (219)
T ss_dssp HHHHHHHHHHSCCCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCC---HHHHHHHHHTTSEEEEE
T ss_pred HHHHHhcccccCccCHHHHHHHHHHHHcCCcCHHHHHHHHCCCH---HHHHHHHHHCCCEEEcc
Confidence 46655555787777779999999999999987 57899999999998764
No 16
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=95.18 E-value=0.077 Score=44.06 Aligned_cols=110 Identities=18% Similarity=0.245 Sum_probs=83.8
Q ss_pred HHHHHhhhhcccCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccc----cCCCeEEEEECCEEEEEecCC----
Q 025599 102 QIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKV----LGNGYEVISVGKKKLVRSVPT---- 173 (250)
Q Consensus 102 qIvevC~~tr~~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~----LG~g~~vi~ig~~~~v~svp~---- 173 (250)
.++|..+=.- |-=+++++|...+. ..+++++|..++..|+. -+.||+|+.++|.+-+++-|.
T Consensus 10 ~~iEAlLf~~---~~pvs~~~La~~~~-------~~~~~~~v~~~l~~L~~~y~~~~rg~~l~~v~~gy~l~t~~~~~~~ 79 (162)
T 1t6s_A 10 RSLEALIFSS---EEPVNLQTLSQITA-------HKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFLTEPEFADL 79 (162)
T ss_dssp HHHHHHHHHC---SSCBCHHHHHHHTT-------CCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETTEEEEEECGGGHHH
T ss_pred HHHHHHHHHc---CCCCCHHHHHHHhC-------cCCCHHHHHHHHHHHHHHhhhCCCCEEEEEECCEEEEEEcHHHHHH
Confidence 4566555543 33388888876653 23799999999999963 389999999999999998764
Q ss_pred -----------ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 174 -----------ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 174 -----------El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
.||.-...+|.++.-++-||-.+|.+..|-+ +..++..|+..|++-.-
T Consensus 80 v~~~~~~~~~~~LS~aaLEtLaiIay~qPiTR~eI~~irGv~---~~~~v~~L~e~glI~e~ 138 (162)
T 1t6s_A 80 VRQLLAPVIQRRLSRSMLEVLAVVAWHQPVTKGEIQQIRGAS---PDYSIDRLLARGLIEVR 138 (162)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHCSEEHHHHHHHHTCC---CCSHHHHHHHTTSEEEE
T ss_pred HHHHhcccccCccCHHHHHHHHHHHHcCCcCHHHHHHHHCCC---HHHHHHHHHHCCCEEEc
Confidence 2333334466666667899999999999988 77899999999999863
No 17
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=94.92 E-value=0.061 Score=38.38 Aligned_cols=63 Identities=14% Similarity=0.256 Sum_probs=52.3
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcC----CChHHHHHHHHHHHHcCCceeecCCCCCCcceeecCc
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLS----WTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWFPCA 239 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~----W~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw~P~l 239 (250)
.|+.-+..||.+....|.+|+.+|.+.++ |+..-....|+.|++.|++=+.... ...+|.|..
T Consensus 6 ~lt~~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~~g---r~~~y~~~~ 72 (82)
T 1p6r_A 6 QISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKEG---RVFVYTPNI 72 (82)
T ss_dssp CCCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEET---TEEEEEESC
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEecC---CEEEEEeec
Confidence 57778888999888788999999999885 9999999999999999999887532 455666653
No 18
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=94.66 E-value=0.11 Score=39.54 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=47.3
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
.|+..+..+|......|.+|..+|++.+++++.-+...|..|++.|++=+....
T Consensus 28 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~ 81 (142)
T 3bdd_A 28 GISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNP 81 (142)
T ss_dssp SSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCC
Confidence 456678888888877778999999999999999999999999999999887554
No 19
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=94.36 E-value=0.083 Score=40.64 Aligned_cols=53 Identities=25% Similarity=0.392 Sum_probs=47.0
Q ss_pred CCccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeec
Q 025599 172 PTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 172 p~El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
+..++.-+..||......| +|+.+|++.+|+++.-+...|+.|++.|++-+-.
T Consensus 33 ~~~lt~~~~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 33 EVALTNTQEHILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp SSCCCHHHHHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred ccCCCHHHHHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEecc
Confidence 4567888999999888888 9999999999999999999999999999997643
No 20
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=94.35 E-value=0.16 Score=38.57 Aligned_cols=54 Identities=19% Similarity=0.171 Sum_probs=46.9
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
.|+..+..+|......|.+|..+|++.+++++.-+-..|+.|++.|++=+....
T Consensus 31 ~lt~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~ 84 (138)
T 1jgs_A 31 DITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNP 84 (138)
T ss_dssp TSCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECT
T ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCc
Confidence 457778888888777678999999999999999999999999999999886443
No 21
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=94.35 E-value=0.13 Score=39.64 Aligned_cols=55 Identities=18% Similarity=0.209 Sum_probs=47.9
Q ss_pred CCccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecC
Q 025599 172 PTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDG 226 (250)
Q Consensus 172 p~El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q 226 (250)
|..|+..|-.||......|.+|+.+|++.+++++.-+-..|+.|++.|++-+...
T Consensus 26 ~~~lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~ 80 (145)
T 3g3z_A 26 QQDLNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEG 80 (145)
T ss_dssp TTTCCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred HcCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccC
Confidence 4456778888998887667799999999999999999999999999999987543
No 22
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=94.32 E-value=0.15 Score=39.00 Aligned_cols=54 Identities=17% Similarity=0.049 Sum_probs=46.7
Q ss_pred ccchhHHHHHHHH-HhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 174 ELNKDHNQILELA-QAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 174 El~~D~~~vLela-~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
.|+..+..||... ...|.+|+.+|++.+++++.-+...|+.|++.|++=+....
T Consensus 34 ~l~~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~ 88 (146)
T 2fbh_A 34 GLSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVA 88 (146)
T ss_dssp CCTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCB
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCC
Confidence 3566677788888 67788999999999999999999999999999999886543
No 23
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=94.20 E-value=0.13 Score=38.93 Aligned_cols=53 Identities=8% Similarity=0.244 Sum_probs=46.9
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecC
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDG 226 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q 226 (250)
.++..+..+|......|.+|+.+|++.+++++.-+...|..|++.|++=+...
T Consensus 30 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~ 82 (139)
T 3bja_A 30 DISYVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKN 82 (139)
T ss_dssp TCCHHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEEC
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccC
Confidence 46777888998888788899999999999999999999999999999977543
No 24
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=94.20 E-value=0.092 Score=39.90 Aligned_cols=54 Identities=17% Similarity=0.141 Sum_probs=47.5
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
.++..+..+|......|.+|+.+|++.+++++.-+...|+.|++.|++=+....
T Consensus 26 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~ 79 (138)
T 3bpv_A 26 NLTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDP 79 (138)
T ss_dssp TCCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCC
Confidence 457778889988887789999999999999999999999999999999885433
No 25
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=94.16 E-value=0.16 Score=39.19 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=47.4
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
.|+..+..||......|.+|+.+|++.+++++.-+...|+.|++.|++-+....
T Consensus 39 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 92 (150)
T 2rdp_A 39 PITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDE 92 (150)
T ss_dssp SSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCC
Confidence 567778888888777788999999999999999999999999999999886443
No 26
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=94.09 E-value=0.16 Score=38.81 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=47.3
Q ss_pred CccchhHHHHHHHHHhCC--CccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 173 TELNKDHNQILELAQAQG--FVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 173 ~El~~D~~~vLela~~~g--~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
..++..|..||......| .+|+.+|++.+++++.-+-..|+.|++.|++-+....
T Consensus 27 ~~lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~ 83 (139)
T 3eco_A 27 FDITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDA 83 (139)
T ss_dssp GTCCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred cCCCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCC
Confidence 356777888888877654 8999999999999999999999999999999887544
No 27
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=94.09 E-value=0.15 Score=39.16 Aligned_cols=55 Identities=15% Similarity=0.163 Sum_probs=47.2
Q ss_pred CccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 173 TELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 173 ~El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
..++..|..||......|.+|+.+|++.++.++.-+-..|+.|++.|++-+....
T Consensus 33 ~~lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~ 87 (143)
T 3oop_A 33 YDVTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREIST 87 (143)
T ss_dssp SSSCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC--
T ss_pred CCCCHHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCC
Confidence 3567778889988877789999999999999999999999999999999876443
No 28
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=94.07 E-value=0.23 Score=38.02 Aligned_cols=53 Identities=21% Similarity=0.152 Sum_probs=46.3
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
.++..+..||.... .|.+|+.+|++.+++++.-+...|..|++.|++=+....
T Consensus 34 ~l~~~~~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~ 86 (146)
T 2gxg_A 34 NLSYLDFLVLRATS-DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDR 86 (146)
T ss_dssp TCCHHHHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCCHHHHHHHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCC
Confidence 45667888888877 889999999999999999999999999999999776443
No 29
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=93.99 E-value=0.18 Score=38.63 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=47.3
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
.|+..+..+|......|.+|+.+|++.++.++.-+...|..|++.|++-+....
T Consensus 26 ~lt~~~~~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~ 79 (144)
T 1lj9_A 26 SLTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDA 79 (144)
T ss_dssp TCTTTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCCHHHHHHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCC
Confidence 456678888888877788999999999999999999999999999999886544
No 30
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=93.88 E-value=0.12 Score=39.84 Aligned_cols=56 Identities=11% Similarity=0.106 Sum_probs=47.7
Q ss_pred CCccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 172 PTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 172 p~El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
|..|+..|..||......|.+|..+|++.+++++.-+-..|+.|++.|++-+....
T Consensus 35 ~~~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 90 (148)
T 3nrv_A 35 KFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHS 90 (148)
T ss_dssp GGTCCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----
T ss_pred hcCCCHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCC
Confidence 34678889899998888889999999999999999999999999999999876443
No 31
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=93.74 E-value=0.14 Score=39.79 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=47.1
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
.|+..+..||.+....|.+|+.+|++.+++++.-+...|..|++.|++=+....
T Consensus 34 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~ 87 (155)
T 1s3j_A 34 GVTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNT 87 (155)
T ss_dssp TCCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCC
Confidence 456668888888877778999999999999999999999999999999887544
No 32
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=93.73 E-value=0.086 Score=40.01 Aligned_cols=63 Identities=13% Similarity=0.263 Sum_probs=51.9
Q ss_pred CccchhHHHHHHHHHhCCCccHHHHHHhcC----CChHHHHHHHHHHHHcCCceeecCCCCCCcceeecC
Q 025599 173 TELNKDHNQILELAQAQGFVTVDEVERRLS----WTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWFPC 238 (250)
Q Consensus 173 ~El~~D~~~vLela~~~g~vt~~~L~~~l~----W~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw~P~ 238 (250)
..|+.-+..||++.-..|.+|+.+|.+.++ |+..-....|+.|+++|++=+.... ....|+|.
T Consensus 31 ~~LT~~e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~~g---R~~~Y~p~ 97 (99)
T 2k4b_A 31 FNVSNAELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEKEG---RKFVYRPL 97 (99)
T ss_dssp CCCCCSCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEEET---TEEEEECC
T ss_pred CCCCHHHHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEeCC---CEEEEEEe
Confidence 356777777998887778899999999985 9999999999999999999887543 56666664
No 33
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=93.72 E-value=0.15 Score=37.86 Aligned_cols=53 Identities=19% Similarity=0.280 Sum_probs=43.9
Q ss_pred HHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCCCCCCcceee
Q 025599 179 HNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWF 236 (250)
Q Consensus 179 ~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw~ 236 (250)
-..||++....| +|+.+|++.+|.++.-++..|..|+++|++-.=... +-.|+
T Consensus 19 ~~~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~~~~----PP~W~ 71 (82)
T 1oyi_A 19 VCEAIKTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDDI----PPRWF 71 (82)
T ss_dssp HHHHHHHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECSSS----SCEEE
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCC----CCcce
Confidence 345778777778 999999999999999999999999999999775433 44555
No 34
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=93.66 E-value=0.21 Score=38.31 Aligned_cols=56 Identities=18% Similarity=0.099 Sum_probs=48.1
Q ss_pred CCccchhHHHHHHHHHh-CCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 172 PTELNKDHNQILELAQA-QGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 172 p~El~~D~~~vLela~~-~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
+..++..+..||..... .|.+|..+|++.+|+++.-+...|..|++.|++=+....
T Consensus 30 ~~~l~~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~ 86 (147)
T 2hr3_A 30 ADPVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADP 86 (147)
T ss_dssp CCHHHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC--
T ss_pred ccCCCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCC
Confidence 34678888889888877 889999999999999999999999999999999876443
No 35
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=93.64 E-value=0.22 Score=38.49 Aligned_cols=54 Identities=15% Similarity=0.046 Sum_probs=47.3
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
.++..+..||......|.+|+.+|++.+++++.-+...|..|++.|++=+....
T Consensus 37 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~ 90 (152)
T 3bj6_A 37 GVTVGQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNP 90 (152)
T ss_dssp TCCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCS
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCc
Confidence 356668888888887788999999999999999999999999999999886543
No 36
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=93.63 E-value=0.37 Score=37.21 Aligned_cols=107 Identities=13% Similarity=0.085 Sum_probs=77.3
Q ss_pred hhHHHHHHHhhhhcccCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEEC-CEEEEEecCCccc
Q 025599 98 ELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVG-KKKLVRSVPTELN 176 (250)
Q Consensus 98 eLavqIvevC~~tr~~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~g~~vi~ig-~~~~v~svp~El~ 176 (250)
.+..+|++.+.+ .| .+..|+...+ .++++.+.+.++.|...|. |+.+. +..+-... +.
T Consensus 7 ~l~~~i~~~~~~-----~p-~~~~~la~~~---------~~~~~~~~~~l~~l~~~G~---l~~i~~~~~~~~~~---~~ 65 (121)
T 2pjp_A 7 AIWQKAEPLFGD-----EP-WWVRDLAKET---------GTDEQAMRLTLRQAAQQGI---ITAIVKDRYYRNDR---IV 65 (121)
T ss_dssp HHHHHHGGGCSS-----SC-EEHHHHHHHT---------TCCHHHHHHHHHHHHHTTS---EEEEETTEEEEHHH---HH
T ss_pred HHHHHHHHHHHh-----CC-CCHHHHHHHh---------CCCHHHHHHHHHHHHHCCC---EEEecCCceECHHH---HH
Confidence 445556666533 33 4777776553 3789999999999988775 55564 44332222 22
Q ss_pred hhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeec
Q 025599 177 KDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 177 ~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
.=...+.++++..|.+|+.++++.+|-+.-.|...|+.|=+.|+.-+..
T Consensus 66 ~~~~~l~~~~~~~~~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~TrR~g 114 (121)
T 2pjp_A 66 EFANMIRDLDQECGSTCAADFRDRLGVGRKLAIQILEYFDRIGFTRRRG 114 (121)
T ss_dssp HHHHHHHHHHHHHSSEEHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEET
T ss_pred HHHHHHHHHHHHCCCccHHHHHHHHCCcHHHHHHHHHHHhhcCCeEeeC
Confidence 2234467777888999999999999999999999999999999988763
No 37
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=93.60 E-value=0.23 Score=38.96 Aligned_cols=54 Identities=17% Similarity=0.117 Sum_probs=46.9
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
.|+..+..||......|.+|..+|++.+++++.-+...|+.|++.|++-+....
T Consensus 49 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~ 102 (162)
T 3cjn_A 49 GLSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDS 102 (162)
T ss_dssp TCCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCC
Confidence 356668888888887788999999999999999999999999999999886433
No 38
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=93.52 E-value=0.23 Score=38.54 Aligned_cols=53 Identities=19% Similarity=0.173 Sum_probs=46.4
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecC
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDG 226 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q 226 (250)
.|+..+..||......|.+|+.+|++.+++++.-+...|..|++.|++-+...
T Consensus 44 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~ 96 (153)
T 2pex_A 44 DLTYPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRA 96 (153)
T ss_dssp TCCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-
T ss_pred CCCHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCC
Confidence 45777888888887778899999999999999999999999999999988643
No 39
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=93.52 E-value=0.16 Score=38.54 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=46.6
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecC
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDG 226 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q 226 (250)
.++..+..||......|.+|..+|++.+++++.-+...|+.|++.|++-+...
T Consensus 35 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~ 87 (140)
T 2nnn_A 35 GLTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSAD 87 (140)
T ss_dssp CCCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCC
Confidence 45777888888887777899999999999999999999999999999987543
No 40
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=93.40 E-value=0.15 Score=40.33 Aligned_cols=50 Identities=10% Similarity=0.121 Sum_probs=45.4
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCcee
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMV 223 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~Wv 223 (250)
+|+.-+..+|.+.+..|.+|..+|++.+|.+..-+...|..|++.|++..
T Consensus 5 ~ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 5 LIDNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp CCCHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred ccCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcce
Confidence 45665678999999889999999999999999999999999999999985
No 41
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=93.35 E-value=0.2 Score=36.24 Aligned_cols=52 Identities=23% Similarity=0.319 Sum_probs=45.3
Q ss_pred cchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecC
Q 025599 175 LNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDG 226 (250)
Q Consensus 175 l~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q 226 (250)
++.-+..||.+....|.+|+.+|++.+|.++.-+...|..|++.|++-....
T Consensus 18 l~~~~~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~ 69 (109)
T 1sfx_A 18 FKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIV 69 (109)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEee
Confidence 4556777888887668899999999999999999999999999999987644
No 42
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=93.28 E-value=0.24 Score=37.97 Aligned_cols=54 Identities=19% Similarity=0.193 Sum_probs=46.6
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
.++..+..||......|.+|..+|++.+++++.-+...|..|++.|++=+....
T Consensus 37 ~l~~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~ 90 (147)
T 1z91_A 37 NITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSE 90 (147)
T ss_dssp CCCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCS
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCC
Confidence 457778888888777778999999999999999999999999999999775443
No 43
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=93.28 E-value=0.14 Score=41.90 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=45.0
Q ss_pred CCccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCc
Q 025599 172 PTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLA 221 (250)
Q Consensus 172 p~El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~ 221 (250)
|.+|+.-+..+|.+.+..|.+|..+|++.+|.+..-+...|..|++.|++
T Consensus 12 ~~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I 61 (171)
T 2ia0_A 12 EIHLDDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGVI 61 (171)
T ss_dssp --CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSE
T ss_pred cCCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 56677777789999998899999999999999999999999999999998
No 44
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=93.28 E-value=0.17 Score=36.94 Aligned_cols=55 Identities=13% Similarity=0.165 Sum_probs=47.9
Q ss_pred CCccchhHHHHHHHHHhCCCccHHHH----HHhcCCChHHHHHHHHHHHHcCCceeecC
Q 025599 172 PTELNKDHNQILELAQAQGFVTVDEV----ERRLSWTSGRAIDALDILLEEGLAMVDDG 226 (250)
Q Consensus 172 p~El~~D~~~vLela~~~g~vt~~~L----~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q 226 (250)
+..|+..|..||......|.+|..+| ++.+++++.-+-..|+.|++.|++-+...
T Consensus 3 ~~~lt~~q~~iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~ 61 (99)
T 1tbx_A 3 STPFFYPEAIVLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQE 61 (99)
T ss_dssp CCSSBCHHHHHHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 34678888889988887788999999 89999999999999999999999987643
No 45
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=93.19 E-value=0.41 Score=36.30 Aligned_cols=53 Identities=17% Similarity=0.118 Sum_probs=45.5
Q ss_pred ccchhHHHHHHHHHhCC--CccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecC
Q 025599 174 ELNKDHNQILELAQAQG--FVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDG 226 (250)
Q Consensus 174 El~~D~~~vLela~~~g--~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q 226 (250)
.++..+..||.+....+ .+|+.+|++.+++++.-+...|+.|++.|++=+...
T Consensus 31 ~lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~ 85 (141)
T 3bro_A 31 DLTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVS 85 (141)
T ss_dssp TCCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCC
Confidence 45677888888777655 799999999999999999999999999999977543
No 46
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=93.18 E-value=0.19 Score=39.62 Aligned_cols=48 Identities=21% Similarity=0.248 Sum_probs=44.2
Q ss_pred cchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCce
Q 025599 175 LNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAM 222 (250)
Q Consensus 175 l~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~W 222 (250)
|+.-+..+|.+.+..|.+|..+|++.+|.+..-+...|..|+++|++.
T Consensus 7 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 7 LDRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 566567899988888999999999999999999999999999999998
No 47
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=93.10 E-value=0.44 Score=35.48 Aligned_cols=78 Identities=17% Similarity=0.192 Sum_probs=59.2
Q ss_pred CCCCHHHHHHHHhhccccCCCeEEEEECCEEEEEecCCccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHH
Q 025599 136 EAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDIL 215 (250)
Q Consensus 136 ~~IS~~DI~rAik~L~~LG~g~~vi~ig~~~~v~svp~El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l 215 (250)
..++++++....+.++.|+++. ...||.+.. .|..|+.+|++.+|.+..-+...|..|
T Consensus 6 ~~~~~~~~~~~~~~~~~l~~~~---------------------r~~IL~~L~-~~~~~~~ela~~l~is~stvs~~L~~L 63 (106)
T 1r1u_A 6 SEINTDTLERVTEIFKALGDYN---------------------RIRIMELLS-VSEASVGHISHQLNLSQSNVSHQLKLL 63 (106)
T ss_dssp ---CHHHHHHHHHHHHHTCSHH---------------------HHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHH---------------------HHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3578888888888888887422 345776666 467899999999999999999999999
Q ss_pred HHcCCceeecCCCCCCcceeecC
Q 025599 216 LEEGLAMVDDGHRDRKRRYWFPC 238 (250)
Q Consensus 216 ~~~Gl~WvD~q~~~~e~~Yw~P~ 238 (250)
+..|++-..... ...||..+
T Consensus 64 ~~~Glv~~~~~g---r~~~y~l~ 83 (106)
T 1r1u_A 64 KSVHLVKAKRQG---QSMIYSLD 83 (106)
T ss_dssp HHTTSEEEEEET---TEEEEEES
T ss_pred HHCCCeEEEEeC---CEEEEEEC
Confidence 999999877532 45566543
No 48
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=93.08 E-value=0.3 Score=35.15 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=45.5
Q ss_pred HHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCCCCCCcceee
Q 025599 179 HNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWF 236 (250)
Q Consensus 179 ~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw~ 236 (250)
+..||.+....|.+|..+|++.+|.+..-+...|..|++.|++-..... ...||.
T Consensus 26 ~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~---r~~~y~ 80 (99)
T 3cuo_A 26 RLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDA---QRILYS 80 (99)
T ss_dssp HHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECS---SCEEEE
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC---CEEEEE
Confidence 5568877777778999999999999999999999999999999877532 344544
No 49
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=92.99 E-value=0.15 Score=39.15 Aligned_cols=54 Identities=13% Similarity=0.186 Sum_probs=43.2
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
.|+.-|..||......|.+|+.+|++.+++++.-+-..|+.|++.|++-+....
T Consensus 34 ~lt~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~ 87 (142)
T 3ech_A 34 DLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNP 87 (142)
T ss_dssp CCCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC----
T ss_pred CCCHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCC
Confidence 567778889988888788999999999999999999999999999999886544
No 50
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=92.98 E-value=0.37 Score=37.99 Aligned_cols=54 Identities=17% Similarity=0.100 Sum_probs=47.8
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
.|+.-|..||......|.+|+.+|++.+++++.-+-..|+.|++.|++=+....
T Consensus 43 glt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 96 (162)
T 3k0l_A 43 EISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDP 96 (162)
T ss_dssp TCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECC
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCC
Confidence 467778889988887788999999999999999999999999999999876544
No 51
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=92.96 E-value=0.26 Score=37.08 Aligned_cols=77 Identities=22% Similarity=0.180 Sum_probs=60.0
Q ss_pred CCCCHHHHHHHHhhccccCCCeEEEEECCEEEEEecCCccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHH
Q 025599 136 EAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDIL 215 (250)
Q Consensus 136 ~~IS~~DI~rAik~L~~LG~g~~vi~ig~~~~v~svp~El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l 215 (250)
..++++++..+.+.++.|+.+. ...||.+... |.+|+.+|++.+|.++.-+...|..|
T Consensus 5 ~~~~~~~~~~~~~~~~al~~~~---------------------r~~IL~~L~~-~~~s~~eLa~~lgis~stvs~~L~~L 62 (108)
T 2kko_A 5 SDRKAALLDQVARVGKALANGR---------------------RLQILDLLAQ-GERAVEAIATATGMNLTTASANLQAL 62 (108)
T ss_dssp CCTHHHHHHHHHHHHHHHTTST---------------------THHHHHHHTT-CCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CccChhhHHHHHHHHHHhCCHH---------------------HHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4467778888888888888422 2347766654 78899999999999999999999999
Q ss_pred HHcCCceeecCCCCCCcceeec
Q 025599 216 LEEGLAMVDDGHRDRKRRYWFP 237 (250)
Q Consensus 216 ~~~Gl~WvD~q~~~~e~~Yw~P 237 (250)
++.|++-..... ...||..
T Consensus 63 ~~~GlV~~~~~g---r~~~y~l 81 (108)
T 2kko_A 63 KSGGLVEARREG---TRQYYRI 81 (108)
T ss_dssp HHHTSEEEEEET---TEEEEEE
T ss_pred HHCCCeEEEEeC---CEEEEEE
Confidence 999999877532 4556554
No 52
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=92.92 E-value=0.22 Score=38.79 Aligned_cols=52 Identities=12% Similarity=0.089 Sum_probs=46.0
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeec
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
.|+..|..||.+....|.+|+.+|++.+++++.-+...|+.|++.|++-+..
T Consensus 40 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~ 91 (155)
T 3cdh_A 40 GLRVPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVA 91 (155)
T ss_dssp TCCHHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CCCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 4566788888888777889999999999999999999999999999998753
No 53
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=92.86 E-value=0.3 Score=37.27 Aligned_cols=54 Identities=17% Similarity=0.171 Sum_probs=46.8
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
.++..+..||......|.+|+.+|++.++.++.-+...|..|++.|++=+....
T Consensus 34 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~ 87 (142)
T 2bv6_A 34 NLTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSE 87 (142)
T ss_dssp TCCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECS
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCC
Confidence 356667788888887788999999999999999999999999999999776543
No 54
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=92.83 E-value=0.28 Score=34.76 Aligned_cols=53 Identities=17% Similarity=0.242 Sum_probs=45.4
Q ss_pred cchhHHHHHHHHHh-C-CCccHHHHHHhc-----CCChHHHHHHHHHHHHcCCceeecCC
Q 025599 175 LNKDHNQILELAQA-Q-GFVTVDEVERRL-----SWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 175 l~~D~~~vLela~~-~-g~vt~~~L~~~l-----~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
++.-...||++... . +.+|+++|.+.+ +++..=+...|+.|++.|++-.....
T Consensus 15 ~t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~~ 74 (83)
T 2fu4_A 15 VTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFE 74 (83)
T ss_dssp CCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEECG
T ss_pred cCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEeeC
Confidence 35556778988875 3 799999999999 99999999999999999999887654
No 55
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=92.82 E-value=0.35 Score=38.52 Aligned_cols=54 Identities=11% Similarity=0.057 Sum_probs=47.1
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
.|+.-+..||......|.+|+.+|++.+++++.-+-..|+.|++.|++=+....
T Consensus 42 ~lt~~~~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~ 95 (168)
T 2nyx_A 42 NITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHP 95 (168)
T ss_dssp SCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCC
Confidence 567778888888877788999999999999999999999999999999875433
No 56
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=92.72 E-value=0.22 Score=39.87 Aligned_cols=50 Identities=24% Similarity=0.363 Sum_probs=45.5
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCcee
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMV 223 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~Wv 223 (250)
+|+.-+..+|.+.+..|.+|..+|++.+|.+..-+...|..|++.|++-.
T Consensus 7 ~ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 56 (162)
T 2p5v_A 7 TLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEee
Confidence 56766778999999889999999999999999999999999999999863
No 57
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=92.71 E-value=0.37 Score=37.29 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=44.3
Q ss_pred cchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCcee
Q 025599 175 LNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMV 223 (250)
Q Consensus 175 l~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~Wv 223 (250)
|+.-|..||......|.+|+.+|++.+++++.-+-..|+.|++.|++-+
T Consensus 39 lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 39 LTIQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 4666777888887778899999999999999999999999999999988
No 58
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=92.67 E-value=0.22 Score=39.22 Aligned_cols=49 Identities=14% Similarity=0.212 Sum_probs=43.9
Q ss_pred cchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCcee
Q 025599 175 LNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMV 223 (250)
Q Consensus 175 l~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~Wv 223 (250)
|+.-+..+|++.+..|.+|..+|++.+|.+..-+...|..|++.|++-.
T Consensus 3 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 3 LDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQ 51 (144)
T ss_dssp CCHHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 4555667999888889999999999999999999999999999999863
No 59
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=92.66 E-value=0.26 Score=38.64 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=46.6
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
.|+.-|..||......|.+|+.+|++.+++++.-+-..|+.|++.|++=+....
T Consensus 47 ~lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 100 (159)
T 3s2w_A 47 GIGSGQFPFLMRLYREDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDE 100 (159)
T ss_dssp TCCTTTHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCC
Confidence 455567778888877788999999999999999999999999999999876443
No 60
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=92.63 E-value=0.26 Score=38.56 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=44.5
Q ss_pred cchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeec
Q 025599 175 LNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 175 l~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
|+..+..||......|.+|..+|++.+++++.-+...|+.|++.|++=+..
T Consensus 47 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 47 MAIPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp CCHHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeec
Confidence 466677888888878899999999999999999999999999999998753
No 61
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=92.56 E-value=0.33 Score=35.41 Aligned_cols=55 Identities=20% Similarity=0.235 Sum_probs=45.1
Q ss_pred HHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCCCCCCcceeec
Q 025599 179 HNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWFP 237 (250)
Q Consensus 179 ~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw~P 237 (250)
...||.+... |.+|+.+|++.+|.+..-+...|..|++.|++-..... ...||..
T Consensus 25 r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g---~~~~y~l 79 (98)
T 3jth_A 25 RLQILCMLHN-QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEA---QTVYYTL 79 (98)
T ss_dssp HHHHHHHTTT-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCT---TCCEEEE
T ss_pred HHHHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC---CEEEEEE
Confidence 3457776666 89999999999999999999999999999999887554 4555543
No 62
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=92.54 E-value=0.23 Score=39.30 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=45.0
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCcee
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMV 223 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~Wv 223 (250)
+|+.-+..+|.+.+..|.+|..+|++.+|.+..-+...|..|++.|++-.
T Consensus 4 ~ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 4 PLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKK 53 (151)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCC
T ss_pred CcCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 46666778999999889999999999999999999999999999999853
No 63
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=92.53 E-value=0.2 Score=38.62 Aligned_cols=54 Identities=13% Similarity=0.145 Sum_probs=46.9
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
.|+.-|..||......|.+|+.+|++.+++++.-+-..|+.|++.|++-+....
T Consensus 33 glt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~ 86 (140)
T 3hsr_A 33 DLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREE 86 (140)
T ss_dssp TCCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC--
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCC
Confidence 467778888888877789999999999999999999999999999999887544
No 64
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=92.53 E-value=0.33 Score=37.49 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=43.6
Q ss_pred ccchhHHHHHHHHHhC-CC-ccHHHHHHhcCCChHHHHHHHHHHHHcCCceeec
Q 025599 174 ELNKDHNQILELAQAQ-GF-VTVDEVERRLSWTSGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 174 El~~D~~~vLela~~~-g~-vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
.|+.-+..||.+.... |. +|+.+|++.+++++.-+...|+.|++.|++-+..
T Consensus 23 gLt~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 23 NLTKADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp TCCHHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeC
Confidence 4566677788776643 43 9999999999999999999999999999998864
No 65
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=92.44 E-value=0.46 Score=36.15 Aligned_cols=61 Identities=18% Similarity=0.235 Sum_probs=47.7
Q ss_pred cchhHHHHHHHHH-hCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCCCCCCcceee
Q 025599 175 LNKDHNQILELAQ-AQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWF 236 (250)
Q Consensus 175 l~~D~~~vLela~-~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw~ 236 (250)
++.-+..+|.+.. ..|.+|+.+|++.+|.++.-+-..|..|++.|++-+....++ .+.|+.
T Consensus 24 l~~~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~d-~r~~~~ 85 (152)
T 1ku9_A 24 LNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGE-RKNYYE 85 (152)
T ss_dssp CCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTC-SSCEEE
T ss_pred CChhHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCC-ceEEEe
Confidence 4555777877765 357899999999999999999999999999999988753322 344544
No 66
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=92.36 E-value=0.26 Score=37.43 Aligned_cols=53 Identities=11% Similarity=0.143 Sum_probs=45.9
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecC
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDG 226 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q 226 (250)
.|+..+..||......|.+|..+|++.+++++.-+...|+.|++.|++=+...
T Consensus 33 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~ 85 (142)
T 2fbi_A 33 GLTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKA 85 (142)
T ss_dssp TCCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecC
Confidence 35666778888877767899999999999999999999999999999987643
No 67
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=92.27 E-value=0.65 Score=34.94 Aligned_cols=82 Identities=15% Similarity=0.199 Sum_probs=63.3
Q ss_pred CCCCCCCCHHHHHHHHhhccccCCCeEEEEECCEEEEEecCCccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHH
Q 025599 132 KSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDA 211 (250)
Q Consensus 132 ~~~~~~IS~~DI~rAik~L~~LG~g~~vi~ig~~~~v~svp~El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~ 211 (250)
++....++++++.+..+.++.|+. ..+..+|.+... |..|..+|++.+|.+..-+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~l~~---------------------~~~~~il~~L~~-~~~s~~ela~~l~is~stvsr~ 65 (119)
T 2lkp_A 8 NRPSAPLDSQAAAQVASTLQALAT---------------------PSRLMILTQLRN-GPLPVTDLAEAIGMEQSAVSHQ 65 (119)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHHCC---------------------HHHHHHHHHHHH-CCCCHHHHHHHHSSCHHHHHHH
T ss_pred CccccccCHHHHHHHHHHHHHhCC---------------------HHHHHHHHHHHH-CCCCHHHHHHHHCcCHHHHHHH
Confidence 333456788888888888888764 235667776666 7899999999999999999999
Q ss_pred HHHHHHcCCceeecCCCCCCcceeecC
Q 025599 212 LDILLEEGLAMVDDGHRDRKRRYWFPC 238 (250)
Q Consensus 212 L~~l~~~Gl~WvD~q~~~~e~~Yw~P~ 238 (250)
|..|++.|++-.+... ...||.+.
T Consensus 66 l~~Le~~Glv~~~~~~---r~~~~~~~ 89 (119)
T 2lkp_A 66 LRVLRNLGLVVGDRAG---RSIVYSLY 89 (119)
T ss_dssp HHHHHHHCSEEEEEET---TEEEEEES
T ss_pred HHHHHHCCCEEEEecC---CEEEEEEc
Confidence 9999999999887533 45555544
No 68
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=92.19 E-value=0.26 Score=38.29 Aligned_cols=54 Identities=13% Similarity=0.144 Sum_probs=45.7
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
.|+..|-.||......|.+|+.+|++.+++++.-+-..|+.|++.|++=+....
T Consensus 38 ~lt~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~ 91 (149)
T 4hbl_A 38 GITYSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQ 91 (149)
T ss_dssp TCCHHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC----
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCC
Confidence 467778889988887789999999999999999999999999999999876433
No 69
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=92.14 E-value=0.24 Score=38.42 Aligned_cols=48 Identities=17% Similarity=0.311 Sum_probs=42.4
Q ss_pred cchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCce
Q 025599 175 LNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAM 222 (250)
Q Consensus 175 l~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~W 222 (250)
|+.-+..+|.+.+..|.+|..+|++.+|.+..-+...|..|+++|++-
T Consensus 2 ld~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 49 (141)
T 1i1g_A 2 IDERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIE 49 (141)
T ss_dssp CCSHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEe
Confidence 344466788888888899999999999999999999999999999984
No 70
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=92.10 E-value=0.27 Score=37.50 Aligned_cols=53 Identities=13% Similarity=0.083 Sum_probs=46.6
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecC
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDG 226 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q 226 (250)
.|+..+..||......|.+|..+|++.+++++.-+...|..|++.|++=+...
T Consensus 30 ~l~~~~~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~ 82 (145)
T 2a61_A 30 GITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPD 82 (145)
T ss_dssp TCCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCC
Confidence 45667888888887778899999999999999999999999999999988643
No 71
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=91.91 E-value=0.3 Score=38.52 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=43.8
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCce
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAM 222 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~W 222 (250)
+|+.-+..+|.+.+..|.+|..+|++.+|.+..-+...|..|++.|++-
T Consensus 4 ~ld~~~~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 52 (150)
T 2w25_A 4 ALDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQ 52 (150)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred ccCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3555566789888888999999999999999999999999999999995
No 72
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=91.88 E-value=0.39 Score=36.26 Aligned_cols=62 Identities=6% Similarity=0.111 Sum_probs=51.7
Q ss_pred CccchhHHHHHHHHHhCCCccHHHHHHhcC----CChHHHHHHHHHHHHcCCceeecCCCCCCcceeec
Q 025599 173 TELNKDHNQILELAQAQGFVTVDEVERRLS----WTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWFP 237 (250)
Q Consensus 173 ~El~~D~~~vLela~~~g~vt~~~L~~~l~----W~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw~P 237 (250)
..|+.-|..||.+.-..|.+|+.+|.+.++ |+..-....|+.|++.|++-+.... ....++|
T Consensus 6 ~~Lt~~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~~~---r~~~~~~ 71 (126)
T 1sd4_A 6 VEISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSE---NIYFYSS 71 (126)
T ss_dssp CCCCHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEET---TEEEEEE
T ss_pred CCCCHHHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEeCC---CeEEEEE
Confidence 467888989999888788899999999985 9999999999999999999987532 3444555
No 73
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=91.83 E-value=0.43 Score=37.51 Aligned_cols=54 Identities=22% Similarity=0.227 Sum_probs=46.0
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
.|+.-|..||......|.+|+.+|++.+++++.-+-..|+.|++.|++-+....
T Consensus 50 glt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~ 103 (161)
T 3e6m_A 50 KLPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISD 103 (161)
T ss_dssp TCCHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC--
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCc
Confidence 356668888888877788999999999999999999999999999999876443
No 74
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=91.79 E-value=0.51 Score=36.07 Aligned_cols=55 Identities=11% Similarity=0.157 Sum_probs=47.3
Q ss_pred CCccchhHHHHHHHHHhC--CCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecC
Q 025599 172 PTELNKDHNQILELAQAQ--GFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDG 226 (250)
Q Consensus 172 p~El~~D~~~vLela~~~--g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q 226 (250)
+..|+..|..||...... +.+|+.+|++.++.++.-+-..|+.|++.|++-+...
T Consensus 32 ~~~lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~ 88 (127)
T 2frh_A 32 EFSISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRN 88 (127)
T ss_dssp TTCCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCC
T ss_pred HcCCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCC
Confidence 345677788888887765 8899999999999999999999999999999988533
No 75
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=91.74 E-value=0.44 Score=38.03 Aligned_cols=54 Identities=17% Similarity=0.149 Sum_probs=45.3
Q ss_pred ccchhHHHHHHHHHh-CCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 174 ELNKDHNQILELAQA-QGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 174 El~~D~~~vLela~~-~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
.|+..|..||..... .+.+|+.+|++.+++++.-+-..|+.|++.|++-+....
T Consensus 50 glt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~ 104 (166)
T 3deu_A 50 ELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCA 104 (166)
T ss_dssp TCCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC---
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCC
Confidence 456678888887775 678999999999999999999999999999999886443
No 76
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=91.71 E-value=0.35 Score=36.10 Aligned_cols=51 Identities=8% Similarity=0.023 Sum_probs=46.9
Q ss_pred CCccchhHHHHHHHHHh--CCCccHHHHHHhcCCChHHHHHHHHHHHHcCCce
Q 025599 172 PTELNKDHNQILELAQA--QGFVTVDEVERRLSWTSGRAIDALDILLEEGLAM 222 (250)
Q Consensus 172 p~El~~D~~~vLela~~--~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~W 222 (250)
+..|+.+|..||.++.. ...+|..+|++.++-+..-....|+.|++.|++=
T Consensus 15 ~~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIk 67 (91)
T 2dk5_A 15 MKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIK 67 (91)
T ss_dssp CCCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred hcCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 56789999999999987 3489999999999999999999999999999998
No 77
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=91.70 E-value=0.84 Score=35.19 Aligned_cols=77 Identities=13% Similarity=0.146 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHhhccccCCCeEEEEECCEEEEEecCCccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHH
Q 025599 137 AVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILL 216 (250)
Q Consensus 137 ~IS~~DI~rAik~L~~LG~g~~vi~ig~~~~v~svp~El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~ 216 (250)
..+++++....+.++.|+.+ -...||.+... |..|+.+|++.+|.+..-....|..|+
T Consensus 27 ~~~~~~~~~~~~~~kaL~~~---------------------~rl~IL~~L~~-~~~s~~ela~~lgis~stvs~~L~~Le 84 (122)
T 1r1t_A 27 AIAPEVAQSLAEFFAVLADP---------------------NRLRLLSLLAR-SELCVGDLAQAIGVSESAVSHQLRSLR 84 (122)
T ss_dssp CCCHHHHHHHHHHHHHHCCH---------------------HHHHHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHhCCH---------------------HHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46788888888888888742 13457766654 678999999999999999999999999
Q ss_pred HcCCceeecCCCCCCcceeecC
Q 025599 217 EEGLAMVDDGHRDRKRRYWFPC 238 (250)
Q Consensus 217 ~~Gl~WvD~q~~~~e~~Yw~P~ 238 (250)
+.|++-..... ...||.++
T Consensus 85 ~~Glv~~~~~g---r~~~y~l~ 103 (122)
T 1r1t_A 85 NLRLVSYRKQG---RHVYYQLQ 103 (122)
T ss_dssp HTTSEEEEEET---TEEEEEES
T ss_pred HCCCeEEEEeC---CEEEEEEC
Confidence 99999987543 45566543
No 78
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=91.67 E-value=0.54 Score=36.70 Aligned_cols=62 Identities=16% Similarity=0.195 Sum_probs=51.0
Q ss_pred ccchhHHHHHHHHHh-CCCccHHHHHHhcC----CChHHHHHHHHHHHHcCCceeecCCCCCCcceeecC
Q 025599 174 ELNKDHNQILELAQA-QGFVTVDEVERRLS----WTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWFPC 238 (250)
Q Consensus 174 El~~D~~~vLela~~-~g~vt~~~L~~~l~----W~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw~P~ 238 (250)
.|+.-|..||.+.-. .|.+|+.+|.+.++ |+..-....|+.|++.|++=+.... ...+++|.
T Consensus 6 ~lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~~~---r~~~~~~~ 72 (138)
T 2g9w_A 6 RLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIRDD---RAHRYAPV 72 (138)
T ss_dssp GCCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC------CCEEEES
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEecC---CeEEEEeC
Confidence 577888889998887 58999999999997 9999999999999999999987532 45555553
No 79
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=91.59 E-value=0.29 Score=39.50 Aligned_cols=46 Identities=13% Similarity=0.273 Sum_probs=42.2
Q ss_pred hHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCcee
Q 025599 178 DHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMV 223 (250)
Q Consensus 178 D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~Wv 223 (250)
-..++|.+.+..|.+|..+|++.+|.|..-+...|..|+++|++..
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~ 49 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRR 49 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeee
Confidence 3457899999899999999999999999999999999999999883
No 80
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=91.33 E-value=0.78 Score=35.65 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=46.4
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecC
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDG 226 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q 226 (250)
.|+.-|..||......|.+|+.+|++.+++++.-+-..|+.|++.|++=+...
T Consensus 41 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~ 93 (154)
T 2eth_A 41 DMKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMD 93 (154)
T ss_dssp HSBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCC
Confidence 46777888888887777899999999999999999999999999999977543
No 81
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=91.14 E-value=0.34 Score=37.78 Aligned_cols=54 Identities=11% Similarity=0.180 Sum_probs=45.2
Q ss_pred ccchhHHHHHHHH-HhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 174 ELNKDHNQILELA-QAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 174 El~~D~~~vLela-~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
.|+..|..||.+. ...|.+|..+|++.+++++.-+-..|..|++.|++=+....
T Consensus 44 ~l~~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~ 98 (160)
T 3boq_A 44 GLSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSA 98 (160)
T ss_dssp SCCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC---
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCC
Confidence 3566788888888 56778999999999999999999999999999999886433
No 82
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=91.10 E-value=0.28 Score=38.09 Aligned_cols=49 Identities=12% Similarity=0.251 Sum_probs=44.6
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCcee
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMV 223 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~Wv 223 (250)
.++.-|-.||... ..|.+|+.+|++.+++++.-+-..|+.|++.|++-+
T Consensus 35 ~lt~~q~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r 83 (151)
T 3kp7_A 35 GISAEQSHVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKL 83 (151)
T ss_dssp TCCHHHHHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC
T ss_pred CCCHHHHHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 4566688888888 778999999999999999999999999999999997
No 83
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=90.97 E-value=0.4 Score=39.23 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=45.4
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCcee
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMV 223 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~Wv 223 (250)
+|+.-+..+|.+.+..|.+|..+|++.+|.+..-+...|..|++.|++-.
T Consensus 24 ~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~ 73 (171)
T 2e1c_A 24 PLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKK 73 (171)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCC
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEe
Confidence 56766778999999889999999999999999999999999999999853
No 84
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=90.94 E-value=0.25 Score=37.22 Aligned_cols=53 Identities=8% Similarity=0.295 Sum_probs=47.0
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcC----CChHHHHHHHHHHHHcCCceeecC
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLS----WTSGRAIDALDILLEEGLAMVDDG 226 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~----W~~~Ra~~~L~~l~~~Gl~WvD~q 226 (250)
.|+.-+..||.+....|.+|+.+|.+.++ |++.-+...|+.|++.|++-+...
T Consensus 7 ~lt~~~~~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~ 63 (123)
T 1okr_A 7 EISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKD 63 (123)
T ss_dssp CCCHHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred cCCHHHHHHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEec
Confidence 57778888998887678899999999998 999999999999999999987643
No 85
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=90.88 E-value=0.38 Score=37.80 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCcee
Q 025599 177 KDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMV 223 (250)
Q Consensus 177 ~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~Wv 223 (250)
.-+..+|.+.+..|.+|..+|++.+|.+..-+...|..|++.|++-.
T Consensus 3 ~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 3 EIDLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHHHHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCC
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 34567888888888999999999999999999999999999999864
No 86
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=90.43 E-value=0.75 Score=34.19 Aligned_cols=45 Identities=18% Similarity=0.247 Sum_probs=38.0
Q ss_pred HHHHHHHH-hCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 180 NQILELAQ-AQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 180 ~~vLela~-~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
..|+.... .+..+|+.+|++.+|-+..-+..+|..|..+|++-..
T Consensus 21 l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 21 IDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 34665543 4437999999999999999999999999999999877
No 87
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=90.38 E-value=0.73 Score=35.33 Aligned_cols=57 Identities=16% Similarity=0.081 Sum_probs=44.2
Q ss_pred HHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCCCCCCcceeecC
Q 025599 179 HNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWFPC 238 (250)
Q Consensus 179 ~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw~P~ 238 (250)
...||.+....|..|+.+|++.+|.+..-+...|..|+..|++-..... ...||.++
T Consensus 44 rl~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~g---r~~~y~l~ 100 (122)
T 1u2w_A 44 RAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEG---KLALYSLG 100 (122)
T ss_dssp HHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-------CCEEEES
T ss_pred HHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEC---CEEEEEEC
Confidence 3457777765678999999999999999999999999999999886443 45566543
No 88
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=90.38 E-value=3.8 Score=35.55 Aligned_cols=113 Identities=12% Similarity=0.086 Sum_probs=80.1
Q ss_pred cccchhhhHHHHHHHhhhhcccCCCcee--HHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEEC-CEEEE
Q 025599 92 IGDFYYELGVQIVEICLATRPHNGGLIN--LQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVG-KKKLV 168 (250)
Q Consensus 92 ~gdfy~eLavqIvevC~~tr~~nGGli~--l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~g~~vi~ig-~~~~v 168 (250)
..+-+-.+..+|.+.+.+ +|+-+ +.|+...+ .+.++++...++.|...|. |+.|. +..|-
T Consensus 135 ~~~~~~~~~~~i~~~~~~-----~g~~pp~~~dl~~~l---------~~~~~~~~~~l~~l~~~g~---lv~l~~~~~~~ 197 (258)
T 1lva_A 135 FSETQKKLLKDLEDKYRV-----SRWQPPSFKEVAGSF---------NLDPSELEELLHYLVREGV---LVKINDEFYWH 197 (258)
T ss_dssp CCHHHHHHHHHHHHHHHH-----HTTSCCBHHHHHHHT---------TCCHHHHHHHHHHHHHTTS---EEESSSSBEEE
T ss_pred CCHHHHHHHHHHHHHHHH-----CCCCCCCHHHHHhHh---------CCCHHHHHHHHHHHHHCCC---EEEecCCeEEc
Confidence 345556666666666633 56543 45554332 3678888888888887775 66776 44443
Q ss_pred EecCCccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeec
Q 025599 169 RSVPTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 169 ~svp~El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
.....++ -..+.+++ ..|.+|+.++++.+|-|.-.|..-|+.|=+.|+.-+..
T Consensus 198 ~~~~~~~---~~~l~~~~-~~~~it~a~~Rd~lg~SRK~aIplLE~~Dr~g~TrR~g 250 (258)
T 1lva_A 198 RQALGEA---REVIKNLA-STGPFGLAEARDALGSSRKYVLPLLEYLDQVKFTRRVG 250 (258)
T ss_dssp HHHHHHH---HHHHHHHH-TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHH---HHHHHHHH-hcCCcCHHHHHHHhCCcHHHHHHHHHHHhhcCceeeeC
Confidence 3332222 44466777 78999999999999999999999999999999998874
No 89
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=90.37 E-value=0.78 Score=37.41 Aligned_cols=53 Identities=11% Similarity=0.075 Sum_probs=46.5
Q ss_pred cchhHHHHHHHHHh--CCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 175 LNKDHNQILELAQA--QGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 175 l~~D~~~vLela~~--~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
|+.-|-.||..... .|.+|+.+|++.+++++.-+-..|..|++.|++-+....
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~ 93 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSP 93 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCC
Confidence 67778888887764 678999999999999999999999999999999886544
No 90
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=90.33 E-value=0.26 Score=38.14 Aligned_cols=52 Identities=10% Similarity=0.097 Sum_probs=38.7
Q ss_pred ccchhHHHHHHHHHhC--CCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeec
Q 025599 174 ELNKDHNQILELAQAQ--GFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 174 El~~D~~~vLela~~~--g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
.|+.-|..||...... |.+|+.+|++.+++++.-+-..|+.|++.|++=+..
T Consensus 38 glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 91 (148)
T 3jw4_A 38 GLNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRI 91 (148)
T ss_dssp TCCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC-
T ss_pred CCCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeC
Confidence 4566788888877654 889999999999999999999999999999997654
No 91
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=90.30 E-value=0.52 Score=36.10 Aligned_cols=53 Identities=19% Similarity=0.094 Sum_probs=45.5
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
.|+..|..||......|. |+.+|++.+++++.-+-..|+.|++.|++-+....
T Consensus 34 ~lt~~~~~iL~~l~~~~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 86 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEPR-SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDS 86 (144)
T ss_dssp SCCHHHHHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCCHHHHHHHHHHHHCCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCC
Confidence 456678888888877666 99999999999999999999999999999876433
No 92
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=90.23 E-value=0.44 Score=36.87 Aligned_cols=49 Identities=20% Similarity=0.220 Sum_probs=43.0
Q ss_pred cchhHHHHHHHHHhCCCccHHHHHHhc--CCChHHHHHHHHHHHHcCCcee
Q 025599 175 LNKDHNQILELAQAQGFVTVDEVERRL--SWTSGRAIDALDILLEEGLAMV 223 (250)
Q Consensus 175 l~~D~~~vLela~~~g~vt~~~L~~~l--~W~~~Ra~~~L~~l~~~Gl~Wv 223 (250)
++.-...||++....|..|+.+|++.+ |.+..-+...|..|++.|++=.
T Consensus 11 md~~d~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~ 61 (111)
T 3b73_A 11 MTIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQP 61 (111)
T ss_dssp CCHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEe
Confidence 444346799998877899999999999 9999999999999999999865
No 93
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=90.17 E-value=0.84 Score=32.67 Aligned_cols=46 Identities=15% Similarity=0.207 Sum_probs=39.5
Q ss_pred HHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 179 HNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 179 ~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
+..||.+....|.+|..+|++.+|.+..-....|..|++.|++-..
T Consensus 18 ~~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~ 63 (100)
T 1ub9_A 18 RLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTY 63 (100)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 4457776655578999999999999999999999999999999853
No 94
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=89.96 E-value=0.41 Score=34.60 Aligned_cols=54 Identities=15% Similarity=0.262 Sum_probs=43.8
Q ss_pred CccchhHHHHH-HHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecC
Q 025599 173 TELNKDHNQIL-ELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDG 226 (250)
Q Consensus 173 ~El~~D~~~vL-ela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q 226 (250)
..++..+..+| .+....+.+|+.+|++.+|.++.-+...|..|++.|++-....
T Consensus 17 ~~l~~~~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~ 71 (109)
T 2d1h_A 17 YKITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKT 71 (109)
T ss_dssp HTCCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred hcCCHHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeecc
Confidence 34555565555 4454478899999999999999999999999999999988754
No 95
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=89.94 E-value=0.84 Score=33.71 Aligned_cols=47 Identities=17% Similarity=0.102 Sum_probs=40.3
Q ss_pred HHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecC
Q 025599 179 HNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDG 226 (250)
Q Consensus 179 ~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q 226 (250)
+..||.+. ..|.+|+.+|++.+|+++.-....|..|++.|++-....
T Consensus 23 r~~IL~~L-~~~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 23 RWEILTEL-GRADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp HHHHHHHH-HHSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec
Confidence 45577777 456799999999999999999999999999999987643
No 96
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=89.79 E-value=0.66 Score=32.23 Aligned_cols=43 Identities=19% Similarity=0.407 Sum_probs=38.5
Q ss_pred HHHHHHH-hCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCcee
Q 025599 181 QILELAQ-AQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMV 223 (250)
Q Consensus 181 ~vLela~-~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~Wv 223 (250)
.+|+.+. .+|++.++..++++|-+++-...+|..|.++|++=+
T Consensus 14 ~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 14 ELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCeec
Confidence 3777666 689999999999999999999999999999999754
No 97
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=89.48 E-value=0.52 Score=39.06 Aligned_cols=52 Identities=23% Similarity=0.316 Sum_probs=44.3
Q ss_pred ccchhHHHHHHHHH----hCC-CccHHHHHHhcCCChHHHHHHHHHHHHcCCceeec
Q 025599 174 ELNKDHNQILELAQ----AQG-FVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 174 El~~D~~~vLela~----~~g-~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
+|+.-|..+|+++. ..| ..|..+|++.+|.+..-+...|..|+++|++=++.
T Consensus 2 ~lt~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~~ 58 (196)
T 3k2z_A 2 DLTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEKKGYIERKN 58 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC-
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEecC
Confidence 57888999998865 346 48999999999999998999999999999997764
No 98
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=89.44 E-value=2.8 Score=31.99 Aligned_cols=93 Identities=19% Similarity=0.480 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCCCCCCcccccccccccchhhhHHHHHHHhhhhcccCCC
Q 025599 37 EQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGG 116 (250)
Q Consensus 37 ~qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~nGG 116 (250)
.|++.|+.....|=.++.+.|..++ |..++.++|.+|... .+..+....-..+.|
T Consensus 7 eqi~el~~~F~~~D~d~~G~I~~~E-----l~~~l~~~~~~~~~~--------------------~~~~~~~~~d~~~~g 61 (148)
T 2lmt_A 7 EQIAEFKDAFVQFDKEGTGKIATRE-----LGTLMRTLGQNPTEA--------------------ELQDLIAEAENNNNG 61 (148)
T ss_dssp HHHHHHHHHHHHHHCSSCCEEEGGG-----HHHHHHHHTCCCCHH--------------------HHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHcCCCCCeECHHH-----HHHHHHhcCCCchHH--------------------HHHHHHHhcccCCCC
Confidence 3566778888888899999998774 668888899887431 122233333345567
Q ss_pred ceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCe
Q 025599 117 LINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGY 157 (250)
Q Consensus 117 li~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~g~ 157 (250)
.++..|....+..... ...+++++.+|.+.+-.=|+|+
T Consensus 62 ~i~~~ef~~~~~~~~~---~~~~~~~l~~aF~~~D~d~~G~ 99 (148)
T 2lmt_A 62 QLNFTEFCGIMAKQMR---ETDTEEEMREAFKIFDRDGDGF 99 (148)
T ss_dssp EEEHHHHHHHHHHTTT---TTTTHHHHHHHHHHHHSSCSSE
T ss_pred cccHHHHHHHHHHHhc---ccCcHHHHHHHHHHHCCCCcCc
Confidence 7888887766655322 3456677777776666555554
No 99
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=89.41 E-value=0.47 Score=37.56 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=44.6
Q ss_pred CCccchhHHHHHHHHHh--CCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 172 PTELNKDHNQILELAQA--QGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 172 p~El~~D~~~vLela~~--~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
+..|+.-|..||.+... .+.+|+.+|++.+++++.-+-..|+.|++.|++-+....
