BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025600
(250 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 120 bits (301), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 116/229 (50%), Gaps = 12/229 (5%)
Query: 19 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFVAVSVGANIS 78
+A AEF +M+IFV GS + + ++N P +V S+ ++ V +IS
Sbjct: 14 KAVTAEFLAMLIFVLLSVGSTINWGG-SEN--PLPVDMVLISLCFGLSIATMVQCFGHIS 70
Query: 79 GGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFAL 133
GGH+NPAVT I+ +S+ Y AQ LG+++ +L T GGL + +
Sbjct: 71 GGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTT--V 128
Query: 134 SSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNILAGGAFDG 193
+ A + ++ E+++TF LV+T++A+ D KR + L + G
Sbjct: 129 HGNLTAGHGLLVELIITFQLVFTIFASC-DDKRTDVTGSVALAIGFSVAIGHLFAINYTG 187
Query: 194 ASMNPAVSFGPAVVSWTWDNHWVYWLGPFIGXXXXXXXYTVAFICPNTH 242
ASMNPA SFGPAV+ W+NHW+YW+GP IG Y F CP+
Sbjct: 188 ASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVF-CPDVE 235
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 120 bits (300), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 116/229 (50%), Gaps = 12/229 (5%)
Query: 19 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFVAVSVGANIS 78
+A AEF +M+IFV GS + + ++N P +V S+ ++ V +IS
Sbjct: 14 KAVTAEFLAMLIFVLLSVGSTINWGG-SEN--PLPVDMVLISLCFGLSIATMVQCFGHIS 70
Query: 79 GGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFAL 133
GGH+NPAVT I+ +S+ Y AQ LG+++ +L T GGL + +
Sbjct: 71 GGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTT--V 128
Query: 134 SSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNILAGGAFDG 193
+ A + ++ E+++TF LV+T++A+ D KR + L + G
Sbjct: 129 HGNLTAGHGLLVELIITFQLVFTIFASC-DSKRTDVTGSVALAIGFSVAIGHLFAINYTG 187
Query: 194 ASMNPAVSFGPAVVSWTWDNHWVYWLGPFIGXXXXXXXYTVAFICPNTH 242
ASMNPA SFGPAV+ W+NHW+YW+GP IG Y F CP+
Sbjct: 188 ASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVF-CPDVE 235
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 120 bits (300), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 116/229 (50%), Gaps = 12/229 (5%)
Query: 19 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFVAVSVGANIS 78
+A AEF +M+IFV GS + + ++N P +V S+ ++ V +IS
Sbjct: 53 KAVTAEFLAMLIFVLLSVGSTINWGG-SEN--PLPVDMVLISLCFGLSIATMVQCFGHIS 109
Query: 79 GGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFAL 133
GGH+NPAVT I+ +S+ Y AQ LG+++ +L T GGL + +
Sbjct: 110 GGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTT--V 167
Query: 134 SSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNILAGGAFDG 193
+ A + ++ E+++TF LV+T++A+ D KR + L + G
Sbjct: 168 HGNLTAGHGLLVELIITFQLVFTIFASC-DDKRTDVTGSVALAIGFSVAIGHLFAINYTG 226
Query: 194 ASMNPAVSFGPAVVSWTWDNHWVYWLGPFIGXXXXXXXYTVAFICPNTH 242
ASMNPA SFGPAV+ W+NHW+YW+GP IG Y F CP+
Sbjct: 227 ASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVF-CPDVE 274
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 117 bits (292), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 112/226 (49%), Gaps = 12/226 (5%)
Query: 19 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFVAVSVGANIS 78
+A AEF +M+IFV GS + + P +V S+ ++ V +IS
Sbjct: 5 KAVTAEFLAMLIFVLLSLGSTINWG---GTEKPLPVDMVLISLCFGLSIATMVQCFGHIS 61
Query: 79 GGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFAL 133
GGH+NPAVT I+ +S+ Y AQ LG+++ +L T GGL + +
Sbjct: 62 GGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTM--V 119
Query: 134 SSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNILAGGAFDG 193
+ A + ++ E+++TF LV+T++A+ D KR + L + G
Sbjct: 120 HGNLTAGHGLLVELIITFQLVFTIFASC-DSKRTDVTGSIALAIGFSVAIGHLFAINYTG 178
Query: 194 ASMNPAVSFGPAVVSWTWDNHWVYWLGPFIGXXXXXXXYTVAFICP 239
ASMNPA SFGPAV+ W+NHW+YW+GP IG Y F CP
