Query 025603
Match_columns 250
No_of_seqs 161 out of 229
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 07:32:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025603.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025603hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06102 DUF947: Domain of unk 100.0 3.2E-55 6.9E-60 374.9 17.0 166 72-238 1-168 (168)
2 KOG3190 Uncharacterized conser 100.0 7.3E-53 1.6E-57 373.1 17.2 232 7-246 12-255 (256)
3 PRK10203 hypothetical protein; 41.0 2E+02 0.0043 23.8 7.9 48 119-166 49-98 (122)
4 PF09026 CENP-B_dimeris: Centr 38.8 17 0.00036 29.3 1.2 20 36-55 35-54 (101)
5 PF15290 Syntaphilin: Golgi-lo 34.3 1.7E+02 0.0036 27.9 7.1 52 125-177 59-117 (305)
6 PF04889 Cwf_Cwc_15: Cwf15/Cwc 26.5 45 0.00098 30.5 2.1 7 124-130 224-230 (244)
7 PF15290 Syntaphilin: Golgi-lo 22.6 2E+02 0.0044 27.4 5.5 46 120-171 78-123 (305)
8 PF14335 DUF4391: Domain of un 21.5 1.2E+02 0.0027 26.7 3.8 35 150-184 183-217 (221)
9 TIGR02791 VirB5 P-type DNA tra 19.8 4.2E+02 0.0091 23.4 6.9 46 120-167 150-195 (220)
10 PF07996 T4SS: Type IV secreti 19.8 5.4E+02 0.012 21.7 8.2 51 117-169 122-172 (195)
No 1
>PF06102 DUF947: Domain of unknown function (DUF947); InterPro: IPR009292 This is a family of eukaryotic proteins with unknown function.
Probab=100.00 E-value=3.2e-55 Score=374.92 Aligned_cols=166 Identities=50% Similarity=0.795 Sum_probs=162.9
Q ss_pred cccCCCCCCcccCCCCCCcccccccC--CCCCCCCCCcccCCCCCchhhhhhccccccccCchHHHHHHHHHHhhcCCHH
Q 025603 72 GRANKNRPMEVSAKKPVSRFREVVQA--PKRVVRDPRFESLCGNLDVEGFRKRYDFLFENTLPAEKEELKKQLKKTNDPN 149 (250)
Q Consensus 72 kR~nK~aP~E~SSKkpVsr~R~vv~v--~k~~~RDPRFd~l~G~~n~~~f~k~Y~FL~d~~r~~E~~~Lkk~Lkk~kd~~ 149 (250)
||.|||||+||||++|||++|+||++ +++.+||||||++||+||.++|.++|+||+|+ +..|+++|+++|+.++|++
T Consensus 1 KR~~K~aP~E~SSKk~v~r~r~v~~~~~~k~~~rDPRFd~~~G~~~~~~f~k~Y~FL~d~-r~~E~~~Lk~~lk~~k~~~ 79 (168)
T PF06102_consen 1 KRSNKNAPREMSSKKPVSRFRQVVQVEKKKKKRRDPRFDSLSGEFNEDLFRKNYGFLDDY-REKEIKELKKQLKKTKDPE 79 (168)
T ss_pred CCCCCCCCccccCCCCCCCcccccCccccCCCCCCCCcCccccccCHHHHHHhhhhHHHH-HHHHHHHHHHHHHHcCCHH
Confidence 68999999999999999999999999 88999999999999999999999999999885 8999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 025603 150 AVDKLKKRISWIDKQLRFESTKSTDAAILAEHKKKEREAAKHGKRPFYLKNSEIRKQRLIEKYNKLKGSGKVESFIEKRR 229 (250)
Q Consensus 150 ~~e~lk~~L~r~e~q~k~~~~k~~~~e~~~e~kk~Ere~vk~GKkPfflKkse~Kk~~l~~ky~~Lk~~gkl~K~leKkR 229 (250)
++++|+.+|++|++++.+...++.+++++.+|+++|+++|++|++|||||+||+++++|+++|++|+++|+|++||+++|
T Consensus 80 ~~e~lk~~L~~~~~q~~~~~~~~~~~e~~~~~kk~E~e~v~~GKkP~flKkse~Kk~~l~~kf~~lk~~~kl~K~lekkr 159 (168)
