Query 025603
Match_columns 250
No_of_seqs 161 out of 229
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 13:41:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025603.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025603hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i00_A HIP-I, huntingtin-inter 49.6 80 0.0027 24.8 8.0 85 133-217 22-113 (120)
2 1r8i_A TRAC; VIRB5, helical bu 17.5 2.2E+02 0.0077 23.7 5.8 37 131-167 132-168 (213)
3 3osx_A 60 kDa chaperonin; alph 14.3 1.8E+02 0.006 25.0 4.3 31 132-162 165-195 (201)
4 1g6u_A Domain swapped dimer; d 14.3 2.8E+02 0.0094 18.1 4.8 25 146-170 17-41 (48)
5 3m6c_A 60 kDa chaperonin 1; ch 13.2 2E+02 0.0068 24.5 4.3 31 132-162 158-188 (194)
6 2a26_A Calcyclin-binding prote 12.9 3.2E+02 0.011 18.1 5.9 37 131-167 9-45 (50)
7 3b5m_A Uncharacterized protein 12.4 1.4E+02 0.0049 24.8 3.1 47 117-163 147-193 (205)
8 3ogk_Q JAZ1 incomplete degron 11.8 1.2E+02 0.0041 17.2 1.7 16 220-235 4-19 (22)
9 1zq7_A Hypothetical protein MM 11.6 73 0.0025 27.3 1.0 11 101-111 82-92 (207)
10 1vaj_A Hypothetical protein PH 10.9 78 0.0027 27.2 1.0 11 101-111 87-97 (214)
No 1
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=49.60 E-value=80 Score=24.82 Aligned_cols=85 Identities=25% Similarity=0.241 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhcCC--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHcCCC--C-c--ccchHHHHH
Q 025603 133 AEKEELKKQLKKTND--PNAVDKLKKRISWIDKQLRFESTKSTDAAILAEHKKKEREAAKHGKR--P-F--YLKNSEIRK 205 (250)
Q Consensus 133 ~E~~~Lkk~Lkk~kd--~~~~e~lk~~L~r~e~q~k~~~~k~~~~e~~~e~kk~Ere~vk~GKk--P-f--flKkse~Kk 205 (250)
.|+..|+..|...+. ......|+..|..|+..+........+.-+.-+..+.+.+....... | - =+.-.|.|.
T Consensus 22 reie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~~~~~~q~~~~e~E~kA 101 (120)
T 3i00_A 22 REISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEKAQRSLSEIERKA 101 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 344444444444332 23346777777778877777665444445555666677766655432 1 1 246677777
Q ss_pred HHHHHHHHhhhc
Q 025603 206 QRLIEKYNKLKG 217 (250)
Q Consensus 206 ~~l~~ky~~Lk~ 217 (250)
.....+|..||.
T Consensus 102 qa~Eerf~KLKe 113 (120)
T 3i00_A 102 QANEQRYSKLKE 113 (120)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 788888988876
No 2
>1r8i_A TRAC; VIRB5, helical bundle, structural protein; 3.00A {Escherichia coli} SCOP: a.8.7.1
Probab=17.51 E-value=2.2e+02 Score=23.69 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=30.3
Q ss_pred chHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Q 025603 131 LPAEKEELKKQLKKTNDPNAVDKLKKRISWIDKQLRF 167 (250)
Q Consensus 131 r~~E~~~Lkk~Lkk~kd~~~~e~lk~~L~r~e~q~k~ 167 (250)
|-..|..|..+|..++|+.+..+|+..|+-....+..
T Consensus 132 rl~~I~~L~~~I~~a~d~K~~aDLq~rI~aE~a~iqn 168 (213)
T 1r8i_A 132 ELSDMQALTEQIKSTPDLKSIADLQARIQTSQGAIQG 168 (213)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999998888766555543
No 3
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A
Probab=14.32 E-value=1.8e+02 Score=25.00 Aligned_cols=31 Identities=16% Similarity=0.394 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 025603 132 PAEKEELKKQLKKTNDPNAVDKLKKRISWID 162 (250)
Q Consensus 132 ~~E~~~Lkk~Lkk~kd~~~~e~lk~~L~r~e 162 (250)
+.-+.+|+.+|..+...-++++|+..|.+|-
T Consensus 165 ~~Rv~qIr~qie~t~S~ydkEKLqERLAKLs 195 (201)
T 3osx_A 165 AARVTQIRQQIEESTSDYDREKLQERVAKLA 195 (201)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHc
Confidence 4557899999999999999999999998874
No 4
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=14.31 E-value=2.8e+02 Score=18.08 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHh
Q 025603 146 NDPNAVDKLKKRISWIDKQLRFEST 170 (250)
Q Consensus 146 kd~~~~e~lk~~L~r~e~q~k~~~~ 170 (250)
-.|++...|..+||-++..+.+.+.