Sbjct: 179 ASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVF-CP 223
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 115/220 (52%), Gaps = 8/220 (3%)
Query: 19 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFVAV---SVGA 75
RA VAEF +M++F+F GS + + + T A + ++ AF L +A SVG
Sbjct: 12 RAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVG- 70
Query: 76 NISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAF---A 132
+ISG H+NPAVT G + I+ +R+I+Y IAQ +G++VA +L T L ++ A
Sbjct: 71 HISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNA 130
Query: 133 LSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNILAGGAFD 192
L+ GV + + EI+ T LV V AT D +R + L +
Sbjct: 131 LAPGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSGPLAIGFSVALGHLLAIDYT 189
Query: 193 GASMNPAVSFGPAVVSWTWDNHWVYWLGPFIGXXXXXXXY 232
G +NPA SFG +V++ + +HW++W+GPFIG Y
Sbjct: 190 GCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIY 229
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 106/209 (50%), Gaps = 11/209 (5%)
Query: 19 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFVAVSVGANIS 78
RA AEFF+ + +VF G G+ + + A P ++ ++A AL V +IS
Sbjct: 11 RAICAEFFASLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHIS 63
Query: 79 GGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS--- 135
G HVNPAVTF VG ++ +R+I Y +AQLLG+V +L T AL++
Sbjct: 64 GAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHP 123
Query: 136 GVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNILAGGAFDGAS 195
GV A + EI +T V ++AT D +R L G + GA
Sbjct: 124 GVSVGQATIVEIFLTLQFVLCIFAT-YDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAG 182
Query: 196 MNPAVSFGPAVVSWTWDNHWVYWLGPFIG 224
MNPA SF PA+++ + NHWVYW+GP IG
Sbjct: 183 MNPARSFAPAILTRNFTNHWVYWVGPVIG 211
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 106/209 (50%), Gaps = 11/209 (5%)
Query: 19 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFVAVSVGANIS 78
RA AEFF+ + +VF G G+ + + A P ++ ++A AL V +IS
Sbjct: 11 RAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHIS 63
Query: 79 GGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS--- 135
G HVNPAVTF VG ++ +R+I Y +AQLLG+V +L T AL++
Sbjct: 64 GAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHP 123
Query: 136 GVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNILAGGAFDGAS 195
GV A + EI +T V ++AT D +R L G + GA
Sbjct: 124 GVSVGQATIVEIFLTLQFVLCIFAT-YDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAG 182
Query: 196 MNPAVSFGPAVVSWTWDNHWVYWLGPFIG 224
MNPA SF PA+++ + NHWVYW+GP IG
Sbjct: 183 MNPARSFAPAILTRNFTNHWVYWVGPVIG 211
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 114 bits (285), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 106/209 (50%), Gaps = 11/209 (5%)
Query: 19 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFVAVSVGANIS 78
RA AEFF+ + +VF G G+ + + A P ++ ++A AL V +IS
Sbjct: 7 RAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHIS 59
Query: 79 GGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS--- 135
G HVNPAVTF VG ++ +R+I Y +AQLLG+V +L T AL++
Sbjct: 60 GAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHP 119
Query: 136 GVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNILAGGAFDGAS 195
GV A + EI +T V ++AT D +R L G + GA
Sbjct: 120 GVSVGQATIVEIFLTLQFVLCIFAT-YDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAG 178
Query: 196 MNPAVSFGPAVVSWTWDNHWVYWLGPFIG 224
MNPA SF PA+++ + NHWVYW+GP IG
Sbjct: 179 MNPARSFAPAILTRNFTNHWVYWVGPVIG 207
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 114 bits (284), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 106/209 (50%), Gaps = 11/209 (5%)