T Consensus 41 ~~glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 98 (168)
T 3u2r_A 41 QFELSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKP 98 (168)
T ss_dssp TTTCCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEET
T ss_pred hcCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCC
Confidence 34567778888887775 468999999999999999999999999999999876443
No 100
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=89.28 E-value=1.6 Score=31.74 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=41.0
Q ss_pred hHHHHHHHHH---hCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 178 DHNQILELAQ---AQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 178 D~~~vLela~---~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
.+..|+.++. ..+++|+.+|+..||-++--+..+|-.|.++|.+..=...
T Consensus 13 ~~~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~~~~ 65 (75)
T 1sfu_A 13 IFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPSN 65 (75)
T ss_dssp HHHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCS
T ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecCCCC
Confidence 4555555555 2556999999999999999999999999999999877555
No 101
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=89.16 E-value=0.46 Score=36.17 Aligned_cols=109 Identities=14% Similarity=0.196 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCCCCC-Cccc---ccccccccchhhhH---------HHHH
Q 025599 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASN-KGFW---AELLGIGDFYYELG---------VQIV 104 (250)
Q Consensus 38 qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL~s~-k~~w---s~~lG~gdfy~eLa---------vqIv 104 (250)
++..++.....|-..+.+.|..+ .|+.++.++|.+|-... ..++ +..+...+|..-+. ..+.
T Consensus 14 ~~~~l~~~F~~~D~d~~G~i~~~-----el~~~l~~~g~~~~~~~~~~~~~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~ 88 (153)
T 2ovk_B 14 QMQELKEAFTMIDQDRDGFIGME-----DLKDMFSSLGRVPPDDELNAMLKECPGQLNFTAFLTLFGEKVSGTDPEDALR 88 (153)
T ss_dssp HHHHHHHHHHHHCCSTTTCCCHH-----HHHHHTTTTTSCCCHHHHHHHHHHSSSCCCSHHHHHTTTTTTTTCCCTTHHH
T ss_pred HHHHHHHHHHHhCCCCCCeECHH-----HHHHHHHHhCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHH
Confidence 44555566666666677777654 57778888888653210 0000 11122223322221 1233
Q ss_pred HHhhhhcccCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCC
Q 025599 105 EICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNG 156 (250)
Q Consensus 105 evC~~tr~~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~g 156 (250)
++...-=..+-|.|+..|+...+... ...+|++++...++.+.+ |.|
T Consensus 89 ~~F~~~D~d~~G~I~~~el~~~l~~~----g~~~~~~~~~~~~~~~d~-~dg 135 (153)
T 2ovk_B 89 NAFSMFDEDGQGFIPEDYLKDLLENM----GDNFSKEEIKNVWKDAPL-KNK 135 (153)
T ss_dssp HHHHTTCSSCSSCCCHHHHHHHHHHS----SSCCCHHHHHHHHHHCCE-ETT
T ss_pred HHHHHHCCCCCCeEcHHHHHHHHHHc----CCCCCHHHHHHHHHHcCC-CCC
Confidence 33333333445777777777776653 245777777777777766 655
No 102
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=89.05 E-value=1.5 Score=32.12 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=43.6
Q ss_pred HHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCCCCCCcceeec
Q 025599 180 NQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWFP 237 (250)
Q Consensus 180 ~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw~P 237 (250)
..||.+... |.+|+.+|++.+|.+..-....|..|...|++-..... ...||..
T Consensus 26 ~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g---~~~~y~l 79 (102)
T 3pqk_A 26 LMLVCTLVE-GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNI---KQIFYRL 79 (102)
T ss_dssp HHHHHHHHT-CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSS---SCCEEEE
T ss_pred HHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC---CEEEEEE
Confidence 346666644 67999999999999999999999999999999887644 4556654
No 103
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=88.84 E-value=0.9 Score=37.93 Aligned_cols=54 Identities=19% Similarity=0.154 Sum_probs=46.6
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
.|+.-|-.||.+....|.+|+.+|++.+++++.-+-..|+.|++.|++=+....
T Consensus 45 gLt~~q~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~ 98 (207)
T 2fxa_A 45 DLNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRL 98 (207)
T ss_dssp TCCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC-
T ss_pred CCCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCC
Confidence 456668888888877688999999999999999999999999999999887544
No 104
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=88.23 E-value=0.69 Score=40.29 Aligned_cols=53 Identities=11% Similarity=0.168 Sum_probs=48.4
Q ss_pred CCccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 172 PTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 172 p~El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
|..|+..+..+|+.....|.+|..+|++.+|.++.-+...|..|++.|++-.+
T Consensus 147 ~~~L~~~~~~IL~~L~~~~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~ 199 (244)
T 2wte_A 147 MRDYSREEMKLLNVLYETKGTGITELAKMLDKSEKTLINKIAELKKFGILTQK 199 (244)
T ss_dssp HSCCCHHHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 45788889999998766678999999999999999999999999999999987
No 105
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=88.10 E-value=4.7 Score=31.66 Aligned_cols=94 Identities=13% Similarity=0.287 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHH--hcccccccChhHHHHHHHHHHHcCCCCCCCCCcccccccccccchhhhHHHHHHHhhhhcccC
Q 025599 37 EQLATFRSQLEDFAR--KHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHN 114 (250)
Q Consensus 37 ~qL~~F~~~L~~Fa~--~h~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~n 114 (250)
.|++.||.....|=. .+.+.|..+ .|+.++.++|++|-.. + |-++ ...-..+
T Consensus 6 eqi~elre~F~~fD~~~d~dG~I~~~-----El~~~lr~lG~~~t~~------e--------------l~~~-~~~d~~~ 59 (159)
T 3i5g_C 6 DEIEEVREVFDLFDFWDGRDGDVDAA-----KVGDLLRCLGMNPTEA------Q--------------VHQH-GGTKKMG 59 (159)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCEEGG-----GHHHHHHHTTCCCCHH------H--------------HHTT-TCCSSTT
T ss_pred HHHHHHHHHHHHHCcCCCCCCeECHH-----HHHHHHHHcCCCCCHH------H--------------HHHH-HcccccC
Confidence 456667777777754 456778765 4668888999987420 1 1111 1223345
Q ss_pred CCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCe
Q 025599 115 GGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGY 157 (250)
Q Consensus 115 GGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~g~ 157 (250)
.|-|++.|.+..+.+.... ...-++++|.+|.+.+-+=|+|+
T Consensus 60 ~g~i~f~eFl~~~~~~~~~-~~~~~~~~l~~aF~~fD~d~~G~ 101 (159)
T 3i5g_C 60 EKAYKLEEILPIYEEMSSK-DTGTAADEFMEAFKTFDREGQGL 101 (159)
T ss_dssp SCEECHHHHHHHHHHHTTC-CTTCCHHHHHHHHHHHCTTSSSE
T ss_pred CCcccHHHHHHHHHHhhcc-cccchHHHHHHHHHHHhcCCCCc
Confidence 6788888888777664332 23456788888888877766665
No 106
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=87.86 E-value=0.83 Score=37.74 Aligned_cols=54 Identities=24% Similarity=0.229 Sum_probs=46.4
Q ss_pred HHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCCCCCCcceeec
Q 025599 180 NQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWFP 237 (250)
Q Consensus 180 ~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw~P 237 (250)
..|||+.. .|.+|+..|++.+|-|-..|+-.|-.|++||++=-=... ...||--
T Consensus 14 ~~ILE~Lk-~G~~~t~~Iak~LGlShg~aq~~Ly~LeREG~V~~Vk~G---K~ayw~L 67 (165)
T 2vxz_A 14 RDILALLA-DGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVTRVAFG---NVALVCL 67 (165)
T ss_dssp HHHHHHHT-TCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEEET---TEEEEES
T ss_pred HHHHHHHH-hCCccHHHHHHHhCCcHHHHHHHHHHHHhcCceEEEEEc---cEEEEEe
Confidence 45788888 899999999999999999999999999999998655443 6788864
No 107
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=87.43 E-value=0.47 Score=46.46 Aligned_cols=109 Identities=12% Similarity=0.145 Sum_probs=28.5
Q ss_pred ceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccc--cC-CCeEEEEECCEEEEEec----CC-------------ccc
Q 025599 117 LINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKV--LG-NGYEVISVGKKKLVRSV----PT-------------ELN 176 (250)
Q Consensus 117 li~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~--LG-~g~~vi~ig~~~~v~sv----p~-------------El~ 176 (250)
-|+.+++...++ +|+.++.++++.|.. ++ .|+ |...|+.++|..- .. .++
T Consensus 444 ~it~~~la~~l~---------~s~~~~~~~L~~L~~~~~~~~gl-ie~~g~~y~L~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (583)
T 3lmm_A 444 FITIDVVARGLQ---------SGKEAARNALEAARQTTVAGAPL-IIAHDGVWLLGNACREILRKVEPSPFSPVRYLSTD 513 (583)
T ss_dssp SBCHHHHHHHHT---------SCHHHHHHHHHHHHTCEETTEES-EEEETTEEEECHHHHHHHTSCC-------------
T ss_pred CcCHHHHHHHhC---------cCHHHHHHHHHHHHhhhccccce-EEEeCCEEEECHHHHHHhcccccccccccccccCC
Confidence 466666655543 799999999999975 33 444 3445665544331 00 011
Q ss_pred hh--HHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCCCCCCcceeecC
Q 025599 177 KD--HNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWFPC 238 (250)
Q Consensus 177 ~D--~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw~P~ 238 (250)
.+ ...|++++...|.+|..++++.+|-+...|+..|..|+++|++=. .+.|...+|.+.
T Consensus 514 ~~~~~~~I~~~l~~~g~it~~di~~l~~ls~~qa~~~L~~Lv~~G~l~~---~G~gr~t~Y~~~ 574 (583)
T 3lmm_A 514 QAELTNAAMLWLSEVGDLATSDLMAMCGVSRGTAKACVDGLVDEERVVA---VGGGRSRRYRLV 574 (583)
T ss_dssp ----------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEE---eCCCCceEEEEe
Confidence 11 235788888899999999999999999999999999999999622 222345555543
No 108
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=87.40 E-value=1.6 Score=32.06 Aligned_cols=61 Identities=11% Similarity=0.064 Sum_probs=51.3
Q ss_pred CCccchhHHHHHHHHHh-CCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCCCCCCcceeecC
Q 025599 172 PTELNKDHNQILELAQA-QGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWFPC 238 (250)
Q Consensus 172 p~El~~D~~~vLela~~-~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw~P~ 238 (250)
|..++.-..+||++..+ ..-++..+|++.+|-++--.-.+|..|-++|.+- .| .+.||-|.
T Consensus 14 ~~~~~d~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~----SP--kRCyw~~~ 75 (80)
T 2lnb_A 14 PGREGHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVS----LT--SPATWCLG 75 (80)
T ss_dssp SCHHHHHHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----EE--ETTEEEES
T ss_pred CcccchHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCcc----CC--CCceeeCC
Confidence 55566557789999885 5679999999999999999999999999999953 22 68999986
No 109
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=87.27 E-value=0.84 Score=35.21 Aligned_cols=53 Identities=21% Similarity=0.179 Sum_probs=43.2
Q ss_pred ccchhHHHHHHHHH-hCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecC
Q 025599 174 ELNKDHNQILELAQ-AQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDG 226 (250)
Q Consensus 174 El~~D~~~vLela~-~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q 226 (250)
.|+.-|..||.+.. ..+.+|+.+|++.+++++.-+-..|+.|++.|++-+...
T Consensus 36 glt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~ 89 (150)
T 3fm5_A 36 GLRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLD 89 (150)
T ss_dssp TCCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC---
T ss_pred CCCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCC
Confidence 45666888888765 445789999999999999999999999999999987543
No 110
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=86.40 E-value=0.98 Score=34.77 Aligned_cols=43 Identities=14% Similarity=0.298 Sum_probs=37.4
Q ss_pred HHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 182 ILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 182 vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
++.+....|.+|+.+|++.+|.++.-+...|..|++.|++=+.
T Consensus 13 i~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~ 55 (142)
T 1on2_A 13 IYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYE 55 (142)
T ss_dssp HHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe
Confidence 3444555678999999999999999999999999999999776
No 111
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=86.29 E-value=5.5 Score=29.87 Aligned_cols=36 Identities=6% Similarity=0.063 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCC
Q 025599 39 LATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (250)
Q Consensus 39 L~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL 79 (250)
+..++.....|-..+.+.|..+ .|..++..+|+.|.
T Consensus 22 ~~~l~~~F~~~D~~~~G~i~~~-----e~~~~l~~~~~~~~ 57 (161)
T 3fwb_A 22 KQEIYEAFSLFDMNNDGFLDYH-----ELKVAMKALGFELP 57 (161)
T ss_dssp HHHHHHHHHHHCTTSSSEECHH-----HHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHCCCCCCcCcHH-----HHHHHHHHcCCCCC
Confidence 3445555556666777777655 46777778887653
No 112
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=85.88 E-value=1.3 Score=33.83 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=41.9
Q ss_pred ccchhHHHHHHHH----HhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeec
Q 025599 174 ELNKDHNQILELA----QAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 174 El~~D~~~vLela----~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
.++.-+..+|... +..+.+|..+|++.+|+++.-+...|..|+++|++-++.
T Consensus 10 ~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 10 NLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred hcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEecC
Confidence 4555565565543 346789999999999999999999999999999988764
No 113
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=85.71 E-value=1.9 Score=32.68 Aligned_cols=51 Identities=22% Similarity=0.317 Sum_probs=45.5
Q ss_pred CCccchhHHHHHHHHHhCCCccHHHHHH-hcCCChHHHHHHHHHHHHcCCce
Q 025599 172 PTELNKDHNQILELAQAQGFVTVDEVER-RLSWTSGRAIDALDILLEEGLAM 222 (250)
Q Consensus 172 p~El~~D~~~vLela~~~g~vt~~~L~~-~l~W~~~Ra~~~L~~l~~~Gl~W 222 (250)
+..|+.-|..+|-.....|++|+.+|.+ .++.++.-.-..|.-|+++|++=
T Consensus 11 ~~~L~~~QfsiL~~L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe 62 (95)
T 1bja_A 11 NDVLNEKTATILITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLIKKGLVE 62 (95)
T ss_dssp TTSSCHHHHHHHHHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEE
T ss_pred hcCCCHHHHHHHHHHHHCCCCCHHHHHHHHhcccHHHHHHHHHHHHHCCCee
Confidence 4567888888998888889999999999 99999998899999999999875
No 114
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=85.64 E-value=1.4 Score=31.79 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=38.2
Q ss_pred HHHHHHhCC-CccHHHHHHhcCCChHH-HHHHHHHHHHcCCceeecCC
Q 025599 182 ILELAQAQG-FVTVDEVERRLSWTSGR-AIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 182 vLela~~~g-~vt~~~L~~~l~W~~~R-a~~~L~~l~~~Gl~WvD~q~ 227 (250)
+|.+....| .+|+.+|++.++.++.- +-..|+.|++.|++-.|...
T Consensus 20 ~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~~~~~d 67 (95)
T 2pg4_A 20 TLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVKEETLS 67 (95)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEEEEEEE
T ss_pred HHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCeecCCCC
Confidence 444455555 79999999999999999 99999999999999855443
No 115
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=85.60 E-value=1.4 Score=32.04 Aligned_cols=45 Identities=16% Similarity=0.046 Sum_probs=39.9
Q ss_pred HHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeec
Q 025599 179 HNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 179 ~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
...||++. .|.+|+.+|++.+|.+..-+...|..|++.|++-...
T Consensus 33 r~~Il~~L--~~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~ 77 (96)
T 1y0u_A 33 RRKILRML--DKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG 77 (96)
T ss_dssp HHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC
Confidence 45688877 4779999999999999999999999999999998764
No 116
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=85.32 E-value=1.2 Score=35.31 Aligned_cols=51 Identities=16% Similarity=0.341 Sum_probs=41.7
Q ss_pred ccchhHHHHHH-HHH----hCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 174 ELNKDHNQILE-LAQ----AQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 174 El~~D~~~vLe-la~----~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
.||.++..+|- +.. ...+.|.++|++.+|.+..-+...|+.|+++|++=+.
T Consensus 29 gLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 29 GLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 45666665543 333 2578999999999999999999999999999999994
No 117
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=84.78 E-value=1.9 Score=33.60 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=45.5
Q ss_pred ccchhHHHHHHHHH--hCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 174 ELNKDHNQILELAQ--AQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 174 El~~D~~~vLela~--~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
.|+.-|-.+|.+.. ..|.+|+++|++.++.++.-.-..++.|++.|++=+-...
T Consensus 32 gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~ 87 (147)
T 4b8x_A 32 GLTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNP 87 (147)
T ss_dssp TCCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecC
Confidence 35666777887664 4678999999999999999999999999999999876544
No 118
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=84.74 E-value=2.2 Score=33.42 Aligned_cols=105 Identities=14% Similarity=0.211 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCCCCC-Ccccccc---cccccchhhhHH---------HH
Q 025599 37 EQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASN-KGFWAEL---LGIGDFYYELGV---------QI 103 (250)
Q Consensus 37 ~qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL~s~-k~~ws~~---lG~gdfy~eLav---------qI 103 (250)
.|+..|+.....|=.++.+.|..+ .|+..+.++|.+|.... ..+.... +...+|...++. .+
T Consensus 13 ~qi~elk~~F~~~D~d~dG~I~~~-----El~~~l~~lg~~~~~~~~~~~~~~~~~~i~f~ef~~~~~~~~~~~~~~~~l 87 (153)
T 3i5g_B 13 RQMQELKEAFTMIDQDRDGFIGME-----DLKDMFSSLGRVPPDDELNAMLKECPGQLNFTAFLTLFGEKVSGTDPEDAL 87 (153)
T ss_dssp HHHHHHHHHHHHHCCSTTSCCCHH-----HHHHHHHHTTSCCCHHHHHHHHHTSSSCCCSHHHHHTTTTTTTTCCCHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCeEcHH-----HHHHHHHHcCCCccHHHHHHHHHhccCCccHHHHHHHHHhhhcccccHHHH
Confidence 456667777888888888888865 47788889999886311 0011111 111233222211 22
Q ss_pred HHHhhhhcccCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhc
Q 025599 104 VEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKL 150 (250)
Q Consensus 104 vevC~~tr~~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L 150 (250)
.++-..-=..+-|.|+..||...+... +..+|+++|..-++..
T Consensus 88 ~~aF~~fD~d~~G~I~~~el~~~l~~~----g~~ls~~ei~~~~~~~ 130 (153)
T 3i5g_B 88 RNAFSMFDEDGQGFIPEDYLKDLLENM----GDNFSKEEIKNVWKDA 130 (153)
T ss_dssp HHHHHTTCSSCSSCCCHHHHHHHHHSS----SSCCCHHHHHHHHTTC
T ss_pred HHHHhccccCCCCeEeHHHHHHHHHHc----CCcCCHHHHHHHHHHh
Confidence 222222222334677777776655432 2456777766655543
No 119
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=84.69 E-value=3.4 Score=32.40 Aligned_cols=54 Identities=19% Similarity=0.147 Sum_probs=44.7
Q ss_pred ccchhHHHHHHHHH-hCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 174 ELNKDHNQILELAQ-AQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 174 El~~D~~~vLela~-~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
.|+.-|-.||.... ..+.+|+.+|++.++.++.-+-..++.|++.|++=+....
T Consensus 28 gLt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~ 82 (151)
T 4aik_A 28 ELTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSA 82 (151)
T ss_dssp CCCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCC
Confidence 45666777777665 4667899999999999999999999999999999876544
No 120
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.67 E-value=1.2 Score=33.69 Aligned_cols=50 Identities=8% Similarity=0.033 Sum_probs=44.8
Q ss_pred CccchhHHHHHHHHHhC--CCccHHHHHHhcCCChHHHHHHHHHHHHcCCce
Q 025599 173 TELNKDHNQILELAQAQ--GFVTVDEVERRLSWTSGRAIDALDILLEEGLAM 222 (250)
Q Consensus 173 ~El~~D~~~vLela~~~--g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~W 222 (250)
..|+.++..|+.+++.. -.++..+|+...+.+.......|..|+..|++=
T Consensus 33 ~~Lt~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE~k~lIK 84 (95)
T 2yu3_A 33 KGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIK 84 (95)
T ss_dssp CSCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhCCCEE
Confidence 47899999999999964 449999999999999999999999999999863
No 121
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=84.38 E-value=0.64 Score=36.17 Aligned_cols=36 Identities=28% Similarity=0.197 Sum_probs=33.0
Q ss_pred CCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 189 QGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 189 ~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
.-+||+..|++.|+..-..|+.+|.+|+.+|++=.=
T Consensus 57 ~KlITpsvlseRlkI~gSLAR~aLreL~~kGlIk~V 92 (108)
T 3u5c_Z 57 YRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPI 92 (108)
T ss_dssp CSSBSHHHHHHTTCCCTTHHHHHHHHHSSSSSCEEE
T ss_pred CeEEeHHHhhhhhhhhHHHHHHHHHHHHHCCCEEEE
Confidence 568999999999999999999999999999997543
No 122
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=84.22 E-value=3 Score=30.83 Aligned_cols=37 Identities=19% Similarity=0.360 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCC
Q 025599 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (250)
Q Consensus 38 qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL 79 (250)
++..++.....|-.++.+.|..+ .|..++.++|..|-
T Consensus 6 ~~~~l~~~F~~~D~~~~G~i~~~-----el~~~l~~~~~~~~ 42 (149)
T 2mys_C 6 AADDFKEAFLLFDRTGDAKITAS-----QVGDIARALGQNPT 42 (149)
T ss_pred HHHHHHHHHHHhCCCCCCcCcHH-----HHHHHHHHhCCCCC
Confidence 45556666667777777777643 56677888887653
No 123
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=84.05 E-value=11 Score=27.77 Aligned_cols=37 Identities=14% Similarity=0.336 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCC
Q 025599 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (250)
Q Consensus 38 qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL 79 (250)
++..++.....|-..+.+.|..+ .|+.++.++|..|.
T Consensus 9 ~~~~l~~~F~~~D~d~~G~i~~~-----el~~~l~~~~~~~~ 45 (153)
T 3ox6_A 9 EIEELREAFREFDKDKDGYINCR-----DLGNCMRTMGYMPT 45 (153)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCHH-----HHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHhCCCCCCcCcHH-----HHHHHHHHcCCCCC
Confidence 34555666666777888888754 57778888887653
No 124
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=83.79 E-value=1.1 Score=36.05 Aligned_cols=52 Identities=17% Similarity=0.109 Sum_probs=44.3
Q ss_pred ccchhHHHHHHHHHhCC---CccHHHHHHhcCCChHHHHHHHHHHHHcCCceeec
Q 025599 174 ELNKDHNQILELAQAQG---FVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 174 El~~D~~~vLela~~~g---~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
.|+.-+..||.+....| .+|+.+|++.+++++.-+-..|+.|++.|++=+..
T Consensus 66 glt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~ 120 (181)
T 2fbk_A 66 GLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERRE 120 (181)
T ss_dssp TCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecC
Confidence 45667888888777544 49999999999999999999999999999997753
No 125
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=83.78 E-value=2.8 Score=31.61 Aligned_cols=55 Identities=15% Similarity=0.170 Sum_probs=43.9
Q ss_pred HHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCCCCCCcceeec
Q 025599 179 HNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWFP 237 (250)
Q Consensus 179 ~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw~P 237 (250)
...||.+.. .|-+|+.+|++.+|.+..-+...|..|.+.|++-..... ...||..
T Consensus 20 R~~Il~~L~-~~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~g---r~~~y~l 74 (118)
T 3f6o_A 20 RRAVLGRLS-RGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQG---RVRTCAI 74 (118)
T ss_dssp HHHHHHHHH-TCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEET---TEEEEEE
T ss_pred HHHHHHHHH-hCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecC---CEEEEEE
Confidence 344666665 478899999999999999999999999999999877554 4455543
No 126
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=83.70 E-value=1.9 Score=31.18 Aligned_cols=52 Identities=8% Similarity=-0.029 Sum_probs=39.3
Q ss_pred cchhHHHHHHHH-HhCC---CccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 175 LNKDHNQILELA-QAQG---FVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 175 l~~D~~~vLela-~~~g---~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
|+.-+..+|... ...+ .+|+.+|++.++.++.-+-..|+.|++.|++ .|...
T Consensus 10 l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv-~~~~d 65 (95)
T 2qvo_A 10 FKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMV-ECELE 65 (95)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSE-EEEEE
T ss_pred CchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCc-cCCCC
Confidence 444455555443 3222 3999999999999999999999999999999 55443
No 127
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=83.70 E-value=0.96 Score=38.16 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=38.6
Q ss_pred HHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeec
Q 025599 182 ILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 182 vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
|+.+.+..|.+|..+|++.+++++.-+...|..|+++|++=+..
T Consensus 11 I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~ 54 (214)
T 3hrs_A 11 LYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDK 54 (214)
T ss_dssp HHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEec
Confidence 45555568999999999999999999999999999999987653
No 128
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=83.23 E-value=0.82 Score=37.17 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=31.4
Q ss_pred CCccHHHHHHhcCCChHHHHHHHHHHHHcCCce
Q 025599 190 GFVTVDEVERRLSWTSGRAIDALDILLEEGLAM 222 (250)
Q Consensus 190 g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~W 222 (250)
-+||++.|++.|+.+-..|+.+|.+|+.+|++=
T Consensus 62 KlITpsvlseRlkI~gSLARkaLreL~~kGlIk 94 (143)
T 2xzm_8 62 KVLTVSTVVEKLKVNGSLARQLMRTMADRKLVE 94 (143)
T ss_dssp SEECHHHHHHHHCBCHHHHHHHHHHHHHTTSEE
T ss_pred eeecHHHHHHHhcchHHHHHHHHHHHHHCCCEE
Confidence 579999999999999999999999999999975
No 129
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=83.06 E-value=1.9 Score=32.66 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=44.3
Q ss_pred HHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCCCCCCcceeecC
Q 025599 179 HNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWFPC 238 (250)
Q Consensus 179 ~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw~P~ 238 (250)
...||.+.. .|..|+.+|++.+|.++.-....|..|++.|++-..... ...||.++
T Consensus 23 r~~IL~~L~-~~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~g---r~~~y~l~ 78 (118)
T 2jsc_A 23 RCRILVALL-DGVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYEG---RQVRYALA 78 (118)
T ss_dssp HHHHHHHHH-TTCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEECS---SSEEEEES
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEEC---CEEEEEEC
Confidence 345676655 466899999999999999999999999999999876543 45666554
No 130
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=82.68 E-value=4.4 Score=30.23 Aligned_cols=37 Identities=16% Similarity=0.115 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhc-ccccccChhHHHHHHHHHHHcCCCCC
Q 025599 38 QLATFRSQLEDFARKH-KNDIRKNPTFRSQFHEMCAKVGVDPL 79 (250)
Q Consensus 38 qL~~F~~~L~~Fa~~h-~~eI~~dp~fR~~F~~mC~siGVDPL 79 (250)
++..++.....|-.++ .+.|..+ .|+.++.++|.+|-
T Consensus 12 ~~~~l~~~F~~~D~d~~~G~i~~~-----el~~~l~~~g~~~~ 49 (146)
T 2qac_A 12 EKVDESDVRIYFNEKSSGGKISID-----NASYNARKLGLAPS 49 (146)
T ss_dssp HHSCHHHHHHHHHHHCBTTBEEHH-----HHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHhCccCCCCcccHH-----HHHHHHHHhCCCCC
Confidence 4455666677787887 7777654 56778888888764
No 131
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=82.37 E-value=2.3 Score=38.74 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=45.4
Q ss_pred cchhHHHHHH-----HHHhCCCccHHHHHHhc--CCChHHHHHHHHHHHHcCCceee
Q 025599 175 LNKDHNQILE-----LAQAQGFVTVDEVERRL--SWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 175 l~~D~~~vLe-----la~~~g~vt~~~L~~~l--~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
++.-|..||+ +.+..+.|++.+|++.+ +.|..=.+.-|.+|+++|++=.=
T Consensus 15 l~eR~~~IL~~i~~~yl~~~~pV~s~~La~~~~l~VS~aTIRrDL~~LE~~GlL~r~ 71 (338)
T 1stz_A 15 LNDRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIYQP 71 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEc
Confidence 5678889999 77788999999999998 99999999999999999998654
No 132
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=82.34 E-value=11 Score=28.25 Aligned_cols=37 Identities=19% Similarity=0.428 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCC
Q 025599 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (250)
Q Consensus 38 qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL 79 (250)
++..++..+..|-.++.+.|..+ .|..++.++|.+|-
T Consensus 8 ~~~~l~~~F~~~D~d~~G~i~~~-----el~~~l~~~g~~~~ 44 (148)
T 1exr_A 8 QIAEFKEAFALFDKDGDGTITTK-----ELGTVMRSLGQNPT 44 (148)
T ss_dssp HHHHHHHHHHHHCTTCSSEECHH-----HHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHCCCCCCcCcHH-----HHHHHHHHcCCCCC
Confidence 34556666667777777777753 57778888888763
No 133
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=81.60 E-value=2 Score=33.55 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=35.3
Q ss_pred HHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 184 ELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 184 ela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
.+....|.+|+.+|++.+|.+..-...+|..|+++|++-+.
T Consensus 47 ~~l~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~ 87 (155)
T 2h09_A 47 DLIREVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMI 87 (155)
T ss_dssp HHHHHHSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHhCCCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEe
Confidence 34445678999999999999999999999999999986554
No 134
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=81.51 E-value=12 Score=28.30 Aligned_cols=36 Identities=17% Similarity=0.330 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCC
Q 025599 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDP 78 (250)
Q Consensus 38 qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDP 78 (250)
++..++.....|-.++.+.|..+ .|..++.++|+.|
T Consensus 26 ~~~~l~~~F~~~D~d~~G~i~~~-----el~~~l~~~~~~~ 61 (169)
T 3qrx_A 26 QKQEIREAFDLFDTDGSGTIDAK-----ELKVAMRALGFEP 61 (169)
T ss_dssp HHHHHHHHHHHHCTTCCSEECHH-----HHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHhCCCCCCcCcHH-----HHHHHHHHcCCCC
Confidence 34556666667777777777754 5677788888765
No 135
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=81.43 E-value=3.4 Score=31.96 Aligned_cols=52 Identities=19% Similarity=0.336 Sum_probs=42.2
Q ss_pred ccchhHHHHHHHHH-----hCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeec
Q 025599 174 ELNKDHNQILELAQ-----AQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 174 El~~D~~~vLela~-----~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
.|+..+..||-... ...++|+++|++.+|.+..-+..+|+.|+++|++=+..
T Consensus 29 gLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 29 GLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 56666666654432 24569999999999999999999999999999998853
No 136
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=81.33 E-value=3 Score=33.40 Aligned_cols=76 Identities=20% Similarity=0.315 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHhhccccCCCeEEEEECCEEEEEecCCccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHH
Q 025599 137 AVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILL 216 (250)
Q Consensus 137 ~IS~~DI~rAik~L~~LG~g~~vi~ig~~~~v~svp~El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~ 216 (250)
.+...|+..+.+.|+.|+++ -...||.+.. .|-+|+.+|++.+|.+..-+...|..|.
T Consensus 39 ~~~~~~~~~~~~~l~aL~~p---------------------~R~~IL~~L~-~~~~t~~eLa~~lgls~stvs~hL~~L~ 96 (151)
T 3f6v_A 39 ALVTTNVLVVLDQLEVAAEP---------------------TRRRLVQLLT-SGEQTVNNLAAHFPASRSAISQHLRVLT 96 (151)
T ss_dssp ---------CCCHHHHHTSH---------------------HHHHHHHHGG-GCCEEHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred hhhhccHHHHHHHHHHhCCH---------------------HHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45666666666777776642 2455777776 5779999999999999999999999999
Q ss_pred HcCCceeecCCCCCCcceeec
Q 025599 217 EEGLAMVDDGHRDRKRRYWFP 237 (250)
Q Consensus 217 ~~Gl~WvD~q~~~~e~~Yw~P 237 (250)
+.|++...... ...||..
T Consensus 97 ~aGlV~~~~~G---r~~~y~l 114 (151)
T 3f6v_A 97 EAGLVTPRKDG---RFRYYRL 114 (151)
T ss_dssp HTTSEEEEEET---TEEEEEE
T ss_pred HCCCEEEEecC---CEEEEEE
Confidence 99999987543 4555553
No 137
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=81.30 E-value=5.1 Score=29.87 Aligned_cols=46 Identities=20% Similarity=0.188 Sum_probs=38.7
Q ss_pred HHHHHHHhCCCccHHHHHHhc-CCChHHHHHHHHHHHHcCCceeecCC
Q 025599 181 QILELAQAQGFVTVDEVERRL-SWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 181 ~vLela~~~g~vt~~~L~~~l-~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
.||..... |.+|..+|++.+ +.+..-.-..|..|++.|++-+....
T Consensus 26 ~IL~~L~~-~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~ 72 (112)
T 1z7u_A 26 SLMDELFQ-GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFN 72 (112)
T ss_dssp HHHHHHHH-SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEEC
T ss_pred HHHHHHHh-CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecC
Confidence 35555444 789999999999 99999999999999999999876543
No 138
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=80.60 E-value=2.6 Score=33.03 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=38.2
Q ss_pred ccchhHHHHHHHHHh-----CCCccHHHHHHhcCCChHHHHHHHHHHHHcCCc
Q 025599 174 ELNKDHNQILELAQA-----QGFVTVDEVERRLSWTSGRAIDALDILLEEGLA 221 (250)
Q Consensus 174 El~~D~~~vLela~~-----~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~ 221 (250)
.|+.-|-.+|..... .|.+|+.+|++.++.++.-.-..|+.|++.|++
T Consensus 30 gLt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glV 82 (148)
T 4fx0_A 30 GLTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRRDGLV 82 (148)
T ss_dssp TCCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHHTTSB
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCE
Confidence 356667778876653 356999999999999999999999999999987
No 139
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=80.57 E-value=4.9 Score=29.72 Aligned_cols=44 Identities=20% Similarity=0.123 Sum_probs=37.8
Q ss_pred HHHHHHhCCCccHHHHHHhc-CCChHHHHHHHHHHHHcCCceeecC
Q 025599 182 ILELAQAQGFVTVDEVERRL-SWTSGRAIDALDILLEEGLAMVDDG 226 (250)
Q Consensus 182 vLela~~~g~vt~~~L~~~l-~W~~~Ra~~~L~~l~~~Gl~WvD~q 226 (250)
||.... .|-.+..+|++.+ |.+..-.-..|..|++.|++=+-..
T Consensus 19 IL~~L~-~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~ 63 (107)
T 2hzt_A 19 ILXHLT-HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVY 63 (107)
T ss_dssp HHHHHT-TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHH-hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeec
Confidence 555444 5789999999999 9999999999999999999986543
No 140
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=79.96 E-value=10 Score=28.40 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCC
Q 025599 37 EQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (250)
Q Consensus 37 ~qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL 79 (250)
.|...++.....|-.++.+.|..+ .|+.++.++|.+|-
T Consensus 3 ~~~~~l~~~F~~~D~d~~G~I~~~-----el~~~l~~~g~~~~ 40 (143)
T 2obh_A 3 EQKQEIREAFDLFDADGTGTIDVK-----ELKVAMRALGFEPK 40 (143)
T ss_dssp HHHHHHHHHHHTTCTTCCSEEEGG-----GHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCCCcCcHH-----HHHHHHHHcCCCCC
Confidence 355667777777878888888776 46677788888763
No 141
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=79.90 E-value=0.52 Score=32.40 Aligned_cols=41 Identities=22% Similarity=0.413 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCCC
Q 025599 33 DLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLA 80 (250)
Q Consensus 33 ~~l~~qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL~ 80 (250)
.....||+.|++--..+. .+|.-+|--.++||-++.||...
T Consensus 18 akfkn~lqh~r~vaaaks-------~en~rlr~l~kqmcpsldvdsii 58 (63)
T 2c9l_Y 18 AKFKQLLQHYREVAAAKS-------SENDRLRLLLKQMCPSLDVDSII 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCTTCCHHHHS
T ss_pred HHHHHHHHHHHHHHHhhc-------ccchHHHHHHHHhCCcccccccC
Confidence 345556666665544433 36888999999999999999443
No 142
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=79.48 E-value=0.81 Score=34.51 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=32.8
Q ss_pred CCCc-cHHHHHHhcCCChHHHHHHHHHHHHcCCceeec
Q 025599 189 QGFV-TVDEVERRLSWTSGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 189 ~g~v-t~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
++.+ |..+|++.+|.+..-++++|..|..+|++-+-.
T Consensus 40 g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 40 NEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp TEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 4456 999999999999999999999999999986653
No 143
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=79.46 E-value=3.3 Score=29.90 Aligned_cols=47 Identities=13% Similarity=0.228 Sum_probs=39.9
Q ss_pred HHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeec
Q 025599 179 HNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 179 ~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
...+.+++-..+..|.+.|++.|..-=.||-..++.|+.+|++=--+
T Consensus 12 y~~A~~~V~~~~~aS~S~lQR~lrIGYnRAArlid~lE~~GiVgp~~ 58 (73)
T 2ve8_A 12 YDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMN 58 (73)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSBCCCC
T ss_pred HHHHHHHHHhcCCccHHHHHHHHccChHHHHHHHHHHHHCCcCCccc
Confidence 34466666667899999999999999999999999999999985443
No 144
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=79.33 E-value=9.2 Score=28.60 Aligned_cols=37 Identities=19% Similarity=0.421 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCC
Q 025599 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (250)
Q Consensus 38 qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL 79 (250)
++..++.....|-.++.+.|..+ .|+.++.++|..|-
T Consensus 18 ~~~~l~~~F~~~D~d~~G~i~~~-----e~~~~l~~~~~~~~ 54 (162)
T 1top_A 18 MIAEFKAAFDMFDADGGGDISTK-----ELGTVMRMLGQNPT 54 (162)
T ss_dssp HHHHHHHHHHTTTCSCSSEEEGG-----GHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHCCCCCCcCCHH-----HHHHHHHHcCCCCC
Confidence 34455666667777788888755 46677888887653
No 145
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=79.13 E-value=16 Score=26.60 Aligned_cols=36 Identities=19% Similarity=0.493 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCC
Q 025599 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDP 78 (250)
Q Consensus 38 qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDP 78 (250)
++..++.....|-..+.+.|..+ .|+.++.++|..|
T Consensus 9 ~~~~l~~~F~~~D~~~~G~i~~~-----e~~~~l~~~~~~~ 44 (147)
T 4ds7_A 9 QIAEFKEAFALFDKDNSGSISAS-----ELATVMRSLGLSP 44 (147)
T ss_dssp HHHHHHHHHHHHCTTCSSEEEHH-----HHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHCCCCCCCcCHH-----HHHHHHHHhCCCC
Confidence 45556666666777777777654 5677788888765
No 146
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=78.94 E-value=15 Score=27.50 Aligned_cols=37 Identities=11% Similarity=0.256 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCC
Q 025599 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (250)
Q Consensus 38 qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL 79 (250)
++..++.....|-.++.+.|..+ .|+.++.++|..|-
T Consensus 16 ~~~~l~~~F~~~D~d~~G~i~~~-----el~~~l~~~g~~~~ 52 (156)
T 1wdc_B 16 QIQEMKEAFSMIDVDRDGFVSKE-----DIKAISEQLGRAPD 52 (156)
T ss_dssp HHHHHHHHHHHHCTTCSSSCCHH-----HHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHCCCCCCcCcHH-----HHHHHHHHhCCCCC
Confidence 45556666777777777777643 67788888888754
No 147
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=78.88 E-value=3 Score=34.78 Aligned_cols=47 Identities=23% Similarity=0.311 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 177 KDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 177 ~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
.-+..||.+.+ .|.+|..+|++.+|.+..-+...|..|++.|++-..
T Consensus 20 ~~~~~IL~~L~-~~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 20 DTRRKILKLLR-NKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHHHHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 34556888877 588999999999999999999999999999999876
No 148
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=78.67 E-value=3.9 Score=37.66 Aligned_cols=56 Identities=16% Similarity=0.084 Sum_probs=49.6
Q ss_pred CCccchhHHHHHHHHHhC--CCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 172 PTELNKDHNQILELAQAQ--GFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 172 p~El~~D~~~vLela~~~--g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
+-.|+.-|-.||...... |.+|..+|++.+++++...-..|+.|++.|++-+-...
T Consensus 399 ~~~lt~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~~~~ 456 (487)
T 1hsj_A 399 KFNLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSL 456 (487)
T ss_dssp SCCCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEECC
T ss_pred hcCCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCC
Confidence 456888898899888876 88999999999999999999999999999999885444
No 149
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=78.07 E-value=5.3 Score=34.59 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=47.5
Q ss_pred CCccchhHHHHHHHHHhCC--CccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 172 PTELNKDHNQILELAQAQG--FVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 172 p~El~~D~~~vLela~~~g--~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
+..|+.-|-.||......+ .+|+.+|++.+++++...-..|+.|++.|++-+-...
T Consensus 153 ~~gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~GlV~R~~~~ 210 (250)
T 1p4x_A 153 HLTLSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKERST 210 (250)
T ss_dssp HCSSCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEECS
T ss_pred hCCCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeeCCC
Confidence 3457777888888777543 5999999999999999999999999999999987554
No 150
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=77.01 E-value=20 Score=26.63 Aligned_cols=37 Identities=14% Similarity=0.416 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHH--hcccccccChhHHHHHHHHHHHcCCCCC
Q 025599 38 QLATFRSQLEDFAR--KHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (250)
Q Consensus 38 qL~~F~~~L~~Fa~--~h~~eI~~dp~fR~~F~~mC~siGVDPL 79 (250)
++..++.....|-. .+.+.|..+ .|+.++.++|+.|-
T Consensus 7 ~~~~l~~~F~~~D~~~d~~G~i~~~-----el~~~l~~~g~~~~ 45 (156)
T 1wdc_C 7 EIDDLKDVFELFDFWDGRDGAVDAF-----KLGDVCRCLGINPR 45 (156)
T ss_dssp HHHHHHHHHHHHHHHTCSSSCEEGG-----GHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHccCCCCCCCCcHH-----HHHHHHHHcCCCCC
Confidence 45556677778888 888888766 46678888888764
No 151
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=76.52 E-value=11 Score=28.52 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCC-CCC
Q 025599 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGV-DPL 79 (250)
Q Consensus 38 qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGV-DPL 79 (250)
++..++.....|-.++.+.|..+ .|..++.++|. +|-
T Consensus 23 ~~~~l~~~F~~~D~d~~G~i~~~-----el~~~l~~~g~~~~~ 60 (166)
T 2mys_B 23 EIEDFKEAFTVIDQNADGIIDKD-----DLRETFAAMGRLNVK 60 (166)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHH-----HHHHHHHHhCCCCCC
Confidence 45556666667777777777644 67788888888 653
No 152
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=75.97 E-value=5.5 Score=29.98 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=42.5
Q ss_pred cchhHHHHHHHH-H-----hCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecC
Q 025599 175 LNKDHNQILELA-Q-----AQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDG 226 (250)
Q Consensus 175 l~~D~~~vLela-~-----~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q 226 (250)
|+.-+-.+|... + ..|.++..+|++.++|+...-...|..|++.|++=+...
T Consensus 14 l~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~~GLV~r~~~ 71 (96)
T 2obp_A 14 IDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVSVE 71 (96)
T ss_dssp CCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHHHCCCEEeecC
Confidence 666666776522 2 237789999999999999999999999999999988544
No 153
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=75.92 E-value=5.3 Score=29.48 Aligned_cols=38 Identities=24% Similarity=0.481 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCC
Q 025599 37 EQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (250)
Q Consensus 37 ~qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL 79 (250)
.|+..++.....|-..+.+.|..+ .|+.++.++|.+|-
T Consensus 4 ~~~~~l~~~F~~~D~d~~G~i~~~-----el~~~l~~~g~~~~ 41 (143)
T 3j04_B 4 SQIQEFKEAFNMIDQNRDGFIDKE-----DLHDMLASMGKNPT 41 (143)
T ss_dssp HHHHHHHHHHTTTCSSCTTCCCHH-----HHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHhCCCCCCCcCHH-----HHHHHHHHhCCCCC
Confidence 355566666666767777777654 57788888998763
No 154
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=75.58 E-value=2.2 Score=29.55 Aligned_cols=37 Identities=19% Similarity=0.461 Sum_probs=28.5
Q ss_pred hhcccCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccC
Q 025599 109 ATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLG 154 (250)
Q Consensus 109 ~tr~~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG 154 (250)
+....|||++.++++-..+ | |+.++|..+++.|+.=|
T Consensus 17 ~yIr~sGGildI~~~a~ky----g-----V~kdeV~~~LrrLe~KG 53 (59)
T 2xvc_A 17 DYIVNNGGFLDIEHFSKVY----G-----VEKQEVVKLLEALKNKG 53 (59)
T ss_dssp HHHHHTTSEEEHHHHHHHH----C-----CCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCEEeHHHHHHHh----C-----CCHHHHHHHHHHHHHCC
Confidence 3445689999988775443 3 99999999999998644
No 155
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Probab=75.41 E-value=2.5 Score=31.25 Aligned_cols=33 Identities=18% Similarity=0.415 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCC
Q 025599 42 FRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (250)
Q Consensus 42 F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL 79 (250)
++.....|-.++.+.|.. ..|+.++.++|.+|-
T Consensus 7 l~~~F~~~D~d~~G~i~~-----~el~~~l~~~g~~~~ 39 (140)
T 1ggw_A 7 YKQAFSLFDRHGTGRIPK-----TSIGDLLRACGQNPT 39 (140)
T ss_dssp THHHHHHTCSSSSSEECH-----HHHHHHHHHTSCCCC
T ss_pred HHHHHHHHCCCCCCcCCH-----HHHHHHHHHcCCCCC
Confidence 344445555555666653 256677777777653
No 156
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=75.40 E-value=1.2 Score=34.54 Aligned_cols=37 Identities=22% Similarity=0.118 Sum_probs=33.3
Q ss_pred hCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 188 AQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 188 ~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
..-+||++.|++.|+..-..|+.+|.+|+.+|++=.=
T Consensus 57 k~KlITpsvlseRlkI~gSLAR~aLreL~~kGlIk~V 93 (108)
T 3iz6_V 57 KYKQITPSVLSERLRINGSLARQAIKDLESRGAIRVV 93 (108)
T ss_dssp HHSSEEEHHHHHHHHTCCHHHHHHHHHHHHHHTSCEE
T ss_pred CCeEEeHHHHHhhhcccHHHHHHHHHHHHHCCCEEEE
Confidence 3579999999999999999999999999999987443
No 157
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=75.27 E-value=2.9 Score=35.02 Aligned_cols=44 Identities=16% Similarity=0.065 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCC
Q 025599 177 KDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGL 220 (250)
Q Consensus 177 ~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl 220 (250)
.-|..|+++.+.+|+||+++|++.++-|..-.+.=|.+|-..|+
T Consensus 12 eR~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~~~l 55 (190)
T 4a0z_A 12 KRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPEL 55 (190)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcCcch
Confidence 34778999999999999999999999999998888888866654
No 158
>2i3o_A Gamma-glutamyltransferase related protein; structural genomics, PSI, protein structure initiative; 2.03A {Thermoplasma acidophilum} SCOP: d.153.1.6
Probab=74.81 E-value=3.4 Score=39.91 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=26.3
Q ss_pred ccccchh-hhHHHHHHHhhhhcccCCCceeHHHHHHH
Q 025599 91 GIGDFYY-ELGVQIVEICLATRPHNGGLINLQELCNL 126 (250)
Q Consensus 91 G~gdfy~-eLavqIvevC~~tr~~nGGli~l~el~~~ 126 (250)
|...||. ++|.+|++.+. .+||+|+++||-..
T Consensus 199 G~~~FY~G~iA~~iv~~~~----~~GG~lt~~DLa~y 231 (516)
T 2i3o_A 199 GFRSFYDGSLADIIIAGLE----GTGSPLSDRDLRVY 231 (516)
T ss_dssp CTTHHHHSHHHHHHHHTTT----TTCCCCCHHHHHHC
T ss_pred CcccccCCHHHHHHHHHHH----HcCCCCCHHHHhhC
Confidence 5567886 89999998886 57999999999654
No 159
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=74.23 E-value=8.3 Score=28.37 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=36.8
Q ss_pred HHHHHHhCCCccHHHHHHhc-CCChHHHHHHHHHHHHcCCceeecC
Q 025599 182 ILELAQAQGFVTVDEVERRL-SWTSGRAIDALDILLEEGLAMVDDG 226 (250)
Q Consensus 182 vLela~~~g~vt~~~L~~~l-~W~~~Ra~~~L~~l~~~Gl~WvD~q 226 (250)
||.... .|..+..+|++.+ |.+..-.-..|..|++.|++=+-..
T Consensus 30 IL~~L~-~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~ 74 (107)
T 2fsw_A 30 IIFQIN-RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQY 74 (107)
T ss_dssp HHHHHT-TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHH-hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeec
Confidence 444444 5789999999999 5999999999999999999987543
No 160
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=74.11 E-value=23 Score=25.80 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCC
Q 025599 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDP 78 (250)
Q Consensus 38 qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDP 78 (250)
|+..++.....|-..+.+.|..+ .|..++.++|..|
T Consensus 4 ~~~~l~~~F~~~D~d~~G~i~~~-----el~~~l~~~~~~~ 39 (142)
T 2bl0_C 4 QVSEFKEAFELFDSERTGFITKE-----GLQTVLKQFGVRV 39 (142)
T ss_dssp HHHHHHHHHHHHCTTCSSEEEHH-----HHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCCCcCcHH-----HHHHHHHHhCCCC
Confidence 45556666667777777777643 5667777778765
No 161
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=74.09 E-value=4.9 Score=29.67 Aligned_cols=41 Identities=12% Similarity=0.157 Sum_probs=36.3
Q ss_pred HHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 182 ILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 182 vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
||..+. .| ++...|+..+|-+...+...|+.|+..|++=++
T Consensus 13 IL~~i~-~~-~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~ 53 (95)
T 1r7j_A 13 ILEACK-SG-SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQE 53 (95)
T ss_dssp HHHHHT-TC-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHH-cC-CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE
Confidence 555555 46 999999999999999999999999999999776
No 162
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=73.25 E-value=3.6 Score=40.18 Aligned_cols=43 Identities=26% Similarity=0.223 Sum_probs=39.2
Q ss_pred cchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHH
Q 025599 175 LNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (250)
Q Consensus 175 l~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (250)
++.++..||.++...+.+|..+|++.++.+...++..|..|+.
T Consensus 428 ~~~~~~~iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~~ 470 (583)
T 3lmm_A 428 DDYRIAIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQ 470 (583)
T ss_dssp TCHHHHHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHHh
Confidence 4556678999988899999999999999999999999999999
No 163
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A
Probab=73.15 E-value=23 Score=26.98 Aligned_cols=37 Identities=19% Similarity=0.430 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCC
Q 025599 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (250)
Q Consensus 38 qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL 79 (250)
++..++.....|-.++.+.|..+ .|+.++.++|.+|-
T Consensus 9 ~~~~l~~~F~~~D~d~~G~i~~~-----e~~~~l~~~~~~~~ 45 (179)
T 2f2o_A 9 QIAEFKEAFSLFDKDGDGTITTK-----ELGTVMRSLGQNPT 45 (179)
T ss_dssp HHHHHHHHHHHHCTTCSSCBCHH-----HHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHCCCCCCcCcHH-----HHHHHHHHcCCCCC
Confidence 34455666667777777777754 57778888887653
No 164
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=73.01 E-value=6.8 Score=31.32 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCC
Q 025599 39 LATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (250)
Q Consensus 39 L~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL 79 (250)
+..++.....|-..+.+.|..+ .|+.++.++|++|-
T Consensus 56 ~~~l~~~F~~~D~d~~G~i~~~-----el~~~l~~lg~~~~ 91 (196)
T 3dtp_E 56 VQEFKEAFQLIDQDKDGFISKN-----DIRATFDSLGRLCT 91 (196)
T ss_dssp HHHHHHHHHHHCCSCSSBCCHH-----HHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHCCCCCCcCCHH-----HHHHHHHHhCCCCC
Confidence 4455566666667777777754 57788888897753
No 165
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=72.95 E-value=27 Score=26.10 Aligned_cols=94 Identities=13% Similarity=0.286 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHH--HhcccccccChhHHHHHHHHHHHcCCCCCCCCCcccccccccccchhhhHHHHHHHhhhhcccC
Q 025599 37 EQLATFRSQLEDFA--RKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHN 114 (250)
Q Consensus 37 ~qL~~F~~~L~~Fa--~~h~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~n 114 (250)
.|+..++.....|= ..+.+.|..+ .|+.++.++|..|-.. ++-++... ...+
T Consensus 6 ~~~~~l~~~F~~~D~~~d~~G~i~~~-----el~~~l~~lg~~~~~~--------------------~~~~l~~~-~d~~ 59 (159)
T 2ovk_C 6 DEIEEVREVFDLFDFWDGRDGDVDAA-----KVGDLLRCLGMNPTEA--------------------QVHQHGGT-KKMG 59 (159)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSEEEGG-----GHHHHHHHTTCCCCHH--------------------HHHHTTCC-SSTT
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCcHH-----HHHHHHHHcCCCCCHH--------------------HHHHHHHH-hcCC
Confidence 34556666677776 7888888876 4667788889876320 01111111 1234
Q ss_pred CCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCe
Q 025599 115 GGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGY 157 (250)
Q Consensus 115 GGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~g~ 157 (250)
.|.|++.|.+..+...... ...-..+++..|.+.+-.=|+|+
T Consensus 60 ~g~i~~~eF~~~~~~~~~~-~~~~~~~~l~~~F~~~D~d~~G~ 101 (159)
T 2ovk_C 60 EKAYKLEEILPIYEEMSSK-DTGTAADEFMEAFKTFDREGQGL 101 (159)
T ss_dssp SCEEEHHHHHHHHHHHTTC-STTCCHHHHHHHHHHTCTTSSSE
T ss_pred CCeEcHHHHHHHHHHHhhc-cCCCcHHHHHHHHHHHCCCCCCc
Confidence 5788888877766432111 12334555655555554444443
No 166
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=72.78 E-value=7.1 Score=29.67 Aligned_cols=35 Identities=11% Similarity=0.146 Sum_probs=32.1
Q ss_pred CCCccHHHHHHhcCCChHHHHHHHHHHHHcCCcee
Q 025599 189 QGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMV 223 (250)
Q Consensus 189 ~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~Wv 223 (250)
.+.+|.++|++.+|.+..-....|..|.+.|++-.
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~ 58 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKS 58 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEe
Confidence 46799999999999999999999999999999643
No 167
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=72.67 E-value=9.8 Score=36.16 Aligned_cols=93 Identities=20% Similarity=0.411 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCCCCCCcccccccccccchhhhHHHHHHHhhhhcccCCC
Q 025599 37 EQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGG 116 (250)
Q Consensus 37 ~qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~nGG 116 (250)
.|++.|++....|=.++.+.|..+ .|+.++.++|++|-.. +|-++...--..+-|
T Consensus 299 EEI~ELREaF~~fDkDgdG~IS~e-----ELk~aLrsLG~~~Tee--------------------EI~~Lf~~~D~DgDG 353 (440)
T 3u0k_A 299 EQIAEFKEAFSLFDKDGDGTITTK-----ELGTVMRSLGQNPTEA--------------------ELQDMINEVDADGDG 353 (440)
T ss_dssp HHHHHHHHHHHHHCTTCSSEECHH-----HHHHHHHHTTCCCCHH--------------------HHHHHHHHHCSSCSS
T ss_pred HHHHHHHHHHHHHcCCCCCEECHH-----HHHHHHHHcCCCCCHH--------------------HHHHHHHHhCCCCCC
Confidence 577788888888988898888765 5778888899886321 111122222223447
Q ss_pred ceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCe
Q 025599 117 LINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGY 157 (250)
Q Consensus 117 li~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~g~ 157 (250)
.|++.|.+..+.+... ..-++++|.+|.+.+-.=|+|+
T Consensus 354 ~IdFeEFl~lms~~lk---~~d~eeeLreAFk~fDkDgdG~ 391 (440)
T 3u0k_A 354 TIDFPEFLIMMARKMK---DTDSEEEIREAFRVFDKDGNGY 391 (440)
T ss_dssp SEEHHHHHHHHHTC---------CHHHHHHHHHHCTTCSSE
T ss_pred cCcHHHHHHHHHHHhc---CCChHHHHHHHHHHHCCCCcCc
Confidence 8888888777655321 2235566777766665545554
No 168
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=71.85 E-value=23 Score=26.26 Aligned_cols=37 Identities=14% Similarity=0.314 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHH-HhcccccccChhHHHHHHHHHHHcCCCCC
Q 025599 38 QLATFRSQLEDFA-RKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (250)
Q Consensus 38 qL~~F~~~L~~Fa-~~h~~eI~~dp~fR~~F~~mC~siGVDPL 79 (250)
++..++.....|- ..+.+.|..+ .|+.++.++|+.|-
T Consensus 11 ~~~~l~~~F~~~D~~~~~G~i~~~-----e~~~~l~~~~~~~~ 48 (158)
T 2jnf_A 11 QVKLLETAFRDFETPEGSGRVSTD-----QIGIILEVLGIQQT 48 (158)
T ss_dssp HHHHHHHHHHHSBCSSSCSSEEHH-----HHHHHHHHTTCSCS
T ss_pred HHHHHHHHHHHhCCCCCCCcCcHH-----HHHHHHHHhCCCCC
Confidence 3444555556666 6677777643 67788888887753
No 169
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=71.47 E-value=8.6 Score=29.79 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=37.2
Q ss_pred HHHHHHhCCCccHHHHHHhc-CCChHHHHHHHHHHHHcCCceeecC
Q 025599 182 ILELAQAQGFVTVDEVERRL-SWTSGRAIDALDILLEEGLAMVDDG 226 (250)
Q Consensus 182 vLela~~~g~vt~~~L~~~l-~W~~~Ra~~~L~~l~~~Gl~WvD~q 226 (250)
||.... .|..+..+|++.+ |.+..-.-..|..|++.|++-+-..
