Query 025602
Match_columns 250
No_of_seqs 266 out of 1460
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 13:40:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025602.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025602hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h8a_C AMV V-MYB, MYB transfor 100.0 1.2E-37 4E-42 249.4 10.0 119 1-120 5-128 (128)
2 1gv2_A C-MYB, MYB proto-oncoge 100.0 1.4E-35 4.7E-40 229.4 9.9 105 15-120 1-105 (105)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 5.2E-35 1.8E-39 227.3 9.4 104 18-122 1-104 (107)
4 1h89_C C-MYB, MYB proto-oncoge 100.0 5.2E-35 1.8E-39 241.9 8.7 119 1-120 36-159 (159)
5 3zqc_A MYB3; transcription-DNA 100.0 1.4E-34 4.9E-39 232.4 10.8 108 18-126 2-109 (131)
6 3osg_A MYB21; transcription-DN 100.0 5.9E-34 2E-38 227.5 10.0 104 14-119 7-110 (126)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 3.1E-31 1.1E-35 219.2 6.8 111 15-126 3-114 (159)
8 2dim_A Cell division cycle 5-l 99.9 1.8E-23 6.3E-28 150.3 2.9 66 13-79 4-69 (70)
9 1h8a_C AMV V-MYB, MYB transfor 99.8 1.4E-21 5E-26 155.8 6.8 82 44-126 1-83 (128)
10 1ign_A Protein (RAP1); RAP1,ye 99.8 6.9E-20 2.4E-24 158.6 6.8 105 14-119 4-200 (246)
11 2juh_A Telomere binding protei 99.8 2.6E-19 8.8E-24 141.2 3.2 81 14-95 13-103 (121)
12 2d9a_A B-MYB, MYB-related prot 99.7 5.5E-19 1.9E-23 123.1 4.0 56 14-70 4-59 (60)
13 2llk_A Cyclin-D-binding MYB-li 99.7 1.3E-18 4.6E-23 125.9 5.6 58 58-116 10-67 (73)
14 1gvd_A MYB proto-oncogene prot 99.7 6.9E-19 2.4E-23 119.2 3.1 52 16-68 1-52 (52)
15 2roh_A RTBP1, telomere binding 99.7 2.9E-18 1E-22 135.4 6.1 79 13-92 26-114 (122)
16 1guu_A C-MYB, MYB proto-oncoge 99.7 1.1E-18 3.7E-23 118.1 2.5 52 16-68 1-52 (52)
17 1ity_A TRF1; helix-turn-helix, 99.7 4.3E-18 1.5E-22 121.8 3.5 63 13-75 5-68 (69)
18 2cu7_A KIAA1915 protein; nucle 99.7 3.4E-17 1.1E-21 118.2 7.5 58 65-122 3-60 (72)
19 2din_A Cell division cycle 5-l 99.7 2.9E-17 9.9E-22 116.5 7.0 61 63-124 1-61 (66)
20 3sjm_A Telomeric repeat-bindin 99.7 1.3E-17 4.5E-22 117.8 2.8 56 15-70 8-64 (64)
21 1x41_A Transcriptional adaptor 99.7 2.4E-17 8.2E-22 114.9 3.4 55 14-69 4-58 (60)
22 3zqc_A MYB3; transcription-DNA 99.7 9.7E-18 3.3E-22 134.2 1.2 94 1-100 32-130 (131)
23 2d9a_A B-MYB, MYB-related prot 99.7 1.2E-16 4.2E-21 111.1 6.3 55 66-120 3-58 (60)
24 2dim_A Cell division cycle 5-l 99.6 3.9E-16 1.3E-20 111.9 7.1 62 66-127 4-66 (70)
25 1guu_A C-MYB, MYB proto-oncoge 99.6 4.4E-16 1.5E-20 105.2 6.3 50 69-118 1-51 (52)
26 2din_A Cell division cycle 5-l 99.6 3.2E-17 1.1E-21 116.3 0.4 57 14-73 5-61 (66)
27 1w0t_A Telomeric repeat bindin 99.6 9.8E-17 3.3E-21 109.0 2.7 50 17-66 1-51 (53)
28 1gvd_A MYB proto-oncogene prot 99.6 8.5E-16 2.9E-20 103.8 6.5 50 69-118 1-51 (52)
29 2elk_A SPCC24B10.08C protein; 99.6 2E-16 6.9E-21 109.5 3.1 52 14-65 5-56 (58)
30 2yum_A ZZZ3 protein, zinc fing 99.6 1.4E-16 4.9E-21 115.6 1.9 59 14-73 4-67 (75)
31 1ity_A TRF1; helix-turn-helix, 99.6 1.8E-15 6.1E-20 108.1 7.5 60 64-123 3-65 (69)
32 1w0t_A Telomeric repeat bindin 99.6 2E-15 6.7E-20 102.5 6.6 50 70-119 1-53 (53)
33 1x41_A Transcriptional adaptor 99.6 1.8E-15 6.2E-20 105.3 6.3 53 66-118 3-56 (60)
34 2cu7_A KIAA1915 protein; nucle 99.6 2.8E-16 9.6E-21 113.3 1.9 56 14-71 5-60 (72)
35 1gv2_A C-MYB, MYB proto-oncoge 99.6 2.5E-16 8.5E-21 121.1 1.2 66 1-68 34-104 (105)
36 2k9n_A MYB24; R2R3 domain, DNA 99.6 1.8E-16 6.1E-21 122.5 0.1 66 1-68 31-101 (107)
37 2yum_A ZZZ3 protein, zinc fing 99.6 4.8E-15 1.7E-19 107.5 6.2 57 66-122 3-65 (75)
38 3sjm_A Telomeric repeat-bindin 99.5 1E-14 3.4E-19 102.9 6.4 52 69-120 9-63 (64)
39 3osg_A MYB21; transcription-DN 99.5 9.2E-16 3.1E-20 121.9 0.5 64 1-66 40-108 (126)
40 2ckx_A NGTRF1, telomere bindin 99.5 8.8E-15 3E-19 108.3 5.2 69 19-88 1-79 (83)
41 2elk_A SPCC24B10.08C protein; 99.5 2.2E-14 7.7E-19 99.1 6.5 50 67-116 5-56 (58)
42 2llk_A Cyclin-D-binding MYB-li 99.5 5.9E-15 2E-19 106.6 3.6 54 13-70 18-71 (73)
43 2ltp_A Nuclear receptor corepr 99.3 1.5E-15 5.2E-20 113.9 0.0 56 64-119 9-64 (89)
44 2aje_A Telomere repeat-binding 99.5 1E-14 3.5E-19 112.3 4.1 76 14-90 9-94 (105)
45 2yus_A SWI/SNF-related matrix- 99.4 3.9E-14 1.3E-18 103.9 4.1 49 14-64 14-62 (79)
46 2cqr_A RSGI RUH-043, DNAJ homo 99.4 1.4E-13 4.6E-18 99.5 5.8 51 67-117 14-68 (73)
47 2ltp_A Nuclear receptor corepr 99.1 1.2E-14 4.1E-19 109.0 0.0 53 13-67 11-63 (89)
48 2yus_A SWI/SNF-related matrix- 99.4 5.3E-13 1.8E-17 97.8 5.2 48 68-115 15-62 (79)
49 2cqr_A RSGI RUH-043, DNAJ homo 99.3 1.3E-13 4.4E-18 99.6 1.0 52 14-66 14-68 (73)
50 1x58_A Hypothetical protein 49 99.3 1.9E-12 6.3E-17 90.0 6.5 49 70-118 7-58 (62)
51 1ign_A Protein (RAP1); RAP1,ye 99.3 1.4E-12 4.7E-17 113.1 4.9 55 67-121 4-64 (246)
52 2ckx_A NGTRF1, telomere bindin 99.3 4E-12 1.4E-16 93.9 6.7 49 72-120 1-54 (83)
53 2aje_A Telomere repeat-binding 99.3 1.4E-11 4.6E-16 94.9 8.0 54 67-120 9-67 (105)
54 2juh_A Telomere binding protei 99.3 6.5E-12 2.2E-16 98.9 6.2 55 65-119 11-70 (121)
55 2cjj_A Radialis; plant develop 99.2 9.3E-12 3.2E-16 93.9 6.1 50 70-119 7-60 (93)
56 2roh_A RTBP1, telomere binding 99.2 4.4E-11 1.5E-15 94.3 6.6 54 67-120 27-85 (122)
57 2cjj_A Radialis; plant develop 99.1 1.2E-11 4.3E-16 93.2 1.5 48 17-65 7-57 (93)
58 3hm5_A DNA methyltransferase 1 99.0 4.6E-10 1.6E-14 84.3 6.6 66 54-123 17-87 (93)
59 2eqr_A N-COR1, N-COR, nuclear 99.0 5E-10 1.7E-14 77.9 6.4 46 70-115 11-56 (61)
60 1x58_A Hypothetical protein 49 99.0 1.6E-10 5.6E-15 80.2 1.7 49 16-66 6-57 (62)
61 2eqr_A N-COR1, N-COR, nuclear 98.9 7.2E-10 2.5E-14 77.1 3.5 48 16-65 10-57 (61)
62 2cqq_A RSGI RUH-037, DNAJ homo 98.9 2.8E-09 9.4E-14 76.6 6.2 50 68-118 5-58 (72)
63 2iw5_B Protein corest, REST co 98.8 5E-09 1.7E-13 90.1 6.9 77 40-118 104-180 (235)
64 1wgx_A KIAA1903 protein; MYB D 98.7 2E-08 6.7E-13 72.2 5.9 47 71-117 8-58 (73)
65 2cqq_A RSGI RUH-037, DNAJ homo 98.7 5.2E-09 1.8E-13 75.1 1.9 51 15-67 5-58 (72)
66 1fex_A TRF2-interacting telome 98.6 8.5E-09 2.9E-13 71.2 1.4 48 18-66 2-58 (59)
67 2xag_B REST corepressor 1; ami 98.6 3.1E-08 1E-12 94.0 5.6 43 72-114 381-423 (482)
68 1wgx_A KIAA1903 protein; MYB D 98.6 1.8E-08 6.3E-13 72.3 2.1 49 18-67 8-59 (73)
69 2iw5_B Protein corest, REST co 98.5 4.3E-08 1.5E-12 84.3 2.7 48 17-66 132-179 (235)
70 1ug2_A 2610100B20RIK gene prod 98.3 1E-06 3.5E-11 65.2 5.5 46 73-118 35-83 (95)
71 1fex_A TRF2-interacting telome 98.3 9.8E-07 3.4E-11 60.8 5.1 47 71-117 2-58 (59)
72 2yqk_A Arginine-glutamic acid 98.3 1.9E-06 6.6E-11 60.0 6.6 48 66-113 4-52 (63)
73 4eef_G F-HB80.4, designed hema 98.2 3.1E-07 1.1E-11 65.6 0.7 44 18-62 20-66 (74)
74 4eef_G F-HB80.4, designed hema 98.1 3.8E-07 1.3E-11 65.2 0.6 43 71-113 20-66 (74)
75 2lr8_A CAsp8-associated protei 97.4 3.1E-07 1.1E-11 64.5 0.0 44 73-117 16-62 (70)
76 1ofc_X ISWI protein; nuclear p 98.1 2.5E-06 8.6E-11 76.7 5.5 99 19-118 111-275 (304)
77 4iej_A DNA methyltransferase 1 98.0 1.5E-05 5.3E-10 59.5 7.4 60 60-123 23-87 (93)
78 2yqk_A Arginine-glutamic acid 98.0 3.7E-06 1.3E-10 58.5 2.8 48 14-63 5-53 (63)
79 2crg_A Metastasis associated p 97.8 4.9E-05 1.7E-09 53.9 6.9 43 71-113 8-51 (70)
80 3hm5_A DNA methyltransferase 1 97.8 7.4E-06 2.5E-10 61.4 2.2 50 16-66 28-81 (93)
81 4a69_C Nuclear receptor corepr 97.8 3.8E-05 1.3E-09 57.6 6.1 44 71-114 43-86 (94)
82 2xag_B REST corepressor 1; ami 97.7 1.6E-05 5.4E-10 75.5 2.7 46 17-64 379-424 (482)
83 4a69_C Nuclear receptor corepr 97.5 4.5E-05 1.5E-09 57.2 2.2 44 18-63 43-86 (94)
84 2crg_A Metastasis associated p 97.4 5.5E-05 1.9E-09 53.7 2.2 44 18-63 8-52 (70)
85 2ebi_A DNA binding protein GT- 97.3 3.6E-05 1.2E-09 56.5 -0.4 49 17-65 3-63 (86)
86 1ug2_A 2610100B20RIK gene prod 97.2 0.00011 3.8E-09 54.3 1.4 47 17-64 32-80 (95)
87 2ebi_A DNA binding protein GT- 97.1 0.00031 1.1E-08 51.3 3.5 48 71-118 4-65 (86)
88 2y9y_A Imitation switch protei 96.9 0.0022 7.6E-08 59.0 8.2 102 19-121 124-294 (374)
89 2lr8_A CAsp8-associated protei 96.0 0.00014 4.8E-09 51.0 0.0 46 19-66 15-62 (70)
90 4b4c_A Chromodomain-helicase-D 96.5 0.0032 1.1E-07 53.0 5.9 100 17-117 6-195 (211)
91 4iej_A DNA methyltransferase 1 96.0 0.0031 1E-07 47.0 2.3 49 16-65 28-80 (93)
92 1irz_A ARR10-B; helix-turn-hel 94.6 0.1 3.5E-06 36.1 6.3 46 70-115 6-56 (64)
93 4b4c_A Chromodomain-helicase-D 94.5 0.033 1.1E-06 46.6 4.4 30 18-47 134-163 (211)
94 1ofc_X ISWI protein; nuclear p 93.1 0.16 5.4E-06 45.5 6.4 45 72-116 111-156 (304)
95 2xb0_X Chromo domain-containin 92.5 0.068 2.3E-06 47.1 3.1 29 19-47 169-197 (270)
96 1irz_A ARR10-B; helix-turn-hel 90.3 0.21 7.3E-06 34.5 3.1 49 15-63 4-55 (64)
97 2xb0_X Chromo domain-containin 80.1 3.8 0.00013 35.8 6.7 48 71-118 3-55 (270)
98 2y9y_A Imitation switch protei 72.9 2.6 8.8E-05 38.7 3.6 32 17-48 227-261 (374)
99 2rq5_A Protein jumonji; develo 69.6 2.2 7.7E-05 32.8 2.2 46 39-87 64-113 (121)
100 2o8x_A Probable RNA polymerase 65.7 8.5 0.00029 25.1 4.3 40 77-117 18-57 (70)
101 2li6_A SWI/SNF chromatin-remod 63.8 2.2 7.4E-05 32.4 1.0 39 28-67 53-98 (116)
102 1ku3_A Sigma factor SIGA; heli 63.0 10 0.00035 25.4 4.3 40 77-117 13-56 (73)
103 2p7v_B Sigma-70, RNA polymeras 58.8 10 0.00035 25.0 3.7 40 77-117 8-51 (68)
104 1ig6_A MRF-2, modulator recogn 58.1 3.6 0.00012 30.6 1.3 40 28-67 37-87 (107)
105 2jrz_A Histone demethylase jar 56.1 3.2 0.00011 31.5 0.7 40 28-67 44-93 (117)
106 2kk0_A AT-rich interactive dom 55.3 6.7 0.00023 30.9 2.6 56 28-83 68-136 (145)
107 2li6_A SWI/SNF chromatin-remod 53.4 12 0.0004 28.2 3.6 38 81-118 53-98 (116)
108 1c20_A DEAD ringer protein; DN 52.2 3.6 0.00012 31.7 0.5 40 28-67 56-106 (128)
109 3hug_A RNA polymerase sigma fa 49.8 21 0.00071 25.0 4.3 38 78-116 41-78 (92)
110 2jrz_A Histone demethylase jar 49.8 26 0.00088 26.3 5.0 38 81-118 44-93 (117)
111 2jxj_A Histone demethylase jar 49.8 4.9 0.00017 29.2 0.8 40 28-67 40-89 (96)
112 2cxy_A BAF250B subunit, HBAF25 49.2 4.3 0.00015 31.1 0.5 40 28-67 55-104 (125)
113 2lm1_A Lysine-specific demethy 48.8 32 0.0011 25.2 5.3 38 81-118 48-97 (107)
114 3cz6_A DNA-binding protein RAP 48.0 12 0.00042 30.2 3.0 25 14-38 110-142 (168)
115 2lm1_A Lysine-specific demethy 47.9 4.2 0.00014 30.1 0.2 40 28-67 48-97 (107)
116 2eqy_A RBP2 like, jumonji, at 47.6 5.4 0.00019 30.5 0.8 39 28-66 46-94 (122)
117 2jvw_A Uncharacterized protein 47.0 8.8 0.0003 27.7 1.8 45 26-83 18-69 (88)
118 2eqy_A RBP2 like, jumonji, at 44.9 34 0.0011 25.9 5.0 38 81-118 46-95 (122)
119 1x3u_A Transcriptional regulat 44.8 38 0.0013 22.5 4.9 41 74-117 17-57 (79)
120 2cxy_A BAF250B subunit, HBAF25 43.8 38 0.0013 25.6 5.2 38 81-118 55-104 (125)
121 2yqf_A Ankyrin-1; death domain 43.3 39 0.0013 24.9 5.1 36 74-110 13-48 (111)
122 3c57_A Two component transcrip 42.6 37 0.0013 24.0 4.7 46 73-122 27-72 (95)
123 1tty_A Sigma-A, RNA polymerase 41.4 35 0.0012 23.6 4.3 40 77-117 21-64 (87)
124 2rq5_A Protein jumonji; develo 40.0 40 0.0014 25.6 4.7 75 18-118 7-96 (121)
125 1or7_A Sigma-24, RNA polymeras 39.9 42 0.0014 26.0 5.1 28 89-117 155-182 (194)
126 3ulq_B Transcriptional regulat 39.8 58 0.002 22.9 5.4 45 71-118 27-71 (90)
127 1je8_A Nitrate/nitrite respons 38.4 39 0.0013 23.1 4.2 42 73-117 21-62 (82)
128 3i4p_A Transcriptional regulat 37.9 42 0.0014 26.1 4.7 43 77-120 3-46 (162)
129 1kkx_A Transcription regulator 37.3 16 0.00056 27.8 2.1 38 82-119 53-98 (123)
130 1c20_A DEAD ringer protein; DN 37.2 56 0.0019 24.7 5.2 38 81-118 56-106 (128)
131 1k78_A Paired box protein PAX5 37.2 1.3E+02 0.0044 22.4 7.7 78 18-100 30-118 (149)
132 2jpc_A SSRB; DNA binding prote 36.7 63 0.0022 20.1 4.8 37 79-117 3-39 (61)
133 1fse_A GERE; helix-turn-helix 36.4 47 0.0016 21.5 4.2 42 73-117 11-52 (74)
134 2o71_A Death domain-containing 35.2 48 0.0017 24.8 4.5 28 81-109 26-53 (115)
135 2of5_H Leucine-rich repeat and 35.0 39 0.0013 25.2 3.9 31 79-110 13-43 (118)
136 1xsv_A Hypothetical UPF0122 pr 34.5 64 0.0022 23.7 5.1 38 78-116 29-66 (113)
137 2kk0_A AT-rich interactive dom 34.4 59 0.002 25.3 5.0 38 81-118 68-118 (145)
138 2k27_A Paired box protein PAX- 34.3 1.5E+02 0.0051 22.4 9.1 78 18-100 23-111 (159)
139 2of5_A Death domain-containing 32.1 47 0.0016 24.9 3.9 36 70-109 18-53 (114)
140 2q1z_A RPOE, ECF SIGE; ECF sig 32.1 29 0.00099 26.8 2.9 29 88-117 149-177 (184)
141 2dbb_A Putative HTH-type trans 31.7 84 0.0029 23.6 5.5 44 77-121 9-53 (151)
142 2rnj_A Response regulator prot 31.0 50 0.0017 22.9 3.7 42 73-117 29-70 (91)
143 1rp3_A RNA polymerase sigma fa 30.4 68 0.0023 25.5 5.0 34 82-116 195-228 (239)
144 1wxp_A THO complex subunit 1; 30.3 64 0.0022 23.7 4.4 31 79-110 18-48 (110)
145 3mzy_A RNA polymerase sigma-H 29.8 58 0.002 24.1 4.2 27 89-116 123-149 (164)
146 3e7l_A Transcriptional regulat 28.3 99 0.0034 20.0 4.7 34 76-110 18-51 (63)
147 3i4p_A Transcriptional regulat 27.2 15 0.00052 28.7 0.4 41 24-66 3-43 (162)
148 2e1c_A Putative HTH-type trans 26.9 1.2E+02 0.004 23.8 5.7 43 77-120 27-70 (171)
149 3cz6_A DNA-binding protein RAP 26.6 52 0.0018 26.6 3.4 17 67-83 110-126 (168)
150 1ntc_A Protein (nitrogen regul 25.7 1.2E+02 0.0039 21.2 4.9 35 76-111 50-84 (91)
151 2p1m_A SKP1-like protein 1A; F 25.4 29 0.00098 27.3 1.7 35 42-84 119-153 (160)
152 1s7o_A Hypothetical UPF0122 pr 25.3 1.1E+02 0.0038 22.4 4.9 41 74-116 23-63 (113)
153 3eyi_A Z-DNA-binding protein 1 24.0 49 0.0017 22.9 2.4 36 21-57 7-42 (72)
154 2cyy_A Putative HTH-type trans 23.9 1.1E+02 0.0037 23.1 4.9 44 77-121 7-51 (151)
155 1p4w_A RCSB; solution structur 23.9 1.6E+02 0.0053 21.0 5.5 44 71-117 32-75 (99)