Query: 19 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFVAVSVGANIS 78
RA AEFF+ + +VF G G+ + + A P ++ ++A AL V +IS
Sbjct: 5 RAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHIS 57
Query: 79 GGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS--- 135
G HVNPAVTF VG ++ +R+I Y +AQLLG+V +L T AL++
Sbjct: 58 GAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHP 117
Query: 136 GVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNILAGGAFDGAS 195
GV A + EI +T V ++AT D +R L G + GA
Sbjct: 118 GVSVGQATIVEIFLTLQFVLCIFAT-YDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAG 176
Query: 196 MNPAVSFGPAVVSWTWDNHWVYWLGPFIG 224
MNPA SF PA+++ + NHWVYW+GP IG
Sbjct: 177 MNPARSFAPAILTRNFTNHWVYWVGPVIG 205
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 109/218 (50%), Gaps = 6/218 (2%)
Query: 19 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFAL-FVAVSVGANI 77
RA VAEF + +FVF GS + + N V S+A ++ +A SVG +I
Sbjct: 12 RAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVG-HI 70
Query: 78 SGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA---LS 134
SG H+NPAVT G + I+ R+++Y IAQ +G++VA +L T L ++ L+
Sbjct: 71 SGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNSLGRNDLA 130
Query: 135 SGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNILAGGAFDGA 194
GV + + EI+ T LV V AT D +R + L + G
Sbjct: 131 DGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSAPLAIGLSVALGHLLAIDYTGC 189
Query: 195 SMNPAVSFGPAVVSWTWDNHWVYWLGPFIGXXXXXXXY 232
+NPA SFG AV++ + NHW++W+GPFIG Y
Sbjct: 190 GINPARSFGSAVITHNFSNHWIFWVGPFIGGALAVLIY 227
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 116/217 (53%), Gaps = 14/217 (6%)
Query: 19 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFVAVSVGANIS 78
RAA+AEF + ++F++ + + +SK T GL+ + A +FV V A IS
Sbjct: 39 RAAIAEFIATLLFLYITVATVIGHSKETV--VCGSVGLLGIAWAFGGMIFVLVYCTAGIS 96
Query: 79 GGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLK-FSTGGLET---SAFALS 134
GGH+NPAVTFG F+ ++ +R+++Y IAQ LG++ L+K F G A +++
Sbjct: 97 GGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVA 156
Query: 135 SGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNI----LAGGA 190
G A+ EI+ TF LVYTV+ +A DPKR + LA
Sbjct: 157 LGYNKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIGFAVFMVHLATIP 215
Query: 191 FDGASMNPAVSFGPAVV---SWTWDNHWVYWLGPFIG 224
G +NPA SFG AV+ + WD+ W++W+GPFIG
Sbjct: 216 ITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIG 252
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 116/217 (53%), Gaps = 14/217 (6%)
Query: 19 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFVAVSVGANIS 78
RAA+AEF + ++F++ + + +SK T GL+ + A +FV V A IS
Sbjct: 62 RAAIAEFIATLLFLYITVATVIGHSKETV--VCGSVGLLGIAWAFGGMIFVLVYCTAGIS 119
Query: 79 GGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLK-FSTGGLET---SAFALS 134
GGH+NPAVTFG F+ ++ +R+++Y IAQ LG++ L+K F G A +++
Sbjct: 120 GGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVA 179
Query: 135 SGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNI----LAGGA 190
G A+ EI+ TF LVYTV+ +A DPKR + LA
Sbjct: 180 LGYNKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIGFAVFMVHLATIP 238
Query: 191 FDGASMNPAVSFGPAVV---SWTWDNHWVYWLGPFIG 224
G +NPA SFG AV+ + WD+ W++W+GPFIG
Sbjct: 239 ITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIG 275
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 116/217 (53%), Gaps = 14/217 (6%)
Query: 19 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFVAVSVGANIS 78
RAA+AEF + ++F++ + + +SK T GL+ + A +FV V A IS
Sbjct: 39 RAAIAEFIATLLFLYITVATVIGHSKETV--VCGSVGLLGIAWAFGGMIFVLVYCTAGIS 96
Query: 79 GGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLK-FSTGGLET---SAFALS 134
GGH+NPAVTFG F+ ++ +R+++Y IAQ LG++ L+K F G A +++