T Consensus 40 IL~~L~-~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~ 84 (131)
T 1yyv_A 40 ILVALR-DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSY 84 (131)
T ss_dssp HHHHGG-GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHH-cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEec
Confidence 444444 5889999999999 7999999999999999999987543
No 170
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=71.45 E-value=6.9 Score=33.22 Aligned_cols=46 Identities=11% Similarity=0.062 Sum_probs=39.4
Q ss_pred HHHHHHHh-CCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecC
Q 025599 181 QILELAQA-QGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDG 226 (250)
Q Consensus 181 ~vLela~~-~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q 226 (250)
.||++... .+.+|..+|++.+|.++.-+...|..|++.|++-.|..
T Consensus 10 ~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~~ 56 (241)
T 2xrn_A 10 SIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEALGP 56 (241)
T ss_dssp HHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEECGG
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 46766654 34799999999999999999999999999999998743
No 171
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=70.75 E-value=10 Score=32.16 Aligned_cols=44 Identities=23% Similarity=0.413 Sum_probs=38.7
Q ss_pred HHHHHHHh-CCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 181 QILELAQA-QGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 181 ~vLela~~-~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
.||++... .+.+|..+|++.+|.++.-+...|..|++.|++-.|
T Consensus 12 ~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~ 56 (249)
T 1mkm_A 12 EILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRK 56 (249)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEC
Confidence 46776654 447999999999999999999999999999999988
No 172
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=70.62 E-value=2.8 Score=33.51 Aligned_cols=37 Identities=19% Similarity=0.472 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCC
Q 025599 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (250)
Q Consensus 38 qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL 79 (250)
|++.|+.....|=.++.+.|..+ .|...+.++|.+|-
T Consensus 9 qi~elk~~F~~~D~d~dG~I~~~-----El~~~l~~lg~~~~ 45 (176)
T 2lhi_A 9 QIAEFKEAFALFDKDNNGSISSS-----ELATVMRSLGLSPS 45 (176)
T ss_dssp GGGHHHHHHHTTCSSCSSCBCHH-----HHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHCCCCCCCCCHH-----HHHHHHHHcCCChh
Confidence 45667777777777888888765 46678888898874
No 173
>2e0w_A Gamma-glutamyltranspeptidase; NTN hydrolase, precursor, gamma-GTP, post-translational PROC maturation, transferase; 2.55A {Escherichia coli K12} SCOP: d.153.1.6
Probab=70.27 E-value=4.9 Score=39.16 Aligned_cols=74 Identities=24% Similarity=0.346 Sum_probs=44.9
Q ss_pred HHHHHHHhcccccccChhHHHHHHHHHHHcCCCCCCCCCcccc----cc------cccccchh-hhHHHHHHHhhhhccc
Q 025599 45 QLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWA----EL------LGIGDFYY-ELGVQIVEICLATRPH 113 (250)
Q Consensus 45 ~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws----~~------lG~gdfy~-eLavqIvevC~~tr~~ 113 (250)
.|..........++++|.+++-|. ..=| .|+....-+-. ++ -|...||. ++|.+||+... .
T Consensus 162 ~la~~~~~~~~~l~~~p~~~~~f~---~~~G-~~~~~G~~~~~p~LA~TL~~IA~~G~~~FY~G~iA~~iv~~~~----~ 233 (556)
T 2e0w_A 162 ALADDLKTYGSEVLPNHENSKAIF---WKEG-EPLKKGDTLVQANLAKSLEMIAENGPDEFYKGTIAEQIAQEMQ----K 233 (556)
T ss_dssp HHHHHHHHTHHHHSTTSHHHHHHH---EETT-EECCTTCEECCHHHHHHHHHHHHHCTHHHHHSHHHHHHHHHHH----H
T ss_pred HHHHHHHHhHHHhhcCchHHHhcc---CCCC-ccCCCCCEeeCHHHHHHHHHHHhhCcccccCCHHHHHHHHHHH----H
Confidence 344444455556777888876662 1112 24432211110 11 24567885 89999999887 4
Q ss_pred CCCceeHHHHHHH
Q 025599 114 NGGLINLQELCNL 126 (250)
Q Consensus 114 nGGli~l~el~~~ 126 (250)
+||+|+++||-..
T Consensus 234 ~GG~lt~~DLa~y 246 (556)
T 2e0w_A 234 NGGLITKEDLAAY 246 (556)
T ss_dssp SSCCCCHHHHHTC
T ss_pred cCCCcCHHHHhhC
Confidence 6999999999654
No 174
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=69.62 E-value=15 Score=28.80 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=38.3
Q ss_pred HHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 182 ILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 182 vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
||..+. .|..+.++|++.+|.+..-.-..|..|++.|++=+-...
T Consensus 29 IL~~L~-~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~ 73 (146)
T 2f2e_A 29 IVRDAF-EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAE 73 (146)
T ss_dssp HHHHHH-TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHH-hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 454444 578999999999999999999999999999999876443
No 175
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=69.40 E-value=14 Score=24.18 Aligned_cols=40 Identities=25% Similarity=0.228 Sum_probs=31.9
Q ss_pred HHHHHHHhCCCccHHHHHHhc-----CCChHHHHHHHHHHHHcCCcee
Q 025599 181 QILELAQAQGFVTVDEVERRL-----SWTSGRAIDALDILLEEGLAMV 223 (250)
Q Consensus 181 ~vLela~~~g~vt~~~L~~~l-----~W~~~Ra~~~L~~l~~~Gl~Wv 223 (250)
.++.+.+..+++|+++|.+.+ +.+..-....|+ ..|++=+
T Consensus 9 ~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~---~lg~v~~ 53 (64)
T 2p5k_A 9 KIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIK---ELHLVKV 53 (64)
T ss_dssp HHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH---HHTCEEE
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH---HcCCEEE
Confidence 456677778999999999999 999888887777 5577733
No 176
>2kmu_A ATP-dependent DNA helicase Q4; recql4, DNA-replication, homeodomain-like, ATP-BIN cataract, craniosynostosis, disease mutation, dwarfism; NMR {Homo sapiens}
Probab=69.39 E-value=2.8 Score=28.77 Aligned_cols=37 Identities=22% Similarity=0.439 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc-----ccccChh-HHHHHHHHH
Q 025599 32 TDLMKEQLATFRSQLEDFARKHKN-----DIRKNPT-FRSQFHEMC 71 (250)
Q Consensus 32 ~~~l~~qL~~F~~~L~~Fa~~h~~-----eI~~dp~-fR~~F~~mC 71 (250)
+.++...|.... .+|+.+|.. ||+.||+ ++..++.|-
T Consensus 6 ~~~lk~~LK~WE---~~F~~~~GRkP~k~DIk~~p~~I~~~YK~Y~ 48 (56)
T 2kmu_A 6 LRDVRERLQAWE---RAFRRQRGRRPSQDDVEAAPEETRALYREYR 48 (56)
T ss_dssp HHHHHHHHHHHH---HHHHHHTCSCCCHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHhCCCCCHHHHHcCHHHHHHHHHHHH
Confidence 444555555554 357788854 7999999 999998874
No 177
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=68.81 E-value=17 Score=28.49 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=43.6
Q ss_pred chhHHHHHHHHHh-CCCccHHHHHHhc-----CCChHHHHHHHHHHHHcCCceeecCC
Q 025599 176 NKDHNQILELAQA-QGFVTVDEVERRL-----SWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 176 ~~D~~~vLela~~-~g~vt~~~L~~~l-----~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
+.-...||++... .+.+|+++|.+.+ +.+..=.-..|+.|+..|++-.=+..
T Consensus 21 T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~ 78 (145)
T 2fe3_A 21 TPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTYG 78 (145)
T ss_dssp CHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECCT
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEeeC
Confidence 4445668888764 6799999999988 89999999999999999999876554
No 178
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=68.18 E-value=8.7 Score=27.65 Aligned_cols=44 Identities=20% Similarity=0.393 Sum_probs=37.9
Q ss_pred HHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCc--eeecC
Q 025599 183 LELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLA--MVDDG 226 (250)
Q Consensus 183 Lela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~--WvD~q 226 (250)
++.+..+-.|..++|+.++|.+..-|..+|+.|+.+|.+ =+||.
T Consensus 13 i~yIk~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDR 58 (72)
T 1wi9_A 13 INYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDR 58 (72)
T ss_dssp HHHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTT
T ss_pred HHHHHHcCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCC
Confidence 455566778999999999999999999999999999987 46764
No 179
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=67.94 E-value=6.9 Score=34.93 Aligned_cols=44 Identities=11% Similarity=0.199 Sum_probs=40.2
Q ss_pred HHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCce
Q 025599 179 HNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAM 222 (250)
Q Consensus 179 ~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~W 222 (250)
+..+|++.+..+++|.++|++.++-|..-.+..|..|.+.|+.=
T Consensus 7 ~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i 50 (321)
T 1bia_A 7 PLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDV 50 (321)
T ss_dssp HHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCcE
Confidence 55688888888999999999999999999999999999999874
No 180
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=67.47 E-value=8.1 Score=35.00 Aligned_cols=45 Identities=16% Similarity=0.164 Sum_probs=41.2
Q ss_pred HHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCcee
Q 025599 179 HNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMV 223 (250)
Q Consensus 179 ~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~Wv 223 (250)
...||++....|.+|..+|++.+|.|+.-....+++|+++|++--
T Consensus 18 ~~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~ 62 (406)
T 1z6r_A 18 AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQE 62 (406)
T ss_dssp HHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 345899999899999999999999999999999999999999754
No 181
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=67.18 E-value=5.1 Score=30.17 Aligned_cols=32 Identities=9% Similarity=0.156 Sum_probs=30.1
Q ss_pred cHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 193 TVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 193 t~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
|..+|++.+|-+..-++++|..|+.+|++-..
T Consensus 35 s~~~La~~~~vSr~tvr~al~~L~~~Gli~~~ 66 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQSLLDDNVIEKR 66 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 99999999999999999999999999997555
No 182
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=66.99 E-value=5 Score=31.06 Aligned_cols=35 Identities=11% Similarity=0.164 Sum_probs=31.8
Q ss_pred Cc-cHHHHHHhcCCChHHHHHHHHHHHHcCCceeec
Q 025599 191 FV-TVDEVERRLSWTSGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 191 ~v-t~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
.+ |..+|++.||-|..-.++||..|..+|++-.-.
T Consensus 37 ~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~~ 72 (134)
T 4ham_A 37 KILSIREFASRIGVNPNTVSKAYQELERQEVIITVK 72 (134)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEc
Confidence 46 899999999999999999999999999987653
No 183
>3a4c_A DNA replication factor CDT1; alpha-beta structure, cell cycle, DNA- binding, nucleus, phosphoprotein, proto-oncogene, UBL conjugation; HET: DNA; 1.89A {Mus musculus} PDB: 2rqq_A*
Probab=66.83 E-value=41 Score=25.82 Aligned_cols=69 Identities=12% Similarity=0.161 Sum_probs=52.7
Q ss_pred cCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccc-cCCCeEEEEECCEEEEEecCCccchhHHHHHHHHH
Q 025599 113 HNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKV-LGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQ 187 (250)
Q Consensus 113 ~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~-LG~g~~vi~ig~~~~v~svp~El~~D~~~vLela~ 187 (250)
+--|.++|+.+++++.. ++...+|+.++..=++.|.. +..=+.+..+....|++ +.. +.|...|++-.+
T Consensus 29 EkK~vl~~e~~~~ki~~---Syr~~ls~~EmE~hl~lL~ellPdWls~~~vR~~~ylK-l~k--~~dl~~i~~rLe 98 (106)
T 3a4c_A 29 ERKPALTMEVVCARMVD---SCQTALSPGEMEKHLVLLAELLPDWLSLHRIRTDTYVK-LDK--AVDLAGLTARLA 98 (106)
T ss_dssp CSSSEEEHHHHHHHHHH---TSCCSCCHHHHHHHHHHHHHHCTTTEEEEEETTEEEEE-ECT--TSCHHHHHHHHH
T ss_pred cccCCccHHHHHHHHHh---hhhccCCHHHHHHHHHHHHHhCcchheeeeeeccceee-eeh--hhhHHHHHHHHH
Confidence 34589999999999886 44578999999999999964 56668889999888999 433 345666665443
No 184
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=66.72 E-value=14 Score=26.86 Aligned_cols=56 Identities=13% Similarity=0.069 Sum_probs=48.6
Q ss_pred HHHHHHhCCCccHHHHHHhcCC-ChHHHHHHHHHHHHcCCceeecCCCCCCcceeecCcc
Q 025599 182 ILELAQAQGFVTVDEVERRLSW-TSGRAIDALDILLEEGLAMVDDGHRDRKRRYWFPCAS 240 (250)
Q Consensus 182 vLela~~~g~vt~~~L~~~l~W-~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw~P~l~ 240 (250)
|..+....|..|+.+|.+..|. +..-.-.+|-.|.+|+.+-++... .-+|.+..+-
T Consensus 15 VW~~L~~~~~~s~~el~k~t~l~~d~el~lAiGWLaREdKI~~~~~~---~~l~v~l~~~ 71 (77)
T 2l01_A 15 IWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSEVE---GEIFVKLVLE 71 (77)
T ss_dssp HHHHHTTSSCEEHHHHHHHHTCSCHHHHHHHHHHHHHTTCEEEEEET---TEEEEEECSS
T ss_pred HHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHhhcCceEEEeeC---CEEEEEeecc
Confidence 5556666789999999999999 999999999999999999999887 5788877664
No 185
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=66.64 E-value=5.2 Score=30.87 Aligned_cols=34 Identities=12% Similarity=0.009 Sum_probs=31.3
Q ss_pred Cc-cHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 191 FV-TVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 191 ~v-t~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
.+ |..+|++.+|.|..-++++|..|..+|++-.-
T Consensus 34 ~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~ 68 (126)
T 3by6_A 34 QLPSVRETALQEKINPNTVAKAYKELEAQKVIRTI 68 (126)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 45 99999999999999999999999999998665
No 186
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=66.18 E-value=17 Score=28.48 Aligned_cols=39 Identities=23% Similarity=0.146 Sum_probs=35.6
Q ss_pred CCCccHHHHHHhc-CCChHHHHHHHHHHHHcCCceeecCC
Q 025599 189 QGFVTVDEVERRL-SWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 189 ~g~vt~~~L~~~l-~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
.|-.+..+|++.+ |.+..-.-..|..|++.|++-+-...
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~ 76 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYH 76 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecC
Confidence 6889999999999 99999999999999999999887544
No 187
>2dg5_A Gamma-glutamyltranspeptidase; gamma-glutamyltransferase, GGT, gamma-GT, glutathione; HET: GLU; 1.60A {Escherichia coli K12} SCOP: d.153.1.6 PDB: 2dbu_A 2dbw_A* 2dbx_A* 2e0x_A 2e0y_A 2z8i_A* 2z8j_A* 2z8k_A*
Probab=66.08 E-value=6.7 Score=36.20 Aligned_cols=74 Identities=24% Similarity=0.341 Sum_probs=44.8
Q ss_pred HHHHHHHhcccccccChhHHHHHHHHHHHcCCCCCCCCCcccc----cc------cccccchh-hhHHHHHHHhhhhccc
Q 025599 45 QLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWA----EL------LGIGDFYY-ELGVQIVEICLATRPH 113 (250)
Q Consensus 45 ~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws----~~------lG~gdfy~-eLavqIvevC~~tr~~ 113 (250)
.|..........+.++|.+++.|. ..=| .|+....-+-. ++ -|...||. +||.+|++.+.+
T Consensus 162 ~la~~~~~~~~~l~~~~~~~~~f~---~~~G-~~~~~G~~~~~p~LA~TL~~IA~~G~~~FY~G~iA~~iv~~~~~---- 233 (366)
T 2dg5_A 162 ALADDLKTYGSEVLPNHENSKAIF---WKEG-EPLKKGDTLVQANLAKSLEMIAENGPDEFYKGTIAEQIAQEMQK---- 233 (366)
T ss_dssp HHHHHHHHTGGGTGGGSHHHHHHH---EETT-EECCTTCEECCHHHHHHHHHHHHHCTHHHHTSHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHhcCchHHHHhc---CCCC-eECCCCCEeeCHHHHHHHHHHHHhCchhccCCHHHHHHHHHHHH----
Confidence 344445555666777777766552 1112 24432211111 11 24567886 899999998874
Q ss_pred CCCceeHHHHHHH
Q 025599 114 NGGLINLQELCNL 126 (250)
Q Consensus 114 nGGli~l~el~~~ 126 (250)
+||+|+++||-..
T Consensus 234 ~GG~lt~~DLa~y 246 (366)
T 2dg5_A 234 NGGLITKEDLAAY 246 (366)
T ss_dssp TTCCCCHHHHHHC
T ss_pred cCCCCCHHHHhhC
Confidence 8999999999654
No 188
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=65.96 E-value=25 Score=25.48 Aligned_cols=33 Identities=9% Similarity=0.299 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCC
Q 025599 42 FRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (250)
Q Consensus 42 F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL 79 (250)
++.....|-..+.+.|..+ .|+.++.++|+.|-
T Consensus 7 l~~~F~~~D~d~~G~i~~~-----e~~~~l~~~~~~~~ 39 (145)
T 2bl0_B 7 IQECFQIFDKDNDGKVSIE-----ELGSALRSLGKNPT 39 (145)
T ss_dssp HHHHHHHHCTTCSSCEEGG-----GHHHHHHHTTCCCC
T ss_pred HHHHHHHhCCCCcCccCHH-----HHHHHHHHhCCCCC
Confidence 5556666767777777665 46677777887653
No 189
>2qmc_A GGT, gamma-glutamyltranspeptidase; NTN-hydrolase, transferase; HET: GTB; 1.55A {Helicobacter pylori} PDB: 2qm6_A* 3fnm_A* 2nqo_A
Probab=65.57 E-value=8.5 Score=35.70 Aligned_cols=32 Identities=28% Similarity=0.496 Sum_probs=25.8
Q ss_pred ccccchh-hhHHHHHHHhhhhcccCCCceeHHHHHHH
Q 025599 91 GIGDFYY-ELGVQIVEICLATRPHNGGLINLQELCNL 126 (250)
Q Consensus 91 G~gdfy~-eLavqIvevC~~tr~~nGGli~l~el~~~ 126 (250)
|...||. ++|.+|++... .+||+|+++||-..
T Consensus 225 G~~~FY~G~iA~~iv~~~~----~~GG~lt~~DLa~y 257 (377)
T 2qmc_A 225 GAKGFYQGQVAELIEKDMK----KNGGIITKEDLASY 257 (377)
T ss_dssp TTHHHHSHHHHHHHHHHHH----HTTCCCCHHHHHTC
T ss_pred CcHhhhCCHHHHHHHHHHH----HcCCCCCHHHHhhC
Confidence 4567885 89999999887 47999999999643
No 190
>2v36_A Gamma-glutamyltranspeptidase large chain; transferase, glutathione biosynthesis, gamma-glutamyl transferase, acyltransferase, zymogen; 1.85A {Bacillus subtilis} PDB: 3a75_A*
Probab=65.30 E-value=5 Score=37.20 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=26.4
Q ss_pred ccccchh-hhHHHHHHHhhhhcccCCCceeHHHHHHH
Q 025599 91 GIGDFYY-ELGVQIVEICLATRPHNGGLINLQELCNL 126 (250)
Q Consensus 91 G~gdfy~-eLavqIvevC~~tr~~nGGli~l~el~~~ 126 (250)
|...||. ++|.+|++.+.+ +||+|+++||-..
T Consensus 210 G~~~FY~G~iA~~iv~~~~~----~GG~lt~~DLa~y 242 (376)
T 2v36_A 210 GTDAFYKGKFAKTLSDTVQD----FGGSMTEKDLENY 242 (376)
T ss_dssp CTHHHHSHHHHHHHHHHHHH----TTCCCCHHHHHHC
T ss_pred CcccccCCHHHHHHHHHHHH----cCCCCCHHHHhhC
Confidence 4567886 899999998874 7999999999754
No 191
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=65.30 E-value=5.7 Score=30.50 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=30.7
Q ss_pred cHHHHHHhcCCChHHHHHHHHHHHHcCCceeec
Q 025599 193 TVDEVERRLSWTSGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 193 t~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
|..+|++.+|.+..-++.+|..|+.+|++-.-.
T Consensus 39 s~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 71 (125)
T 3neu_A 39 SVREMGVKLAVNPNTVSRAYQELERAGYIYAKR 71 (125)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEec
Confidence 799999999999999999999999999986653
No 192
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=65.14 E-value=9.4 Score=34.86 Aligned_cols=47 Identities=11% Similarity=0.065 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeec
Q 025599 179 HNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 179 ~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
+..+++.+...+++|.+++.+.+|.+..-|+..|..|+..|++-...
T Consensus 299 ~~~ll~~l~~~p~~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~~~~ 345 (373)
T 2qc0_A 299 SHELVQVIFEQPYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQ 345 (373)
T ss_dssp CHHHHHHHHHCSEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC-
T ss_pred HHHHHHHHHhCCcccHHHHHHHhCCCHHHHHHHHHHHHHCCcEEEec
Confidence 34577777778899999999999999999999999999999997664
No 193
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=65.08 E-value=5.4 Score=34.39 Aligned_cols=46 Identities=13% Similarity=0.163 Sum_probs=39.1
Q ss_pred HHHHHHh-CCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 182 ILELAQA-QGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 182 vLela~~-~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
||++... .+.+|..+|++.+|.++.-+-..|..|+..|++-.|...
T Consensus 11 IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~~~~~ 57 (260)
T 3r4k_A 11 LLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQVEGA 57 (260)
T ss_dssp HHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEECSSS
T ss_pred HHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCC
Confidence 4554443 578999999999999999999999999999999988543
No 194
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=64.91 E-value=6.9 Score=30.37 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=31.2
Q ss_pred Cc-cHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 191 FV-TVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 191 ~v-t~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
.+ |..+|++.+|.|..-++++|..|..+|++-.-
T Consensus 27 ~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~~ 61 (129)
T 2ek5_A 27 RVPSTNELAAFHRINPATARNGLTLLVEAGILYKK 61 (129)
T ss_dssp CBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEE
T ss_pred cCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEe
Confidence 45 99999999999999999999999999998665
No 195
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=64.83 E-value=15 Score=31.66 Aligned_cols=63 Identities=8% Similarity=0.188 Sum_probs=50.7
Q ss_pred CCccchhHHHHHHHHHh--CCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCCCCCCccee
Q 025599 172 PTELNKDHNQILELAQA--QGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYW 235 (250)
Q Consensus 172 p~El~~D~~~vLela~~--~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw 235 (250)
|-.|+..|-.||..... .+.+|+.+|.+.++.+..-.-..|+.|++.|++-+--...| ++.++
T Consensus 29 ~~~lt~~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~~~~~D-rR~~~ 93 (250)
T 1p4x_A 29 EVDMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRSKID-ERNTY 93 (250)
T ss_dssp TCSSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEEECSSS-TTSEE
T ss_pred hcCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEecCCCCC-CCeEE
Confidence 44678888888888775 35899999999999999999999999999999987544433 55444
No 196
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=64.70 E-value=21 Score=27.47 Aligned_cols=52 Identities=13% Similarity=0.197 Sum_probs=42.6
Q ss_pred chhHHHHHHHHHh-C-CCccHHHHHHhc-----CCChHHHHHHHHHHHHcCCceeecCC
Q 025599 176 NKDHNQILELAQA-Q-GFVTVDEVERRL-----SWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 176 ~~D~~~vLela~~-~-g~vt~~~L~~~l-----~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
+.-...||++... . +.+|+++|.+.+ +.+..=.-..|+.|+..|++-.-+-.
T Consensus 17 T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~ 75 (136)
T 1mzb_A 17 TLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNFD 75 (136)
T ss_dssp CHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECSS
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEEeC
Confidence 4445668888774 4 799999999888 89999999999999999999876544
No 197
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=64.40 E-value=14 Score=28.29 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=42.0
Q ss_pred hHHHHHHHHH-hCCCccHHHHHHhc-----CCChHHHHHHHHHHHHcCCceeecCC
Q 025599 178 DHNQILELAQ-AQGFVTVDEVERRL-----SWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 178 D~~~vLela~-~~g~vt~~~L~~~l-----~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
--..||++.. ..+.+|+++|.+.+ +.+..=.-..|+.|+..|++-.=+..
T Consensus 12 qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~~ 67 (131)
T 2o03_A 12 QRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHTD 67 (131)
T ss_dssp HHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEECT
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEeC
Confidence 3456788776 46799999999988 89999999999999999999876554
No 198
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A
Probab=64.30 E-value=43 Score=25.11 Aligned_cols=127 Identities=11% Similarity=0.155 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCCCCCCcccccccccccchhhhHHHHHHHhhhhcccCCCc
Q 025599 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGL 117 (250)
Q Consensus 38 qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~nGGl 117 (250)
++..++.....|-.++.+.|..+ +|+..++++....|.+|-.. ++..++..+..+-.....+ +.|-
T Consensus 4 ~~~~l~~~F~~~D~d~~G~i~~~-El~~~l~~~~~~~g~~~~~~------------~~~~~~~~~~~~~l~~~~D-~~g~ 69 (174)
T 1q80_A 4 WVQKMKTYFNRIDFDKDGAITRM-DFESMAERFAKESEMKAEHA------------KVLMDSLTGVWDNFLTAVA-GGKG 69 (174)
T ss_dssp HHHHHHHHHHHHCTTCSSEESHH-HHHHHHHHHHHHSSCCTTHH------------HHHHHHHHHHHHHTGGGTT-TTSC
T ss_pred HHHHHHHHHHhcCCCCCCcEeHH-HHHHHHHHHHHHhCCCCCcH------------HHHHHHHHHHHHHHHHhcC-CCCe
Confidence 45556666677777777777655 45444444444444776321 1112222222233333333 5677
Q ss_pred eeHHHHHHHHHhhcC---------------------CCCCCCCHHHHHHHHhhccccCCCeEEEEECCEEEEEecCCccc
Q 025599 118 INLQELCNLLRQRRK---------------------SNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELN 176 (250)
Q Consensus 118 i~l~el~~~v~k~R~---------------------~~~~~IS~~DI~rAik~L~~LG~g~~vi~ig~~~~v~svp~El~ 176 (250)
|+..|....+.+... .....||.+++.++++.+ | + +.+
T Consensus 70 i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~---g--~--------------~~~-- 128 (174)
T 1q80_A 70 IDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGML---G--L--------------DKT-- 128 (174)
T ss_dssp EEHHHHHHHHHHHTTSTTCHHHHHTHHHHHHHHHCTTSSSSBCHHHHHHHHHHH---T--C--------------CGG--
T ss_pred EcHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHc---C--C--------------CHH--
Confidence 777777665554321 112457777777777665 1 1 111
Q ss_pred hhHHHHHHHHH--hCCCccHHHHHHh
Q 025599 177 KDHNQILELAQ--AQGFVTVDEVERR 200 (250)
Q Consensus 177 ~D~~~vLela~--~~g~vt~~~L~~~ 200 (250)
+-..++..+. ..|.||.+++...
T Consensus 129 -~~~~~~~~~D~d~dg~i~~~ef~~~ 153 (174)
T 1q80_A 129 -MAPASFDAIDTNNDGLLSLEEFVIA 153 (174)
T ss_dssp -GHHHHHHHHCTTCSSSBCHHHHHHH
T ss_pred -HHHHHHHHhCCCCCceEeHHHHHHH
Confidence 1233454444 3688999988744
No 199
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=63.94 E-value=23 Score=27.49 Aligned_cols=36 Identities=11% Similarity=0.302 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCC
Q 025599 37 EQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVD 77 (250)
Q Consensus 37 ~qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVD 77 (250)
.++..++.....|-.++.+.|..+ .|..++.++|+.
T Consensus 36 ~~~~~l~~~F~~~D~d~~G~i~~~-----El~~~l~~~g~~ 71 (180)
T 3mse_B 36 NHIKYINELFYKLDTNHNGSLSHR-----EIYTVLASVGIK 71 (180)
T ss_dssp HHHHHHHHHHHHHCTTCSSSEEHH-----HHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCCCCCcCCHH-----HHHHHHHHcCCC
Confidence 445566677777777777777654 466777777765
No 200
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=63.66 E-value=13 Score=26.99 Aligned_cols=56 Identities=9% Similarity=0.024 Sum_probs=41.4
Q ss_pred HHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCCCCCCcceeecC
Q 025599 179 HNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWFPC 238 (250)
Q Consensus 179 ~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw~P~ 238 (250)
...||...-..|..|+.+|++.+|.+..-+...|..|... ++-..... ...||..+
T Consensus 29 Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~~g---r~~~y~l~ 84 (99)
T 2zkz_A 29 RLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNRQG---LEIYYSIN 84 (99)
T ss_dssp HHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEEET---TEEEEECC
T ss_pred HHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheEeC---cEEEEEEC
Confidence 3456633333467999999999999999999999999998 77655432 55666543
No 201
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=63.17 E-value=43 Score=24.75 Aligned_cols=93 Identities=14% Similarity=0.292 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhc-ccccccChhHHHHHHHHHHHcCCCCCCCCCcccccccccccchhhhHHHHHHHhhhhcccCCCc
Q 025599 39 LATFRSQLEDFARKH-KNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGL 117 (250)
Q Consensus 39 L~~F~~~L~~Fa~~h-~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~nGGl 117 (250)
+..++.....|-.++ .+.|..+ .|..++.++|..|-. + .+-+++...-..+.|.
T Consensus 17 ~~~l~~~F~~~D~~~~~G~i~~~-----e~~~~l~~~~~~~~~-----------------~---~~~~~~~~~D~~~~g~ 71 (161)
T 1dtl_A 17 KNEFKAAFDIFVLGAEDGSISTK-----ELGKVMRMLGQNPTP-----------------E---ELQEMIDEVDEDGSGT 71 (161)
T ss_dssp HHHHHHHHHHHTTTCGGGSBCHH-----HHHHHHHHTTCCCCH-----------------H---HHHHHHHHHCTTSSSS
T ss_pred HHHHHHHHHHHcCCCCCCcCcHH-----HHHHHHHHcCCCCCH-----------------H---HHHHHHHHhCCCCCCe
Confidence 444555566677777 7777643 577888888876521 0 1111122222234577
Q ss_pred eeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCC
Q 025599 118 INLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNG 156 (250)
Q Consensus 118 i~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~g 156 (250)
|+..|....+..........-+.+++..+.+.+-+=|+|
T Consensus 72 i~~~eF~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G 110 (161)
T 1dtl_A 72 VDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADG 110 (161)
T ss_dssp BCHHHHHHHHHHHHC-----CHHHHHHHHHHHHCTTCSS
T ss_pred EcHHHHHHHHHHHhcccccchHHHHHHHHHHHhCCCCCC
Confidence 888887776665421000122344455555555444444
No 202
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5
Probab=63.01 E-value=30 Score=25.97 Aligned_cols=82 Identities=7% Similarity=0.175 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCCCCCCcccccccccccchhhhHHHHHHHhhhhcc-cCCC
Q 025599 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRP-HNGG 116 (250)
Q Consensus 38 qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~-~nGG 116 (250)
|+..++.....|-.++.+.|..+ +|+..+..++.++|++|-.. ++ .+.+-.+ ...++-.....+ .+.|
T Consensus 5 ~~~~l~~~F~~~D~d~~G~i~~~-el~~~~~~~l~~~g~~~~~~------~~---~~l~~~~-~~~~~~lf~~~D~d~dg 73 (176)
T 1nya_A 5 ASDRLKKRFDRWDFDGNGALERA-DFEKEAQHIAEAFGKDAGAA------EV---QTLKNAF-GGLFDYLAKEAGVGSDG 73 (176)
T ss_dssp HHHHHHHHHHHCCSSCCSSBCSH-HHHHHHHHHHHHTSSCSSSH------HH---HHHHHHH-HHHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHHHHHcCCCCCcccHH-HHHHHHHHHHHHcCCCCCcH------HH---HHHHHHH-HHHHHHHHHHhCCCCCC
Confidence 45566667777777777778755 45555555788899887431 11 1111111 111122222223 3347
Q ss_pred ceeHHHHHHHHHhh
Q 025599 117 LINLQELCNLLRQR 130 (250)
Q Consensus 117 li~l~el~~~v~k~ 130 (250)
.|+..|....+.+.
T Consensus 74 ~i~~~Ef~~~~~~~ 87 (176)
T 1nya_A 74 SLTEEQFIRVTENL 87 (176)
T ss_dssp CBCHHHHHHHHHHH
T ss_pred eEcHHHHHHHHHHH
Confidence 88888888777664
No 203
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=62.21 E-value=14 Score=27.62 Aligned_cols=44 Identities=16% Similarity=0.300 Sum_probs=36.1
Q ss_pred HHHHHHhCCCcc--HHHHHHhc-CCChHHHHHHHHHHHHcCCceeecC
Q 025599 182 ILELAQAQGFVT--VDEVERRL-SWTSGRAIDALDILLEEGLAMVDDG 226 (250)
Q Consensus 182 vLela~~~g~vt--~~~L~~~l-~W~~~Ra~~~L~~l~~~Gl~WvD~q 226 (250)
||.... .|-.+ +.+|++.+ |.+..-.-..|..|++.|++=+...
T Consensus 32 IL~~L~-~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~ 78 (111)
T 3df8_A 32 IISVLG-NGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG 78 (111)
T ss_dssp HHHHHT-SSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES
T ss_pred HHHHHh-cCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec
Confidence 444443 46656 99999999 9999999999999999999977644
No 204
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Probab=62.14 E-value=9.3 Score=28.35 Aligned_cols=37 Identities=24% Similarity=0.394 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCC
Q 025599 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (250)
Q Consensus 38 qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL 79 (250)
++..++.....|-..+.+.|..+. |+.++.++|..|-
T Consensus 8 ~~~~l~~~F~~~D~d~~G~i~~~e-----l~~~l~~~g~~~~ 44 (151)
T 1w7j_B 8 QLEEFKEAFELFDRVGDGKILYSQ-----CGDVMRALGQNPT 44 (151)
T ss_dssp ---CHHHHHHHHCCSSSSEEESTT-----HHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHCCCCCCcCcHHH-----HHHHHHHcCCCCC
Confidence 344556666677777888887774 6677778888764
No 205
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=61.70 E-value=11 Score=29.22 Aligned_cols=39 Identities=15% Similarity=0.336 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhcccccccChhHHHHHH-HHHHHcCCCC
Q 025599 39 LATFRSQLEDFARKHKNDIRKNPTFRSQFH-EMCAKVGVDP 78 (250)
Q Consensus 39 L~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~-~mC~siGVDP 78 (250)
+..++.....|-.++.+.|..+ +|+..+. .++.++|.+|
T Consensus 19 ~~~l~~~F~~~D~d~~G~i~~~-El~~~~~~~~l~~~g~~~ 58 (195)
T 1qv0_A 19 IKRHKHMFDFLDINGNGKITLD-EIVSKASDDICAKLEATP 58 (195)
T ss_dssp HHHHHHHHHHHCTTCSSCBCHH-HHHHHHHHTHHHHTTCCH
T ss_pred HHHHHHHHhHcCCCCCCcCcHH-HHHHHHHHHHHHHcCCCc
Confidence 3444555556666666666544 2332222 3566677765
No 206
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=61.67 E-value=18 Score=30.21 Aligned_cols=47 Identities=28% Similarity=0.261 Sum_probs=40.1
Q ss_pred HHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecC
Q 025599 179 HNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDG 226 (250)
Q Consensus 179 ~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q 226 (250)
...||.+.. .|..|+.+|++.+|.+..-.-..|..|++.|++-....
T Consensus 17 rl~IL~~L~-~~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~~ 63 (202)
T 2p4w_A 17 RRRILFLLT-KRPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVE 63 (202)
T ss_dssp HHHHHHHHH-HSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEee
Confidence 445676665 46789999999999999999999999999999988654
No 207
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=61.23 E-value=14 Score=32.47 Aligned_cols=35 Identities=17% Similarity=0.107 Sum_probs=32.9
Q ss_pred hCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCce
Q 025599 188 AQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAM 222 (250)
Q Consensus 188 ~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~W 222 (250)
..+.+|+++|++.||-|..-.+.-|..|.++|++=
T Consensus 18 ~~~~~~~~ela~~l~vS~~tIrRdL~~l~~~G~v~ 52 (315)
T 2w48_A 18 YEQDMTQAQIARELGIYRTTISRLLKRGREQGIVT 52 (315)
T ss_dssp HTSCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 46779999999999999999999999999999994
No 208
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=61.20 E-value=10 Score=34.70 Aligned_cols=46 Identities=9% Similarity=0.154 Sum_probs=41.1
Q ss_pred HHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 179 HNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 179 ~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
...||++....|.+|..+|++.+|.++.-....+++|+++|++=--
T Consensus 41 ~~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~~~ 86 (429)
T 1z05_A 41 AGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHET 86 (429)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 3458888888899999999999999999999999999999997543
No 209
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=60.82 E-value=1.8 Score=34.52 Aligned_cols=44 Identities=18% Similarity=0.315 Sum_probs=39.5
Q ss_pred HHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCce
Q 025599 179 HNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAM 222 (250)
Q Consensus 179 ~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~W 222 (250)
...|+...+.++.+|..+|++.+|.|..-++++|..|..+|++-
T Consensus 15 ~~~Il~~l~~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli~ 58 (163)
T 2gqq_A 15 DRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQ 58 (163)
T ss_dssp HHHHHHHHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEE
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 45677766778889999999999999999999999999999986
No 210
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=59.96 E-value=3.2 Score=30.47 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=31.4
Q ss_pred CCc-cHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 190 GFV-TVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 190 g~v-t~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
..+ |+.+|++.+|.+..-++.+|..|..+|++-.-
T Consensus 33 ~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~ 68 (102)
T 1v4r_A 33 DTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSR 68 (102)
T ss_dssp SBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEE
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 445 99999999999999999999999999998554
No 211
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=59.53 E-value=9.6 Score=33.13 Aligned_cols=44 Identities=25% Similarity=0.253 Sum_probs=36.3
Q ss_pred HHHHHHh-CCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeec
Q 025599 182 ILELAQA-QGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 182 vLela~~-~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
||++... .+.+|..+|++.+|.++.-+...|..|+..|++-.|.
T Consensus 35 IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~~~ 79 (275)
T 3mq0_A 35 ILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTELDLLARSA 79 (275)
T ss_dssp HHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEECT
T ss_pred HHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECC
Confidence 5665543 4579999999999999999999999999999999884
No 212
>2nlz_A Cephalosporin acylase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.70A {Bacillus halodurans} SCOP: d.153.1.6
Probab=59.43 E-value=13 Score=36.06 Aligned_cols=32 Identities=28% Similarity=0.387 Sum_probs=26.2
Q ss_pred ccccchh-hhHHHHHHHhhhhcccCCCceeHHHHHHH
Q 025599 91 GIGDFYY-ELGVQIVEICLATRPHNGGLINLQELCNL 126 (250)
Q Consensus 91 G~gdfy~-eLavqIvevC~~tr~~nGGli~l~el~~~ 126 (250)
|...||. +||.+|++.+.+ +||+|+++||-..
T Consensus 215 G~~~FY~G~iA~~iv~~~~~----~GG~lt~~DLa~y 247 (547)
T 2nlz_A 215 NGESFYRGELADQIHAFFDK----HGGYLTKEDLACY 247 (547)
T ss_dssp TTHHHHHSHHHHHHHHHHHH----TTCCCCHHHHHTC
T ss_pred CchhhcCCHHHHHHHHHHHh----cCCCCCHHHHhhC
Confidence 4457887 899999998874 7999999999643
No 213
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=59.30 E-value=15 Score=29.61 Aligned_cols=40 Identities=18% Similarity=0.274 Sum_probs=34.1
Q ss_pred HHHHHh--CCCccHHHHHHhcCCChHHHHHHHHHHHHcCCce
Q 025599 183 LELAQA--QGFVTVDEVERRLSWTSGRAIDALDILLEEGLAM 222 (250)
Q Consensus 183 Lela~~--~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~W 222 (250)
+.+|.. .+.+|.++|++.++.+..-.+.+|..|.+.|++=
T Consensus 34 ~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~ 75 (159)
T 3lwf_A 34 LELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVK 75 (159)
T ss_dssp HHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEE
Confidence 344542 4579999999999999999999999999999954
No 214
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=59.22 E-value=20 Score=31.80 Aligned_cols=52 Identities=25% Similarity=0.397 Sum_probs=46.7
Q ss_pred ccchhHHHHHHHHHh-CCC------ccHHHHHHhcCCChHHHHHHHHHHHHcCCceeec
Q 025599 174 ELNKDHNQILELAQA-QGF------VTVDEVERRLSWTSGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 174 El~~D~~~vLela~~-~g~------vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
.++.|...||+..+. .|+ -+++++.+.+|.|+.-+|.||-.|.++|++-+++
T Consensus 221 ~~~~~a~~il~~L~~~~G~l~~~DkS~pe~I~~~f~~SK~~FKrAiG~L~K~~~I~~~~ 279 (285)
T 3go5_A 221 MLENDAQMILTYLESNGGFMTLNDKSSPDDIKATFGISKGQFKKALGGLMKAGKIKQDQ 279 (285)
T ss_dssp CCCHHHHHHHHHHHHTTTEESCCTTSCHHHHHHHHSSCHHHHHHHHHHHHHTTCEEEET
T ss_pred ccchHHHHHHHHHHhcCCeeccCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCcEEEcC
Confidence 688999999999885 444 5799999999999999999999999999998886
No 215
>3jtn_A YPBH, adapter protein MECA 2; adaptor protein, competence, sporulation, protein binding; 2.09A {Bacillus subtilis} PDB: 3jto_A
Probab=58.58 E-value=49 Score=23.94 Aligned_cols=60 Identities=10% Similarity=0.097 Sum_probs=40.2
Q ss_pred CHHHHHHHHhhcccc-CCCeEEEEECCEEEEEecCCccchhHHHHHHHHHh---CCCccHHHHHH
Q 025599 139 SEDDCLRAISKLKVL-GNGYEVISVGKKKLVRSVPTELNKDHNQILELAQA---QGFVTVDEVER 199 (250)
Q Consensus 139 S~~DI~rAik~L~~L-G~g~~vi~ig~~~~v~svp~El~~D~~~vLela~~---~g~vt~~~L~~ 199 (250)
+-|||+++++.|.++ ...=.+-+.+|++|+...+.+.+.+ ..++.++.+ ...+|..-|.+
T Consensus 9 ~~edvI~~a~~l~~~~~~~s~LYk~~~~YYL~l~~~~~~~~-~~~~a~l~EYg~~s~~t~~~L~E 72 (91)
T 3jtn_A 9 SFEDIIQLSESLQRIGITGGTVYHYDGQYFLSLEDLGSHTA-EGVVAVLAEYGNPTTLTIYRLQE 72 (91)
T ss_dssp SHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEECCCTTCCH-HHHHHHHHHHCEECCCCHHHHHH
T ss_pred CHHHHHHHHHHccccCCCCceeEEECCEEEEEEeeCCCChH-HHHHHHHHHhCCCCcccHHHHHh
Confidence 568999999999765 4555677789999998765554444 555555443 34456655554
No 216
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A
Probab=58.38 E-value=53 Score=24.22 Aligned_cols=40 Identities=18% Similarity=0.311 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCC
Q 025599 39 LATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (250)
Q Consensus 39 L~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL 79 (250)
...++.....|=.++.+.|..+ +|+..++.++.++|.+|-
T Consensus 3 ~~~l~~~F~~~D~d~dG~i~~~-E~~~~l~~~~~~~g~~~~ 42 (166)
T 3akb_A 3 ERRIAARFTTFDQDGNGHIDRS-DFSGAAKAMLAEFGVAAR 42 (166)
T ss_dssp HHHHHHHHHHHCTTCSSEECHH-HHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHhHHcCCCCCCcCHH-HHHHHHHHHHHHcCCCCC
Confidence 4455666666666777777644 455556666777888764
No 217
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=58.36 E-value=8.9 Score=32.81 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=32.3
Q ss_pred CCCc-cHHHHHHhcCCChHHHHHHHHHHHHcCCcee
Q 025599 189 QGFV-TVDEVERRLSWTSGRAIDALDILLEEGLAMV 223 (250)
Q Consensus 189 ~g~v-t~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~Wv 223 (250)
+..+ |..+|++.+|.+..-++.||..|+.+|++-.
T Consensus 33 g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~ 68 (248)
T 3f8m_A 33 GDPFPAEREIAEQFEVARETVRQALRELLIDGRVER 68 (248)
T ss_dssp TCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 3456 9999999999999999999999999999988
No 218
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Probab=58.35 E-value=32 Score=26.30 Aligned_cols=94 Identities=13% Similarity=0.225 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHc-CCCCCCCCCcccccccccccchhhhHHHHHHHhhhhcccCCC
Q 025599 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKV-GVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGG 116 (250)
Q Consensus 38 qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~si-GVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~nGG 116 (250)
|+..++.....|- ++.+.|..+ .|+.++.++ |.+|..... .+-.+...++...+ -..+.|
T Consensus 2 ~~~~l~~~F~~~D-d~~G~i~~~-----el~~~l~~~~g~~~~~~~~----------~~~~~~~~~l~~~~---D~~~~g 62 (173)
T 1alv_A 2 EVRQFRRLFAQLA-GDDMEVSAT-----ELMNILNKVVTRHPDLKTD----------GFGIDTCRSMVAVM---DSDTTG 62 (173)
T ss_dssp HHHHHHHHHHHHH-GGGTSBCHH-----HHHHHHHHHHHTCSTTCCS----------CCCHHHHHHHHHHH---CTTCSS
T ss_pred chhHHHHHHHHHh-CCCCCcCHH-----HHHHHHHHhhhcccccccC----------CCCHHHHHHHHHHH---cCCCCC
Confidence 4566777778888 888888643 577788787 877642110 01111222222221 112336
Q ss_pred ceeHHHHHHHHHhhc----------CCCCCCCCHHHHHHHHhhc
Q 025599 117 LINLQELCNLLRQRR----------KSNREAVSEDDCLRAISKL 150 (250)
Q Consensus 117 li~l~el~~~v~k~R----------~~~~~~IS~~DI~rAik~L 150 (250)
-|+..|....+.+.. ......||.+++.++++.+
T Consensus 63 ~i~~~eF~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~ 106 (173)
T 1alv_A 63 KLGFEEFKYLWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAA 106 (173)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHHCTTCCSSBCTTTHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHc
Confidence 677777665443210 1113468888888877664
No 219
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=58.26 E-value=9.2 Score=31.82 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=33.2
Q ss_pred CCCc-cHHHHHHhcCCChHHHHHHHHHHHHcCCceeec
Q 025599 189 QGFV-TVDEVERRLSWTSGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 189 ~g~v-t~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
+..+ |..+|++.||-|..-.++||..|+.+|++-+-.
T Consensus 28 G~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~~~ 65 (239)
T 1hw1_A 28 GTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQH 65 (239)
T ss_dssp TSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEec
Confidence 3456 899999999999999999999999999987763
No 220
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A
Probab=58.16 E-value=24 Score=27.88 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCC
Q 025599 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDP 78 (250)
Q Consensus 38 qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDP 78 (250)
++..++.....|-.++.+.|..+ .|..++.++|+.|
T Consensus 50 ~~~~l~~~F~~~D~d~~G~i~~~-----El~~~l~~~g~~~ 85 (191)
T 3k21_A 50 DVEKLKSTFLVLDEDGKGYITKE-----QLKKGLEKDGLKL 85 (191)
T ss_dssp HHHHHHHHHHHHCTTCSSEECHH-----HHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHCCCCCCCCcHH-----HHHHHHHHcCCCc
Confidence 44556666666766777777654 5667777788764
No 221
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=58.06 E-value=16 Score=28.71 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=33.7
Q ss_pred HHHHHh--CCCccHHHHHHhcCCChHHHHHHHHHHHHcCCce
Q 025599 183 LELAQA--QGFVTVDEVERRLSWTSGRAIDALDILLEEGLAM 222 (250)
Q Consensus 183 Lela~~--~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~W 222 (250)
+.++.. .+.+|.++|++.++.+..-.+.+|..|.+.|++-
T Consensus 18 ~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~ 59 (143)
T 3t8r_A 18 ISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIR 59 (143)
T ss_dssp HHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEE
Confidence 344542 3579999999999999999999999999999943
No 222
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=58.05 E-value=9.1 Score=32.42 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=33.9
Q ss_pred CCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeec
Q 025599 189 QGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 189 ~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
+..++..+|++.||-|..-.+++|..|..+|++-+-.
T Consensus 47 G~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~~ 83 (237)
T 3c7j_A 47 GTALRQQELATLFGVSRMPVREALRQLEAQSLLRVET 83 (237)
T ss_dssp TCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred cCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 5678999999999999999999999999999987653
No 223
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=57.96 E-value=13 Score=29.28 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=34.1
Q ss_pred HHHHH-hCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCce
Q 025599 183 LELAQ-AQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAM 222 (250)
Q Consensus 183 Lela~-~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~W 222 (250)
+.++. ..+.+|.++|++.++.+..-.+..|..|.+.|++-
T Consensus 21 ~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~ 61 (149)
T 1ylf_A 21 SILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVY 61 (149)
T ss_dssp HHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 34454 34689999999999999999999999999999954
No 224
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=57.37 E-value=2.2 Score=38.46 Aligned_cols=49 Identities=14% Similarity=0.056 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCce
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAM 222 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~W 222 (250)
++..-|..+|......+.+|..+|++.+|-++.-.+.-|+.|+++|++=
T Consensus 17 ~~~~r~~~iL~~l~~~~~~t~~eLa~~l~vs~~Tv~r~l~~Le~~Glv~ 65 (345)
T 2o0m_A 17 DVLQERFQILRNIYWMQPIGRRSLSETMGITERVLRTETDVLKQLNLIE 65 (345)
T ss_dssp -------------------------------------------------
T ss_pred HhhHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4556677788888888899999999999999999999999999999984
No 225
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=57.30 E-value=11 Score=31.92 Aligned_cols=36 Identities=8% Similarity=0.184 Sum_probs=32.3
Q ss_pred CCCc-cHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 189 QGFV-TVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 189 ~g~v-t~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
+..+ |..+|++.+|.+..-++++|..|+.+|++-.-
T Consensus 26 g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~~ 62 (239)
T 3bwg_A 26 GDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQV 62 (239)
T ss_dssp TCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEe
Confidence 3456 99999999999999999999999999998654
No 226
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=57.02 E-value=35 Score=31.03 Aligned_cols=102 Identities=13% Similarity=0.208 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCCCCCCcccccccccccchhhhHHHHHHHhhhhccc-CC
Q 025599 37 EQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPH-NG 115 (250)
Q Consensus 37 ~qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~-nG 115 (250)
.+++.++..+..|=.++.+.|..+ +|...+..++..+|.+|-... .+....-++-.....+. +.
T Consensus 332 ~~~~~l~~~F~~~D~d~dG~I~~~-El~~~l~~~~~~~g~~~~~~~--------------~~~~~~~~~~~~~~~D~d~~ 396 (484)
T 3nyv_A 332 DETKELTAIFHKMDKNGDGQLDRA-ELIEGYKELMRMKGQDASMLD--------------ASAVEHEVDQVLDAVDFDKN 396 (484)
T ss_dssp HHHHHHHHHHHHHCTTCSSEEEHH-HHHHHHHHHHC----CGGGCS--------------HHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHhCcCCCceEeHH-HHHHHHHHHhhhccccccccc--------------ccccHHHHHHHHHHhCCCCC
Confidence 455667777777777778888765 566666788888888875321 11122222222222333 35
Q ss_pred CceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCe
Q 025599 116 GLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGY 157 (250)
Q Consensus 116 Gli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~g~ 157 (250)
|.|+.+|....+.... ...+++++.+|.+.+-.=|+|+
T Consensus 397 g~i~~~Ef~~~~~~~~----~~~~~~~~~~~F~~~D~d~dG~ 434 (484)
T 3nyv_A 397 GYIEYSEFVTVAMDRK----TLLSRERLERAFRMFDSDNSGK 434 (484)
T ss_dssp SEEEHHHHHHHHHHHH----HHHHHHHHHHHHHHHCTTCCSE
T ss_pred CeEeHHHHHHHHHhcc----ccCcHHHHHHHHHHHCCCCCCc
Confidence 8999999887766542 2356677777777776656654
No 227
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=56.81 E-value=70 Score=30.47 Aligned_cols=125 Identities=14% Similarity=0.071 Sum_probs=77.7
Q ss_pred hhhhHHHHHHHhhhhcc-------cCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEE---C-C
Q 025599 96 YYELGVQIVEICLATRP-------HNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISV---G-K 164 (250)
Q Consensus 96 y~eLavqIvevC~~tr~-------~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~g~~vi~i---g-~ 164 (250)
|-+.+-+|++.++.-.. ...--|++.++.+.|.+ ...++.+.|.+-++.|..=..+|-- .. | |
T Consensus 259 ~~~~a~~V~~~lL~~~e~~~~~~~~~s~~is~~~I~~~l~~-----~~~l~~~~l~~~L~lL~~~~~~fv~-~~g~~g~g 332 (534)
T 2xub_A 259 MDQTSSEIVRTMLRMSEITTSSSAPFTQPLSSNEIFRSLPV-----GYNISKQVLDQYLTLLADDPLEFVG-KSGDSGGG 332 (534)
T ss_dssp SCHHHHHHHHHHHHTTTTTSCTTCSBCCCEEHHHHHHTSCT-----TCCCCHHHHHHHHHHHHSCTTCCEE-ECCCCSSC
T ss_pred cCcHHHHHHHHHHHHhhccCCccccCCCcccHHHHHHHcCC-----cccccHHHHHHHHHHHhCCcHHhhh-ccccCCCc
Confidence 34567788888884211 34557899999888832 3578999999999999753344532 22 2 3
Q ss_pred EEEEEecCC---------------ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecC
Q 025599 165 KKLVRSVPT---------------ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDG 226 (250)
Q Consensus 165 ~~~v~svp~---------------El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q 226 (250)
.+.|-.... -+...-..|+.+....|.++.++|++..+.+.--++..|-.|.++|++=+=+-
T Consensus 333 ~y~V~~~~~~~~lr~~~ie~ii~~~~G~~a~RI~r~L~~~~~l~d~~ia~~a~i~~k~vR~~Ly~L~~~g~v~~qev 409 (534)
T 2xub_A 333 MYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQKKHIEQKQVEDFAMIPAKEAKDMLYKMLSENFMSLQEI 409 (534)
T ss_dssp EEEEBHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHC---CHHHHHHHHCSCHHHHHHHHHHHHHTTCC-----
T ss_pred eEEEeHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCeEEEEc
Confidence 333322110 01112222344444579999999999999999999999999999999866543
No 228
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=56.31 E-value=18 Score=29.40 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=38.3
Q ss_pred HHHHHHHHHh-CCCccHHHHHHhcCCChHHHHHHHHHHHHcCC-cee
Q 025599 179 HNQILELAQA-QGFVTVDEVERRLSWTSGRAIDALDILLEEGL-AMV 223 (250)
Q Consensus 179 ~~~vLela~~-~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl-~Wv 223 (250)
...+|++.+. .+++|..+|++.+|-|..-++..|..|...|+ +-.