156 1ntc_A Protein (nitrogen regul 23.4 52 0.0018 23.1 2.7 29 24-53 51-79 (91)
157 1u78_A TC3 transposase, transp 22.9 2.2E+02 0.0074 20.5 9.3 87 19-111 5-99 (141)
158 1g2h_A Transcriptional regulat 21.7 56 0.0019 21.2 2.4 32 20-53 17-48 (61)
No 1
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=1.2e-37 Score=249.35 Aligned_cols=119 Identities=39% Similarity=0.821 Sum_probs=102.3
Q ss_pred CCCCCCCcccccC-----CCCCCCCCCHHHHHHHHHHHHHhCCCCccchhhhcCCccccccccccccccccCCccCCCCC
Q 025602 1 MAGKRKTPCCSKG-----EGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFS 75 (250)
Q Consensus 1 m~g~~~~~c~~k~-----~~i~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~l~~~~WT 75 (250)
|+||+..+|+.+| |++++|+||+|||++|+++|.+||.++|..||..|+ +|++.||++||.++|+|.+++++||
T Consensus 5 ~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT 83 (128)
T 1h8a_C 5 IKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 83 (128)
T ss_dssp -----------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCC
T ss_pred cCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCC
Confidence 7899999999986 899999999999999999999999888999999998 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHHhhhhhh
Q 025602 76 KDEEDLVIRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLSKRV 120 (250)
Q Consensus 76 ~eEd~~Ll~~~~~~g~~W~~Ia~~lpgRT~~~~knrw~~~l~k~~ 120 (250)
+|||.+|++++.+||++|+.||++|||||+++|++||+.++++++
T Consensus 84 ~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 84 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999998764
No 2
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=1.4e-35 Score=229.44 Aligned_cols=105 Identities=43% Similarity=0.865 Sum_probs=99.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCccchhhhcCCccccccccccccccccCCccCCCCCHHHHHHHHHHHHHhCCCHH
Q 025602 15 GLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLVIRLHKLLGNRWA 94 (250)
Q Consensus 15 ~i~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~l~~~~WT~eEd~~Ll~~~~~~g~~W~ 94 (250)
++++|+||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.+++++||+|||.+|++++.+||++|+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 47899999999999999999999989999999998 99999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHhhhhhh
Q 025602 95 LIAGRLPGRTDNDIKNYWNTKLSKRV 120 (250)
Q Consensus 95 ~Ia~~lpgRT~~~~knrw~~~l~k~~ 120 (250)
.||++|||||+++|++||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999998764
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=5.2e-35 Score=227.26 Aligned_cols=104 Identities=28% Similarity=0.540 Sum_probs=100.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccchhhhcCCccccccccccccccccCCccCCCCCHHHHHHHHHHHHHhCCCHHHHh
Q 025602 18 RGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLVIRLHKLLGNRWALIA 97 (250)
Q Consensus 18 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~l~~~~WT~eEd~~Ll~~~~~~g~~W~~Ia 97 (250)
||+||+|||++|+++|..||.++|..||..|+ +|++.||++||.++|+|.+++++||+|||.+|+++|.+||++|+.||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68999999999999999999889999999999 99999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHhhhhhhhc
Q 025602 98 GRLPGRTDNDIKNYWNTKLSKRVDA 122 (250)
Q Consensus 98 ~~lpgRT~~~~knrw~~~l~k~~~~ 122 (250)
++|||||+++|++||+.++++..+.
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999999876544
No 4
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=5.2e-35 Score=241.94 Aligned_cols=119 Identities=39% Similarity=0.801 Sum_probs=107.2
Q ss_pred CCCCCCCcccccC-----CCCCCCCCCHHHHHHHHHHHHHhCCCCccchhhhcCCccccccccccccccccCCccCCCCC
Q 025602 1 MAGKRKTPCCSKG-----EGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFS 75 (250)
Q Consensus 1 m~g~~~~~c~~k~-----~~i~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~l~~~~WT 75 (250)
|+||...+|+.++ |.+++|+||+|||++|+++|..||.++|..||..|+ +|++.||+.||.++|+|.+++++||
T Consensus 36 l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT 114 (159)
T 1h89_C 36 LPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 114 (159)
T ss_dssp -------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCC
T ss_pred cCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCC
Confidence 6899999999874 899999999999999999999999878999999998 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHHhhhhhh
Q 025602 76 KDEEDLVIRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLSKRV 120 (250)
Q Consensus 76 ~eEd~~Ll~~~~~~g~~W~~Ia~~lpgRT~~~~knrw~~~l~k~~ 120 (250)
++||.+|++++.+||++|+.||++|||||+++|++||+.++++++
T Consensus 115 ~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 115 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999998764
No 5
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=1.4e-34 Score=232.40 Aligned_cols=108 Identities=37% Similarity=0.790 Sum_probs=104.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccchhhhcCCccccccccccccccccCCccCCCCCHHHHHHHHHHHHHhCCCHHHHh
Q 025602 18 RGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLVIRLHKLLGNRWALIA 97 (250)
Q Consensus 18 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~l~~~~WT~eEd~~Ll~~~~~~g~~W~~Ia 97 (250)
||+||+|||++|+++|..||.++|..||..|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||.+|+.||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 79999999999999999999889999999998 99999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHhhhhhhhcCCCC
Q 025602 98 GRLPGRTDNDIKNYWNTKLSKRVDANHHH 126 (250)
Q Consensus 98 ~~lpgRT~~~~knrw~~~l~k~~~~~~~~ 126 (250)
++|||||+++|++||+++|++++......
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~ 109 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSNH 109 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTTS
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCCc
Confidence 99999999999999999999998765544
No 6
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=5.9e-34 Score=227.46 Aligned_cols=104 Identities=33% Similarity=0.641 Sum_probs=100.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCccchhhhcCCccccccccccccccccCCccCCCCCHHHHHHHHHHHHHhCCCH
Q 025602 14 EGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLVIRLHKLLGNRW 93 (250)
Q Consensus 14 ~~i~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~l~~~~WT~eEd~~Ll~~~~~~g~~W 93 (250)
+..+||+||+|||++|+++|.+||. +|..||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||.+|
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W 84 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQW 84 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCH
Confidence 5789999999999999999999998 9999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHhhhhh
Q 025602 94 ALIAGRLPGRTDNDIKNYWNTKLSKR 119 (250)
Q Consensus 94 ~~Ia~~lpgRT~~~~knrw~~~l~k~ 119 (250)
+.||+.|||||+++|++||+.++++.
T Consensus 85 ~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 85 AIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999888653
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=3.1e-31 Score=219.23 Aligned_cols=111 Identities=28% Similarity=0.631 Sum_probs=65.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCccchhhhcCCccccccccccccccccCCccCCCCCHHHHHHHHHHHHHhCC-CH
Q 025602 15 GLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLVIRLHKLLGN-RW 93 (250)
Q Consensus 15 ~i~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~l~~~~WT~eEd~~Ll~~~~~~g~-~W 93 (250)
++++|+||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.+++++||+|||.+|+++|.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 47899999999999999999999889999999998 99999999999999999999999999999999999999996 79
Q ss_pred HHHhhhCCCCCHHHHHHHHHHhhhhhhhcCCCC
Q 025602 94 ALIAGRLPGRTDNDIKNYWNTKLSKRVDANHHH 126 (250)
Q Consensus 94 ~~Ia~~lpgRT~~~~knrw~~~l~k~~~~~~~~ 126 (250)
..||..|||||+.||++||+.+|.+.++...++
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT 114 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 114 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCC
Confidence 999999999999999999999987765544443
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.8e-23 Score=150.31 Aligned_cols=66 Identities=30% Similarity=0.743 Sum_probs=63.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCccchhhhcCCccccccccccccccccCCccCCCCCHHHH
Q 025602 13 GEGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEE 79 (250)
Q Consensus 13 ~~~i~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~l~~~~WT~eEd 79 (250)
+|.+++|+||+|||++|+++|.+||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 3789999999999999999999999779999999999 99999999999999999999999999997
No 9
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.84 E-value=1.4e-21 Score=155.78 Aligned_cols=82 Identities=27% Similarity=0.594 Sum_probs=55.5
Q ss_pred hhhhcCCccccccccccccccccCCccCCCCCHHHHHHHHHHHHHhCC-CHHHHhhhCCCCCHHHHHHHHHHhhhhhhhc
Q 025602 44 IPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLVIRLHKLLGN-RWALIAGRLPGRTDNDIKNYWNTKLSKRVDA 122 (250)
Q Consensus 44 Ia~~l~~~Rt~~qcr~Rw~~~L~p~l~~~~WT~eEd~~Ll~~~~~~g~-~W~~Ia~~lpgRT~~~~knrw~~~l~k~~~~ 122 (250)
||+.|+ +|++.||+.||.++|+|.+++++||+|||++|+++|.+||. +|..||..|||||+.||++||+.+|.+.++.
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 788998 99999999999999999999999999999999999999996 7999999999999999999999998776655
Q ss_pred CCCC
Q 025602 123 NHHH 126 (250)
Q Consensus 123 ~~~~ 126 (250)
..++
T Consensus 80 ~~WT 83 (128)
T 1h8a_C 80 TSWT 83 (128)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 4444
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.79 E-value=6.9e-20 Score=158.63 Aligned_cols=105 Identities=19% Similarity=0.290 Sum_probs=92.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCC-----ccchhhhcCCccccccccccccccccCCcc------------------
Q 025602 14 EGLNRGAWKAVEDKILTDYIKAYGEGK-----WRHIPKAAGLKRCGKSCRLRWMNYLRPDIK------------------ 70 (250)
Q Consensus 14 ~~i~kg~WT~eED~~L~~~v~~~g~~~-----W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~l~------------------ 70 (250)
+.++|++||+|||++|+++|.++|..+ |..||+.|+ |||+.|||.||..+|++.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn 82 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN 82 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCC
Confidence 578899999999999999999998743 999999999 99999999999999999986
Q ss_pred -----------CCCCCHHHHHHHHHHHHH-h--------------------------------CC---------------
Q 025602 71 -----------RGNFSKDEEDLVIRLHKL-L--------------------------------GN--------------- 91 (250)
Q Consensus 71 -----------~~~WT~eEd~~Ll~~~~~-~--------------------------------g~--------------- 91 (250)
+..||.+||-.|+..+.+ + +.
T Consensus 83 ~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 162 (246)
T 1ign_A 83 LIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRT 162 (246)
T ss_dssp BCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CC
T ss_pred ceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhcc
Confidence 789999999999998877 1 11
Q ss_pred ----------CHHHHhhhCCCCCHHHHHHHHHHhhhhh
Q 025602 92 ----------RWALIAGRLPGRTDNDIKNYWNTKLSKR 119 (250)
Q Consensus 92 ----------~W~~Ia~~lpgRT~~~~knrw~~~l~k~ 119 (250)
.|.+||+.+|+||.+++|+||...|+..
T Consensus 163 ~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 163 QSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred ccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 5999999999999999999999888665
No 11
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.75 E-value=2.6e-19 Score=141.21 Aligned_cols=81 Identities=21% Similarity=0.400 Sum_probs=77.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCccchhhhc----CCcccccccccccccccc-----CCccCC-CCCHHHHHHHH
Q 025602 14 EGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAA----GLKRCGKSCRLRWMNYLR-----PDIKRG-NFSKDEEDLVI 83 (250)
Q Consensus 14 ~~i~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l----~~~Rt~~qcr~Rw~~~L~-----p~l~~~-~WT~eEd~~Ll 83 (250)
+..++++||+|||++|+++|.+||.++|+.|+..+ + +||+.+|++||+++|+ |.++++ +|+++|+.+|+
T Consensus 13 ~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~ 91 (121)
T 2juh_A 13 QRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVL 91 (121)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHH
Confidence 67899999999999999999999999999999985 5 9999999999999998 999999 99999999999
Q ss_pred HHHHHhCCCHHH
Q 025602 84 RLHKLLGNRWAL 95 (250)
Q Consensus 84 ~~~~~~g~~W~~ 95 (250)
+++..+|++|++
T Consensus 92 ~~h~~~gn~~~~ 103 (121)
T 2juh_A 92 AAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHccchhc
Confidence 999999999876
No 12
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=5.5e-19 Score=123.07 Aligned_cols=56 Identities=20% Similarity=0.560 Sum_probs=53.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCccchhhhcCCccccccccccccccccCCcc
Q 025602 14 EGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIK 70 (250)
Q Consensus 14 ~~i~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~l~ 70 (250)
|.+++++||+|||++|+++|.+||.++|..||+.|+ +||+.||++||.++|+|.++
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 789999999999999999999999779999999998 99999999999999999875
No 13
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-18 Score=125.85 Aligned_cols=58 Identities=21% Similarity=0.331 Sum_probs=47.2
Q ss_pred cccccccccCCccCCCCCHHHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHHhh
Q 025602 58 RLRWMNYLRPDIKRGNFSKDEEDLVIRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKL 116 (250)
Q Consensus 58 r~Rw~~~L~p~l~~~~WT~eEd~~Ll~~~~~~g~~W~~Ia~~lpgRT~~~~knrw~~~l 116 (250)
--||.++|+|.+++++||+|||++|++++++||++|+.||+.| |||+++||+||+.+.