Sbjct: 97 GGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVA 156
Query: 135 SGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNI----LAGGA 190
G A+ EI+ TF LVYTV+ +A DPKR + LA
Sbjct: 157 LGYNKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIGFAVFMVHLATIP 215
Query: 191 FDGASMNPAVSFGPAVV---SWTWDNHWVYWLGPFIG 224
G +NPA SFG AV+ + WD+ W++W+GPFIG
Sbjct: 216 ITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIG 252
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 115/217 (52%), Gaps = 14/217 (6%)
Query: 19 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFVAVSVGANIS 78
RAA+AEF + ++F++ + + +SK T GL+ + A +FV V A IS
Sbjct: 58 RAAIAEFIATLLFLYITVATVIGHSKETV--VCGSVGLLGIAWAFGGMIFVLVYCTAGIS 115
Query: 79 GGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLK-FSTGGLET---SAFALS 134
GGH+NPAVTFG F+ + +R+++Y IAQ LG++ L+K F G A +++
Sbjct: 116 GGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVA 175
Query: 135 SGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNI----LAGGA 190
G A+ EI+ TF LVYTV+ +A DPKR + LA
Sbjct: 176 LGYNKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIGFAVFMVHLATIP 234
Query: 191 FDGASMNPAVSFGPAVV---SWTWDNHWVYWLGPFIG 224
G +NPA SFG AV+ + WD+ W++W+GPFIG
Sbjct: 235 ITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIG 271
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 115/217 (52%), Gaps = 14/217 (6%)
Query: 19 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFVAVSVGANIS 78
RAA+AEF + ++F++ + + +SK T GL+ + A +FV V A IS
Sbjct: 62 RAAIAEFIATLLFLYITVATVIGHSKETV--VCGSVGLLGIAWAFGGMIFVLVYCTAGIS 119
Query: 79 GGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLK-FSTGGLET---SAFALS 134
GGH+NPAVTFG F+ + +R+++Y IAQ LG++ L+K F G A +++
Sbjct: 120 GGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVA 179
Query: 135 SGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNI----LAGGA 190
G A+ EI+ TF LVYTV+ +A DPKR + LA
Sbjct: 180 LGYNKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIGFAVFMVHLATIP 238
Query: 191 FDGASMNPAVSFGPAVV---SWTWDNHWVYWLGPFIG 224
G +NPA SFG AV+ + WD+ W++W+GPFIG
Sbjct: 239 ITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIG 275
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 97.1 bits (240), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 110/223 (49%), Gaps = 20/223 (8%)
Query: 18 LRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFVAVSVGA-- 75
L+A AEF + +IFVF G GS + + +A P L IA AF L + A
Sbjct: 12 LKAVFAEFLATLIFVFFGLGSALKWP------SALPTIL---QIALAFGLAIGTLAQALG 62
Query: 76 NISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLK-----FSTGGLETSA 130
+SGGH+NPA+T VG I+ +R+ Y AQL+G++ +L + G L +A
Sbjct: 63 PVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLNARGNLAVNA 122
Query: 131 FALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNILAGGA 190
++ G A+V E+++TF L ++A+ D +R + L G
Sbjct: 123 LNNNTTQG--QAMVVELILTFQLALCIFAS-TDSRRTSPVGSPALSIGLSVTLGHLVGIY 179
Query: 191 FDGASMNPAVSFGPAVVSWTWD-NHWVYWLGPFIGXXXXXXXY 232
F G SMNPA SFGPAVV + HWV+W+GP +G Y
Sbjct: 180 FTGCSMNPARSFGPAVVMNRFSPAHWVFWVGPIVGAVLAAILY 222
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 79/180 (43%), Gaps = 3/180 (1%)
Query: 46 TDNGAATPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYW 105
T +G + PA L+ S F + V V + +SGG++NPAVT + I R IL
Sbjct: 75 TPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVTLALVLARAIPPFRGILMA 134
Query: 106 IAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPK 165
Q++ + A T G A AL G + E T L TV AV+
Sbjct: 135 FTQIVAGMAAAGAASAMTPGEIAFANALGGGASRTRGLFLEAFGTAILCLTVLMLAVEKH 194
Query: 166 RGNXXXXXXXXXXXXXXXNILAGGAFDGASMNPAVSFGPAVVSWTWDN-HWVYWLGPFIG 224