T Consensus 23 ~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~ 69 (187)
T 1j5y_A 23 LKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 4457777775 56799999999999999999999999999998 543
No 229
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A
Probab=56.21 E-value=9.6 Score=28.18 Aligned_cols=31 Identities=19% Similarity=0.431 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCC
Q 025599 43 RSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDP 78 (250)
Q Consensus 43 ~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDP 78 (250)
+.....|-.++.+.|..+ .|..++.++|+.|
T Consensus 7 ~~~F~~~D~d~~G~i~~~-----el~~~l~~~g~~~ 37 (148)
T 1m45_A 7 KDIFTLFDKKGQGAIAKD-----SLGDYLRAIGYNP 37 (148)
T ss_dssp TTCHHHHCTTCCSEEEGG-----GHHHHHHHTTCCC
T ss_pred HHHHHHHCCCCCCCCCHH-----HHHHHHHHhCCCC
Confidence 334445555666666654 3556677777765
No 230
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=55.93 E-value=62 Score=26.58 Aligned_cols=142 Identities=14% Similarity=0.138 Sum_probs=79.5
Q ss_pred ccChhHHHHHHHHHHHcCCCCCCCCCcccccccccccchhhhHHHHHHHhhhhcccCCCceeHHHHHHHHHhhcCC--CC
Q 025599 58 RKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKS--NR 135 (250)
Q Consensus 58 ~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~nGGli~l~el~~~v~k~R~~--~~ 135 (250)
--.|.++..|.+.+...+.|.-. . .++| +=|++++.-+ . ...-=+|+=---...+.+.-+. -.
T Consensus 11 apy~~l~~~~~~i~~e~~~~i~i-----~-----~~~l--~~~v~~a~~~-~--~~~dVIISRGgta~~lr~~~~iPVV~ 75 (196)
T 2q5c_A 11 SQNENLLNLFPKLALEKNFIPIT-----K-----TASL--TRASKIAFGL-Q--DEVDAIISRGATSDYIKKSVSIPSIS 75 (196)
T ss_dssp ESCHHHHHHHHHHHHHHTCEEEE-----E-----ECCH--HHHHHHHHHH-T--TTCSEEEEEHHHHHHHHTTCSSCEEE
T ss_pred EccHHHHHHHHHHHhhhCCceEE-----E-----ECCH--HHHHHHHHHh-c--CCCeEEEECChHHHHHHHhCCCCEEE
Confidence 34567777777777766553110 0 2343 3355555554 2 1111244444444555553221 01
Q ss_pred CCCCHHHHHHHHhhccccCCCeEEEEECCE----------------EEEEecCCccchhHHHHHHHHHh-----CCCccH
Q 025599 136 EAVSEDDCLRAISKLKVLGNGYEVISVGKK----------------KLVRSVPTELNKDHNQILELAQA-----QGFVTV 194 (250)
Q Consensus 136 ~~IS~~DI~rAik~L~~LG~g~~vi~ig~~----------------~~v~svp~El~~D~~~vLela~~-----~g~vt~ 194 (250)
-.+|--||++|++..+..+.-+-++.+++. .+.-..|.|+ ...+.++.+. -|..++
T Consensus 76 I~~s~~Dil~al~~a~~~~~kIavvg~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~---~~~i~~l~~~G~~vvVG~~~~ 152 (196)
T 2q5c_A 76 IKVTRFDTMRAVYNAKRFGNELALIAYKHSIVDKHEIEAMLGVKIKEFLFSSEDEI---TTLISKVKTENIKIVVSGKTV 152 (196)
T ss_dssp ECCCHHHHHHHHHHHGGGCSEEEEEEESSCSSCHHHHHHHHTCEEEEEEECSGGGH---HHHHHHHHHTTCCEEEECHHH
T ss_pred EcCCHhHHHHHHHHHHhhCCcEEEEeCcchhhHHHHHHHHhCCceEEEEeCCHHHH---HHHHHHHHHCCCeEEECCHHH
Confidence 379999999999999999887888887542 1111112222 2334444442 256677
Q ss_pred HHHHHhcCCC-------hHHHHHHHHHHHH
Q 025599 195 DEVERRLSWT-------SGRAIDALDILLE 217 (250)
Q Consensus 195 ~~L~~~l~W~-------~~Ra~~~L~~l~~ 217 (250)
-.+++++|.. .+=.+.+|++.++
T Consensus 153 ~~~A~~~Gl~~vli~sg~eSI~~Ai~eA~~ 182 (196)
T 2q5c_A 153 TDEAIKQGLYGETINSGEESLRRAIEEALN 182 (196)
T ss_dssp HHHHHHTTCEEEECCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEEecCHHHHHHHHHHHHH
Confidence 8888888864 6666677766543
No 231
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=55.92 E-value=21 Score=28.17 Aligned_cols=52 Identities=12% Similarity=0.215 Sum_probs=42.6
Q ss_pred chhHHHHHHHHHh-CCCccHHHHHHhc-----CCChHHHHHHHHHHHHcCCceeecCC
Q 025599 176 NKDHNQILELAQA-QGFVTVDEVERRL-----SWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 176 ~~D~~~vLela~~-~g~vt~~~L~~~l-----~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
+.-...||++... .+.+|+++|.+.+ +.+..=.-..|+.|+..|++-.=+..
T Consensus 26 T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~ 83 (150)
T 2xig_A 26 SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLETS 83 (150)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEEeC
Confidence 4445668888764 6799999999888 79999999999999999999765544
No 232
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=55.50 E-value=24 Score=27.42 Aligned_cols=61 Identities=13% Similarity=0.120 Sum_probs=46.2
Q ss_pred cchhHHHHHHHHHh-CCCccHHHHHHhc-----CCChHHHHHHHHHHHHcCCceeecCCCCCCcceeec
Q 025599 175 LNKDHNQILELAQA-QGFVTVDEVERRL-----SWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWFP 237 (250)
Q Consensus 175 l~~D~~~vLela~~-~g~vt~~~L~~~l-----~W~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw~P 237 (250)
++.-...||++... .+.+|+++|.+.+ +.+..=.-..|+.|+..|++-.-+.. + ...+|.+
T Consensus 12 ~T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~-~-g~~~Y~~ 78 (139)
T 3mwm_A 12 ATRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTA-E-GESVYRR 78 (139)
T ss_dssp HHHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECT-T-SCEEEEC
T ss_pred cCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcC-C-CceEEEE
Confidence 34445668887764 6899999999877 68999999999999999999776554 2 2344443
No 233
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=55.37 E-value=17 Score=32.59 Aligned_cols=43 Identities=16% Similarity=0.282 Sum_probs=37.3
Q ss_pred HHHHHHHHHh--CCCccHHHHHHhcCCChHHHHHHHHHHHHcCCc
Q 025599 179 HNQILELAQA--QGFVTVDEVERRLSWTSGRAIDALDILLEEGLA 221 (250)
Q Consensus 179 ~~~vLela~~--~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~ 221 (250)
..++|++... ..++|.++|++.+|.|..-....|..|.++|+.
T Consensus 5 ~~~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~~G~~ 49 (323)
T 3rkx_A 5 SQDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKLEGCK 49 (323)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHhcCCe
Confidence 3468888753 459999999999999999999999999999983
No 234
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=55.18 E-value=11 Score=31.99 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=30.6
Q ss_pred CCc-cHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 190 GFV-TVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 190 g~v-t~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
..+ |..+|++.+|.|..-++.+|..|+.+|++=.-
T Consensus 31 ~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 66 (236)
T 3edp_A 31 MLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRK 66 (236)
T ss_dssp C--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 456 99999999999999999999999999997654
No 235
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=54.86 E-value=48 Score=24.30 Aligned_cols=55 Identities=9% Similarity=0.125 Sum_probs=46.8
Q ss_pred HHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCCCCCCcceeecC
Q 025599 181 QILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWFPC 238 (250)
Q Consensus 181 ~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw~P~ 238 (250)
.|..+....|..|+.+|.+..|.+..-.-.+|-.|.+|+.+-++... ...|..++
T Consensus 12 ~VW~~L~~~~~~s~~el~k~t~l~d~el~lAIGWLaREdKI~~~~~~---~~l~v~L~ 66 (82)
T 2l02_A 12 KVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIERKN---GLIEIYNE 66 (82)
T ss_dssp HHHHHHHHCCSBCHHHHHHHHTCCHHHHHHHHHHHHTTTSEEEEEET---TEEEEEEG
T ss_pred HHHHHHhccCCCCHHHHHHHhCCCHHHHHHHHHHHhccCceeEEeeC---CEEEEEEc
Confidence 36667777789999999999999999999999999999999999865 45666554
No 236
>3r07_C Putative lipoate-protein ligase A subunit 2; adenylate-forming enzyme, BI-partite, ATP-binding, transferase; 2.70A {Thermoplasma acidophilum dsm 1728}
Probab=54.33 E-value=16 Score=26.91 Aligned_cols=51 Identities=16% Similarity=0.265 Sum_probs=34.3
Q ss_pred ccchhh--hHHHHHHHhhhhcccCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHh
Q 025599 93 GDFYYE--LGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAIS 148 (250)
Q Consensus 93 gdfy~e--LavqIvevC~~tr~~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik 148 (250)
|||+-+ -++.-+|-.+.-.+.+ ++...++.+... +....-+|++||..|++
T Consensus 37 GDFf~~p~~~i~~le~~L~G~~~~----~i~~~l~~~~~~-~~~~~g~~~edi~~ai~ 89 (91)
T 3r07_C 37 GDFFMFPEDSINRLEDMLRGSSIE----KINDIIRDFYNQ-GVITPGVEPEDFIQALR 89 (91)
T ss_dssp EEBCCBSTTHHHHHHHHHTTSBTT----SHHHHHHHHHTT-TCBCTTCCTTHHHHHHC
T ss_pred cccCCCcchhHHHHHHHHCCCCHH----HHHHHHHhhhcc-CceEcCCCHHHHHHHHh
Confidence 799965 4466666666666665 566666555432 34456799999999984
No 237
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Probab=53.82 E-value=19 Score=27.69 Aligned_cols=40 Identities=10% Similarity=0.196 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHhcccccccChhHHHHHH-HHHHHcCCCC
Q 025599 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFH-EMCAKVGVDP 78 (250)
Q Consensus 38 qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~-~mC~siGVDP 78 (250)
++..++.....|-.++.+.|..+ +|+..+. ..+.++|.+|
T Consensus 14 ~~~~l~~~F~~~D~d~~G~i~~~-El~~~~~~~~l~~~g~~~ 54 (191)
T 1uhk_A 14 WIGRHKHMFNFLDVNHNGKISLD-EMVYKASDIVINNLGATP 54 (191)
T ss_dssp HHHHHHHHHHHHCTTCCSEEEHH-HHHHHHHHHHHHTSCCCH
T ss_pred HHHHHHHHHhhccCCCCCcCcHH-HHHHHHHHHHHHHcCCCc
Confidence 34445555556666666666543 2221111 4556677664
No 238
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=53.75 E-value=49 Score=22.41 Aligned_cols=84 Identities=12% Similarity=0.213 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCCCCCCcccccccccccchhhhHHHHHHHhhhhcccCCCce
Q 025599 39 LATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLI 118 (250)
Q Consensus 39 L~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~nGGli 118 (250)
.+.++.....|-.++.+-|..+ .|+.++.++|..+-. + ++-++....-..+.|.|
T Consensus 8 ~~~l~~~F~~~D~d~~G~i~~~-----el~~~l~~~g~~~~~-----------------~---~~~~l~~~~d~~~dg~i 62 (92)
T 2kn2_A 8 EEELKEAFKVFDKDQNGYISAS-----ELRHVMINLGEKLTD-----------------E---EVEQMIKEADLDGDGQV 62 (92)
T ss_dssp HHHHHHHHHHHCTTCSSEECHH-----HHHHHHHHTTCCCCH-----------------H---HHHHHHHHHCSSCCSSE
T ss_pred HHHHHHHHHHHCCCCCCeEcHH-----HHHHHHHHhCCCCCH-----------------H---HHHHHHHHhCCCCCCcE
Confidence 3445566666767777777644 567788888864311 0 11122222223445899
Q ss_pred eHHHHHHHHHhhcCCCCCCCCHHHHHHHHh
Q 025599 119 NLQELCNLLRQRRKSNREAVSEDDCLRAIS 148 (250)
Q Consensus 119 ~l~el~~~v~k~R~~~~~~IS~~DI~rAik 148 (250)
+..|.+..+.+.++. ....+.+++.+|.+
T Consensus 63 ~~~eF~~~~~~~~~~-~~~~~~~~l~~aF~ 91 (92)
T 2kn2_A 63 NYEEFVKMMMTVRGG-GGGNGWSRLRRKFS 91 (92)
T ss_dssp EHHHHHHHHHHHTTT-CCCHHHHHHHHHHT
T ss_pred eHHHHHHHHHhccCC-CCCchHHHHHHHhc
Confidence 999999888876542 12345577877754
No 239
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=53.60 E-value=46 Score=26.86 Aligned_cols=44 Identities=23% Similarity=0.255 Sum_probs=36.9
Q ss_pred HHHHHHHh--CCCccHHHHHHhcC-CChHHHHHHHHHHHHcCCceee
Q 025599 181 QILELAQA--QGFVTVDEVERRLS-WTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 181 ~vLela~~--~g~vt~~~L~~~l~-W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
.||++.-. .+.+|+.+|.+.++ .+..=....|+.|+..|++-.=
T Consensus 33 ~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~ 79 (151)
T 3u1d_A 33 DVLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDRGIVEKI 79 (151)
T ss_dssp HHHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEe
Confidence 45665543 46799999999999 9999999999999999999853
No 240
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=53.14 E-value=12 Score=30.96 Aligned_cols=37 Identities=30% Similarity=0.241 Sum_probs=33.6
Q ss_pred CCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeec
Q 025599 189 QGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 189 ~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
+-.+|..+|++.||-|..-.+++|..|..+|++-+-.
T Consensus 33 G~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~ 69 (218)
T 3sxy_A 33 GEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVVP 69 (218)
T ss_dssp TCEECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEET
T ss_pred CCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 4568999999999999999999999999999997663
No 241
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}
Probab=52.95 E-value=9.3 Score=30.28 Aligned_cols=36 Identities=17% Similarity=0.449 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCC
Q 025599 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (250)
Q Consensus 38 qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL 79 (250)
++..++.....|-.++.+.|..+ .|..+ .++|++|.
T Consensus 27 ~~~~l~~~F~~~D~d~dG~I~~~-----El~~~-~~lg~~~~ 62 (202)
T 2bec_A 27 SLLRLHHRFRALDRNKKGYLSRM-----DLQQI-GALAVNPL 62 (202)
T ss_dssp HHHHHHHHHHHHCSSCSSCCCHH-----HHHTC-HHHHHSTT
T ss_pred HHHHHHHHHHHHCCCCCCCcCHH-----HHHHH-HhcCCCcc
Confidence 44455555666666777777643 44455 56666653
No 242
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=52.77 E-value=11 Score=32.07 Aligned_cols=35 Identities=20% Similarity=0.122 Sum_probs=31.4
Q ss_pred CCc-cHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 190 GFV-TVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 190 g~v-t~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
..+ |..+|++.+|.+..-++.+|..|+.+|++-.-
T Consensus 32 ~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 67 (243)
T 2wv0_A 32 MPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRL 67 (243)
T ss_dssp CBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEe
Confidence 455 89999999999999999999999999997543
No 243
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=52.68 E-value=14 Score=29.67 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=33.2
Q ss_pred HHHH-hCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCc
Q 025599 184 ELAQ-AQGFVTVDEVERRLSWTSGRAIDALDILLEEGLA 221 (250)
Q Consensus 184 ela~-~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~ 221 (250)
.++. ..+.+|.++|++.++.+..-.+.+|..|.+.|++
T Consensus 20 ~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv 58 (162)
T 3k69_A 20 YLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYL 58 (162)
T ss_dssp HHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSS
T ss_pred HHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 3444 3568999999999999999999999999999985
No 244
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=52.65 E-value=17 Score=33.40 Aligned_cols=58 Identities=10% Similarity=0.098 Sum_probs=45.0
Q ss_pred HHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCCCCCCcceeecCcc
Q 025599 181 QILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWFPCAS 240 (250)
Q Consensus 181 ~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw~P~l~ 240 (250)
.++++....+++|.+.+.+.++.+..-|+..|..|++.|++=.-.. +....|=+|.++
T Consensus 301 ~ll~~l~~~p~~t~~~~~~~~~~S~~TA~r~L~~L~e~GiL~~~~~--gR~~~y~~~~~l 358 (373)
T 3eqx_A 301 ELVQVIFEQPYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQS--GKEKLFVHPKFV 358 (373)
T ss_dssp HHHHHHHHCSEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC----CCSCEEECHHHH
T ss_pred HHHHHHHHCCCccHHHHHHHhCcCHHHHHHHHHHHHHCCcEEEeCC--CCceEeehHHHH
Confidence 3677777789999999999999999999999999999999854322 224556566543
No 245
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=52.55 E-value=13 Score=31.65 Aligned_cols=43 Identities=14% Similarity=0.031 Sum_probs=37.2
Q ss_pred HHHHHH-hCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 182 ILELAQ-AQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 182 vLela~-~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
||++.. ..+.+|..+|++.+|.++.-+...|..|++.|++-.|
T Consensus 19 iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~~~ 62 (257)
T 2g7u_A 19 VLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGS 62 (257)
T ss_dssp HHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeC
Confidence 555443 3467999999999999999999999999999999887
No 246
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=52.42 E-value=12 Score=32.11 Aligned_cols=44 Identities=11% Similarity=0.135 Sum_probs=37.1
Q ss_pred HHHHHH-hCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeec
Q 025599 182 ILELAQ-AQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 182 vLela~-~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
||++.. ..+.+|..+|++.+|.++.-+...|..|++.|++-.|.
T Consensus 28 iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~~~ 72 (260)
T 2o0y_A 28 LLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCARSVLTSRA 72 (260)
T ss_dssp HHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEECT
T ss_pred HHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECC
Confidence 444432 35679999999999999999999999999999998873
No 247
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*
Probab=52.20 E-value=52 Score=23.99 Aligned_cols=22 Identities=0% Similarity=0.203 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhccccccc
Q 025599 38 QLATFRSQLEDFARKHKNDIRK 59 (250)
Q Consensus 38 qL~~F~~~L~~Fa~~h~~eI~~ 59 (250)
|+..++.....|-..+.+.|..
T Consensus 4 ~~~~l~~~F~~~D~d~~G~i~~ 25 (155)
T 3ll8_B 4 EIKRLGKRFKKLDLDNSGSLSV 25 (155)
T ss_dssp HHHHHHHHHHHHCTTCSSSBCH
T ss_pred HHHHHHHHHHHhCcCCCCeEcH
Confidence 3444555555555555555554
No 248
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=51.96 E-value=99 Score=26.43 Aligned_cols=107 Identities=15% Similarity=0.210 Sum_probs=62.5
Q ss_pred CCceeHHHHHHHHHhhcCCCCCCC---CHHHHHHHHh-hccccCCCeEEEEE----CCEEEEEec---CCccc-------
Q 025599 115 GGLINLQELCNLLRQRRKSNREAV---SEDDCLRAIS-KLKVLGNGYEVISV----GKKKLVRSV---PTELN------- 176 (250)
Q Consensus 115 GGli~l~el~~~v~k~R~~~~~~I---S~~DI~rAik-~L~~LG~g~~vi~i----g~~~~v~sv---p~El~------- 176 (250)
-|.|+..|+...+.+-.......+ .-+|++..|+ .|++|+ |+|... .|+.|.-.| +++++
T Consensus 17 rg~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~I~~IN~~L~~l~--~~Ir~~~~q~~g~~~y~lVN~~~d~~~klaT~yt 94 (238)
T 3nw0_A 17 HGVLEEWDVKRLQTHCYKVHDRNATVDKLEDFINNINSVLESLY--IEIKRGVTEDDGRPIYALVNLATTSISKMATDFA 94 (238)
T ss_dssp SSEEEHHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHGGGT--EEEEEEECTTTCCEEEEEEESSSCTTHHHHTTSC
T ss_pred CCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHhhhcC--cEEEEeecCCCCCEEEEEEeCCCCHHHhhccCCC
Confidence 578888887766665211111222 4556666664 467876 777666 244443334 44333
Q ss_pred hhHHH----HHH-HHH-hCCCccHHHHHH---h---cCCChHHHHHHHHHHHHcCCcee
Q 025599 177 KDHNQ----ILE-LAQ-AQGFVTVDEVER---R---LSWTSGRAIDALDILLEEGLAMV 223 (250)
Q Consensus 177 ~D~~~----vLe-la~-~~g~vt~~~L~~---~---l~W~~~Ra~~~L~~l~~~Gl~Wv 223 (250)
.++.+ +|+ +++ ..|.+|...... . -+.++.+|+..|..|+++|-+..
T Consensus 95 ~~Ei~~fk~lle~i~~s~~~~~s~~~~lnl~~~~~~k~l~~~eae~lL~~lv~~gWl~~ 153 (238)
T 3nw0_A 95 ENELDLFRKALELIIDSETGFASSTNILNLVDQLKGKKMRKKEAEQVLQKFVQNKWLIE 153 (238)
T ss_dssp HHHHHHHHHHHHHHHHSSSSCEEHHHHHGGGTTCSSSCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCceeHHHHHHHHhhcccCCCCHHHHHHHHHHHHHhcchhh
Confidence 22222 233 233 468888644332 1 37899999999999999998765
No 249
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Probab=51.87 E-value=7.4 Score=30.02 Aligned_cols=94 Identities=13% Similarity=0.191 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCCCCCCcccccccccccchhhhHHHHHHHhhhh
Q 025599 31 RTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLAT 110 (250)
Q Consensus 31 ~~~~l~~qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~t 110 (250)
.+.++..+++.++.....|-.++.+-|..+ .|+.++.++|.++-. +-...++. ..
T Consensus 39 ~~~~l~~~~~~l~~~F~~~D~d~dG~I~~~-----El~~~l~~~g~~~~~-----------------~~~~~l~~---~~ 93 (147)
T 1wy9_A 39 NDEDLPSKLEAFKVKYMEFDLNGNGDIDIM-----SLKRMLEKLGVPKTH-----------------LELKRLIR---EV 93 (147)
T ss_dssp TCTTHHHHHHHHHHHHTTSCCCTTSSEEHH-----HHHHHHHHTTCCCCH-----------------HHHHHHHH---HH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCcCcHH-----HHHHHHHHhCCCCCH-----------------HHHHHHHH---Hh
Confidence 345567778888888888877777777655 577788888865321 00112222 22
Q ss_pred cccCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeE
Q 025599 111 RPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYE 158 (250)
Q Consensus 111 r~~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~g~~ 158 (250)
-..+.|.|+..|.+..+.+. .+++.+|.+.+..=|.|..
T Consensus 94 D~d~dg~I~~~eF~~~~~~~---------~~~~~~aF~~~D~d~~g~~ 132 (147)
T 1wy9_A 94 SSGSEETFSYSDFLRMMLGK---------RSAILRMILMYEEKNKEHK 132 (147)
T ss_dssp CSSCTTEECHHHHHHHHCSS---------GGGGGGGGGGCCCC-----
T ss_pred CCCCCCcEeHHHHHHHHHHh---------HHHHHHHHHHHccCCCCCC
Confidence 23345899999998776542 5678888888887777774
No 250
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=51.72 E-value=11 Score=33.91 Aligned_cols=43 Identities=23% Similarity=0.308 Sum_probs=39.8
Q ss_pred HHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 181 QILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 181 ~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
.||++.. .|.+|..+|++.+|.++.-+...+++|+++|++---
T Consensus 24 ~il~~l~-~~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~~~ 66 (380)
T 2hoe_A 24 RILKRIM-KSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVEE 66 (380)
T ss_dssp CSHHHHH-HSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 3888888 899999999999999999999999999999998654
No 251
>1n93_X P40 nucleoprotein; RNA virus nucleoprotein tetramer, viral protein; 1.76A {Borna disease virus} SCOP: a.206.1.1 PDB: 1pp1_X*
Probab=51.30 E-value=18 Score=32.63 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccCh-hHHHHHHHHHHHcC
Q 025599 34 LMKEQLATFRSQLEDFARKHKNDIRKNP-TFRSQFHEMCAKVG 75 (250)
Q Consensus 34 ~l~~qL~~F~~~L~~Fa~~h~~eI~~dp-~fR~~F~~mC~siG 75 (250)
+++..+..+++-|..-|.--.+.|..+. ++.++|+.|.+|||
T Consensus 137 e~SSI~~HCC~LLIGv~~gSS~kI~t~s~QvqrrFKamMasi~ 179 (375)
T 1n93_X 137 EISSIFSHCCSLLIGVVIGSSSKIKAGAEQIKKRFKTMMAALN 179 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSHHHHSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhhhcCCccccccHHHHHHHHHHHHHHcC
Confidence 6888999999999999999999998886 59999999999999
No 252
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=51.25 E-value=52 Score=21.96 Aligned_cols=76 Identities=16% Similarity=0.301 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCCCCCCcccccccccccchhhhHHHHHHHhhhhcccC-CC
Q 025599 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHN-GG 116 (250)
Q Consensus 38 qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~n-GG 116 (250)
+.+.++.....|-.++.+-|..+ .|+.++..+| ++... -++.....-+.| .|
T Consensus 9 ~~~~l~~~F~~~D~d~~G~i~~~-----el~~~l~~~g--~~~~~--------------------~~~~~~~~~D~~~dg 61 (86)
T 2opo_A 9 DIADRERIFKRFDTNGDGKISSS-----ELGDALKTLG--SVTPD--------------------EVRRMMAEIDTDGDG 61 (86)
T ss_dssp HHHHHHHHHHHHCTTCSSEEEHH-----HHHHHHHTTT--TCCHH--------------------HHHHHHHHHCTTCSS
T ss_pred hHHHHHHHHHHHCCCCCCCcCHH-----HHHHHHHHcC--CCCHH--------------------HHHHHHHHhCCCCCC
Confidence 34556666677777777777754 5778888888 33210 122222223333 58
Q ss_pred ceeHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 025599 117 LINLQELCNLLRQRRKSNREAVSEDDCLRA 146 (250)
Q Consensus 117 li~l~el~~~v~k~R~~~~~~IS~~DI~rA 146 (250)
.|+..|.+..+.+.++ ..+++.+|
T Consensus 62 ~i~~~eF~~~~~~~~~------~~~~~~~a 85 (86)
T 2opo_A 62 FISFDEFTDFARANRG------LVKDVSKI 85 (86)
T ss_dssp EECHHHHHHHHHHCTT------THHHHHHH
T ss_pred cCcHHHHHHHHHHCcc------HHHHHHHh
Confidence 9999999998887643 24566655
No 253
>3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A*
Probab=50.73 E-value=8.1 Score=35.37 Aligned_cols=78 Identities=19% Similarity=0.246 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHhhccccCCCeEEEEEC-CEEEEEecCCccchhHHHHHHHHHhCC---CccHHHHHHhcCCChHHHHHHH
Q 025599 137 AVSEDDCLRAISKLKVLGNGYEVISVG-KKKLVRSVPTELNKDHNQILELAQAQG---FVTVDEVERRLSWTSGRAIDAL 212 (250)
Q Consensus 137 ~IS~~DI~rAik~L~~LG~g~~vi~ig-~~~~v~svp~El~~D~~~vLela~~~g---~vt~~~L~~~l~W~~~Ra~~~L 212 (250)
.-+++++.++++.+.. .||..+++. |. .+..|-..+-.+-+..| -+.++ .|-+|+...|...+
T Consensus 149 ~~~~e~~~~~a~~~~~--~G~~~iKiKvG~--------~~~~d~~~v~avR~a~g~d~~l~vD---an~~~~~~~A~~~~ 215 (389)
T 3ozy_A 149 DLTPDQAADELAGWVE--QGFTAAKLKVGR--------APRKDAANLRAMRQRVGADVEILVD---ANQSLGRHDALAML 215 (389)
T ss_dssp SCCHHHHHHHHHHHHH--TTCSEEEEECCS--------CHHHHHHHHHHHHHHHCTTSEEEEE---CTTCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CCCCEEeeccCC--------CHHHHHHHHHHHHHHcCCCceEEEE---CCCCcCHHHHHHHH
Confidence 3578899888887654 468888875 32 23334433333333222 23332 47899999999999
Q ss_pred HHHHHcCCceeecCC
Q 025599 213 DILLEEGLAMVDDGH 227 (250)
Q Consensus 213 ~~l~~~Gl~WvD~q~ 227 (250)
..|...|+.|+.+-.
T Consensus 216 ~~l~~~~i~~iEqP~ 230 (389)
T 3ozy_A 216 RILDEAGCYWFEEPL 230 (389)
T ss_dssp HHHHHTTCSEEESCS
T ss_pred HHHHhcCCCEEECCC
Confidence 999999999998654
No 254
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=50.64 E-value=37 Score=23.58 Aligned_cols=45 Identities=13% Similarity=0.471 Sum_probs=36.7
Q ss_pred HHHHHHhCCCccHHHHHHhcC-----CChHHHHHHHHHHHHcCCceeecC
Q 025599 182 ILELAQAQGFVTVDEVERRLS-----WTSGRAIDALDILLEEGLAMVDDG 226 (250)
Q Consensus 182 vLela~~~g~vt~~~L~~~l~-----W~~~Ra~~~L~~l~~~Gl~WvD~q 226 (250)
+++.+..+||+|.+++.+.+. .+.......+..|...|+-=+|+-
T Consensus 14 Li~~gK~~G~lTy~EI~d~l~~~~~~ld~e~id~i~~~L~~~gI~Vvd~~ 63 (72)
T 2k6x_A 14 LISLGKKKGYITYEDIDKAFPPDFEGFDTNLIERIHEELEKHGINIVENE 63 (72)
T ss_dssp HHHHHHHHSSCBHHHHHHHCSCSCSSCCHHHHHHHHHHHHHTCCCCBCCS
T ss_pred HHHHHhHcCCccHHHHHHhCccccccCCHHHHHHHHHHHHHCCCccccCC
Confidence 445566789999999998874 788999999999999998667654
No 255
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=50.63 E-value=12 Score=31.52 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=34.0
Q ss_pred CCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecC
Q 025599 189 QGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDG 226 (250)
Q Consensus 189 ~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q 226 (250)
+-.++..+|++.||-|..-.+++|..|..+|++-+-..
T Consensus 49 G~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~ 86 (239)
T 2hs5_A 49 GARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELN 86 (239)
T ss_dssp TCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred cCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 34689999999999999999999999999999877643
No 256
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=50.42 E-value=3.3 Score=36.32 Aligned_cols=49 Identities=24% Similarity=0.331 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHhC---CCccHHHHHHhc-CCChHHHHHHHHHHHHcCCce
Q 025599 174 ELNKDHNQILELAQAQ---GFVTVDEVERRL-SWTSGRAIDALDILLEEGLAM 222 (250)
Q Consensus 174 El~~D~~~vLela~~~---g~vt~~~L~~~l-~W~~~Ra~~~L~~l~~~Gl~W 222 (250)
.++.-+.+||+++... -.+++.+|.+.+ +.+....+++|+.|+.+|.+.
T Consensus 204 ~~~~~~~~Vl~~i~~~~~~~Gi~~~~I~~~l~~~~~~~v~~al~~L~~eG~IY 256 (270)
T 2pi2_A 204 GLTVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIY 256 (270)
T ss_dssp -----------------------------------------------------
T ss_pred CCCHHHHHHHHHHHhCCCccCCCHHHHHHHhcCCCHHHHHHHHHHHHhCCEEe
Confidence 4666788899998854 578999999988 799999999999999999985
No 257
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=50.28 E-value=33 Score=27.72 Aligned_cols=52 Identities=21% Similarity=0.406 Sum_probs=41.2
Q ss_pred ccchhHHHHHHHHH----hCCC-ccHHHHHHhcCCC-hHHHHHHHHHHHHcCCceeec
Q 025599 174 ELNKDHNQILELAQ----AQGF-VTVDEVERRLSWT-SGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 174 El~~D~~~vLela~----~~g~-vt~~~L~~~l~W~-~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
+|+..|..+++... ..|+ .|..+|++.+|++ ..-...-+..|.+.|.+.++.
T Consensus 3 ~lt~~q~~i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~~l~~~~~l~~~~ 60 (202)
T 1jhf_A 3 ALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVS 60 (202)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHTTSEEECS
T ss_pred ccCHHHHHHHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHHHHHHCCCceeCC
Confidence 57888888877665 3566 4999999999998 777777788888888777764
No 258
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=50.21 E-value=37 Score=22.36 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=35.1
Q ss_pred CCccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHH
Q 025599 172 PTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILL 216 (250)
Q Consensus 172 p~El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~ 216 (250)
...|+..+..|+.+. ..|+ |..++++.+|.+..-++..+..+.
T Consensus 9 ~~~L~~~e~~il~~~-~~g~-s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 9 KPLLTKREREVFELL-VQDK-TTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp CCCCCHHHHHHHHHH-TTTC-CHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH-HcCC-CHHHHHHHHCCCHHHHHHHHHHHH
Confidence 357899999999886 4555 999999999999988888777543
No 259
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=50.01 E-value=40 Score=26.42 Aligned_cols=52 Identities=15% Similarity=0.221 Sum_probs=42.4
Q ss_pred chhHHHHHHHHHh-C-CCccHHHHHHhc-----CCChHHHHHHHHHHHHcCCceeecCC
Q 025599 176 NKDHNQILELAQA-Q-GFVTVDEVERRL-----SWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 176 ~~D~~~vLela~~-~-g~vt~~~L~~~l-----~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
+.-...||++... . +.+|+++|.+.+ +.+..=.-..|+.|+..|++-.-+-.
T Consensus 16 T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~ 74 (150)
T 2w57_A 16 TLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHHFE 74 (150)
T ss_dssp CHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEECG
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEEeC
Confidence 4445668888764 4 799999999888 89999999999999999999765543
No 260
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=49.91 E-value=26 Score=29.28 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=38.1
Q ss_pred ccchhHHHHHHHH----HhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 174 ELNKDHNQILELA----QAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 174 El~~D~~~vLela----~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
+|+.-+..+|+.. +.....+..+|++.++.++.-+...|+.|+++|++=+.
T Consensus 3 ~lt~~~e~yL~~i~~l~~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~GlV~r~ 57 (226)
T 2qq9_A 3 DLVATTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVA 57 (226)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHHHHHHHhhcCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 3455555555543 23334456999999999999999999999999998664
No 261
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=49.83 E-value=26 Score=27.37 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=40.6
Q ss_pred chhHHHHHHHHHhCCCccHHHHHHhc-----CCChHHHHHHHHHHHHcCCceeecC
Q 025599 176 NKDHNQILELAQAQGFVTVDEVERRL-----SWTSGRAIDALDILLEEGLAMVDDG 226 (250)
Q Consensus 176 ~~D~~~vLela~~~g~vt~~~L~~~l-----~W~~~Ra~~~L~~l~~~Gl~WvD~q 226 (250)
+.-...||++....+++|+++|-+.+ +.+..=.-..|+.|+..|++-.=+.
T Consensus 18 T~qR~~Il~~l~~~~h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~~ 73 (145)
T 3eyy_A 18 TPQRQLVLEAVDTLEHATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHL 73 (145)
T ss_dssp CHHHHHHHHHHHHHSSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred CHHHHHHHHHHHhcCCCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEEe
Confidence 44456688877754499999998766 6889999999999999999876543
No 262
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=48.85 E-value=30 Score=28.57 Aligned_cols=86 Identities=19% Similarity=0.186 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHhh---ccccCCCeEEEEEC-CEEEEEecCCccchhH--HHHHHHHH---hCCCccHHHHHH--------
Q 025599 137 AVSEDDCLRAISK---LKVLGNGYEVISVG-KKKLVRSVPTELNKDH--NQILELAQ---AQGFVTVDEVER-------- 199 (250)
Q Consensus 137 ~IS~~DI~rAik~---L~~LG~g~~vi~ig-~~~~v~svp~El~~D~--~~vLela~---~~g~vt~~~L~~-------- 199 (250)
.+|+.|.....+. |+.+| |.+-.+| +...|++||.-+.... ..+-++++ ..+..+...+.+
T Consensus 66 ~ls~~e~~~l~~~~~~l~~~G--f~~e~~g~~~~~v~~vP~~l~~~~~~~~l~ell~~l~~~~~~~~~~~~~~~~~~~AC 143 (197)
T 3kdg_A 66 HYSTNEALIIEQHKQELESVG--VFLESFGSNSYIVRCHPAWFPKGEEAELIEEIIQQVLDSKNIDIKKLREEAAIMMSC 143 (197)
T ss_dssp ECCTTHHHHHHHTHHHHHHTT--CCCEECSTTEEEEEEEETTSCTTCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHHHHhCC--CEEEECCCCEEEEEecCcccccccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence 5677776554444 44554 6666777 7788999997654332 22333333 334444443221
Q ss_pred ------hcCCChHHHHHHHHHHHHcCCceee
Q 025599 200 ------RLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 200 ------~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
+-.|+..-++..|++|.+...-|.-
T Consensus 144 r~AIk~g~~Ls~~Em~~Ll~~L~~~~~p~~C 174 (197)
T 3kdg_A 144 KGSIKANRHLRNDEIKALLDDLRSTSDPFTC 174 (197)
T ss_dssp CC----CCCCCHHHHHHHHHHHHHSSCTTBC
T ss_pred HhhccCCCCCCHHHHHHHHHHHHcCCCCCcC
Confidence 2358999999999999887766643
No 263
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=48.73 E-value=16 Score=30.60 Aligned_cols=50 Identities=20% Similarity=0.256 Sum_probs=37.6
Q ss_pred cchhHHHHHHHHH---hCCCccH--HHHHHhcCCChHHHHHHHHHHHHcCCceeec
Q 025599 175 LNKDHNQILELAQ---AQGFVTV--DEVERRLSWTSGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 175 l~~D~~~vLela~---~~g~vt~--~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
|+.-+..+|.+.- ..| +|+ .+|++.+++++.-....|+.|+++|++-+..
T Consensus 4 lt~~~e~~L~~L~~l~~~~-~~~~~~~La~~l~vs~~tvs~~l~~Le~~GlV~r~~ 58 (230)
T 1fx7_A 4 LVDTTEMYLRTIYDLEEEG-VTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAG 58 (230)
T ss_dssp TSSHHHHHHHHHHHHHHHT-SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT
T ss_pred CCHHHHHHHHHHHHHhhcC-CCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeC
Confidence 4444555554332 223 555 9999999999999999999999999987753
No 264
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=48.48 E-value=24 Score=27.48 Aligned_cols=38 Identities=3% Similarity=0.017 Sum_probs=32.5
Q ss_pred HHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCc
Q 025599 183 LELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLA 221 (250)
Q Consensus 183 Lela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~ 221 (250)
+.+|...+. |.++|++.++.+..-.+..|..|.+.|++
T Consensus 16 ~~La~~~~~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv 53 (145)
T 1xd7_A 16 SLISMDEKT-SSEIIADSVNTNPVVVRRMISLLKKADIL 53 (145)
T ss_dssp HHHHTCSCC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCce
Confidence 445553344 99999999999999999999999999996
No 265
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=48.38 E-value=14 Score=32.12 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=31.3
Q ss_pred CCc-cHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 190 GFV-TVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 190 g~v-t~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
..+ |..+|++.+|-+..-++.||..|+.+|++=.-
T Consensus 51 ~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 86 (272)
T 3eet_A 51 TRLPSQARIREEYGVSDTVALEARKVLMAEGLVEGR 86 (272)
T ss_dssp SBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 345 99999999999999999999999999997544
No 266
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=48.14 E-value=66 Score=26.09 Aligned_cols=34 Identities=9% Similarity=0.038 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCC
Q 025599 40 ATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDP 78 (250)
Q Consensus 40 ~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDP 78 (250)
..++.....|-.++.+.|..+ .|+.++.++|..|
T Consensus 51 ~~l~~~F~~~D~d~~G~I~~~-----El~~~l~~~g~~~ 84 (220)
T 3sjs_A 51 TRIYQWFMGVDRDRSGTLEIN-----ELMMGQFPGGIRL 84 (220)
T ss_dssp HHHHHHHHHHCTTCCSSBCHH-----HHHHCCBGGGBCC
T ss_pred HHHHHHHHHhCCCCCCcCcHH-----HHHHHHHHcCCCC
Confidence 334455556666777777654 4667777777553
No 267
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=47.01 E-value=38 Score=24.42 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=37.2
Q ss_pred HHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCce--eecC
Q 025599 182 ILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAM--VDDG 226 (250)
Q Consensus 182 vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~W--vD~q 226 (250)
+..+++.--.+|.+.|++.++.+...+...|-.|+.+|.++ +|..
T Consensus 21 l~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~ 67 (84)
T 1ufm_A 21 LLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQI 67 (84)
T ss_dssp HHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETT
T ss_pred HHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCC
Confidence 34455556789999999999999999999999999999865 5633
No 268
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=46.55 E-value=29 Score=31.91 Aligned_cols=98 Identities=15% Similarity=0.229 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCCCCCCcccccccccccchhhhHHHHHHHhhhhccc-CCC
Q 025599 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPH-NGG 116 (250)
Q Consensus 38 qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~-nGG 116 (250)
++..++.....|=.++.+.|..+ .|..++..+|.++.... | .......++-.....+. +.|
T Consensus 344 ~~~~l~~~F~~~D~d~dG~I~~~-----El~~~l~~~~~~~~~~~--------~-----~~~~~~~~~~~~~~~D~d~~G 405 (494)
T 3lij_A 344 ETKELTDIFRHIDKNGDGQLDRQ-----ELIDGYSKLSGEEVAVF--------D-----LPQIESEVDAILGAADFDRNG 405 (494)
T ss_dssp HHHHHHHHHHHHCTTCSSEECHH-----HHHHTTHHHHSSCCCCC---------------CHHHHHHHHHHHHHCTTCSS
T ss_pred HHHHHHHHHHHhCcCCCCeEcHH-----HHHHHHHHhcccccccc--------c-----ccccHHHHHHHHHHhCCCCCC
Confidence 34445555555555555555543 45566666665544321 1 11122223333333333 458
Q ss_pred ceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCe
Q 025599 117 LINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGY 157 (250)
Q Consensus 117 li~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~g~ 157 (250)
.|+.+|....+.+.. ...+++++.+|.+.+-.=|+|+
T Consensus 406 ~I~~~EF~~~~~~~~----~~~~~~~~~~~F~~~D~d~~G~ 442 (494)
T 3lij_A 406 YIDYSEFVTVAMDRK----SLLSKDKLESAFQKFDQDGNGK 442 (494)
T ss_dssp SEEHHHHHHHHSCHH----HHTCHHHHHHHHHHHCTTCSSE
T ss_pred cCcHHHHHHHHHhhh----ccccHHHHHHHHHHHCCCCCCc
Confidence 999999987765432 2357888888888887767765
No 269
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=46.22 E-value=82 Score=22.84 Aligned_cols=62 Identities=24% Similarity=0.381 Sum_probs=46.2
Q ss_pred hhhHHHHHHHhhhhcccCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEECCEEEEEec
Q 025599 97 YELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSV 171 (250)
Q Consensus 97 ~eLavqIvevC~~tr~~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~g~~vi~ig~~~~v~sv 171 (250)
-++.-+|.++|... + +| |+-++|...+ ..|+.+|...||+.|=.-| -+++++-++..+-|.+
T Consensus 13 ~~ie~~IL~l~~~~-P-~G--Itd~~L~~~~--------p~~~~~~r~~aIN~LL~~g-kiel~K~~~~liYr~k 74 (81)
T 2dk8_A 13 VEIENRIIELCHQF-P-HG--ITDQVIQNEM--------PHIEAQQRAVAINRLLSMG-QLDLLRSNTGLLYRIK 74 (81)
T ss_dssp HHHHHHHHHHHHHC-S-SC--EEHHHHHHHC--------TTSCHHHHHHHHHHHHHHT-SEEEEECSSSEEEEEC
T ss_pred HHHHHHHHHHHHhC-C-CC--CCHHHHHHHC--------CCCCHHHHHHHHHHHHHcC-CeEEEecCCeEEEEec
Confidence 56788899999664 2 43 6677765553 5699999999999997755 4888887776666665
No 270
>3qyf_A Crispr-associated protein; helix-turn-helix, antiviral protein, viral resistance, nucle binding domain; 1.90A {Sulfolobus solfataricus}
Probab=45.67 E-value=27 Score=31.84 Aligned_cols=47 Identities=13% Similarity=0.120 Sum_probs=38.0
Q ss_pred cCCccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 171 VPTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 171 vp~El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
+|-.++.+...+++-...+|+.+++.|++.+|.+ +.+|+..|++=++
T Consensus 205 lPi~ld~~~~~~lk~~~~~g~~~~~~la~~lgi~-------v~~L~~~gli~~~ 251 (324)
T 3qyf_A 205 PPITIRPKYLDWLIRFAISGYTLSEKRAEELGIP-------VRLLEAKMLVERK 251 (324)
T ss_dssp CCEEECHHHHHHHHHHHHHCSEEEHHHHHHTTCC-------HHHHHHTTSEEEE
T ss_pred CCcccCHHHHHHHHHHHhcCCCCHHHHHHHhCCC-------HHHHHHCCCeEec
Confidence 4667777776666655547999999999999999 5599999998777
No 271
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=45.64 E-value=54 Score=27.71 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHhCCCccHHHHHHhc-----CCChHHHHHHHHHHHHcCCceee
Q 025599 177 KDHNQILELAQAQGFVTVDEVERRL-----SWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 177 ~D~~~vLela~~~g~vt~~~L~~~l-----~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
.....+|..+.. |.+|.++|.+.+ +.+...+...|+.|++.|++..+
T Consensus 282 ~~~~~~l~~la~-g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 333 (350)
T 2qen_A 282 PRYVDILRAIAL-GYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE 333 (350)
T ss_dssp HHHHHHHHHHHT-TCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hhHHHHHHHHHh-CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec
Confidence 445556666655 678989998766 88888999999999999999876
No 272
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=45.62 E-value=17 Score=29.95 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=33.7
Q ss_pred CCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeec
Q 025599 189 QGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 189 ~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
+..++..+|++.||-|..-.+++|..|..+|++-+-.
T Consensus 37 G~~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~~~ 73 (222)
T 3ihu_A 37 GQRLVETDLVAHFGVGRNSVREALQRLAAEGIVDLQR 73 (222)
T ss_dssp TCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECS
T ss_pred CCccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 4578899999999999999999999999999987753
No 273
>3tl8_B Effector protein hopab2; plant immunity, solanum lycopersicum, triggered immunity, bacterial pathogenesis, transferase-LIG complex; HET: TPO; 2.50A {Pseudomonas syringae PV}
Probab=45.56 E-value=60 Score=25.05 Aligned_cols=59 Identities=24% Similarity=0.289 Sum_probs=46.6
Q ss_pred HHHHHHHhhcHhHHHHHHHHHHHH---HHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCCC
Q 025599 15 VARDQYRLLGENVAKLRTDLMKEQ---LATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLA 80 (250)
Q Consensus 15 ~~~~~~~~~g~~l~~~~~~~l~~q---L~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL~ 80 (250)
.++..+.+.|...+...++.|..| |+.++.+|+.++-.++. |- +.+| .-+.+.||||-.
T Consensus 27 ~~r~amrNrgnn~ad~AL~~L~qqGvdmerLraAle~~im~~~p-iP--~Di~----raL~~VGI~P~i 88 (117)
T 3tl8_B 27 VDRAAMRNRGNDEADAALRGLVQQGVNLEHLRTALERHVMQRLP-IP--LDIG----SALQNVGINPSI 88 (117)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCC-CC--HHHH----HHHHHTTCCCCC
T ss_pred hhHHHHHhccccHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC-CC--HHHH----HHHHhCCCCCCC
Confidence 456778888888888888888887 99999999999986663 32 2344 677899999975
No 274
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=45.53 E-value=23 Score=32.87 Aligned_cols=49 Identities=20% Similarity=0.097 Sum_probs=43.6
Q ss_pred CccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCce
Q 025599 173 TELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAM 222 (250)
Q Consensus 173 ~El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~W 222 (250)
..++.++..||++... +-+++++|....|++.......|-+|+-+|++=
T Consensus 324 ~~l~~~~~~vl~~l~~-~~~~~D~l~~~~gl~~~~v~~~L~~LEl~G~v~ 372 (382)
T 3maj_A 324 EPDTGDRTRILALLGP-SPVGIDDLIRLSGISPAVVRTILLELELAGRLE 372 (382)
T ss_dssp CCCTTHHHHHHHHCCS-SCEEHHHHHHHHCCCHHHHHHHHHHHHHTTCCE
T ss_pred CCCChHHHHHHHhhCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEE
Confidence 3588889899988764 678999999999999999999999999999884
No 275
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=45.45 E-value=30 Score=30.74 Aligned_cols=39 Identities=21% Similarity=0.127 Sum_probs=35.6
Q ss_pred CCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 189 QGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 189 ~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
.|.+|+++|++.+|.+.......|..|...|++-+++..
T Consensus 41 ~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~~~ 79 (353)
T 4a6d_A 41 PGPLDVAAVAAGVRASAHGTELLLDICVSLKLLKVETRG 79 (353)
T ss_dssp SSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCCCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEEEeccC
Confidence 478999999999999999999999999999999887654
No 276
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=45.33 E-value=78 Score=28.77 Aligned_cols=145 Identities=15% Similarity=0.207 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCCCCCCcccccccccccchhhhHHHHHHHhhhhcccCCC
Q 025599 37 EQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGG 116 (250)
Q Consensus 37 ~qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~nGG 116 (250)
.+...++.....|=.++.+.|..+ +|...++.++..+|.+|-... . .......+...++.+.+ -..+.|
T Consensus 328 ~~~~~l~~~F~~~D~d~dG~I~~~-El~~~l~~~~~~~g~~~~~~~-----~--~~~~~~~~~~~~~~~~~---D~d~dG 396 (486)
T 3mwu_A 328 DETKQLTEIFRKLDTNNDGMLDRD-ELVRGYHEFMRLKGVDSNSLI-----Q--NEGSTIEDQIDSLMPLL---DMDGSG 396 (486)
T ss_dssp HHHHHHHHHHHHHCTTCSSSBCHH-HHHHHHHHHHHHHTCCGGGHH-----H--HTSSCHHHHHHHHHHHH---CTTCCS
T ss_pred HHHHHHHHHHHHhCCCCCceeeHH-HHHHHHHHhhhhhcccchhcc-----c--ccchhhHHHHHHHHHHh---cCCCCC
Confidence 344667777777777777777665 466667888888888864210 0 00122222233333332 223458
Q ss_pred ceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEECC-EEEEEecCCccchhHHHHHHHHH-----hCC
Q 025599 117 LINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGK-KKLVRSVPTELNKDHNQILELAQ-----AQG 190 (250)
Q Consensus 117 li~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~g~~vi~ig~-~~~v~svp~El~~D~~~vLela~-----~~g 190 (250)
.|+..|.+..+.+. ....+++++.+|.+.+-.=|+|+ |+... +.+++.....++.+. +-++.. ..|
T Consensus 397 ~I~~~Ef~~~~~~~----~~~~~~~~~~~~F~~~D~d~dG~--Is~~El~~~l~~~g~~~~~~~--~~~~~~~~D~d~dG 468 (486)
T 3mwu_A 397 SIEYSEFIASAIDR----TILLSRERMERAFKMFDKDGSGK--ISTKELFKLFSQADSSIQMEE--LESIIEQVDNNKDG 468 (486)
T ss_dssp SBCHHHHHHHHSCT----TTTCCHHHHHHHHHHHCSSCSSS--BCSSCC----------------------CCCCSSCSS
T ss_pred cCcHHHHHHHHHhh----hccchHHHHHHHHHHhCCCCCCc--CCHHHHHHHHHHcCCCCCHHH--HHHHHHHhCCCCCC
Confidence 99999998776543 23468899999999988877776 22221 223333322233222 222222 258
Q ss_pred CccHHHHHHh
Q 025599 191 FVTVDEVERR 200 (250)
Q Consensus 191 ~vt~~~L~~~ 200 (250)
.||.+++...
T Consensus 469 ~I~~~EF~~~ 478 (486)
T 3mwu_A 469 EVDFNEFVEM 478 (486)
T ss_dssp SBCHHHHHHH
T ss_pred cEeHHHHHHH
Confidence 8888887643
No 277
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=45.10 E-value=29 Score=20.50 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=29.9
Q ss_pred CCccchhHH-HHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHc
Q 025599 172 PTELNKDHN-QILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEE 218 (250)
Q Consensus 172 p~El~~D~~-~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~ 218 (250)
|..++.++. .++.+. ..| .|..++++.+|.+..-....+......
T Consensus 3 ~~~l~~~~~~~i~~~~-~~g-~s~~~IA~~lgis~~Tv~~~~~~~~~~ 48 (51)
T 1tc3_C 3 GSALSDTERAQLDVMK-LLN-VSLHEMSRKISRSRHCIRVYLKDPVSY 48 (51)
T ss_dssp SCCCCHHHHHHHHHHH-HTT-CCHHHHHHHHTCCHHHHHHHHHCSTTT
T ss_pred CCCCCHHHHHHHHHHH-HcC-CCHHHHHHHHCcCHHHHHHHHhhHHhc
Confidence 456666654 445444 345 699999999999988777766544333
No 278
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=45.03 E-value=15 Score=31.52 Aligned_cols=43 Identities=23% Similarity=0.215 Sum_probs=36.8
Q ss_pred HHHHHH-hCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 182 ILELAQ-AQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 182 vLela~-~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
||++.. ..+.+|..+|++.+|.++.-+...|..|++.|++-.|
T Consensus 26 iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~~~ 69 (265)
T 2ia2_A 26 VIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVATD 69 (265)
T ss_dssp HHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEES
T ss_pred HHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 444433 3467999999999999999999999999999999887
No 279
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=44.72 E-value=1.5e+02 Score=25.26 Aligned_cols=128 Identities=13% Similarity=0.175 Sum_probs=84.8
Q ss_pred ccchhhhHHHHHHHhhhhc---ccCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEECCEEEEE
Q 025599 93 GDFYYELGVQIVEICLATR---PHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVR 169 (250)
Q Consensus 93 gdfy~eLavqIvevC~~tr---~~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~g~~vi~ig~~~~v~ 169 (250)
.++|-++.-+|.+....-- +.--| |+..+|.+++.+ .+++.-+...++.|..=| . +..-|+. |.
T Consensus 61 ~~~~~~~~~~l~~~L~~~H~~~P~~~G-~~~~~L~~~~~~-------~~~~~l~~~ll~~l~~~g--~-l~~~~~~--v~ 127 (258)
T 1lva_A 61 TERYQAWWQAVTRALEEFHSRYPLRPG-LAREELRSRYFS-------RLPARVYQALLEEWSREG--R-LQLAANT--VA 127 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTSSC-EEHHHHHHHHCT-------TSCHHHHHHHHHHHHHTT--S-EEEETTE--EE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccC-CCHHHHHHhccc-------cCCHHHHHHHHHHHHHCC--C-EEecCCE--Ee
Confidence 6788888888888777522 22223 889999988743 246655555556664433 2 3333453 33
Q ss_pred ecCC---ccchhHHHHHHHHH----hCCC--ccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCCCCCCcceeecCc
Q 025599 170 SVPT---ELNKDHNQILELAQ----AQGF--VTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWFPCA 239 (250)
Q Consensus 170 svp~---El~~D~~~vLela~----~~g~--vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw~P~l 239 (250)
. |+ .++.++.++.+-+. ..|+ -++.+|.+.++.+...++.+|..|++.|.+=.=. +..|+-|..
T Consensus 128 l-~~h~~~~~~~~~~~~~~i~~~~~~~g~~pp~~~dl~~~l~~~~~~~~~~l~~l~~~g~lv~l~-----~~~~~~~~~ 200 (258)
T 1lva_A 128 L-AGFTPSFSETQKKLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKIN-----DEFYWHRQA 200 (258)
T ss_dssp E-TTCCCCCCHHHHHHHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESS-----SSBEEEHHH
T ss_pred C-CCCccCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHhHhCCCHHHHHHHHHHHHHCCCEEEec-----CCeEEcHHH
Confidence 3 43 67888877655433 4564 4889999999999999999999999999664321 466776654
No 280
>2lf3_A Effector protein hopab3; type III effector, structural genomics, PSI-biology, protein structure initiative; NMR {Pseudomonas syringae PV}
Probab=44.71 E-value=70 Score=24.33 Aligned_cols=59 Identities=20% Similarity=0.260 Sum_probs=46.1
Q ss_pred HHHHHHHhhcHhHHHHHHHHHHHH---HHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCCC
Q 025599 15 VARDQYRLLGENVAKLRTDLMKEQ---LATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLA 80 (250)
Q Consensus 15 ~~~~~~~~~g~~l~~~~~~~l~~q---L~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL~ 80 (250)
.++..+.+.|...+..-++.|..| |+.++.+|+.++-.++. |- +.+| .-+.+.||||-.
