Query 025604
Match_columns 250
No_of_seqs 132 out of 1066
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 07:33:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025604.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025604hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02724 Molybdenum cofactor s 100.0 2.1E-59 4.6E-64 469.2 23.4 225 3-239 516-757 (805)
2 COG3217 Uncharacterized Fe-S p 100.0 7.3E-57 1.6E-61 387.7 17.8 218 4-239 1-218 (270)
3 KOG2362 Uncharacterized Fe-S p 100.0 6.4E-54 1.4E-58 373.9 11.4 229 1-240 39-282 (336)
4 PF03476 MOSC_N: MOSC N-termin 100.0 5.8E-35 1.3E-39 229.8 7.2 119 4-133 1-120 (120)
5 PF03473 MOSC: MOSC domain; I 99.9 1.7E-24 3.6E-29 172.7 5.5 86 156-241 11-99 (133)
6 KOG2142 Molybdenum cofactor su 99.3 5.9E-13 1.3E-17 127.2 1.8 200 6-242 465-673 (728)
7 PRK14499 molybdenum cofactor b 97.1 0.00094 2E-08 60.6 5.8 61 164-228 203-268 (308)
8 COG2258 Uncharacterized protei 92.3 0.35 7.5E-06 41.5 5.8 64 165-231 56-122 (210)
9 PRK11536 6-N-hydroxylaminopuri 89.6 0.98 2.1E-05 39.2 6.1 62 165-229 56-123 (223)
10 PF05962 HutD: HutD; InterPro 57.1 37 0.00081 28.4 6.2 51 4-55 15-73 (184)
11 KOG3347 Predicted nucleotide k 41.9 13 0.00029 30.6 1.1 28 187-214 3-40 (176)
12 PRK14499 molybdenum cofactor b 35.6 46 0.00099 30.4 3.7 37 2-39 160-197 (308)
13 KOG2362 Uncharacterized Fe-S p 30.1 38 0.00083 30.9 2.2 48 16-65 63-114 (336)
14 cd00175 SNc Staphylococcal nuc 24.8 3E+02 0.0066 20.6 6.6 60 79-140 5-67 (129)
15 KOG2963 RNA-binding protein re 24.4 26 0.00056 32.5 0.1 24 220-243 172-195 (405)
16 smart00318 SNc Staphylococcal 20.8 3.9E+02 0.0084 20.4 6.5 26 115-140 49-75 (138)
No 1
>PLN02724 Molybdenum cofactor sulfurase
Probab=100.00 E-value=2.1e-59 Score=469.21 Aligned_cols=225 Identities=32% Similarity=0.587 Sum_probs=200.4
Q ss_pred CceEEeeeeeccccCcCCeeecceeeeecCccccCceeEEEEcCCceEeecCccceeeEEeecCCcccccCCCCCCCceE
Q 025604 3 AAAKVKSIFVYPIKSCRGISVCQQAPLTPTGFRWDRQWMVINNNGRAYTQRNEPKLALVETELPNEAFLEGWEPTGRSFM 82 (250)
Q Consensus 3 ~~~~V~~L~~yPIKS~~g~~v~~~~~l~~~Gl~~DR~f~l~~~~g~~lt~r~~p~L~~i~~~~~~~~~~~~~~~~~~~~l 82 (250)
..++|++|||||||||+|++| ++|++++.||.|||+|||+|++|+|+|||++|+|++|++.++.+ ++.|
T Consensus 516 ~~~~v~~l~iYPVKS~~g~~v-~~a~~~~~Gl~~DR~~~lvd~~g~~~t~r~~p~l~~i~~~~~~~----------~~~l 584 (805)
T PLN02724 516 DSHRLKSITVYPIKSCAGFSV-ERWPLSETGLLYDREWMIQSLTGEILTQKKVPEMCLITTFIDLE----------SGKL 584 (805)
T ss_pred CCCEEEEEEEeccccCCCcee-eEEEEecccccccceEEEEcCCCcEEEcccCceEEEEEeEEecC----------CCeE
Confidence 467899999999999999999 99999999999999999999999999999999999999999532 4679
Q ss_pred EEEcCCCc-eEEEeccCCCC--CccceEEeccccccccccHHHHHHHHhhhCCCeEEEEecCCCCCCCCC-----cCcc-
Q 025604 83 VIRAPGMQ-ALKISLSKPRD--IADGVSVWEWCGSALAEGAEASNWFTNYLGKPSRLVRYNAESETRPVD-----PKYA- 153 (250)
Q Consensus 83 ~l~~~g~~-~l~i~l~~~~~--~~~~~~v~~~~~~~~d~g~~~~~wlS~~lg~~~rLv~~~~~~~~r~~~-----~~~~- 153 (250)
++++|+++ ++.|++.+... ....+++|++...+++||+++++|||++||++|+|+++.+... |... +.+.
