Query 025607
Match_columns 250
No_of_seqs 254 out of 1754
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 07:34:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025607.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025607hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 99.8 2.2E-21 4.7E-26 171.9 2.0 174 6-179 72-257 (483)
2 KOG4341 F-box protein containi 99.7 4E-19 8.6E-24 157.7 -0.1 144 36-179 162-309 (483)
3 KOG2120 SCF ubiquitin ligase, 99.6 1.1E-16 2.5E-21 137.1 5.4 171 6-178 98-352 (419)
4 KOG1947 Leucine rich repeat pr 99.5 2.6E-14 5.6E-19 132.1 10.1 160 49-219 173-339 (482)
5 KOG1947 Leucine rich repeat pr 99.5 6E-14 1.3E-18 129.7 9.7 140 36-175 186-332 (482)
6 KOG2120 SCF ubiquitin ligase, 99.4 3E-13 6.6E-18 116.3 6.0 141 36-178 232-377 (419)
7 cd00116 LRR_RI Leucine-rich re 99.3 4.9E-11 1.1E-15 104.8 16.3 136 38-175 108-261 (319)
8 cd00116 LRR_RI Leucine-rich re 99.3 8.6E-11 1.9E-15 103.3 14.4 137 37-175 80-232 (319)
9 KOG3665 ZYG-1-like serine/thre 98.8 1.9E-08 4.1E-13 97.7 10.0 166 25-207 108-281 (699)
10 KOG1909 Ran GTPase-activating 98.7 1E-07 2.3E-12 83.8 10.2 140 36-176 155-310 (382)
11 KOG3207 Beta-tubulin folding c 98.7 5.5E-09 1.2E-13 94.1 2.1 138 39-179 122-261 (505)
12 KOG1909 Ran GTPase-activating 98.6 1.8E-07 4E-12 82.3 9.8 142 37-179 91-256 (382)
13 KOG3207 Beta-tubulin folding c 98.4 2.7E-07 5.8E-12 83.4 4.4 126 49-178 103-236 (505)
14 PF14580 LRR_9: Leucine-rich r 98.3 8.7E-08 1.9E-12 77.9 -0.5 111 58-174 36-150 (175)
15 PF14580 LRR_9: Leucine-rich r 98.3 1.6E-07 3.4E-12 76.4 0.0 141 52-209 5-148 (175)
16 PLN00113 leucine-rich repeat r 98.2 2.1E-06 4.7E-11 86.7 5.4 38 137-175 210-247 (968)
17 KOG3665 ZYG-1-like serine/thre 98.1 3.6E-06 7.9E-11 82.0 5.7 112 65-179 123-235 (699)
18 KOG0618 Serine/threonine phosp 98.1 2E-06 4.4E-11 83.9 3.0 119 49-178 369-490 (1081)
19 PLN00113 leucine-rich repeat r 98.1 4.4E-06 9.5E-11 84.5 5.1 86 62-151 162-248 (968)
20 KOG3864 Uncharacterized conser 97.9 1.3E-05 2.7E-10 66.0 4.3 85 92-178 103-190 (221)
21 KOG3864 Uncharacterized conser 97.8 2.7E-05 5.9E-10 64.1 3.9 79 66-147 103-184 (221)
22 PLN03210 Resistant to P. syrin 97.7 4.3E-05 9.4E-10 78.9 4.6 106 62-179 800-908 (1153)
23 COG5238 RNA1 Ran GTPase-activa 97.6 0.0014 3.1E-08 56.6 12.0 65 115-179 185-257 (388)
24 smart00367 LRR_CC Leucine-rich 97.6 9.1E-05 2E-09 40.7 2.9 24 63-86 1-24 (26)
25 KOG4194 Membrane glycoprotein 97.5 5.6E-05 1.2E-09 71.1 2.5 86 90-179 341-431 (873)
26 COG5238 RNA1 Ran GTPase-activa 97.4 0.0022 4.9E-08 55.5 11.2 40 137-176 183-226 (388)
27 PLN03210 Resistant to P. syrin 97.4 0.00012 2.7E-09 75.6 4.2 108 63-180 777-885 (1153)
28 smart00367 LRR_CC Leucine-rich 97.2 0.00032 6.8E-09 38.5 2.6 24 89-112 1-25 (26)
29 KOG2982 Uncharacterized conser 97.2 0.00021 4.5E-09 62.4 2.3 108 66-174 47-156 (418)
30 KOG2123 Uncharacterized conser 97.2 0.00021 4.5E-09 61.8 2.2 98 65-170 20-123 (388)
31 KOG2982 Uncharacterized conser 97.1 0.00023 4.9E-09 62.2 2.1 157 40-211 47-209 (418)
32 PLN03150 hypothetical protein; 97.0 0.00073 1.6E-08 65.5 4.8 108 66-177 420-528 (623)
33 PF13855 LRR_8: Leucine rich r 96.8 5.9E-05 1.3E-09 50.1 -3.4 11 163-173 48-58 (61)
34 PF13855 LRR_8: Leucine rich r 96.7 6.2E-05 1.3E-09 50.0 -3.9 60 90-151 1-61 (61)
35 PF12799 LRR_4: Leucine Rich r 96.6 0.0025 5.5E-08 39.6 3.0 37 64-103 1-37 (44)
36 PF12799 LRR_4: Leucine Rich r 96.5 0.0021 4.6E-08 39.9 2.2 35 139-175 1-35 (44)
37 KOG2739 Leucine-rich acidic nu 96.5 0.0017 3.7E-08 55.4 2.4 85 115-211 65-153 (260)
38 KOG1259 Nischarin, modulator o 96.4 0.0022 4.7E-08 56.3 2.6 106 62-177 305-412 (490)
39 KOG4308 LRR-containing protein 96.3 0.002 4.4E-08 60.4 2.2 143 36-180 113-278 (478)
40 PF13516 LRR_6: Leucine Rich r 96.2 0.0036 7.8E-08 33.4 1.9 22 90-111 2-23 (24)
41 KOG4194 Membrane glycoprotein 96.2 0.0025 5.4E-08 60.4 1.7 14 161-174 218-231 (873)
42 KOG2739 Leucine-rich acidic nu 96.1 0.0022 4.9E-08 54.7 1.2 110 63-177 42-156 (260)
43 KOG0444 Cytoskeletal regulator 96.0 0.0013 2.7E-08 62.9 -0.9 57 137-209 243-299 (1255)