T Consensus 21 ~~r~amrNrgnn~adaaL~~L~qqGvdmerLraAle~~i~~~~p-iP--~Di~----raL~~VGI~p~i 82 (107)
T 2lf3_A 21 ANRVAMRNRGNNEADAALQALAQNGINMEDLRAALEAYIVWLRP-IP--LDIA----NALEGVGITPRF 82 (107)
T ss_dssp CTHHHHCCSTHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTCCC-CC--HHHH----HHHHHTTCCCCC
T ss_pred hhHHHHHhccchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC-CC--HHHH----HHHHcCCCCCCC
Confidence 456777788888888888888888 99999999999987663 32 2344 677899999975
No 281
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=44.63 E-value=51 Score=21.79 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=35.2
Q ss_pred ccchhHHHHHHHHHh---CCCccHHHHHHhcCCChHHHHHHHHHHHH
Q 025599 174 ELNKDHNQILELAQA---QGFVTVDEVERRLSWTSGRAIDALDILLE 217 (250)
Q Consensus 174 El~~D~~~vLela~~---~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (250)
.|+..+..|+.+.-. ....|.+++++.+|.+...++..+....+
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 578888888887762 13469999999999999999998886544
No 282
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=43.85 E-value=40 Score=25.21 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=13.6
Q ss_pred CCCCHHHHHHHHhhc
Q 025599 136 EAVSEDDCLRAISKL 150 (250)
Q Consensus 136 ~~IS~~DI~rAik~L 150 (250)
..|+++||..|++.+
T Consensus 80 ktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 80 KTVTAMDVVYALKRQ 94 (103)
T ss_dssp SEECHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHc
Confidence 569999999999987
No 283
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=43.58 E-value=18 Score=30.28 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=30.9
Q ss_pred CCc-cHHHHHHhcCCChHHHHHHHHHHHHcCCcee
Q 025599 190 GFV-TVDEVERRLSWTSGRAIDALDILLEEGLAMV 223 (250)
Q Consensus 190 g~v-t~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~Wv 223 (250)
..+ +..+|++.||.|..-.+++|..|..+|++-+
T Consensus 26 ~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~ 60 (239)
T 2di3_A 26 DHLPSERALSETLGVSRSSLREALRVLEALGTIST 60 (239)
T ss_dssp CBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC
T ss_pred CcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEe
Confidence 457 6889999999999999999999999999766
No 284
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO, EF-hand calcium binding proteins, S100 proteins, protein dynamics, binding protein; 2.10A {Homo sapiens} SCOP: a.39.1.0 PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A
Probab=42.37 E-value=89 Score=22.56 Aligned_cols=76 Identities=20% Similarity=0.234 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHhc---ccccccChhHHHHHHHHHHHcCCCCCCCCCcccccccccccchhhhHHHHHHHhhhh
Q 025599 34 LMKEQLATFRSQLEDFARKH---KNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLAT 110 (250)
Q Consensus 34 ~l~~qL~~F~~~L~~Fa~~h---~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~t 110 (250)
+|++.++.++.....|.++. .+-|..+ .|+.++.++|-+++... .....|+-.++.
T Consensus 5 ~le~~i~~l~~~F~~fD~~~g~~~G~Is~~-----EL~~~l~~~~~~~l~~~----------------~~~~ev~~~i~~ 63 (100)
T 3nxa_A 5 ELEKAVIVLVENFYKYVSKYSLVKNKISKS-----SFREMLQKELNHMLSDT----------------GNRKAADKLIQN 63 (100)
T ss_dssp HHHHHHHHHHHHHHHTSCTTCSCTTCBCHH-----HHHHHHHHHSTTTTCSS----------------HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcCCCCCCeEcHH-----HHHHHHHHHcccccccc----------------ccHHHHHHHHHH
Confidence 57888899999999998763 5778765 45566666553433211 112223333334
Q ss_pred cccC-CCceeHHHHHHHHHhh
Q 025599 111 RPHN-GGLINLQELCNLLRQR 130 (250)
Q Consensus 111 r~~n-GGli~l~el~~~v~k~ 130 (250)
.+.| .|.|+..|-+..+.+.
T Consensus 64 ~D~d~DG~Idf~EF~~~m~~~ 84 (100)
T 3nxa_A 64 LDANHDGRISFDEYWTLIGGI 84 (100)
T ss_dssp SCCCSSCCBCHHHHHHHHHHH
T ss_pred hCCCCCCCCcHHHHHHHHHHH
Confidence 4444 4899999988777653
No 285
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Probab=42.16 E-value=1.1e+02 Score=23.09 Aligned_cols=95 Identities=15% Similarity=0.244 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCCCCCCcccccccccccchhhhHHHHHHH
Q 025599 27 VAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEI 106 (250)
Q Consensus 27 l~~~~~~~l~~qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvev 106 (250)
+....+..+-.++..++.....|-.++.+.|..+ .|+.++..+|..+- + +....++..
T Consensus 64 i~~~eF~~~~~~~~~~~~~F~~~D~d~~G~i~~~-----el~~~l~~~g~~~~--------------~---~~~~~~~~~ 121 (173)
T 1alv_A 64 LGFEEFKYLWNNIKKWQAIYKQFDVDRSGTIGSS-----ELPGAFEAAGFHLN--------------E---HLYSMIIRR 121 (173)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHCTTCCSSBCTT-----THHHHHHHHTCCCC--------------H---HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH-----HHHHHHHHcCCCCC--------------H---HHHHHHHHH
Confidence 4444455555555666666677767777777665 34556666664321 0 122233333
Q ss_pred hhhhcccCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCe
Q 025599 107 CLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGY 157 (250)
Q Consensus 107 C~~tr~~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~g~ 157 (250)
+ ....|-|+..|.+..+.+. +++.+|.+.+-+=|.|+
T Consensus 122 ~----dd~dg~i~~~eF~~~~~~~----------~~~~~~F~~~D~d~~G~ 158 (173)
T 1alv_A 122 Y----SDEGGNMDFDNFISCLVRL----------DAMFRAFKSLDKDGTGQ 158 (173)
T ss_dssp H----TCSSSCBCHHHHHHHHHHH----------HHHHHHHHHHSSSCCSE
T ss_pred h----cCCCCcCcHHHHHHHHHHH----------HHHHHHHHHhCCCCCCe
Confidence 2 2445788999988777652 56777777777777775
No 286
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=42.16 E-value=1.2 Score=40.60 Aligned_cols=58 Identities=16% Similarity=0.121 Sum_probs=43.3
Q ss_pred chhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCCCCCCcceeec
Q 025599 176 NKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWFP 237 (250)
Q Consensus 176 ~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw~P 237 (250)
+..+.+++-..-..|-.|+.+|++.+|++..++..+|+.|.+.|++=+... .+.+|.|
T Consensus 17 s~~ea~vY~~Ll~~g~~t~~eia~~~gv~~~~Vy~~L~~L~~~GlV~~~~g----~p~~y~a 74 (342)
T 3qph_A 17 TKYEILTYWTLLVYGPSTAKEISTKSGIPYNRVYDTISSLKLRGFVTEIEG----TPKVYAA 74 (342)
T ss_dssp HHHTTSCSHHHHHHHHHHHSCCSSSTTSSSCSCCHHHHHHHHHTSEEEECC----TTCEEEE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcC----ceeEEEE
Confidence 333433433333457889999999999999999999999999999988742 3455554
No 287
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=42.14 E-value=27 Score=29.31 Aligned_cols=54 Identities=13% Similarity=0.087 Sum_probs=35.9
Q ss_pred HHhcccccccChhHHHHHHHHHHHcCCCCCCCCCcccccccccccchhhhHHHHHHHhhhhc
Q 025599 50 ARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATR 111 (250)
Q Consensus 50 a~~h~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr 111 (250)
..+...|+-+||.+-+.+...-..-|++.-.. + ..|..-|.||.++-.-|...|
T Consensus 17 ~e~kaket~kN~kls~~L~~~i~ea~~~~~~d------k--~~g~LLy~latk~k~~~~~~r 70 (187)
T 3tl4_X 17 EDKKVKEIVKNKKVSDSLYKLIKETPSDYQWN------K--STRALVHNLASFVKGTDLPKS 70 (187)
T ss_dssp CHHHHHHHTTSHHHHHHHHHHHHTSCTTCCCC------H--HHHHHHHHHHHHHTTCCCTTH
T ss_pred ChhHHHHHHhCHHHHHHHHHHHHHccccCCCC------H--HHHHHHHHHHHhccCccchhH
Confidence 44566788899999999988888777642111 1 136778899888754444433
No 288
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A
Probab=41.70 E-value=13 Score=28.54 Aligned_cols=90 Identities=14% Similarity=0.248 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCCCCCCcccccccccccchhhhHHHHHHHhhhhcccC
Q 025599 35 MKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHN 114 (250)
Q Consensus 35 l~~qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~n 114 (250)
+..+.+.++.....|-.++.+-|..+ .|+.++.++|..+-. +-..+++..+ -..+
T Consensus 45 l~~~~~~l~~~F~~~D~d~~G~I~~~-----el~~~l~~~g~~~~~-----------------~e~~~l~~~~---D~d~ 99 (150)
T 2jjz_A 45 LPEKLTAFKEKYMEFDLNNEGEIDLM-----SLKRMMEKLGVPKTH-----------------LEMKKMISEV---TGGV 99 (150)
T ss_dssp HHHHHHHHHHHHTTSCCCTTSSBCHH-----HHHHHHHHTTCCCCH-----------------HHHHHHHHHH---HTTS
T ss_pred HHHHHHHHHHHHHHhCCCCcCcCCHH-----HHHHHHHHcCCCCCH-----------------HHHHHHHHHH---CCCC
Confidence 45566666666666666666666643 466777777754311 1111222222 2234
Q ss_pred CCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeE
Q 025599 115 GGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYE 158 (250)
Q Consensus 115 GGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~g~~ 158 (250)
.|.|+..|.+..+.+. .+++.+|.+.+..=|+|..
T Consensus 100 dg~I~~~eF~~~~~~~---------~~~i~~aF~~~D~d~~G~~ 134 (150)
T 2jjz_A 100 SDTISYRDFVNMMLGK---------RSAVLKLVMMFEGKANESS 134 (150)
T ss_dssp CSSBCHHHHHHHHHSS---------SCCHHHHHHC---------
T ss_pred CCcEeHHHHHHHHHHh---------HHHHHHHHHHHcCCCCCCC
Confidence 5899999998887753 4568999999888888874
No 289
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=41.59 E-value=63 Score=21.63 Aligned_cols=42 Identities=17% Similarity=0.186 Sum_probs=33.5
Q ss_pred CccchhHHHHHHHHHh---CCCccHHHHHHhcCCChHHHHHHHHH
Q 025599 173 TELNKDHNQILELAQA---QGFVTVDEVERRLSWTSGRAIDALDI 214 (250)
Q Consensus 173 ~El~~D~~~vLela~~---~g~vt~~~L~~~l~W~~~Ra~~~L~~ 214 (250)
..|+..+..|+.+.-. ....|..++++.+|.+...++..+..
T Consensus 9 ~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~r 53 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENK 53 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 4678888889888764 12469999999999999999886664
No 290
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=41.52 E-value=38 Score=29.31 Aligned_cols=79 Identities=14% Similarity=0.218 Sum_probs=51.7
Q ss_pred CCCCCHHHHHHHHhhccccCCCeEEEEECCEEEEEecCCccchhHHHHHHHHH-----hCC-CccHHHHHHhc-------
Q 025599 135 REAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQ-----AQG-FVTVDEVERRL------- 201 (250)
Q Consensus 135 ~~~IS~~DI~rAik~L~~LG~g~~vi~ig~~~~v~svp~El~~D~~~vLela~-----~~g-~vt~~~L~~~l------- 201 (250)
...|+.+||..|+..... . .+..+=..|+.++..+|..+. ..| .++..++.+.+
T Consensus 259 ~~~i~~~~v~~~~~~~~~--~-----------~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 325 (389)
T 1fnn_A 259 RKHIAPEDVRKSSKEVLF--G-----------ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEY 325 (389)
T ss_dssp CSSCCHHHHHHHHHHHSC--C-----------CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHhh--h-----------hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHc
Confidence 357999999999887541 0 011111234556666655333 245 78887775432
Q ss_pred C---CChHHHHHHHHHHHHcCCceeecC
Q 025599 202 S---WTSGRAIDALDILLEEGLAMVDDG 226 (250)
Q Consensus 202 ~---W~~~Ra~~~L~~l~~~Gl~WvD~q 226 (250)
| -+..+....|+.|+..|+++....
T Consensus 326 ~~~~~~~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 326 GERPRVHSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHhCCCeEEeee
Confidence 2 256888999999999999999765
No 291
>3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A
Probab=40.85 E-value=15 Score=33.03 Aligned_cols=77 Identities=16% Similarity=0.261 Sum_probs=50.4
Q ss_pred CCHHHHHHHHhhccccCCCeEEEEEC-CEEEEEecCCccchhHHHHHHHHHhCC---CccHHHHHHhcCCChHHHHHHHH
Q 025599 138 VSEDDCLRAISKLKVLGNGYEVISVG-KKKLVRSVPTELNKDHNQILELAQAQG---FVTVDEVERRLSWTSGRAIDALD 213 (250)
Q Consensus 138 IS~~DI~rAik~L~~LG~g~~vi~ig-~~~~v~svp~El~~D~~~vLela~~~g---~vt~~~L~~~l~W~~~Ra~~~L~ 213 (250)
-+++++...++.+.. .||..+++. |. ....|-..+-.+-+..| -+.++ .|-+|+...|...+.
T Consensus 139 ~~~~~~~~~a~~~~~--~G~~~~K~K~G~--------~~~~d~~~v~avR~~~g~~~~l~vD---an~~~~~~~a~~~~~ 205 (356)
T 3ro6_B 139 KPVEETLAEAREHLA--LGFRVLKVKLCG--------DEEQDFERLRRLHETLAGRAVVRVD---PNQSYDRDGLLRLDR 205 (356)
T ss_dssp CCHHHHHHHHHHHHH--TTCCEEEEECCS--------CHHHHHHHHHHHHHHHTTSSEEEEE---CTTCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--cCCCEEEEEeCC--------CHHHHHHHHHHHHHHhCCCCEEEEe---CCCCCCHHHHHHHHH
Confidence 367777776665543 478888874 32 23344443433333222 23333 478999999999999
Q ss_pred HHHHcCCceeecCC
Q 025599 214 ILLEEGLAMVDDGH 227 (250)
Q Consensus 214 ~l~~~Gl~WvD~q~ 227 (250)
.|..-|+.|+.+-.
T Consensus 206 ~l~~~~i~~iEqP~ 219 (356)
T 3ro6_B 206 LVQELGIEFIEQPF 219 (356)
T ss_dssp HHHHTTCCCEECCS
T ss_pred HHHhcCCCEEECCC
Confidence 99999999998644
No 292
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=40.71 E-value=56 Score=22.98 Aligned_cols=41 Identities=15% Similarity=0.367 Sum_probs=31.4
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHH
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDIL 215 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l 215 (250)
.|+..+..|+.+.-..|+ |..++++.+|.+...++..+...
T Consensus 37 ~L~~~~r~vl~l~~~~g~-s~~eIA~~lgis~~tV~~~l~ra 77 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-STAQIATDLGIAEGTVKSRLHYA 77 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-CHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-CHHHHHHHHCcCHHHHHHHHHHH
Confidence 456778888887666665 99999999999988777666543
No 293
>2lf6_A Effector protein hopab1; type III effector, structural genomics, PSI-biology, protein structure initiative; NMR {Pseudomonas syringae PV}
Probab=40.59 E-value=55 Score=24.69 Aligned_cols=60 Identities=15% Similarity=0.299 Sum_probs=45.9
Q ss_pred HHHHHHHHhhcHhHHHHHHHHHHHH---HHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCCC
Q 025599 14 AVARDQYRLLGENVAKLRTDLMKEQ---LATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLA 80 (250)
Q Consensus 14 ~~~~~~~~~~g~~l~~~~~~~l~~q---L~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL~ 80 (250)
..++..+.+.|...+..-++.|..| |+.++.+|+.++-.++. |- +.+| .-+.+.||||-.
T Consensus 9 r~~r~amrNrg~n~adaaL~~L~qqGvdmerLr~Al~~~i~~~~p-iP--~Di~----raL~~vGI~p~i 71 (101)
T 2lf6_A 9 RLASAARHNHSANQTNEALRRLTQEGVDMERLRTSLGRYIMSLEP-LP--PDLR----RALESVGINPFI 71 (101)
T ss_dssp HHHHHHCCCCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHSSSCC-CC--HHHH----HHHHHHTCCSCC
T ss_pred chhHHHHHhccccHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC-CC--HHHH----HHHHcCCCCCCC
Confidence 3456677778888888888888887 99999999999986653 32 2344 677899999975
No 294
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=40.55 E-value=23 Score=25.26 Aligned_cols=45 Identities=13% Similarity=0.251 Sum_probs=37.9
Q ss_pred HHHHHHhhhhcccC-CCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccC
Q 025599 101 VQIVEICLATRPHN-GGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLG 154 (250)
Q Consensus 101 vqIvevC~~tr~~n-GGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG 154 (250)
.+|.+++.....++ ||-.+..|+...+. ||+.=|.+-++.|+.-|
T Consensus 7 ~~IL~~I~~~i~~~~g~~psv~EIa~~lg---------vS~~TVrr~L~~Le~kG 52 (77)
T 2jt1_A 7 TKIISIVQERQNMDDGAPVKTRDIADAAG---------LSIYQVRLYLEQLHDVG 52 (77)
T ss_dssp HHHHHHHHHHHHHHTTSCEEHHHHHHHHT---------CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhccCCCcCHHHHHHHHC---------CCHHHHHHHHHHHHHCC
Confidence 47888888887775 99999999988875 68888999999998755
No 295
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=40.39 E-value=35 Score=34.13 Aligned_cols=69 Identities=19% Similarity=0.154 Sum_probs=53.3
Q ss_pred ccCCCeEEEEECCEEEEEecCCccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 152 VLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 152 ~LG~g~~vi~ig~~~~v~svp~El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
.||.+=--..++++.+.-. .|+-|..||-+-.....+|.++|.+..|.+..-.+.+|.-|++.|++...
T Consensus 568 ~lg~~~l~~~~~~~~~~l~----vs~~Qa~iLllFn~~~~~t~~ei~~~t~i~~~~l~r~L~~l~k~~iL~~~ 636 (760)
T 1ldj_A 568 QLSKGELVTNCFKNRYTLQ----ASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVLE 636 (760)
T ss_dssp GGCCCEEEESSSSSCCEEE----CCHHHHHHHHGGGSSSEEEHHHHHHHTCCCHHHHHHHHHHHHHTTTEECS
T ss_pred ccccEEEEEEECCceEEEE----EcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcceeC
Confidence 4666543333444333333 47889999987777789999999999999999999999999999999744
No 296
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=39.94 E-value=66 Score=19.95 Aligned_cols=36 Identities=14% Similarity=0.302 Sum_probs=21.9
Q ss_pred cCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccc
Q 025599 113 HNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKV 152 (250)
Q Consensus 113 ~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~ 152 (250)
.+-|.|+..|+...+... ...++++++...++.+-.
T Consensus 13 d~~G~i~~~el~~~l~~~----~~~~~~~~~~~~~~~~D~ 48 (67)
T 1tiz_A 13 NKDGKLSLDEFREVALAF----SPYFTQEDIVKFFEEIDV 48 (67)
T ss_dssp TSSSCEEHHHHHHHHHHT----CTTSCHHHHHHHHHHHCC
T ss_pred CCCCcCcHHHHHHHHHHh----CCCCCHHHHHHHHHHHCC
Confidence 344777777777666653 234667666666655543
No 297
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Probab=39.90 E-value=1.1e+02 Score=28.67 Aligned_cols=36 Identities=19% Similarity=0.454 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCC
Q 025599 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDP 78 (250)
Q Consensus 38 qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDP 78 (250)
+++.++..+..|-.++.+.|..+ +|+.++.++|.+|
T Consensus 310 ei~el~~~F~~fD~D~dG~Is~~-----EL~~~L~~lg~~~ 345 (450)
T 3sg6_A 310 QIAEFKEAFSLFDKDGDGTITTK-----ELGTVMRSLGQNP 345 (450)
T ss_dssp HHHHHHHHHHHHCTTCSSEECHH-----HHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHCCCCCCcCcHH-----HHHHHHHHhCCCC
Confidence 44566777777777777888764 5667777888764
No 298
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=39.89 E-value=36 Score=26.87 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=31.6
Q ss_pred CccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 191 FVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 191 ~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
.+|.++|++-+|-++.-.-.+|..|.++|++=++
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~ 202 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKLS 202 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeC
Confidence 6899999999999999999999999999998554
No 299
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=39.66 E-value=1e+02 Score=26.80 Aligned_cols=73 Identities=16% Similarity=0.299 Sum_probs=53.5
Q ss_pred CCCCHHHHHHHHhhccccCCCeEEEEECCEEEEEecCCccchhHHHHHH-HHHh--CCCccHHHHHHhcCCChHHHHHHH
Q 025599 136 EAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILE-LAQA--QGFVTVDEVERRLSWTSGRAIDAL 212 (250)
Q Consensus 136 ~~IS~~DI~rAik~L~~LG~g~~vi~ig~~~~v~svp~El~~D~~~vLe-la~~--~g~vt~~~L~~~l~W~~~Ra~~~L 212 (250)
..||.+++..|++.+.. + ...++..+..+|+ +++. .|.++.+.|++.+|.++.-.+.+.
T Consensus 236 ~~It~~~v~~al~~~~~----------~--------~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~ 297 (334)
T 1in4_A 236 DRINTDIVLKTMEVLNI----------D--------DEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVY 297 (334)
T ss_dssp SSBCHHHHHHHHHHHTC----------C--------TTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHT
T ss_pred CCcCHHHHHHHHHHhCC----------C--------cCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHH
Confidence 46999999999998652 1 1133433334555 4553 678999999999999988888888
Q ss_pred H-HHHHcCCceeecC
Q 025599 213 D-ILLEEGLAMVDDG 226 (250)
Q Consensus 213 ~-~l~~~Gl~WvD~q 226 (250)
+ .|++.|++=+...
T Consensus 298 ~~~l~~~g~i~~~~~ 312 (334)
T 1in4_A 298 EPYLLQAGFLARTPR 312 (334)
T ss_dssp HHHHHHTTSEEEETT
T ss_pred HHHHHHcCCeecccc
Confidence 8 8999999866643
No 300
>3b09_A Peptidyl-prolyl CIS-trans isomerase; Val-Leu zipper, helices, chaperone; 1.90A {Shewanella}
Probab=39.33 E-value=71 Score=23.26 Aligned_cols=55 Identities=22% Similarity=0.256 Sum_probs=39.8
Q ss_pred cchhhhHHHHHHHhhhhcccCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhcc
Q 025599 94 DFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLK 151 (250)
Q Consensus 94 dfy~eLavqIvevC~~tr~~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~ 151 (250)
..-|-||.+|.+-.... ...+ +.++.+..-|..+-......+|++++..+++.+.
T Consensus 31 K~SYaIG~~mG~~L~~~-g~~~--lD~dav~~Gl~Dal~Gk~~~ls~eei~~~l~~~~ 85 (88)
T 3b09_A 31 HASYGVGRQMGEQLAAN-SFEG--IDIPAVQAGLADAFAGKESAVSMEELQVAFTEIS 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHS-CCTT--CCHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-Cccc--cCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 35688888888765432 1111 6899999999987655456799999999998764
No 301
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=39.08 E-value=20 Score=33.72 Aligned_cols=115 Identities=15% Similarity=0.154 Sum_probs=74.1
Q ss_pred CceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEECC---EEEEEecCCccchhHHHHHHHH-HhCCC
Q 025599 116 GLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGK---KKLVRSVPTELNKDHNQILELA-QAQGF 191 (250)
Q Consensus 116 Gli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~g~~vi~ig~---~~~v~svp~El~~D~~~vLela-~~~g~ 191 (250)
-.|+..++...+... + .-.++++..+.+.|+-+|. ++.+.+ +.+|-.-|.=|...-.+++..- ...|.
T Consensus 236 ~~i~~~~~~~l~~~~-~----~~~~~~~~~~~~~L~~~G~---il~f~d~~l~d~vvL~p~Wl~~~v~~ii~~~~~~~G~ 307 (535)
T 3dpu_A 236 RYLNRTEVEKICNDS-G----ITDPGERKTLLGYLNNLGI---VLYFEALDLSEIYVLDPHWVTIGVYRIINSSKTKNGH 307 (535)
T ss_dssp SEECHHHHHHHHHHT-T----CCCHHHHHHHHHHHHHTTS---SBCCTTTCCSSSCEECHHHHHHHHHHHHHCTTSTTSE
T ss_pred CcccHHHHHHHHHHc-C----CCCHHHHHHHHHHHHHCcE---EEEcCCCCcCCcEEECcHHHHHHHHHHhCCcCCCCcE
Confidence 356666665555543 2 2368889999999999885 332332 2234444655665444444332 24799
Q ss_pred ccHHHHHHhcC------------------CChHHHHHHHHHHHHcCCceeecCCCCCCcceeecCccCCC
Q 025599 192 VTVDEVERRLS------------------WTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWFPCASSIS 243 (250)
Q Consensus 192 vt~~~L~~~l~------------------W~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw~P~l~~~~ 243 (250)
++.++|..-+. -+.......|.-|.+-++++--+ +..|.+|+++...
T Consensus 308 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lm~~f~l~~~~~-----~~~~lvP~lL~~~ 372 (535)
T 3dpu_A 308 LNTSALGYILNEEQIRCDEYDPAKNNKFTYTLLEQRYLLDIMKQFELCYDEG-----KGLFIIPSNLPTQ 372 (535)
T ss_dssp EEGGGHHHHHHTC-------------CCCCCHHHHHHHHHHHHHTTSCEECS-----SSEEECGGGSCSC
T ss_pred EcHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHHHcCeEEEcC-----CCcEEEeecCCCC
Confidence 99999986532 22344556777889999998753 4689999999873
No 302
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=38.98 E-value=1.2e+02 Score=22.58 Aligned_cols=100 Identities=11% Similarity=0.081 Sum_probs=62.3
Q ss_pred cCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEEC--CEEEEEecCCccchhHHHHHHHHH---
Q 025599 113 HNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVG--KKKLVRSVPTELNKDHNQILELAQ--- 187 (250)
Q Consensus 113 ~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~g~~vi~ig--~~~~v~svp~El~~D~~~vLela~--- 187 (250)
.+|..++.+++.... + ++++.+..++..|..=|. ++.++ +..++-+.+ -...=...+++..+
T Consensus 13 ~~~~~~~~~~l~~~~----~-----l~~~~l~~~l~~l~~~~~---~~~~~~~~~~~~~~~~-~~~~l~~~l~~~L~~yH 79 (135)
T 2v9v_A 13 EHREGLDWQEAATRA----S-----LSLEETRKLLQSMAAAGQ---VTLLRVENDLYAISTE-RYQAWWQAVTRALEEFH 79 (135)
T ss_dssp HCSSCEEHHHHHHHH----T-----CCHHHHHHHHHHHHHTTC---EEEEEETTEEEEEEHH-HHHHHHHHHHHHHHHHH
T ss_pred HcCcCCCHHHHHHHh----C-----CCHHHHHHHHHHHHhCCc---EEEEecCCCeEEecHH-HHHHHHHHHHHHHHHHH
Confidence 444435446664432 2 578888888888775443 55554 443332221 22222334555544
Q ss_pred ----hCCCccHHHHHHhc--CCChHHHHHHHHHHHHcCCceeec
Q 025599 188 ----AQGFVTVDEVERRL--SWTSGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 188 ----~~g~vt~~~L~~~l--~W~~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
.+-.+..++|+..+ ..+.......|+.|+++|.+-++.
T Consensus 80 ~~~P~~~G~~keeLr~~~~~~~~~~~~~~ll~~l~~~g~l~~~~ 123 (135)
T 2v9v_A 80 SRYPLRPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQLAA 123 (135)
T ss_dssp HHCTTSSCEEHHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEECS
T ss_pred HhCCCccCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCEEecC
Confidence 25677999998875 367888899999999999998874
No 303
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=38.85 E-value=42 Score=27.83 Aligned_cols=51 Identities=12% Similarity=0.075 Sum_probs=40.4
Q ss_pred ccchhHHHHHHHHHhCCC------ccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 174 ELNKDHNQILELAQAQGF------VTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 174 El~~D~~~vLela~~~g~------vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
+...+|..++......|. +|.+.+++.++.+..-.-..|..|++.|++=+.
T Consensus 4 ~~~~~~l~~l~~l~~~~~l~~~~~~s~s~aA~~L~isq~avSr~I~~LE~~~L~~R~ 60 (230)
T 3cta_A 4 ETDDQYYRAIKKIKEAAEASNRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRT 60 (230)
T ss_dssp ---CHHHHHHHHHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccHHHHHHHHHHHHHhcccccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
Confidence 345567777776654444 889999999999999999999999999988776
No 304
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=38.52 E-value=66 Score=24.16 Aligned_cols=40 Identities=23% Similarity=0.271 Sum_probs=32.4
Q ss_pred hHHHHHHHHHhCCC--ccHHHHHHhc-CCChHHHHHHHHHHHH
Q 025599 178 DHNQILELAQAQGF--VTVDEVERRL-SWTSGRAIDALDILLE 217 (250)
Q Consensus 178 D~~~vLela~~~g~--vt~~~L~~~l-~W~~~Ra~~~L~~l~~ 217 (250)
+...||..|+.+|. =|-.-|+..| +|++...+++..+|++
T Consensus 40 ~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 40 ADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQ 82 (95)
T ss_dssp HHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 45568899998654 3667799999 5999999999999876
No 305
>3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi}
Probab=38.29 E-value=12 Score=34.09 Aligned_cols=76 Identities=18% Similarity=0.284 Sum_probs=50.3
Q ss_pred CCHHHHHHHHhhccccCCCeEEEEEC-CEEEEEecCCccchhHHHHHHHHHhCCC---ccHHHHHHhcCCChHHHHHHHH
Q 025599 138 VSEDDCLRAISKLKVLGNGYEVISVG-KKKLVRSVPTELNKDHNQILELAQAQGF---VTVDEVERRLSWTSGRAIDALD 213 (250)
Q Consensus 138 IS~~DI~rAik~L~~LG~g~~vi~ig-~~~~v~svp~El~~D~~~vLela~~~g~---vt~~~L~~~l~W~~~Ra~~~L~ 213 (250)
-+++++.++++.+.. .||..+++. |. ....|-..|-.+-+..|. +.++ .|-+|+...|...+.
T Consensus 144 ~~~e~~~~~a~~~~~--~G~~~iKiK~G~--------~~~~d~~~v~avR~a~g~~~~l~vD---an~~~~~~~a~~~~~ 210 (378)
T 3eez_A 144 KSVEETRAVIDRYRQ--RGYVAHSVKIGG--------DVERDIARIRDVEDIREPGEIVLYD---VNRGWTRQQALRVMR 210 (378)
T ss_dssp CCHHHHHHHHHHHHH--TTCCEEEEECCS--------CHHHHHHHHHHHTTSCCTTCEEEEE---CTTCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh--CCCCEEEeccCC--------CHHHHHHHHHHHHHHcCCCceEEEE---CCCCCCHHHHHHHHH
Confidence 478888888877644 579988875 32 233343333322222332 3333 488999999999999
Q ss_pred HHHHcCCceeecCC
Q 025599 214 ILLEEGLAMVDDGH 227 (250)
Q Consensus 214 ~l~~~Gl~WvD~q~ 227 (250)
.|...|+ |+.+-.
T Consensus 211 ~l~~~~i-~iEqP~ 223 (378)
T 3eez_A 211 ATEDLHV-MFEQPG 223 (378)
T ss_dssp HTGGGTC-CEECCS
T ss_pred HhccCCe-EEecCC
Confidence 9999999 998544
No 306
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi}
Probab=38.28 E-value=82 Score=25.24 Aligned_cols=38 Identities=11% Similarity=0.233 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHH-cCCCCC
Q 025599 37 EQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAK-VGVDPL 79 (250)
Q Consensus 37 ~qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~s-iGVDPL 79 (250)
.++..++.....|-.++.+.|..+ .|...+.+ +|.+|.
T Consensus 45 ~~~~~l~~~F~~~D~d~dG~I~~~-----El~~~l~~~lg~~~~ 83 (219)
T 3cs1_A 45 EAKQRRIELFKKFDKNETGKLCYD-----EVYSGCLEVLKLDEF 83 (219)
T ss_dssp HHHHHHHHHHHHHCTTCSSCBCHH-----HHHHHHHHTTCGGGT
T ss_pred HHHHHHHHHHHHhCCCCCCcCcHH-----HHHHHHHHHhCCCcc
Confidence 346667777777878888888754 56677766 788764
No 307
>3dpt_A ROCO, RAB family protein; alpha-beta-protein, signaling protein; 2.90A {Chlorobaculum tepidum}
Probab=37.90 E-value=18 Score=32.76 Aligned_cols=132 Identities=14% Similarity=0.159 Sum_probs=88.1
Q ss_pred cchhhhHHHHHHHhhhhcccCCCceeHHHHHHHHHhhcCCCCCCCCH-HHHHHHHhhccccCCCeEEEEECC---EEEEE
Q 025599 94 DFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSE-DDCLRAISKLKVLGNGYEVISVGK---KKLVR 169 (250)
Q Consensus 94 dfy~eLavqIvevC~~tr~~nGGli~l~el~~~v~k~R~~~~~~IS~-~DI~rAik~L~~LG~g~~vi~ig~---~~~v~ 169 (250)
.=|++|-.++.+.-. . . -.|+.+|+....... | |++ +|+..|++.|.-+|. |+-+.. +.+|-
T Consensus 16 ~sW~~l~~~L~~~~~-~--~--~~is~~e~~~i~~~~-g-----l~~~~~~~~~l~~LH~lG~---il~f~d~~~~d~V~ 81 (332)
T 3dpt_A 16 PSWIKVKEKLVEATT-A--Q--RYLNRTEVEKICNDS-G-----ITDPGERKTLLGYLNNLGI---VLYFEALDLSEIYV 81 (332)
T ss_dssp -CHHHHHHHHHHHHH-H--S--SEECHHHHHHHHHHT-T-----CCCHHHHHHHHHHHHHTTS---SEECTTTCCSTTCE
T ss_pred HHHHHHHHHHHhhhc-C--C--CeecHHHHHHHHHHc-C-----CCCHHHHHHHHHHHHHCCE---EEEecCCcccCeEE
Confidence 335677667766422 1 2 489999998877654 3 555 689999999999996 444542 33444
Q ss_pred ecCCccchhHHHHHHHHH-hCCCccHHHHHHhcCC------------------ChHHHHHHHHHHHHcCCceeecCCCCC
Q 025599 170 SVPTELNKDHNQILELAQ-AQGFVTVDEVERRLSW------------------TSGRAIDALDILLEEGLAMVDDGHRDR 230 (250)
Q Consensus 170 svp~El~~D~~~vLela~-~~g~vt~~~L~~~l~W------------------~~~Ra~~~L~~l~~~Gl~WvD~q~~~~ 230 (250)
.-|.=|...-..++.... .+|.++.++|..-+.= +.......|.-|.+-+++.--+
T Consensus 82 LdP~Wl~~~v~~il~~~~~~~G~l~~~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~LMekfeLc~~~~----- 156 (332)
T 3dpt_A 82 LDPHWVTIGVYRIINSSKTKNGHLNTSALGYILNEEQIRCDEYDPAKNNKFTYTLLEQRYLLDIMKQFELCYDEG----- 156 (332)
T ss_dssp ECHHHHHHHHHHHHHCGGGTTSEEESTTHHHHHHTCCCC----------CCCCCHHHHHHHHHHHHHTTSCEECS-----
T ss_pred EChHHHHHHHHHHHHHhhhcCceEEHHHHHHHhcccccccccccccccccccCchhhHHHHHHHHHHcCceEecC-----
Confidence 446666665555665433 4899999999865431 2334455777888888887653
Q ss_pred CcceeecCccCCCc
Q 025599 231 KRRYWFPCASSISS 244 (250)
Q Consensus 231 e~~Yw~P~l~~~~~ 244 (250)
...|-+|+++....
T Consensus 157 ~~~yliP~lL~~~~ 170 (332)
T 3dpt_A 157 KGLFIIPSNLPTQI 170 (332)
T ss_dssp SSEEECGGGSCSCC
T ss_pred CCeEEeeccCCCCC
Confidence 26799999988654
No 308
>3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199}
Probab=37.82 E-value=15 Score=33.69 Aligned_cols=81 Identities=14% Similarity=0.145 Sum_probs=52.1
Q ss_pred CCHHHHHHHHhhcccc-CCCeEEEEEC-CEEEEEecCCccchhHHHHHHHHHhCC---CccHHHHHHhcCCChHHHHHHH
Q 025599 138 VSEDDCLRAISKLKVL-GNGYEVISVG-KKKLVRSVPTELNKDHNQILELAQAQG---FVTVDEVERRLSWTSGRAIDAL 212 (250)
Q Consensus 138 IS~~DI~rAik~L~~L-G~g~~vi~ig-~~~~v~svp~El~~D~~~vLela~~~g---~vt~~~L~~~l~W~~~Ra~~~L 212 (250)
-+++++.+.++.+..- ++||..+++. |. ..+..|-..|-.+-+..| -+.++ .|-+|+...|...+
T Consensus 170 ~~~e~~~~~a~~~~~~~~~G~~~iKlKvG~-------~~~~~d~~~v~avR~a~G~~~~l~vD---aN~~~~~~~A~~~~ 239 (390)
T 3ugv_A 170 SPAEVAAEAVELKAEGQGTGFKGLKLRMGR-------DDPAVDIETAEAVWDAVGRDTALMVD---FNQGLDMAEAMHRT 239 (390)
T ss_dssp CHHHHHHHHHHHHHTTCTTCCSEEEEECCC-------SSHHHHHHHHHHHHHHHCTTSEEEEE---CTTCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhCCCcEEEEecCC-------CCHHHHHHHHHHHHHHhCCCCEEEEE---CCCCCCHHHHHHHH
Confidence 4677777666655332 4489998874 32 134445444433333222 23332 47899999999999
Q ss_pred HHHHHcCCceeecCCC
Q 025599 213 DILLEEGLAMVDDGHR 228 (250)
Q Consensus 213 ~~l~~~Gl~WvD~q~~ 228 (250)
..|..-|+.|+.+-.+
T Consensus 240 ~~l~~~~i~~iEqP~~ 255 (390)
T 3ugv_A 240 RQIDDLGLEWIEEPVV 255 (390)
T ss_dssp HHHTTSCCSEEECCSC
T ss_pred HHHHhhCCCEEECCCC
Confidence 9999999999986543
No 309
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=37.69 E-value=81 Score=20.34 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=32.1
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHH
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDIL 215 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l 215 (250)
.|+..+..++.+.-..| .|..++++.+|.+...++..+...
T Consensus 15 ~L~~~~r~il~l~~~~g-~s~~eIA~~lgis~~tv~~~~~ra 55 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-LSYADAAAVCGCPVGTIRSRVARA 55 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-CCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 46777888888765555 599999999999988887776644
No 310
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=37.41 E-value=1.3e+02 Score=22.45 Aligned_cols=94 Identities=10% Similarity=0.091 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCCCCCCcccccccccccchhhhHHHHHHH
Q 025599 27 VAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEI 106 (250)
Q Consensus 27 l~~~~~~~l~~qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvev 106 (250)
+...++..+-..+..++.....|-.++.+.|..+ .|+.++.++|..+ . . +-..+++..
T Consensus 57 i~~~eF~~~~~~~~~~~~~F~~~D~d~~G~i~~~-----el~~~l~~~g~~~-~-~---------------~~~~~~~~~ 114 (165)
T 1k94_A 57 MGFNAFKELWAALNAWKENFMTVDQDGSGTVEHH-----ELRQAIGLMGYRL-S-P---------------QTLTTIVKR 114 (165)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHCTTCCSBCCHH-----HHHHHHHHTTCCC-C-H---------------HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCCCceECHH-----HHHHHHHHhCCCC-C-H---------------HHHHHHHHH
Confidence 4444455555555666666666666666666554 4666777777432 1 0 112223332
Q ss_pred hhhhcccCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCe
Q 025599 107 CLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGY 157 (250)
Q Consensus 107 C~~tr~~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~g~ 157 (250)
+ .+.|.|+..|.+..+.+. +++..+.+.+-+=|.|+
T Consensus 115 ~-----d~dg~i~~~eF~~~~~~~----------~~~~~~F~~~D~d~~G~ 150 (165)
T 1k94_A 115 Y-----SKNGRIFFDDYVACCVKL----------RALTDFFRKRDHLQQGS 150 (165)
T ss_dssp H-----CBTTBCBHHHHHHHHHHH----------HHHHHHHHTTCTTCCSE
T ss_pred h-----CCCCeEcHHHHHHHHHHH----------HHHHHHHHHhCCCCCCe
Confidence 2 345788888888777653 56777777776666665
No 311
>2o34_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: MSE; 1.95A {Desulfovibrio vulgaris} SCOP: d.96.2.2
Probab=37.17 E-value=57 Score=28.42 Aligned_cols=52 Identities=21% Similarity=0.352 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc--------ccccC-hhHHHHHHHHHHHcCCCCCCCCCc
Q 025599 33 DLMKEQLATFRSQLEDFARKHKN--------DIRKN-PTFRSQFHEMCAKVGVDPLASNKG 84 (250)
Q Consensus 33 ~~l~~qL~~F~~~L~~Fa~~h~~--------eI~~d-p~fR~~F~~mC~siGVDPL~s~k~ 84 (250)
+.....+..|+..|++++.+|.. .+..+ |.+=++-..-|...||||.+.=+|
T Consensus 47 ~~~~~~~~~~r~~l~~~i~~~p~f~~sl~p~~~~~~ap~i~~~M~~A~~~~gv~PmaaVaG 107 (250)
T 2o34_A 47 TPMAAYVGELRAQLKVWMEFQPAFRHSLVPVEVPEGAPEVVRRMAHGARLVGVGPFAAVAG 107 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTTTCSSCCCCCTTSCHHHHHHHHHHHHHTCCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhChhhhccCCCCCCCCCCCHHHHHHHHHHHHhCCChHHHHHh
Confidence 45667778899999999988876 22334 666444555567799999985544
No 312
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=36.80 E-value=65 Score=23.00 Aligned_cols=42 Identities=19% Similarity=0.335 Sum_probs=34.6
Q ss_pred CccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHH
Q 025599 173 TELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILL 216 (250)
Q Consensus 173 ~El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~ 216 (250)
..|+..+..|+.+. ..| .|..++++.+|.+..-++..+..+.
T Consensus 26 ~~Lt~~e~~vl~l~-~~g-~s~~eIA~~l~is~~tV~~~l~r~~ 67 (95)
T 3c57_A 26 SGLTDQERTLLGLL-SEG-LTNKQIADRMFLAEKTVKNYVSRLL 67 (95)
T ss_dssp -CCCHHHHHHHHHH-HTT-CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHH-HcC-CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46888899999987 555 4999999999999999988887554
No 313
>3rii_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; alpha-beta-alpha fold, thiol hydroalse, cysteine protease, deubiquitinating enzyme; 2.00A {Homo sapiens} SCOP: d.3.1.0 PDB: 3ris_A 3sqa_A 3tb3_A 3a7s_A
Probab=36.80 E-value=14 Score=32.03 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=19.2
Q ss_pred ccccChhHHHHHHHHHHHcCCCCC
Q 025599 56 DIRKNPTFRSQFHEMCAKVGVDPL 79 (250)
Q Consensus 56 eI~~dp~fR~~F~~mC~siGVDPL 79 (250)
.|-+||++ |.+++..+||.++
T Consensus 15 pLESnP~V---ft~l~~~LGv~~~ 35 (233)
T 3rii_A 15 LMESDPGV---FTELIKGFGCRGA 35 (233)
T ss_dssp CCCCCHHH---HHHHHHHTTCBSE
T ss_pred eecCCHHH---HHHHHHHhCCCCc
Confidence 68899999 9999999999865
No 314
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=36.78 E-value=61 Score=22.51 Aligned_cols=44 Identities=27% Similarity=0.337 Sum_probs=35.9
Q ss_pred cCCccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHH
Q 025599 171 VPTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILL 216 (250)
Q Consensus 171 vp~El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~ 216 (250)
.-..|+..+..|+.+. ..| .|..++++.+|.+..-++..+..+.
T Consensus 18 ~~~~Lt~~e~~vl~l~-~~g-~s~~eIA~~l~is~~tV~~~l~r~~ 61 (82)
T 1je8_A 18 DVNQLTPRERDILKLI-AQG-LPNKMIARRLDITESTVKVHVKHML 61 (82)
T ss_dssp CGGGSCHHHHHHHHHH-TTT-CCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHccCCHHHHHHHHHH-HcC-CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3457899999999885 455 5999999999999998888887553
No 315
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=36.37 E-value=31 Score=29.64 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=34.3
Q ss_pred HHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 181 QILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 181 ~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
.+|.+...+.-+|.+.|++.+||+.+.++.+|..|- .+=.|++.
T Consensus 26 ~llr~la~Grpv~~~~LA~~~g~~~~~v~~~L~~l~---~~~~D~~G 69 (220)
T 3f2g_A 26 PLLRELAKGRPVSRTTLAGILDWPAERVAAVLEQAT---STEYDKDG 69 (220)
T ss_dssp HHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHCT---TCEECTTS
T ss_pred HHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHhCC---cEEECCCC
Confidence 455555566789999999999999999999999883 33466654
No 316
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=36.34 E-value=74 Score=21.22 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=32.4
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHH
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILL 216 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~ 216 (250)
.|+..+..|+.+. ..| .|..++++.+|.+...++..+..+.
T Consensus 16 ~L~~~e~~vl~l~-~~g-~s~~eIA~~l~is~~tV~~~~~r~~ 56 (79)
T 1x3u_A 16 TLSERERQVLSAV-VAG-LPNKSIAYDLDISPRTVEVHRANVM 56 (79)
T ss_dssp HHCHHHHHHHHHH-TTT-CCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHH-HcC-CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4667788888875 444 5999999999999998888887554
No 317
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Probab=36.33 E-value=33 Score=26.71 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCC
Q 025599 36 KEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDP 78 (250)
Q Consensus 36 ~~qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDP 78 (250)
..++..++.....|-.++.+.|..+ .|+.++.++|+.|
T Consensus 33 ~~~~~~l~~~F~~~D~d~~G~i~~~-----e~~~~l~~~~~~~ 70 (204)
T 3e3r_A 33 ASGIQGLARFFRQLDRDGSRSLDAD-----EFRQGLAKLGLVL 70 (204)
T ss_dssp -------CHHHHHHCTTCCSSBCHH-----HHHHHHHTTTCCC
T ss_pred chhHHHHHHHHHHHccCCCCCcCHH-----HHHHHHHHcCCCC
Confidence 3455566677777777777777654 5777888888764
No 318
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=36.12 E-value=42 Score=29.71 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=33.0
Q ss_pred CCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 189 QGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 189 ~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
.|.+|+++|++.+|.+....+..|..|+..|++=.|
T Consensus 48 ~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l~~~ 83 (363)
T 3dp7_A 48 REGYTLQEISGRTGLTRYAAQVLLEASLTIGTILLE 83 (363)
T ss_dssp TTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeEec
Confidence 478999999999999999999999999999999554
No 319
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=35.99 E-value=86 Score=21.84 Aligned_cols=43 Identities=19% Similarity=0.120 Sum_probs=33.4
Q ss_pred ccchhHHHHHHHHHh---CCCccHHHHHHhcCCChHHHHHHHHHHH
Q 025599 174 ELNKDHNQILELAQA---QGFVTVDEVERRLSWTSGRAIDALDILL 216 (250)
Q Consensus 174 El~~D~~~vLela~~---~g~vt~~~L~~~l~W~~~Ra~~~L~~l~ 216 (250)
.|+..+..|+.+.-. ....|..++++.+|.+...++..+....
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~ 63 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKAL 63 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 467778888877654 1346999999999999999998877543
No 320
>4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo sapiens}
Probab=35.40 E-value=18 Score=33.77 Aligned_cols=78 Identities=14% Similarity=0.213 Sum_probs=53.7
Q ss_pred CCHHHHHHHHhhccccCCCeEEEEEC-CEEEEEecCCccchhHHHHHHHHHhCCC---ccHHHHHHhcCCChHHHHHHHH
Q 025599 138 VSEDDCLRAISKLKVLGNGYEVISVG-KKKLVRSVPTELNKDHNQILELAQAQGF---VTVDEVERRLSWTSGRAIDALD 213 (250)
Q Consensus 138 IS~~DI~rAik~L~~LG~g~~vi~ig-~~~~v~svp~El~~D~~~vLela~~~g~---vt~~~L~~~l~W~~~Ra~~~L~ 213 (250)
.|++++.+.++.... .||+.+++. |. .+..|-..|-.+-+..|. +.++ .|-+|+...|...+.
T Consensus 200 ~~~e~~~~~a~~~~~--~Gf~~~KlKvG~--------~~~~d~~~v~avR~a~G~~~~l~vD---aN~~~~~~~A~~~~~ 266 (441)
T 4a35_A 200 YSDDTLKQLCAQALK--DGWTRFKVKVGA--------DLQDDMRRCQIIRDMIGPEKTLMMD---ANQRWDVPEAVEWMS 266 (441)
T ss_dssp CCHHHHHHHHHHHHH--TTCCEEEEECSS--------CHHHHHHHHHHHHHHHCTTSEEEEE---CTTCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--CCCCEEEEcCCC--------CHHHHHHHHHHHHHHhCCCCeEEEE---CCCCCCHHHHHHHHH
Confidence 489999988887644 479998874 32 344454444333333232 2222 477999999999999
Q ss_pred HHHHcCCceeecCCC
Q 025599 214 ILLEEGLAMVDDGHR 228 (250)
Q Consensus 214 ~l~~~Gl~WvD~q~~ 228 (250)
.|..-|+.|+.+-.+
T Consensus 267 ~L~~~~~~~iEeP~~ 281 (441)
T 4a35_A 267 KLAKFKPLWIEEPTS 281 (441)
T ss_dssp HHGGGCCSEEECCSC
T ss_pred hhcccCccEEeCCCC
Confidence 999999999986553
No 321
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=35.00 E-value=87 Score=23.44 Aligned_cols=59 Identities=14% Similarity=0.105 Sum_probs=41.3
Q ss_pred chhHHHHHHHHHh---CCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeecCCCCCCcceeecCc
Q 025599 176 NKDHNQILELAQA---QGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDDGHRDRKRRYWFPCA 239 (250)
Q Consensus 176 ~~D~~~vLela~~---~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw~P~l 239 (250)
+.++..+.+-+.. ....++.+|...+|.+...++..|..|.+.|.+=.=. +..|+-|..
T Consensus 2 ~~~~~~l~~~i~~~~~~~p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~-----~~~~~~~~~ 63 (121)
T 2pjp_A 2 SEEQQAIWQKAEPLFGDEPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIV-----KDRYYRNDR 63 (121)
T ss_dssp CHHHHHHHHHHGGGCSSSCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE-----TTEEEEHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEec-----CCceECHHH
Confidence 4455555544331 2456999999999999999999999999999654321 355665543
No 322
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}
Probab=34.58 E-value=50 Score=25.95 Aligned_cols=44 Identities=14% Similarity=0.137 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHhhccccCCCeEEEEECCEEEEEecCCccchhHHHHHHHHH--hCCCccHHHHHHhc
Q 025599 136 EAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQ--AQGFVTVDEVERRL 201 (250)
Q Consensus 136 ~~IS~~DI~rAik~L~~LG~g~~vi~ig~~~~v~svp~El~~D~~~vLela~--~~g~vt~~~L~~~l 201 (250)
..||.+++.++++.+ | ..+.++ ..++..+. ..|.||.+++...+
T Consensus 143 G~Is~~El~~~l~~~---g---------------~~~~~~----~~~~~~~D~d~dG~I~~~EF~~~~ 188 (208)
T 2hpk_A 143 GTVDVDELKTMMKAF---D---------------VPQEAA----YTFFEKADTDKSGKLERTELVHLF 188 (208)
T ss_dssp SSBCHHHHHHHHHHT---T---------------SCTTHH----HHHHHHHCTTCCSSBCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHh---C---------------cCHHHH----HHHHHHhCCCCCCcCcHHHHHHHH
Confidence 468888888888664 2 012222 23555544 36899999987543
No 323
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=34.28 E-value=47 Score=28.44 Aligned_cols=35 Identities=11% Similarity=0.100 Sum_probs=32.6
Q ss_pred CCccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 190 GFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 190 g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
|.+|+++|++.+|.+..+.+..|+.|...|++-.+
T Consensus 38 ~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~~ 72 (335)
T 2r3s_A 38 GIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTKQ 72 (335)
T ss_dssp SEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeEec
Confidence 78999999999999999999999999999999653
No 324
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=34.26 E-value=1.1e+02 Score=23.90 Aligned_cols=31 Identities=6% Similarity=0.140 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCC
Q 025599 42 FRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDP 78 (250)
Q Consensus 42 F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDP 78 (250)
++. ...|-.++.+.|..+ .|+.++.++|++|
T Consensus 35 l~~-F~~~D~d~~G~i~~~-----el~~~l~~lg~~~ 65 (198)
T 1juo_A 35 LYG-YFAAVAGQDGQIDAD-----ELQRCLTQSGIAG 65 (198)
T ss_dssp THH-HHHHHHTTTTEECHH-----HHHHHHHHHTTTC
T ss_pred HHH-HHHHhCCCCCcCCHH-----HHHHHHHHhcccC
Confidence 444 455667777777654 5778888888864
No 325
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=34.11 E-value=8 Score=29.72 Aligned_cols=32 Identities=9% Similarity=0.145 Sum_probs=28.6
Q ss_pred cHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 193 TVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 193 t~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
|..+|++.+|-+..-++.+|..|..+|++=.-
T Consensus 37 s~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 68 (126)
T 3ic7_A 37 SVREYASIVEVNANTVMRSYEYLQSQEVIYNK 68 (126)
T ss_dssp CTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE
Confidence 89999999999999999999999999987554
No 326
>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A
Probab=33.84 E-value=17 Score=33.45 Aligned_cols=86 Identities=10% Similarity=0.113 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHhhccccCCCeEEEEECCEEE--EEecCCccchhHHHHHHHHHhCC---CccHHHHHHhcCCChHHHHHH
Q 025599 137 AVSEDDCLRAISKLKVLGNGYEVISVGKKKL--VRSVPTELNKDHNQILELAQAQG---FVTVDEVERRLSWTSGRAIDA 211 (250)
Q Consensus 137 ~IS~~DI~rAik~L~~LG~g~~vi~ig~~~~--v~svp~El~~D~~~vLela~~~g---~vt~~~L~~~l~W~~~Ra~~~ 211 (250)
.-|++++.+.++.+.. .||+.+++-|..- +...+..+..|-..|-.+-+..| -+.++ .|-+|+...|...
T Consensus 123 ~~~~e~~~~~a~~~~~--~G~~~iKl~G~~~~~~~~~~~~~~~d~e~v~avR~avG~d~~L~vD---aN~~~~~~~A~~~ 197 (405)
T 3rr1_A 123 GDRPADVIAGMKALQA--GGFDHFKLNGCEEMGIIDTSRAVDAAVARVAEIRSAFGNTVEFGLD---FHGRVSAPMAKVL 197 (405)
T ss_dssp CSSHHHHHHHHHHHHH--TTCCEEEEESCCSSSCBCSHHHHHHHHHHHHHHHHTTGGGSEEEEE---CCSCBCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--cCCCEEEEecCCcccccccchhHHHHHHHHHHHHHHhCCCceEEEE---CCCCCCHHHHHHH
Confidence 3578998888877644 4788888722100 00000123333333322222222 23332 4789999999999
Q ss_pred HHHHHHcCCceeecCC
Q 025599 212 LDILLEEGLAMVDDGH 227 (250)
Q Consensus 212 L~~l~~~Gl~WvD~q~ 227 (250)
+..|..-|+.|+.+-.