T PF06102_consen 80 EREELKRELQRMESQLKARKRKDREREVKKEHKKEEREKVKQGKKPFFLKKSEKKKLELKEKFKELKKSGKLDKYLEKKR 159 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccc
Q 025603 230 RKNAAKDHK 238 (250)
Q Consensus 230 KK~a~Kerk 238 (250)
||+++||++
T Consensus 160 KK~~~Ke~k 168 (168)
T PF06102_consen 160 KKNASKERK 168 (168)
T ss_pred hhhcccccC
Confidence 999999986
No 2
>KOG3190 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=7.3e-53 Score=373.11 Aligned_cols=232 Identities=39% Similarity=0.590 Sum_probs=188.9
Q ss_pred CCCCCCcccccccccccccCCCCC--CchhHHHHHHHhccCCHHHHHHHHhcCCcc-hhccc-----chhhhccccCCCC
Q 025603 7 ATAGSSKTKFKEESEEDNKTTSVT--SSEEEEEIERELAEITFEDLLKARSDGSHL-VYRKN-----SQEKKAGRANKNR 78 (250)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~~~~~eLs~~sF~~L~k~q~~~~~~-~~~k~-----~~~~~~kR~nK~a 78 (250)
+..||..+...++|++|++++... ..|+..... -+++|+++.+||.+.++. .++.+ ......+-.+|||
T Consensus 12 ~~~gs~rk~~~~~sEEd~~d~~p~~k~~d~~~~~e---~~~~~ee~~klqs~~~~kty~~~~~~~~~~~q~k~k~k~KHr 88 (256)
T KOG3190|consen 12 SEDGSERKEGSEDSEEDEDDEDPRLKFRDEISKTE---LGKVFEEKEKLQSKLGNKTYFGTSEQDKKRGQAKKKAKGKHR 88 (256)
T ss_pred cccccccccccccchhhcCCccchhcchhhhcccc---ccccHHHHHHHHHhhcccccccccccccchhhcccccccccC
Confidence 456788888998888886554433 444332221 168999999999774433 33221 2222334489999
Q ss_pred CCcccCCCCCCcccccccCCCCCCCCCCcccCCCCCchhhhhhccccccccCchHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 025603 79 PMEVSAKKPVSRFREVVQAPKRVVRDPRFESLCGNLDVEGFRKRYDFLFENTLPAEKEELKKQLKKTNDPNAVDKLKKRI 158 (250)
Q Consensus 79 P~E~SSKkpVsr~R~vv~v~k~~~RDPRFd~l~G~~n~~~f~k~Y~FL~d~~r~~E~~~Lkk~Lkk~kd~~~~e~lk~~L 158 (250)
|+|||||+|||+||+||+++++..||||||.++|+||.++|++||.|||+ ||..|| +|++.|.+++.+++++++.+
T Consensus 89 P~E~SSKkpVsr~R~Vv~~~kk~~rDPRFD~lsG~l~~~~~~knYqFLde-~R~~E~-eLkk~l~~~k~~~~~~q~~r-- 164 (256)
T KOG3190|consen 89 PREMSSKKPVSRFRNVVGGPKKKKRDPRFDALSGDLDEECFRKNYQFLDE-IRVKEI-ELKKELNKAKAEEKIDQLER-- 164 (256)
T ss_pred chhhhccCCchHHhhccCCccccccCcchhhccCccCHHHHHhhhhhHhh-hhhhHH-HHHHHHHhhhchHHHHHHHH--
Confidence 99999999999999999999999999999999999999999999999987 589999 89999999988777665554
Q ss_pred HHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhhhccchhHHHHHHHHhhhhc
Q 025603 159 SWIDKQLRFESTKS----TDAAILAEHKKKEREAAKHGKRPFYLKNSEIRKQRLIEKYNKLKGSGKVESFIEKRRRKNAA 234 (250)
Q Consensus 159 ~r~e~q~k~~~~k~----~~~e~~~e~kk~Ere~vk~GKkPfflKkse~Kk~~l~~ky~~Lk~~gkl~K~leKkRKK~a~ 234 (250)
.|+.++.+.+.+. ...+++.+++..+++.+++|++|||||+|++++++|+++|++|+.+++|++||+|+|||+|+
T Consensus 165 -q~~~~~~s~ker~~~ekr~~~~~~elk~~e~e~~k~G~~Py~LKKsE~Rkl~~~~Ky~~lK~skkLdkylerKRkk~a~ 243 (256)
T KOG3190|consen 165 -QMTQHLMSTKERTQAEKRHAETRKELKDDERERAKEGKRPYFLKKSEQRKLDQEEKYKELKKSKKLDKYLERKRKKRAG 243 (256)