44 PLN03150 hypothetical protein; 95.9 0.0062 1.3E-07 59.2 3.4 83 91-176 419-502 (623)
45 PF13516 LRR_6: Leucine Rich r 95.8 0.0055 1.2E-07 32.7 1.5 22 139-160 2-23 (24)
46 KOG2123 Uncharacterized conser 95.6 0.0052 1.1E-07 53.4 1.4 100 85-190 11-114 (388)
47 KOG1859 Leucine-rich repeat pr 95.6 0.00079 1.7E-08 65.0 -4.0 102 64-175 187-290 (1096)
48 KOG1644 U2-associated snRNP A' 95.6 0.0051 1.1E-07 51.0 1.2 88 86-175 60-151 (233)
49 KOG0444 Cytoskeletal regulator 95.5 0.00091 2E-08 63.8 -3.8 22 137-158 289-310 (1255)
50 KOG4308 LRR-containing protein 95.2 0.017 3.6E-07 54.3 3.3 141 37-179 171-333 (478)
51 KOG4658 Apoptotic ATPase [Sign 95.1 0.031 6.6E-07 56.4 4.9 132 35-174 542-678 (889)
52 KOG0618 Serine/threonine phosp 94.9 0.0048 1E-07 61.1 -1.3 109 87-211 307-440 (1081)
53 PRK15387 E3 ubiquitin-protein 94.6 0.024 5.3E-07 56.2 2.7 74 91-176 383-457 (788)
54 smart00368 LRR_RI Leucine rich 94.1 0.066 1.4E-06 29.7 2.8 24 139-162 2-25 (28)
55 PRK15387 E3 ubiquitin-protein 94.0 0.051 1.1E-06 54.0 3.8 34 115-153 282-316 (788)
56 KOG1859 Leucine-rich repeat pr 93.9 0.022 4.7E-07 55.5 0.8 23 63-85 108-130 (1096)
57 KOG3763 mRNA export factor TAP 93.8 0.11 2.5E-06 48.9 5.3 44 57-100 211-254 (585)
58 KOG1259 Nischarin, modulator o 92.6 0.048 1E-06 48.1 0.8 58 88-152 282-342 (490)
59 smart00368 LRR_RI Leucine rich 92.3 0.23 5E-06 27.5 3.1 23 90-112 2-24 (28)
60 PRK15386 type III secretion pr 92.1 0.097 2.1E-06 48.2 2.3 32 65-100 73-104 (426)
61 PRK15370 E3 ubiquitin-protein 92.1 0.19 4.2E-06 49.9 4.5 99 64-175 325-426 (754)
62 KOG4579 Leucine-rich repeat (L 90.4 0.12 2.5E-06 40.7 0.9 106 66-176 29-135 (177)
63 KOG0472 Leucine-rich repeat pr 90.1 0.28 6.1E-06 45.0 3.2 38 137-176 503-540 (565)
64 KOG4579 Leucine-rich repeat (L 89.5 0.16 3.4E-06 40.0 0.9 94 81-178 15-114 (177)
65 KOG4237 Extracellular matrix p 89.1 0.3 6.5E-06 44.6 2.6 83 86-173 270-355 (498)
66 KOG4658 Apoptotic ATPase [Sign 88.7 0.31 6.8E-06 49.3 2.7 110 61-175 542-653 (889)
67 KOG0531 Protein phosphatase 1, 87.9 0.14 3E-06 47.2 -0.3 106 63-178 94-200 (414)
68 PRK15370 E3 ubiquitin-protein 87.9 0.87 1.9E-05 45.4 5.2 88 63-159 345-435 (754)
69 KOG3763 mRNA export factor TAP 87.6 1.4 3.1E-05 41.7 6.1 89 31-121 211-307 (585)
70 COG4886 Leucine-rich repeat (L 86.5 0.29 6.3E-06 44.4 0.9 39 137-178 253-291 (394)
71 COG4886 Leucine-rich repeat (L 83.3 0.53 1.1E-05 42.7 1.1 78 91-174 141-219 (394)
72 PF13504 LRR_7: Leucine rich r 83.1 1 2.3E-05 21.8 1.6 11 91-101 2-12 (17)
73 KOG0617 Ras suppressor protein 82.4 0.19 4E-06 41.1 -1.9 54 63-123 55-110 (264)
74 KOG3735 Tropomodulin and leiom 81.7 3.7 8E-05 36.7 5.6 85 80-164 188-280 (353)
75 KOG0531 Protein phosphatase 1, 81.5 0.46 1E-05 43.7 0.0 109 61-181 69-179 (414)
76 PF07723 LRR_2: Leucine Rich R 80.5 1.2 2.5E-05 24.3 1.4 25 140-164 1-26 (26)
77 PF00560 LRR_1: Leucine Rich R 77.9 1.2 2.5E-05 23.0 0.8 13 165-178 1-13 (22)
78 KOG0617 Ras suppressor protein 74.9 0.044 9.4E-07 44.7 -7.6 107 61-176 76-185 (264)
79 KOG1644 U2-associated snRNP A' 72.7 3.7 8.1E-05 34.3 2.9 85 90-178 42-127 (233)
80 KOG3735 Tropomodulin and leiom 70.1 13 0.00028 33.3 5.9 99 48-146 182-290 (353)
81 PRK15386 type III secretion pr 67.4 12 0.00027 34.7 5.4 89 62-173 50-141 (426)
82 KOG4237 Extracellular matrix p 67.3 5.3 0.00011 36.8 3.0 65 111-177 270-335 (498)
83 PF12937 F-box-like: F-box-lik 66.9 0.48 1E-05 29.3 -2.7 27 8-34 3-33 (47)
84 KOG0472 Leucine-rich repeat pr 54.5 3.6 7.9E-05 38.0 -0.3 43 134-178 247-289 (565)
85 smart00369 LRR_TYP Leucine-ric 51.1 12 0.00026 19.7 1.5 11 164-174 2-12 (26)
86 smart00370 LRR Leucine-rich re 51.1 12 0.00026 19.7 1.5 11 164-174 2-12 (26)
87 PF13306 LRR_5: Leucine rich r 46.8 2.4 5.2E-05 31.5 -2.4 98 61-173 9-112 (129)
88 smart00256 FBOX A Receptor for 46.4 6 0.00013 22.9 -0.2 24 11-34 7-30 (41)
89 PF03382 DUF285: Mycoplasma pr 45.3 11 0.00024 28.3 1.0 34 58-92 5-38 (120)
90 PF00646 F-box: F-box domain; 45.3 0.83 1.8E-05 28.1 -4.3 30 5-34 2-35 (48)
91 COG1509 KamA Lysine 2,3-aminom 35.7 1.8E+02 0.0039 26.5 7.3 40 106-146 149-195 (369)