T Consensus 585 ~l~~~~~~~~l~v~l~~~~~~~~~~~v~v~~~~~~~~~~g~~~~~w~S~~lg~~~~Lv~~~~~~~-r~~~~~~~~~~~~~ 663 (805)
T PLN02724 585 VVRAPRCDHKLEIPLESDSQHEESGEVILCGNRAESMSYGTEINEWFTNALGRRCTLVRKSSSNT-RVCRNRNPSHSPCG 663 (805)
T ss_pred EEEcCCCCccEEEeCCCcccccccceeEEeCCcceeEecchhHHHHHHHHhCCceEEEEeCCccc-cccccccccccccc
Confidence 99999987 69999976432 3457899999999999999999999999999999999976544 3221 1111
Q ss_pred -CCCceeccCCCceeeeeHhHHHHHHhHhCC-------CCCCccccceEEEcCCCCCCCCCcceEEECceEEEeecccCC
Q 025604 154 -AGEKIMFSDCYPFMLLSQGSLDALNKLLKE-------PIPINRFRPNILVDGCEPFSEDLWTGIRINNCTFQGVKLCDR 225 (250)
Q Consensus 154 -~~~~~~f~D~~p~~lis~~Sl~~l~~~l~~-------~v~~~RFRpNIvi~g~~pf~Ed~W~~l~IG~~~l~v~~~c~R 225 (250)
.....+|+|.+||||+|++||++||++++. +++++||||||||+|++||+||.|++|+||+++|++++||.|
T Consensus 664 ~~~~~~~faD~~p~llis~aSl~~Ln~~l~~~~~~~~~~v~~~RFRpNiVv~g~~~f~ED~W~~l~IG~~~~~~~~~C~R 743 (805)
T PLN02724 664 DDESRLSFANEGQFLLISEASVEDLNRRLATGQEDAKIRLDPTRFRPNLVVSGGEAYAEDEWQSLSIGDAEFTVLGGCNR 743 (805)
T ss_pred CcCCceeecCCCceEEecHHHHHHHHHHhccccccccCCCcHHHccceEEECCCCCccccCceEEEECCEEEEEecccCC
Confidence 224589999999999999999999999973 699999999999999999999999999999999999999999
Q ss_pred eecCccccccCccc
Q 025604 226 CKRLFSRCQLSIKT 239 (250)
Q Consensus 226 C~~~~vdp~tg~~~ 239 (250)
|+||||||+||+++
T Consensus 744 C~~~tvDp~tg~~~ 757 (805)
T PLN02724 744 CQMINIDQETGLVN 757 (805)
T ss_pred CCCCcCCcccCccC
Confidence 99999999999864
No 2
>COG3217 Uncharacterized Fe-S protein [General function prediction only]
Probab=100.00 E-value=7.3e-57 Score=387.67 Aligned_cols=218 Identities=28% Similarity=0.533 Sum_probs=196.8
Q ss_pred ceEEeeeeeccccCcCCeeecceeeeecCccccCceeEEEEcCCceEeecCccceeeEEeecCCcccccCCCCCCCceEE
Q 025604 4 AAKVKSIFVYPIKSCRGISVCQQAPLTPTGFRWDRQWMVINNNGRAYTQRNEPKLALVETELPNEAFLEGWEPTGRSFMV 83 (250)
Q Consensus 4 ~~~V~~L~~yPIKS~~g~~v~~~~~l~~~Gl~~DR~f~l~~~~g~~lt~r~~p~L~~i~~~~~~~~~~~~~~~~~~~~l~ 83 (250)
|++|++||||||||++|+.+ +++.+...||.+||+|||+|.+|.|+|+|++|+|+++++...+ ..+.
T Consensus 1 m~~ls~L~iyPvKSl~g~~l-~~a~v~~~Gl~~DR~fml~d~dG~~itar~~pa~~~~~~~~~~------------~~~~ 67 (270)
T COG3217 1 MATLSQLYIYPVKSLRGERL-SRALVDASGLAGDRRFMLVDPDGRFITARRRPAMVRFTPAYEH------------DGLR 67 (270)
T ss_pred Cccchheeeeccccccchhh-hhheeeccCCccceEEEEEcCCCceeccccccceeEeeeeccc------------cceE
Confidence 34699999999999999999 9999999999999999999999999999999999999996532 3678
Q ss_pred EEcCCCceEEEeccCCCCCccceEEeccccccccccHHHHHHHHhhhCCCeEEEEecCCCCCCCCCcCccCCCceeccCC
Q 025604 84 IRAPGMQALKISLSKPRDIADGVSVWEWCGSALAEGAEASNWFTNYLGKPSRLVRYNAESETRPVDPKYAAGEKIMFSDC 163 (250)
Q Consensus 84 l~~~g~~~l~i~l~~~~~~~~~~~v~~~~~~~~d~g~~~~~wlS~~lg~~~rLv~~~~~~~~r~~~~~~~~~~~~~f~D~ 163 (250)
+++++.+.+.+...+ ....++.||++.......++++++|||.|||+++.|++.+.+..+| .... +.....|+|+
T Consensus 68 l~~~~~~~~~v~~~~--~~~~~~~vw~~~~~a~~~~~a~~d~lS~flg~~v~L~~~~~~~~r~-v~~~--p~~~~~fadg 142 (270)
T COG3217 68 LTAPDGEELYVRFAD--AQRAPVEVWGDHFTADAAGDAANDWLSGFLGRAVSLRWDGAGFARR-VKAG--PAVPVTFADG 142 (270)
T ss_pred EecCCCccceeeccc--cccccceeeccccccccchhHHHHHHHhhhceeeEEEecCcccccc-ccCC--CceeeEecCC
Confidence 999998888888765 3456789999999999999999999999999999999998754333 2221 3456899999
Q ss_pred CceeeeeHhHHHHHHhHhCCCCCCccccceEEEcCCCCCCCCCcceEEECceEEEeecccCCeecCccccccCccc
Q 025604 164 YPFMLLSQGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLWTGIRINNCTFQGVKLCDRCKRLFSRCQLSIKT 239 (250)
Q Consensus 164 ~p~~lis~~Sl~~l~~~l~~~v~~~RFRpNIvi~g~~pf~Ed~W~~l~IG~~~l~v~~~c~RC~~~~vdp~tg~~~ 239 (250)
+|+|++|++||++|+++.+..++|+|||||||++|..+|+||.|+.|+||+++|.+++||.||+|||+||+||++.