T ss_pred -HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence 4444444433332 25589999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCC
Q 025603 235 KDHKYMPYRRPN 246 (250)
Q Consensus 235 Kerk~lP~~R~~ 246 (250)
|++++||++|.+
T Consensus 244 Ke~k~~P~~~~~ 255 (256)
T KOG3190|consen 244 KEKKHLPFERYG 255 (256)
T ss_pred hhhhcCcccccC
Confidence 999999999875
No 3
>PRK10203 hypothetical protein; Provisional
Probab=41.02 E-value=2e+02 Score=23.84 Aligned_cols=48 Identities=21% Similarity=0.245 Sum_probs=34.0
Q ss_pred hhhccccccc-cCchHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHHHHH
Q 025603 119 FRKRYDFLFE-NTLPAEKEELKKQLKKTNDPNAV-DKLKKRISWIDKQLR 166 (250)
Q Consensus 119 f~k~Y~FL~d-~~r~~E~~~Lkk~Lkk~kd~~~~-e~lk~~L~r~e~q~k 166 (250)
.-+|-+||-. ....+|+..|...|..+.++.++ ..+...|.-++-++.
T Consensus 49 ilknag~lP~el~LrKE~~~l~~~l~~~~d~~~~~~~~~k~L~~l~lr~~ 98 (122)
T PRK10203 49 LLKNAGCLPPELEQRREAIQLLDLLKGIREDDPQYQEVSRRLSLLELKLR 98 (122)
T ss_pred HHhhCCCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 4567788854 23467888889999988876555 477777777766655
No 4
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=38.81 E-value=17 Score=29.26 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=6.8
Q ss_pred HHHHHHhccCCHHHHHHHHh
Q 025603 36 EEIERELAEITFEDLLKARS 55 (250)
Q Consensus 36 ~~~~~eLs~~sF~~L~k~q~ 55 (250)
++-..++.=.+||++..+=.
T Consensus 35 dee~de~p~p~fgea~~~~~ 54 (101)
T PF09026_consen 35 DEEEDEVPVPEFGEAMAYFT 54 (101)
T ss_dssp -----------HHHHHHHHH
T ss_pred ccccccccchhHHHHHhhcc
Confidence 33444777789998887644
No 5
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=34.29 E-value=1.7e+02 Score=27.93 Aligned_cols=52 Identities=21% Similarity=0.326 Sum_probs=31.1
Q ss_pred cccccCchHHHH--HHHHHHhhcCC-----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 025603 125 FLFENTLPAEKE--ELKKQLKKTND-----PNAVDKLKKRISWIDKQLRFESTKSTDAAI 177 (250)
Q Consensus 125 FL~d~~r~~E~~--~Lkk~Lkk~kd-----~~~~e~lk~~L~r~e~q~k~~~~k~~~~e~ 177 (250)
||.=. .++|+. -|+..|+.+-+ .-++++|+-+|.||..--.+++=-+.+.++
T Consensus 59 YLTPL-QQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQL 117 (305)
T PF15290_consen 59 YLTPL-QQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQL 117 (305)
T ss_pred hcChH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45433 456654 57777776542 446778888888886555554444444444
No 6
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=26.54 E-value=45 Score=30.54 Aligned_cols=7 Identities=14% Similarity=0.539 Sum_probs=4.9
Q ss_pred ccccccC
Q 025603 124 DFLFENT 130 (250)
Q Consensus 124 ~FL~d~~ 130 (250)
.||+|+.