92 smart00365 LRR_SD22 Leucine-ri 33.0 34 0.00074 18.5 1.5 14 139-152 2-15 (26)
93 smart00446 LRRcap occurring C- 25.6 52 0.0011 17.9 1.4 16 158-173 7-22 (26)
94 PF07735 FBA_2: F-box associat 22.2 2.3E+02 0.0051 18.4 6.6 16 65-80 12-27 (70)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.82 E-value=2.2e-21 Score=171.93 Aligned_cols=174 Identities=19% Similarity=0.292 Sum_probs=160.6
Q ss_pred CCCcC----CcceeeecCCCchHHHHHHHH--HHHhcCCCccEEE-ecCCCCCCHHHHHHHHhhCC-CCcEEEcCCCCCC
Q 025607 6 YIKIP----LEPYVYVHGHSDKQLTRILKI--SLSLSRGSIRTLI-FHFNLYVSDDQLTYTAERCP-QLKRLVMPAWNRI 77 (250)
Q Consensus 6 ~~~~p----l~if~~l~~~~~~~l~~v~~~--~~~~~~~~l~~L~-l~~~~~i~d~~L~~i~~~c~-~L~~L~L~~c~~i 77 (250)
-..+| +++|+|||..++++++++|+. ..+.+++.|++++ +.+...+...++..+..+|. .|+.|++.||..+
T Consensus 72 ~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v 151 (483)
T KOG4341|consen 72 SRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAV 151 (483)
T ss_pred cccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccccC
Confidence 34566 899999999999999999999 5778999999995 56677888889999999996 4999999999999
Q ss_pred CHHHHHHHHhcCCCCCEEEecCC-CCCHHHHHHHHHhCCCCceeEecCC--CCHHHHHHHHhcCCCccEEEe-ecCCCCH
Q 025607 78 KKTGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQNCRNFRELKIMGP--FDLLFASTLNMYLPKLKVLSL-RCTTLNR 153 (250)
Q Consensus 78 td~~l~~~~~~c~~L~~L~Ls~c-~~~d~~l~~i~~~c~~L~~L~L~~~--i~d~~~~~i~~~~~~L~~L~L-~~~~itd 153 (250)
.+..+..+..+||++++|++.+| ++||..+..+++.|++|++|++.+| +|+..+..+++.||+|++|++ +|..|++
T Consensus 152 ~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 152 GDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISG 231 (483)
T ss_pred CcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhc
Confidence 99999999999999999999999 9999999999999999999999998 899999999999999999999 8999999
Q ss_pred HHHHHHHhcCCCCcEEeeeCCCCcCC
Q 025607 154 DALILILDGLQNLEVLNISHCLLIDV 179 (250)
Q Consensus 154 ~~l~~i~~~c~~L~~Ldls~C~~i~~ 179 (250)
.|+..+.+||..|+.+-.+||....+
T Consensus 232 ~gv~~~~rG~~~l~~~~~kGC~e~~l 257 (483)
T KOG4341|consen 232 NGVQALQRGCKELEKLSLKGCLELEL 257 (483)
T ss_pred CcchHHhccchhhhhhhhcccccccH
Confidence 99999999999999999999988763
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.73 E-value=4e-19 Score=157.66 Aligned_cols=144 Identities=22% Similarity=0.289 Sum_probs=95.8
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCC-CCCHHHHHHHHHhC
Q 025607 36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQNC 114 (250)
Q Consensus 36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c-~~~d~~l~~i~~~c 114 (250)
.|++++.+.+.+++.+||+.+..+++.|++|+.|+|..|..+|+..+..++..||+|++|++++| .+++..++++.+.|
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~ 241 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC 241 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence 34555555555555555555555555555555555555555555555555555555555555555 55555555555555
Q ss_pred CCCceeEecCC--CCHHHHHHHHhcCCCccEEEe-ecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCC
Q 025607 115 RNFRELKIMGP--FDLLFASTLNMYLPKLKVLSL-RCTTLNRDALILILDGLQNLEVLNISHCLLIDV 179 (250)
Q Consensus 115 ~~L~~L~L~~~--i~d~~~~~i~~~~~~L~~L~L-~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~ 179 (250)
.+++.+.+.|| ..++.+..++.+++.+.++++ .|+.+||.++..+..+|..|+.|+.++|..+++
T Consensus 242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d 309 (483)
T KOG4341|consen 242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITD 309 (483)
T ss_pred hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCch
Confidence 55555555556 566677777777788888888 888888888888888888888888888888774
No 3
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.1e-16 Score=137.11 Aligned_cols=171 Identities=18% Similarity=0.163 Sum_probs=134.3
Q ss_pred CCCcC----CcceeeecCCCchHHHHHHHHH--HHhcCCCccEEEecCC-------------------------------
Q 025607 6 YIKIP----LEPYVYVHGHSDKQLTRILKIS--LSLSRGSIRTLIFHFN------------------------------- 48 (250)
Q Consensus 6 ~~~~p----l~if~~l~~~~~~~l~~v~~~~--~~~~~~~l~~L~l~~~------------------------------- 48 (250)
|-.+| +.||++|-..++.+++.||+.+ ++++.+.|+.+++.+.