T Consensus 198 ~~~L~~~~i~~iEeP~ 213 (405)
T 3rr1_A 198 IKELEPYRPLFIEEPV 213 (405)
T ss_dssp HHHHGGGCCSCEECSS
T ss_pred HHHHHhcCCCEEECCC
Confidence 9999999999998654
No 327
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=33.71 E-value=63 Score=27.76 Aligned_cols=35 Identities=11% Similarity=0.128 Sum_probs=33.3
Q ss_pred CCccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 190 GFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 190 g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
|.+|+++|++.+|.+..+.+..|..|...|++-.+
T Consensus 40 ~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~~~ 74 (334)
T 2ip2_A 40 GIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGD 74 (334)
T ss_dssp TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCceEec
Confidence 78999999999999999999999999999999876
No 328
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=33.63 E-value=56 Score=28.59 Aligned_cols=35 Identities=11% Similarity=0.045 Sum_probs=33.3
Q ss_pred CCccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 190 GFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 190 g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
|.+|+++|++.+|.+..+.+..|..|...|++-.+
T Consensus 63 ~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~ 97 (359)
T 1x19_A 63 GPKDLATLAADTGSVPPRLEMLLETLRQMRVINLE 97 (359)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeEee
Confidence 78999999999999999999999999999999876
No 329
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=33.56 E-value=83 Score=26.54 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=36.7
Q ss_pred cchhHHHHHHHHHhCCCccHHHHHH----hcC--CChHHHHHHHHHHHHcCCceee
Q 025599 175 LNKDHNQILELAQAQGFVTVDEVER----RLS--WTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 175 l~~D~~~vLela~~~g~vt~~~L~~----~l~--W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
++..+..+|..+.. |. +.++|.+ ..| .+...+...|+.|++.|++-.+
T Consensus 288 l~~~~~~~l~~la~-g~-~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~ 341 (357)
T 2fna_A 288 ARKRYLNIMRTLSK-CG-KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKE 341 (357)
T ss_dssp GHHHHHHHHHHHTT-CB-CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEES
T ss_pred ccHHHHHHHHHHHc-CC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEec
Confidence 45556667776665 66 8888874 456 7888899999999999998664
No 330
>2f3o_A PFLD, PFL2, pyruvate formate-lyase 2; glycerol dehydratase, glycyl R hyperthermophilic, unknown function; HET: PGE; 2.90A {Archaeoglobus fulgidus}
Probab=33.38 E-value=1.5e+02 Score=30.02 Aligned_cols=104 Identities=9% Similarity=0.190 Sum_probs=62.2
Q ss_pred HHHHhcccccccChhHHHHHHHHHHHcCCCCCCCCCcccccccccccchhhhHHHHHHHhhhhcccCCCceeHH---HHH
Q 025599 48 DFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQ---ELC 124 (250)
Q Consensus 48 ~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~nGGli~l~---el~ 124 (250)
..|.+....+ ||.-+...++|....+-+|.-.-++||- ++- .=|+..|+++ .+.||.-|++- .++
T Consensus 215 ~la~e~A~~e--d~~rk~EL~~ia~~~~~v~~~pa~tf~E-AlQ-~~~f~~l~~~--------~E~ng~~~s~GR~Dq~L 282 (776)
T 2f3o_A 215 KLAEELAESE--DGERREELLKIAEICRKVPAEKPETFWE-AVQ-FVWLVQSALH--------QENYEQAISMGRIDQYL 282 (776)
T ss_dssp HHHHHHHTTC--CTHHHHHHHHHHHHHHHTTTSCCCSHHH-HHH-HHHHHHHHHH--------HHSCSSCEECCSHHHHS
T ss_pred HHHHHHHhcc--CHHHHHHHHHHHHHhCcCccCCCCCHHH-HHH-HHHHHHHHHh--------hcCCCCcccCccHHHHH
Confidence 3344434343 8999999999999999999887777774 331 2233444433 23578667663 333
Q ss_pred HH-HHhhcCCCCCCCCHHHHHHHHhhccc-----------------cC-CCeEEEEECCE
Q 025599 125 NL-LRQRRKSNREAVSEDDCLRAISKLKV-----------------LG-NGYEVISVGKK 165 (250)
Q Consensus 125 ~~-v~k~R~~~~~~IS~~DI~rAik~L~~-----------------LG-~g~~vi~ig~~ 165 (250)
-- +.|- .....+|+++...-++.+=. -| ..|.-+.|||.
T Consensus 283 ~Pyy~~D--l~~G~lt~eeA~Eli~~f~ikl~~~~~~r~~~~~~~~~G~~~~~~~~iGG~ 340 (776)
T 2f3o_A 283 YPFFKKD--IGEGRINRELAFDILANLWIKTNEIVPAFDSLLEQYFSGQATNQAVTIGGC 340 (776)
T ss_dssp HHHHHHH--TTTTSSCHHHHHHHHHHHHHHTTSBCCCCCTTHHHHSTTTCCCCEEEEECB
T ss_pred HHHHHhH--HhcCCCCHHHHHHHHHHHHHHhhcccccCChhhhhccCCCCcccEEEECCc
Confidence 22 3332 11346888887777665421 11 34677888875
No 331
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=33.36 E-value=29 Score=29.73 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=38.5
Q ss_pred HHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCcee
Q 025599 179 HNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMV 223 (250)
Q Consensus 179 ~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~Wv 223 (250)
...||.+... |..|+.+|++.+|.+..-....|..|++.|++..
T Consensus 14 R~~IL~~L~~-g~~s~~ELa~~lglS~stVs~hL~~Le~aGLV~~ 57 (232)
T 2qlz_A 14 RRDLLSHLTC-MECYFSLLSSKVSVSSTAVAKHLKIMEREGVLQS 57 (232)
T ss_dssp HHHHHHHHTT-TTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 3446766654 7799999999999999999999999999999987
No 332
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=33.26 E-value=59 Score=23.85 Aligned_cols=47 Identities=17% Similarity=0.276 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccC---hhHHHHHHHHHHHcCCCC
Q 025599 32 TDLMKEQLATFRSQLEDFARKHKNDIRKN---PTFRSQFHEMCAKVGVDP 78 (250)
Q Consensus 32 ~~~l~~qL~~F~~~L~~Fa~~h~~eI~~d---p~fR~~F~~mC~siGVDP 78 (250)
+++|...++.|+.-+++--.+...+.... .+=..+|++|...-||||
T Consensus 26 le~Lee~leKl~~VveERree~~~~~~~~~er~~Kl~~~~e~l~~~GI~~ 75 (86)
T 3nr7_A 26 LETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDP 75 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 56666667777655554433332222222 233467899999999998
No 333
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=33.15 E-value=71 Score=22.30 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=32.9
Q ss_pred HHHHHHhhhhcccCCCc-eeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhcccc
Q 025599 101 VQIVEICLATRPHNGGL-INLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVL 153 (250)
Q Consensus 101 vqIvevC~~tr~~nGGl-i~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~L 153 (250)
..|++......+.+|=+ .++.++...++ +++++|.++++.+..|
T Consensus 31 ~~Ia~~iI~~LD~~GYL~~~l~eia~~l~---------~~~~eve~vL~~lQ~~ 75 (76)
T 2k9l_A 31 QELALELLNYLNEKGFLSKSVEEISDVLR---------CSVEELEKVRQKVLRL 75 (76)
T ss_dssp HHHHHHHHHHCTTSSTTCCCHHHHHHHHT---------SCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHcC---------CCHHHHHHHHHHHhcC
Confidence 34666666677778665 56888877662 8999999999998765
No 334
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=33.07 E-value=78 Score=27.59 Aligned_cols=36 Identities=14% Similarity=0.007 Sum_probs=33.5
Q ss_pred CCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 189 QGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 189 ~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
.|.+|+++|++.+|.+.......|..|...|++-.+
T Consensus 47 ~~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~~~ 82 (374)
T 1qzz_A 47 AGADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGG 82 (374)
T ss_dssp TTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECC
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCEEEe
Confidence 478999999999999999999999999999999875
No 335
>1r42_A Angiotensin I converting enzyme 2; zinc metallopeptidase domain, Na open conformation, chloride ION binding site; HET: NAG; 2.20A {Homo sapiens} SCOP: d.92.1.5 PDB: 1r4l_A* 3sci_A 3scj_A 2ajf_A* 3kbh_A* 3d0g_A* 3d0h_A* 3d0i_A* 3sck_A 3scl_A
Probab=32.79 E-value=67 Score=31.05 Aligned_cols=63 Identities=14% Similarity=0.138 Sum_probs=44.0
Q ss_pred HHHHHHHcCCC-CCCCCCcccccccccccch--hhhHHHHHHHhhhhcccCCCceeHHHHHHHHHhhcCCCCCCCCHHHH
Q 025599 67 FHEMCAKVGVD-PLASNKGFWAELLGIGDFY--YELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDC 143 (250)
Q Consensus 67 F~~mC~siGVD-PL~s~k~~ws~~lG~gdfy--~eLavqIvevC~~tr~~nGGli~l~el~~~v~k~R~~~~~~IS~~DI 143 (250)
|+.||..+|++ ||. -+||| -+++..+-.||.. ||..+..||+..+.-. ..++++-+
T Consensus 526 ~~~~~~~~~~~~~l~-----------~~d~~~~~~~~~~l~~i~~~-----G~s~~~~ell~~~tG~-----~~~~~~~l 584 (615)
T 1r42_A 526 QEALCQAAKHEGPLH-----------KCDISNSTEAGQKLFNMLRL-----GKSEPWTLALENVVGA-----KNMNVRPL 584 (615)
T ss_dssp HHHHHHTTTCCSCGG-----------GCCCTTCHHHHHHHHHHHTT-----TTSSCHHHHHHHHHSS-----SSCCSHHH
T ss_pred HHHHHHhccccCCcc-----------cccccCCHHHHHHHHHHHhC-----cCCCCHHHHHHHhcCC-----CCCChHHH
Confidence 56777777776 544 26887 7777777777765 8899999998877632 45777766
Q ss_pred HHHHhhc
Q 025599 144 LRAISKL 150 (250)
Q Consensus 144 ~rAik~L 150 (250)
++=++-|
T Consensus 585 ~~y~~pl 591 (615)
T 1r42_A 585 LNYFEPL 591 (615)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555443
No 336
>4fmr_A Uncharacterized hypothetical protein; bacterial DNA binding protein, DUF4469 with IG-like fold, ST genomics; HET: MSE; 2.25A {Bacteroides vulgatus}
Probab=32.75 E-value=69 Score=28.16 Aligned_cols=53 Identities=15% Similarity=0.200 Sum_probs=39.8
Q ss_pred cCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhcc-----ccCCCeEEEEEC-CEEEEEe
Q 025599 113 HNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLK-----VLGNGYEVISVG-KKKLVRS 170 (250)
Q Consensus 113 ~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~-----~LG~g~~vi~ig-~~~~v~s 170 (250)
..-|-+++++++.++.+.+. .+++.||..+++.|. -|-.|+.| .+| .+..+++
T Consensus 28 ~~~gs~t~~dIa~~ia~~~S----~ls~~di~~vl~~l~~~~~e~L~~G~sV-n~G~~~~s~~~ 86 (265)
T 4fmr_A 28 ETTRSIDKEIILDRMVAKNP----GVRRETMALGIELMEEVVAEALMNGESV-NTGLFRGVAQF 86 (265)
T ss_dssp CCCCEECHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHHHHHHTTTCEE-ECSSEEEEEEE
T ss_pred EEecccCHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHhCCCEE-EcCCEEEEEEE
Confidence 45679999999999987643 589999999999886 37788877 355 3333333
No 337
>4fxe_A Antitoxin RELB; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, toxin-toxin inhibitor compl; 2.75A {Escherichia coli} PDB: 2k29_A 2kc8_B
Probab=32.70 E-value=22 Score=25.60 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=21.0
Q ss_pred cccChhHHHHHHHHHHHcCCCCC
Q 025599 57 IRKNPTFRSQFHEMCAKVGVDPL 79 (250)
Q Consensus 57 I~~dp~fR~~F~~mC~siGVDPL 79 (250)
||=|++...++.+.|..+|++|-
T Consensus 6 ~RiD~~lK~~a~~v~~~lGl~~s 28 (79)
T 4fxe_A 6 LRIDDELKARSYAALEKMGVTPS 28 (79)
T ss_dssp EECCHHHHHHHHHHHHHHTCCHH
T ss_pred EEcCHHHHHHHHHHHHHhCCCHH
Confidence 67799999999999999999974
No 338
>3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A*
Probab=32.46 E-value=23 Score=32.33 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=50.8
Q ss_pred CCHHHHHHHHhhccccCCCeEEEEEC-CEEEEEecCCccchhHHHHHHHHHhCC---CccHHHHHHhcCCChHHHHHHHH
Q 025599 138 VSEDDCLRAISKLKVLGNGYEVISVG-KKKLVRSVPTELNKDHNQILELAQAQG---FVTVDEVERRLSWTSGRAIDALD 213 (250)
Q Consensus 138 IS~~DI~rAik~L~~LG~g~~vi~ig-~~~~v~svp~El~~D~~~vLela~~~g---~vt~~~L~~~l~W~~~Ra~~~L~ 213 (250)
-|++++.+.++.+..- .||+.+++. |. ..+..|-..|-.+-+..| -+.++ .|-+|+...|...+.
T Consensus 166 ~~~e~~~~~a~~~~~~-~G~~~~KlKvG~-------~~~~~d~~~v~avR~a~G~~~~l~vD---aN~~~~~~~A~~~~~ 234 (383)
T 3toy_A 166 LDARDDERTLRTACDE-HGFRAIKSKGGH-------GDLATDEAMIKGLRALLGPDIALMLD---FNQSLDPAEATRRIA 234 (383)
T ss_dssp CCHHHHHHHHHHHHHT-SCCCEEEEECCS-------SCHHHHHHHHHHHHHHHCTTSEEEEE---CTTCSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc-cCCcEEEEecCC-------CCHHHHHHHHHHHHHHhCCCCeEEEe---CCCCCCHHHHHHHHH
Confidence 4778777776665332 168888874 31 134445444433333222 23222 478999999999999
Q ss_pred HHHHcCCceeecCC
Q 025599 214 ILLEEGLAMVDDGH 227 (250)
Q Consensus 214 ~l~~~Gl~WvD~q~ 227 (250)
.|...|+.|+.+-.
T Consensus 235 ~l~~~~i~~iEeP~ 248 (383)
T 3toy_A 235 RLADYDLTWIEEPV 248 (383)
T ss_dssp HHGGGCCSEEECCS
T ss_pred HHHhhCCCEEECCC
Confidence 99999999998654
No 339
>3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A
Probab=32.40 E-value=16 Score=32.99 Aligned_cols=76 Identities=21% Similarity=0.354 Sum_probs=49.9
Q ss_pred CHHHHHHHHhhccccCCCeEEEEEC-CEEEEEecCCccchhHHHHHHHHHhCC---CccHHHHHHhcCCChHHHHHHHHH
Q 025599 139 SEDDCLRAISKLKVLGNGYEVISVG-KKKLVRSVPTELNKDHNQILELAQAQG---FVTVDEVERRLSWTSGRAIDALDI 214 (250)
Q Consensus 139 S~~DI~rAik~L~~LG~g~~vi~ig-~~~~v~svp~El~~D~~~vLela~~~g---~vt~~~L~~~l~W~~~Ra~~~L~~ 214 (250)
+++++.+.++.+. ..||+.+++. |. ....|-..+-.+-+..| -+.++ .|-+|+...|...+..
T Consensus 140 ~~e~~~~~a~~~~--~~G~~~~K~KvG~--------~~~~d~~~v~avR~~~g~~~~l~vD---aN~~~~~~~A~~~~~~ 206 (368)
T 3q45_A 140 EPHKMAADAVQIK--KNGFEIIKVKVGG--------SKELDVERIRMIREAAGDSITLRID---ANQGWSVETAIETLTL 206 (368)
T ss_dssp CHHHHHHHHHHHH--HTTCSEEEEECCS--------CHHHHHHHHHHHHHHHCSSSEEEEE---CTTCBCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--HcCCCeEEEEecC--------CHHHHHHHHHHHHHHhCCCCeEEEE---CCCCCChHHHHHHHHH
Confidence 6788777766653 3579988874 32 22334333333333222 23333 4789999999999999
Q ss_pred HHHcCCceeecCC
Q 025599 215 LLEEGLAMVDDGH 227 (250)
Q Consensus 215 l~~~Gl~WvD~q~ 227 (250)
|...|+.|+.+-.
T Consensus 207 l~~~~i~~iEqP~ 219 (368)
T 3q45_A 207 LEPYNIQHCEEPV 219 (368)
T ss_dssp HGGGCCSCEECCB
T ss_pred HhhcCCCEEECCC
Confidence 9999999998644
No 340
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=32.28 E-value=92 Score=19.36 Aligned_cols=49 Identities=22% Similarity=0.186 Sum_probs=30.7
Q ss_pred EEEECCEEEEEecCCccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHH
Q 025599 159 VISVGKKKLVRSVPTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDAL 212 (250)
Q Consensus 159 vi~ig~~~~v~svp~El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L 212 (250)
.++++|+.+. ++ .+..+...++.+. ..| .|..++++.+|.+..-....+
T Consensus 4 ~~~~~g~~~~--l~-~~~~~~~~i~~l~-~~g-~s~~eIA~~lgis~~TV~~~l 52 (55)
T 2x48_A 4 EIQVQGVRYY--VE-SEDDLVSVAHELA-KMG-YTVQQIANALGVSERKVRRYL 52 (55)
T ss_dssp EEEETTEEEE--EC-SHHHHHHHHHHHH-HTT-CCHHHHHHHHTSCHHHHHHHH
T ss_pred HHhhccHHHH--Hh-cCHHHHHHHHHHH-HcC-CCHHHHHHHHCcCHHHHHHHH
Confidence 5677888652 11 1223344455553 445 499999999999887666544
No 341
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=32.23 E-value=1.9e+02 Score=24.33 Aligned_cols=148 Identities=17% Similarity=0.115 Sum_probs=77.2
Q ss_pred cccChhHHHHHHHHHHHcCCCCCCCCCcccccccccccchhhhHHHHHHHhhhhcccCCCceeHHHHHHHHHhhcCC--C
Q 025599 57 IRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKS--N 134 (250)
Q Consensus 57 I~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~nGGli~l~el~~~v~k~R~~--~ 134 (250)
|-..+.++..|.+.+...+.++-. ..+ .++| +=|+.++.-..... ..-=+|+=---...+.+.-+. .
T Consensus 18 i~~~~~L~~~~~~i~~e~~~~~~I-------~vi-~~~l--e~av~~a~~~~~~~-~~dVIISRGgta~~Lr~~~~iPVV 86 (225)
T 2pju_A 18 TVSVTRLFELFRDISLEFDHLANI-------TPI-QLGF--EKAVTYIRKKLANE-RCDAIIAAGSNGAYLKSRLSVPVI 86 (225)
T ss_dssp EECCHHHHHHHHHHHTTTTTTCEE-------EEE-CCCH--HHHHHHHHHHTTTS-CCSEEEEEHHHHHHHHTTCSSCEE
T ss_pred EEchHHHHHHHHHHHHhhCCCceE-------EEe-cCcH--HHHHHHHHHHHhcC-CCeEEEeCChHHHHHHhhCCCCEE
Confidence 344566777777777755543111 000 0232 34566554433210 011244444344455543221 0
Q ss_pred CCCCCHHHHHHHHhhccccCCCeEEEEECCEE--------------EEEecCCccchh-HHHHHHHHHh-----CCCccH
Q 025599 135 REAVSEDDCLRAISKLKVLGNGYEVISVGKKK--------------LVRSVPTELNKD-HNQILELAQA-----QGFVTV 194 (250)
Q Consensus 135 ~~~IS~~DI~rAik~L~~LG~g~~vi~ig~~~--------------~v~svp~El~~D-~~~vLela~~-----~g~vt~ 194 (250)
.-.+|--||++|++..+..+.-+-++.+++.. -+.+.- -..| ...+.++.+. -|...+
T Consensus 87 ~I~vs~~Dil~aL~~a~~~~~kIavVg~~~~~~~~~~i~~ll~~~i~~~~~~--~~ee~~~~i~~l~~~G~~vVVG~~~~ 164 (225)
T 2pju_A 87 LIKPSGYDVLQFLAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYI--TEEDARGQINELKANGTEAVVGAGLI 164 (225)
T ss_dssp EECCCHHHHHHHHHHTTCTTSCEEEEEESSCCHHHHHHHHHHTCCEEEEEES--SHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred EecCCHHHHHHHHHHHHhhCCcEEEEeCchhhhHHHHHHHHhCCceEEEEeC--CHHHHHHHHHHHHHCCCCEEECCHHH
Confidence 13799999999999999998888888886521 001110 0111 2223333332 255667
Q ss_pred HHHHHhcCC------ChHHHHHHHHHHHH
Q 025599 195 DEVERRLSW------TSGRAIDALDILLE 217 (250)
Q Consensus 195 ~~L~~~l~W------~~~Ra~~~L~~l~~ 217 (250)
-.+++++|. +.+=.+.+|++.++
T Consensus 165 ~~~A~~~Gl~~vlI~s~eSI~~Ai~eA~~ 193 (225)
T 2pju_A 165 TDLAEEAGMTGIFIYSAATVRQAFSDALD 193 (225)
T ss_dssp HHHHHHTTSEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEECCHHHHHHHHHHHHH
Confidence 778888875 45556666665544
No 342
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=32.19 E-value=57 Score=25.89 Aligned_cols=34 Identities=15% Similarity=0.018 Sum_probs=31.0
Q ss_pred CccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 191 FVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 191 ~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
.+|.++|++-+|-++.-.-.+|..|.++|++=++
T Consensus 167 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 200 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLNDFKKMGILERV 200 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEES
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEEc
Confidence 5899999999999999999999999999987553
No 343
>4dm9_A Ubiquitin carboxyl-terminal hydrolase isozyme L1; ubiquitin hydrolase, ligase, hydrolase, ligase-inhibitor COM; HET: PHQ GME; 2.35A {Homo sapiens} PDB: 3kw5_A 2etl_A* 3irt_A 3kvf_A 3ifw_A 2len_A
Probab=31.48 E-value=22 Score=30.63 Aligned_cols=20 Identities=20% Similarity=0.521 Sum_probs=18.7
Q ss_pred ccccChhHHHHHHHHHHHcCCCC
Q 025599 56 DIRKNPTFRSQFHEMCAKVGVDP 78 (250)
Q Consensus 56 eI~~dp~fR~~F~~mC~siGVDP 78 (250)
.|-+||++ |.+++..+||.|
T Consensus 10 pLESnP~V---ft~l~~~LGv~~ 29 (228)
T 4dm9_A 10 PMEINPEM---LNKVLSRLGVAG 29 (228)
T ss_dssp CCCCSHHH---HHHHHHHTTBCS
T ss_pred eccCCHHH---HHHHHHHcCCCC
Confidence 57899999 999999999998
No 344
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=31.40 E-value=1.2e+02 Score=21.57 Aligned_cols=55 Identities=11% Similarity=0.179 Sum_probs=44.7
Q ss_pred ccchh-HHHHHHHHHhCCCccHHHHHHhcCCChHH-HHHHHHHHHHcCCceeecCCC
Q 025599 174 ELNKD-HNQILELAQAQGFVTVDEVERRLSWTSGR-AIDALDILLEEGLAMVDDGHR 228 (250)
Q Consensus 174 El~~D-~~~vLela~~~g~vt~~~L~~~l~W~~~R-a~~~L~~l~~~Gl~WvD~q~~ 228 (250)
+|+.- +..|+.+.+..|--++-.+++++|-.... .--.|-.|.+.|++=.|+..+
T Consensus 6 qls~~~ee~I~~fL~~~Gp~~AL~IAK~LGlktAK~VNp~LY~m~~~~lL~~Dek~~ 62 (72)
T 3eyi_A 6 QFSQQREEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMDEQSK 62 (72)
T ss_dssp CCSSHHHHHHHHHHHHHCSEEHHHHHHHTTCCSGGGTHHHHHHHHHTTSEEECTTTC
T ss_pred hhhhhhHHHHHHHHHHcCCchHHHHHHHhCcchhhhcCHHHHHHHHccCcCCCCCCC
Confidence 55554 56699999988999999999999998755 556788999999996676653
No 345
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A
Probab=31.36 E-value=1.3e+02 Score=21.95 Aligned_cols=42 Identities=19% Similarity=0.093 Sum_probs=29.8
Q ss_pred CceeHHHHHHHHHhhcCC-CCCCCCHHHHHHHHhhccccCCCe
Q 025599 116 GLINLQELCNLLRQRRKS-NREAVSEDDCLRAISKLKVLGNGY 157 (250)
Q Consensus 116 Gli~l~el~~~v~k~R~~-~~~~IS~~DI~rAik~L~~LG~g~ 157 (250)
|.|+..||...+.+.-+. ....+|+++|..-++.+-.=|.|.
T Consensus 27 G~Is~~EL~~~l~~~l~~~lg~~~~~~ev~~~i~~~D~dgDG~ 69 (101)
T 3nso_A 27 YKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCE 69 (101)
T ss_dssp TEECHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHHHHCCCSC
T ss_pred CEECHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhCCCCCCC
Confidence 899999998888762221 125688888888888877666553
No 346
>3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A*
Probab=31.25 E-value=25 Score=32.04 Aligned_cols=77 Identities=10% Similarity=0.196 Sum_probs=51.7
Q ss_pred CCHHHHHHHHhhccccCCCeEEEEEC-CEEEEEecCCccchhHHHHHHHHHhCCC---ccHHHHHHhcCCChHHHHHHHH
Q 025599 138 VSEDDCLRAISKLKVLGNGYEVISVG-KKKLVRSVPTELNKDHNQILELAQAQGF---VTVDEVERRLSWTSGRAIDALD 213 (250)
Q Consensus 138 IS~~DI~rAik~L~~LG~g~~vi~ig-~~~~v~svp~El~~D~~~vLela~~~g~---vt~~~L~~~l~W~~~Ra~~~L~ 213 (250)
-+++++.+.++.... .||..+++. |. .+..|-..|-.+-+..|. +.++ .|-+|+...|...+.
T Consensus 141 ~~~e~~~~~a~~~~~--~Gf~~~KlK~g~--------~~~~d~~~v~avR~a~g~~~~L~vD---aN~~w~~~~A~~~~~ 207 (379)
T 3r0u_A 141 GNVAETIQNIQNGVE--ANFTAIKVKTGA--------DFNRDIQLLKALDNEFSKNIKFRFD---ANQGWNLAQTKQFIE 207 (379)
T ss_dssp CCHHHHHHHHHHHHH--TTCCEEEEECSS--------CHHHHHHHHHHHHHHCCTTSEEEEE---CTTCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--cCCCEEeeecCC--------CHHHHHHHHHHHHHhcCCCCeEEEe---CCCCcCHHHHHHHHH
Confidence 467777776666543 479998874 32 334454444444444442 3333 578999999999999
Q ss_pred HHHH--cCCceeecCC
Q 025599 214 ILLE--EGLAMVDDGH 227 (250)
Q Consensus 214 ~l~~--~Gl~WvD~q~ 227 (250)
.|.. -|+.|+.+-.
T Consensus 208 ~l~~~~~~l~~iEeP~ 223 (379)
T 3r0u_A 208 EINKYSLNVEIIEQPV 223 (379)
T ss_dssp HHHTSCCCEEEEECCS
T ss_pred HHhhcCCCcEEEECCC
Confidence 9988 7999998654
No 347
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=31.22 E-value=1.2e+02 Score=20.32 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=21.6
Q ss_pred cCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccc
Q 025599 113 HNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKV 152 (250)
Q Consensus 113 ~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~ 152 (250)
.+.|.|+..|+...+... | ..+|++++...++.+.+
T Consensus 32 d~~G~i~~~el~~~l~~~-g---~~~~~~~~~~l~~~~D~ 67 (90)
T 1avs_A 32 DGGGDISTKELGTVMRML-G---QNPTKEELDAIIEEVDE 67 (90)
T ss_dssp TCSSEECHHHHHHHHHHT-T---CCCCHHHHHHHHHHHCT
T ss_pred CCCCcCcHHHHHHHHHHh-C---CCCCHHHHHHHHHHhCC
Confidence 344777777777666553 2 34666666666555544
No 348
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=31.19 E-value=74 Score=27.64 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=33.7
Q ss_pred CCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 189 QGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 189 ~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
.|.+|+++|++.+|.+.......|..|...|++-.+
T Consensus 50 ~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~~~ 85 (360)
T 1tw3_A 50 AGARTVKALAARTDTRPEALLRLIRHLVAIGLLEED 85 (360)
T ss_dssp TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEec
Confidence 478999999999999999999999999999999876
No 349
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=30.87 E-value=60 Score=26.45 Aligned_cols=35 Identities=9% Similarity=-0.038 Sum_probs=31.9
Q ss_pred CccHHHHHHhcCCChHHHHHHHHHHHHcCCceeec
Q 025599 191 FVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 191 ~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
.+|..+|++-+|-++.-.-.+|..|.++|++=++.
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~~ 211 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKRENILDKKK 211 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECS
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeCC
Confidence 47999999999999999999999999999986653
No 350
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5
Probab=30.80 E-value=1.7e+02 Score=22.09 Aligned_cols=29 Identities=10% Similarity=0.155 Sum_probs=18.0
Q ss_pred HHHHHHHh-cccccccChhHHHHHHHHHHHcCCCC
Q 025599 45 QLEDFARK-HKNDIRKNPTFRSQFHEMCAKVGVDP 78 (250)
Q Consensus 45 ~L~~Fa~~-h~~eI~~dp~fR~~F~~mC~siGVDP 78 (250)
....|-.. +.+.|.. .+|..++..+|..|
T Consensus 30 ~f~~fd~~~~~G~i~~-----~e~~~~l~~~~~~~ 59 (193)
T 1bjf_A 30 WYKGFLRDCPSGHLSM-----EEFKKIYGNFFPYG 59 (193)
T ss_dssp HHHHHHHHSTTSEEEH-----HHHHHHHTTTSSSS
T ss_pred HHHHHHHHCCCCCcCH-----HHHHHHHHHhcCcC
Confidence 34445555 5666653 36778888887654
No 351
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=30.78 E-value=1e+02 Score=19.34 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=27.7
Q ss_pred cCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCC
Q 025599 113 HNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNG 156 (250)
Q Consensus 113 ~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~g 156 (250)
.+.|.|+..|+...+... ...++++++...++.+.+=+.|
T Consensus 18 d~~G~i~~~el~~~l~~~----~~~~~~~~~~~~~~~~d~~~~g 57 (71)
T 2b1u_A 18 DGDGHITVDELRRAMAGL----GQPLPQEELDAMIREADVDQDG 57 (71)
T ss_dssp SSSSEEEHHHHHHHGGGT----TCSSCHHHHHHHHHHCCSSSSS
T ss_pred CCCCcCcHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCCCCC
Confidence 445889999988777653 2457888888777776554444
No 352
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=30.46 E-value=86 Score=26.43 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=34.1
Q ss_pred CCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeec
Q 025599 189 QGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 189 ~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
.+.|+..+|++.+|.++.-+.+.|+.|.+.|++-++.
T Consensus 28 ~~~V~~~~LA~~LgvS~~SV~~~lkkL~e~GLV~~~~ 64 (200)
T 2p8t_A 28 KEPLGRKQISERLELGEGSVRTLLRKLSHLDIIRSKQ 64 (200)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-
T ss_pred cCCccHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 4679999999999999999999999999999999886
No 353
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural genomics, PSI-B protein structure initiative, NEW YORK structural genomics consortium; 1.54A {Homo sapiens} PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Probab=30.31 E-value=1e+02 Score=21.85 Aligned_cols=41 Identities=22% Similarity=0.156 Sum_probs=23.2
Q ss_pred CceeHHHHHHHHHhhcCC-CCCCCCHHHHHHHHhhccccCCC
Q 025599 116 GLINLQELCNLLRQRRKS-NREAVSEDDCLRAISKLKVLGNG 156 (250)
Q Consensus 116 Gli~l~el~~~v~k~R~~-~~~~IS~~DI~rAik~L~~LG~g 156 (250)
|.|+..||...+.+.-|. ....+|+++|.+-++.+-.=|.|
T Consensus 27 G~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~d~DG 68 (93)
T 4eto_A 27 FKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDN 68 (93)
T ss_dssp TSBCHHHHHHHHHHHCGGGC---CCHHHHHHHHHHHCTTSSS
T ss_pred CeECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHCCCCCC
Confidence 788888887777652221 11345777777766666554444
No 354
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=30.12 E-value=1.6e+02 Score=21.32 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=41.6
Q ss_pred HHHHHHHHHh-CCCccHHHHHHhcCC-ChHHHHHHHHHHHHcCCceeecCCCCCCccee
Q 025599 179 HNQILELAQA-QGFVTVDEVERRLSW-TSGRAIDALDILLEEGLAMVDDGHRDRKRRYW 235 (250)
Q Consensus 179 ~~~vLela~~-~g~vt~~~L~~~l~W-~~~Ra~~~L~~l~~~Gl~WvD~q~~~~e~~Yw 235 (250)
...||++|+. --.||-++|...+.= +..---.+|+.|+..|.+=+=.+. ..+||
T Consensus 16 e~~IL~l~~~~P~GItd~~L~~~~p~~~~~~r~~aIN~LL~~gkiel~K~~---~~liY 71 (81)
T 2dk8_A 16 ENRIIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSN---TGLLY 71 (81)
T ss_dssp HHHHHHHHHHCSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHHTSEEEEECS---SSEEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHcCCeEEEecC---CeEEE
Confidence 5679999995 346899999988864 888888899999999987665443 45555
No 355
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}
Probab=30.04 E-value=1.3e+02 Score=22.77 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=20.0
Q ss_pred HHHHHHHHHHH-HHhcccccccChhHHHHHHHHHHHcCCCCC
Q 025599 39 LATFRSQLEDF-ARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (250)
Q Consensus 39 L~~F~~~L~~F-a~~h~~eI~~dp~fR~~F~~mC~siGVDPL 79 (250)
...++.....| =.++.+.|..+ +|+.-++.++...|..|-
T Consensus 11 ~~~l~~~F~~~~D~d~dG~i~~~-E~~~~l~~~~~~~g~~~~ 51 (191)
T 2ccm_A 11 RNKILRVFNTFYDCNHDGVIEWD-DFELAIKKICNLHSWPTD 51 (191)
T ss_dssp HHHHHHHHHHHTCTTCSSEECHH-HHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHhccccccCCCCCeeeHH-HHHHHHHHHHHHhCCCCC
Confidence 34455555566 45666666643 333333333333387653
No 356
>3nw0_B Melanoma-associated antigen G1; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=29.91 E-value=2.5e+02 Score=23.67 Aligned_cols=127 Identities=13% Similarity=0.111 Sum_probs=79.6
Q ss_pred cchhhhHHHHHHHhhhhcccCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhcc-ccCCCeEEEEEC--CE-EEEE
Q 025599 94 DFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLK-VLGNGYEVISVG--KK-KLVR 169 (250)
Q Consensus 94 dfy~eLavqIvevC~~tr~~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~-~LG~g~~vi~ig--~~-~~v~ 169 (250)
|--.+.+..+|.+.+.. ..+.-.|+-+|+...|.+... ..-++=+.+|++.|+ ++| +++..++ ++ +++.
T Consensus 6 ~~l~~kv~~LVrflL~k-~~~k~pI~r~emlk~V~~~y~----~~F~~I~~~A~e~L~~vFG--~elkEvd~~~~~YiLv 78 (217)
T 3nw0_B 6 KQLELKVSELVQFLLIK-DQKKIPIKRADILKHVIGDYK----DIFPDLFKRAAERLQYVFG--YKLVELEPKSNTYILI 78 (217)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHTCCEEHHHHHHHTTGGGG----GGHHHHHHHHHHHHHHHHC--EEEEESSTTCSEEEEE
T ss_pred cHHHHHHHHHHHHHHHH-hhCCCCccHHHHHHHHhHHhh----HHHHHHHHHHHHHHHHHcC--eEEEEecCCCceEEEE
Confidence 33456677777777764 455789999999998887533 246667788998886 565 8999986 44 4445
Q ss_pred ec-C-C----ccchhH--------HHHHHHHH-hCCCccHHHHHHhc---CCChHH-------HHHHH-HHHHHcCCcee
Q 025599 170 SV-P-T----ELNKDH--------NQILELAQ-AQGFVTVDEVERRL---SWTSGR-------AIDAL-DILLEEGLAMV 223 (250)
Q Consensus 170 sv-p-~----El~~D~--------~~vLela~-~~g~vt~~~L~~~l---~W~~~R-------a~~~L-~~l~~~Gl~Wv 223 (250)
+. | . .++.++ +.||.++- .+++++.++|-+.| |....+ .+..| ++++++|.+=.
T Consensus 79 ~~L~pl~~~~~l~~~~~~pk~GLL~~IL~~Ifm~Gn~~~Ee~lw~~L~~lgv~~g~~h~i~Ge~rklit~~lV~e~YLey 158 (217)
T 3nw0_B 79 NTLEPVEEDAEMRGDQGTPTTGLLMIVLGLIFMKGNTLKETEAWDFLRRLGVYPTKKHLIFGDPKKLITEDFVRQRYLEY 158 (217)
T ss_dssp ECSCCCC----CCC-CCCHHHHHHHHHHHHHHHTTTCBCHHHHHHHHHHC-CCC----------HHHHHHHHHHHTCEEC
T ss_pred ECCCccccCCccCCcccccchhHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCCcCCcCCCHHHHHHHHHHHcCCeEE
Confidence 43 3 1 344443 12455544 57899999988644 443211 34555 79999999966
Q ss_pred ecCCC
Q 025599 224 DDGHR 228 (250)
Q Consensus 224 D~q~~ 228 (250)
. |.|
T Consensus 159 ~-qvp 162 (217)
T 3nw0_B 159 R-RIP 162 (217)
T ss_dssp C----
T ss_pred E-eec
Confidence 4 443
No 357
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=29.83 E-value=60 Score=23.27 Aligned_cols=72 Identities=18% Similarity=0.256 Sum_probs=49.4
Q ss_pred ccchhhhHHHHHHHhhhhcccCCCce-eHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEE-CCEEEEEe
Q 025599 93 GDFYYELGVQIVEICLATRPHNGGLI-NLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISV-GKKKLVRS 170 (250)
Q Consensus 93 gdfy~eLavqIvevC~~tr~~nGGli-~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~g~~vi~i-g~~~~v~s 170 (250)
...|-.++-.|..-.....-..|..+ +..+|...++ ||..=|.+|++.|+..| + |... |.-++|..
T Consensus 10 ~~~~~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~---------vSr~tvr~al~~L~~~G--l-i~~~~g~G~~v~~ 77 (102)
T 1v4r_A 10 GKGYADVATHFRTLIKSGELAPGDTLPSVADIRAQFG---------VAAKTVSRALAVLKSEG--L-VSSRGALGTVVEK 77 (102)
T ss_dssp SCCHHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSS---------SCTTHHHHHTTTTTTSS--C-CEEETTTEEESCS
T ss_pred CCHHHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHC---------cCHHHHHHHHHHHHHCC--C-EEEeCCCeEEEcc
Confidence 35677777777776666555667777 8889877643 78999999999999866 4 2333 44556655
Q ss_pred cCCccc
Q 025599 171 VPTELN 176 (250)
Q Consensus 171 vp~El~ 176 (250)
.+.+.+
T Consensus 78 ~~~~~~ 83 (102)
T 1v4r_A 78 NPIVIT 83 (102)
T ss_dssp CCCCCS
T ss_pred CCcccc
Confidence 554443
No 358
>1xd3_A Ubiquitin carboxyl-terminal esterase L3; enzyme-ligand complex, active site crossover loop, hydrolase; HET: GVE; 1.45A {Homo sapiens} SCOP: d.3.1.6 PDB: 1uch_A*
Probab=29.73 E-value=25 Score=30.30 Aligned_cols=20 Identities=20% Similarity=0.561 Sum_probs=18.7
Q ss_pred ccccChhHHHHHHHHHHHcCCCC
Q 025599 56 DIRKNPTFRSQFHEMCAKVGVDP 78 (250)
Q Consensus 56 eI~~dp~fR~~F~~mC~siGVDP 78 (250)
.|-+||++ |.+|+..+||.|
T Consensus 8 plESnP~V---ft~l~~~lGv~~ 27 (230)
T 1xd3_A 8 PLEANPEV---TNQFLKQLGLHP 27 (230)
T ss_dssp CCBCCHHH---HHHHHHHTTBCT
T ss_pred cccCCHHH---HHHHHHHcCCCc
Confidence 58899999 999999999998
No 359
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=29.68 E-value=24 Score=26.61 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=22.8
Q ss_pred cccccChhHHHHHHHHHHHcCCCCCC
Q 025599 55 NDIRKNPTFRSQFHEMCAKVGVDPLA 80 (250)
Q Consensus 55 ~eI~~dp~fR~~F~~mC~siGVDPL~ 80 (250)
=.|+....|+.=|..||...||+|=+
T Consensus 35 FkIK~tt~l~KL~~aYc~r~gv~~~s 60 (95)
T 2l76_A 35 LPLRMSEPLQSVVDHMATHLGVSPSR 60 (95)
T ss_dssp EEECSSSCTHHHHHHHHHHHTSCGGG
T ss_pred EEEecCChHHHHHHHHHhhcCCChhh
Confidence 36888889999999999999999854
No 360
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=29.51 E-value=2.4e+02 Score=23.90 Aligned_cols=71 Identities=18% Similarity=0.167 Sum_probs=50.1
Q ss_pred CCCCHHHHHHHHhhccccCCCeEEEEECCEEEEEecCCccchh-HHHHHHHHH-hCCCccHHHHHHhcCCChHHHHHHHH
Q 025599 136 EAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKD-HNQILELAQ-AQGFVTVDEVERRLSWTSGRAIDALD 213 (250)
Q Consensus 136 ~~IS~~DI~rAik~L~~LG~g~~vi~ig~~~~v~svp~El~~D-~~~vLela~-~~g~vt~~~L~~~l~W~~~Ra~~~L~ 213 (250)
..|+.+|+..++..+..-.. .+..- ...+..+++ ..+.++.+.+++.+|.+.......|+
T Consensus 240 ~~i~~~~~~~~~~~~~~~~~------------------~l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~ 301 (338)
T 3pfi_A 240 EIITEKRANEALNSLGVNEL------------------GFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIE 301 (338)
T ss_dssp SEECHHHHHHHHHHHTCCTT------------------CCCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTH
T ss_pred CccCHHHHHHHHHHhCCccc------------------CCCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHh
Confidence 56999999999887542111 12221 222333444 35568999999999999999999999
Q ss_pred -HHHHcCCceee
Q 025599 214 -ILLEEGLAMVD 224 (250)
Q Consensus 214 -~l~~~Gl~WvD 224 (250)
.|++.|++-..
T Consensus 302 ~~l~~~gli~~~ 313 (338)
T 3pfi_A 302 PYLLANGYIERT 313 (338)
T ss_dssp HHHHHTTSEEEE
T ss_pred HHHHHcCceecC
Confidence 89999998544
No 361
>2iie_A Integration HOST factor; DNA kinking, bending, U-turn, intercalation, divalent, metal, recombination/DNA complex; HET: DNA; 2.41A {Escherichia coli} PDB: 2iif_A*
Probab=29.27 E-value=87 Score=26.16 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=42.4
Q ss_pred cchhhhHHHHHH-----HhhhhcccCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhcc-----ccCCCeEE
Q 025599 94 DFYYELGVQIVE-----ICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLK-----VLGNGYEV 159 (250)
Q Consensus 94 dfy~eLavqIve-----vC~~tr~~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~-----~LG~g~~v 159 (250)
+++-.-+-.+|| ||.+.-..+.|.|+-+||+..|.+.-+ +|..|+..+++.|- .|..|-.|
T Consensus 18 ~l~~~~v~~~Ve~~l~~i~~~L~~~~~~~Mtk~eLi~~ia~~~~-----lsk~da~~vl~~l~~~i~~~L~~G~~V 88 (204)
T 2iie_A 18 HIPAKTVEDAVKEMLEHMASTLAQGGSGGLTKAEMSEYLFDKLG-----LSKRDAKELVELFFEEIRRALENGEQV 88 (204)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHTCCSSSBCHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CccHHHHHHHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence 344444445554 444555578899999999999998644 89999999998774 35555443
No 362
>2wdt_A Ubiquitin carboxyl-terminal hydrolase L3; hydrolase-protein binding complex, enzyme-ligand complex, UB isopeptidase, UCH-L superfamily, cystein proteinase, peptid hydrolase; 2.30A {Plasmodium falciparum} PDB: 2we6_A
Probab=29.11 E-value=26 Score=30.26 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=19.3
Q ss_pred ccccChhHHHHHHHHHHHcCCCCC
Q 025599 56 DIRKNPTFRSQFHEMCAKVGVDPL 79 (250)
Q Consensus 56 eI~~dp~fR~~F~~mC~siGVDPL 79 (250)
.|-+||++ |.+++..+||.|+
T Consensus 9 plESnP~V---ft~l~~~lGv~~~ 29 (232)
T 2wdt_A 9 PLESNPDS---LYLYSCKLGQSKL 29 (232)
T ss_dssp CCBCCHHH---HHHHHHHHTCCSE
T ss_pred eecCCHHH---HHHHHHHhCCCCe
Confidence 58899999 9999999999985
No 363
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=28.96 E-value=1.1e+02 Score=20.26 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=27.9
Q ss_pred cCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCC
Q 025599 113 HNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNG 156 (250)
Q Consensus 113 ~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~g 156 (250)
.+.|.|+..|+...+... ...+|++++...++.+.+=+.|
T Consensus 35 d~~G~i~~~el~~~l~~~----~~~~~~~~~~~l~~~~d~~~~g 74 (87)
T 1s6j_A 35 DNSGTITFDELKDGLKRV----GSELMESEIKDLMDAADIDKSG 74 (87)
T ss_dssp TCSSCEEHHHHHHHHHTT----TSSCCHHHHHHHHHHHCTTCSS
T ss_pred CCCCcCcHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCCCCC
Confidence 445888888888777654 2457888888777776554444
No 364
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor supressor, CAL binding protein; 1.30A {Homo sapiens} SCOP: a.39.1.2 PDB: 2rgi_A 4duq_A
Probab=28.96 E-value=47 Score=24.03 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=29.5
Q ss_pred cccCCCceeHHHHHHHHHhhcCC-CCCCCCHHHHHHHHhhccccCCC
Q 025599 111 RPHNGGLINLQELCNLLRQRRKS-NREAVSEDDCLRAISKLKVLGNG 156 (250)
Q Consensus 111 r~~nGGli~l~el~~~v~k~R~~-~~~~IS~~DI~rAik~L~~LG~g 156 (250)
++-+||.|+..||...+.+.-+. ....+|+++|.+-++.+-.=|.|
T Consensus 23 ~dgdgG~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~d~DG 69 (98)
T 3n22_A 23 QEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQ 69 (98)
T ss_dssp TSSSTTSBCHHHHHHHHHHHCHHHHCSSCCHHHHHHHHHHHCTTSSS
T ss_pred cCCCCCeECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCCCC
Confidence 34455799999988877752110 12357888888877777665544
No 365
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=28.80 E-value=86 Score=23.36 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=13.6
Q ss_pred CCCCHHHHHHHHhhc
Q 025599 136 EAVSEDDCLRAISKL 150 (250)
Q Consensus 136 ~~IS~~DI~rAik~L 150 (250)
..|+++||..|++.+
T Consensus 80 ktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 80 KTVTSLDVVYALKRQ 94 (103)
T ss_dssp SEECHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHc
Confidence 569999999999987
No 366
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=28.78 E-value=88 Score=26.92 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=33.5
Q ss_pred CCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 189 QGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 189 ~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
.|.+|+++|++.+|.+....+..|..|...|++-.+
T Consensus 36 ~g~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~~~ 71 (332)
T 3i53_A 36 AGHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRD 71 (332)
T ss_dssp TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEec
Confidence 478999999999999999999999999999999766
No 367
>2krc_A DNA-directed RNA polymerase subunit delta; delta subunit, GRAM-positive bacteria, nucleotidyltransferase, transcription, transferase; NMR {Bacillus subtilis}
Probab=28.66 E-value=27 Score=26.32 Aligned_cols=61 Identities=18% Similarity=0.226 Sum_probs=42.8
Q ss_pred HHHHhhhhcccCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccc---cCCCeEEEEEC-CEEEEEe
Q 025599 103 IVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKV---LGNGYEVISVG-KKKLVRS 170 (250)
Q Consensus 103 IvevC~~tr~~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~---LG~g~~vi~ig-~~~~v~s 170 (250)
.||++.+-...+|--|++.||...|.+..+ +|.+++.+.+..+=. +.+-| +.+| |+-=+++
T Consensus 15 miDvAy~iL~~~~~~~~F~dL~~eV~~~~~-----~s~ee~~~~iaqfYTdLn~DGRF--i~lGen~WgLr~ 79 (99)
T 2krc_A 15 LVEIAHELFEEHKKPVPFQELLNEIASLLG-----VKKEELGDRIAQFYTDLNIDGRF--LALSDQTWGLRS 79 (99)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHHHHHT-----SCGGGGTHHHHHHHHHHHTCSSC--EESSSSEEECGG
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHhccCCe--eECCCCceecCc
Confidence 566666666677899999999999999876 788988777765532 34434 4556 4444444
No 368
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=28.65 E-value=1.1e+02 Score=21.72 Aligned_cols=43 Identities=21% Similarity=0.270 Sum_probs=34.9
Q ss_pred CCccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHH
Q 025599 172 PTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILL 216 (250)
Q Consensus 172 p~El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~ 216 (250)
...|+..+..||.+.. .|+ |..++++.+|.+..-++..+..+.
T Consensus 27 ~~~Lt~rE~~Vl~l~~-~G~-s~~eIA~~L~iS~~TV~~~~~~i~ 69 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE-KGF-TNQEIADALHLSKRSIEYSLTSIF 69 (90)
T ss_dssp --CCCHHHHHHHHHHH-TTC-CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH-cCC-CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3478888999999887 455 999999999999999888887553
No 369
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein, EF-hand, calcium regulation, oligomer neuronal development, spine2; 2.03A {Danio rerio}
Probab=28.61 E-value=93 Score=22.23 Aligned_cols=45 Identities=11% Similarity=-0.013 Sum_probs=26.5
Q ss_pred ccCCCceeHHHHHHHHHhhcCC-CCCCCCHHHHHHHHhhccccCCC
Q 025599 112 PHNGGLINLQELCNLLRQRRKS-NREAVSEDDCLRAISKLKVLGNG 156 (250)
Q Consensus 112 ~~nGGli~l~el~~~v~k~R~~-~~~~IS~~DI~rAik~L~~LG~g 156 (250)
+-+||.|+..||...+...-+. ....+|+++|..-++.+-.=|.|
T Consensus 23 dg~gG~I~~~El~~~l~~~~~~~lg~~~~~~~v~~l~~~~D~d~dG 68 (99)
T 2y5i_A 23 EGDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDN 68 (99)
T ss_dssp SSSTTEECHHHHHHHHHHHSGGGGTTSCCHHHHHHHHHHHCTTCSS
T ss_pred CCCcCcCCHHHHHHHHHHHhhhhccccccHHHHHHHHHHHCCCCCC
Confidence 3445688888888777642221 12456777777766665543433
No 370
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=28.57 E-value=62 Score=27.62 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=36.9
Q ss_pred HHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 181 QILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 181 ~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
.++-++=..|..|+++|++.+|-+..-....|..|.+.|++-..
T Consensus 168 ~~l~~~l~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~~~ 211 (232)
T 2qlz_A 168 AILHYLLLNGRATVEELSDRLNLKEREVREKISEMARFVPVKII 211 (232)
T ss_dssp HHHHHHHHSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEEEE
T ss_pred HHHHHHHhcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeEEe
Confidence 33333345689999999999999999999999999999998754
No 371
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=28.24 E-value=1e+02 Score=21.86 Aligned_cols=42 Identities=21% Similarity=0.293 Sum_probs=35.6
Q ss_pred HHHHHHHh--CCCccHHHHHHhcCC-ChHHHHHHHHHHHHcCCce
Q 025599 181 QILELAQA--QGFVTVDEVERRLSW-TSGRAIDALDILLEEGLAM 222 (250)
Q Consensus 181 ~vLela~~--~g~vt~~~L~~~l~W-~~~Ra~~~L~~l~~~Gl~W 222 (250)
+.+++++. .|.++..++++.++. .+-|.-.+++.|+.-|++=
T Consensus 18 kFi~l~~~~~~~~i~l~~aa~~L~v~~kRRiYDI~NVLe~igli~ 62 (76)
T 1cf7_A 18 KFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIE 62 (76)
T ss_dssp HHHHHHHHSSTTEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHhCCCCcCcHHHHHHHhCCccceehhhHHHHHhHhccee
Confidence 35566653 689999999999999 9999999999999988763
No 372
>1r9d_A Glycerol dehydratase; radical SAM, lyase; 1.80A {Clostridium butyricum} SCOP: c.7.1.1 PDB: 1r8w_A 1r9e_A
Probab=28.24 E-value=1.6e+02 Score=29.82 Aligned_cols=94 Identities=12% Similarity=0.160 Sum_probs=59.3
Q ss_pred ccChhHHHHHHHHHHHcCCCCCCCCCcccccccccccchhhhHHHHHHHhhhhcccCCCceeH---HHHHHHHHhhcCCC
Q 025599 58 RKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINL---QELCNLLRQRRKSN 134 (250)
Q Consensus 58 ~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~nGGli~l---~el~~~v~k~R~~~ 134 (250)
..||.-+..+++|....+-+|.-.-++||- ++- .-|+..|+++ .+.||.-|++ +.++--.-++ .
T Consensus 233 e~d~~rk~EL~~iA~~~~~vp~~pa~tf~E-AlQ-~~~f~~l~~~--------~E~ng~~~S~GR~Dq~L~Pyy~~-D-- 299 (787)
T 1r9d_A 233 TSDAKRKAELNEIAKICSKVSGEGAKSFYE-ACQ-LFWFIHAIIN--------IESNGHSISPARFDQYMYPYYEN-D-- 299 (787)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSCCCSHHH-HHH-HHHHHHHHHH--------HHCCCSCBCCBSHHHHHHHHHHH-C--
T ss_pred ccCHHHHHHHHHHHHHhcccccCCCCCHHH-HHH-HHHHHHHHhh--------hccCCCcccCccHHHHHHHHHhc-c--
Confidence 378999999999999999999877777774 331 2334444433 2357866665 4444333332 2
Q ss_pred CCCCCHHHHHHHHhhcc----cc-------------C-CCeEEEEECCE
Q 025599 135 REAVSEDDCLRAISKLK----VL-------------G-NGYEVISVGKK 165 (250)
Q Consensus 135 ~~~IS~~DI~rAik~L~----~L-------------G-~g~~vi~ig~~ 165 (250)
.+ ||+++...-++.+- .. | ..|.-+.|||.
T Consensus 300 l~-lt~eeA~Eli~~f~iK~~~~~~~r~~~~~~~f~G~~~~~~~~iGG~ 347 (787)
T 1r9d_A 300 KN-ITDKFAQELIDCIWIKLNDINKVRDEISTKHFGGYPMYQNLIVGGQ 347 (787)
T ss_dssp SS-CCHHHHHHHHHHHHHHTTTBCCCCCTTHHHHSCSSCCCCEEEECCB
T ss_pred cc-CCHHHHHHHHHHHHHHhhcccccCCcchhhccCCCCCcceEEECCc
Confidence 22 89988887776542 11 1 45777889876
No 373
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=28.15 E-value=1.2e+02 Score=19.38 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=20.1
Q ss_pred CCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccc
Q 025599 114 NGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKV 152 (250)
Q Consensus 114 nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~ 152 (250)
+-|.|+..|+...+... | ..+|++++...++.+..
T Consensus 20 ~~G~i~~~el~~~l~~~-g---~~~~~~~~~~~~~~~d~ 54 (77)
T 2joj_A 20 KTGSIDYHELKVAMRAL-G---FDVKKPEILELMNEYDR 54 (77)
T ss_dssp SSSEEEHHHHHHHHHHH-T---CCCHHHHHHHHHHHHCC
T ss_pred CCCCCcHHHHHHHHHHh-C---CCCCHHHHHHHHHHHCC
Confidence 34677777776666554 2 34566666655555443
No 374
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5
Probab=28.09 E-value=2.1e+02 Score=22.10 Aligned_cols=30 Identities=7% Similarity=0.151 Sum_probs=19.1
Q ss_pred HHHHHHHHHHh-cccccccChhHHHHHHHHHHHcCC
Q 025599 42 FRSQLEDFARK-HKNDIRKNPTFRSQFHEMCAKVGV 76 (250)
Q Consensus 42 F~~~L~~Fa~~-h~~eI~~dp~fR~~F~~mC~siGV 76 (250)
++.....|-.. +.+.|..+ .|+.++..+|.
T Consensus 24 l~~~f~~~D~~~~~G~i~~~-----e~~~~l~~~~~ 54 (204)
T 1jba_A 24 LQEWYKKFLEECPSGTLFMH-----EFKRFFKVPDN 54 (204)
T ss_dssp HHHHHHHHHSSSTTCCEEHH-----HHHHHHHCCSS
T ss_pred HHHHHHHHHhhCCCCCcCHH-----HHHHHHHHhcC
Confidence 34445556666 56666543 57788888887
No 375
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=27.89 E-value=1.2e+02 Score=24.52 Aligned_cols=30 Identities=13% Similarity=0.270 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccC
Q 025599 31 RTDLMKEQLATFRSQLEDFARKHKNDIRKN 60 (250)
Q Consensus 31 ~~~~l~~qL~~F~~~L~~Fa~~h~~eI~~d 60 (250)
+...+....+.|...|+.|+..|+.+....
T Consensus 53 ~~~~l~~~i~~l~~~l~~y~e~~r~elf~k 82 (171)
T 2p2u_A 53 KSAPLLARRKELEDGVATFATLNKTEMFKD 82 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhcCC
Confidence 445666777888888888888888777543
No 376
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=27.45 E-value=54 Score=25.55 Aligned_cols=34 Identities=26% Similarity=0.269 Sum_probs=30.9
Q ss_pred CccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 191 FVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 191 ~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
.+|.++|++-+|-++.-.-.+|..|.++|++=++
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 197 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVK 197 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 3799999999999999999999999999997554
No 377
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Probab=27.41 E-value=1.9e+02 Score=21.48 Aligned_cols=94 Identities=9% Similarity=0.103 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCCCCCCcccccccccccchhhhHHHHHHH
Q 025599 27 VAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEI 106 (250)
Q Consensus 27 l~~~~~~~l~~qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvev 106 (250)
+...++..+-..+..++.....|-.++.+.|..+ .|+.++.++|..+ . .+-...++..