T Consensus 224 ~fiND~~ 230 (244)
T PF04889_consen 224 EFINDTL 230 (244)
T ss_pred CcccCCc
Confidence 6887763
No 7
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=22.62 E-value=2e+02 Score=27.38 Aligned_cols=46 Identities=20% Similarity=0.347 Sum_probs=32.9
Q ss_pred hhccccccccCchHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 025603 120 RKRYDFLFENTLPAEKEELKKQLKKTNDPNAVDKLKKRISWIDKQLRFESTK 171 (250)
Q Consensus 120 ~k~Y~FL~d~~r~~E~~~Lkk~Lkk~kd~~~~e~lk~~L~r~e~q~k~~~~k 171 (250)
+.+-.=|.| |+.||.+|+.||..-... -|..+..|++.|+.-.+.+
T Consensus 78 kes~~~l~d--RetEI~eLksQL~RMrED----WIEEECHRVEAQLALKEAR 123 (305)
T PF15290_consen 78 KESENRLHD--RETEIDELKSQLARMRED----WIEEECHRVEAQLALKEAR 123 (305)
T ss_pred HHHHHHHHh--hHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 344455654 799999999999876533 4777888888888754443
No 8
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=21.47 E-value=1.2e+02 Score=26.74 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 025603 150 AVDKLKKRISWIDKQLRFESTKSTDAAILAEHKKK 184 (250)
Q Consensus 150 ~~e~lk~~L~r~e~q~k~~~~k~~~~e~~~e~kk~ 184 (250)
+.++|..+|.+++.+++.+..-.++-++-.+.++-
T Consensus 183 ~i~~L~kei~~L~~~~~kEkq~nrkveln~elk~l 217 (221)
T PF14335_consen 183 QIEKLEKEIAKLKKKIKKEKQFNRKVELNTELKKL 217 (221)
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 34566777777777776665555555555554443
No 9
>TIGR02791 VirB5 P-type DNA transfer protein VirB5. The VirB5 protein is involved in the type IV DNA secretion systems typified by the Agrobacterium Ti plasmid vir system where it interacts with several other proteins essential for proper pilus formation. VirB5 is homologous to the IncN (N-type) conjugation system protein TraC as well as the P-type protein TrbJ and the F-type protein TraE.
Probab=19.80 E-value=4.2e+02 Score=23.43 Aligned_cols=46 Identities=22% Similarity=0.399 Sum_probs=35.2
Q ss_pred hhccccccccCchHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Q 025603 120 RKRYDFLFENTLPAEKEELKKQLKKTNDPNAVDKLKKRISWIDKQLRF 167 (250)
Q Consensus 120 ~k~Y~FL~d~~r~~E~~~Lkk~Lkk~kd~~~~e~lk~~L~r~e~q~k~ 167 (250)
...|.=+.. |-..|+.|..+|..++||.+..+|+..|+--...+..
T Consensus 150 ~~~y~~~~~--rl~~i~~L~~~I~~a~d~K~~~DLq~rI~~Eqa~iq~ 195 (220)
T TIGR02791 150 ERAYDAATK--RLSNIEQLRQKINEAGDPKAIADLQARIQVEQAMIQN 195 (220)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence 555666643 6788999999999999999999998887765444443
No 10
>PF07996 T4SS: Type IV secretion system proteins; InterPro: IPR014158 This entry contains VirB5, a protein that is involved in the type IV DNA secretion systems typified by the Agrobacterium Ti plasmid vir system where it interacts with several other proteins essential for proper pilus formation []. VirB5 is homologous to the IncN (N-type) conjugation system protein TraC [] as well as the P-type protein TrbJ and the F-type protein TraE [].; PDB: 1R8I_A.
Probab=19.78 E-value=5.4e+02 Score=21.68 Aligned_cols=51 Identities=18% Similarity=0.239 Sum_probs=36.0
Q ss_pred hhhhhccccccccCchHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 025603 117 EGFRKRYDFLFENTLPAEKEELKKQLKKTNDPNAVDKLKKRISWIDKQLRFES 169 (250)
Q Consensus 117 ~~f~k~Y~FL~d~~r~~E~~~Lkk~Lkk~kd~~~~e~lk~~L~r~e~q~k~~~ 169 (250)
......|.=+.. |-..|..|..+|..+.|+.+..+|...|+-....+....
T Consensus 122 a~~~~~~~~~~~--r~~~i~~L~~~i~~a~d~K~~~DLq~rI~~E~a~iqne~ 172 (195)
T PF07996_consen 122 AFAEQAYKQAEQ--RLEQIQQLMQQINSAKDPKEIADLQNRIQAEQAMIQNEQ 172 (195)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555532 678899999999999999999999998877665555443
Done!