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999999999 999999999998643
No 14
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.74 E-value=6.9e-19 Score=119.15 Aligned_cols=52 Identities=40% Similarity=0.832 Sum_probs=49.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccchhhhcCCccccccccccccccccCC
Q 025602 16 LNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPD 68 (250)
Q Consensus 16 i~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~ 68 (250)
|+||+||+|||++|+++|.+||.++|..||..|+ +||+.||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 6899999999999999999999888999999998 999999999999999984
No 15
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.73 E-value=2.9e-18 Score=135.35 Aligned_cols=79 Identities=22% Similarity=0.394 Sum_probs=73.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCccchhhhc----CCccccccccccccccc-----cCCccCCCCCHHH-HHHH
Q 025602 13 GEGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAA----GLKRCGKSCRLRWMNYL-----RPDIKRGNFSKDE-EDLV 82 (250)
Q Consensus 13 ~~~i~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l----~~~Rt~~qcr~Rw~~~L-----~p~l~~~~WT~eE-d~~L 82 (250)
....++++||+|||++|+++|++||.|+|..|+..+ + +||+.+|++||++++ +|.++++.|+++| +.+|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 357789999999999999999999999999999975 5 999999999999999 8999999999999 8999
Q ss_pred HHHHHHhCCC
Q 025602 83 IRLHKLLGNR 92 (250)
Q Consensus 83 l~~~~~~g~~ 92 (250)
++++..+|++
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999974
No 16
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.72 E-value=1.1e-18 Score=118.11 Aligned_cols=52 Identities=27% Similarity=0.647 Sum_probs=48.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccchhhhcCCccccccccccccccccCC
Q 025602 16 LNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPD 68 (250)
Q Consensus 16 i~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~ 68 (250)
|++|+||+|||++|+++|.+||.++|..||+.|+ +||+.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999989999999998 999999999999999984
No 17
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.70 E-value=4.3e-18 Score=121.85 Aligned_cols=63 Identities=25% Similarity=0.419 Sum_probs=58.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCccchhhhcCC-ccccccccccccccccCCccCCCCC
Q 025602 13 GEGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGL-KRCGKSCRLRWMNYLRPDIKRGNFS 75 (250)
Q Consensus 13 ~~~i~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-~Rt~~qcr~Rw~~~L~p~l~~~~WT 75 (250)
.+..++++||+|||++|+++|.+||.++|..||..|++ +|++.||++||.++|+|.+.++..+
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 36789999999999999999999998899999999976 8999999999999999999987653
No 18
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.69 E-value=3.4e-17 Score=118.15 Aligned_cols=58 Identities=19% Similarity=0.273 Sum_probs=55.3
Q ss_pred ccCCccCCCCCHHHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHHhhhhhhhc
Q 025602 65 LRPDIKRGNFSKDEEDLVIRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLSKRVDA 122 (250)
Q Consensus 65 L~p~l~~~~WT~eEd~~Ll~~~~~~g~~W~~Ia~~lpgRT~~~~knrw~~~l~k~~~~ 122 (250)
++|.+++++||+|||++|++++.+||.+|..||.+|||||+.||++||+.++++.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999988765
No 19
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=2.9e-17 Score=116.47 Aligned_cols=61 Identities=25% Similarity=0.397 Sum_probs=57.3
Q ss_pred ccccCCccCCCCCHHHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHHhhhhhhhcCC
Q 025602 63 NYLRPDIKRGNFSKDEEDLVIRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLSKRVDANH 124 (250)
Q Consensus 63 ~~L~p~l~~~~WT~eEd~~Ll~~~~~~g~~W~~Ia~~lpgRT~~~~knrw~~~l~k~~~~~~ 124 (250)
.+|+|.+++++||.|||++|+++++++|.+|..||. |+|||+.||++||+.+|++.++...
T Consensus 1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 1 GSSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 379999999999999999999999999999999999 8899999999999999999887644
No 20
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.67 E-value=1.3e-17 Score=117.79 Aligned_cols=56 Identities=23% Similarity=0.471 Sum_probs=50.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCccchhhhcCC-ccccccccccccccccCCcc
Q 025602 15 GLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGL-KRCGKSCRLRWMNYLRPDIK 70 (250)
Q Consensus 15 ~i~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-~Rt~~qcr~Rw~~~L~p~l~ 70 (250)
..+|++||+|||++|+++|.+||.++|..||+.+++ +||+.||++||.++++|.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 457999999999999999999999899999998652 89999999999999998764
No 21
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=2.4e-17 Score=114.87 Aligned_cols=55 Identities=18% Similarity=0.460 Sum_probs=51.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCccchhhhcCCccccccccccccccccCCc
Q 025602 14 EGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDI 69 (250)
Q Consensus 14 ~~i~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~l 69 (250)
+.+.+++||+|||++|+++|.+||.++|..||+.|+ +||+.||++||.++|.+..
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCCC
Confidence 689999999999999999999999779999999999 9999999999999998653
No 22
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.66 E-value=9.7e-18 Score=134.16 Aligned_cols=94 Identities=18% Similarity=0.298 Sum_probs=71.9
Q ss_pred CCCCCCCcccccC-----CCCCCCCCCHHHHHHHHHHHHHhCCCCccchhhhcCCccccccccccccccccCCccCCCCC
Q 025602 1 MAGKRKTPCCSKG-----EGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFS 75 (250)
Q Consensus 1 m~g~~~~~c~~k~-----~~i~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~l~~~~WT 75 (250)
|+||...+|+.++ |.+++|+||+|||++|+++|..||. +|..||+.|+ +||+.+|+.||.++|++.+..++|+
T Consensus 32 ~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~ 109 (131)
T 3zqc_A 32 LPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGS-KWSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNH 109 (131)
T ss_dssp CTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCS-CHHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTS
T ss_pred HCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCc
Confidence 7899999999875 8999999999999999999999997 8999999999 9999999999999999999999887
Q ss_pred HHHHHHHHHHHHHhCCCHHHHhhhC
Q 025602 76 KDEEDLVIRLHKLLGNRWALIAGRL 100 (250)
Q Consensus 76 ~eEd~~Ll~~~~~~g~~W~~Ia~~l 100 (250)
.+-- .........|..|++.|
T Consensus 110 ~~~~----~p~~~kk~~~~~i~k~~ 130 (131)
T 3zqc_A 110 KEIL----LPDRSKKRKAADVPKKL 130 (131)
T ss_dssp CCCC----CCCCC------------
T ss_pred cccc----Cchhhhhhhhhhcchhc
Confidence 6531 00111233577776654
No 23
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=1.2e-16 Score=111.09 Aligned_cols=55 Identities=22% Similarity=0.473 Sum_probs=51.7
Q ss_pred cCCccCCCCCHHHHHHHHHHHHHhC-CCHHHHhhhCCCCCHHHHHHHHHHhhhhhh
Q 025602 66 RPDIKRGNFSKDEEDLVIRLHKLLG-NRWALIAGRLPGRTDNDIKNYWNTKLSKRV 120 (250)
Q Consensus 66 ~p~l~~~~WT~eEd~~Ll~~~~~~g-~~W~~Ia~~lpgRT~~~~knrw~~~l~k~~ 120 (250)
+|.+++++||+|||++|+++|.+|| ++|..||.+|||||+.||++||+.+|++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 5788999999999999999999999 599999999999999999999999998764
No 24
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3.9e-16 Score=111.85 Aligned_cols=62 Identities=19% Similarity=0.335 Sum_probs=57.2
Q ss_pred cCCccCCCCCHHHHHHHHHHHHHhC-CCHHHHhhhCCCCCHHHHHHHHHHhhhhhhhcCCCCC
Q 025602 66 RPDIKRGNFSKDEEDLVIRLHKLLG-NRWALIAGRLPGRTDNDIKNYWNTKLSKRVDANHHHH 127 (250)
Q Consensus 66 ~p~l~~~~WT~eEd~~Ll~~~~~~g-~~W~~Ia~~lpgRT~~~~knrw~~~l~k~~~~~~~~~ 127 (250)
.|.+++++||+|||++|+++|.+|| ++|..||.+|+|||+.||++||+.+|++.+++..++.
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~ 66 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSG 66 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCCh
Confidence 4678999999999999999999999 7999999999999999999999999999887766654
No 25
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.63 E-value=4.4e-16 Score=105.20 Aligned_cols=50 Identities=26% Similarity=0.597 Sum_probs=46.2
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCC-CHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 025602 69 IKRGNFSKDEEDLVIRLHKLLGN-RWALIAGRLPGRTDNDIKNYWNTKLSK 118 (250)
Q Consensus 69 l~~~~WT~eEd~~Ll~~~~~~g~-~W~~Ia~~lpgRT~~~~knrw~~~l~k 118 (250)
+++++||+|||.+|+++|.+||. +|..||..|||||+.||++||+.+|.+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999998 999999999999999999999998864
No 26
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=3.2e-17 Score=116.26 Aligned_cols=57 Identities=19% Similarity=0.325 Sum_probs=53.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCccchhhhcCCccccccccccccccccCCccCCC
Q 025602 14 EGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGN 73 (250)
Q Consensus 14 ~~i~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~l~~~~ 73 (250)
|.+++++||+|||++|+++|..||. +|..||+ ++ +||+.||++||.++|+|.++++.
T Consensus 5 P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 5 SSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp SSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence 8999999999999999999999998 9999999 76 79999999999999999877653
No 27
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.62 E-value=9.8e-17 Score=108.99 Aligned_cols=50 Identities=32% Similarity=0.554 Sum_probs=46.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccchhhhcCC-cccccccccccccccc
Q 025602 17 NRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGL-KRCGKSCRLRWMNYLR 66 (250)
Q Consensus 17 ~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-~Rt~~qcr~Rw~~~L~ 66 (250)
+||+||+|||++|+++|.+||.++|..||..+++ +||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999998899999999976 6999999999999875
No 28
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.61 E-value=8.5e-16 Score=103.80 Aligned_cols=50 Identities=30% Similarity=0.706 Sum_probs=47.0
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCC-CHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 025602 69 IKRGNFSKDEEDLVIRLHKLLGN-RWALIAGRLPGRTDNDIKNYWNTKLSK 118 (250)
Q Consensus 69 l~~~~WT~eEd~~Ll~~~~~~g~-~W~~Ia~~lpgRT~~~~knrw~~~l~k 118 (250)
+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||+.+|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999997 699999999999999999999998864
No 29
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.61 E-value=2e-16 Score=109.48 Aligned_cols=52 Identities=25% Similarity=0.463 Sum_probs=48.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCccchhhhcCCccccccccccccccc
Q 025602 14 EGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYL 65 (250)
Q Consensus 14 ~~i~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L 65 (250)
..+.+++||+|||++|+++|.+||.++|..||+.|+.+||+.||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 4577899999999999999999998899999999987899999999999875
No 30
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.4e-16 Score=115.59 Aligned_cols=59 Identities=22% Similarity=0.378 Sum_probs=55.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-----CCccchhhhcCCccccccccccccccccCCccCCC
Q 025602 14 EGLNRGAWKAVEDKILTDYIKAYGE-----GKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGN 73 (250)
Q Consensus 14 ~~i~kg~WT~eED~~L~~~v~~~g~-----~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~l~~~~ 73 (250)
|.+++++||+|||++|+++|.+||. .+|..||+.|+ +||+.||+.||.++|.+.++.|.
T Consensus 4 p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 4 GSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 8899999999999999999999995 68999999999 99999999999999998877664
No 31
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.60 E-value=1.8e-15 Score=108.14 Aligned_cols=60 Identities=18% Similarity=0.219 Sum_probs=54.7
Q ss_pred cccCCccCCCCCHHHHHHHHHHHHHhC-CCHHHHhhhCC--CCCHHHHHHHHHHhhhhhhhcC
Q 025602 64 YLRPDIKRGNFSKDEEDLVIRLHKLLG-NRWALIAGRLP--GRTDNDIKNYWNTKLSKRVDAN 123 (250)
Q Consensus 64 ~L~p~l~~~~WT~eEd~~Ll~~~~~~g-~~W~~Ia~~lp--gRT~~~~knrw~~~l~k~~~~~ 123 (250)
...+..++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||+.+|++.+.+.
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~ 65 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISS 65 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCC
Confidence 345677899999999999999999999 59999999999 9999999999999999887654
No 32
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.59 E-value=2e-15 Score=102.50 Aligned_cols=50 Identities=22% Similarity=0.314 Sum_probs=46.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHhhhCC--CCCHHHHHHHHHHhhhhh
Q 025602 70 KRGNFSKDEEDLVIRLHKLLG-NRWALIAGRLP--GRTDNDIKNYWNTKLSKR 119 (250)
Q Consensus 70 ~~~~WT~eEd~~Ll~~~~~~g-~~W~~Ia~~lp--gRT~~~~knrw~~~l~k~ 119 (250)
++++||+|||++|+++|.+|| ++|..||..|| |||+.||++||..+++.+
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k 53 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence 478999999999999999999 69999999999 999999999999998753
No 33
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=1.8e-15 Score=105.28 Aligned_cols=53 Identities=13% Similarity=0.207 Sum_probs=49.3
Q ss_pred cCCccCCCCCHHHHHHHHHHHHHhC-CCHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 025602 66 RPDIKRGNFSKDEEDLVIRLHKLLG-NRWALIAGRLPGRTDNDIKNYWNTKLSK 118 (250)
Q Consensus 66 ~p~l~~~~WT~eEd~~Ll~~~~~~g-~~W~~Ia~~lpgRT~~~~knrw~~~l~k 118 (250)
.+.+.+++||+|||++|+++|.+|| ++|..||++|||||+.||++||+.+|..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4578899999999999999999999 7999999999999999999999988754
No 34
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.58 E-value=2.8e-16 Score=113.30 Aligned_cols=56 Identities=18% Similarity=0.373 Sum_probs=53.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCccchhhhcCCccccccccccccccccCCccC
Q 025602 14 EGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKR 71 (250)
Q Consensus 14 ~~i~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~l~~ 71 (250)
|.+++++||+|||++|+++|..||. +|..||+.|+ +||+.||+.||.++|.+.++.
T Consensus 5 p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 5 SSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 8899999999999999999999999 9999999999 999999999999999876665
No 35
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.58 E-value=2.5e-16 Score=121.08 Aligned_cols=66 Identities=21% Similarity=0.495 Sum_probs=60.6
Q ss_pred CCCCCCCcccccC-----CCCCCCCCCHHHHHHHHHHHHHhCCCCccchhhhcCCccccccccccccccccCC
Q 025602 1 MAGKRKTPCCSKG-----EGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPD 68 (250)
Q Consensus 1 m~g~~~~~c~~k~-----~~i~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~ 68 (250)
|+||+..+|..++ |.+++|+||+|||++|+++|..||. +|..||+.|| +||+.+|+.||..+|+..
T Consensus 34 l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 34 LKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLP-GRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp STTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCT-TCCHHHHHHHHHHHTC--
T ss_pred hcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHHHHHhcc
Confidence 6899999999874 8999999999999999999999998 8999999998 999999999999988753
No 36
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.57 E-value=1.8e-16 Score=122.54 Aligned_cols=66 Identities=29% Similarity=0.540 Sum_probs=61.5
Q ss_pred CCCCCCCcccccC-----CCCCCCCCCHHHHHHHHHHHHHhCCCCccchhhhcCCccccccccccccccccCC
Q 025602 1 MAGKRKTPCCSKG-----EGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPD 68 (250)
Q Consensus 1 m~g~~~~~c~~k~-----~~i~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~ 68 (250)
|+||+..+|+.++ |.+++|+||+|||++|+.+|..||. +|..||+.|+ +||+.+|+.||..+++..