T Consensus 59 i~~~eF~~~~~~~~~~~~~F~~~D~d~~G~i~~~-----el~~~l~~~g~~~-~----------------~~~~~~~~~~ 116 (167)
T 1gjy_A 59 MGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQ-----ELQKALTTMGFRL-N----------------PQTVNSIAKR 116 (167)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHCTTCCSEECHH-----HHHHHHHTTTCCC-C----------------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCHH-----HHHHHHHHcCCCC-C----------------HHHHHHHHHH
Confidence 4444455555555556666666666666666554 4556666666432 1 0112233333
Q ss_pred hhhhcccCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCe
Q 025599 107 CLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGY 157 (250)
Q Consensus 107 C~~tr~~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~g~ 157 (250)
+ .+.|-|+..|.+..+.+. +++.++.+.+-+=|.|+
T Consensus 117 ~-----d~dg~i~~~eF~~~~~~~----------~~~~~~F~~~D~d~~G~ 152 (167)
T 1gjy_A 117 Y-----STSGKITFDDYIACCVKL----------RALTDSFRRRDSAQQGM 152 (167)
T ss_dssp T-----CBTTBEEHHHHHHHHHHH----------HHHHHHHHHHCTTCCSE
T ss_pred h-----CcCCcCcHHHHHHHHHHH----------HHHHHHHHHhCCCCCee
Confidence 3 345788898888777653 56666777666666665
No 378
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=27.25 E-value=57 Score=22.86 Aligned_cols=35 Identities=9% Similarity=0.099 Sum_probs=24.3
Q ss_pred ccchhhhHHHHHHHhhhhcccCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhc
Q 025599 93 GDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKL 150 (250)
Q Consensus 93 gdfy~eLavqIvevC~~tr~~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L 150 (250)
.+|...|+.+=.++|.. ++ ...|+.+||..|++.|
T Consensus 36 ~~Fi~~la~eA~~~a~~------------------~~-----rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 36 LLFLHRLAEEARTNAFE------------------NK-----SKIIKPEHTIAAAKVI 70 (76)
T ss_dssp HHHHHHHHHHHHHHHHH------------------HT-----CSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------------------cC-----CCCCCHHHHHHHHHHH
Confidence 46666776666666543 11 2469999999999876
No 379
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=27.11 E-value=61 Score=25.86 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=31.3
Q ss_pred CccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 191 FVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 191 ~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
.+|.++|++-+|.+++-.-.+|..|.++|++=++
T Consensus 180 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 213 (232)
T 2gau_A 180 YLSREELATLSNMTVSNAIRTLSTFVSERMLALD 213 (232)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeC
Confidence 4799999999999999999999999999998655
No 380
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Probab=27.10 E-value=1.7e+02 Score=22.52 Aligned_cols=122 Identities=13% Similarity=0.253 Sum_probs=61.4
Q ss_pred HHHHHHHHHh-cccccccChhHHHHHHHHHHHcCCCCCCCCCcccccccccccchhhhHHHHHHHhhhhcccCCCceeHH
Q 025599 43 RSQLEDFARK-HKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQ 121 (250)
Q Consensus 43 ~~~L~~Fa~~-h~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~nGGli~l~ 121 (250)
+.....|-.. +.+.|.. ..|..++.++|.+|.... ...++...+ -..+.|.|+..
T Consensus 17 ~~~f~~fd~~~~~G~i~~-----~e~~~~l~~~~~~~~~~~----------------~~~~~f~~~---D~d~~G~I~~~ 72 (198)
T 2r2i_A 17 HQWYKKFMTECPSGQLTL-----YEFKQFFGLKNLSPSANK----------------YVEQMFETF---DFNKDGYIDFM 72 (198)
T ss_dssp HHHHHHHHHHCTTSEECH-----HHHHHHHTCCSCCHHHHH----------------HHHHHHHHH---CTTCSSCEEHH
T ss_pred HHHHHHHHHhCCCCcCCH-----HHHHHHHHHhCCCcchHH----------------HHHHHHHHH---CCCCCCeEcHH
Confidence 3444556666 6777764 367788888887653200 011111111 11234667777
Q ss_pred HHHHHHHhhcC----------------CCCCCCCHHHHHHHHhhccccCCCeEEEEECCEEEEEecCCccchhH--HHHH
Q 025599 122 ELCNLLRQRRK----------------SNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDH--NQIL 183 (250)
Q Consensus 122 el~~~v~k~R~----------------~~~~~IS~~DI~rAik~L~~LG~g~~vi~ig~~~~v~svp~El~~D~--~~vL 183 (250)
|+...+..... .....||.+++.+++..+..++. .+..++.+. ..++
T Consensus 73 Ef~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~Ef~~~~~~~~~~~~---------------~~~~~~~~~~~~~~f 137 (198)
T 2r2i_A 73 EYVAALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINR---------------CNEAMTAEEFTNMVF 137 (198)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHTTGGGG---------------SSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHccCchHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhhcC---------------CCchhhHHHHHHHHH
Confidence 77665554311 11234666666666655433220 012233222 2234
Q ss_pred HHHH--hCCCccHHHHHHhcCC
Q 025599 184 ELAQ--AQGFVTVDEVERRLSW 203 (250)
Q Consensus 184 ela~--~~g~vt~~~L~~~l~W 203 (250)
..+. ..|+||.+++...+.-
T Consensus 138 ~~~D~d~dG~I~~~Ef~~~~~~ 159 (198)
T 2r2i_A 138 DKIDINGDGELSLEEFMEGVQK 159 (198)
T ss_dssp HHHCTTCSSEECHHHHHHHHTT
T ss_pred HHhCCCCCCcCcHHHHHHHHHc
Confidence 4443 3699999999987763
No 381
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=26.95 E-value=1.6e+02 Score=21.78 Aligned_cols=75 Identities=20% Similarity=0.288 Sum_probs=49.0
Q ss_pred hhHHHHHHHhhhhcccCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEE-C--CEEEEEecCCc
Q 025599 98 ELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISV-G--KKKLVRSVPTE 174 (250)
Q Consensus 98 eLavqIvevC~~tr~~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~g~~vi~i-g--~~~~v~svp~E 174 (250)
+.|.+|+..+.... .|+.++..|+-.++ .||+.-+.+.++.|+..| | |... | |.+.+---|.+
T Consensus 9 ~~al~iL~~la~~~--~~~~~s~~ela~~~---------~i~~~~v~~il~~L~~~G--l-v~~~~g~~ggy~L~~~~~~ 74 (129)
T 2y75_A 9 RYGLTIMIELAKKH--GEGPTSLKSIAQTN---------NLSEHYLEQLVSPLRNAG--L-VKSIRGAYGGYVLGSEPDA 74 (129)
T ss_dssp HHHHHHHHHHHHTT--TSCCBCHHHHHHHT---------TSCHHHHHHHHHHHHHTT--S-EEEC----CCEEESSCGGG
T ss_pred HHHHHHHHHHHhCC--CCCcCCHHHHHHHH---------CcCHHHHHHHHHHHHHCC--c-eEecCCCCCceEeCCCHHH
Confidence 45667776553322 57788999987664 389999999999999866 4 4443 2 33444444677
Q ss_pred cchhHHHHHHHHHh
Q 025599 175 LNKDHNQILELAQA 188 (250)
Q Consensus 175 l~~D~~~vLela~~ 188 (250)
++.-. |++..+.
T Consensus 75 itl~d--i~~~~e~ 86 (129)
T 2y75_A 75 ITAGD--IIRVLEG 86 (129)
T ss_dssp CBHHH--HHHHHHC
T ss_pred CcHHH--HHHHHcC
Confidence 77444 6766664
No 382
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=26.90 E-value=60 Score=26.01 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=33.1
Q ss_pred CCCccHHHHHHhcC--------------CChHHHHHHHHHHHHcCCceeec
Q 025599 189 QGFVTVDEVERRLS--------------WTSGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 189 ~g~vt~~~L~~~l~--------------W~~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
.|-+-+..|++.|| -+..-++++|..|+.+|++-...
T Consensus 65 ~g~~G~~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~~ 115 (150)
T 2v7f_A 65 DGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVP 115 (150)
T ss_dssp HCSBCHHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEET
T ss_pred hCCCCHHHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEeC
Confidence 45777899999999 99999999999999999998773
No 383
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=26.71 E-value=13 Score=31.60 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=4.4
Q ss_pred CCc-cHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 190 GFV-TVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 190 g~v-t~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
..+ |..+|++.+|-|..-++.+|..|+.+|++-.-
T Consensus 38 ~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 73 (247)
T 2ra5_A 38 SLLGNEIELAARLGLSRPTVRQAIQSLVDKGLLVRR 73 (247)
T ss_dssp ------------------------------CEEEEE
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 456 89999999999999999999999999998654
No 384
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=26.59 E-value=1.6e+02 Score=22.02 Aligned_cols=108 Identities=13% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCCCCC---------CcccccccccccchhhhH--HHHHHHhh
Q 025599 40 ATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASN---------KGFWAELLGIGDFYYELG--VQIVEICL 108 (250)
Q Consensus 40 ~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL~s~---------k~~ws~~lG~gdfy~eLa--vqIvevC~ 108 (250)
..++.....|-.++.+.|..+ .|..++.++|..|+... ..--+..+...+|..-+. .++-++..
T Consensus 7 ~~l~~~F~~~D~d~~G~i~~~-----e~~~~l~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~F~ 81 (172)
T 2znd_A 7 SFLWNVFQRVDKDRSGVISDT-----ELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFR 81 (172)
T ss_dssp HHHHHHHHHHCTTCSSCEEHH-----HHHHHCCCSSSSCCCHHHHHHHHHHHCSSSSSEECHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhCCCCCCcCcHH-----HHHHHHHhcCCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHHHHHHHHH
Q ss_pred hhcccCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCC
Q 025599 109 ATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNG 156 (250)
Q Consensus 109 ~tr~~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~g 156 (250)
.-=..+-|.|+..|+...+... ...++++++...++.+.+=|.|
T Consensus 82 ~~D~d~~G~i~~~el~~~l~~~----g~~~~~~~~~~~~~~~d~~~dg 125 (172)
T 2znd_A 82 TYDRDNSGMIDKNELKQALSGF----GYRLSDQFHDILIRKFDRQGRG 125 (172)
T ss_dssp HHCTTCSSEECHHHHHHHHHHT----TCCCCHHHHHHHHHHHCTTCSS
T ss_pred HHCCCCCCccCHHHHHHHHHHc----CCCCCHHHHHHHHHHhCCCCCC
No 385
>4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A*
Probab=26.58 E-value=37 Score=31.03 Aligned_cols=84 Identities=13% Similarity=0.221 Sum_probs=51.7
Q ss_pred CCHHHHHHHH-hhccccCCCeEEEEEC-CEEEEEecCCccchhHHHHHHHHHhCC---CccHHHHHHhcCCChHHHHHHH
Q 025599 138 VSEDDCLRAI-SKLKVLGNGYEVISVG-KKKLVRSVPTELNKDHNQILELAQAQG---FVTVDEVERRLSWTSGRAIDAL 212 (250)
Q Consensus 138 IS~~DI~rAi-k~L~~LG~g~~vi~ig-~~~~v~svp~El~~D~~~vLela~~~g---~vt~~~L~~~l~W~~~Ra~~~L 212 (250)
-+++++.+.+ +.+.. .||+.+++. |... ...+..+..|-..|-.+-+..| -+.++ .|-+|+...|...+
T Consensus 138 ~~~e~~~~~a~~~~~~--~G~~~~KlKvG~~~-~~~~~~~~~d~~~v~avR~a~g~~~~l~vD---aN~~~~~~~A~~~~ 211 (393)
T 4dwd_A 138 RSVDEVVREVARRVEA--EQPAAVKIRWDGDR-TRCDVDIPGDIAKARAVRELLGPDAVIGFD---ANNGYSVGGAIRVG 211 (393)
T ss_dssp SCHHHHHHHHHHHHHH--HCCSEEEEECCCCT-TCCSCCHHHHHHHHHHHHHHHCTTCCEEEE---CTTCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH--cCCCEEEEccCCCC-cccccCHHHHHHHHHHHHHHhCCCCeEEEE---CCCCCCHHHHHHHH
Confidence 3678887777 65533 378888874 3200 0012244445444433333222 23332 47799999999999
Q ss_pred HHHHHcCCceeecCC
Q 025599 213 DILLEEGLAMVDDGH 227 (250)
Q Consensus 213 ~~l~~~Gl~WvD~q~ 227 (250)
..|...|+.|+.+-.
T Consensus 212 ~~L~~~~i~~iEqP~ 226 (393)
T 4dwd_A 212 RALEDLGYSWFEEPV 226 (393)
T ss_dssp HHHHHTTCSEEECCS
T ss_pred HHHHhhCCCEEECCC
Confidence 999999999998654
No 386
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=26.55 E-value=58 Score=25.51 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=30.6
Q ss_pred ccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 192 VTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 192 vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
+|.++|++-+|-++.-.-.+|..|.++|++=++
T Consensus 147 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~ 179 (202)
T 2zcw_A 147 ATHDELAAAVGSVRETVTKVIGELAREGYIRSG 179 (202)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeC
Confidence 789999999999999999999999999998655
No 387
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=26.26 E-value=1.7e+02 Score=23.28 Aligned_cols=57 Identities=23% Similarity=0.299 Sum_probs=39.5
Q ss_pred hHHHHHHHHHhCCCccHHHHHHhc---CCChHHHHHHHH-HHHHcCCceeecCCCCCCcceeecC
Q 025599 178 DHNQILELAQAQGFVTVDEVERRL---SWTSGRAIDALD-ILLEEGLAMVDDGHRDRKRRYWFPC 238 (250)
Q Consensus 178 D~~~vLela~~~g~vt~~~L~~~l---~W~~~Ra~~~L~-~l~~~Gl~WvD~q~~~~e~~Yw~P~ 238 (250)
-|..++++.+..+..|.++|.+.| |+... +..+. +|-+-|.+=+=+.. |...|=.|+
T Consensus 6 R~~~I~~li~~~~~~tq~eL~~~L~~~G~~Vt--qaTisRDL~eL~~vKv~~~~--g~~~Y~lp~ 66 (149)
T 1b4a_A 6 RHIKIREIIMSNDIETQDELVDRLREAGFNVT--QATVSRDIKEMQLVKVPMAN--GRYKYSLPS 66 (149)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCC--HHHHHHHHHHTTCEEEECSS--SCEEEECTT
T ss_pred HHHHHHHHHHHCCCccHHHHHHHHHHcCCCcC--HHHHHHHHHHcCCeEEECCC--CCEEEEeCC
Confidence 477899999999999999999988 55433 23333 56667998887543 244454543
No 388
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=26.24 E-value=59 Score=25.37 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=30.2
Q ss_pred ccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 192 VTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 192 vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
+|.++|++-+|-++.-.-.+|..|.++|++=++
T Consensus 140 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~ 172 (195)
T 3b02_A 140 VSHEEIADATASIRESVSKVLADLRREGLIATA 172 (195)
T ss_dssp CCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 788999999999999999999999999997655
No 389
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens}
Probab=26.23 E-value=1.5e+02 Score=21.57 Aligned_cols=42 Identities=21% Similarity=0.144 Sum_probs=28.3
Q ss_pred CCceeHHHHHHHHHhhcCC-CCCCCCHHHHHHHHhhccccCCC
Q 025599 115 GGLINLQELCNLLRQRRKS-NREAVSEDDCLRAISKLKVLGNG 156 (250)
Q Consensus 115 GGli~l~el~~~v~k~R~~-~~~~IS~~DI~rAik~L~~LG~g 156 (250)
+|.|+..||...+...-|. ....+|+++|.+-++.+-.=|.|
T Consensus 29 ~G~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~dgDG 71 (104)
T 3zwh_A 29 KFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDN 71 (104)
T ss_dssp TTSBCHHHHHHHHHHHCGGGSCSSCCHHHHHHHHHHHCTTCSS
T ss_pred CCeECHHHHHHHHHHHcchhccCCCCHHHHHHHHHHHcCCCCC
Confidence 3899999998887752221 12357888888888777665554
No 390
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=26.18 E-value=91 Score=23.60 Aligned_cols=80 Identities=20% Similarity=0.296 Sum_probs=55.3
Q ss_pred ccccChhHHHHHHHHHHHcCCC--CCCCCCcccccccccc---------cchhhhHHHHHHHhhhhcccCCC-ceeHHHH
Q 025599 56 DIRKNPTFRSQFHEMCAKVGVD--PLASNKGFWAELLGIG---------DFYYELGVQIVEICLATRPHNGG-LINLQEL 123 (250)
Q Consensus 56 eI~~dp~fR~~F~~mC~siGVD--PL~s~k~~ws~~lG~g---------dfy~eLavqIvevC~~tr~~nGG-li~l~el 123 (250)
+....|-=..+|...|..||.| +|+ ..||+. ++-..+..|+.++...=+..+|| --++..|
T Consensus 5 ~~~~~~lt~~~l~~ia~~lg~dWk~LA-------r~Lg~s~~~I~~I~~~~~~~l~eq~~~mL~~W~~~~g~~~Atv~~L 77 (118)
T 2of5_H 5 DAETGFLTQSNLLSVAGRLGLDWPAVA-------LHLGVSYREVQRIRHEFRDDLDEQIRHMLFSWAERQAGQPGAVGLL 77 (118)
T ss_dssp CTTTCCCCHHHHHHHHHTCCTTHHHHH-------HHTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHTTSSCSSHHHHH
T ss_pred CCCcCCCCHHHHHHHHHHHhhHHHHHH-------HHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhccCCCCcHHHHH
Confidence 4455554456799999999976 443 235543 23345778889988888889987 6788888
Q ss_pred HHHHHhhcCCCCCCCCHHHHHHHHhhc
Q 025599 124 CNLLRQRRKSNREAVSEDDCLRAISKL 150 (250)
Q Consensus 124 ~~~v~k~R~~~~~~IS~~DI~rAik~L 150 (250)
+..+.+. -..||..-|...
T Consensus 78 ~~aL~~~--------~r~diae~l~~~ 96 (118)
T 2of5_H 78 VQALEQS--------DRQDVAEEVRAV 96 (118)
T ss_dssp HHHHHHT--------TCHHHHHHHHHH
T ss_pred HHHHHHc--------CcHHHHHHHHHH
Confidence 8888873 456776666543
No 391
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=26.16 E-value=63 Score=23.77 Aligned_cols=35 Identities=11% Similarity=0.073 Sum_probs=28.9
Q ss_pred hHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHH
Q 025599 178 DHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALD 213 (250)
Q Consensus 178 D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~ 213 (250)
-+..++++....+ +|+.+|++.+|.|..-...+|.
T Consensus 8 R~~~I~~~l~~~~-~ti~dlA~~~gVS~~TVsR~L~ 42 (93)
T 2l0k_A 8 RTIKIGKYIVETK-KTVRVIAKEFGVSKSTVHKDLT 42 (93)
T ss_dssp HHHHHHHHHHHHC-CCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHc
Confidence 4566888888766 8999999999999888888775
No 392
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=26.13 E-value=2.5e+02 Score=22.35 Aligned_cols=107 Identities=13% Similarity=0.233 Sum_probs=59.0
Q ss_pred HHHHHHHhcccccccChhHHHHHHHHHHHcCCC-CC--CCCCcc---cccccccccchhhhHHHHHHHhhhhcccCCC--
Q 025599 45 QLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVD-PL--ASNKGF---WAELLGIGDFYYELGVQIVEICLATRPHNGG-- 116 (250)
Q Consensus 45 ~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVD-PL--~s~k~~---ws~~lG~gdfy~eLavqIvevC~~tr~~nGG-- 116 (250)
.+.+|+.--+ + +..++.+.|+.++..+|.+ |. .....| ....||+++--.+.|..|++-+..+--..|=
T Consensus 71 ~l~di~~~~~--v-~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P 147 (200)
T 1ais_B 71 TLDEIADIAR--V-DKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSP 147 (200)
T ss_dssp CHHHHHHHTT--S-CHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCH
T ss_pred CHHHHHHHHC--C-CHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCH
Confidence 4444444332 2 3457888899999999987 32 222221 3345788877788899998888765433221
Q ss_pred -ceeHHHHH--HHHHhhcCCC-----CCCCCHHHHHHHHhhcc-ccC
Q 025599 117 -LINLQELC--NLLRQRRKSN-----REAVSEDDCLRAISKLK-VLG 154 (250)
Q Consensus 117 -li~l~el~--~~v~k~R~~~-----~~~IS~~DI~rAik~L~-~LG 154 (250)
.|.-.-|| +++...+-.. ...||+.+|.+..+.|. .||
T Consensus 148 ~~iAaAaly~A~~~~~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 148 AGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence 12222222 3332211000 02477888888887774 344
No 393
>3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens} PDB: 3t81_A 3t8l_A
Probab=26.13 E-value=50 Score=31.95 Aligned_cols=34 Identities=24% Similarity=0.220 Sum_probs=27.6
Q ss_pred CCHHHHHHHHhhccccCCCeEEEEECCEEEEEecCC
Q 025599 138 VSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPT 173 (250)
Q Consensus 138 IS~~DI~rAik~L~~LG~g~~vi~ig~~~~v~svp~ 173 (250)
-+++|+..|++.|...|+|+.++. +|+ ++-++|-
T Consensus 490 ~~~~dm~~a~~~~~~~~GG~~~v~-~g~-v~~~l~l 523 (608)
T 3nqb_A 490 GNAGDMALAANAVIGTGGGMAVAS-EGK-VTAILPL 523 (608)
T ss_dssp SSHHHHHHHHHHHHHTTSEEEEEE-TTE-EEEEEEC
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEE-CCE-EEEEecc
Confidence 479999999999999999998875 555 4556653
No 394
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=26.04 E-value=91 Score=21.17 Aligned_cols=48 Identities=15% Similarity=0.252 Sum_probs=36.5
Q ss_pred HHHHHHhhhhcccCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCC
Q 025599 101 VQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGN 155 (250)
Q Consensus 101 vqIvevC~~tr~~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~ 155 (250)
..|+++... .+||-++..||+..+.+. + ..||..=|.|.++.|...|-
T Consensus 20 ~~IL~~l~~---~~~~~~s~~el~~~l~~~-~---~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 20 LKILEVLQE---PDNHHVSAEDLYKRLIDM-G---EEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHHHTS---GGGSSBCHHHHHHHHHHT-T---CCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHh---CCCCCCCHHHHHHHHHHh-C---CCCCHhhHHHHHHHHHHCCC
Confidence 446665543 233679999999999764 2 46999999999999998774
No 395
>3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana}
Probab=26.02 E-value=18 Score=32.80 Aligned_cols=77 Identities=21% Similarity=0.309 Sum_probs=49.4
Q ss_pred HHHHHHHHhhccccCCCeEEEEEC-CEEEEEecC-CccchhHHHHHHHHHhCC---CccHHHHHHhcCCC-hHHHHHHHH
Q 025599 140 EDDCLRAISKLKVLGNGYEVISVG-KKKLVRSVP-TELNKDHNQILELAQAQG---FVTVDEVERRLSWT-SGRAIDALD 213 (250)
Q Consensus 140 ~~DI~rAik~L~~LG~g~~vi~ig-~~~~v~svp-~El~~D~~~vLela~~~g---~vt~~~L~~~l~W~-~~Ra~~~L~ 213 (250)
++++.++++.+.. .||..+++. |. + ..+..|-..|-.+-+..| -+.++ .|-+|+ ...|...+.
T Consensus 147 ~e~~~~~a~~~~~--~Gf~~iKlk~g~------~g~~~~~d~~~v~avR~a~g~~~~l~vD---an~~~~d~~~A~~~~~ 215 (374)
T 3sjn_A 147 PEDNVAIVQGLKD--QGFSSIKFGGGV------MGDDPDTDYAIVKAVREAAGPEMEVQID---LASKWHTCGHSAMMAK 215 (374)
T ss_dssp GGGGHHHHHHHHT--TTCSEEEEECTT------TTSCHHHHHHHHHHHHHHHCSSSEEEEE---CTTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCEEEeccCC------CCCCHHHHHHHHHHHHHHhCCCCeEEEE---CCCCCCCHHHHHHHHH
Confidence 3888777776644 378888874 32 2 233434333333323222 23332 477999 999999999
Q ss_pred HHHHcCCceeecCC
Q 025599 214 ILLEEGLAMVDDGH 227 (250)
Q Consensus 214 ~l~~~Gl~WvD~q~ 227 (250)
.|...|+.|+.+-.
T Consensus 216 ~l~~~~i~~iEqP~ 229 (374)
T 3sjn_A 216 RLEEFNLNWIEEPV 229 (374)
T ss_dssp HSGGGCCSEEECSS
T ss_pred HhhhcCceEEECCC
Confidence 99999999998654
No 396
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.94 E-value=1.4e+02 Score=22.50 Aligned_cols=47 Identities=21% Similarity=0.257 Sum_probs=37.4
Q ss_pred HHHHHHhhhhcccCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCC
Q 025599 101 VQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGN 155 (250)
Q Consensus 101 vqIvevC~~tr~~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~ 155 (250)
..|+++... +++-++..||+..+.+. ...||..=|.|.++.|...|-
T Consensus 14 ~~Il~~l~~----~~~~~sa~ei~~~l~~~----~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 14 AAISTLLET----LDDFRSAQELHDELRRR----GENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHH----CCSCEEHHHHHHHHHHT----TCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHh----CCCCCCHHHHHHHHHHh----CCCCCHhhHHHHHHHHHHCCC
Confidence 456666653 35679999999999875 256999999999999998774
No 397
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A
Probab=25.82 E-value=1.5e+02 Score=19.78 Aligned_cols=39 Identities=8% Similarity=0.289 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHH-Hhccc-ccccChhHHHHHHHHHHH-----cCCC
Q 025599 34 LMKEQLATFRSQLEDFA-RKHKN-DIRKNPTFRSQFHEMCAK-----VGVD 77 (250)
Q Consensus 34 ~l~~qL~~F~~~L~~Fa-~~h~~-eI~~dp~fR~~F~~mC~s-----iGVD 77 (250)
++..+++.++.....|- .++.+ -|..+ .|+.++.. +|..
T Consensus 3 ~l~~~~~~l~~~F~~~D~~d~~G~~I~~~-----el~~~l~~~~~~~~g~~ 48 (93)
T 1k2h_A 3 ELETAMETLINVFHAHSGKEGDKYKLSKK-----ELKDLLQTELSSFLDVQ 48 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCCSSCCHH-----HHHHHHHHHTHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHcccCCCcCccCHH-----HHHHHHHHHHHHHhCCC
Confidence 46677788888888888 67777 77654 45556555 6654
No 398
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=25.81 E-value=1.3e+02 Score=23.11 Aligned_cols=41 Identities=15% Similarity=0.234 Sum_probs=30.2
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHH
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDIL 215 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l 215 (250)
.|+..+..|+.+.-..| .|.+++++.+|.+..-++..|...
T Consensus 140 ~L~~~~r~vl~l~~~~g-~s~~EIA~~lgis~~tV~~~l~ra 180 (194)
T 1or7_A 140 SLPEDLRMAITLRELDG-LSYEEIAAIMDCPVGTVRSRIFRA 180 (194)
T ss_dssp HSCHHHHHHHHHHHTTC-CCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred hCCHHHHHHhHHHHHcC-CCHHHHHHHHCCCHHHHHHHHHHH
Confidence 45566666776655555 499999999999988777766644
No 399
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Probab=25.74 E-value=78 Score=23.70 Aligned_cols=38 Identities=24% Similarity=0.171 Sum_probs=17.6
Q ss_pred CCceeHHHHHHHHHhhcCC-CCCCCCHHHHHHHHhhccc
Q 025599 115 GGLINLQELCNLLRQRRKS-NREAVSEDDCLRAISKLKV 152 (250)
Q Consensus 115 GGli~l~el~~~v~k~R~~-~~~~IS~~DI~rAik~L~~ 152 (250)
||.|+..||...+...-+. ....+|+++|.+-++.+-.
T Consensus 38 GG~Is~~EL~~~l~~~l~~~lg~~~t~~ev~~li~~~D~ 76 (113)
T 2lnk_A 38 KFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDS 76 (113)
T ss_dssp TTCBCHHHHHHHHHHHCGGGGTTCCCTTHHHHHHHHHCS
T ss_pred CCEECHHHHHHHHHHHcchhcCCCCCHHHHHHHHHHhCC
Confidence 3566666666555431110 1123455555555544433
No 400
>1msz_A DNA-binding protein smubp-2; R3H fold; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=25.68 E-value=75 Score=23.35 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcccccc----cChhHHHHHHHHHHHcCCCCC
Q 025599 42 FRSQLEDFARKHKNDIR----KNPTFRSQFHEMCAKVGVDPL 79 (250)
Q Consensus 42 F~~~L~~Fa~~h~~eI~----~dp~fR~~F~~mC~siGVDPL 79 (250)
|+..|..|....+.++. =++.=|+...++|..+|+.=-
T Consensus 21 i~~~l~~F~~~~~~~l~FP~sLs~~eR~~IH~lA~~~GL~h~ 62 (86)
T 1msz_A 21 FRAMIVEFMASKKMQLEFPPSLNSHDRLRVHQIAEEHGLRHD 62 (86)
T ss_dssp HHHHHHHHHHHTCSEEEECTTCCSHHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHhcCCCcEEEcCCCCCHHHHHHHHHHHHHcCCCcc
Confidence 66677777766666666 356789999999999998743
No 401
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Probab=25.39 E-value=1.7e+02 Score=20.16 Aligned_cols=37 Identities=14% Similarity=0.138 Sum_probs=16.7
Q ss_pred CceeHHHHHHHHHhhcCC-CCCCCCHHHHHHHHhhccc
Q 025599 116 GLINLQELCNLLRQRRKS-NREAVSEDDCLRAISKLKV 152 (250)
Q Consensus 116 Gli~l~el~~~v~k~R~~-~~~~IS~~DI~rAik~L~~ 152 (250)
|.|+..||...+...=+. ....+|+++|.+-++.+-.
T Consensus 26 g~Is~~EL~~~l~~~~~~~lg~~~~~~~v~~~~~~~D~ 63 (92)
T 3rm1_A 26 HKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDS 63 (92)
T ss_dssp TSBCHHHHHHHHHHHCTTTSCCCCSHHHHHHHHHHHCT
T ss_pred CeECHHHHHHHHHHHhhhhccCcccHHHHHHHHHHHcC
Confidence 466666665555441000 1133455555555544433
No 402
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=25.14 E-value=1.5e+02 Score=21.99 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=13.5
Q ss_pred CCCCHHHHHHHHhhc
Q 025599 136 EAVSEDDCLRAISKL 150 (250)
Q Consensus 136 ~~IS~~DI~rAik~L 150 (250)
..|+.+||..|++.+
T Consensus 79 KTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 79 KTVTSLDVVYALKRQ 93 (102)
T ss_dssp SEECHHHHHHHHHHT
T ss_pred CcCcHHHHHHHHHHc
Confidence 469999999999987
No 403
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=25.13 E-value=2.4e+02 Score=23.99 Aligned_cols=81 Identities=15% Similarity=0.220 Sum_probs=43.6
Q ss_pred eHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCC-CeEEEEECCEEEEEecCCccchhHHHHHHHHHhCCCccHHHH
Q 025599 119 NLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGN-GYEVISVGKKKLVRSVPTELNKDHNQILELAQAQGFVTVDEV 197 (250)
Q Consensus 119 ~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~-g~~vi~ig~~~~v~svp~El~~D~~~vLela~~~g~vt~~~L 197 (250)
+..++...+.+.-|. ..||..=|.+-++..+. |. +..-.+-+|+ |..++.++ +.++++.....|..+|
T Consensus 24 s~~~~~~~l~~~~g~--~~vs~~tv~~w~~r~~~-g~~~l~~~~r~gr------p~~~~~~~--i~~~v~~~~~~t~~~i 92 (345)
T 3hot_A 24 TAAESHRMLVEAFGE--QVPTVKTCERWFQRFKS-GDFDVDDKEHGKP------PKRYEDAE--LQALLDEDDAQTQKQL 92 (345)
T ss_dssp CHHHHHHHHHHHTCS--CSCCHHHHHHHHHHHTT-CCCCCSCCCCCCC------CCSSCHHH--HHHHHHHCSCCCHHHH
T ss_pred CHHHHHHHHHHHhCC--CCCcHHHHHHHHHHHhC-CCccccCCCCCCC------CCcccHHH--HHHHHHhCccchHHHH
Confidence 445555555554331 24677777777776654 32 1111111233 55665433 6666666677777777
Q ss_pred HHhcCCChHHHHH
Q 025599 198 ERRLSWTSGRAID 210 (250)
Q Consensus 198 ~~~l~W~~~Ra~~ 210 (250)
++.++-+......
T Consensus 93 a~~l~vs~~tV~r 105 (345)
T 3hot_A 93 AEQLEVSQQAVSN 105 (345)
T ss_dssp HHHTTSCHHHHHH
T ss_pred HHHHCCCHHHHHH
Confidence 7766555444333
No 404
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=25.13 E-value=55 Score=31.59 Aligned_cols=76 Identities=12% Similarity=0.037 Sum_probs=42.9
Q ss_pred ChhHHHHHHHHHHHcCCCCCCCCCcccccccccccchhhhHHHHHHHhhhhcccC---------CCceeHHHHH------
Q 025599 60 NPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHN---------GGLINLQELC------ 124 (250)
Q Consensus 60 dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~n---------GGli~l~el~------ 124 (250)
++++-.++..+|..--+.|-.+. ++...|++++.++|... .--++..-+.
T Consensus 395 s~e~L~~yi~~ar~~~~~p~ls~---------------ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA 459 (506)
T 3f8t_A 395 SYTLLRRYLLYAIREHPAPELTE---------------EARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLA 459 (506)
T ss_dssp CHHHHHHHHHHHHHHCSCCEECH---------------HHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCceeCH---------------HHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHH
Confidence 44555577777773334454322 45556666666666521 1113333222
Q ss_pred HHHHhhcCCCCCCCCHHHHHHHHhhccc
Q 025599 125 NLLRQRRKSNREAVSEDDCLRAISKLKV 152 (250)
Q Consensus 125 ~~v~k~R~~~~~~IS~~DI~rAik~L~~ 152 (250)
+...+.++ ...|+++||..|+..++.
T Consensus 460 ~A~A~L~g--R~~V~~eDV~~Ai~L~~~ 485 (506)
T 3f8t_A 460 KAHARMRL--SDDVEPEDVDIAAELVDW 485 (506)
T ss_dssp HHHHHHTT--CSEECHHHHHHHHHHHHH
T ss_pred HHHHHHcC--cCCCCHHHHHHHHHHHHH
Confidence 22233333 478999999999999863
No 405
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=25.12 E-value=76 Score=26.19 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=31.2
Q ss_pred CccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 191 FVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 191 ~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
.+|.++|++-+|-++.-.-.+|..|.++|++=++
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~ 250 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQNLISAH 250 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEc
Confidence 4789999999999999999999999999998664
No 406
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=25.12 E-value=1.6e+02 Score=19.67 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=24.8
Q ss_pred cCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccC
Q 025599 113 HNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLG 154 (250)
Q Consensus 113 ~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG 154 (250)
.+-|.|+..|+...+... + ..+|++++...++.+.+=+
T Consensus 21 d~~G~i~~~el~~~l~~~-g---~~~~~~~~~~l~~~~d~~~ 58 (92)
T 2kn2_A 21 DQNGYISASELRHVMINL-G---EKLTDEEVEQMIKEADLDG 58 (92)
T ss_dssp TCSSEECHHHHHHHHHHT-T---CCCCHHHHHHHHHHHCSSC
T ss_pred CCCCeEcHHHHHHHHHHh-C---CCCCHHHHHHHHHHhCCCC
Confidence 344788888887777654 2 4577777777666654433
No 407
>1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A*
Probab=25.02 E-value=33 Score=31.11 Aligned_cols=77 Identities=13% Similarity=0.134 Sum_probs=49.4
Q ss_pred CHHHHHHHHhhccccCCCeEEEEEC-CEEEEEecCCccchhHHHHHHHHHhCCC---ccHHHHHHhcCCChHHHHHHHHH
Q 025599 139 SEDDCLRAISKLKVLGNGYEVISVG-KKKLVRSVPTELNKDHNQILELAQAQGF---VTVDEVERRLSWTSGRAIDALDI 214 (250)
Q Consensus 139 S~~DI~rAik~L~~LG~g~~vi~ig-~~~~v~svp~El~~D~~~vLela~~~g~---vt~~~L~~~l~W~~~Ra~~~L~~ 214 (250)
+++++.++++.+.. .||..+++. +. ..+..|-..|-.+-+..|. +.+ -.|-+|+...|...+..
T Consensus 165 ~~~~~~~~a~~~~~--~Gf~~iKik~g~-------~~~~~~~e~v~avr~a~g~~~~l~v---Dan~~~~~~~a~~~~~~ 232 (392)
T 1tzz_A 165 GLSMLRGEMRGYLD--RGYNVVKMKIGG-------APIEEDRMRIEAVLEEIGKDAQLAV---DANGRFNLETGIAYAKM 232 (392)
T ss_dssp CHHHHHHHHHHHHT--TTCSEEEEECSS-------SCHHHHHHHHHHHHHHHTTTCEEEE---ECTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--cCCCEEEEcCCC-------CCHHHHHHHHHHHHHhcCCCCeEEE---ECCCCCCHHHHHHHHHH
Confidence 78888877776654 478888874 32 1233333323222232222 222 23679999999999999
Q ss_pred HHHcCCceeecCC
Q 025599 215 LLEEGLAMVDDGH 227 (250)
Q Consensus 215 l~~~Gl~WvD~q~ 227 (250)
|...|+.|+.+-.
T Consensus 233 l~~~~i~~iEqP~ 245 (392)
T 1tzz_A 233 LRDYPLFWYEEVG 245 (392)
T ss_dssp HTTSCCSEEECCS
T ss_pred HHHcCCCeecCCC
Confidence 9999999998654
No 408
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=24.99 E-value=62 Score=28.30 Aligned_cols=35 Identities=14% Similarity=0.049 Sum_probs=32.6
Q ss_pred CCCccHHHHHHhcCCChHHHHHHHHHHHHcCCcee
Q 025599 189 QGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMV 223 (250)
Q Consensus 189 ~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~Wv 223 (250)
.|.+|+++|++.+|.+....+..|..|...|++-.
T Consensus 53 ~g~~t~~elA~~~g~~~~~l~rlLr~l~~~g~l~~ 87 (348)
T 3lst_A 53 DGPRTPAELAAATGTDADALRRVLRLLAVRDVVRE 87 (348)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEe
Confidence 37899999999999999999999999999999976
No 409
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A
Probab=24.94 E-value=1.1e+02 Score=23.85 Aligned_cols=23 Identities=9% Similarity=0.228 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHh--cccccccC
Q 025599 38 QLATFRSQLEDFARK--HKNDIRKN 60 (250)
Q Consensus 38 qL~~F~~~L~~Fa~~--h~~eI~~d 60 (250)
++..++.....|-.+ +.+.|..+
T Consensus 35 ~~~~l~~~F~~~D~d~~~~G~i~~~ 59 (207)
T 2ehb_A 35 EVEALYELFKKLSSSIIDDGLIHKE 59 (207)
T ss_dssp HHHHHHHHHHHHTTSSSCSSCEEHH
T ss_pred HHHHHHHHHHHhccccCCCCccCHH
Confidence 444455555566665 66666543
No 410
>3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A
Probab=24.90 E-value=38 Score=31.49 Aligned_cols=86 Identities=12% Similarity=0.111 Sum_probs=51.3
Q ss_pred CCHHHHHHHHhhccccCCCeEEEEEC-CEEEE---EecCC--ccchhHHHHHHHHHhCC---CccHHHHHHhcCCChHHH
Q 025599 138 VSEDDCLRAISKLKVLGNGYEVISVG-KKKLV---RSVPT--ELNKDHNQILELAQAQG---FVTVDEVERRLSWTSGRA 208 (250)
Q Consensus 138 IS~~DI~rAik~L~~LG~g~~vi~ig-~~~~v---~svp~--El~~D~~~vLela~~~g---~vt~~~L~~~l~W~~~Ra 208 (250)
-+++++.+.++.... .||+.+++. +...- -..|. .+..|-..|-.+-+..| -+.++ .|-+|+..-|
T Consensus 145 ~~~e~~~~~a~~~~~--~Gf~~iKlk~g~~~~~~~G~~~~~~~~~~d~e~v~avR~avG~d~~L~vD---an~~~t~~~A 219 (433)
T 3rcy_A 145 TSADMAAESAADCVA--RGYTAVKFDPAGPYTLRGGHMPAMTDISLSVEFCRKIRAAVGDKADLLFG---THGQFTTAGA 219 (433)
T ss_dssp TCHHHHHHHHHHHHH--TTCSEEEECCSCCCBTTCCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEEC---CCSCBCHHHH
T ss_pred CCHHHHHHHHHHHHH--cCCCEEEEcCCCCcccccCCCcchhhHHHHHHHHHHHHHHhCCCCeEEEe---CCCCCCHHHH
Confidence 478888888777643 579999984 32000 00011 12223222222222222 23332 4779999999
Q ss_pred HHHHHHHHHcCCceeecCCC
Q 025599 209 IDALDILLEEGLAMVDDGHR 228 (250)
Q Consensus 209 ~~~L~~l~~~Gl~WvD~q~~ 228 (250)
...+..|...|+.|+.+-.+
T Consensus 220 ~~~~~~Le~~~i~~iEeP~~ 239 (433)
T 3rcy_A 220 IRLGQAIEPYSPLWYEEPVP 239 (433)
T ss_dssp HHHHHHHGGGCCSEEECCSC
T ss_pred HHHHHHhhhcCCCEEECCCC
Confidence 99999999999999986553
No 411
>3g9k_L Capsule biosynthesis protein CAPD; CAPD protein, the great lakes regional C excellence, GLRCE, capsule biogenesis/degradation; HET: GLU; 1.79A {Bacillus anthracis} PDB: 3ga9_L*
Probab=24.88 E-value=50 Score=29.85 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=21.4
Q ss_pred ccccchh-hhHHHHHHHhhhhcccCCCceeHHHHHH
Q 025599 91 GIGDFYY-ELGVQIVEICLATRPHNGGLINLQELCN 125 (250)
Q Consensus 91 G~gdfy~-eLavqIvevC~~tr~~nGGli~l~el~~ 125 (250)
|...||. ++|.+||+. |+|+++||-.
T Consensus 189 G~~~FY~G~iA~~iv~~---------G~lt~~DLa~ 215 (323)
T 3g9k_L 189 GAKGFYEGGVARAISKT---------AKISLEDIKG 215 (323)
T ss_dssp TTHHHHSHHHHHHHHHH---------HTCCHHHHHT
T ss_pred CcccccCCHHHHHHHHc---------CCCCHHHHhh
Confidence 4568887 899999997 8998888853
No 412
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=24.87 E-value=1.7e+02 Score=21.41 Aligned_cols=37 Identities=11% Similarity=0.210 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCC
Q 025599 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (250)
Q Consensus 38 qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL 79 (250)
++..++.....|-.++.+.|..+ .|..++..+|..|.
T Consensus 25 ~~~~l~~~F~~~D~~~~G~i~~~-----e~~~~l~~~~~~~~ 61 (166)
T 2aao_A 25 EIAGLKEMFNMIDADKSGQITFE-----ELKAGLKRVGANLK 61 (166)
T ss_dssp HHHHHHHHHHHHCTTCCSSBCHH-----HHHHHGGGGTCCCC
T ss_pred HHHHHHHHHHHhCCCCCCeEeHH-----HHHHHHHHhCCCCC
Confidence 34445566666767777777643 57788888887653
No 413
>1e5p_A Aphrodisin; lipocalin, pheromone, hamster,; HET: MSE; 1.63A {Mesocricetus auratus} SCOP: b.60.1.1
Probab=24.86 E-value=41 Score=25.65 Aligned_cols=20 Identities=5% Similarity=0.046 Sum_probs=18.0
Q ss_pred cChhHHHHHHHHHHHcCCCC
Q 025599 59 KNPTFRSQFHEMCAKVGVDP 78 (250)
Q Consensus 59 ~dp~fR~~F~~mC~siGVDP 78 (250)
-+|+...+|++.|.+.|+|+
T Consensus 118 l~~e~~~~f~~~~~~~G~~~ 137 (151)
T 1e5p_A 118 LTPEENEILVQFAHEKKIPV 137 (151)
T ss_dssp CCHHHHHHHHHHHHHTTCCG
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 36889999999999999995
No 414
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=24.81 E-value=1.1e+02 Score=18.00 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=24.6
Q ss_pred CCccchhH-HHHHHHHHhCCCccHHHHHHhcCCChHHHHHH
Q 025599 172 PTELNKDH-NQILELAQAQGFVTVDEVERRLSWTSGRAIDA 211 (250)
Q Consensus 172 p~El~~D~-~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~ 211 (250)
|..++.++ ..++++.. .| .|..++++.+|.+..-....
T Consensus 3 p~~~~~~~~~~i~~l~~-~g-~s~~~ia~~lgvs~~Tv~r~ 41 (52)
T 1jko_C 3 PRAINKHEQEQISRLLE-KG-HPRQQLAIIFGIGVSTLYRY 41 (52)
T ss_dssp CCSSCTTHHHHHHHHHH-TT-CCHHHHHHTTSCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cC-CCHHHHHHHHCCCHHHHHHH
Confidence 44555554 34555544 45 79999999999887655443
No 415
>3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779}
Probab=24.71 E-value=47 Score=29.90 Aligned_cols=80 Identities=13% Similarity=0.115 Sum_probs=51.3
Q ss_pred CCHHHHHHHHhhccccCCCeEEEEEC-CEEEEEecCCccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHH-
Q 025599 138 VSEDDCLRAISKLKVLGNGYEVISVG-KKKLVRSVPTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDIL- 215 (250)
Q Consensus 138 IS~~DI~rAik~L~~LG~g~~vi~ig-~~~~v~svp~El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l- 215 (250)
-+++++.+.++.+.. .||..+++. |. ..+..|-..|-.+-+..|-+.. .+=.|-+|+...|...+..|
T Consensus 142 ~~~e~~~~~a~~~~~--~G~~~iK~Kvg~-------~~~~~d~~~v~avr~~~~~~~l-~vDaN~~~~~~~A~~~~~~L~ 211 (365)
T 3ik4_A 142 GDEVHAAASAKAILA--RGIKSIKVKTAG-------VDVAYDLARLRAIHQAAPTAPL-IVDGNCGYDVERALAFCAACK 211 (365)
T ss_dssp SCHHHHHHHHHHHHH--TTCCCEEEECCS-------SCHHHHHHHHHHHHHHSSSCCE-EEECTTCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--cCCCEEEEEeCC-------CCHHHHHHHHHHHHHhCCCCeE-EEECCCCCCHHHHHHHHHHHh
Confidence 477887777666533 578888874 31 2344555444444443333211 22247799999999999999
Q ss_pred -HHcCCceeecCC
Q 025599 216 -LEEGLAMVDDGH 227 (250)
Q Consensus 216 -~~~Gl~WvD~q~ 227 (250)
..-++.|+.+=.
T Consensus 212 ~~~~~i~~iEeP~ 224 (365)
T 3ik4_A 212 AESIPMVLFEQPL 224 (365)
T ss_dssp HTTCCEEEEECCS
T ss_pred hCCCCceEEECCC
Confidence 777899999654
No 416
>2xns_C RGS14, regulator of G-protein signaling 14; hydrolase-peptide complex, ADP-ribosylation, arginine finger binding, lipoprotein, nucleotide-binding; HET: GDP SRT; 3.41A {Homo sapiens}
Probab=24.71 E-value=66 Score=20.27 Aligned_cols=14 Identities=21% Similarity=0.489 Sum_probs=11.7
Q ss_pred CCCCHHHHHHHHhh
Q 025599 136 EAVSEDDCLRAISK 149 (250)
Q Consensus 136 ~~IS~~DI~rAik~ 149 (250)
..++.+|++||+.-
T Consensus 22 GLL~KEdLv~~l~d 35 (40)
T 2xns_C 22 GLLSNEEVFRALRD 35 (40)
T ss_dssp SSCCHHHHHHHHHH
T ss_pred ccccHHHHHHHhHH
Confidence 48999999999753
No 417
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=24.59 E-value=65 Score=25.69 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=31.5
Q ss_pred CccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 191 FVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 191 ~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
.+|..+|++-+|.++.-.-.+|..|.++|++=++
T Consensus 175 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~ 208 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRVLKRLEAHNILEVS 208 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEec
Confidence 4799999999999999999999999999998665
No 418
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens}
Probab=24.58 E-value=1.8e+02 Score=20.24 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=23.9
Q ss_pred ccCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccc
Q 025599 112 PHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKV 152 (250)
Q Consensus 112 ~~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~ 152 (250)
..+.|.|+..|+...+... | ..+|++++...++.+.+
T Consensus 43 ~d~~G~I~~~el~~~l~~~-g---~~~~~~~~~~l~~~~D~ 79 (107)
T 2d58_A 43 LNGNGDIDIMSLKRMLEKL-G---VPKTHLELKKLIGEVSS 79 (107)
T ss_dssp CCTTSCEEHHHHHHHHHHT-T---CCCCHHHHHHHHHHHCS
T ss_pred CCCCCcCcHHHHHHHHHHh-C---CCCCHHHHHHHHHHhCC
Confidence 3445788888887776654 2 45677777766666543
No 419
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=24.41 E-value=31 Score=23.53 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=14.0
Q ss_pred CCCCHHHHHHHHhhcc
Q 025599 136 EAVSEDDCLRAISKLK 151 (250)
Q Consensus 136 ~~IS~~DI~rAik~L~ 151 (250)
..|+++||..|++.|+
T Consensus 53 kTI~~~Di~~A~~~l~ 68 (68)
T 1b67_A 53 KTIKAEDIELARKMFK 68 (68)
T ss_dssp SEECHHHHHHHGGGGC
T ss_pred CccCHHHHHHHHHhcC
Confidence 4699999999999875
No 420
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=24.31 E-value=89 Score=30.93 Aligned_cols=34 Identities=12% Similarity=0.357 Sum_probs=19.7
Q ss_pred CCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhc
Q 025599 114 NGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKL 150 (250)
Q Consensus 114 nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L 150 (250)
+.|.|+..|.+..+.+... ...+++++..|.+.+
T Consensus 774 ~dG~I~~~EF~~~~~~~~~---~~~~~~~l~~aF~~~ 807 (863)
T 1sjj_A 774 RMGVVTFQAFIDFMSRETA---DTDTADQVMASFKIL 807 (863)
T ss_dssp SCSEEETTHHHHTHHHHST---TCSSSHHHHHHHHGG
T ss_pred CCCcCcHHHHHHHHHHHhc---CCCCHHHHHHHHHHH
Confidence 3477888887776655321 223455666665555
No 421
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=24.30 E-value=89 Score=21.85 Aligned_cols=43 Identities=21% Similarity=0.204 Sum_probs=34.7
Q ss_pred CccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHH
Q 025599 173 TELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217 (250)
Q Consensus 173 ~El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (250)
..|+..+..|+.+. ..| .|..++++.+|.+..-++..+..+.+
T Consensus 28 ~~Lt~~e~~vl~l~-~~g-~s~~eIA~~l~is~~tV~~~l~r~~~ 70 (91)
T 2rnj_A 28 EMLTEREMEILLLI-AKG-YSNQEIASASHITIKTVKTHVSNILS 70 (91)
T ss_dssp GGCCSHHHHHHHHH-HTT-CCTTHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHH-HcC-CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46888898999885 445 59999999999999998888875543
No 422
>2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A
Probab=24.27 E-value=36 Score=30.51 Aligned_cols=77 Identities=19% Similarity=0.347 Sum_probs=49.3
Q ss_pred CCHHHHHHHHhhccccCCCeEEEEEC-CEEEEEecCCccchhHHHHHHHH-HhCCC---ccHHHHHHhcCCChHHHHHHH
Q 025599 138 VSEDDCLRAISKLKVLGNGYEVISVG-KKKLVRSVPTELNKDHNQILELA-QAQGF---VTVDEVERRLSWTSGRAIDAL 212 (250)
Q Consensus 138 IS~~DI~rAik~L~~LG~g~~vi~ig-~~~~v~svp~El~~D~~~vLela-~~~g~---vt~~~L~~~l~W~~~Ra~~~L 212 (250)
.+++++.++++.+.. .||..+++. |. + .+..|-. +++.+ +..|. +.+ -.|-+|+...|...+
T Consensus 145 ~~~e~~~~~a~~~~~--~Gf~~iKik~g~------~-~~~~~~e-~v~avr~a~G~d~~l~v---Dan~~~~~~~a~~~~ 211 (371)
T 2ovl_A 145 LPVADLKTQADRFLA--GGFRAIKMKVGR------P-DLKEDVD-RVSALREHLGDSFPLMV---DANMKWTVDGAIRAA 211 (371)
T ss_dssp SCHHHHHHHHHHHHH--TTCSCEEEECCC------S-SHHHHHH-HHHHHHHHHCTTSCEEE---ECTTCSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--cCCCEEEECCCC------C-CHHHHHH-HHHHHHHHhCCCCeEEE---ECCCCCCHHHHHHHH
Confidence 478888887777654 467777764 32 1 2233332 33332 22222 322 236799999999999
Q ss_pred HHHHHcCCceeecCC
Q 025599 213 DILLEEGLAMVDDGH 227 (250)
Q Consensus 213 ~~l~~~Gl~WvD~q~ 227 (250)
..|...|+.|+.+-.
T Consensus 212 ~~l~~~~i~~iEqP~ 226 (371)
T 2ovl_A 212 RALAPFDLHWIEEPT 226 (371)
T ss_dssp HHHGGGCCSEEECCS
T ss_pred HHHHhcCCCEEECCC
Confidence 999999999998654
No 423
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=24.20 E-value=1.6e+02 Score=23.20 Aligned_cols=50 Identities=12% Similarity=0.114 Sum_probs=39.4
Q ss_pred chhHHHHHHHHHh-CCCccHHHHHHhc-------CCChHHHHHHHHHHHHcCCceeec
Q 025599 176 NKDHNQILELAQA-QGFVTVDEVERRL-------SWTSGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 176 ~~D~~~vLela~~-~g~vt~~~L~~~l-------~W~~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
+.--..||++... .+.+|+++|-+.+ +.+..=.-..|+.|+..|++-.=+
T Consensus 32 T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~ 89 (162)
T 4ets_A 32 TKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSIS 89 (162)
T ss_dssp CHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 4445668887774 6899999997644 578888899999999999997644
No 424
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=24.10 E-value=2.2e+02 Score=21.91 Aligned_cols=35 Identities=9% Similarity=0.111 Sum_probs=23.0
Q ss_pred cCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCe
Q 025599 113 HNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGY 157 (250)
Q Consensus 113 ~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~g~ 157 (250)
.+.|-|+..|.+..+.+. +++.++.+.+-.=|.|+
T Consensus 149 d~dg~i~~~eF~~~~~~~----------~~~~~~F~~~D~d~~G~ 183 (198)
T 1juo_A 149 STNGKITFDDYIACCVKL----------RALTDSFRRRDTAQQGV 183 (198)
T ss_dssp CSSSSEEHHHHHHHHHHH----------HHHHHHHHHTCTTCCSE
T ss_pred CCCCeEcHHHHHHHHHHH----------HHHHHHHHHhCCCCCCe
Confidence 345778888887776653 45666666666655565
No 425
>1cmx_A Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase, deubiquitinating enzyme, cysteine protease, enzyme specificity; 2.25A {Synthetic} SCOP: d.3.1.6
Probab=24.07 E-value=33 Score=29.76 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=18.5
Q ss_pred cccccChhHHHHHHHHHHHcCCCC
Q 025599 55 NDIRKNPTFRSQFHEMCAKVGVDP 78 (250)
Q Consensus 55 ~eI~~dp~fR~~F~~mC~siGVDP 78 (250)
-.|-+||++ |.+|+..+||.|
T Consensus 9 ~plESnP~V---ft~l~~~lGv~~ 29 (235)
T 1cmx_A 9 VPIESNPEV---FTNFAHKLGLKN 29 (235)
T ss_dssp CCEECCHHH---HHHHHHHHTBCT
T ss_pred eeecCCHHH---HHHHHHHcCCCC
Confidence 368899999 999999999954
No 426
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=23.92 E-value=1.6e+02 Score=23.36 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=29.8
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHH
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDI 214 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~ 214 (250)
.|+..+..|+.+.-..| .|..++++.+|.+...++..+..