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~~prla 177 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFMDQPRLA 177 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcchhhhcCchhh
Confidence 45677 8999999999999999999984 4466677777766421
Q ss_pred ------------------------------------------CCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHH
Q 025607 49 ------------------------------------------LYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAI 86 (250)
Q Consensus 49 ------------------------------------------~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~ 86 (250)
..++|.+...||+ ..+|+.|+|++|+.+|..++..++
T Consensus 178 e~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~ 256 (419)
T KOG2120|consen 178 EHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLL 256 (419)
T ss_pred hhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHH
Confidence 1233444444443 457888999999999999999999
Q ss_pred hcCCCCCEEEecCCCCCHHHHHH-HHHhCCCCceeEecCC---CCHHHHHHHHhcCCCccEEEe-ecCCCCHHHHHHHHh
Q 025607 87 RMWRDLESLTMPSIANPPYLMEE-IAQNCRNFRELKIMGP---FDLLFASTLNMYLPKLKVLSL-RCTTLNRDALILILD 161 (250)
Q Consensus 87 ~~c~~L~~L~Ls~c~~~d~~l~~-i~~~c~~L~~L~L~~~---i~d~~~~~i~~~~~~L~~L~L-~~~~itd~~l~~i~~ 161 (250)
.+|..|.+|+|++|..+.+.+.+ ++.--++|+.|+++|+ +.+..+..+++.||+|.+||| .++.+++ ++...+.
T Consensus 257 ~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~ 335 (419)
T KOG2120|consen 257 SSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFF 335 (419)
T ss_pred HhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hHHHHHH
Confidence 99999999999999554444444 4555689999999998 777888899999999999999 7888998 5555566
Q ss_pred cCCCCcEEeeeCCCCcC
Q 025607 162 GLQNLEVLNISHCLLID 178 (250)
Q Consensus 162 ~c~~L~~Ldls~C~~i~ 178 (250)
..+.|++|.++.|..+.
T Consensus 336 kf~~L~~lSlsRCY~i~ 352 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCYDII 352 (419)
T ss_pred hcchheeeehhhhcCCC
Confidence 78999999999998875
No 4
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.54 E-value=2.6e-14 Score=132.08 Aligned_cols=160 Identities=24% Similarity=0.371 Sum_probs=121.6
Q ss_pred CCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecC-C-CC--CHHHHHHHHHhCCCCceeEecC
Q 025607 49 LYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPS-I-AN--PPYLMEEIAQNCRNFRELKIMG 124 (250)
Q Consensus 49 ~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~-c-~~--~d~~l~~i~~~c~~L~~L~L~~ 124 (250)
..+++..+..+...+|+|+.|.+.+|..+++.++..++..|++|++|++++ + .. .......++..|++|++|+++.
T Consensus 173 ~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~ 252 (482)
T KOG1947|consen 173 SLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSG 252 (482)
T ss_pred ccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhh
Confidence 356677777888788999999999999999888888888999999999987 3 32 2333555788889999999988
Q ss_pred C--CCHHHHHHHHhcCCCccEEEe-ecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCCCCCCChhHHHhhhhHHHHHHHH
Q 025607 125 P--FDLLFASTLNMYLPKLKVLSL-RCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLDRTILQKAA 201 (250)
Q Consensus 125 ~--i~d~~~~~i~~~~~~L~~L~L-~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~~~~~~~~~~i~~~~~~i~~~~~ 201 (250)
+ ++|.++.+++..||+|+.|.+ .|..+|++|+.+++.+||.|++|++++|..+++. .+ ..+...++
T Consensus 253 ~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~----------~l-~~~~~~c~ 321 (482)
T KOG1947|consen 253 CGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDS----------GL-EALLKNCP 321 (482)
T ss_pred hhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHH----------HH-HHHHHhCc
Confidence 7 789999999988999999998 5666899999999999999999999999888642 23 33355566
Q ss_pred hhhhhhcccccccccccc
Q 025607 202 RLRKFLTCMEDSCIMCQR 219 (250)
Q Consensus 202 ~L~~l~~c~~~~c~~c~~ 219 (250)
++++|....-.+|....+
T Consensus 322 ~l~~l~~~~~~~c~~l~~ 339 (482)
T KOG1947|consen 322 NLRELKLLSLNGCPSLTD 339 (482)
T ss_pred chhhhhhhhcCCCccHHH
Confidence 677665443333443333
No 5
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.51 E-value=6e-14 Score=129.67 Aligned_cols=140 Identities=21% Similarity=0.270 Sum_probs=121.0
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCC-CCCCCHHH--HHHHHhcCCCCCEEEecCC-CCCHHHHHHHH
Q 025607 36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPA-WNRIKKTG--ICKAIRMWRDLESLTMPSI-ANPPYLMEEIA 111 (250)
Q Consensus 36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~-c~~itd~~--l~~~~~~c~~L~~L~Ls~c-~~~d~~l~~i~ 111 (250)
.++.++.+.+..+..+++..+..++..||+|+.|++++ |..++..+ .......|++|++|++++| .++|.++..++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 47888999888888999999999999999999999998 45555443 4457788999999999999 49999999999
Q ss_pred HhCCCCceeEecCC--CCHHHHHHHHhcCCCccEEEe-ecCCCCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607 112 QNCRNFRELKIMGP--FDLLFASTLNMYLPKLKVLSL-RCTTLNRDALILILDGLQNLEVLNISHCL 175 (250)
Q Consensus 112 ~~c~~L~~L~L~~~--i~d~~~~~i~~~~~~L~~L~L-~~~~itd~~l~~i~~~c~~L~~Ldls~C~ 175 (250)
..||+|++|.+.+| ++|+++.++++.||+|++|++ .|..++|.++..++.+||+|+.|.+..+.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~ 332 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN 332 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC
Confidence 99999999998888 799999999999999999999 78889999999999999988876655554
No 6
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=3e-13 Score=116.25 Aligned_cols=141 Identities=15% Similarity=0.218 Sum_probs=121.4
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCC--CCCHHHHHHHHHh
Q 025607 36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI--ANPPYLMEEIAQN 113 (250)
Q Consensus 36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c--~~~d~~l~~i~~~ 113 (250)
-..++++++++.+..++...+..+...|..|..|+|+.|...++.--..+..--++|..|+|+|| ++.+..+..+++.