T Consensus 143 ~p~l~~~~aSl~dL~~r~~~~~~merFRpNlvv~ge~a~aEd~w~~i~IG~v~F~~vkPC~RCi~Ttvd~~tGe~~ 218 (270)
T COG3217 143 YPILLFNTASLADLRRRVPANLEMERFRPNLVVEGEDAFAEDSWKSIRIGGVRFDVVKPCSRCIFTTVDPDTGERR 218 (270)
T ss_pred ceEEEEccccHHHHhhhccCCCChhhCCCceEEeecccccccCceEEEEccEEEEEeccchhcceeeECCcccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999973
No 3
>KOG2362 consensus Uncharacterized Fe-S protein [General function prediction only]
Probab=100.00 E-value=6.4e-54 Score=373.88 Aligned_cols=229 Identities=39% Similarity=0.662 Sum_probs=189.6
Q ss_pred CCCceEEeeeeeccccCcCCeeecceeeeecCc----cccCceeEEEEcCCceEeecCccceeeEEeecCCcccccCCCC
Q 025604 1 MEAAAKVKSIFVYPIKSCRGISVCQQAPLTPTG----FRWDRQWMVINNNGRAYTQRNEPKLALVETELPNEAFLEGWEP 76 (250)
Q Consensus 1 m~~~~~V~~L~~yPIKS~~g~~v~~~~~l~~~G----l~~DR~f~l~~~~g~~lt~r~~p~L~~i~~~~~~~~~~~~~~~ 76 (250)
|.+.++|++|++||||||+|++| .++.+|..| ...||.|++++++|+++|+|..|+|++|+....+..+...|-+
T Consensus 39 w~~vg~v~slhiyPiKSC~~~~v-~q~~ct~~g~~~e~~~DR~~lvVn~kg~~iTaRv~P~l~~ies~~~~~~~~v~~~~ 117 (336)
T KOG2362|consen 39 WVPVGRVKSLHIYPIKSCKGIDV-FQYKCTPLGPSMEFLWDRTFLVVNEKGKFITARVKPKLVLIESEMPDGAFLVDWPG 117 (336)
T ss_pred eEEeeeeeeeEEEEeccccccch-hHhhcCCCCcchhheeeceEEEEeccceEEEeeccceEEEeecccccceeEEecCC
Confidence 35678999999999999999999 999999998 7889999999999999999999999999998865543333322
Q ss_pred -CCCceEEEEcCCCceEEEeccCCCCCccceEEeccccccccccHHHHHHHHhhh----------CCCeEEEEecCCCCC
Q 025604 77 -TGRSFMVIRAPGMQALKISLSKPRDIADGVSVWEWCGSALAEGAEASNWFTNYL----------GKPSRLVRYNAESET 145 (250)
Q Consensus 77 -~~~~~l~l~~~g~~~l~i~l~~~~~~~~~~~v~~~~~~~~d~g~~~~~wlS~~l----------g~~~rLv~~~~~~~~ 145 (250)
.....+.+++++++.+.+. ...|+...++++||+..+.|||+++ ++++++.+.......
T Consensus 118 ~~~~s~~~~~~l~~~~~~~~----------t~~~~~~~dg~~cgd~~~~~~s~~~e~~~~~~~~~~~~~~~er~~~~~~~ 187 (336)
T KOG2362|consen 118 PEKDSVLVFRVLGNKRLKVA----------TLFPDLSADGYDCGDWVASAFSEGIEEPNWRLIFVGKGLYTERTNKPDET 187 (336)
T ss_pred CcchhhhhhhhccCCccccc----------cccccceeeccccHhhhhhhHHhhhhccchhhhhhcCcceeeecccCCcc
Confidence 1112223333333333333 3345555666777776666666654 667888887666666
Q ss_pred CCCCcCccCCCceeccCCCceeeeeHhHHHHHHhHhCCCCCCccccceEEEcCCCCCCCCCcceEEECceEEEeecccCC
Q 025604 146 RPVDPKYAAGEKIMFSDCYPFMLLSQGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLWTGIRINNCTFQGVKLCDR 225 (250)
Q Consensus 146 r~~~~~~~~~~~~~f~D~~p~~lis~~Sl~~l~~~l~~~v~~~RFRpNIvi~g~~pf~Ed~W~~l~IG~~~l~v~~~c~R 225 (250)
|...|.+.+++..+|+|.+|+||+|++||++||.+++++|++.||||||+||||.||+||.|.+|+||+++|+.+++|+|
T Consensus 188 ~~~~p~~~~~d~~~f~D~~Pfli~s~aSL~dLNt~L~~~V~~~~FRpnI~vdgc~~~~ED~W~ei~Igd~~~~~v~~CtR 267 (336)
T KOG2362|consen 188 WWNNPVPKRGDSTTFSDLAPFLIASQASLDDLNTRLDKPVPMNNFRPNIVVDGCDAFAEDKWDEIRIGDAEFQCVAPCTR 267 (336)
T ss_pred ccCCCccCccccccccccchhhhhchhhHHHHHhhhcCCccHhhcccceEEecCccccccccceEEEccEEEEEEeeccc
Confidence 77888888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCccccccCcccc
Q 025604 226 CKRLFSRCQLSIKTL 240 (250)
Q Consensus 226 C~~~~vdp~tg~~~~ 240 (250)
|++|||||+||+++.