T Consensus 187 ~L~~~~r~vl~l~~~~g-~s~~EIA~~lgis~~~V~~~~~r 226 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEE-LPAKEVAKILETSVSRVSQLKAK 226 (239)
T ss_dssp TSCHHHHHHHHHHHTSC-CCHHHHHHHTTSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcC-CCHHHHHHHhCCCHHHHHHHHHH
Confidence 46667777777655545 49999999999998877766543
No 427
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=23.67 E-value=60 Score=22.56 Aligned_cols=32 Identities=13% Similarity=0.095 Sum_probs=24.2
Q ss_pred ccHHHHHHhcCCChHHHHHHHHHHHHcCCceeec
Q 025599 192 VTVDEVERRLSWTSGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 192 vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
.++.+|..-.|.+..+|...+...-+ +.|+++
T Consensus 37 ~~~~eL~~i~gise~kA~~ii~aAr~--~~w~~~ 68 (70)
T 1wcn_A 37 QGIDDLADIEGLTDEKAGALIMAARN--ICWFGD 68 (70)
T ss_dssp SCHHHHHTSSSCCHHHHHHHHHHHHH--HHTTCT
T ss_pred CCHHHHHHccCCCHHHHHHHHHHHHH--ccCccc
Confidence 34555556779999999999877765 679865
No 428
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=23.49 E-value=1.4e+02 Score=21.75 Aligned_cols=42 Identities=17% Similarity=0.272 Sum_probs=33.0
Q ss_pred CCccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHH
Q 025599 172 PTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDIL 215 (250)
Q Consensus 172 p~El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l 215 (250)
+..|+..+..|+.+.. .| .|..++++.+|.+..-++..+..+
T Consensus 32 ~~~Lt~re~~Vl~l~~-~G-~s~~EIA~~L~iS~~TV~~~l~ri 73 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFA-EG-FLVTEIAKKLNRSIKTISSQKKSA 73 (99)
T ss_dssp SSSCCHHHHHHHHHHH-HT-CCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH-cC-CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4578999999998865 34 489999999999988777766643
No 429
>2i5g_A Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, structural genomics, protein structure initiative; 2.60A {Pseudomonas aeruginosa}
Probab=23.44 E-value=20 Score=32.33 Aligned_cols=167 Identities=16% Similarity=0.259 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc---ccccChhHHHHHH--HHHHHcCCC---CCCCCCcccccccccccchhhhHHHHH
Q 025599 33 DLMKEQLATFRSQLEDFARKHKN---DIRKNPTFRSQFH--EMCAKVGVD---PLASNKGFWAELLGIGDFYYELGVQIV 104 (250)
Q Consensus 33 ~~l~~qL~~F~~~L~~Fa~~h~~---eI~~dp~fR~~F~--~mC~siGVD---PL~s~k~~ws~~lG~gdfy~eLavqIv 104 (250)
.+.-.|++.|+..++. |.+ -+++-.++++.++ +++.-+||. |+..+ ++.=+.||+|+|+.+
T Consensus 48 ~~~l~~i~~~~~~~~~----~~~~~~~~~s~~di~~a~~~gkia~~l~iEg~~~i~~~-------l~~l~~~y~lGvR~~ 116 (325)
T 2i5g_A 48 QATVNNITASNKLIRD----NSDLVIPVRSTADIRKAKEQGKTGILYGFQNAHAFEDQ-------IGYVEVFKQLGVGIV 116 (325)
T ss_dssp HHHHHHHHHHHHHHHH----TTTTEEECSSHHHHHHHHHTTCEEEEEEESCGGGGTTC-------THHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHHh----CCCcEEeeCCHHHHHHHHhcCCeEEEEEEechhhhCCC-------HHHHHHHHHcCCeEE
Confidence 3344566666655543 433 2333345665554 233334443 33211 112377888888887
Q ss_pred HHhhh--------hcccCCCceeHH-HHHHHHHhhcCCC--CCCCCHHHHHHHHhhccccCCCeEEEEECCEEEEEecCC
Q 025599 105 EICLA--------TRPHNGGLINLQ-ELCNLLRQRRKSN--REAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPT 173 (250)
Q Consensus 105 evC~~--------tr~~nGGli~l~-el~~~v~k~R~~~--~~~IS~~DI~rAik~L~~LG~g~~vi~ig~~~~v~svp~ 173 (250)
-.|-. ..+.+|||-++- +++...|+. |.. ..-+|+.-...+++.-+ .++ |++=.+..-+...|.
T Consensus 117 ~Lt~n~~N~~~~g~~~~~~GLT~~G~~vV~emnrl-GmivDlSH~s~~~~~dvl~~s~---~Pv-i~SHsn~~al~~h~R 191 (325)
T 2i5g_A 117 QMCYNTQNLVGTGCYERDGGLSGFGREIVAEMNRV-GIMCDLSHVGSKTSEEVILESK---KPV-CYSHCLPSGLKEHPR 191 (325)
T ss_dssp ESCCSSBCSSCBBTTSCCCCCCHHHHHHHHHHHHH-TCEEECTTBCHHHHHHHHHHCS---SCC-EEEEECBTTTCCCTT
T ss_pred EeeccCCCCCCCCCCCCCCCCCHHHHHHHHHHHHc-CcEEEcCcCCHHHHHHHHHHhC---CCE-EEeCCCccccCCCCC
Confidence 66531 111678999884 899999886 421 13467888877777654 344 222223323444588
Q ss_pred ccchhHHHHHHHHHhCCCcc----HHHHHHhcCCChHHHHHHHHHHHH
Q 025599 174 ELNKDHNQILELAQAQGFVT----VDEVERRLSWTSGRAIDALDILLE 217 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt----~~~L~~~l~W~~~Ra~~~L~~l~~ 217 (250)
.++.|+ +-.+++.+|.|- ...+...-.|+.......++.+++
T Consensus 192 Nl~De~--irala~~GGvigv~~~~~fl~~~~~~t~~~~~~hi~~i~~ 237 (325)
T 2i5g_A 192 NKSDEE--LKFIADHGGFVGVTMFAPFLKKGIDSTIDDYAEAIEYVMN 237 (325)
T ss_dssp SBCHHH--HHHHHHTTCEEEECCCGGGSSSGGGCBHHHHHHHHHHHHH
T ss_pred CCCHHH--HHHHHHcCCeEEEeecchhcCCCCCCCHHHHHHHHHHHHH
Confidence 999888 666677766542 122222336777777777776654
No 430
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=23.37 E-value=1.8e+02 Score=25.72 Aligned_cols=65 Identities=18% Similarity=0.327 Sum_probs=46.2
Q ss_pred HHHHHHhhhhcccCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEECC-EEEEEecCCccchhH
Q 025599 101 VQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGK-KKLVRSVPTELNKDH 179 (250)
Q Consensus 101 vqIvevC~~tr~~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~g~~vi~ig~-~~~v~svp~El~~D~ 179 (250)
.+|+++.. ...|..++-.+|-..+. ||..-|-++|+.|+. .||.+..+.+ -+.+...|.-|+.+.
T Consensus 6 ~~iL~~L~---~~~g~~~Sg~eLa~~lg---------vSr~aV~k~i~~L~~--~G~~i~~~~~~GY~L~~~~~~l~~~~ 71 (323)
T 3rkx_A 6 QDVLQLLY---KNKPNYISGQSIAESLN---------ISRTAVKKVIDQLKL--EGCKIDSVNHKGHLLQQLPDIWYQGI 71 (323)
T ss_dssp HHHHHHHH---HHTTSCBCHHHHHHHHT---------SCHHHHHHHHHHHHH--TTCEEEEETTTEEEEEECCSSCCHHH
T ss_pred HHHHHHHH---hCCCCccCHHHHHHHHC---------CCHHHHHHHHHHHHh--cCCeEEEeCCCeEEEecCcccCCHHH
Confidence 35566553 23356788888876664 899999999999997 4577777754 455666677788665
No 431
>4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii}
Probab=23.31 E-value=24 Score=32.37 Aligned_cols=84 Identities=13% Similarity=0.094 Sum_probs=50.2
Q ss_pred CHHHHHHHHhhccccCCCeEEEEEC-CEEEEE---ecC--CccchhHHHHHHHHHhCC---CccHHHHHHhcCCChHHHH
Q 025599 139 SEDDCLRAISKLKVLGNGYEVISVG-KKKLVR---SVP--TELNKDHNQILELAQAQG---FVTVDEVERRLSWTSGRAI 209 (250)
Q Consensus 139 S~~DI~rAik~L~~LG~g~~vi~ig-~~~~v~---svp--~El~~D~~~vLela~~~g---~vt~~~L~~~l~W~~~Ra~ 209 (250)
+++++.+.++.... .||+.+++. +..+-. ..| .++..|-..+-.+-+..| -+.++ .|-+|+...|.
T Consensus 151 ~~e~~~~~a~~~~~--~G~~~~KlK~g~~~~~~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~vD---an~~~~~~~A~ 225 (404)
T 4e5t_A 151 DADMAAEAAAKAVD--QGFTAVKFDPAGAYTIYDGHQPSLEDLERSEAFCKQIRAAVGTKADLLFG---THGQFTVSGAK 225 (404)
T ss_dssp CHHHHHHHHHHHHH--HTCSEEEECCSCCCBTTCSBCCCHHHHHHHHHHHHHHHHHHGGGSEEEEC---CCSCBCHHHHH
T ss_pred CHHHHHHHHHHHHH--cCCCEEeeCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCCeEEEe---CCCCcCHHHHH
Confidence 78888887776543 479998884 310000 000 013333333333322222 23332 47899999999
Q ss_pred HHHHHHHHcCCceeecCC
Q 025599 210 DALDILLEEGLAMVDDGH 227 (250)
Q Consensus 210 ~~L~~l~~~Gl~WvD~q~ 227 (250)
..+..|...|+.|+.+-.
T Consensus 226 ~~~~~l~~~~i~~iEeP~ 243 (404)
T 4e5t_A 226 RLARRLEAYDPLWFEEPI 243 (404)
T ss_dssp HHHHHHGGGCCSEEECCS
T ss_pred HHHHHHhhcCCcEEECCC
Confidence 999999999999998654
No 432
>3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans}
Probab=23.26 E-value=34 Score=30.86 Aligned_cols=77 Identities=12% Similarity=0.055 Sum_probs=47.1
Q ss_pred CHHHHHHHHhhccccCCCeEEEEEC-CEEEEEecCCccchhHHHHHHHHHhCC---CccHHHHHHhcCCChHHHHHHHHH
Q 025599 139 SEDDCLRAISKLKVLGNGYEVISVG-KKKLVRSVPTELNKDHNQILELAQAQG---FVTVDEVERRLSWTSGRAIDALDI 214 (250)
Q Consensus 139 S~~DI~rAik~L~~LG~g~~vi~ig-~~~~v~svp~El~~D~~~vLela~~~g---~vt~~~L~~~l~W~~~Ra~~~L~~ 214 (250)
++++....++.+ +..||..+++. |. ..+..|-..+-.+-+..| -+.++ .|-+|+...|...+..
T Consensus 146 ~~~~~~~~a~~~--~~~G~~~~K~Kvg~-------~~~~~d~~~v~avR~~~g~~~~l~vD---an~~~~~~~A~~~~~~ 213 (377)
T 3my9_A 146 DFDADLERMRAM--VPAGHTVFKMKTGV-------KPHAEELRILETMRGEFGERIDLRLD---FNQALTPFGAMKILRD 213 (377)
T ss_dssp SHHHHHHHHHHH--TTTTCCEEEEECSS-------SCHHHHHHHHHHHHHHHGGGSEEEEE---CTTCCCTTTHHHHHHH
T ss_pred CHHHHHHHHHHH--HHcCCCEEEEccCC-------CcHHHHHHHHHHHHHHhCCCCeEEEe---CCCCcCHHHHHHHHHH
Confidence 556555444433 33489998874 31 223344433333322222 23332 4789999999999999
Q ss_pred HHHcCCceeecCC
Q 025599 215 LLEEGLAMVDDGH 227 (250)
Q Consensus 215 l~~~Gl~WvD~q~ 227 (250)
|...|+.|+.+-.
T Consensus 214 l~~~~i~~iEqP~ 226 (377)
T 3my9_A 214 VDAFRPTFIEQPV 226 (377)
T ss_dssp HHTTCCSCEECCS
T ss_pred HhhcCCCEEECCC
Confidence 9999999998644
No 433
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=23.09 E-value=75 Score=25.25 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=30.5
Q ss_pred ccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 192 VTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 192 vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
+|..+|++-+|-++.-.-.+|..|.++|++=++
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~~ 196 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTALNSLIKEGYISRQ 196 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEEC
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEEc
Confidence 799999999999999999999999999997554
No 434
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=22.94 E-value=2.6e+02 Score=21.47 Aligned_cols=35 Identities=9% Similarity=0.003 Sum_probs=22.8
Q ss_pred CCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeE
Q 025599 114 NGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYE 158 (250)
Q Consensus 114 nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~g~~ 158 (250)
+.|.|+..|.+..+.+. +.+.++.+.+-.=|.|+-
T Consensus 142 ~dg~i~~~eF~~~~~~~----------~~~~~~F~~~D~d~dG~i 176 (191)
T 1y1x_A 142 RRGSLGFDDYVELSIFV----------CRVRNVFAFYDRERTGQV 176 (191)
T ss_dssp CSSSBCHHHHHHHHHHH----------HHHHHHHHHHCTTCCSEE
T ss_pred CCCeEeHHHHHHHHHHH----------HHHHHHHHHhCcCCCceE
Confidence 34778888887776642 456666666666666653
No 435
>3ihr_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; center for eukaryotic structural genomics, UCH37, UCH-L5, UB hydrolase, proteasome, INO80; 2.95A {Homo sapiens}
Probab=22.91 E-value=34 Score=31.14 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=19.0
Q ss_pred ccccChhHHHHHHHHHHHcCCCCC
Q 025599 56 DIRKNPTFRSQFHEMCAKVGVDPL 79 (250)
Q Consensus 56 eI~~dp~fR~~F~~mC~siGVDPL 79 (250)
.|-+||++ |.+++..+||.++
T Consensus 10 pLESnP~V---ft~ll~~LGv~~~ 30 (328)
T 3ihr_A 10 LMESDPGV---FTELIKGFGCRGA 30 (328)
T ss_dssp CCCCCHHH---HHHHHHHHTCBSE
T ss_pred eecCCHHH---HHHHHHHcCCCce
Confidence 57899999 9999999999875
No 436
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=22.89 E-value=1e+02 Score=26.60 Aligned_cols=47 Identities=11% Similarity=0.209 Sum_probs=35.4
Q ss_pred CCHHHHHHHHhhccccCCCeEEEEECCEEEEEecCCccchhHHHHHHHHHh
Q 025599 138 VSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQA 188 (250)
Q Consensus 138 IS~~DI~rAik~L~~LG~g~~vi~ig~~~~v~svp~El~~D~~~vLela~~ 188 (250)
.|.++++++++.++....|+.+. ..+|.-.|.|=..|....++++..
T Consensus 136 ~t~e~~~~~i~~l~~~~~gi~i~----~~~IvG~PgEt~ed~~~t~~~l~~ 182 (304)
T 2qgq_A 136 KSSEELKKMLSSIRERFPDAVLR----TSIIVGFPGETEEDFEELKQFVEE 182 (304)
T ss_dssp SCHHHHHHHHHHHHHHCTTCEEE----EEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCEEE----EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 58899999999998765566432 235555698888888888888775
No 437
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=22.78 E-value=48 Score=24.01 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHcCCCCCCC
Q 025599 62 TFRSQFHEMCAKVGVDPLAS 81 (250)
Q Consensus 62 ~fR~~F~~mC~siGVDPL~s 81 (250)
+-.+.|++|+...||+|.++
T Consensus 18 ea~~~Fk~LL~e~~V~p~~t 37 (82)
T 2dod_A 18 ARMKQFKDMLLERGVSAFST 37 (82)
T ss_dssp HHHHHHHHHHHHTTCCSSSC
T ss_pred HHHHHHHHHHHHcCcCCCCC
Confidence 34568999999999999764
No 438
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=22.70 E-value=2e+02 Score=21.25 Aligned_cols=39 Identities=15% Similarity=0.293 Sum_probs=29.2
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHH
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALD 213 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~ 213 (250)
.|+..+..|+.+.-..|+ |..++++.+|.+..-++..+.
T Consensus 25 ~L~~~~r~vl~l~~~~g~-s~~EIA~~lgiS~~tV~~~l~ 63 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-SLSEIADTFNVSRQAVYDNIR 63 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-CHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-CHHHHHHHHCcCHHHHHHHHH
Confidence 456777788887766555 999999999999766655444
No 439
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=22.68 E-value=1.7e+02 Score=19.12 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=25.0
Q ss_pred cCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCC
Q 025599 113 HNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNG 156 (250)
Q Consensus 113 ~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~g 156 (250)
.+.|.|+..|+...+... | ..+|++++...++.+..=+.|
T Consensus 26 d~~G~i~~~el~~~l~~~-g---~~~~~~~~~~~~~~~d~~~~g 65 (85)
T 2ktg_A 26 DNDNKLTAEELGTVMRAL-G---ANPTKQKISEIVKDYDKDNSG 65 (85)
T ss_dssp TCCSEEEHHHHHHHHHTT-S---SCCCHHHHHHHHHHHSSSSCS
T ss_pred CCCCcCcHHHHHHHHHHh-C---CCCCHHHHHHHHHHhCCCCCC
Confidence 334788888887776653 2 456777777766665443333
No 440
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=22.68 E-value=1.6e+02 Score=18.91 Aligned_cols=31 Identities=32% Similarity=0.517 Sum_probs=15.5
Q ss_pred CCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhc
Q 025599 115 GGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKL 150 (250)
Q Consensus 115 GGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L 150 (250)
.|.|+..|+...+.... .++++++...++.+
T Consensus 17 ~G~i~~~el~~~l~~~g-----~~~~~~~~~~~~~~ 47 (78)
T 1k9u_A 17 DGKISLSELTDALRTLG-----STSADEVQRMMAEI 47 (78)
T ss_dssp SSEECHHHHHHHHHHHH-----TCCHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHhC-----CCCHHHHHHHHHHh
Confidence 35666666655554431 34555555444443
No 441
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=22.41 E-value=2.6e+02 Score=21.21 Aligned_cols=30 Identities=3% Similarity=0.094 Sum_probs=21.8
Q ss_pred CCCccHHHHHHhcC---CChHHHHHHHHHHHHc
Q 025599 189 QGFVTVDEVERRLS---WTSGRAIDALDILLEE 218 (250)
Q Consensus 189 ~g~vt~~~L~~~l~---W~~~Ra~~~L~~l~~~ 218 (250)
.|+||.++|..-+. .+...+...+..+-.+
T Consensus 122 ~G~I~~~El~~~l~~~~~~~~~~~~~~~~~d~~ 154 (180)
T 3mse_B 122 DGYISKSDIVSLVHDKVLDNNDIDNFFLSVHSI 154 (180)
T ss_dssp SSCBCHHHHHHHTTTSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHcCCCCCHHHHHHHHHHhhhc
Confidence 69999999998774 6666666666655443
No 442
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=22.24 E-value=75 Score=25.20 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=30.7
Q ss_pred ccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 192 VTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 192 vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
+|.++|++-+|-++.-.-.+|..|.++|++=++
T Consensus 178 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 210 (227)
T 3d0s_A 178 LTQEEIAQLVGASRETVNKALADFAHRGWIRLE 210 (227)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEec
Confidence 799999999999999999999999999997654
No 443
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A
Probab=22.21 E-value=2.7e+02 Score=21.61 Aligned_cols=36 Identities=14% Similarity=0.504 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhcccccccChhHHHHHHHHHHHcCCCCC
Q 025599 38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL 79 (250)
Q Consensus 38 qL~~F~~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVDPL 79 (250)
++..++.....|-.++.+.|..++ | +.+ .++|.+|.
T Consensus 27 ~~~~l~~~F~~~D~d~dG~Is~~E-l----~~~-~~lg~~~~ 62 (208)
T 2ct9_A 27 QITRLYSRFTSLDKGENGTLSRED-F----QRI-PELAINPL 62 (208)
T ss_dssp HHHHHHHHHHHHCTTCSSEECTGG-G----GGC-HHHHTSTT
T ss_pred HHHHHHHHHHHHCCCCCCcCcHHH-H----HHH-HHcCCCCc
Confidence 344555566667677777777653 3 332 36777774
No 444
>3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A
Probab=22.07 E-value=38 Score=31.28 Aligned_cols=29 Identities=17% Similarity=-0.086 Sum_probs=25.7
Q ss_pred HhcCCChHHHHHHHHHHHHcCCceeecCC
Q 025599 199 RRLSWTSGRAIDALDILLEEGLAMVDDGH 227 (250)
Q Consensus 199 ~~l~W~~~Ra~~~L~~l~~~Gl~WvD~q~ 227 (250)
.|-+|+...|...+..|...|+.|+.+-.
T Consensus 234 aN~~~~~~~A~~~~~~L~~~~i~~iEqP~ 262 (425)
T 3vcn_A 234 VHHRLTPIEAARLGKDLEPYRLFWLEDSV 262 (425)
T ss_dssp CTTCCCHHHHHHHHHHHGGGCCSEEECCS
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEECCC
Confidence 47799999999999999999999998654
No 445
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=21.98 E-value=1.7e+02 Score=19.11 Aligned_cols=36 Identities=25% Similarity=0.404 Sum_probs=22.3
Q ss_pred CCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccC
Q 025599 114 NGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLG 154 (250)
Q Consensus 114 nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG 154 (250)
+.|.|+..|+...+... . .+|++++...++.+.+=|
T Consensus 24 ~~G~i~~~el~~~l~~~----g-~~~~~~~~~~~~~~D~~~ 59 (86)
T 2opo_A 24 GDGKISSSELGDALKTL----G-SVTPDEVRRMMAEIDTDG 59 (86)
T ss_dssp CSSEEEHHHHHHHHHTT----T-TCCHHHHHHHHHHHCTTC
T ss_pred CCCCcCHHHHHHHHHHc----C-CCCHHHHHHHHHHhCCCC
Confidence 34777777777766653 2 467777666666654433
No 446
>3sao_A Extracellular fatty acid-binding protein; beta-barrel, siderophore binding protein, transport protein; HET: NKN DBH; 1.80A {Gallus gallus} SCOP: b.60.1.1 PDB: 1jzu_A 2kt4_B* 2lbv_A*
Probab=21.93 E-value=45 Score=25.85 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=18.3
Q ss_pred ccChhHHHHHHHHHHHcCCCC
Q 025599 58 RKNPTFRSQFHEMCAKVGVDP 78 (250)
Q Consensus 58 ~~dp~fR~~F~~mC~siGVDP 78 (250)
.-+|+...+|+++|.++|+|+
T Consensus 119 ~~~~e~~~~f~~~~~~~G~~~ 139 (160)
T 3sao_A 119 EVSPTAMAIFRKLARERNYTD 139 (160)
T ss_dssp SCCHHHHHHHHHHHHTTTCCG
T ss_pred CCCHHHHHHHHHHHHHcCCCH
Confidence 347788999999999999985
No 447
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens}
Probab=21.81 E-value=2e+02 Score=22.60 Aligned_cols=51 Identities=14% Similarity=0.315 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHhhccccCCCeEEEEECCEEEEEecCCccchhH--HHHHHHHH--hCCCccHHHHHHhcC
Q 025599 136 EAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDH--NQILELAQ--AQGFVTVDEVERRLS 202 (250)
Q Consensus 136 ~~IS~~DI~rAik~L~~LG~g~~vi~ig~~~~v~svp~El~~D~--~~vLela~--~~g~vt~~~L~~~l~ 202 (250)
..||.+++.+++..+..++. +..++.+. ..++..+. ..|.||.+++...+.
T Consensus 108 G~I~~~E~~~~l~~~~~~~~----------------~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~ 162 (211)
T 2ggz_A 108 GSIDKNELLDMFMAVQALNG----------------QQTLSPEEFINLVFHKIDINNDGELTLEEFINGMA 162 (211)
T ss_dssp SSBCHHHHHHHHHHHTTSSC----------------CCSCTHHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHHHhhcC----------------CccccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 45777777777666543321 02233222 22334333 369999999986553
No 448
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=21.81 E-value=1.4e+02 Score=22.89 Aligned_cols=48 Identities=10% Similarity=0.090 Sum_probs=37.4
Q ss_pred HHHHHHHhhhhcccCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCC
Q 025599 100 GVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGN 155 (250)
Q Consensus 100 avqIvevC~~tr~~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~ 155 (250)
-..|+++... +++-++..||+..+.+. ...||..=|.|.++.|...|-
T Consensus 24 R~~Il~~L~~----~~~~~sa~ei~~~l~~~----~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 24 RHAILEYLVN----SMAHPTADDIYKALEGK----FPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHHHHHH----CSSCCCHHHHHHHHGGG----CTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHh----CCCCCCHHHHHHHHHHh----CCCCChhhHHHHHHHHHHCCC
Confidence 4567777664 35678999999999764 256999999999999987663
No 449
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}
Probab=21.74 E-value=32 Score=30.96 Aligned_cols=74 Identities=11% Similarity=0.191 Sum_probs=47.6
Q ss_pred CCHHHHHHHHhhccccCCCeEEEEEC-CEEEEEecCCccchhHHHHHHHHH-hCCC---ccHHHHHHhcCCChHHHHHHH
Q 025599 138 VSEDDCLRAISKLKVLGNGYEVISVG-KKKLVRSVPTELNKDHNQILELAQ-AQGF---VTVDEVERRLSWTSGRAIDAL 212 (250)
Q Consensus 138 IS~~DI~rAik~L~~LG~g~~vi~ig-~~~~v~svp~El~~D~~~vLela~-~~g~---vt~~~L~~~l~W~~~Ra~~~L 212 (250)
-+++++.++++.+.. .||..+++. +. .+..|- .+++.+. ..|. +.+ -.|-+|+...|.+.+
T Consensus 144 ~~~~~~~~~a~~~~~--~Gf~~iKik~g~--------~~~~~~-e~v~avr~a~g~d~~l~v---Dan~~~~~~~a~~~~ 209 (379)
T 2rdx_A 144 RSEAETRAELARHRA--AGYRQFQIKVGA--------DWQSDI-DRIRACLPLLEPGEKAMA---DANQGWRVDNAIRLA 209 (379)
T ss_dssp SCSHHHHHHHHHHHH--TTCCEEEEECCS--------CHHHHH-HHHHHHGGGSCTTCEEEE---ECTTCSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--cCCCEEEEeccC--------CHHHHH-HHHHHHHHhcCCCCEEEE---ECCCCCCHHHHHHHH
Confidence 367888777776654 368888874 32 222222 3333333 2332 332 247799999999999
Q ss_pred HHHHHcCCceeecC
Q 025599 213 DILLEEGLAMVDDG 226 (250)
Q Consensus 213 ~~l~~~Gl~WvD~q 226 (250)
..|...|+ |+.+-
T Consensus 210 ~~l~~~~i-~iE~P 222 (379)
T 2rdx_A 210 RATRDLDY-ILEQP 222 (379)
T ss_dssp HHTTTSCC-EEECC
T ss_pred HHHHhCCe-EEeCC
Confidence 99999999 99743
No 450
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=21.69 E-value=1.8e+02 Score=21.56 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=30.2
Q ss_pred ccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHH
Q 025599 174 ELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDI 214 (250)
Q Consensus 174 El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~ 214 (250)
.|+..+..++.+.-..|+ |..++++.+|.+..-++..+..
T Consensus 22 ~L~~~~r~vl~l~y~~g~-s~~EIA~~lgiS~~tV~~~l~r 61 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-SLAEIADEFGVSRQAVYDNIKR 61 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-CHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-CHHHHHHHHCcCHHHHHHHHHH
Confidence 467778888887766565 9999999999987766655543
No 451
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=21.66 E-value=98 Score=24.01 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=31.4
Q ss_pred CccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 191 FVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 191 ~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
.+|.++|++-+|-++.-.-.+|..|.++|++=++
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~ 200 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLISAH 200 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEeC
Confidence 4799999999999999999999999999998765
No 452
>1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A
Probab=21.60 E-value=46 Score=29.64 Aligned_cols=77 Identities=17% Similarity=0.371 Sum_probs=48.2
Q ss_pred CHHHHHHHHhhccccCCCeEEEEEC-CEEEEEecCCccchhHHHHHHHHHhCCC---ccHHHHHHhcCCChHHHHHHHHH
Q 025599 139 SEDDCLRAISKLKVLGNGYEVISVG-KKKLVRSVPTELNKDHNQILELAQAQGF---VTVDEVERRLSWTSGRAIDALDI 214 (250)
Q Consensus 139 S~~DI~rAik~L~~LG~g~~vi~ig-~~~~v~svp~El~~D~~~vLela~~~g~---vt~~~L~~~l~W~~~Ra~~~L~~ 214 (250)
+++++.++++.+.. .||..+++. |. + .+..|-..+-.+-+..|. +.++ .|-+|+...|...+..
T Consensus 140 ~~~~~~~~a~~~~~--~Gf~~iKik~g~------~-~~~~d~~~v~avr~a~g~~~~l~vD---an~~~~~~~a~~~~~~ 207 (366)
T 1tkk_A 140 SPEEMAADAENYLK--QGFQTLKIKVGK------D-DIATDIARIQEIRKRVGSAVKLRLD---ANQGWRPKEAVTAIRK 207 (366)
T ss_dssp CHHHHHHHHHHHHH--HTCCEEEEECCS------S-CHHHHHHHHHHHHHHHCSSSEEEEE---CTTCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--cCCCeEEEEeCC------C-CHHHHHHHHHHHHHHhCCCCeEEEE---CCCCCCHHHHHHHHHH
Confidence 67777766665543 368888874 21 1 233333333333332222 3222 3679999999999999
Q ss_pred HHH--cCCceeecCC
Q 025599 215 LLE--EGLAMVDDGH 227 (250)
Q Consensus 215 l~~--~Gl~WvD~q~ 227 (250)
|.. .|+.|+.+-.
T Consensus 208 l~~~~~~i~~iEqP~ 222 (366)
T 1tkk_A 208 MEDAGLGIELVEQPV 222 (366)
T ss_dssp HHHTTCCEEEEECCS
T ss_pred HhhcCCCceEEECCC
Confidence 998 8999998544
No 453
>2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase, PSI, protein structure initiative; 1.42A {Synechococcus elongatus} PDB: 3h7v_A
Probab=21.56 E-value=41 Score=29.81 Aligned_cols=80 Identities=13% Similarity=0.080 Sum_probs=48.6
Q ss_pred CHHHHHHHHhhccccCCCeEEEEEC-CEEEEEecCCccchhHHHHHHHHHhCCC-ccHHHHHHhcCCChHHHHHHHHHHH
Q 025599 139 SEDDCLRAISKLKVLGNGYEVISVG-KKKLVRSVPTELNKDHNQILELAQAQGF-VTVDEVERRLSWTSGRAIDALDILL 216 (250)
Q Consensus 139 S~~DI~rAik~L~~LG~g~~vi~ig-~~~~v~svp~El~~D~~~vLela~~~g~-vt~~~L~~~l~W~~~Ra~~~L~~l~ 216 (250)
+++++...++.+. ..||+.+++. | +..+..|-..+-.+-+..|. +.. .+=.|-+|+...|...+..|.
T Consensus 116 ~~e~~~~~a~~~~--~~G~~~~KiKvg-------~~~~~~d~~~v~avr~~~g~~~~L-~vDaN~~~~~~~A~~~~~~l~ 185 (332)
T 2ozt_A 116 SGQAALEQWQQSW--QRGQTTFKWKVG-------VMSPEEEQAILKALLAALPPGAKL-RLDANGSWDRATANRWFAWLD 185 (332)
T ss_dssp TGGGHHHHHHHHH--HTTCCEEEEECS-------SSCHHHHHHHHHHHHHHSCTTCEE-EEECTTCCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH--HcCCcEEEEEeC-------CCChHHHHHHHHHHHHHcCCCCEE-EEcccCCCCHHHHHHHHHHHH
Confidence 5666655555443 3578888863 2 22344444444444443332 110 112477899999999999998
Q ss_pred Hc---CCceeecCCC
Q 025599 217 EE---GLAMVDDGHR 228 (250)
Q Consensus 217 ~~---Gl~WvD~q~~ 228 (250)
.- ++.|+.+=.+
T Consensus 186 ~~~~~~i~~iEqP~~ 200 (332)
T 2ozt_A 186 RHGNGKIEYVEQPLP 200 (332)
T ss_dssp HHCCTTEEEEECCSC
T ss_pred hhccCCcceeECCCC
Confidence 88 9999986553
No 454
>1bj7_A D 2; allergen, lipocalin; 1.80A {Bos taurus} SCOP: b.60.1.1
Probab=21.29 E-value=50 Score=25.31 Aligned_cols=20 Identities=15% Similarity=0.301 Sum_probs=18.0
Q ss_pred cChhHHHHHHHHHHHcCCCC
Q 025599 59 KNPTFRSQFHEMCAKVGVDP 78 (250)
Q Consensus 59 ~dp~fR~~F~~mC~siGVDP 78 (250)
-+|+...+|++.|.+.|+|+
T Consensus 123 l~~e~~~~f~~~~~~~G~~~ 142 (156)
T 1bj7_A 123 FTPEELEKYQQLNSERGVPN 142 (156)
T ss_dssp CCHHHHHHHHHHHHHHTCCG
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 47889999999999999995
No 455
>1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A
Probab=21.19 E-value=51 Score=29.60 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=48.8
Q ss_pred HHHHHHHHhhccccCCCeEEEEEC-CEEEEEecCCccchhHHHHHHHHHhCCC---ccHHHHHHhcCCChHHHHHHHHHH
Q 025599 140 EDDCLRAISKLKVLGNGYEVISVG-KKKLVRSVPTELNKDHNQILELAQAQGF---VTVDEVERRLSWTSGRAIDALDIL 215 (250)
Q Consensus 140 ~~DI~rAik~L~~LG~g~~vi~ig-~~~~v~svp~El~~D~~~vLela~~~g~---vt~~~L~~~l~W~~~Ra~~~L~~l 215 (250)
++++.++.+.++. .||..+++. |. ..+..|-..+-.+-+..|. +.++ .|-+|+...|...+..|
T Consensus 144 ~~~~~~~~~~~~~--~G~~~~KiKvg~-------~~~~~d~~~v~avR~~~g~~~~l~vD---an~~~~~~~a~~~~~~l 211 (370)
T 1chr_A 144 KRDLDSAVEMIER--RRHNRFKVKLGF-------RSPQDDLIHMEALSNSLGSKAYLRVD---VNQAWDEQVASVYIPEL 211 (370)
T ss_dssp HHHHHHHHHHHHT--TCCCEEEEECSS-------SCSHHHHHHHHHHHHHSSTTCCEEEE---CTTCCCTTHHHHHTHHH
T ss_pred HHHHHHHHHHHHH--CCCCEEEEecCC-------CCHHHHHHHHHHHHHhcCCCCEEEEE---CCCCCCHHHHHHHHHHH
Confidence 4556666666543 478888763 21 1234444444333333332 4433 48899999999999999
Q ss_pred HHcCCceeecCC
Q 025599 216 LEEGLAMVDDGH 227 (250)
Q Consensus 216 ~~~Gl~WvD~q~ 227 (250)
...|+.|+.+-.
T Consensus 212 ~~~~i~~iEqP~ 223 (370)
T 1chr_A 212 EALGVELIEQPV 223 (370)
T ss_dssp HTTTEEEEECCS
T ss_pred HhcCCCEEECCC
Confidence 999999998654
No 456
>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*
Probab=21.11 E-value=40 Score=30.38 Aligned_cols=77 Identities=9% Similarity=0.148 Sum_probs=50.3
Q ss_pred CHHHHHHHHhhccccCC-CeEEEEEC-CEEEEEecCCccchhHHHHHHHHHhCCC---ccHHHHHHhcCCChHHHHHHHH
Q 025599 139 SEDDCLRAISKLKVLGN-GYEVISVG-KKKLVRSVPTELNKDHNQILELAQAQGF---VTVDEVERRLSWTSGRAIDALD 213 (250)
Q Consensus 139 S~~DI~rAik~L~~LG~-g~~vi~ig-~~~~v~svp~El~~D~~~vLela~~~g~---vt~~~L~~~l~W~~~Ra~~~L~ 213 (250)
+++++...++.... . ||..+++. |. | ....|-..+-.+-+..|. +.++ .|-+|+...|...+.
T Consensus 151 ~~~~~~~~a~~~~~--~~G~~~~K~Kvg~------~-~~~~d~~~v~avR~~~g~~~~l~vD---an~~~~~~~a~~~~~ 218 (372)
T 3tj4_A 151 TLEDLLAGSARAVE--EDGFTRLKIKVGH------D-DPNIDIARLTAVRERVDSAVRIAID---GNGKWDLPTCQRFCA 218 (372)
T ss_dssp CHHHHHHHHHHHHH--TTCCCEEEEECCC------S-SHHHHHHHHHHHHHHSCTTCEEEEE---CTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--ccCCCEEEEcCCC------C-CHHHHHHHHHHHHHHcCCCCcEEee---CCCCCCHHHHHHHHH
Confidence 78888777665533 4 68888874 32 1 234444433333333332 3332 478999999999999
Q ss_pred HHHHcCCceeecCC
Q 025599 214 ILLEEGLAMVDDGH 227 (250)
Q Consensus 214 ~l~~~Gl~WvD~q~ 227 (250)
.|..-|+.|+.+-.
T Consensus 219 ~l~~~~i~~iEqP~ 232 (372)
T 3tj4_A 219 AAKDLDIYWFEEPL 232 (372)
T ss_dssp HTTTSCEEEEESCS
T ss_pred HHhhcCCCEEECCC
Confidence 99999999998644
No 457
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=20.91 E-value=83 Score=25.29 Aligned_cols=34 Identities=26% Similarity=0.286 Sum_probs=31.1
Q ss_pred CccHHHHHHhcCCChHHHHHHHHHHHHcCCceee
Q 025599 191 FVTVDEVERRLSWTSGRAIDALDILLEEGLAMVD 224 (250)
Q Consensus 191 ~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD 224 (250)
.+|.++|++-+|-+++-.-.+|..|.++|++=++
T Consensus 186 ~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~~~ 219 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNISKTLNELQDNGLIELH 219 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEE
T ss_pred cCCHHHHHHHhCCChhHHHHHHHHHHHCCCEEec
Confidence 3799999999999999999999999999998665
No 458
>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A*
Probab=20.86 E-value=1.6e+02 Score=25.14 Aligned_cols=47 Identities=17% Similarity=0.383 Sum_probs=35.8
Q ss_pred HHHHHHHhhcHh-------HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCh
Q 025599 15 VARDQYRLLGEN-------VAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNP 61 (250)
Q Consensus 15 ~~~~~~~~~g~~-------l~~~~~~~l~~qL~~F~~~L~~Fa~~h~~eI~~dp 61 (250)
+++.+|..+-.. |.+++...|..||..|.++|..|..+...-+..-.
T Consensus 150 ~ak~kf~kLR~DV~~KleLLd~~r~kv~~~qL~~~~~al~~y~~~~~~~l~~~~ 203 (224)
T 1i4d_A 150 AHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQTL 203 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 557777755544 46778889999999999999999998877665554
No 459
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=20.86 E-value=99 Score=22.17 Aligned_cols=33 Identities=27% Similarity=0.276 Sum_probs=16.9
Q ss_pred CCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhcc
Q 025599 115 GGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLK 151 (250)
Q Consensus 115 GGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~ 151 (250)
-|.|+..|+...+... | ..+|+++|..-++.+-
T Consensus 50 ~G~I~~~El~~~l~~l-g---~~~~~~ei~~l~~~~D 82 (100)
T 2lv7_A 50 NGFISKQELGTAMRSL-G---YMPNEVELEVIIQRLD 82 (100)
T ss_dssp SSCBCHHHHHHHHHHH-T---CCCCTTTHHHHHHHHC
T ss_pred CCcCCHHHHHHHHHHh-C---CCCCHHHHHHHHHHHC
Confidence 3566666665555443 2 3455555555544443
No 460
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=20.85 E-value=2.1e+02 Score=19.62 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=13.7
Q ss_pred CceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhh
Q 025599 116 GLINLQELCNLLRQRRKSNREAVSEDDCLRAISK 149 (250)
Q Consensus 116 Gli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~ 149 (250)
|.|+..|+...+... | ..++++++...++.
T Consensus 44 G~I~~~El~~~l~~~-g---~~~~~~e~~~l~~~ 73 (94)
T 2kz2_A 44 GYISAAELRHVMTNL-G---EKLTDEEVDEMIRE 73 (94)
T ss_dssp SCBCHHHHHHHHHHH-T---CCCCHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHh-C---CCCCHHHHHHHHHH
Confidence 555555555444432 1 23455554444443
No 461
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=20.84 E-value=1.5e+02 Score=26.82 Aligned_cols=70 Identities=9% Similarity=0.046 Sum_probs=51.1
Q ss_pred ccCCCeEEEEECCEEEEEecCCccchhHHHHHHHHHhC--CCccHHHHHHhcCCChHHHHHHHHHHHH-----cCCceee
Q 025599 152 VLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQAQ--GFVTVDEVERRLSWTSGRAIDALDILLE-----EGLAMVD 224 (250)
Q Consensus 152 ~LG~g~~vi~ig~~~~v~svp~El~~D~~~vLela~~~--g~vt~~~L~~~l~W~~~Ra~~~L~~l~~-----~Gl~WvD 224 (250)
.||.|---+.++++++.-.| |+-|..||-+-+.. ..+|.++|.+..|.+..-.+.+|.-|.. .+++-.+
T Consensus 178 ~lg~~~l~~~~~~~~~~l~v----s~~Qa~ILllFn~~~~~~lt~~ei~~~t~i~~~~L~r~L~sL~~~~k~k~~iL~~~ 253 (382)
T 3dpl_C 178 LMSNGIITFKNEVGQYDLEV----TTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLLYE 253 (382)
T ss_dssp GGCEEEEEEECSSCEEEEEE----EHHHHHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHHHHHHHCCTTCSSCSEEES
T ss_pred CcccEEEEEEeCCceEEEEE----cHHHHHHHHHhccCCCCcCcHHHHHHHHCcCHHHHHHHHHHHhcccchhcceeeec
Confidence 46665444444544555555 77898888766553 6899999999999999999999998864 3677665
Q ss_pred c
Q 025599 225 D 225 (250)
Q Consensus 225 ~ 225 (250)
.
T Consensus 254 ~ 254 (382)
T 3dpl_C 254 P 254 (382)
T ss_dssp S
T ss_pred C
Confidence 4
No 462
>1dzk_A PIG OBP, odorant-binding protein; lipocalin, transport, olfaction, sensory transduction; HET: PRZ; 1.48A {Sus scrofa} SCOP: b.60.1.1 PDB: 1dzj_A* 1dzm_A* 1dzp_A* 1e00_A* 1e02_A* 1e06_A* 1hqp_A* 1a3y_A
Probab=20.79 E-value=54 Score=25.01 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=18.0
Q ss_pred cChhHHHHHHHHHHHcCCCC
Q 025599 59 KNPTFRSQFHEMCAKVGVDP 78 (250)
Q Consensus 59 ~dp~fR~~F~~mC~siGVDP 78 (250)
-+|+...+|++.|.++|+|+
T Consensus 124 ~~~e~~~~f~~~~~~~G~~~ 143 (157)
T 1dzk_A 124 IEDQDLEKFKEVTRENGIPE 143 (157)
T ss_dssp CCHHHHHHHHHHHHHTTCCG
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 47889999999999999995
No 463
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.77 E-value=1.2e+02 Score=23.20 Aligned_cols=47 Identities=19% Similarity=0.276 Sum_probs=37.0
Q ss_pred HHHHHHhhhhcccCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCC
Q 025599 101 VQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGN 155 (250)
Q Consensus 101 vqIvevC~~tr~~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~ 155 (250)
..|+++... +++-++..||+..+.+. ...||..=|.|.++.|...|-
T Consensus 17 ~~Il~~L~~----~~~h~sa~eI~~~l~~~----~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 17 AAVSAALQE----VEEFRSAQELHDMLKHK----GDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHHTT----CSSCEEHHHHHHHHHHT----TCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHh----CCCCCCHHHHHHHHHHh----CCCCCHHHHHHHHHHHHHCCC
Confidence 445665543 35689999999999764 256999999999999998875
No 464
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=20.67 E-value=3.3e+02 Score=25.69 Aligned_cols=47 Identities=21% Similarity=0.373 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHH---------HHHHHHHHhcccccccChhHHHHHHHHHHHcCCC
Q 025599 26 NVAKLRTDLMKEQLATFR---------SQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVD 77 (250)
Q Consensus 26 ~l~~~~~~~l~~qL~~F~---------~~L~~Fa~~h~~eI~~dp~fR~~F~~mC~siGVD 77 (250)
.++.+|++++.+....|- .-|..+.+.-.-. |+- .++.+|...+..|
T Consensus 295 ~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~----~Te-eEI~~Lf~~~D~D 350 (440)
T 3u0k_A 295 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQN----PTE-AELQDMINEVDAD 350 (440)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCC----CCH-HHHHHHHHHHCSS
T ss_pred hhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCC----CCH-HHHHHHHHHhCCC
Confidence 355556666666555542 3455544443322 221 2355666666555
No 465
>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*
Probab=20.58 E-value=27 Score=31.32 Aligned_cols=75 Identities=15% Similarity=0.274 Sum_probs=47.8
Q ss_pred CHHHHHHHHhhccccCCCeEEEEEC-CEEEEEecCCccchhHHHHHHHHH-hCC---CccHHHHHHhcCCChHHHHHHHH
Q 025599 139 SEDDCLRAISKLKVLGNGYEVISVG-KKKLVRSVPTELNKDHNQILELAQ-AQG---FVTVDEVERRLSWTSGRAIDALD 213 (250)
Q Consensus 139 S~~DI~rAik~L~~LG~g~~vi~ig-~~~~v~svp~El~~D~~~vLela~-~~g---~vt~~~L~~~l~W~~~Ra~~~L~ 213 (250)
+++++.+.++.+. ..||..+++. |. + ...|- .+++.+. ..| -+.++ .|-+|+...|...+.
T Consensus 139 ~~~~~~~~a~~~~--~~G~~~~K~K~g~------~--~~~d~-~~v~avR~a~g~~~~l~vD---an~~~~~~~a~~~~~ 204 (354)
T 3jva_A 139 EPNVMAQKAVEKV--KLGFDTLKIKVGT------G--IEADI-ARVKAIREAVGFDIKLRLD---ANQAWTPKDAVKAIQ 204 (354)
T ss_dssp CHHHHHHHHHHHH--HTTCSEEEEECCS------C--HHHHH-HHHHHHHHHHCTTSEEEEE---CTTCSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--HhCCCeEEEEeCC------C--HHHHH-HHHHHHHHHcCCCCeEEEE---CCCCCCHHHHHHHHH
Confidence 6777777666654 3578888874 32 1 12233 2333332 222 12222 377999999999999
Q ss_pred HHHHcCCceeecCC
Q 025599 214 ILLEEGLAMVDDGH 227 (250)
Q Consensus 214 ~l~~~Gl~WvD~q~ 227 (250)
.|...|+.|+++-.
T Consensus 205 ~L~~~~i~~iEqP~ 218 (354)
T 3jva_A 205 ALADYQIELVEQPV 218 (354)
T ss_dssp HTTTSCEEEEECCS
T ss_pred HHHhcCCCEEECCC
Confidence 99999999999654
No 466
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=20.53 E-value=1.5e+02 Score=22.91 Aligned_cols=47 Identities=19% Similarity=0.247 Sum_probs=37.3
Q ss_pred HHHHHHhhhhcccCC-CceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCC
Q 025599 101 VQIVEICLATRPHNG-GLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGN 155 (250)
Q Consensus 101 vqIvevC~~tr~~nG-Gli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~ 155 (250)
..|+++... ++ +-++..||+..+.+. ...||..=|.|+++.|...|-
T Consensus 20 ~~Il~~L~~----~~~~h~sa~ei~~~l~~~----~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 20 LKILEVLQQ----PECQHISAEELYKKLIDL----GEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHHHHTS----GGGSSEEHHHHHHHHHHT----TCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHh----CCCCCCCHHHHHHHHHHh----CCCCCHHHHHHHHHHHHHCCc
Confidence 456666653 34 679999999999875 256999999999999998775
No 467
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=20.50 E-value=96 Score=27.58 Aligned_cols=45 Identities=13% Similarity=0.050 Sum_probs=36.9
Q ss_pred HHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHHHHcCCceeec
Q 025599 179 HNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEEGLAMVDD 225 (250)
Q Consensus 179 ~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gl~WvD~ 225 (250)
...+|... .+..|+.+|+..+|.+..+++..|+.|...|++.+++
T Consensus 45 ~~~ll~~L--~~~~t~~eLa~~~g~~~~~v~~~L~~l~~~gll~~~~ 89 (373)
T 2qm3_A 45 VENVLSAV--LASDDIWRIVDLSEEPLPLVVAILESLNELGYVTFED 89 (373)
T ss_dssp HHHHHHHH--HHCSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECSS
T ss_pred HHHHHHHh--cCCCCHHHHHHHhCCChHHHHHHHHHHhhCCcEEECC
Confidence 34456555 3567999999999999999999999999999998753
No 468
>1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A
Probab=20.36 E-value=41 Score=29.91 Aligned_cols=76 Identities=18% Similarity=0.236 Sum_probs=47.3
Q ss_pred CHHHHHHHHhhccccCCCeEEEEEC-CEEEEEecCCccchhHHHHHHHH-HhCCC---ccHHHHHHhcCCChHHHHHHHH
Q 025599 139 SEDDCLRAISKLKVLGNGYEVISVG-KKKLVRSVPTELNKDHNQILELA-QAQGF---VTVDEVERRLSWTSGRAIDALD 213 (250)
Q Consensus 139 S~~DI~rAik~L~~LG~g~~vi~ig-~~~~v~svp~El~~D~~~vLela-~~~g~---vt~~~L~~~l~W~~~Ra~~~L~ 213 (250)
+++++.++++.+.. .||..+++. |. + .+..|- .+++.+ +..|. +.+ -.|-+|+...|...+.
T Consensus 144 ~~~~~~~~a~~~~~--~Gf~~iKik~g~------~-~~~~~~-e~v~avr~a~g~~~~l~v---Dan~~~~~~~a~~~~~ 210 (359)
T 1mdl_A 144 GVKLATERAVTAAE--LGFRAVKTRIGY------P-ALDQDL-AVVRSIRQAVGDDFGIMV---DYNQSLDVPAAIKRSQ 210 (359)
T ss_dssp HHHHHHHHHHHHHH--TTCSEEEEECCC------S-SHHHHH-HHHHHHHHHHCSSSEEEE---ECTTCSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--cCCCEEEEecCC------C-CHHHHH-HHHHHHHHHhCCCCEEEE---ECCCCCCHHHHHHHHH
Confidence 56777666666544 368888874 32 1 223232 233332 22232 322 2367999999999999
Q ss_pred HHHHcCCceeecCC
Q 025599 214 ILLEEGLAMVDDGH 227 (250)
Q Consensus 214 ~l~~~Gl~WvD~q~ 227 (250)
.|...|+.|+.+-.
T Consensus 211 ~l~~~~i~~iE~P~ 224 (359)
T 1mdl_A 211 ALQQEGVTWIEEPT 224 (359)
T ss_dssp HHHHHTCSCEECCS
T ss_pred HHHHhCCCeEECCC
Confidence 99999999998644
No 469
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=20.24 E-value=1e+02 Score=23.59 Aligned_cols=42 Identities=12% Similarity=0.160 Sum_probs=32.8
Q ss_pred CccchhHHHHHHHHHhCCCccHHHHHHhcCCChHHHHHHHHHH
Q 025599 173 TELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDIL 215 (250)
Q Consensus 173 ~El~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l 215 (250)
..|+..+..|+.+.-..|+ |.+++++.+|.+..-++..|...
T Consensus 92 ~~Lp~~~r~vl~L~~~~g~-s~~EIA~~lgis~~tV~~~l~ra 133 (157)
T 2lfw_A 92 ARMTPLSRQALLLTAMEGF-SPEDAAYLIEVDTSEVETLVTEA 133 (157)
T ss_dssp TTSCTTHHHHHTTTSSSCC-CHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHcCC-CHHHHHHHHCcCHHHHHHHHHHH
Confidence 3678888888877665554 99999999999988777776643
No 470
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=20.20 E-value=1.9e+02 Score=18.94 Aligned_cols=34 Identities=3% Similarity=0.173 Sum_probs=22.2
Q ss_pred cCCCceeHHHHHHHHHhhcCCCCCCCCHHH---HHHHHhhc
Q 025599 113 HNGGLINLQELCNLLRQRRKSNREAVSEDD---CLRAISKL 150 (250)
Q Consensus 113 ~nGGli~l~el~~~v~k~R~~~~~~IS~~D---I~rAik~L 150 (250)
.+.|.|+..|+...+... | ..+|+++ +...++.+
T Consensus 26 d~~G~I~~~el~~~l~~~-g---~~~~~~~~~~~~~~~~~~ 62 (86)
T 1j7q_A 26 NAENIAPVSDTMDMLTKL-G---QTYTKRETEAIMKEARGP 62 (86)
T ss_dssp TTTSCBCHHHHHHHHHHT-S---CCCSHHHHHHHHHHHHCS
T ss_pred CCCCcCcHHHHHHHHHHH-c---CCCCHHHHHHHHHHHHHh
Confidence 445788888887777654 2 4577777 66555544
No 471
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=20.18 E-value=1.8e+02 Score=23.04 Aligned_cols=44 Identities=27% Similarity=0.330 Sum_probs=30.3
Q ss_pred HHHHHHHHhCCCccHHHHHHhc---CCChHHHHHHHHHHHHcCCceeecC
Q 025599 180 NQILELAQAQGFVTVDEVERRL---SWTSGRAIDALDILLEEGLAMVDDG 226 (250)
Q Consensus 180 ~~vLela~~~g~vt~~~L~~~l---~W~~~Ra~~~L~~l~~~Gl~WvD~q 226 (250)
..+|.++....+ |..+|.+.| |++.+-+..+|+.|...|++ ||.
T Consensus 21 ~~Al~~Ls~r~~-s~~EL~~KL~~kg~~~e~Ie~vl~~l~~~g~l--dD~ 67 (162)
T 3dfg_A 21 QRALGLLVHREH-SKKELNRKLQARGIEPEAAQAAVERLAGEGWQ--DDV 67 (162)
T ss_dssp HHHHHHHHHSCC-CHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSC--CHH
T ss_pred HHHHHHhhchhh-hHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC--CHH
Confidence 345666665544 777777655 78888888888888888754 543
No 472
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Probab=20.15 E-value=2.8e+02 Score=20.82 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=17.7
Q ss_pred HHHHHHHHh-cccccccChhHHHHHHHHHHHcCCC
Q 025599 44 SQLEDFARK-HKNDIRKNPTFRSQFHEMCAKVGVD 77 (250)
Q Consensus 44 ~~L~~Fa~~-h~~eI~~dp~fR~~F~~mC~siGVD 77 (250)
.....|-.. ..+.|.. ..|..++.++|..
T Consensus 29 ~~f~~~D~~~~~G~i~~-----~e~~~~l~~~~~~ 58 (190)
T 2l2e_A 29 QWYKGFFKDCPSGHLNK-----SEFQKIYKQFFPF 58 (190)
T ss_dssp HHHHHHHHHSCCCEECH-----HHHHHHHHHHCCC
T ss_pred HHHHHHHHhCCCCcCCH-----HHHHHHHHHhCCC
Confidence 345556666 3666653 3577788777754
No 473
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A
Probab=20.12 E-value=1.1e+02 Score=21.52 Aligned_cols=46 Identities=13% Similarity=0.039 Sum_probs=28.3
Q ss_pred cccCCCceeHHHHHHHHHhhcCC-CCCCCCHHHHHHHHhhccccCCC
Q 025599 111 RPHNGGLINLQELCNLLRQRRKS-NREAVSEDDCLRAISKLKVLGNG 156 (250)
Q Consensus 111 r~~nGGli~l~el~~~v~k~R~~-~~~~IS~~DI~rAik~L~~LG~g 156 (250)
++-+||.|+..|+...+...-+. ....+|+++|.+-++.+-.=|.|
T Consensus 24 ~dg~gg~I~~~El~~~l~~~~~~~lg~~~~~~~v~~~~~~~D~d~dG 70 (95)
T 2wcb_A 24 RKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDE 70 (95)
T ss_dssp SSSSTTEEEHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTTSSSSTTS
T ss_pred cCCCCCccCHHHHHHHHHHHhhhhccccccHHHHHHHHHHHcCCCCC
Confidence 34455799999998877652110 01346888887777766554444
No 474
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=20.09 E-value=51 Score=23.34 Aligned_cols=39 Identities=31% Similarity=0.446 Sum_probs=27.8
Q ss_pred hhhcccCCCceeHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEE
Q 025599 108 LATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVI 160 (250)
Q Consensus 108 ~~tr~~nGGli~l~el~~~v~k~R~~~~~~IS~~DI~rAik~L~~LG~g~~vi 160 (250)
-..+...|+.++|.+.... +| |..++++++++. .||+|+
T Consensus 40 p~~~~~~g~~~TL~~aa~~----~g-----id~d~l~~~L~~-----~g~~~~ 78 (81)
T 2fi0_A 40 PLMRNTVGRKVSLKQGSKL----AG-----TPMDKIVRTLEA-----NGYEVI 78 (81)
T ss_dssp HHHHTTHHHHCBHHHHHHH----HT-----CCHHHHHHHHHH-----TTCEEE
T ss_pred cHHHhhhcccCcHHHHHHH----cC-----CCHHHHHHHHHH-----cCCEee
Confidence 3444556788888887432 23 899999999887 478875
Done!