Query 025604
Match_columns 250
No_of_seqs 132 out of 1066
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 13:43:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025604.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025604hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2exn_A Hypothetical protein BO 100.0 3.7E-34 1.3E-38 228.7 10.8 124 7-150 1-127 (136)
2 1oru_A YUAD protein; structura 99.5 1.5E-13 5.1E-18 115.5 12.3 70 164-233 67-141 (195)
3 1o65_A Hypothetical protein YI 98.2 1.1E-06 3.7E-11 76.0 5.7 66 165-232 68-138 (246)
4 3esg_A HUTD, putative uncharac 44.7 57 0.0019 26.5 6.6 50 4-54 28-84 (193)
5 2gdl_A Myeloid antimicrobial p 20.8 21 0.00073 19.5 0.1 11 186-196 13-23 (31)
6 1n0x_P B2.1 peptide, immunoglo 19.3 59 0.002 17.1 1.6 18 36-53 1-18 (26)
7 3lyd_A Uncharacterized protein 17.4 39 0.0013 26.6 0.9 12 186-197 45-56 (161)
8 2rhf_A DNA helicase RECQ; HRDC 12.4 68 0.0023 21.4 1.0 23 161-183 22-44 (77)
9 2jl6_1 50S ribosomal protein L 11.9 43 0.0015 23.8 -0.3 25 186-212 38-62 (89)
10 2jz6_A 50S ribosomal protein L 11.9 59 0.002 22.4 0.5 35 185-228 29-64 (77)
No 1
>2exn_A Hypothetical protein BOR11; beta barrel containing fold, autostructure, autoassign, structure, structural genomics, PSI; NMR {Bordetella bronchiseptica} SCOP: b.165.1.1
Probab=100.00 E-value=3.7e-34 Score=228.72 Aligned_cols=124 Identities=27% Similarity=0.473 Sum_probs=110.5
Q ss_pred EeeeeeccccCcCCeeecceeeeecCccccCceeEEEEcCCceEeecCccceeeEEeecCCcccccCCCCCCCceEEEEc
Q 025604 7 VKSIFVYPIKSCRGISVCQQAPLTPTGFRWDRQWMVINNNGRAYTQRNEPKLALVETELPNEAFLEGWEPTGRSFMVIRA 86 (250)
Q Consensus 7 V~~L~~yPIKS~~g~~v~~~~~l~~~Gl~~DR~f~l~~~~g~~lt~r~~p~L~~i~~~~~~~~~~~~~~~~~~~~l~l~~ 86 (250)
|++||+||||||+|++| +++. .+||+|||+|++|+|+|||++|+|++|++.++. +.|+|++
T Consensus 1 v~~L~iYPIKSc~g~~l-~~a~------~~DR~wmlvd~~G~~lt~r~~P~Lali~~~~~~------------~~L~l~~ 61 (136)
T 2exn_A 1 MSTTAYQPIAECGATTQ-SEAA------AYQKRWLVANDAGQWLNRDLCPRLAEVSVELRM------------GYLVLKA 61 (136)
T ss_dssp CCCCCEEEETTTEEECC-GGGG------GTCCSEEEEETTSCEECTTTCGGGGCCEEEECS------------SEEEEEC
T ss_pred CceEEEeccccCCceec-CccC------ccCCcEEEEeCCCCEEEccCCccccEEEEEecC------------CEEEEEe
Confidence 67999999999999999 9987 999999999999999999999999999999963 4799999
Q ss_pred CCCceEEEeccCCC---CCccceEEeccccccccccHHHHHHHHhhhCCCeEEEEecCCCCCCCCCc