T Consensus 268 CiltTV~petG~~~k 282 (336)
T KOG2362|consen 268 CILTTVDPETGEMSK 282 (336)
T ss_pred eeeeeeccccccccc
Confidence 999999999999998
No 4
>PF03476 MOSC_N: MOSC N-terminal beta barrel domain; InterPro: IPR005303 This domain is found to the N terminus of MOSC domain (IPR005302 from INTERPRO). The function of this domain is unknown, however it is predicted to adopt a beta barrel fold.; PDB: 2EXN_A.
Probab=100.00 E-value=5.8e-35 Score=229.76 Aligned_cols=119 Identities=41% Similarity=0.810 Sum_probs=64.8
Q ss_pred ceEEeeeeeccccCcCCeeecceeeeecCccc-cCceeEEEEcCCceEeecCccceeeEEeecCCcccccCCCCCCCceE
Q 025604 4 AAKVKSIFVYPIKSCRGISVCQQAPLTPTGFR-WDRQWMVINNNGRAYTQRNEPKLALVETELPNEAFLEGWEPTGRSFM 82 (250)
Q Consensus 4 ~~~V~~L~~yPIKS~~g~~v~~~~~l~~~Gl~-~DR~f~l~~~~g~~lt~r~~p~L~~i~~~~~~~~~~~~~~~~~~~~l 82 (250)
|++|++||+||||||+|+++ +++++++.||. +||+|||+|++|+|+|+|++|+|++|++.++.+ ++.|
T Consensus 1 m~~v~~L~iyPIKS~~g~~~-~~~~~~~~Gl~~~DR~~~l~d~~g~~it~r~~P~l~~i~~~~~~~----------~~~l 69 (120)
T PF03476_consen 1 MGRVSSLYIYPIKSCRGIEV-DEAEVTPSGLKAGDRRFMLVDEDGRFITQRQYPRLALIRPEIDED----------DGTL 69 (120)
T ss_dssp --------------------------------GT--SEEEEETTS-EE-TTT-GGGG--EEEE-------------SSEE
T ss_pred Cccccccccccccccccccc-cccccccccCCccchhheeECCCCCEEeeccCcceeeEEEEeecc----------eeEE
Confidence 68999999999999999999 99999999996 999999999999999999999999999999642 5799
Q ss_pred EEEcCCCceEEEeccCCCCCccceEEeccccccccccHHHHHHHHhhhCCC
Q 025604 83 VIRAPGMQALKISLSKPRDIADGVSVWEWCGSALAEGAEASNWFTNYLGKP 133 (250)
Q Consensus 83 ~l~~~g~~~l~i~l~~~~~~~~~~~v~~~~~~~~d~g~~~~~wlS~~lg~~ 133 (250)
++++||++.+.+++.........+.+|++...+++||+++++|||++||+|
T Consensus 70 ~l~~~~~~~l~i~~~~~~~~~~~v~v~~~~~~~~~~gd~~~~WfS~~Lg~p 120 (120)
T PF03476_consen 70 TLSAPGMPPLEIPLPDSTGPRTEVQVWGDTVEAYDCGDEASEWFSEFLGRP 120 (120)
T ss_dssp EEE-SSS-EEEEESSSS-S-EEEEEETTEEEEEEE--HHHHHHHHHHT---
T ss_pred EEECCCCceEEEEcccccCCEeeEEEECCEeEEEECCHHHHHHHHHHHCcC
Confidence 999999999999998544566789999999999999999999999999986
No 5
>PF03473 MOSC: MOSC domain; InterPro: IPR005302 Molybdenum cofactor (MOCO) sulphurases [] catalyse the insertion of a terminal sulphur ligand into the molybdenum cofactor, thereby converting the oxo form of MOCO to a sulphurylated form. Suphurylated MOCO is required by several enzymes, including: aldehyde oxidase (1.2.3.1 from EC), which function in the last step of abscisic acid biosynthesis in plants []; and xanthine dehydrogenase (1.17.1.4 from EC), which synthesis uric acid from xanthine during nitrogen metabolism []. This entry represents the beta-barrel C-terminal domain of MOCO sulphurase (MOSC domain), which has a beta-barrel structure similar to that of the beta-barrel domain in pyruvate kinase and contains a highly conserved cysteine residue required for activity. MOSC domains are found in several diverse metal-sulphur cluster biosynthesis proteins from both eukaryotes and prokaryotes. MOSC domains occu as either stand-alone forms, such as the YiiM protein from Escherichia coli, or fused to other domains, such as a NifS-like catalytic domain in MOCO sulphurase. The MOSC domain is predicted to be a sulphur-carrier domain that receives sulphur abstracted from pyridoxal phosphate-dependent NifS-like enzymes, on its conserved cysteine, and delivers it for the formation of diverse sulphur-metal clusters []. The MOSC domain contains several patches of hydrophobic residues and an absolutely conserved cysteine residue situated closer to the C-terminal end of the domain. The absolutely conserved cysteine in the MOSC domain is reminiscent of the analogous conservation of a cysteine in the active site of the thioredoxin and rhodanese superfamilies. Members of both these superfamilies, especially of the latter one, have been implicated in the synthesis of Fe-S clusters, through mobilisation of sulphur with their active cysteine. ; GO: 0003824 catalytic activity, 0030151 molybdenum ion binding, 0030170 pyridoxal phosphate binding; PDB: 1ORU_B 1O67_C 1O65_C.