T Consensus 232 kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~r 311 (419)
T KOG2120|consen 232 KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRR 311 (419)
T ss_pred ccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHh
Confidence 35688999999999999999999999999999999999987777633333344589999999999 7788899999999
Q ss_pred CCCCceeEecCC--CCHHHHHHHHhcCCCccEEEe-ecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607 114 CRNFRELKIMGP--FDLLFASTLNMYLPKLKVLSL-RCTTLNRDALILILDGLQNLEVLNISHCLLID 178 (250)
Q Consensus 114 c~~L~~L~L~~~--i~d~~~~~i~~~~~~L~~L~L-~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~ 178 (250)
||+|.+|+|+.+ +++..+.++. .++.|++|.+ +|..|..+.+.. +...|.|.+||+.||..-+
T Consensus 312 cp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~lSlsRCY~i~p~~~~~-l~s~psl~yLdv~g~vsdt 377 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQHLSLSRCYDIIPETLLE-LNSKPSLVYLDVFGCVSDT 377 (419)
T ss_pred CCceeeeccccccccCchHHHHHH-hcchheeeehhhhcCCChHHeee-eccCcceEEEEeccccCch
Confidence 999999999998 7887777776 7999999999 888888887765 4678999999999997643
No 7
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.34 E-value=4.9e-11 Score=104.84 Aligned_cols=136 Identities=24% Similarity=0.255 Sum_probs=94.1
Q ss_pred CCccEEEecCCCCCCHHHHHHHHh---hC-CCCcEEEcCCCCCCCHH---HHHHHHhcCCCCCEEEecCCCCCHHHHHHH
Q 025607 38 GSIRTLIFHFNLYVSDDQLTYTAE---RC-PQLKRLVMPAWNRIKKT---GICKAIRMWRDLESLTMPSIANPPYLMEEI 110 (250)
Q Consensus 38 ~~l~~L~l~~~~~i~d~~L~~i~~---~c-~~L~~L~L~~c~~itd~---~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i 110 (250)
++++.|+++.+. +++..+..+.. .+ ++|+.|++++|. ++.. .+...+..+++|++|++++|.+++..+..+
T Consensus 108 ~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 185 (319)
T cd00116 108 SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNGIGDAGIRAL 185 (319)
T ss_pred CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHH
Confidence 668888887654 56555554432 34 778888888774 5533 344455667788888888888777666665
Q ss_pred HHh---CCCCceeEecCC-CCHHHHHHHH---hcCCCccEEEeecCCCCHHHHHHHHhcC----CCCcEEeeeCCC
Q 025607 111 AQN---CRNFRELKIMGP-FDLLFASTLN---MYLPKLKVLSLRCTTLNRDALILILDGL----QNLEVLNISHCL 175 (250)
Q Consensus 111 ~~~---c~~L~~L~L~~~-i~d~~~~~i~---~~~~~L~~L~L~~~~itd~~l~~i~~~c----~~L~~Ldls~C~ 175 (250)
+.. +++|++|+++++ +++..+..++ ..+++|++|+++++.+++.++..+...+ ++|++|++++|.
T Consensus 186 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 186 AEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 543 358888888877 7666555443 3567888888877888888887777664 688888888884
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.28 E-value=8.6e-11 Score=103.27 Aligned_cols=137 Identities=19% Similarity=0.160 Sum_probs=98.1
Q ss_pred CCCccEEEecCCCCC--CHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHH---HHhcC-CCCCEEEecCCCCCHHHHHHH
Q 025607 37 RGSIRTLIFHFNLYV--SDDQLTYTAERCPQLKRLVMPAWNRIKKTGICK---AIRMW-RDLESLTMPSIANPPYLMEEI 110 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i--~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~---~~~~c-~~L~~L~Ls~c~~~d~~l~~i 110 (250)
.++++.+.++++... ....+..+... ++|++|++++| .+++.++.. .+..+ ++|++|++++|.++...+..+
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 678888888876543 23344444444 67999999876 577655544 34556 888999999998875544443
Q ss_pred ---HHhCCCCceeEecCC-CCHHHHHHHHhc---CCCccEEEeecCCCCHHHHHHH---HhcCCCCcEEeeeCCC
Q 025607 111 ---AQNCRNFRELKIMGP-FDLLFASTLNMY---LPKLKVLSLRCTTLNRDALILI---LDGLQNLEVLNISHCL 175 (250)
Q Consensus 111 ---~~~c~~L~~L~L~~~-i~d~~~~~i~~~---~~~L~~L~L~~~~itd~~l~~i---~~~c~~L~~Ldls~C~ 175 (250)
...+++|++|+++++ +++.++..+++. +++|++|+++++.+++.++..+ +..+|+|++|++++|.
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 345678999999888 887776666543 4599999998888888876655 3457889999999985
No 9
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.82 E-value=1.9e-08 Score=97.70 Aligned_cols=166 Identities=19% Similarity=0.201 Sum_probs=119.9
Q ss_pred HHHHHHH-HHHhcCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCC
Q 025607 25 LTRILKI-SLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANP 103 (250)
Q Consensus 25 l~~v~~~-~~~~~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~ 103 (250)
++.+.+. .-+.+..+|+.|++++...++..-...++..+|+|++|.+++= .+..+.|..+..++|+|.+||+|+++++
T Consensus 108 i~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~ 186 (699)
T KOG3665|consen 108 IISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNIS 186 (699)
T ss_pred HHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCCcc
Confidence 4445555 4456788999999999989999999999999999999999864 4444558889999999999999999887
Q ss_pred HHHHHHHHHhCCCCceeEecCC-CC-HHHHHHHHhcCCCccEEEeecCCCCHHH--HHHHH---hcCCCCcEEeeeCCCC
Q 025607 104 PYLMEEIAQNCRNFRELKIMGP-FD-LLFASTLNMYLPKLKVLSLRCTTLNRDA--LILIL---DGLQNLEVLNISHCLL 176 (250)
Q Consensus 104 d~~l~~i~~~c~~L~~L~L~~~-i~-d~~~~~i~~~~~~L~~L~L~~~~itd~~--l~~i~---~~c~~L~~Ldls~C~~ 176 (250)
+- ..|+ +.+||+.|.+..- +. ...+..+. .+.+|+.||++...-.+.. +...+ ..+|+|+.||.|+-
T Consensus 187 nl--~GIS-~LknLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT-- 260 (699)
T KOG3665|consen 187 NL--SGIS-RLKNLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT-- 260 (699)
T ss_pred Cc--HHHh-ccccHHHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc--
Confidence 54 3333 4688998888665 43 35666676 7899999999554433322 33322 23799999999842
Q ss_pred cCCCCCCChhHHHhhhhHHHHHHHHhhhhhh
Q 025607 177 IDVPLAPAPKKIIKKLDRTILQKAARLRKFL 207 (250)
Q Consensus 177 i~~~~~~~~~~~i~~~~~~i~~~~~~L~~l~ 207 (250)
+.. .++.+.+++.-++|+.+.