Q 025604 87 PGMQALKISLSKPR---DIADGVSVWEWCGSALAEGAEASNWFTNYLGKPSRLVRYNAESETRPVDP 150 (250)
Q Consensus 87 ~g~~~l~i~l~~~~---~~~~~~~v~~~~~~~~d~g~~~~~wlS~~lg~~~rLv~~~~~~~~r~~~~ 150 (250)
||++++.|++.+.. .....++||++.+.+++||+++++|||+|||+|++|+++++... |..++
T Consensus 62 pg~~~l~vpl~~~~~~~~~~~~v~vw~~~~~a~d~g~~~~~W~S~~Lg~p~rLv~~~~~~~-R~~~~ 127 (136)
T 2exn_A 62 PGMLRLDIPLDVIEDDDSVRYQMLVGEQTVDVVDEGELAAAWISNHAGVPCRILKVHPDMA-EVRWP 127 (136)
T ss_dssp SSSCEEEEESSCCCSSCSCEEEEEETTEEEEEEECCHHHHHHHHHHTCSSEEEEEECTTTC-CCCCC
T ss_pred CCCceEEEECCCccccccCceeEEEeCCcceeEeccHHHHHHHHHHhCCCeEEEEcCCCCc-cccCc
Confidence 99999999997653 13456899999999999999999999999999999999987654 44444
No 2
>1oru_A YUAD protein; structural genomics, cytosolic hypothetical protein, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.80A {Bacillus subtilis} SCOP: b.58.1.2
Probab=99.50 E-value=1.5e-13 Score=115.48 Aligned_cols=70 Identities=14% Similarity=0.106 Sum_probs=61.5
Q ss_pred CceeeeeHhHHHHHHhHhCCC-CCCccccceEEEcCC-CCCCCCCcceEEECc-eEEEeecccCCeecC--cccc
Q 025604 164 YPFMLLSQGSLDALNKLLKEP-IPINRFRPNILVDGC-EPFSEDLWTGIRINN-CTFQGVKLCDRCKRL--FSRC 233 (250)
Q Consensus 164 ~p~~lis~~Sl~~l~~~l~~~-v~~~RFRpNIvi~g~-~pf~Ed~W~~l~IG~-~~l~v~~~c~RC~~~--~vdp 233 (250)
.+++|++.+|++++++.++.+ +++.+||+||+++|. ..++++-+++++||+ +.|+|.++|.||..+ ++++
T Consensus 67 r~V~l~~~e~~~~~~~~~g~~~l~~g~fgeNl~v~Gi~~~~~l~iG~~l~iG~~a~leVt~~~~pC~~~~~~i~~ 141 (195)
T 1oru_A 67 RQISIVSIEECNEIALKMGVPRILPEWLGANVAVSGMPDLTSLKEGSRIIFPSGAALLCEGENDPCIQPGEVIQS 141 (195)
T ss_dssp CCEEEEEHHHHHHHHHHHTCSCCCGGGGTCSEEEESCTTGGGCCTTCEEECTTSCEEEEEEECCCCHHHHHHHHH
T ss_pred ceEEECCHHHHHHHHHHcCCCCCCcccccCCEEEeCCCChhhCCCCCEEEECCCEEEEEeeccCCCCCCccccch
Confidence 479999999999999998876 999999999999998 556666679999997 999999999999984 4444
No 3
>1o65_A Hypothetical protein YIIM; structural genomics, unknown function; 2.33A {Escherichia coli} SCOP: b.58.1.2 PDB: 1o67_A
Probab=98.24 E-value=1.1e-06 Score=76.02 Aligned_cols=66 Identities=14% Similarity=0.146 Sum_probs=58.2
Q ss_pred ceeeeeHhHHHHHHhHhCC---CCCCccccceEEEcCCCCCCCCCc--ceEEECceEEEeecccCCeecCccc
Q 025604 165 PFMLLSQGSLDALNKLLKE---PIPINRFRPNILVDGCEPFSEDLW--TGIRINNCTFQGVKLCDRCKRLFSR 232 (250)
Q Consensus 165 p~~lis~~Sl~~l~~~l~~---~v~~~RFRpNIvi~g~~pf~Ed~W--~~l~IG~~~l~v~~~c~RC~~~~vd 232 (250)
.+++++.+|++.+++.++. .+++-+||-||+++|.. +++-| .+++||++.|+|+.+|.+|..++..