R I + GA +NPA SFGPAV + ++ N HW+YWLGP +G
Sbjct: 195 RATWFAPFVIGIALLIAHLICI--YYTGAGLNPARSFGPAVAARSFPNYHWIYWLGPILG 252
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 100/240 (41%), Gaps = 31/240 (12%)
Query: 19 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGL-------------VSASIAHAF 65
+ +AEF I VF G GS A + + +G +P V+ +A F
Sbjct: 6 KRCIAEFIGTFILVFFGAGSA-AVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGF 64
Query: 66 ALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLL------ 119
A+ ++ NISG H+NPAVT G + + Y IAQLLG+ +
Sbjct: 65 AIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGI 124
Query: 120 -KFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXX 178
+ GGL A A G+ W A++ E+V TF L+ T+ AVD +
Sbjct: 125 GAATVGGL--GATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKGFAGIIIGLT 182
Query: 179 XXXXXNILAGGAFDGASMNPAVSFGPAVVSWT------WDNHWVYWLGPFIGXXXXXXXY 232
L G G+S+NPA +FGP + W+ + +Y +GP +G Y
Sbjct: 183 VAGIITTL--GNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTY 240
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 93/225 (41%), Gaps = 26/225 (11%)
Query: 23 AEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSA-----------SIAHAFALFVAV 71
AE I VF G G+ + + + NGA P +I AFAL +A
Sbjct: 11 AEVVGTFILVFFGPGAAV-ITLMIANGADKPNEFNIGIGALGGLGDWFAIGMAFALAIAA 69
Query: 72 SVGA--NISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETS 129
+ + ISG H+NPAVT + G + Y +AQ +G+ + LL G +
Sbjct: 70 VIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACVGPAAAT 129
Query: 130 AFALSS-----GVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXN 184
L + G+G A++ E + TF L+ + AVD +
Sbjct: 130 VGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAPPGFAGLVIGLTVGGIIT 189
Query: 185 ILAGGAFDGASMNPAVSFGPAV-VSWTWDNHW----VYWLGPFIG 224
+ G G+S+NPA +FGP + S N W +Y +GP +G
Sbjct: 190 TI--GNITGSSLNPARTFGPYLGDSLMGINLWQYFPIYVIGPIVG 232
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 76 NISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACL 117
NI+G +NPA TFG ++G + + Y+ ++G +V +
Sbjct: 193 NITGSSLNPARTFGPYLGDSLMGINLWQYFPIYVIGPIVGAV 234
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 91/218 (41%), Gaps = 29/218 (13%)
Query: 19 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFV---AVSVGA 75
R AE F VF G GS + + + G+ A +A AF L V A +VG
Sbjct: 6 RKLAAESFGTFWLVFGGSGSAVLAAGFPE------LGIGFAGVALAFGLTVLTMAFAVG- 58
Query: 76 NISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKF---STGGLETSAFA 132
+ISGGH NPAVT G + GG + Y IAQ++G +VA LL G + +A
Sbjct: 59 HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASG 118
Query: 133 LSS---------GVGAWNAVVFEIVMTFGLVYTVY-ATAVDPKRGNXXXXXXXXXXXXXX 182
+S G +A+V E+V++ G + ++ AT G
Sbjct: 119 FASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHL 178
Query: 183 XNILAGGAFDGASMNPAVSFGPAVVS--WTWDNHWVYW 218
+I S+NPA S A+ W + W +W
Sbjct: 179 ISI----PVTNCSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 91/218 (41%), Gaps = 29/218 (13%)
Query: 19 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFV---AVSVGA 75
R AE F VF G GS + + + G+ A +A AF L V A +VG
Sbjct: 6 RKLAAESFGTFWLVFGGSGSAVLAAGFPE------LGIGFAGVALAFGLTVLTMAFAVG- 58
Query: 76 NISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKF---STGGLETSAFA 132
+ISGGH NPAVT G + GG + Y IAQ++G +VA LL G + +A
Sbjct: 59 HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASG 118
Query: 133 LSS---------GVGAWNAVVFEIVMTFGLVYTVY-ATAVDPKRGNXXXXXXXXXXXXXX 182
+S G +A+V E+V++ G + ++ AT G
Sbjct: 119 FASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHL 178
Query: 183 XNILAGGAFDGASMNPAVSFGPAVVS--WTWDNHWVYW 218
+I S+NPA S A+ W + W +W