T Consensus 261 --di~--------~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 261 --DIN--------EEILEELLNSHPNLQQIA 281 (699)
T ss_pred --chh--------HHHHHHHHHhCccHhhhh
Confidence 211 455566666666777754
No 10
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.71 E-value=1e-07 Score=83.78 Aligned_cols=140 Identities=22% Similarity=0.239 Sum_probs=88.5
Q ss_pred cCCCccEEEecCCCCCC--HHHHHHHHhhCCCCcEEEcCCCCCCCHHHH---HHHHhcCCCCCEEEecCCCCCHHHHHHH
Q 025607 36 SRGSIRTLIFHFNLYVS--DDQLTYTAERCPQLKRLVMPAWNRIKKTGI---CKAIRMWRDLESLTMPSIANPPYLMEEI 110 (250)
Q Consensus 36 ~~~~l~~L~l~~~~~i~--d~~L~~i~~~c~~L~~L~L~~c~~itd~~l---~~~~~~c~~L~~L~Ls~c~~~d~~l~~i 110 (250)
+.+.++.+....++.-+ -..+..+.+.+|.|+.+.++.. .|..+|+ ...+.+||+|+.|||..|.++..+=.++
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 45566666554433222 2234444556778888877743 4544443 3346678888888888776666555555
Q ss_pred HH---hCCCCceeEecCC-CCHHHHHHHH----hcCCCccEEEeecCCCCHHHHHHHHhc---CCCCcEEeeeCCCC
Q 025607 111 AQ---NCRNFRELKIMGP-FDLLFASTLN----MYLPKLKVLSLRCTTLNRDALILILDG---LQNLEVLNISHCLL 176 (250)
Q Consensus 111 ~~---~c~~L~~L~L~~~-i~d~~~~~i~----~~~~~L~~L~L~~~~itd~~l~~i~~~---c~~L~~Ldls~C~~ 176 (250)
++ ..|+|++|+++.| +.+.++.+++ +..|+|+.|.+.+|.||.++...+... -|.|+.|+|++|..
T Consensus 234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 53 3467778888887 6665555544 356788888887788887776555432 47788888888875
No 11
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=5.5e-09 Score=94.11 Aligned_cols=138 Identities=18% Similarity=0.172 Sum_probs=94.6
Q ss_pred CccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCc
Q 025607 39 SIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFR 118 (250)
Q Consensus 39 ~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~ 118 (250)
.|+.+.+.. ..+.+......++.||+++.|+|++.---....+.+++..+|+|+.|+|+.+.+....=.......++|+
T Consensus 122 kL~~IsLdn-~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 122 KLREISLDN-YRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred hhhheeecC-ccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 455666653 3455544446677899999999997655577888999999999999999998432111111112568899
Q ss_pred eeEecCC-CCHHHHHHHHhcCCCccEEEeecC-CCCHHHHHHHHhcCCCCcEEeeeCCCCcCC
Q 025607 119 ELKIMGP-FDLLFASTLNMYLPKLKVLSLRCT-TLNRDALILILDGLQNLEVLNISHCLLIDV 179 (250)
Q Consensus 119 ~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~-~itd~~l~~i~~~c~~L~~Ldls~C~~i~~ 179 (250)
.|.+++| ++.+.+..++..+|+|+.|.|..| .+.-..... +-...|+.|||++...++.
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~~ 261 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLIDF 261 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCccccc
Confidence 9999999 999999999999999999999555 332222111 1234567777777666654
No 12
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.65 E-value=1.8e-07 Score=82.28 Aligned_cols=142 Identities=18% Similarity=0.185 Sum_probs=67.1
Q ss_pred CCCccEEEecCCCCC--CHHHHHHHHhhCCCCcEEEcCCCCCCCHHH------------HHHHHhcCCCCCEEEecCCCC
Q 025607 37 RGSIRTLIFHFNLYV--SDDQLTYTAERCPQLKRLVMPAWNRIKKTG------------ICKAIRMWRDLESLTMPSIAN 102 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i--~d~~L~~i~~~c~~L~~L~L~~c~~itd~~------------l~~~~~~c~~L~~L~Ls~c~~ 102 (250)
++.++.|+|+.+.+= ..+.|..+..+|.+|+.|.|.+| .+...+ ....+..-+.|+.+...+|.+
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 336666666554321 12334444445666666666655 222211 001112223444444444422
Q ss_pred CHH---HHHHHHHhCCCCceeEecCC-CCHHHHHHHH---hcCCCccEEEeecCCCCHHHHHHHH---hcCCCCcEEeee
Q 025607 103 PPY---LMEEIAQNCRNFRELKIMGP-FDLLFASTLN---MYLPKLKVLSLRCTTLNRDALILIL---DGLQNLEVLNIS 172 (250)
Q Consensus 103 ~d~---~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~---~~~~~L~~L~L~~~~itd~~l~~i~---~~c~~L~~Ldls 172 (250)
.+. .+....+.+|.|+++++... +..+++.+++ .+||+|+.|+|+.|..|.+|=.+++ ...|+|+.|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 222 22222344555555555544 3333332222 3566777777766666666644443 334666667777
Q ss_pred CCCCcCC
Q 025607 173 HCLLIDV 179 (250)
Q Consensus 173 ~C~~i~~ 179 (250)
.|-.-+.
T Consensus 250 dcll~~~ 256 (382)
T KOG1909|consen 250 DCLLENE 256 (382)
T ss_pred ccccccc
Confidence 7755443
No 13
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=2.7e-07 Score=83.39 Aligned_cols=126 Identities=19% Similarity=0.225 Sum_probs=98.8
Q ss_pred CCCCHHHHHHHHhhC---CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCC-CHHHHHHHHHhCCCCceeEecC
Q 025607 49 LYVSDDQLTYTAERC---PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIAN-PPYLMEEIAQNCRNFRELKIMG 124 (250)
Q Consensus 49 ~~i~d~~L~~i~~~c---~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~-~d~~l~~i~~~c~~L~~L~L~~ 124 (250)
+.+.--++..|+++- .+|+.+.|..| .+.+.+....++.||+++.||||++-+ .=..+..|+...|+|+.|+++.