T Consensus 17 fspeelaaleselqalekklaalks 41 (48)
T 1g6u_A 17 FSPEELAALESELQALEKKLAALKS 41 (48)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999888876543
No 5
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis}
Probab=13.19 E-value=2e+02 Score=24.50 Aligned_cols=31 Identities=16% Similarity=0.338 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 025603 132 PAEKEELKKQLKKTNDPNAVDKLKKRISWID 162 (250)
Q Consensus 132 ~~E~~~Lkk~Lkk~kd~~~~e~lk~~L~r~e 162 (250)
..-+.+|+.+|..+...-++++|+..|.+|.
T Consensus 158 ~~Rv~qIr~~ie~t~s~ydkEKLqERlAkLs 188 (194)
T 3m6c_A 158 ANRAKHLRAEIDKSDSDWDREKLGERLAKLA 188 (194)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHc
Confidence 4557899999999999999999999998874
No 6
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=12.87 E-value=3.2e+02 Score=18.13 Aligned_cols=37 Identities=27% Similarity=0.324 Sum_probs=31.5
Q ss_pred chHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Q 025603 131 LPAEKEELKKQLKKTNDPNAVDKLKKRISWIDKQLRF 167 (250)
Q Consensus 131 r~~E~~~Lkk~Lkk~kd~~~~e~lk~~L~r~e~q~k~ 167 (250)
....+++|+.-+...+.+.-+.-|..+|..++..+..
T Consensus 9 L~~DL~El~~Ll~~AkR~rVk~~L~~ei~~lE~ei~~ 45 (50)
T 2a26_A 9 LQKDLEEVKVLLEKATRKRVRDALTAEKSKIETEIKN 45 (50)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 3678889999999999999999999999999877763
No 7
>3b5m_A Uncharacterized protein; structural genomics, unknown function, flavoprotein, PSI-2, structure initiative; 1.21A {Rhodopirellula baltica}
Probab=12.36 E-value=1.4e+02 Score=24.85 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=35.0
Q ss_pred hhhhhccccccccCchHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 025603 117 EGFRKRYDFLFENTLPAEKEELKKQLKKTNDPNAVDKLKKRISWIDK 163 (250)
Q Consensus 117 ~~f~k~Y~FL~d~~r~~E~~~Lkk~Lkk~kd~~~~e~lk~~L~r~e~ 163 (250)
...--+|.+|.+.....+|..+..-++++-++.+++.++..+..+..
T Consensus 147 aV~~tRl~~~~~~~~~~~i~~~~~~v~k~gg~~e~ea~~~l~~~~~~ 193 (205)
T 3b5m_A 147 AVAATRLHLLPPEEIEEELERARIAIEKTGGEPEREALQLIRRHVRE 193 (205)
T ss_dssp HHHHTCSSCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 34556677776544578888999999999999999888777766543
No 8
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=11.77 E-value=1.2e+02 Score=17.24 Aligned_cols=16 Identities=31% Similarity=0.650 Sum_probs=12.3
Q ss_pred hhHHHHHHHHhhhhcc
Q 025603 220 KVESFIEKRRRKNAAK 235 (250)
Q Consensus 220 kl~K~leKkRKK~a~K 235 (250)
-|..|||||+-+..++
T Consensus 4 SLqRFleKRk~R~~~~ 19 (22)
T 3ogk_Q 4 SLHRFLEKRKDRVTSK 19 (26)
T ss_pred hHHHHHHHHHHHhhcc
Confidence 3889999988776654
No 9
>1zq7_A Hypothetical protein MM0484; X-RAY, NESG, MAR9, Q8PZK8, structural genomics, PSI, protein structure initiative; 2.11A {Methanosarcina mazei} SCOP: d.309.1.1
Probab=11.59 E-value=73 Score=27.30 Aligned_cols=11 Identities=45% Similarity=0.866 Sum_probs=9.1
Q ss_pred CCCCCCcccCC
Q 025603 101 VVRDPRFESLC 111 (250)
Q Consensus 101 ~~RDPRFd~l~ 111 (250)
-.+||||.|+.
T Consensus 82 A~~DpRF~Pl~ 92 (207)
T 1zq7_A 82 ATRDPRFPTVE 92 (207)
T ss_dssp HHSCTTSCCCC
T ss_pred ccCCCCCCCCC
Confidence 46799999985
No 10
>1vaj_A Hypothetical protein PH0010; alpha + beta fold, structural genomics, unknown function; 1.82A {Pyrococcus horikoshii} SCOP: d.309.1.1
Probab=10.89 E-value=78 Score=27.17 Aligned_cols=11 Identities=45% Similarity=0.791 Sum_probs=9.0
Q ss_pred CCCCCCcccCC
Q 025603 101 VVRDPRFESLC 111 (250)
Q Consensus 101 ~~RDPRFd~l~ 111 (250)
-.+||||.|+.
T Consensus 87 A~~DpRF~Pl~ 97 (214)
T 1vaj_A 87 AVDDPRFPPVK 97 (214)
T ss_dssp HHCCTTSCCCC
T ss_pred ccCCCCCCCCC
Confidence 46799999985
Done!