T Consensus 31 ~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 31 MITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGP-KWNKISKFLK-NRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp TTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCc-CHHHHHHHCC-CCCHHHHHHHHHHHHhhH
Confidence 7899999999874 9999999999999999999999998 8999999998 999999999999887653
No 37
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=4.8e-15 Score=107.46 Aligned_cols=57 Identities=19% Similarity=0.213 Sum_probs=52.8
Q ss_pred cCCccCCCCCHHHHHHHHHHHHHhC------CCHHHHhhhCCCCCHHHHHHHHHHhhhhhhhc
Q 025602 66 RPDIKRGNFSKDEEDLVIRLHKLLG------NRWALIAGRLPGRTDNDIKNYWNTKLSKRVDA 122 (250)
Q Consensus 66 ~p~l~~~~WT~eEd~~Ll~~~~~~g------~~W~~Ia~~lpgRT~~~~knrw~~~l~k~~~~ 122 (250)
+|.+.+++||.|||++|++++.+|| .+|..||.+|||||..||++||+.+|.+.++.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~ 65 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA 65 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence 5788999999999999999999999 78999999999999999999999999876644
No 38
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.53 E-value=1e-14 Score=102.92 Aligned_cols=52 Identities=27% Similarity=0.433 Sum_probs=47.0
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCC-CHHHHhhhCC--CCCHHHHHHHHHHhhhhhh
Q 025602 69 IKRGNFSKDEEDLVIRLHKLLGN-RWALIAGRLP--GRTDNDIKNYWNTKLSKRV 120 (250)
Q Consensus 69 l~~~~WT~eEd~~Ll~~~~~~g~-~W~~Ia~~lp--gRT~~~~knrw~~~l~k~~ 120 (250)
.++++||+|||++|+++|.+||. +|..||+.+| |||+.||++||+++++..+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 46889999999999999999995 9999999866 9999999999999988654
No 39
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.53 E-value=9.2e-16 Score=121.90 Aligned_cols=64 Identities=23% Similarity=0.507 Sum_probs=60.1
Q ss_pred CCCCCCCcccccC-----CCCCCCCCCHHHHHHHHHHHHHhCCCCccchhhhcCCcccccccccccccccc
Q 025602 1 MAGKRKTPCCSKG-----EGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLR 66 (250)
Q Consensus 1 m~g~~~~~c~~k~-----~~i~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~ 66 (250)
|+||...+|+.++ |.+++|+||+|||++|+++|.+||. +|..||+.|+ +||+.+|+.||..+++
T Consensus 40 ~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~l~~ 108 (126)
T 3osg_A 40 FPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR-QWAIIAKFFP-GRTDIHIKNRWVTISN 108 (126)
T ss_dssp CTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS-CHHHHHTTST-TCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 6899999999874 8999999999999999999999997 8999999999 9999999999998765
No 40
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.52 E-value=8.8e-15 Score=108.29 Aligned_cols=69 Identities=23% Similarity=0.473 Sum_probs=60.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccchhhh----cCCccccccccccccccc-----cCCccCC-CCCHHHHHHHHHHHHH
Q 025602 19 GAWKAVEDKILTDYIKAYGEGKWRHIPKA----AGLKRCGKSCRLRWMNYL-----RPDIKRG-NFSKDEEDLVIRLHKL 88 (250)
Q Consensus 19 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~----l~~~Rt~~qcr~Rw~~~L-----~p~l~~~-~WT~eEd~~Ll~~~~~ 88 (250)
++||+|||++|+++|++||.|+|+.|++. ++ +||+.+|++||+++| .|.++++ +...+....++.|+..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999999999996 77 999999999999988 6776665 5666777888888764
No 41
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.51 E-value=2.2e-14 Score=99.12 Aligned_cols=50 Identities=28% Similarity=0.386 Sum_probs=46.0
Q ss_pred CCccCCCCCHHHHHHHHHHHHHhC-CCHHHHhhhCC-CCCHHHHHHHHHHhh
Q 025602 67 PDIKRGNFSKDEEDLVIRLHKLLG-NRWALIAGRLP-GRTDNDIKNYWNTKL 116 (250)
Q Consensus 67 p~l~~~~WT~eEd~~Ll~~~~~~g-~~W~~Ia~~lp-gRT~~~~knrw~~~l 116 (250)
..+.+++||++||.+|+++|.+|| .+|..||++|+ |||+.||++||+.++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 346688999999999999999999 79999999999 999999999998764
No 42
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.51 E-value=5.9e-15 Score=106.64 Aligned_cols=54 Identities=20% Similarity=0.280 Sum_probs=47.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCccchhhhcCCccccccccccccccccCCcc
Q 025602 13 GEGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIK 70 (250)
Q Consensus 13 ~~~i~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~l~ 70 (250)
+|.+++|+||+|||++|+++|.+||. +|..||+.| +||+.||+.||.. |....+
T Consensus 18 dP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~ 71 (73)
T 2llk_A 18 GDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCN 71 (73)
T ss_dssp -CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHcc
Confidence 48999999999999999999999998 699999999 7999999999985 444433
No 43
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.25 E-value=1.5e-15 Score=113.88 Aligned_cols=56 Identities=16% Similarity=0.218 Sum_probs=52.8
Q ss_pred cccCCccCCCCCHHHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHHhhhhh
Q 025602 64 YLRPDIKRGNFSKDEEDLVIRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLSKR 119 (250)
Q Consensus 64 ~L~p~l~~~~WT~eEd~~Ll~~~~~~g~~W~~Ia~~lpgRT~~~~knrw~~~l~k~ 119 (250)
.+.|.+++++||.|||.+|++++.+||++|..||.+|||||++||++||+.++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 46788999999999999999999999999999999999999999999999988764
No 44
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.50 E-value=1e-14 Score=112.32 Aligned_cols=76 Identities=21% Similarity=0.367 Sum_probs=66.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCccchhhhc----CCccccccccccccccc-----cCCccCCCCCHHHHHH-HH
Q 025602 14 EGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAA----GLKRCGKSCRLRWMNYL-----RPDIKRGNFSKDEEDL-VI 83 (250)
Q Consensus 14 ~~i~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l----~~~Rt~~qcr~Rw~~~L-----~p~l~~~~WT~eEd~~-Ll 83 (250)
...++++||+|||++|+++|.+||.++|+.|+..+ + +||+.+|++||++++ +|.++++.-+++|--. ++
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~-~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~ 87 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDAD-HRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVL 87 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTT-CCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHH
Confidence 67889999999999999999999999999999966 5 999999999999998 6899999888877655 77
Q ss_pred HHHHHhC
Q 025602 84 RLHKLLG 90 (250)
Q Consensus 84 ~~~~~~g 90 (250)
+|+..+|
T Consensus 88 ~~~~~~~ 94 (105)
T 2aje_A 88 NAHGYWT 94 (105)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776644
No 45
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.45 E-value=3.9e-14 Score=103.91 Aligned_cols=49 Identities=18% Similarity=0.520 Sum_probs=46.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCccchhhhcCCcccccccccccccc
Q 025602 14 EGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNY 64 (250)
Q Consensus 14 ~~i~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~ 64 (250)
....+++||+|||++|+++|.+|| ++|..||+.|+ +||+.||+.||.++
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred ccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 577899999999999999999999 69999999999 99999999999998
No 46
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.43 E-value=1.4e-13 Score=99.50 Aligned_cols=51 Identities=14% Similarity=0.267 Sum_probs=47.2
Q ss_pred CCccCCCCCHHHHHHHHHHHHHhC----CCHHHHhhhCCCCCHHHHHHHHHHhhh
Q 025602 67 PDIKRGNFSKDEEDLVIRLHKLLG----NRWALIAGRLPGRTDNDIKNYWNTKLS 117 (250)
Q Consensus 67 p~l~~~~WT~eEd~~Ll~~~~~~g----~~W~~Ia~~lpgRT~~~~knrw~~~l~ 117 (250)
+.+.+++||.+||.+|++++..|| .+|.+||.+|||||..+|++||+.++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 456788999999999999999999 689999999999999999999998765
No 47
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.14 E-value=1.2e-14 Score=108.97 Aligned_cols=53 Identities=21% Similarity=0.413 Sum_probs=50.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCccchhhhcCCccccccccccccccccC
Q 025602 13 GEGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRP 67 (250)
Q Consensus 13 ~~~i~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p 67 (250)
.|.+++|+||+|||++|+++|..||. +|..||..|+ +||+.||+.||.++|..
T Consensus 11 ~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 11 RENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 38999999999999999999999999 8999999999 99999999999999864
No 48
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.36 E-value=5.3e-13 Score=97.84 Aligned_cols=48 Identities=10% Similarity=0.232 Sum_probs=45.0
Q ss_pred CccCCCCCHHHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHHh
Q 025602 68 DIKRGNFSKDEEDLVIRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTK 115 (250)
Q Consensus 68 ~l~~~~WT~eEd~~Ll~~~~~~g~~W~~Ia~~lpgRT~~~~knrw~~~ 115 (250)
...+++||.|||.+|++++.+||.+|..||++|++||+.||+.||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456889999999999999999999999999999999999999999765
No 49
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.34 E-value=1.3e-13 Score=99.61 Aligned_cols=52 Identities=15% Similarity=0.390 Sum_probs=48.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CCccchhhhcCCcccccccccccccccc
Q 025602 14 EGLNRGAWKAVEDKILTDYIKAYGE---GKWRHIPKAAGLKRCGKSCRLRWMNYLR 66 (250)
Q Consensus 14 ~~i~kg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~ 66 (250)
+.+.+++||+|||++|+.+|..||. .+|..||+.|| +||+.||+.||.+++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 6789999999999999999999993 48999999999 9999999999998764
No 50
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.34 E-value=1.9e-12 Score=90.04 Aligned_cols=49 Identities=27% Similarity=0.443 Sum_probs=45.6
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHh---hhCCCCCHHHHHHHHHHhhhh
Q 025602 70 KRGNFSKDEEDLVIRLHKLLGNRWALIA---GRLPGRTDNDIKNYWNTKLSK 118 (250)
Q Consensus 70 ~~~~WT~eEd~~Ll~~~~~~g~~W~~Ia---~~lpgRT~~~~knrw~~~l~k 118 (250)
++.+||+||++.|++.|++||.+|..|+ .++++||..+||+||+.++++
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 6789999999999999999999999999 578999999999999988764
No 51
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.30 E-value=1.4e-12 Score=113.07 Aligned_cols=55 Identities=24% Similarity=0.527 Sum_probs=49.2
Q ss_pred CCccCCCCCHHHHHHHHHHHHHhCCC------HHHHhhhCCCCCHHHHHHHHHHhhhhhhh
Q 025602 67 PDIKRGNFSKDEEDLVIRLHKLLGNR------WALIAGRLPGRTDNDIKNYWNTKLSKRVD 121 (250)
Q Consensus 67 p~l~~~~WT~eEd~~Ll~~~~~~g~~------W~~Ia~~lpgRT~~~~knrw~~~l~k~~~ 121 (250)
+.+++++||+|||++|+++|+++|++ |..||++|||||+++||+||+.+|++++.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 35778999999999999999999885 99999999999999999999999999876
No 52
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.30 E-value=4e-12 Score=93.95 Aligned_cols=49 Identities=29% Similarity=0.439 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHHHHhCC-CHHHHhhh----CCCCCHHHHHHHHHHhhhhhh
Q 025602 72 GNFSKDEEDLVIRLHKLLGN-RWALIAGR----LPGRTDNDIKNYWNTKLSKRV 120 (250)
Q Consensus 72 ~~WT~eEd~~Ll~~~~~~g~-~W~~Ia~~----lpgRT~~~~knrw~~~l~k~~ 120 (250)
.+||+|||++|+++|++||. +|+.|++. |+|||+.+||+||+++++...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 48999999999999999998 99999996 899999999999999987553
No 53
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.26 E-value=1.4e-11 Score=94.86 Aligned_cols=54 Identities=26% Similarity=0.350 Sum_probs=48.8
Q ss_pred CCccCCCCCHHHHHHHHHHHHHhCC-CHHHHhhhC----CCCCHHHHHHHHHHhhhhhh
Q 025602 67 PDIKRGNFSKDEEDLVIRLHKLLGN-RWALIAGRL----PGRTDNDIKNYWNTKLSKRV 120 (250)
Q Consensus 67 p~l~~~~WT~eEd~~Ll~~~~~~g~-~W~~Ia~~l----pgRT~~~~knrw~~~l~k~~ 120 (250)
+..++++||.|||++|+++|++||. +|+.|++.+ ++||+.+||+||+++++...
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~ 67 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK 67 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 4567899999999999999999998 999999965 89999999999999987543
No 54
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.25 E-value=6.5e-12 Score=98.89 Aligned_cols=55 Identities=29% Similarity=0.419 Sum_probs=50.4
Q ss_pred ccCCccCCCCCHHHHHHHHHHHHHhCC-CHHHHhhh----CCCCCHHHHHHHHHHhhhhh
Q 025602 65 LRPDIKRGNFSKDEEDLVIRLHKLLGN-RWALIAGR----LPGRTDNDIKNYWNTKLSKR 119 (250)
Q Consensus 65 L~p~l~~~~WT~eEd~~Ll~~~~~~g~-~W~~Ia~~----lpgRT~~~~knrw~~~l~k~ 119 (250)
+.+..++++||.|||++|+++|.+||. +|+.|++. |+|||+.+||+||+++++..
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 556778999999999999999999998 99999998 49999999999999999854
No 55
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.24 E-value=9.3e-12 Score=93.85 Aligned_cols=50 Identities=22% Similarity=0.382 Sum_probs=45.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhC----CCHHHHhhhCCCCCHHHHHHHHHHhhhhh
Q 025602 70 KRGNFSKDEEDLVIRLHKLLG----NRWALIAGRLPGRTDNDIKNYWNTKLSKR 119 (250)
Q Consensus 70 ~~~~WT~eEd~~Ll~~~~~~g----~~W~~Ia~~lpgRT~~~~knrw~~~l~k~ 119 (250)
.+++||.|||.+|++++..|| .+|.+||.+|||||.++|++||+.++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 68999999999999999999999887653
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.16 E-value=4.4e-11 Score=94.25 Aligned_cols=54 Identities=28% Similarity=0.430 Sum_probs=48.3
Q ss_pred CCccCCCCCHHHHHHHHHHHHHhCC-CHHHHhhh----CCCCCHHHHHHHHHHhhhhhh
Q 025602 67 PDIKRGNFSKDEEDLVIRLHKLLGN-RWALIAGR----LPGRTDNDIKNYWNTKLSKRV 120 (250)
Q Consensus 67 p~l~~~~WT~eEd~~Ll~~~~~~g~-~W~~Ia~~----lpgRT~~~~knrw~~~l~k~~ 120 (250)
...++++||.|||+.|+++|++||. +|+.|++. |++||..+||+||+++++...
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 3457889999999999999999998 99999997 489999999999999987543
No 57
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.11 E-value=1.2e-11 Score=93.17 Aligned_cols=48 Identities=17% Similarity=0.434 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---CCCccchhhhcCCccccccccccccccc
Q 025602 17 NRGAWKAVEDKILTDYIKAYG---EGKWRHIPKAAGLKRCGKSCRLRWMNYL 65 (250)
Q Consensus 17 ~kg~WT~eED~~L~~~v~~~g---~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L 65 (250)
.+++||+|||++|++++..|| ..+|..||+.|| +||..+|+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 467899999999999999997 347999999999 999999999999864
No 58
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=99.02 E-value=4.6e-10 Score=84.32 Aligned_cols=66 Identities=20% Similarity=0.305 Sum_probs=59.2
Q ss_pred cccccccccccccCCccCCCCCHHHHHHHHHHHHHhCCCHHHHhhhC-----CCCCHHHHHHHHHHhhhhhhhcC
Q 025602 54 GKSCRLRWMNYLRPDIKRGNFSKDEEDLVIRLHKLLGNRWALIAGRL-----PGRTDNDIKNYWNTKLSKRVDAN 123 (250)
Q Consensus 54 ~~qcr~Rw~~~L~p~l~~~~WT~eEd~~Ll~~~~~~g~~W~~Ia~~l-----pgRT~~~~knrw~~~l~k~~~~~ 123 (250)
+.=+.++|.++|.+ .+||.||+..|++|+++|+.+|..|+..+ ++||..+||+||..+.++-+..+
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 35567899999976 89999999999999999999999999999 58999999999999888777654
No 59
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=5e-10 Score=77.87 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=42.9
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHHh
Q 025602 70 KRGNFSKDEEDLVIRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTK 115 (250)
Q Consensus 70 ~~~~WT~eEd~~Ll~~~~~~g~~W~~Ia~~lpgRT~~~~knrw~~~ 115 (250)
..++||++|++++++++..||++|..||.+||+||..+|..+|+..
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLT 56 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 4579999999999999999999999999999999999999999654
No 60
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.95 E-value=1.6e-10 Score=80.24 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=43.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccchhh---hcCCcccccccccccccccc
Q 025602 16 LNRGAWKAVEDKILTDYIKAYGEGKWRHIPK---AAGLKRCGKSCRLRWMNYLR 66 (250)
Q Consensus 16 i~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~---~l~~~Rt~~qcr~Rw~~~L~ 66 (250)
-++.+||+|||+.|+++|++||. +|..|+. .+. +||...+++||++..+
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 36889999999999999999998 9999995 455 9999999999998754
No 61
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=7.2e-10 Score=77.08 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=43.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccchhhhcCCccccccccccccccc
Q 025602 16 LNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYL 65 (250)
Q Consensus 16 i~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L 65 (250)
-..++||+||++++++++..||. +|..||..|+ +|+..||+.+|....