T Consensus 103 K~vE~iGfDki~akQsn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~ 181 (505)
T KOG3207|consen 103 KQVEFIGFDKIAAKQSNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS 181 (505)
T ss_pred ceeEEecHHHHHHHhhhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccc
Confidence 344444556666654 45777888876 677777667889999999999999944 4467888999999999999987
Q ss_pred C----CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607 125 P----FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 178 (250)
Q Consensus 125 ~----i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~ 178 (250)
. .++.... ..++.|+.|.|+.|.++...+..++..+|+|+.|.+.+...+.
T Consensus 182 Nrl~~~~~s~~~---~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~ 236 (505)
T KOG3207|consen 182 NRLSNFISSNTT---LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL 236 (505)
T ss_pred ccccCCccccch---hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc
Confidence 6 2222221 1678999999999999999999999999999999999986443
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.32 E-value=8.7e-08 Score=77.93 Aligned_cols=111 Identities=22% Similarity=0.237 Sum_probs=37.9
Q ss_pred HHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCH-HHHHHHH
Q 025607 58 YTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDL-LFASTLN 135 (250)
Q Consensus 58 ~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d-~~~~~i~ 135 (250)
.++..+.+|+.|+|+++.--+-++ +..++.|+.|++++|.+++-. ..+.+.+|+|++|.+++. +.+ ..+..++
T Consensus 36 ~L~~~l~~L~~L~Ls~N~I~~l~~----l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~ 110 (175)
T PF14580_consen 36 NLGATLDKLEVLDLSNNQITKLEG----LPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKISDLNELEPLS 110 (175)
T ss_dssp S--TT-TT--EEE-TTS--S--TT--------TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---SCCCCGGGG
T ss_pred chhhhhcCCCEEECCCCCCccccC----ccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCCChHHhHHHH
Confidence 333344566666666542222122 334566666666666554311 123345666666666655 322 2233333
Q ss_pred hcCCCccEEEeecCCCCHHH--HHHHHhcCCCCcEEeeeCC
Q 025607 136 MYLPKLKVLSLRCTTLNRDA--LILILDGLQNLEVLNISHC 174 (250)
Q Consensus 136 ~~~~~L~~L~L~~~~itd~~--l~~i~~~c~~L~~Ldls~C 174 (250)
.+|+|+.|++.+|.+++.. -..++..+|+|+.||-...
T Consensus 111 -~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 111 -SLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -G-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred -cCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 5666666666555555332 2234455666666655443
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.28 E-value=1.6e-07 Score=76.42 Aligned_cols=141 Identities=17% Similarity=0.191 Sum_probs=54.4
Q ss_pred CHHHHHHHHh--hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCH
Q 025607 52 SDDQLTYTAE--RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDL 128 (250)
Q Consensus 52 ~d~~L~~i~~--~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d 128 (250)
|-+.++.++. .+-+++.|+|.++ .|+. +..+...+.+|+.|++++|.++. +..+. .+++|++|++++. +++
T Consensus 5 t~~~i~~~~~~~n~~~~~~L~L~~n-~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~--l~~l~-~L~~L~~L~L~~N~I~~ 78 (175)
T PF14580_consen 5 TANMIEQIAQYNNPVKLRELNLRGN-QIST--IENLGATLDKLEVLDLSNNQITK--LEGLP-GLPRLKTLDLSNNRISS 78 (175)
T ss_dssp ----------------------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS---S
T ss_pred ccccccccccccccccccccccccc-cccc--ccchhhhhcCCCEEECCCCCCcc--ccCcc-ChhhhhhcccCCCCCCc
Confidence 3444444443 3456899999976 4443 33333467899999999997653 22332 3699999999988 554
Q ss_pred HHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCCCCCCChhHHHhhhhHHHHHHHHhhhhhhc
Q 025607 129 LFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLDRTILQKAARLRKFLT 208 (250)
Q Consensus 129 ~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~~~~~~~~~~i~~~~~~i~~~~~~L~~l~~ 208 (250)
-. ..+.+.+|+|++|.++.|+|.+-+-..-+..+|+|+.|++.+++--.. ..+-..++...++|+.+..
T Consensus 79 i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~----------~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 79 IS-EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK----------KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -C-HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS----------TTHHHHHHHH-TT-SEETT
T ss_pred cc-cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch----------hhHHHHHHHHcChhheeCC
Confidence 21 134457899999999999987743333456799999999999986543 2355667888888888765
Q ss_pred c
Q 025607 209 C 209 (250)
Q Consensus 209 c 209 (250)
.
T Consensus 148 ~ 148 (175)
T PF14580_consen 148 Q 148 (175)
T ss_dssp E
T ss_pred E
Confidence 4
No 16
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.16 E-value=2.1e-06 Score=86.74 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=18.6
Q ss_pred cCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607 137 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 175 (250)
Q Consensus 137 ~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~ 175 (250)
.+++|+.|+++.+.++.... .-+.++++|++|++++|.
T Consensus 210 ~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 210 QMKSLKWIYLGYNNLSGEIP-YEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred CcCCccEEECcCCccCCcCC-hhHhcCCCCCEEECcCce
Confidence 34555555554444443211 123455666666666664
No 17
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.12 E-value=3.6e-06 Score=81.99 Aligned_cols=112 Identities=25% Similarity=0.220 Sum_probs=53.9
Q ss_pred CCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccE
Q 025607 65 QLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKV 143 (250)
Q Consensus 65 ~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~ 143 (250)
+|++|+++|-..++..-..++...+|.|++|.+++-.+..+-+..+.++.|||..|+++++ +++- ..|+ ++++|+.