T Consensus 68 qV~l~~~E~~~~~~~~~g~~~~~l~pg~fgENLtv~Gl~--~~~l~iG~rlrIG~avLeVTq~r~PC~~~~~~ 138 (246)
T 1o65_A 68 ALCHYPREHYLYWAREFPEQAELFVAPAFGENLSTDGLT--ESNVYMGDIFRWGEALIQVSQPRSPCYKLNYH 138 (246)
T ss_dssp SEEEEETHHHHHHHHHCGGGGGGCSTTTTCCSEEESSCC--TTTCBTTCEEEETTEEEEEEEECCCCTHHHHH
T ss_pred eEEECCHHHHHHHHHHhCCCcccCCcccccCCEEECCcc--hhhCCCCCEEEECCEEEEEEeCcCccHhHHHH
Confidence 5999999999999998876 48999999999999974 44557 8999999999999999999987665
No 4
>3esg_A HUTD, putative uncharacterized protein; beta barrel, unknown function; 1.80A {Pseudomonas fluorescens} SCOP: b.82.1.0
Probab=44.72 E-value=57 Score=26.50 Aligned_cols=50 Identities=20% Similarity=0.245 Sum_probs=38.7
Q ss_pred ceEEeeeeeccccCcCC--eeecceeeeecCc-c----ccCceeEEEEcCCceEeecC
Q 025604 4 AAKVKSIFVYPIKSCRG--ISVCQQAPLTPTG-F----RWDRQWMVINNNGRAYTQRN 54 (250)
Q Consensus 4 ~~~V~~L~~yPIKS~~g--~~v~~~~~l~~~G-l----~~DR~f~l~~~~g~~lt~r~ 54 (250)
-|+=.+|++||-.+.+. -++ +.|++...| | -+||..++++++|-.++...
T Consensus 28 gG~TrEI~~~P~~~~~~F~wRi-SiA~V~~~g~FS~FpG~dR~l~lL~G~gl~L~~~g 84 (193)
T 3esg_A 28 GGSTEEITRDAGTGLEGFGWRL-SIADIGESGGFSSFAGYQRVITVIQGAGMVLTVDG 84 (193)
T ss_dssp SEEEEEEEECCCBTTTBCSEEE-EEEEECSSEECCCCTTCEEEEEEEESSCEEEEETT
T ss_pred CeEEEEEEEcCCCcCCCceEEE-EEEEEcCCCCCCCCCCceEEEEEEcCCcEEEEeCC
Confidence 35667999999875544 577 889999887 3 36999999999887777644
No 5
>2gdl_A Myeloid antimicrobial peptide 27; cathelicidin, alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=20.82 E-value=21 Score=19.54 Aligned_cols=11 Identities=45% Similarity=1.011 Sum_probs=8.3
Q ss_pred CCccccceEEE
Q 025604 186 PINRFRPNILV 196 (250)
Q Consensus 186 ~~~RFRpNIvi 196 (250)
.++||||.+-|
T Consensus 13 kirrfrpkvti 23 (31)
T 2gdl_A 13 KIRRFRPKVTI 23 (31)
T ss_dssp SCCCCTTCCHH
T ss_pred HHHhcCCceEE
Confidence 47899997654
No 6
>1n0x_P B2.1 peptide, immunoglobulin heavy chain; antibody-peptide complex, peptide dimer, immune system; HET: CXS; 1.80A {Homo sapiens}
Probab=19.33 E-value=59 Score=17.09 Aligned_cols=18 Identities=17% Similarity=0.359 Sum_probs=14.1
Q ss_pred cCceeEEEEcCCceEeec
Q 025604 36 WDRQWMVINNNGRAYTQR 53 (250)
Q Consensus 36 ~DR~f~l~~~~g~~lt~r 53 (250)
+.|.||+.|-.++++.+.