Probab=99.90 E-value=1.7e-24 Score=172.66 Aligned_cols=86 Identities=41% Similarity=0.579 Sum_probs=69.4
Q ss_pred CceeccCCCceeeeeHhHHHHHHhHhCCCC-CCccccceEEEcCCCCCCCCCc--ceEEECceEEEeecccCCeecCccc
Q 025604 156 EKIMFSDCYPFMLLSQGSLDALNKLLKEPI-PINRFRPNILVDGCEPFSEDLW--TGIRINNCTFQGVKLCDRCKRLFSR 232 (250)
Q Consensus 156 ~~~~f~D~~p~~lis~~Sl~~l~~~l~~~v-~~~RFRpNIvi~g~~pf~Ed~W--~~l~IG~~~l~v~~~c~RC~~~~vd 232 (250)
....|+|.+|++|+|.+|+++|+++++.+. +++||||||+|+|.+||+||.| ++++||++.|+++++|.||.++++|
T Consensus 11 ~~~~~~d~~~v~l~s~~s~~~l~~~~~~~~~~~~rFR~Nivv~g~~~f~Ed~w~~~~l~iG~~~l~v~~~~~rC~~~~~~ 90 (133)
T PF03473_consen 11 YKHHFGDERPVSLISQESLDALNARLGEPGLDPRRFRPNIVVDGLPPFDEDDWCGDRLRIGDAVLEVTQPCPRCVMPNVD 90 (133)
T ss_dssp -----GCGGSEEEEECHHHHHHHHHCCCCGGSCCCCT-SEEECS-T---TCCGBTEEEECTTEEEEEEEE----CHHHHH
T ss_pred CcccCCCCCceeeccHHHHHHHHhhhccccCCHhHCCCCEEEeccccccccccceeeeccCCEEEEEEeCcCCCCcccee
Confidence 467899999999999999999999999865 9999999999999999999999 9999999999999999999999999
Q ss_pred cccCccccC
Q 025604 233 CQLSIKTLV 241 (250)
Q Consensus 233 p~tg~~~~~ 241 (250)
|+||.++.+
T Consensus 91 ~~tg~~~~~ 99 (133)
T PF03473_consen 91 PDTGERDPE 99 (133)
T ss_dssp HCHCTCTST
T ss_pred eccCcccch
Confidence 999999765
No 6
>KOG2142 consensus Molybdenum cofactor sulfurase [Coenzyme transport and metabolism]
Probab=99.30 E-value=5.9e-13 Score=127.20 Aligned_cols=200 Identities=18% Similarity=0.191 Sum_probs=129.2
Q ss_pred EEeeeeeccccCcCCeeecceeeeecCccccCceeEEEEcCCceEeecCccceeeEEeecCCcccccCCCCCCCceEEEE
Q 025604 6 KVKSIFVYPIKSCRGISVCQQAPLTPTGFRWDRQWMVINNNGRAYTQRNEPKLALVETELPNEAFLEGWEPTGRSFMVIR 85 (250)
Q Consensus 6 ~V~~L~~yPIKS~~g~~v~~~~~l~~~Gl~~DR~f~l~~~~g~~lt~r~~p~L~~i~~~~~~~~~~~~~~~~~~~~l~l~ 85 (250)
.+..+..|||| |+.+++ +++.+...|+.+||.||++|-+|.+|++++++++.+|.+.+.. +.