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~-~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLE-RKSVPDCVLYYYLTK 57 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence 35689999999999999999996 9999999999 999999999987643
No 62
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.88 E-value=2.8e-09 Score=76.61 Aligned_cols=50 Identities=18% Similarity=0.269 Sum_probs=44.8
Q ss_pred CccCCCCCHHHHHHHHHHHHHhC----CCHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 025602 68 DIKRGNFSKDEEDLVIRLHKLLG----NRWALIAGRLPGRTDNDIKNYWNTKLSK 118 (250)
Q Consensus 68 ~l~~~~WT~eEd~~Ll~~~~~~g----~~W~~Ia~~lpgRT~~~~knrw~~~l~k 118 (250)
..+.+.||.||+++|.+++..|+ .+|.+||.+| |||..+|++||+.++..
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 34577999999999999999997 5799999998 99999999999887655
No 63
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.83 E-value=5e-09 Score=90.05 Aligned_cols=77 Identities=9% Similarity=0.126 Sum_probs=56.1
Q ss_pred CccchhhhcCCccccccccccccccccCCccCCCCCHHHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 025602 40 KWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLVIRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLSK 118 (250)
Q Consensus 40 ~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~l~~~~WT~eEd~~Ll~~~~~~g~~W~~Ia~~lpgRT~~~~knrw~~~l~k 118 (250)
+|+.+-..|. .++...+ .+++..-...-..++||+||..++++++.+||++|..||+.|++||..||+++|+...++
T Consensus 104 ~~kQ~~~~L~-~~~~~~I-e~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 104 NIKQTNSALK-EKLDGGI-EPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp HHHHHHHHHH-HHSTTTT-GGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHH-HHHHhhc-ccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4555555553 3443222 233331111234679999999999999999999999999999999999999999876654
No 64
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.71 E-value=2e-08 Score=72.18 Aligned_cols=47 Identities=11% Similarity=0.181 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----CHHHHhhhCCCCCHHHHHHHHHHhhh
Q 025602 71 RGNFSKDEEDLVIRLHKLLGN----RWALIAGRLPGRTDNDIKNYWNTKLS 117 (250)
Q Consensus 71 ~~~WT~eEd~~Ll~~~~~~g~----~W~~Ia~~lpgRT~~~~knrw~~~l~ 117 (250)
...||.+|+.+|.+++..|+. +|..||..+||||..+|+.||..+++
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 468999999999999999985 69999999999999999999987744
No 65
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.67 E-value=5.2e-09 Score=75.15 Aligned_cols=51 Identities=14% Similarity=0.246 Sum_probs=44.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC---CCccchhhhcCCccccccccccccccccC
Q 025602 15 GLNRGAWKAVEDKILTDYIKAYGE---GKWRHIPKAAGLKRCGKSCRLRWMNYLRP 67 (250)
Q Consensus 15 ~i~kg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p 67 (250)
..+++.||.|||++|.+++.+|+. .+|..||+.+ +||..+|+.||..+...
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHHh
Confidence 456789999999999999999973 4799999997 59999999999876543
No 66
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.61 E-value=8.5e-09 Score=71.25 Aligned_cols=48 Identities=25% Similarity=0.481 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCCccchhh-hcCCcccccccccccccccc
Q 025602 18 RGAWKAVEDKILTDYIKAY--------GEGKWRHIPK-AAGLKRCGKSCRLRWMNYLR 66 (250)
Q Consensus 18 kg~WT~eED~~L~~~v~~~--------g~~~W~~Ia~-~l~~~Rt~~qcr~Rw~~~L~ 66 (250)
|.+||+|||++|+++|..| |..-|..+++ .++ ++|-.+||+||.++|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 5689999999999999999 5556999999 787 9999999999999875
No 67
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.61 E-value=3.1e-08 Score=93.99 Aligned_cols=43 Identities=14% Similarity=0.363 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHH
Q 025602 72 GNFSKDEEDLVIRLHKLLGNRWALIAGRLPGRTDNDIKNYWNT 114 (250)
Q Consensus 72 ~~WT~eEd~~Ll~~~~~~g~~W~~Ia~~lpgRT~~~~knrw~~ 114 (250)
.+||.+|-.++++++.+||++|..||..+++||..||+++|..
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~ 423 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVN 423 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999864
No 68
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.56 E-value=1.8e-08 Score=72.34 Aligned_cols=49 Identities=22% Similarity=0.458 Sum_probs=43.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CCccchhhhcCCccccccccccccccccC
Q 025602 18 RGAWKAVEDKILTDYIKAYGE---GKWRHIPKAAGLKRCGKSCRLRWMNYLRP 67 (250)
Q Consensus 18 kg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p 67 (250)
...||.+|+++|.+++..|+. ++|..||..+| +||..+|+.||...+.-
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHhc
Confidence 357999999999999999975 57999999999 89999999999987653
No 69
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.48 E-value=4.3e-08 Score=84.28 Aligned_cols=48 Identities=21% Similarity=0.455 Sum_probs=44.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccchhhhcCCcccccccccccccccc
Q 025602 17 NRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLR 66 (250)
Q Consensus 17 ~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~ 66 (250)
..++||+||++++++++.+||. +|..||+.++ +||..||+.+|.++.+
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4679999999999999999997 9999999999 9999999999998764
No 70
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.28 E-value=1e-06 Score=65.24 Aligned_cols=46 Identities=9% Similarity=0.343 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHHHHhCC---CHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 025602 73 NFSKDEEDLVIRLHKLLGN---RWALIAGRLPGRTDNDIKNYWNTKLSK 118 (250)
Q Consensus 73 ~WT~eEd~~Ll~~~~~~g~---~W~~Ia~~lpgRT~~~~knrw~~~l~k 118 (250)
-||.|||+.||..+++-|. .|..||+.|.+|+.+||++||+.+|+-
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 6999999999999999987 899999999999999999999988863
No 71
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.28 E-value=9.8e-07 Score=60.79 Aligned_cols=47 Identities=19% Similarity=0.329 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CC-CHHHHhh-hCCCCCHHHHHHHHHHhhh
Q 025602 71 RGNFSKDEEDLVIRLHKLL--------GN-RWALIAG-RLPGRTDNDIKNYWNTKLS 117 (250)
Q Consensus 71 ~~~WT~eEd~~Ll~~~~~~--------g~-~W~~Ia~-~lpgRT~~~~knrw~~~l~ 117 (250)
+.+||.|||.+|++.|.++ |+ -|.++++ .+|++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 44 4999999 7999999999999987664
No 72
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=1.9e-06 Score=60.02 Aligned_cols=48 Identities=13% Similarity=0.252 Sum_probs=44.3
Q ss_pred cCCccCCCCCHHHHHHHHHHHHHhCCCHHHHhh-hCCCCCHHHHHHHHH
Q 025602 66 RPDIKRGNFSKDEEDLVIRLHKLLGNRWALIAG-RLPGRTDNDIKNYWN 113 (250)
Q Consensus 66 ~p~l~~~~WT~eEd~~Ll~~~~~~g~~W~~Ia~-~lpgRT~~~~knrw~ 113 (250)
.|.+....||++|-.+..+++..||.+|..|++ .||+||..+|...|+
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHh
Confidence 367788899999999999999999999999999 589999999999885
No 73
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.17 E-value=3.1e-07 Score=65.63 Aligned_cols=44 Identities=11% Similarity=0.302 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC---CccchhhhcCCcccccccccccc
Q 025602 18 RGAWKAVEDKILTDYIKAYGEG---KWRHIPKAAGLKRCGKSCRLRWM 62 (250)
Q Consensus 18 kg~WT~eED~~L~~~v~~~g~~---~W~~Ia~~l~~~Rt~~qcr~Rw~ 62 (250)
.+.||.+|+++|..++..|+.+ +|.+||..+| |||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 4579999999999999999753 7999999999 999999999985
No 74
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.14 E-value=3.8e-07 Score=65.15 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----CHHHHhhhCCCCCHHHHHHHHH
Q 025602 71 RGNFSKDEEDLVIRLHKLLGN----RWALIAGRLPGRTDNDIKNYWN 113 (250)
Q Consensus 71 ~~~WT~eEd~~Ll~~~~~~g~----~W~~Ia~~lpgRT~~~~knrw~ 113 (250)
..+||.+|+++|..++..|+. +|.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999985 7999999999999999999883
No 75
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.42 E-value=3.1e-07 Score=64.47 Aligned_cols=44 Identities=11% Similarity=0.375 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHHhCC---CHHHHhhhCCCCCHHHHHHHHHHhhh
Q 025602 73 NFSKDEEDLVIRLHKLLGN---RWALIAGRLPGRTDNDIKNYWNTKLS 117 (250)
Q Consensus 73 ~WT~eEd~~Ll~~~~~~g~---~W~~Ia~~lpgRT~~~~knrw~~~l~ 117 (250)
.||.|||+.||..+++-|. .|..||..| +||++||++||..+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 5999999999999999997 899999999 9999999999988775
No 76
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.11 E-value=2.5e-06 Score=76.72 Aligned_cols=99 Identities=17% Similarity=0.242 Sum_probs=79.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccchhhhcCCccccccccc-------ccccc---------------------------
Q 025602 19 GAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRL-------RWMNY--------------------------- 64 (250)
Q Consensus 19 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~-------Rw~~~--------------------------- 64 (250)
+.||..+...++.++.+||..+|..||..|+ +++...++. ||..+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999998 888887751 11000
Q ss_pred -------------c---cCCccCCCCCHHHHHHHHHHHHHhCC----CHHHHhh------------hCCCCCHHHHHHHH
Q 025602 65 -------------L---RPDIKRGNFSKDEEDLVIRLHKLLGN----RWALIAG------------RLPGRTDNDIKNYW 112 (250)
Q Consensus 65 -------------L---~p~l~~~~WT~eEd~~Ll~~~~~~g~----~W~~Ia~------------~lpgRT~~~~knrw 112 (250)
| .+..+...||++||..||-++.+||- .|..|.. ++..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 0 01123457999999999999999995 6999962 34679999999999
Q ss_pred HHhhhh
Q 025602 113 NTKLSK 118 (250)
Q Consensus 113 ~~~l~k 118 (250)
+++|+-
T Consensus 270 ~tLi~~ 275 (304)
T 1ofc_X 270 NTLITL 275 (304)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998864
No 77
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=98.02 E-value=1.5e-05 Score=59.48 Aligned_cols=60 Identities=22% Similarity=0.371 Sum_probs=50.9
Q ss_pred cccccccCCccCCCCCHHHHHHHHHHHHHhCCCHHHHhhhCC-----CCCHHHHHHHHHHhhhhhhhcC
Q 025602 60 RWMNYLRPDIKRGNFSKDEEDLVIRLHKLLGNRWALIAGRLP-----GRTDNDIKNYWNTKLSKRVDAN 123 (250)
Q Consensus 60 Rw~~~L~p~l~~~~WT~eEd~~Ll~~~~~~g~~W~~Ia~~lp-----gRT~~~~knrw~~~l~k~~~~~ 123 (250)
.|..+|. ...||.||...|++|+++|.-+|..|+..+. .||-.++|.||.++.++-+..+
T Consensus 23 EY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 23 EYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 4445554 3689999999999999999999999999873 7999999999999888776653
No 78
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.96 E-value=3.7e-06 Score=58.52 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=44.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCccchhh-hcCCccccccccccccc
Q 025602 14 EGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPK-AAGLKRCGKSCRLRWMN 63 (250)
Q Consensus 14 ~~i~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~-~l~~~Rt~~qcr~Rw~~ 63 (250)
|.+....||+||-++..+++.+||. +|..|++ .++ +|+..+|...|..
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYYY 53 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHhc
Confidence 7888899999999999999999998 9999999 488 9999999887764
No 79
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.83 E-value=4.9e-05 Score=53.91 Aligned_cols=43 Identities=21% Similarity=0.236 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHhh-hCCCCCHHHHHHHHH
Q 025602 71 RGNFSKDEEDLVIRLHKLLGNRWALIAG-RLPGRTDNDIKNYWN 113 (250)
Q Consensus 71 ~~~WT~eEd~~Ll~~~~~~g~~W~~Ia~-~lpgRT~~~~knrw~ 113 (250)
..+||++|-.+..+++..||.+|..|++ .||+||..+|...|.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 4589999999999999999999999999 599999999999986
No 80
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.79 E-value=7.4e-06 Score=61.35 Aligned_cols=50 Identities=20% Similarity=0.303 Sum_probs=43.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccchhhhcC----Ccccccccccccccccc
Q 025602 16 LNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAG----LKRCGKSCRLRWMNYLR 66 (250)
Q Consensus 16 i~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~----~~Rt~~qcr~Rw~~~L~ 66 (250)
+...+||.||+..|++++.+|+. +|..|+..+. .+||..+++.||..+.+
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 44589999999999999999998 9999999993 27999999999987643
No 81
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.79 E-value=3.8e-05 Score=57.60 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHH
Q 025602 71 RGNFSKDEEDLVIRLHKLLGNRWALIAGRLPGRTDNDIKNYWNT 114 (250)
Q Consensus 71 ~~~WT~eEd~~Ll~~~~~~g~~W~~Ia~~lpgRT~~~~knrw~~ 114 (250)
...||++|.++..+++..||++|..|+..||+||..+|-..|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 45899999999999999999999999999999999999998853
No 82
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.66 E-value=1.6e-05 Score=75.46 Aligned_cols=46 Identities=20% Similarity=0.457 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccchhhhcCCcccccccccccccc
Q 025602 17 NRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNY 64 (250)
Q Consensus 17 ~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~ 64 (250)
...+||.||-+++++++.+||. +|..||..++ +|+..||+.+|.++
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNY 424 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4689999999999999999998 9999999999 99999999998765
No 83
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.46 E-value=4.5e-05 Score=57.23 Aligned_cols=44 Identities=11% Similarity=0.231 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccchhhhcCCccccccccccccc
Q 025602 18 RGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMN 63 (250)
Q Consensus 18 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~ 63 (250)
...||+||.+++.+.+..||. +|..||+.|+ +|+..+|...|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~-~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcC-CCCHHHHHHHHhc
Confidence 467999999999999999997 9999999999 9999999987754
No 84
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.42 E-value=5.5e-05 Score=53.65 Aligned_cols=44 Identities=16% Similarity=0.253 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccchhh-hcCCccccccccccccc
Q 025602 18 RGAWKAVEDKILTDYIKAYGEGKWRHIPK-AAGLKRCGKSCRLRWMN 63 (250)
Q Consensus 18 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~-~l~~~Rt~~qcr~Rw~~ 63 (250)
...||+||-++..+++.+||. +|..|++ .|+ +|+..+|...|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 457999999999999999998 9999999 588 9999999988764
No 85
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.25 E-value=3.6e-05 Score=56.47 Aligned_cols=49 Identities=22% Similarity=0.519 Sum_probs=40.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---------CCccchhhhc---CCccccccccccccccc
Q 025602 17 NRGAWKAVEDKILTDYIKAYGE---------GKWRHIPKAA---GLKRCGKSCRLRWMNYL 65 (250)
Q Consensus 17 ~kg~WT~eED~~L~~~v~~~g~---------~~W~~Ia~~l---~~~Rt~~qcr~Rw~~~L 65 (250)
+...||.+|-.+|+++...... .-|..||..| |..|++.||+.+|.+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4678999999999999976321 1599999886 46899999999998854
No 86
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.16 E-value=0.00011 Score=54.34 Aligned_cols=47 Identities=13% Similarity=0.283 Sum_probs=41.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC--CCccchhhhcCCcccccccccccccc
Q 025602 17 NRGAWKAVEDKILTDYIKAYGE--GKWRHIPKAAGLKRCGKSCRLRWMNY 64 (250)
Q Consensus 17 ~kg~WT~eED~~L~~~v~~~g~--~~W~~Ia~~l~~~Rt~~qcr~Rw~~~ 64 (250)
+=-.||.|||..|+....+-|. ..|..||+.|+ +|++.|+.+|++..
T Consensus 32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL 80 (95)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred EEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence 3457999999999999999875 47999999998 99999999999864
No 87
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.11 E-value=0.00031 Score=51.33 Aligned_cols=48 Identities=17% Similarity=0.417 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----------CHHHHhhhCC----CCCHHHHHHHHHHhhhh
Q 025602 71 RGNFSKDEEDLVIRLHKLLGN----------RWALIAGRLP----GRTDNDIKNYWNTKLSK 118 (250)
Q Consensus 71 ~~~WT~eEd~~Ll~~~~~~g~----------~W~~Ia~~lp----gRT~~~~knrw~~~l~k 118 (250)
...||.+|-.+||+++.++.. .|..||..|. .||+.||+.+|.++.+.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 467999999999999987421 4999999873 69999999999876554
No 88
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.94 E-value=0.0022 Score=58.96 Aligned_cols=102 Identities=17% Similarity=0.276 Sum_probs=76.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccchhhhcCCcccccccccccccc----------------------------------
Q 025602 19 GAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNY---------------------------------- 64 (250)
Q Consensus 19 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~---------------------------------- 64 (250)
+.||.-+=..++.++.+||..+-..||..|+.+++...++ +|...