T Consensus 1 hersymfsdlenrciaae 18 (26)
T 1n0x_P 1 HERSYMFSDLENRCIAAE 18 (26)
T ss_dssp CCCCEEEETTTTEEEECS
T ss_pred CcchhhhhHHHHHHHHHH
Confidence 368899999888887654
No 7
>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}
Probab=17.41 E-value=39 Score=26.64 Aligned_cols=12 Identities=42% Similarity=0.733 Sum_probs=9.7
Q ss_pred CCccccceEEEc
Q 025604 186 PINRFRPNILVD 197 (250)
Q Consensus 186 ~~~RFRpNIvi~ 197 (250)
-..-||||+||.
T Consensus 45 ~~~~F~pN~vVt 56 (161)
T 3lyd_A 45 PPQGFTPNIIGT 56 (161)
T ss_dssp CCSSSCCEEEEE
T ss_pred CCCCccccEEEE
Confidence 356799999986
No 8
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=12.40 E-value=68 Score=21.40 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=19.6
Q ss_pred cCCCceeeeeHhHHHHHHhHhCC
Q 025604 161 SDCYPFMLLSQGSLDALNKLLKE 183 (250)
Q Consensus 161 ~D~~p~~lis~~Sl~~l~~~l~~ 183 (250)
.|..|+.|++.++|.++....+.
T Consensus 22 ~~vpp~~I~~d~~L~~iA~~~P~ 44 (77)
T 2rhf_A 22 TGYSAFVVFTNATLEALAARQPR 44 (77)
T ss_dssp HCCCHHHHCCHHHHHHHHHHCCC
T ss_pred cCCCcceeeCHHHHHHHHHhCCC
Confidence 35568999999999999998875
No 9
>2jl6_1 50S ribosomal protein L28, 50S ribosomal protein L25; methylation, translation, paromomycin, tRNA-binding, tRNA, zinc, mRNA, ribosome, repressor, RNA-binding; 3.45A {Thermus thermophilus} PDB: 2jl8_1
Probab=11.92 E-value=43 Score=23.83 Aligned_cols=25 Identities=16% Similarity=0.019 Sum_probs=14.6
Q ss_pred CCccccceEEEcCCCCCCCCCcceEEE
Q 025604 186 PINRFRPNILVDGCEPFSEDLWTGIRI 212 (250)
Q Consensus 186 ~~~RFRpNIvi~g~~pf~Ed~W~~l~I 212 (250)
.-++|+|||-=-- -|.|..|.+|++
T Consensus 38 TkR~f~PNLqkvr--~~~~g~~~rl~V 62 (89)
T 2jl6_1 38 SKRRQYPNLQKVR--VRVAGQEITFRV 62 (89)
T ss_dssp EEEEECCCBCCBC--CEETTEECCBCC
T ss_pred cceEEccccEEEE--EEECCEEEEEEE
Confidence 5789999985332 244444544433
No 10
>2jz6_A 50S ribosomal protein L28; structure, NESG, ribonucleoprotein, structural genomics, PSI-2, protein structure initiative; NMR {Thermotoga maritima MSB8} SCOP: d.325.1.1
Probab=11.85 E-value=59 Score=22.40 Aligned_cols=35 Identities=14% Similarity=0.137 Sum_probs=19.8
Q ss_pred CCCccccceEEEcCCCCCCC-CCcceEEECceEEEeecccCCeec
Q 025604 185 IPINRFRPNILVDGCEPFSE-DLWTGIRINNCTFQGVKLCDRCKR 228 (250)
Q Consensus 185 v~~~RFRpNIvi~g~~pf~E-d~W~~l~IG~~~l~v~~~c~RC~~ 228 (250)
-.-+||.|||-=--. |.| ..| ..++|...|-|+.-
T Consensus 29 kTkR~~~PNLq~vr~--~~~~g~~-------~rl~Vst~~LRtgk 64 (77)
T 2jz6_A 29 KSERWFRPNLQKVRV--VLPDGTI-------KRMRVCTSCLKSGK 64 (77)
T ss_dssp CCSSSCBTTEEEEEE--EETTTEE-------EEEEEEHHHHHHCC
T ss_pred ccCcccccceEEEEE--EecCCcE-------EEEEEEhHHeeecc
Confidence 468999999964322 332 233 34455555555544
Done!