T Consensus 465 ~d~~~~s~~~~-~~~~EI-~~~~~~~~gl~~~~s~m~~~~~~~alr~etE~e~~Li~~~~~~----------------~~ 526 (728)
T KOG2142|consen 465 FDAAVASYPIK-CAAFEI-EEENSGSQGLKYDRSWMSVDMNGSALRQETESELCLIGPRIKV----------------QE 526 (728)
T ss_pred hhhhhhhhhhh-hceeEe-eccCccccccccccccccccccccceeeecccceeeeccccch----------------hh
Confidence 34578899999 999999 9999999999999999999999999999999999999999852 11
Q ss_pred cCCCceEEEeccCCC--CCccceEEec-cccccccccHHHHHHHHhhhCCCe------EEEEecCCCCCCCCCcCccCCC
Q 025604 86 APGMQALKISLSKPR--DIADGVSVWE-WCGSALAEGAEASNWFTNYLGKPS------RLVRYNAESETRPVDPKYAAGE 156 (250)
Q Consensus 86 ~~g~~~l~i~l~~~~--~~~~~~~v~~-~~~~~~d~g~~~~~wlS~~lg~~~------rLv~~~~~~~~r~~~~~~~~~~ 156 (250)
..+++ .+|+++..- .....+.++. .+.+++|+++....|+++-.|+.. .| +..+... .
T Consensus 527 d~~~~-~~vs~~~sl~~~~a~~~s~~d~~~c~~iDh~~~lgln~t~~r~r~ll~wl~~sl-~~~~~~~-------~---- 593 (728)
T KOG2142|consen 527 DEQSE-RRVSFPTSLEQGEASKCSSYDCPPCRGIDHVDSLGLNLTTNRGRELLNWLVQSL-RNLQHSE-------S---- 593 (728)
T ss_pred hcccc-eeecchhhhhhhhhhhcccccCccccccchhhhhhHHhhhhhhhhHHHHHHHhc-ccccccc-------c----
Confidence 11122 333332110 1111122211 346789999999999998777651 12 1110000 0
Q ss_pred ceeccCCCceeeeeHhHHHHHHhHhCCCCCCccccceEEEcCCCCCCCCCcceEEECceEEEeecccCCeecCccccccC
Q 025604 157 KIMFSDCYPFMLLSQGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLWTGIRINNCTFQGVKLCDRCKRLFSRCQLS 236 (250)
Q Consensus 157 ~~~f~D~~p~~lis~~Sl~~l~~~l~~~v~~~RFRpNIvi~g~~pf~Ed~W~~l~IG~~~l~v~~~c~RC~~~~vdp~tg 236 (250)
.....+...+...+....+-.+....-.--..|||.||||++...|+|-.|..+-||...|.+ ||.| ++|+.+|
T Consensus 594 ~~~~~nlvq~ygpk~~~erG~~~~fnl~d~~~~fr~p~IV~~lae~E~isl~~~~l~~iri~d--p~~r----~~dq~~~ 667 (728)
T KOG2142|consen 594 SSTTVNLVQIYGPKTKYERGPAVAFNLFDLSKRFRAPIIVNKLAEREEISLGELSLGHIRIQD--PCHR----DIDQLLG 667 (728)
T ss_pred ccccccceeeecCccccccChhheeehhhhhccccchhhhcchhhhhcccccceeeeeeEEec--Ccch----hhhHHhh
Confidence 000000001111111111000000000112679999999999999999999999999999988 8999 6789999
Q ss_pred ccccCC
Q 025604 237 IKTLVL 242 (250)
Q Consensus 237 ~~~~~~ 242 (250)
.|..+.
T Consensus 668 ~r~~~~ 673 (728)
T KOG2142|consen 668 QRRGRT 673 (728)
T ss_pred hhcccc
Confidence 887764
No 7
>PRK14499 molybdenum cofactor biosynthesis protein MoaC/MOSC-domain-containing protein; Provisional
Probab=97.10 E-value=0.00094 Score=60.57 Aligned_cols=61 Identities=15% Similarity=0.265 Sum_probs=51.5
Q ss_pred CceeeeeHhHHHHHHhHhCCC-CCCccccceEEEcCCCCCCCCCc---ceEEECc-eEEEeecccCCeec
Q 025604 164 YPFMLLSQGSLDALNKLLKEP-IPINRFRPNILVDGCEPFSEDLW---TGIRINN-CTFQGVKLCDRCKR 228 (250)
Q Consensus 164 ~p~~lis~~Sl~~l~~~l~~~-v~~~RFRpNIvi~g~~pf~Ed~W---~~l~IG~-~~l~v~~~c~RC~~ 228 (250)
..+++++.++++.++ .++.+ +++-.||.||+++|.. |.+- .+++||+ +.|++..+|..|..
T Consensus 203 RqVsl~~~E~~~~~~-~~g~~~l~pG~fGENLtv~Gid---l~~l~iGdrlrIG~~avLeVt~pr~PC~~ 268 (308)
T PRK14499 203 RQVSLLDISSIKKME-EYGLKGLCFGKFAENITTENLD---LQKISLGTKLKIGDNVVLEISQIGKKCHG 268 (308)
T ss_pred ceEEEcCHHHHHHHH-hcCCcCCCcccccceEEEcCcC---HHHCCCCCEEEECCcEEEEEEeCCCCCcC
Confidence 368999999999987 45555 8999999999999973 3333 8999999 99999999999973
No 8
>COG2258 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.34 E-value=0.35 Score=41.54 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=56.3
Q ss_pred ceeeeeHhHHHHHHhHhCCCCCCccccceEEEcCCCCCCCCCc---ceEEECceEEEeecccCCeecCcc
Q 025604 165 PFMLLSQGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLW---TGIRINNCTFQGVKLCDRCKRLFS 231 (250)
Q Consensus 165 p~~lis~~Sl~~l~~~l~~~v~~~RFRpNIvi~g~~pf~Ed~W---~~l~IG~~~l~v~~~c~RC~~~~v 231 (250)
.+.+.+...++.....++..+.+-=|+=||.++|. .|.+- .+++||++.|+|..++.-|.-.+.