Sbjct: 179 ISI----PVTNCSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 73/155 (47%), Gaps = 22/155 (14%)
Query: 19 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFV---AVSVGA 75
R AE F VF G GS + + + G+ A +A AF L V A +VG
Sbjct: 6 RKLAAESFGTFWLVFGGSGSAVLAAGFPE------LGIGFAGVALAFGLTVLTMAFAVG- 58
Query: 76 NISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKF---STGGLETSAFA 132
+ISGGH NPAVT G + GG + Y IAQ++G +VA LL G + +A
Sbjct: 59 HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASG 118
Query: 133 LSS---------GVGAWNAVVFEIVMTFGLVYTVY 158
+S G +A+V E+V++ G + ++
Sbjct: 119 FASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIH 153
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 91/218 (41%), Gaps = 29/218 (13%)
Query: 19 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFV---AVSVGA 75
R AE F VF G GS + + + G+ A +A AF L V A +VG
Sbjct: 3 RKLAAECFGTFWLVFGGCGSAVLAAGFPE------LGIGFAGVALAFGLTVLTMAFAVG- 55
Query: 76 NISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKF---STGGLETSAFA 132
+ISGGH NPAVT G + GG + Y IAQ++G +VA LL G + +A
Sbjct: 56 HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASG 115
Query: 133 LSS---------GVGAWNAVVFEIVMTFGLVYTVY-ATAVDPKRGNXXXXXXXXXXXXXX 182
+S G +A+V E+V++ G + ++ AT G
Sbjct: 116 FASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHL 175
Query: 183 XNILAGGAFDGASMNPAVSFGPAVVS--WTWDNHWVYW 218
+I S+NPA S A+ W + W +W
Sbjct: 176 ISI----PVTNTSVNPARSTAVAIFQGGWALEQLWFFW 209
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 73/155 (47%), Gaps = 22/155 (14%)
Query: 19 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFV---AVSVGA 75
R AE F VF G GS + + + G+ A +A AF L V A +VG
Sbjct: 6 RKLAAECFGTFWLVFGGCGSAVLAAGFPE------LGIGFAGVALAFGLTVLTMAFAVG- 58
Query: 76 NISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKF---STGGLETSAFA 132
+ISGGH NPAVT G + GG + Y IAQ++G +VA LL G + +A
Sbjct: 59 HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASG 118
Query: 133 LSS---------GVGAWNAVVFEIVMTFGLVYTVY 158
+S G +A+V E+V++ G + ++
Sbjct: 119 FASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIH 153
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 16/152 (10%)
Query: 19 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFVAVSVGANIS 78
R AE F VF G GS + + + G G ++A + +IS
Sbjct: 6 RKLAAECFGTFWLVFGGCGSAVLAAGFPELGI----GFAGVALAWGLTVLTMAFAVGHIS 61
Query: 79 GGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKF---STGGLETSAFALSS 135
GGH NPAVT G + GG + Y IAQ++G +VA LL G + +A +S
Sbjct: 62 GGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFAS 121
Query: 136 ---------GVGAWNAVVFEIVMTFGLVYTVY 158
G +A+V E+V++ G + ++
Sbjct: 122 NGYGEHSPGGYSMLSALVVELVLSAGFLLVIH 153
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 74/156 (47%), Gaps = 24/156 (15%)
Query: 19 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPA-GLVSASIAHAFALFV---AVSVG 74
R AE F VF G GS + A PA G+ A +A A+ L V A +VG
Sbjct: 6 RKLAAECFGTFWLVFGGCGSAVL-------AAGFPALGIGFAGVALAWGLTVLTMAFAVG 58
Query: 75 ANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKF---STGGLETSAF 131
+ISGGH NPAVT G + GG + Y IAQ++G +VA LL G + +A
Sbjct: 59 -HISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAAS 117
Query: 132 ALSS---------GVGAWNAVVFEIVMTFGLVYTVY 158
+S G +A+V E+V++ G + ++
Sbjct: 118 GFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIH 153
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 89/220 (40%), Gaps = 23/220 (10%)
Query: 19 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFVAVSVGANIS 78
R +AEFF VF G GS + + + G G ++A + IS
Sbjct: 31 RKLLAEFFGTFWLVFGGCGSAVFAAAFPELGI----GFTGVALAFGLTVLTMAYAVGGIS 86
Query: 79 GGHVNPAVTFGAFVGGHI---TFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS 135