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999988999999985456666555 11110
Q ss_pred --------------c----cCC-ccCCCCCHHHHHHHHHHHHHhCC----CHHHHhhh------------CCCCCHHHHH
Q 025602 65 --------------L----RPD-IKRGNFSKDEEDLVIRLHKLLGN----RWALIAGR------------LPGRTDNDIK 109 (250)
Q Consensus 65 --------------L----~p~-l~~~~WT~eEd~~Ll~~~~~~g~----~W~~Ia~~------------lpgRT~~~~k 109 (250)
| .+. -+...||++||..||-++.+||- .|..|-.. +..||+.+|.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 0 000 02346999999999999999984 69999443 3579999999
Q ss_pred HHHHHhhhhhhh
Q 025602 110 NYWNTKLSKRVD 121 (250)
Q Consensus 110 nrw~~~l~k~~~ 121 (250)
.|.+++|+--.+
T Consensus 283 rRc~tLi~~IeK 294 (374)
T 2y9y_A 283 RRGNTLLQCLEK 294 (374)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999865433
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.96 E-value=0.00014 Score=51.00 Aligned_cols=46 Identities=9% Similarity=0.221 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CCccchhhhcCCcccccccccccccccc
Q 025602 19 GAWKAVEDKILTDYIKAYGE--GKWRHIPKAAGLKRCGKSCRLRWMNYLR 66 (250)
Q Consensus 19 g~WT~eED~~L~~~v~~~g~--~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~ 66 (250)
-.||.|||..|+..+.+-|. ..|..||+.| +|++.|+.+||+..+.
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 46999999999999999886 4699999988 6999999999987653
No 90
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.55 E-value=0.0032 Score=52.98 Aligned_cols=100 Identities=12% Similarity=0.165 Sum_probs=66.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhC--CCCccchhhh--cCCccccccccc-------cccc----------------------
Q 025602 17 NRGAWKAVEDKILTDYIKAYG--EGKWRHIPKA--AGLKRCGKSCRL-------RWMN---------------------- 63 (250)
Q Consensus 17 ~kg~WT~eED~~L~~~v~~~g--~~~W~~Ia~~--l~~~Rt~~qcr~-------Rw~~---------------------- 63 (250)
....||..|-..|+.++.+|| .++|..|+.. |. +++...+.. ++..
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~-~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~ 84 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELV-DKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGP 84 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCT-TSCHHHHHHHHHHHHHHHHHHHC-----------------CC
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccch
Confidence 456799999999999999999 5789999865 33 455444331 0000
Q ss_pred ----------------------ccc--------------------CCccCCCCCHHHHHHHHHHHHHhC-CCHHHHhhh-
Q 025602 64 ----------------------YLR--------------------PDIKRGNFSKDEEDLVIRLHKLLG-NRWALIAGR- 99 (250)
Q Consensus 64 ----------------------~L~--------------------p~l~~~~WT~eEd~~Ll~~~~~~g-~~W~~Ia~~- 99 (250)
.|+ +..-...||.+||..||..+.+|| .+|..|-.-
T Consensus 85 ~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~ 164 (211)
T 4b4c_A 85 TFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDP 164 (211)
T ss_dssp EEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCS
T ss_pred hhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhCh
Confidence 000 000123599999999999999999 699999552
Q ss_pred -C--C--------C--CCHHHHHHHHHHhhh
Q 025602 100 -L--P--------G--RTDNDIKNYWNTKLS 117 (250)
Q Consensus 100 -l--p--------g--RT~~~~knrw~~~l~ 117 (250)
| . . ++...+..|...+|+
T Consensus 165 ~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 165 DLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp SSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred hcCccccccccccccCCChHHHHHHHHHHHH
Confidence 1 1 2 455678888766554
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.98 E-value=0.0031 Score=46.99 Aligned_cols=49 Identities=20% Similarity=0.313 Sum_probs=42.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccchhhhcC----Cccccccccccccccc
Q 025602 16 LNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAG----LKRCGKSCRLRWMNYL 65 (250)
Q Consensus 16 i~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~----~~Rt~~qcr~Rw~~~L 65 (250)
++...||.||...|.+++.+|.- +|-.|+.... ..|+..+.++||..+.
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 44568999999999999999998 8999999874 2689999999988764
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.61 E-value=0.1 Score=36.06 Aligned_cols=46 Identities=11% Similarity=0.045 Sum_probs=39.5
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCC---HHHHhhhC--CCCCHHHHHHHHHHh
Q 025602 70 KRGNFSKDEEDLVIRLHKLLGNR---WALIAGRL--PGRTDNDIKNYWNTK 115 (250)
Q Consensus 70 ~~~~WT~eEd~~Ll~~~~~~g~~---W~~Ia~~l--pgRT~~~~knrw~~~ 115 (250)
.+-.||+|.-+..++++.++|.. +..|.+.| +|.|..+|+.|...+
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 45689999999999999999964 78998886 799999999887543
No 93
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.47 E-value=0.033 Score=46.65 Aligned_cols=30 Identities=30% Similarity=0.452 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccchhhh
Q 025602 18 RGAWKAVEDKILTDYIKAYGEGKWRHIPKA 47 (250)
Q Consensus 18 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~ 47 (250)
...||++||..|+..|.+||-|+|..|-.-
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 446999999999999999999999999764
No 94
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=93.14 E-value=0.16 Score=45.49 Aligned_cols=45 Identities=18% Similarity=0.270 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHHHHhCC-CHHHHhhhCCCCCHHHHHHHHHHhh
Q 025602 72 GNFSKDEEDLVIRLHKLLGN-RWALIAGRLPGRTDNDIKNYWNTKL 116 (250)
Q Consensus 72 ~~WT~eEd~~Ll~~~~~~g~-~W~~Ia~~lpgRT~~~~knrw~~~l 116 (250)
+.||..+....+.++.+||. +|..||..|+|+|..+|+.++...+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw 156 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFW 156 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 47999999999999999998 8999999999999999977765444
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=92.50 E-value=0.068 Score=47.11 Aligned_cols=29 Identities=31% Similarity=0.583 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccchhhh
Q 025602 19 GAWKAVEDKILTDYIKAYGEGKWRHIPKA 47 (250)
Q Consensus 19 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~ 47 (250)
..|+.+||..|+..|-+||.|+|..|..-
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~D 197 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDD 197 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence 45999999999999999999999999653
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=90.33 E-value=0.21 Score=34.46 Aligned_cols=49 Identities=10% Similarity=0.047 Sum_probs=36.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCC--CccchhhhcCC-ccccccccccccc
Q 025602 15 GLNRGAWKAVEDKILTDYIKAYGEG--KWRHIPKAAGL-KRCGKSCRLRWMN 63 (250)
Q Consensus 15 ~i~kg~WT~eED~~L~~~v~~~g~~--~W~~Ia~~l~~-~Rt~~qcr~Rw~~ 63 (250)
.-.+-.||+|..+..+++|+..|.. .+..|.+.|+. +.|..++.-+.+.
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK 55 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK 55 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence 3467789999999999999999952 16788888762 4566666655444
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=80.07 E-value=3.8 Score=35.84 Aligned_cols=48 Identities=13% Similarity=0.191 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CHHHHhhh--CCCCCHHHHHHHHHHhhhh
Q 025602 71 RGNFSKDEEDLVIRLHKLLGN---RWALIAGR--LPGRTDNDIKNYWNTKLSK 118 (250)
Q Consensus 71 ~~~WT~eEd~~Ll~~~~~~g~---~W~~Ia~~--lpgRT~~~~knrw~~~l~k 118 (250)
+++||..|-..|++++.+||. +|..|+.. |+.++...++.-++.++..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 578999999999999999994 89999765 7899999999988876643
No 98
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=72.90 E-value=2.6 Score=38.67 Aligned_cols=32 Identities=16% Similarity=0.327 Sum_probs=28.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CCccchhhhc
Q 025602 17 NRGAWKAVEDKILTDYIKAYGE---GKWRHIPKAA 48 (250)
Q Consensus 17 ~kg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l 48 (250)
++..||.+||..|+-++.+||- ++|..|-..+
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~I 261 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEI 261 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4668999999999999999998 8999997665
No 99
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=69.60 E-value=2.2 Score=32.82 Aligned_cols=46 Identities=13% Similarity=0.247 Sum_probs=33.7
Q ss_pred CCccchhhhcCCcccc----ccccccccccccCCccCCCCCHHHHHHHHHHHH
Q 025602 39 GKWRHIPKAAGLKRCG----KSCRLRWMNYLRPDIKRGNFSKDEEDLVIRLHK 87 (250)
Q Consensus 39 ~~W~~Ia~~l~~~Rt~----~qcr~Rw~~~L~p~l~~~~WT~eEd~~Ll~~~~ 87 (250)
+.|..||..|+...+. ...+..|.++|.|- ...+++|-..|.+-|.
T Consensus 64 k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 64 KKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp TCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 4699999999865433 45678899988762 2378888888876654
No 100
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=65.71 E-value=8.5 Score=25.11 Aligned_cols=40 Identities=20% Similarity=0.188 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHHhhh
Q 025602 77 DEEDLVIRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLS 117 (250)
Q Consensus 77 eEd~~Ll~~~~~~g~~W~~Ia~~lpgRT~~~~knrw~~~l~ 117 (250)
+.+..++.++-..|..+.+||..+ |-|...|+.+.+..++
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~ 57 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARD 57 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 455566666667788999999999 8899999988765443
No 101
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=63.84 E-value=2.2 Score=32.41 Aligned_cols=39 Identities=13% Similarity=0.328 Sum_probs=29.9
Q ss_pred HHHHHHHHhCC-------CCccchhhhcCCccccccccccccccccC
Q 025602 28 ILTDYIKAYGE-------GKWRHIPKAAGLKRCGKSCRLRWMNYLRP 67 (250)
Q Consensus 28 ~L~~~v~~~g~-------~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p 67 (250)
.|..+|.+.|- +.|..||..|+... +..++..|.++|-|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 46777777662 47999999998544 78888888888765
No 102
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=62.96 E-value=10 Score=25.41 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHH----hCCCHHHHhhhCCCCCHHHHHHHHHHhhh
Q 025602 77 DEEDLVIRLHKL----LGNRWALIAGRLPGRTDNDIKNYWNTKLS 117 (250)
Q Consensus 77 eEd~~Ll~~~~~----~g~~W~~Ia~~lpgRT~~~~knrw~~~l~ 117 (250)
+.+..++.+.-- .|..+.+||..| |-|...|+.+....++
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~ 56 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALR 56 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 445555555554 577999999999 8999999998765554
No 103
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=58.78 E-value=10 Score=25.01 Aligned_cols=40 Identities=15% Similarity=0.131 Sum_probs=29.3
Q ss_pred HHHHHHHHHHH----HhCCCHHHHhhhCCCCCHHHHHHHHHHhhh
Q 025602 77 DEEDLVIRLHK----LLGNRWALIAGRLPGRTDNDIKNYWNTKLS 117 (250)
Q Consensus 77 eEd~~Ll~~~~----~~g~~W~~Ia~~lpgRT~~~~knrw~~~l~ 117 (250)
+.+..++.+.- ..|..+.+||..| |-|...|+.+....++
T Consensus 8 ~~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 8 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALR 51 (68)
T ss_dssp HHHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 34445555544 3477999999999 8999999998766554
No 104
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=58.09 E-value=3.6 Score=30.57 Aligned_cols=40 Identities=18% Similarity=0.355 Sum_probs=28.5
Q ss_pred HHHHHHHHhCC-------CCccchhhhcCCccc----cccccccccccccC
Q 025602 28 ILTDYIKAYGE-------GKWRHIPKAAGLKRC----GKSCRLRWMNYLRP 67 (250)
Q Consensus 28 ~L~~~v~~~g~-------~~W~~Ia~~l~~~Rt----~~qcr~Rw~~~L~p 67 (250)
.|..+|.+.|- +.|..||..|+...+ +.+++..|.++|.+
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46667776652 479999999985442 35677788888765
No 105
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=56.11 E-value=3.2 Score=31.53 Aligned_cols=40 Identities=15% Similarity=0.331 Sum_probs=27.9
Q ss_pred HHHHHHHHhCC-------CCccchhhhcCCccc---cccccccccccccC
Q 025602 28 ILTDYIKAYGE-------GKWRHIPKAAGLKRC---GKSCRLRWMNYLRP 67 (250)
Q Consensus 28 ~L~~~v~~~g~-------~~W~~Ia~~l~~~Rt---~~qcr~Rw~~~L~p 67 (250)
.|..+|.+.|- +.|..||..|+...+ +.+.+..|.++|.|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 57777777762 479999999985443 34566777777654
No 106
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=55.34 E-value=6.7 Score=30.89 Aligned_cols=56 Identities=30% Similarity=0.440 Sum_probs=35.8
Q ss_pred HHHHHHHHhCC-------CCccchhhhcCCccc----cccccccccccccC--CccCCCCCHHHHHHHH
Q 025602 28 ILTDYIKAYGE-------GKWRHIPKAAGLKRC----GKSCRLRWMNYLRP--DIKRGNFSKDEEDLVI 83 (250)
Q Consensus 28 ~L~~~v~~~g~-------~~W~~Ia~~l~~~Rt----~~qcr~Rw~~~L~p--~l~~~~WT~eEd~~Ll 83 (250)
.|..+|.+.|- +.|..||..|+...+ +.+++..|.++|-| ...+|.=+++|-+.-+
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~~~~~ 136 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAI 136 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 46666666652 479999999985442 34677888888876 3344554555544433
No 107
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=53.40 E-value=12 Score=28.21 Aligned_cols=38 Identities=18% Similarity=0.361 Sum_probs=28.6
Q ss_pred HHHHHHHHhC--------CCHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 025602 81 LVIRLHKLLG--------NRWALIAGRLPGRTDNDIKNYWNTKLSK 118 (250)
Q Consensus 81 ~Ll~~~~~~g--------~~W~~Ia~~lpgRT~~~~knrw~~~l~k 118 (250)
.|..+|.+.| +.|..|+..|.--....++..|..+|-.
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 4667777776 4799999998433378899999888754
No 108
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=52.16 E-value=3.6 Score=31.65 Aligned_cols=40 Identities=30% Similarity=0.473 Sum_probs=28.4
Q ss_pred HHHHHHHHhCC-------CCccchhhhcCCccc----cccccccccccccC
Q 025602 28 ILTDYIKAYGE-------GKWRHIPKAAGLKRC----GKSCRLRWMNYLRP 67 (250)
Q Consensus 28 ~L~~~v~~~g~-------~~W~~Ia~~l~~~Rt----~~qcr~Rw~~~L~p 67 (250)
.|..+|.+.|- +.|..||..|+...+ +..++..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46677777662 479999999985443 34567778887765
No 109
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=49.83 E-value=21 Score=24.97 Aligned_cols=38 Identities=26% Similarity=0.240 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHHhh
Q 025602 78 EEDLVIRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKL 116 (250)
Q Consensus 78 Ed~~Ll~~~~~~g~~W~~Ia~~lpgRT~~~~knrw~~~l 116 (250)
.+..++.++-..|..-.+||..| |-+...|+.+....+
T Consensus 41 ~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~ 78 (92)
T 3hug_A 41 EHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAV 78 (92)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 44556666666678899999999 889999998876544
No 110
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=49.82 E-value=26 Score=26.34 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=27.5
Q ss_pred HHHHHHHHhC--------CCHHHHhhhCCCC--C--HHHHHHHHHHhhhh
Q 025602 81 LVIRLHKLLG--------NRWALIAGRLPGR--T--DNDIKNYWNTKLSK 118 (250)
Q Consensus 81 ~Ll~~~~~~g--------~~W~~Ia~~lpgR--T--~~~~knrw~~~l~k 118 (250)
.|..+|.+.| +.|.+|+..|.-- + ...+|..|..+|..