T Consensus 56 Av~~y~~ehy~~w~~~lg~~l~pg~fGENltt~Gl---~e~~l~iGdr~riG~allEVSqpR~PC~~l~~ 122 (210)
T COG2258 56 AVCHYPREHYAAWETLLGRGLQPGAFGENLTTSGL---DEANLCIGDRFRIGEALLEVTQPRKPCSKLNK 122 (210)
T ss_pred eEEEccHHHHHHHHHHhCCCCCcccccCceeecCc---chhhccccCEEEeccEEEEecCCCCchHHHHH
Confidence 57889999999999999999999999999999996 46656 799999999999999999976554
No 9
>PRK11536 6-N-hydroxylaminopurine resistance protein; Provisional
Probab=89.58 E-value=0.98 Score=39.22 Aligned_cols=62 Identities=16% Similarity=0.139 Sum_probs=52.1
Q ss_pred ceeeeeHhHHHHHHhHhCC---CCCCccccceEEEcCCCCCCCCCc---ceEEECceEEEeecccCCeecC
Q 025604 165 PFMLLSQGSLDALNKLLKE---PIPINRFRPNILVDGCEPFSEDLW---TGIRINNCTFQGVKLCDRCKRL 229 (250)
Q Consensus 165 p~~lis~~Sl~~l~~~l~~---~v~~~RFRpNIvi~g~~pf~Ed~W---~~l~IG~~~l~v~~~c~RC~~~ 229 (250)
.+++.+.++.+..++.++. .+..--|==||.++|. .|++- ..++||++.|+|..|+.-|--.
T Consensus 56 AV~~y~~e~y~~w~~~~~~~~~~l~~G~fGENLtv~Gl---~e~~v~IGD~~riG~avleVsqpR~PC~kl 123 (223)
T PRK11536 56 ALCHYPREHYLYWAREFPEQAELFVAPAFGENLSTDGL---TESNVFIGDIFRWGEALIQVTQPRSPCYKL 123 (223)
T ss_pred eEEEcCHhHHHHHHHHccccccccCCCCccCCEEecCc---ChhhCCccCEEEECCEEEEEecCCCCCCch
Confidence 5899999999999988854 4556679999999984 56666 8999999999999999999544
No 10
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=57.13 E-value=37 Score=28.35 Aligned_cols=51 Identities=24% Similarity=0.407 Sum_probs=35.9
Q ss_pred ceEEeeeeeccccC---cCCeeecceeeeecCc-c----ccCceeEEEEcCCceEeecCc
Q 025604 4 AAKVKSIFVYPIKS---CRGISVCQQAPLTPTG-F----RWDRQWMVINNNGRAYTQRNE 55 (250)
Q Consensus 4 ~~~V~~L~~yPIKS---~~g~~v~~~~~l~~~G-l----~~DR~f~l~~~~g~~lt~r~~ 55 (250)
-|+=.+|++||-.+ -=.-++ +.|++...| | -+||.+++++++|-.++....
T Consensus 15 gG~T~Ei~~~P~~~~~~~F~wRi-S~A~V~~~g~FS~FpG~~R~l~~L~G~gl~L~~~~~ 73 (184)
T PF05962_consen 15 GGTTREIAIYPEGSAKRDFDWRI-SIATVEADGPFSDFPGYDRILTLLEGNGLRLTHDGQ 73 (184)
T ss_dssp SEEEEEEEE-SSSCCCCC-SEEE-EEEEE-SSEEE---TT-EEEEEEEESS-EEEEETTC
T ss_pred CeEEEEEEEcCCCCccCCceEEE-EEEEEcCCCCCCCCCCCcEEEEEEeCCcEEEecCCC
Confidence 46678999999876 223478 889999888 3 259999999998887777655
No 11
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=41.92 E-value=13 Score=30.62 Aligned_cols=28 Identities=36% Similarity=0.464 Sum_probs=18.3
Q ss_pred CccccceEEEcCCC-----CCC-----CCCcceEEECc
Q 025604 187 INRFRPNILVDGCE-----PFS-----EDLWTGIRINN 214 (250)
Q Consensus 187 ~~RFRpNIvi~g~~-----pf~-----Ed~W~~l~IG~ 214 (250)
++|-||||+|.|.+ -+. .-..+.|-||+
T Consensus 3 ~~r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd 40 (176)
T KOG3347|consen 3 PERERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISD 40 (176)
T ss_pred hhhcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhh
Confidence 46999999999853 122 22446677765
No 12
>PRK14499 molybdenum cofactor biosynthesis protein MoaC/MOSC-domain-containing protein; Provisional
Probab=35.61 E-value=46 Score=30.36 Aligned_cols=37 Identities=30% Similarity=0.255 Sum_probs=31.8
Q ss_pred CCceEEeeeeeccccCcCCeeecceeee-ecCccccCce
Q 025604 2 EAAAKVKSIFVYPIKSCRGISVCQQAPL-TPTGFRWDRQ 39 (250)
Q Consensus 2 ~~~~~V~~L~~yPIKS~~g~~v~~~~~l-~~~Gl~~DR~ 39 (250)
.+|++|.+|++.|-++..=.++ ++..+ ...|+.+|+.