GGH NPAV+ G V G + V ++ +A + + A ++ G++ FA S+
Sbjct: 87 GGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFA-SN 145
Query: 136 GVGAW--------NAVVFEIVMT-FGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNIL 186
G G +A++ EI++T F L+ + +T G +I
Sbjct: 146 GYGEHSPGGYSLVSALLIEIILTAFFLIVILGSTHGRVPAGFAPIAIGLALTLIHLISI- 204
Query: 187 AGGAFDGASMNPAVSFGPA--VVSWTWDNHWVYWLGPFIG 224
S+NPA S G A V W W++WL P +G
Sbjct: 205 ---PVTNTSVNPARSTGQALFVGGWALQQLWLFWLAPIVG 241
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
Query: 18 LRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFVAVSVGANI 77
+R + EF + +F G+G+ + + + A+F + V A +
Sbjct: 10 VREFIGEFLGTFVLMFLGEGATANF-----HTTGLSGDWYKLCLGWGLAVFFGILVSAKL 64
Query: 78 SGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVV 114
SG H+N AV+ G + +Y+ AQLLG+ V
Sbjct: 65 SGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFV 101
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 87/229 (37%), Gaps = 35/229 (15%)
Query: 12 IGQPDALR-AAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFVA 70
+ Q L+ +AEF + +F G G + L GA+ G S+ + +A
Sbjct: 1 MSQTSTLKGQCIAEFLGTGLLIFFGVG---CVAALKVAGASF--GQWEISVIFGLGVAMA 55
Query: 71 VSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLL----------- 119
+ + A +SG H+NPAVT ++ + I + ++Q+ G+ A L+
Sbjct: 56 IYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDF 115
Query: 120 ----KFSTGGLETSAFA------LSSGVGAWNAVVFEIVMT---FGLVYTVYATAVDPKR 166
G +E+ A + + A E+V+T GL+ + R
Sbjct: 116 EQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPR 175
Query: 167 GNXXXXXXXXXXXXXXXNILAGGAFDGASMNPAVSFGPAVVSWT--WDN 213
G ++ G G +MNPA FGP V +W W N
Sbjct: 176 GPLAPLLIGLLIAVIGASM---GPLTGTAMNPARDFGPKVFAWLAGWGN 221
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 87/229 (37%), Gaps = 35/229 (15%)
Query: 12 IGQPDALR-AAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAATPAGLVSASIAHAFALFVA 70
+ Q L+ +AEF + +F G G + L GA+ G S+ + +A
Sbjct: 1 MSQTSTLKGQCIAEFLGTGLLIFFGVG---CVAALKVAGASF--GQWEISVIWGLGVAMA 55
Query: 71 VSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLL----------- 119
+ + A +SG H+NPAVT ++ + I + ++Q+ G+ A L+
Sbjct: 56 IYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDF 115
Query: 120 ----KFSTGGLETSAFA------LSSGVGAWNAVVFEIVMT---FGLVYTVYATAVDPKR 166
G +E+ A + + A E+V+T GL+ + R
Sbjct: 116 EQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPR 175
Query: 167 GNXXXXXXXXXXXXXXXNILAGGAFDGASMNPAVSFGPAVVSWT--WDN 213
G ++ G G +MNPA FGP V +W W N
Sbjct: 176 GPLAPLLIGLLIAVIGASM---GPLTGFAMNPARDFGPKVFAWLAGWGN 221
>pdb|3VNY|A Chain A, Crystal Structure Of Beta-Glucuronidase From
Acidobacterium Capsulatum
pdb|3VNZ|A Chain A, Crystal Structure Of Beta-Glucuronidase From
Acidobacterium Capsulatum In Complex With D-Glucuronic
Acid
pdb|3VO0|A Chain A, Crystal Structure Of Beta-Glucuronidase From
Acidobacterium Capsulatum Covalent-Bonded With
2-Deoxy-2-Fluoro-D-Glucuronic Acid
Length = 488
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 13 GQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGAA 51
G P+ A E++ M++F AG G + +KLTDN AA
Sbjct: 339 GTPEDGFIARPEYYGMLLFAQAGAGQLLG-AKLTDNSAA 376
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,148,416
Number of Sequences: 62578
Number of extensions: 259669
Number of successful extensions: 624
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 504
Number of HSP's gapped (non-prelim): 38
length of query: 250
length of database: 14,973,337
effective HSP length: 96
effective length of query: 154
effective length of database: 8,965,849
effective search space: 1380740746
effective search space used: 1380740746
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)