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 4667777776 4799999998221 2 45789999888754
No 111
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=49.76 E-value=4.9 Score=29.16 Aligned_cols=40 Identities=23% Similarity=0.420 Sum_probs=26.4
Q ss_pred HHHHHHHHhC-------CCCccchhhhcCCccc---cccccccccccccC
Q 025602 28 ILTDYIKAYG-------EGKWRHIPKAAGLKRC---GKSCRLRWMNYLRP 67 (250)
Q Consensus 28 ~L~~~v~~~g-------~~~W~~Ia~~l~~~Rt---~~qcr~Rw~~~L~p 67 (250)
.|..+|.+.| .+.|..||..|+...+ +.+++..|.++|.|
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 4566666654 1479999999985442 34667777777653
No 112
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=49.21 E-value=4.3 Score=31.15 Aligned_cols=40 Identities=23% Similarity=0.429 Sum_probs=26.8
Q ss_pred HHHHHHHHhCC-------CCccchhhhcCCccc---cccccccccccccC
Q 025602 28 ILTDYIKAYGE-------GKWRHIPKAAGLKRC---GKSCRLRWMNYLRP 67 (250)
Q Consensus 28 ~L~~~v~~~g~-------~~W~~Ia~~l~~~Rt---~~qcr~Rw~~~L~p 67 (250)
.|..+|.+.|- +.|..||..|+...+ +.+++..|.++|.|
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 46667776652 479999999985542 34556667766643
No 113
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=48.84 E-value=32 Score=25.17 Aligned_cols=38 Identities=21% Similarity=0.377 Sum_probs=26.7
Q ss_pred HHHHHHHHhC--------CCHHHHhhhCCCC-C---HHHHHHHHHHhhhh
Q 025602 81 LVIRLHKLLG--------NRWALIAGRLPGR-T---DNDIKNYWNTKLSK 118 (250)
Q Consensus 81 ~Ll~~~~~~g--------~~W~~Ia~~lpgR-T---~~~~knrw~~~l~k 118 (250)
.|..+|.+.| +.|.+|+..|.-- + ...++..|..+|-.
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 4666666666 4799999998322 2 46788889887754
No 114
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=48.04 E-value=12 Score=30.25 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=20.3
Q ss_pred CCCCCCCCCHHHHHHHH--------HHHHHhCC
Q 025602 14 EGLNRGAWKAVEDKILT--------DYIKAYGE 38 (250)
Q Consensus 14 ~~i~kg~WT~eED~~L~--------~~v~~~g~ 38 (250)
|.-.+|-||+|+|+.|. .++++||.
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG~ 142 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGT 142 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHCH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhCH
Confidence 55678999999999875 57788874
No 115
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=47.92 E-value=4.2 Score=30.15 Aligned_cols=40 Identities=18% Similarity=0.414 Sum_probs=26.7
Q ss_pred HHHHHHHHhCC-------CCccchhhhcCCccc---cccccccccccccC
Q 025602 28 ILTDYIKAYGE-------GKWRHIPKAAGLKRC---GKSCRLRWMNYLRP 67 (250)
Q Consensus 28 ~L~~~v~~~g~-------~~W~~Ia~~l~~~Rt---~~qcr~Rw~~~L~p 67 (250)
.|..+|.+.|- +.|..||..|+...+ +.+.+..|.++|-|
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 56677777762 479999999985442 34566667666543
No 116
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=47.63 E-value=5.4 Score=30.48 Aligned_cols=39 Identities=23% Similarity=0.400 Sum_probs=25.4
Q ss_pred HHHHHHHHhCC-------CCccchhhhcCCccc---ccccccccccccc
Q 025602 28 ILTDYIKAYGE-------GKWRHIPKAAGLKRC---GKSCRLRWMNYLR 66 (250)
Q Consensus 28 ~L~~~v~~~g~-------~~W~~Ia~~l~~~Rt---~~qcr~Rw~~~L~ 66 (250)
+|..+|.+.|- +.|..|+..|+...+ +...+..|.++|.
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~ 94 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILN 94 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhH
Confidence 46677777762 479999999985432 2345555666554
No 117
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=46.98 E-value=8.8 Score=27.71 Aligned_cols=45 Identities=22% Similarity=0.606 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhCCCCccchhhhcCCccccccccccccccccCCcc-------CCCCCHHHHHHHH
Q 025602 26 DKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIK-------RGNFSKDEEDLVI 83 (250)
Q Consensus 26 D~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~l~-------~~~WT~eEd~~Ll 83 (250)
+.+|.++|..|| |...+..+. -| |+. .+|+++ +.+|..+.-+.|.
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~-I~----CF~-----~~PSikSSLKFLRKTpWAR~KVE~lY 69 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVN-IN----CFK-----KDPSIKSSLKFLRKTDWARERVENIY 69 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTT-SS----STT-----SSCCHHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcc-cc----cCC-----CCCchHHHHHHHhcCHhHHHHHHHHH
Confidence 678999999998 999998886 33 332 355543 6789888766654
No 118
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=44.93 E-value=34 Score=25.90 Aligned_cols=38 Identities=18% Similarity=0.310 Sum_probs=27.2
Q ss_pred HHHHHHHHhC--------CCHHHHhhhCCCC--C--HHHHHHHHHHhhhh
Q 025602 81 LVIRLHKLLG--------NRWALIAGRLPGR--T--DNDIKNYWNTKLSK 118 (250)
Q Consensus 81 ~Ll~~~~~~g--------~~W~~Ia~~lpgR--T--~~~~knrw~~~l~k 118 (250)
.|..+|.++| +.|.+|+..|.-- + ...+|..|..+|-.
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 4666777776 4799999998321 2 35789999888865
No 119
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=44.83 E-value=38 Score=22.45 Aligned_cols=41 Identities=17% Similarity=0.129 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHHhhh
Q 025602 74 FSKDEEDLVIRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLS 117 (250)
Q Consensus 74 WT~eEd~~Ll~~~~~~g~~W~~Ia~~lpgRT~~~~knrw~~~l~ 117 (250)
.|+.|-+ ++.++ ..|..-.+||..| |-+...|+.+....++
T Consensus 17 L~~~e~~-vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 17 LSERERQ-VLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMA 57 (79)
T ss_dssp HCHHHHH-HHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHH
T ss_pred CCHHHHH-HHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 4554444 44454 5677899999999 8899999988765543
No 120
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=43.77 E-value=38 Score=25.63 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=27.3
Q ss_pred HHHHHHHHhC--------CCHHHHhhhCCCCC----HHHHHHHHHHhhhh
Q 025602 81 LVIRLHKLLG--------NRWALIAGRLPGRT----DNDIKNYWNTKLSK 118 (250)
Q Consensus 81 ~Ll~~~~~~g--------~~W~~Ia~~lpgRT----~~~~knrw~~~l~k 118 (250)
.|..+|.++| +.|.+|+..|.--+ ...+|..|..+|..
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 4666677766 47999999983222 45789999888865
No 121
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=43.30 E-value=39 Score=24.87 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHH
Q 025602 74 FSKDEEDLVIRLHKLLGNRWALIAGRLPGRTDNDIKN 110 (250)
Q Consensus 74 WT~eEd~~Ll~~~~~~g~~W~~Ia~~lpgRT~~~~kn 110 (250)
=+..-+..|..+...+|..|..+|+.| |=+..+|..
T Consensus 13 ~~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 13 GTEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp CSHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred hHhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 356667788888899999999999999 777766544
No 122
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=42.61 E-value=37 Score=23.96 Aligned_cols=46 Identities=24% Similarity=0.275 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHHhhhhhhhc
Q 025602 73 NFSKDEEDLVIRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLSKRVDA 122 (250)
Q Consensus 73 ~WT~eEd~~Ll~~~~~~g~~W~~Ia~~lpgRT~~~~knrw~~~l~k~~~~ 122 (250)
..|+.|-+.|. ++ ..|..-.+||..| |-|...|+.+....+ ++++.
T Consensus 27 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~-~kL~~ 72 (95)
T 3c57_A 27 GLTDQERTLLG-LL-SEGLTNKQIADRM-FLAEKTVKNYVSRLL-AKLGM 72 (95)
T ss_dssp CCCHHHHHHHH-HH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHH-HHHTC
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHH-HHHcC
Confidence 35665555544 45 7788899999999 889999999876654 34443
No 123
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=41.36 E-value=35 Score=23.59 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHH----hCCCHHHHhhhCCCCCHHHHHHHHHHhhh
Q 025602 77 DEEDLVIRLHKL----LGNRWALIAGRLPGRTDNDIKNYWNTKLS 117 (250)
Q Consensus 77 eEd~~Ll~~~~~----~g~~W~~Ia~~lpgRT~~~~knrw~~~l~ 117 (250)
+.+..++.+.-- .|..+.+||..| |-|...|+.+-...++
T Consensus 21 ~~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~ 64 (87)
T 1tty_A 21 PREAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALR 64 (87)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 344555555544 467899999999 8999999988765543
No 124
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=40.04 E-value=40 Score=25.63 Aligned_cols=75 Identities=16% Similarity=0.268 Sum_probs=48.1
Q ss_pred CCCCCHHHH--HHHHHHHHHhCCCCccchhhhcCCccccccccccccccccCCccCCCCCHHHHHHHHHHHHHhC-----
Q 025602 18 RGAWKAVED--KILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLVIRLHKLLG----- 90 (250)
Q Consensus 18 kg~WT~eED--~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~l~~~~WT~eEd~~Ll~~~~~~g----- 90 (250)
+.+|.+.+. +.|...+...|. ....|+. ++ +|.-. =-.|..+|.++|
T Consensus 7 ~~r~~~~~~Fl~~L~~F~~~rGt-pl~~~P~-i~-gk~lD-----------------------L~~Ly~~V~~~GG~~~V 60 (121)
T 2rq5_A 7 GRRWGPNVQRLACIKKHLRSQGI-TMDELPL-IG-GCELD-----------------------LACFFRLINEMGGMQQV 60 (121)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTC-CCSSCCE-ET-TEECC-----------------------HHHHHHHHHHTTSHHHH
T ss_pred hHhcCCcHHHHHHHHHHHHHcCC-CCCCCCc-CC-CEecc-----------------------HHHHHHHHHHcCcHHHh
Confidence 457988765 557777777787 4555542 23 33221 124667777777
Q ss_pred ---CCHHHHhhhC--CCC---CHHHHHHHHHHhhhh
Q 025602 91 ---NRWALIAGRL--PGR---TDNDIKNYWNTKLSK 118 (250)
Q Consensus 91 ---~~W~~Ia~~l--pgR---T~~~~knrw~~~l~k 118 (250)
+.|.+|+..| |.- ....++.+|..+|-.
T Consensus 61 t~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~ 96 (121)
T 2rq5_A 61 TDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS 96 (121)
T ss_dssp HHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH
T ss_pred cccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH
Confidence 4799999998 322 245789999887754
No 125
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=39.93 E-value=42 Score=26.02 Aligned_cols=28 Identities=11% Similarity=0.013 Sum_probs=22.7
Q ss_pred hCCCHHHHhhhCCCCCHHHHHHHHHHhhh
Q 025602 89 LGNRWALIAGRLPGRTDNDIKNYWNTKLS 117 (250)
Q Consensus 89 ~g~~W~~Ia~~lpgRT~~~~knrw~~~l~ 117 (250)
.|-...+||..| |-|...|+.+....++
T Consensus 155 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~ 182 (194)
T 1or7_A 155 DGLSYEEIAAIM-DCPVGTVRSRIFRARE 182 (194)
T ss_dssp TCCCHHHHHHHT-TSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 366899999999 8899999998765443
No 126
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=39.84 E-value=58 Score=22.91 Aligned_cols=45 Identities=16% Similarity=0.112 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 025602 71 RGNFSKDEEDLVIRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLSK 118 (250)
Q Consensus 71 ~~~WT~eEd~~Ll~~~~~~g~~W~~Ia~~lpgRT~~~~knrw~~~l~k 118 (250)
....|+.|-+.|.-++ .|..-.+||..| |-+...|+.+...++++
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3457777776655443 788899999999 88999999998776543
No 127
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=38.36 E-value=39 Score=23.12 Aligned_cols=42 Identities=26% Similarity=0.283 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHHhhh
Q 025602 73 NFSKDEEDLVIRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLS 117 (250)
Q Consensus 73 ~WT~eEd~~Ll~~~~~~g~~W~~Ia~~lpgRT~~~~knrw~~~l~ 117 (250)
..|+.|-+.|. ++ ..|..-.+||..| |-+...|+.+....++
T Consensus 21 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 21 QLTPRERDILK-LI-AQGLPNKMIARRL-DITESTVKVHVKHMLK 62 (82)
T ss_dssp GSCHHHHHHHH-HH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 46666655544 44 5677899999999 8899999988765543
No 128
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=37.88 E-value=42 Score=26.06 Aligned_cols=43 Identities=12% Similarity=0.046 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhCC-CHHHHhhhCCCCCHHHHHHHHHHhhhhhh
Q 025602 77 DEEDLVIRLHKLLGN-RWALIAGRLPGRTDNDIKNYWNTKLSKRV 120 (250)
Q Consensus 77 eEd~~Ll~~~~~~g~-~W~~Ia~~lpgRT~~~~knrw~~~l~k~~ 120 (250)
+-|..|+++.++.|. .+.+||+.+ |=|...|+.|.+.+....+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 457788888887775 899999999 8999999999987766554
No 129
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=37.29 E-value=16 Score=27.83 Aligned_cols=38 Identities=18% Similarity=0.345 Sum_probs=27.5
Q ss_pred HHHHHHHhC--------CCHHHHhhhCCCCCHHHHHHHHHHhhhhh
Q 025602 82 VIRLHKLLG--------NRWALIAGRLPGRTDNDIKNYWNTKLSKR 119 (250)
Q Consensus 82 Ll~~~~~~g--------~~W~~Ia~~lpgRT~~~~knrw~~~l~k~ 119 (250)
|..+|.+.| +.|.+|+..|.--....++..|..+|-.-
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 555555555 26999999973333889999999888653
No 130
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=37.18 E-value=56 Score=24.74 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=28.1
Q ss_pred HHHHHHHHhC--------CCHHHHhhhC--CCC---CHHHHHHHHHHhhhh
Q 025602 81 LVIRLHKLLG--------NRWALIAGRL--PGR---TDNDIKNYWNTKLSK 118 (250)
Q Consensus 81 ~Ll~~~~~~g--------~~W~~Ia~~l--pgR---T~~~~knrw~~~l~k 118 (250)
.|..+|..+| +.|.+|+..| |.. ....+|..|..+|..
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 4667777777 4799999998 332 256789999888865
No 131
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=37.17 E-value=1.3e+02 Score=22.43 Aligned_cols=78 Identities=9% Similarity=0.049 Sum_probs=47.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccchhhhcCCcccccccccccccc------ccCCcc----CCCCCHHHHHHHHHHHH
Q 025602 18 RGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNY------LRPDIK----RGNFSKDEEDLVIRLHK 87 (250)
Q Consensus 18 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~------L~p~l~----~~~WT~eEd~~Ll~~~~ 87 (250)
..+.|.++-..++.++. .|. .-..||..++. +...+ .+|... +.+... ....+.++.+.|++++.
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~-s~~~iA~~lgi--s~~TV-~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 104 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGV-RPCDISRQLRV--SHGCV-SKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKR 104 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTC-CHHHHHHHHTC--CHHHH-HHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCC-CHHHHHHHHCc--CHHHH-HHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 45789988888888874 565 67899999974 33333 233322 222211 23478888888888887
Q ss_pred HhCC-CHHHHhhhC
Q 025602 88 LLGN-RWALIAGRL 100 (250)
Q Consensus 88 ~~g~-~W~~Ia~~l 100 (250)
+... .-.+|+..|
T Consensus 105 ~~~~~s~~~i~~~l 118 (149)
T 1k78_A 105 QNPTMFAWEIRDRL 118 (149)
T ss_dssp HCTTCCHHHHHHHH
T ss_pred hCcchhHHHHHHHH
Confidence 6532 234455444
No 132
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=36.66 E-value=63 Score=20.15 Aligned_cols=37 Identities=16% Similarity=0.075 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHHhhh
Q 025602 79 EDLVIRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLS 117 (250)
Q Consensus 79 d~~Ll~~~~~~g~~W~~Ia~~lpgRT~~~~knrw~~~l~ 117 (250)
+..++.+ -..|..-.+||..| |-+...|+.+....++
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMR 39 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 4455555 35677889999999 8899999998766554
No 133
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=36.37 E-value=47 Score=21.55 Aligned_cols=42 Identities=14% Similarity=0.142 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHHhhh
Q 025602 73 NFSKDEEDLVIRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLS 117 (250)
Q Consensus 73 ~WT~eEd~~Ll~~~~~~g~~W~~Ia~~lpgRT~~~~knrw~~~l~ 117 (250)
..|+.|-+.|.- + ..|..-.+||..+ |-|...|+.+....++
T Consensus 11 ~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 11 LLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQ 52 (74)
T ss_dssp CCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 466666655544 4 5677899999999 8899999988765443
No 134
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=35.17 E-value=48 Score=24.82 Aligned_cols=28 Identities=29% Similarity=0.484 Sum_probs=21.5
Q ss_pred HHHHHHHHhCCCHHHHhhhCCCCCHHHHH
Q 025602 81 LVIRLHKLLGNRWALIAGRLPGRTDNDIK 109 (250)
Q Consensus 81 ~Ll~~~~~~g~~W~~Ia~~lpgRT~~~~k 109 (250)
.|..++..+|..|..+|+.| |=+..+|.