T Consensus 160 ~~~~~VlsI~is~~~gi~K~~v-~~~~~v~~~GieGD~H 197 (308)
T PRK14499 160 NKTAKVVSINISRQKGTPKEPV-EEAVLIENHGIEGDAH 197 (308)
T ss_pred CCCCEEEEEEeCCCCCccceec-CceEEEccCCCCCCcC
Confidence 3588999999999999999999 87755 5689999984
No 13
>KOG2362 consensus Uncharacterized Fe-S protein [General function prediction only]
Probab=30.05 E-value=38 Score=30.86 Aligned_cols=48 Identities=0% Similarity=-0.343 Sum_probs=29.1
Q ss_pred cCcCCeeecceeeeecCc----cccCceeEEEEcCCceEeecCccceeeEEeec
Q 025604 16 KSCRGISVCQQAPLTPTG----FRWDRQWMVINNNGRAYTQRNEPKLALVETEL 65 (250)
Q Consensus 16 KS~~g~~v~~~~~l~~~G----l~~DR~f~l~~~~g~~lt~r~~p~L~~i~~~~ 65 (250)
+++-+.-. .+++....+ ... +-|++....+-.+++.+.+....+.-..
T Consensus 63 q~~ct~~g-~~~e~~~DR~~lvVn~-kg~~iTaRv~P~l~~ies~~~~~~~~v~ 114 (336)
T KOG2362|consen 63 QYKCTPLG-PSMEFLWDRTFLVVNE-KGKFITARVKPKLVLIESEMPDGAFLVD 114 (336)
T ss_pred HhhcCCCC-cchhheeeceEEEEec-cceEEEeeccceEEEeecccccceeEEe
Confidence 44444444 444444433 233 7888888888888888877765554443
No 14
>cd00175 SNc Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds.
Probab=24.83 E-value=3e+02 Score=20.65 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=32.4
Q ss_pred CceEEEEcCCCceEEEeccCCCCCc--cceEEeccccccccccHHHHHHHHhhh-CCCeEEEEec
Q 025604 79 RSFMVIRAPGMQALKISLSKPRDIA--DGVSVWEWCGSALAEGAEASNWFTNYL-GKPSRLVRYN 140 (250)
Q Consensus 79 ~~~l~l~~~g~~~l~i~l~~~~~~~--~~~~v~~~~~~~~d~g~~~~~wlS~~l-g~~~rLv~~~ 140 (250)
++++.+..++...+.|.|.-...+. ..+. ........+|.+|.+|+.+.+ ++.|.+....
T Consensus 5 GDt~~v~~~~~~~~~vrL~gId~Pe~~~~~~--~~~~~~~~~g~~A~~~l~~~l~~~~V~i~~~~ 67 (129)
T cd00175 5 GDTIRVRLPPGPLITVRLSGIDAPETARPNK--GKSETDEPFGEEAKEFLKKLLLGKKVQVEVDS 67 (129)
T ss_pred CcEEEEEeCCCCEEEEEEEeecCccccCCcc--CCCCCCCchHHHHHHHHHHHhCCCEEEEEEcc
Confidence 4466666655545555553211100 0000 112334678999999999977 5567665543
No 15
>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=24.36 E-value=26 Score=32.49 Aligned_cols=24 Identities=8% Similarity=0.039 Sum_probs=20.3
Q ss_pred ecccCCeecCccccccCccccCCC
Q 025604 220 VKLCDRCKRLFSRCQLSIKTLVLL 243 (250)
Q Consensus 220 ~~~c~RC~~~~vdp~tg~~~~~~l 243 (250)
...|.||.+++-|++||+-+.+..
T Consensus 172 lntikRcllinyn~dt~eIdmRHy 195 (405)
T KOG2963|consen 172 LNTIKRCLLINYNRDTGEIDMRHY 195 (405)
T ss_pred ccceeEEEEEecCCCCCeeeeeee
Confidence 456889999999999999887654
No 16
>smart00318 SNc Staphylococcal nuclease homologues.
Probab=20.79 E-value=3.9e+02 Score=20.37 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=19.3
Q ss_pred cccccHHHHHHHHhhh-CCCeEEEEec
Q 025604 115 ALAEGAEASNWFTNYL-GKPSRLVRYN 140 (250)
Q Consensus 115 ~~d~g~~~~~wlS~~l-g~~~rLv~~~ 140 (250)
...+|.+|.+||.+.| |+++.+....
T Consensus 49 ~~~~g~~A~~~l~~~l~g~~V~~~~~~ 75 (138)
T smart00318 49 DEPFGEEAKEFLKKLLLGKKVQVEVDS 75 (138)
T ss_pred cCcHHHHHHHHHHHHhCCCEEEEEEec
Confidence 3578999999999977 5667666543
Done!