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dId 53 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIY 53 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 45566788999999999998 66666553
No 135
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=34.96 E-value=39 Score=25.25 Aligned_cols=31 Identities=19% Similarity=0.418 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHH
Q 025602 79 EDLVIRLHKLLGNRWALIAGRLPGRTDNDIKN 110 (250)
Q Consensus 79 d~~Ll~~~~~~g~~W~~Ia~~lpgRT~~~~kn 110 (250)
+..|..+...+|..|..+|..| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4567777788999999999999 666666544
No 136
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=34.52 E-value=64 Score=23.67 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHHhh
Q 025602 78 EEDLVIRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKL 116 (250)
Q Consensus 78 Ed~~Ll~~~~~~g~~W~~Ia~~lpgRT~~~~knrw~~~l 116 (250)
.+..++.++-..|-...+||..| |-|...|+.+.+..+
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~ 66 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTG 66 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 44556666666788999999999 889999998866544
No 137
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=34.43 E-value=59 Score=25.32 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=27.8
Q ss_pred HHHHHHHHhC--------CCHHHHhhhC--CCC---CHHHHHHHHHHhhhh
Q 025602 81 LVIRLHKLLG--------NRWALIAGRL--PGR---TDNDIKNYWNTKLSK 118 (250)
Q Consensus 81 ~Ll~~~~~~g--------~~W~~Ia~~l--pgR---T~~~~knrw~~~l~k 118 (250)
.|..+|.+.| +.|.+|+..| |.. ....++..|..+|-.
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 4666777776 4799999998 332 256789999888865
No 138
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=34.33 E-value=1.5e+02 Score=22.39 Aligned_cols=78 Identities=12% Similarity=0.048 Sum_probs=47.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccchhhhcCCcccccccccccccc------ccCCcc----CCCCCHHHHHHHHHHHH
Q 025602 18 RGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNY------LRPDIK----RGNFSKDEEDLVIRLHK 87 (250)
Q Consensus 18 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~------L~p~l~----~~~WT~eEd~~Ll~~~~ 87 (250)
..+.|.++-..++.++. .|. ....||..++. +...+ .||.+. +.+... ....+.++.+.|++++.
T Consensus 23 ~~~~s~e~r~~ii~l~~-~G~-s~~~IA~~lgi--s~~TV-~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 97 (159)
T 2k27_A 23 GRPLPEVVRQRIVDLAH-QGV-RPCDISRQLRV--SHGCV-SKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKR 97 (159)
T ss_dssp SCSSCHHHHHHHHHHHH-HTC-CHHHHHHHHTC--CSHHH-HHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCC-CHHHHHHHHCc--CHHHH-HHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34689888888888874 565 68899999973 33333 334332 222211 23478888888888877
Q ss_pred HhCC-CHHHHhhhC
Q 025602 88 LLGN-RWALIAGRL 100 (250)
Q Consensus 88 ~~g~-~W~~Ia~~l 100 (250)
+... .-.+|+..|
T Consensus 98 ~~~~~s~~~i~~~l 111 (159)
T 2k27_A 98 QNPTMFAWEIRDRL 111 (159)
T ss_dssp HCSSSCHHHHHHHH
T ss_pred HCccchHHHHHHHH
Confidence 6432 334455444
No 139
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=32.14 E-value=47 Score=24.87 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=24.8
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHH
Q 025602 70 KRGNFSKDEEDLVIRLHKLLGNRWALIAGRLPGRTDNDIK 109 (250)
Q Consensus 70 ~~~~WT~eEd~~Ll~~~~~~g~~W~~Ia~~lpgRT~~~~k 109 (250)
-...=|.+ .|..++..+|..|..+|+.| |=+..+|.
T Consensus 18 ~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dId 53 (114)
T 2of5_A 18 LNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIY 53 (114)
T ss_dssp TTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHHH
T ss_pred hcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 33344444 45556788999999999998 66666553
No 140
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=32.06 E-value=29 Score=26.77 Aligned_cols=29 Identities=17% Similarity=0.044 Sum_probs=23.0
Q ss_pred HhCCCHHHHhhhCCCCCHHHHHHHHHHhhh
Q 025602 88 LLGNRWALIAGRLPGRTDNDIKNYWNTKLS 117 (250)
Q Consensus 88 ~~g~~W~~Ia~~lpgRT~~~~knrw~~~l~ 117 (250)
..|-...+||..| |-|...|+++....++
T Consensus 149 ~~g~s~~eIA~~l-gis~~tV~~~l~ra~~ 177 (184)
T 2q1z_A 149 FGDLTHRELAAET-GLPLGTIKSRIRLALD 177 (184)
T ss_dssp HSCCSSCCSTTTC-CCCCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 3466788999999 8899999998866553
No 141
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=31.73 E-value=84 Score=23.64 Aligned_cols=44 Identities=9% Similarity=0.035 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhCC-CHHHHhhhCCCCCHHHHHHHHHHhhhhhhh
Q 025602 77 DEEDLVIRLHKLLGN-RWALIAGRLPGRTDNDIKNYWNTKLSKRVD 121 (250)
Q Consensus 77 eEd~~Ll~~~~~~g~-~W~~Ia~~lpgRT~~~~knrw~~~l~k~~~ 121 (250)
+-|..|+.+....+. .+.+||+.+ |=+...|..+.+.+....+-
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 53 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGII 53 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 446677777777765 899999999 78999999999887766543
No 142
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=31.00 E-value=50 Score=22.90 Aligned_cols=42 Identities=21% Similarity=0.106 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHHhhh
Q 025602 73 NFSKDEEDLVIRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLS 117 (250)
Q Consensus 73 ~WT~eEd~~Ll~~~~~~g~~W~~Ia~~lpgRT~~~~knrw~~~l~ 117 (250)
..|+.|-+.| .++ ..|..-.+||..| |-+...|+.+....++
T Consensus 29 ~Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~ 70 (91)
T 2rnj_A 29 MLTEREMEIL-LLI-AKGYSNQEIASAS-HITIKTVKTHVSNILS 70 (91)
T ss_dssp GCCSHHHHHH-HHH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 3555555554 444 5677889999999 8899999998765553
No 143
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=30.40 E-value=68 Score=25.50 Aligned_cols=34 Identities=18% Similarity=0.013 Sum_probs=24.8
Q ss_pred HHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHHhh
Q 025602 82 VIRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKL 116 (250)
Q Consensus 82 Ll~~~~~~g~~W~~Ia~~lpgRT~~~~knrw~~~l 116 (250)
++.+.-..|-...+||..| |-|...|+.+.+..+
T Consensus 195 vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~ 228 (239)
T 1rp3_A 195 VIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKAL 228 (239)
T ss_dssp HHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 3333334467899999999 889999988875544
No 144
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=30.32 E-value=64 Score=23.65 Aligned_cols=31 Identities=23% Similarity=0.509 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHH
Q 025602 79 EDLVIRLHKLLGNRWALIAGRLPGRTDNDIKN 110 (250)
Q Consensus 79 d~~Ll~~~~~~g~~W~~Ia~~lpgRT~~~~kn 110 (250)
+..|..+....|..|..+|+.| |=+..+|..
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 3455566778899999999999 666666543
No 145
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=29.83 E-value=58 Score=24.12 Aligned_cols=27 Identities=22% Similarity=0.151 Sum_probs=21.8
Q ss_pred hCCCHHHHhhhCCCCCHHHHHHHHHHhh
Q 025602 89 LGNRWALIAGRLPGRTDNDIKNYWNTKL 116 (250)
Q Consensus 89 ~g~~W~~Ia~~lpgRT~~~~knrw~~~l 116 (250)
.|-...+||..| |-|...|+.+.+..+
T Consensus 123 ~g~s~~EIA~~l-gis~~tV~~~~~ra~ 149 (164)
T 3mzy_A 123 RGYSYREIATIL-SKNLKSIDNTIQRIR 149 (164)
T ss_dssp TTCCHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHH
Confidence 366899999999 889999998876543
No 146
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=28.31 E-value=99 Score=19.96 Aligned_cols=34 Identities=9% Similarity=0.003 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHH
Q 025602 76 KDEEDLVIRLHKLLGNRWALIAGRLPGRTDNDIKN 110 (250)
Q Consensus 76 ~eEd~~Ll~~~~~~g~~W~~Ia~~lpgRT~~~~kn 110 (250)
.-|...|.++...++.+.++.|+.| |=+...+..
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~r 51 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYR 51 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHH
Confidence 3477888899999999999999998 545544443
No 147
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=27.24 E-value=15 Score=28.70 Aligned_cols=41 Identities=12% Similarity=0.107 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhCCCCccchhhhcCCcccccccccccccccc
Q 025602 24 VEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLR 66 (250)
Q Consensus 24 eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~ 66 (250)
+-|..|+.++.+.|.-.|..||+.++ -+...|+.|......
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~ 43 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEE 43 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 56888999999988889999999997 666777777665433
No 148
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=26.85 E-value=1.2e+02 Score=23.83 Aligned_cols=43 Identities=14% Similarity=0.144 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhCC-CHHHHhhhCCCCCHHHHHHHHHHhhhhhh
Q 025602 77 DEEDLVIRLHKLLGN-RWALIAGRLPGRTDNDIKNYWNTKLSKRV 120 (250)
Q Consensus 77 eEd~~Ll~~~~~~g~-~W~~Ia~~lpgRT~~~~knrw~~~l~k~~ 120 (250)
+-|..|+.+..+.+. .+.+||+.+ |-|...|..|.+.+....+
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~ 70 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGV 70 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 456677888777765 899999999 7899999999987766554
No 149
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=26.56 E-value=52 Score=26.59 Aligned_cols=17 Identities=18% Similarity=0.421 Sum_probs=14.2
Q ss_pred CCccCCCCCHHHHHHHH
Q 025602 67 PDIKRGNFSKDEEDLVI 83 (250)
Q Consensus 67 p~l~~~~WT~eEd~~Ll 83 (250)
|.-..|-||.++|+.|.
T Consensus 110 P~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLK 126 (168)
T ss_dssp CTTCTTCCCHHHHHHHH
T ss_pred CCCCCCCCChhhHHHHH
Confidence 45678999999999886
No 150
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=25.67 E-value=1.2e+02 Score=21.22 Aligned_cols=35 Identities=14% Similarity=0.025 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHH
Q 025602 76 KDEEDLVIRLHKLLGNRWALIAGRLPGRTDNDIKNY 111 (250)
Q Consensus 76 ~eEd~~Ll~~~~~~g~~W~~Ia~~lpgRT~~~~knr 111 (250)
.-|...|.+++..++.+.++.|+.| |=+...+..+
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rk 84 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 3477888899999999999999999 6666655544
No 151
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=25.40 E-value=29 Score=27.35 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=26.8
Q ss_pred cchhhhcCCccccccccccccccccCCccCCCCCHHHHHHHHH
Q 025602 42 RHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLVIR 84 (250)
Q Consensus 42 ~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~l~~~~WT~eEd~~Ll~ 84 (250)
..||..+. |+|+.+||..+. + ...||+||++.|.+
T Consensus 119 ~~vA~~ik-gkt~eeir~~f~------I-~nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 119 QTVADMIK-GKTPEEIRTTFN------I-KNDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHTTT-TCCHHHHHHHTT------C-CCCCCHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 47888887 999999988653 2 33699999988764
No 152
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=25.29 E-value=1.1e+02 Score=22.43 Aligned_cols=41 Identities=15% Similarity=0.076 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHHhh
Q 025602 74 FSKDEEDLVIRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKL 116 (250)
Q Consensus 74 WT~eEd~~Ll~~~~~~g~~W~~Ia~~lpgRT~~~~knrw~~~l 116 (250)
+++ .+..++.++-..|..-.+||..+ |-|...|+.+.+..+
T Consensus 23 L~~-~~r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~ 63 (113)
T 1s7o_A 23 LTD-KQMNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTE 63 (113)
T ss_dssp SCH-HHHHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 344 44556666667788999999999 899999998876544
No 153
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=24.04 E-value=49 Score=22.93 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCccchhhhcCCccccccc
Q 025602 21 WKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSC 57 (250)
Q Consensus 21 WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qc 57 (250)
.|...++.+..+...+|...=-.||+.+| -|+++++
T Consensus 7 ls~~~ee~I~~fL~~~Gp~~AL~IAK~LG-lktAK~V 42 (72)
T 3eyi_A 7 FSQQREEDIYRFLKDNGPQRALVIAQALG-MRTAKDV 42 (72)
T ss_dssp CSSHHHHHHHHHHHHHCSEEHHHHHHHTT-CCSGGGT
T ss_pred hhhhhHHHHHHHHHHcCCchHHHHHHHhC-cchhhhc
Confidence 45555778888999999877889999999 8888876
No 154
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=23.94 E-value=1.1e+02 Score=23.10 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhCC-CHHHHhhhCCCCCHHHHHHHHHHhhhhhhh
Q 025602 77 DEEDLVIRLHKLLGN-RWALIAGRLPGRTDNDIKNYWNTKLSKRVD 121 (250)
Q Consensus 77 eEd~~Ll~~~~~~g~-~W~~Ia~~lpgRT~~~~knrw~~~l~k~~~ 121 (250)
+-|..|+.+..+.|. .+.+||+.+ |-|...|..|.+.+....+-
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 51 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVI 51 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 345677777777665 899999999 88999999999887766543
No 155
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=23.91 E-value=1.6e+02 Score=21.04 Aligned_cols=44 Identities=18% Similarity=0.151 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHHhhh
Q 025602 71 RGNFSKDEEDLVIRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLS 117 (250)
Q Consensus 71 ~~~WT~eEd~~Ll~~~~~~g~~W~~Ia~~lpgRT~~~~knrw~~~l~ 117 (250)
....|+.|-+.|.- + ..|..-.+||..| |-+...|+.+...+++
T Consensus 32 ~~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~ 75 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-F-AEGFLVTEIAKKL-NRSIKTISSQKKSAMM 75 (99)
T ss_dssp SSSCCHHHHHHHHH-H-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 34577777766644 3 3688889999999 8899999998766554
No 156
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=23.38 E-value=52 Score=23.12 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhCCCCccchhhhcCCccc
Q 025602 24 VEDKILTDYIKAYGEGKWRHIPKAAGLKRC 53 (250)
Q Consensus 24 eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt 53 (250)
-|.+.|..++..++. +....|+.+|..|+
T Consensus 51 ~E~~~i~~aL~~~~g-n~~~aA~~LGIsr~ 79 (91)
T 1ntc_A 51 LERTLLTTALRHTQG-HKQEAARLLGWGAA 79 (91)
T ss_dssp HHHHHHHHHHHHTTT-CTTHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHCcCHH
Confidence 366777788888874 89999999986664
No 157
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=22.86 E-value=2.2e+02 Score=20.50 Aligned_cols=87 Identities=16% Similarity=0.082 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccchhhhcCCccccccccccccccccC------CccCCCCCHHHHHHHHHHHHHhCCC
Q 025602 19 GAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRP------DIKRGNFSKDEEDLVIRLHKLLGNR 92 (250)
Q Consensus 19 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p------~l~~~~WT~eEd~~Ll~~~~~~g~~ 92 (250)
...|.++-..++.++. -|. .-..||+.++. +...++ +|...... .-.....+.+++..|+++...-.-.
T Consensus 5 ~~~s~~~r~~i~~~~~-~G~-s~~~ia~~lgi--s~~Tv~-r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s 79 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LNV-SLHEMSRKISR--SRHCIR-VYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKT 79 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TTC-CHHHHHHHHTC--CHHHHH-HHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCC
T ss_pred ccCCHHHHHHHHHHHH-cCC-CHHHHHHHHCc--CHHHHH-HHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCC
Confidence 4578888888877773 464 67899999974 333332 33322111 1112357888888888773332234
Q ss_pred HHHHhhhCCC--CCHHHHHHH
Q 025602 93 WALIAGRLPG--RTDNDIKNY 111 (250)
Q Consensus 93 W~~Ia~~lpg--RT~~~~knr 111 (250)
=.+|+..| | -+...|...
T Consensus 80 ~~~i~~~l-g~~~s~~tV~r~ 99 (141)
T 1u78_A 80 ARDIRNEL-QLSASKRTILNV 99 (141)
T ss_dssp HHHHHHHT-TCCSCHHHHHHH
T ss_pred HHHHHHHH-CCCccHHHHHHH
Confidence 57788888 4 466666553
No 158
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=21.68 E-value=56 Score=21.19 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCccchhhhcCCccc
Q 025602 20 AWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRC 53 (250)
Q Consensus 20 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt 53 (250)
....-|.+.|.+++..+ ++....|+.+|..|+
T Consensus 17 ~l~~~Er~~I~~aL~~~--gn~~~aA~~LGIsr~ 48 (61)
T 1g2h_A 17 IIGFYEAQVLKLFYAEY--PSTRKLAQRLGVSHT 48 (61)
T ss_dssp SCSHHHHHHHHHHHHHS--CSHHHHHHHTTSCTH
T ss_pred HHHHHHHHHHHHHHHHh--CCHHHHHHHhCCCHH
Confidence 35567888888999988 478999999986664
Done!