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS-~LknLq~ 199 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGIS-RLKNLQV 199 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHh-ccccHHH
Confidence 3444444443333333334444444555555544443333334444444455555555444 3321 2222 4444444
Q ss_pred EEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCC
Q 025607 144 LSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV 179 (250)
Q Consensus 144 L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~ 179 (250)
|.+.+-.+....-..-+.+.++|+.||+|.-.+.+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~ 235 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDD 235 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccc
Confidence 444443333322112245689999999998877664
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.08 E-value=2e-06 Score=83.94 Aligned_cols=119 Identities=24% Similarity=0.280 Sum_probs=86.4
Q ss_pred CCCCHHHHHHHHhhCCCCcEEEcCCC--CCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-
Q 025607 49 LYVSDDQLTYTAERCPQLKRLVMPAW--NRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP- 125 (250)
Q Consensus 49 ~~i~d~~L~~i~~~c~~L~~L~L~~c--~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~- 125 (250)
.+++|..+..+. ..++||.|+|++- ..+.+. .+.+++.||+|+|||+.++.-. ..++ .|+.|++|...+.
T Consensus 369 N~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas----~~~kle~LeeL~LSGNkL~~Lp-~tva-~~~~L~tL~ahsN~ 441 (1081)
T KOG0618|consen 369 NHLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPAS----KLRKLEELEELNLSGNKLTTLP-DTVA-NLGRLHTLRAHSNQ 441 (1081)
T ss_pred Ccccccchhhhc-cccceeeeeecccccccCCHH----HHhchHHhHHHhcccchhhhhh-HHHH-hhhhhHHHhhcCCc
Confidence 457777776664 5788999999864 234443 3567899999999999665333 3333 4788999988765
Q ss_pred CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607 126 FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 178 (250)
Q Consensus 126 i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~ 178 (250)
+.- +..++ ..|+|+.+|++||.++.-.+...... |+|++||++|.....
T Consensus 442 l~~--fPe~~-~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 442 LLS--FPELA-QLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLV 490 (1081)
T ss_pred eee--chhhh-hcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccc
Confidence 221 11344 68999999999999998777765544 899999999998643
No 19
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.05 E-value=4.4e-06 Score=84.52 Aligned_cols=86 Identities=17% Similarity=0.108 Sum_probs=35.5
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCC
Q 025607 62 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK 140 (250)
Q Consensus 62 ~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~ 140 (250)
.+++|+.|+|+++. ++. .+...+.++++|+.|++++|.++......++ .+++|+.|+++++ ++......+. .+++
T Consensus 162 ~l~~L~~L~L~~n~-l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~-~l~~ 237 (968)
T PLN00113 162 SFSSLKVLDLGGNV-LVG-KIPNSLTNLTSLEFLTLASNQLVGQIPRELG-QMKSLKWIYLGYNNLSGEIPYEIG-GLTS 237 (968)
T ss_pred cCCCCCEEECccCc-ccc-cCChhhhhCcCCCeeeccCCCCcCcCChHHc-CcCCccEEECcCCccCCcCChhHh-cCCC
Confidence 35566666665542 111 0111234455555555555543322222222 2345555555444 2222222222 3444
Q ss_pred ccEEEeecCCC
Q 025607 141 LKVLSLRCTTL 151 (250)
Q Consensus 141 L~~L~L~~~~i 151 (250)
|++|++.++.+
T Consensus 238 L~~L~L~~n~l 248 (968)
T PLN00113 238 LNHLDLVYNNL 248 (968)
T ss_pred CCEEECcCcee
Confidence 55555544433
No 20
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=1.3e-05 Score=66.04 Aligned_cols=85 Identities=21% Similarity=0.303 Sum_probs=67.4
Q ss_pred CCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC--CCHHHHHHHHhcCCCccEEEe-ecCCCCHHHHHHHHhcCCCCcE
Q 025607 92 LESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP--FDLLFASTLNMYLPKLKVLSL-RCTTLNRDALILILDGLQNLEV 168 (250)
Q Consensus 92 L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~--i~d~~~~~i~~~~~~L~~L~L-~~~~itd~~l~~i~~~c~~L~~ 168 (250)
++.++-+++.+..++++.+.. ++.++.|.+..| ++|.++..|+.-.|+|+.|+| .|..||+.|+..+. ..++|+.
T Consensus 103 IeaVDAsds~I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr~ 180 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLRR 180 (221)
T ss_pred EEEEecCCchHHHHHHHHHhc-cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhHH
Confidence 577777777788888877754 688888888888 888888888887889999999 58889999988764 5788888
Q ss_pred EeeeCCCCcC
Q 025607 169 LNISHCLLID 178 (250)
Q Consensus 169 Ldls~C~~i~ 178 (250)
|.+.+=..+.
T Consensus 181 L~l~~l~~v~ 190 (221)
T KOG3864|consen 181 LHLYDLPYVA 190 (221)
T ss_pred HHhcCchhhh
Confidence 8877655544
No 21
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=2.7e-05 Score=64.08 Aligned_cols=79 Identities=18% Similarity=0.204 Sum_probs=63.8
Q ss_pred CcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCC-CCCHHHHHHHHHhCCCCceeEecCC--CCHHHHHHHHhcCCCcc
Q 025607 66 LKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQNCRNFRELKIMGP--FDLLFASTLNMYLPKLK 142 (250)
Q Consensus 66 L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c-~~~d~~l~~i~~~c~~L~~L~L~~~--i~d~~~~~i~~~~~~L~ 142 (250)
++.++-+++ .|..+|+.. +..++.++.|.+..| .+.|..++.++.-.|+|+.|++++| ||+.++..+. .+++|+
T Consensus 103 IeaVDAsds-~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr 179 (221)
T KOG3864|consen 103 IEAVDASDS-SIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLR 179 (221)
T ss_pred EEEEecCCc-hHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhH
Confidence 555666654 677778766 578888888888888 7888889888888889999999888 8888888887 688888
Q ss_pred EEEee
Q 025607 143 VLSLR 147 (250)
Q Consensus 143 ~L~L~ 147 (250)
.|.|.
T Consensus 180 ~L~l~ 184 (221)
T KOG3864|consen 180 RLHLY 184 (221)
T ss_pred HHHhc
Confidence 88883
No 22
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.66 E-value=4.3e-05 Score=78.92 Aligned_cols=106 Identities=19% Similarity=0.304 Sum_probs=59.2
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCC-CCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCC
Q 025607 62 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLP 139 (250)
Q Consensus 62 ~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c-~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~ 139 (250)
.+++|+.|++++|..++. +...+ .+++|+.|++++| .+. .+....++|++|++++. ++. ....+ ..++
T Consensus 800 ~L~~L~~L~Ls~C~~L~~--LP~~~-~L~sL~~L~Ls~c~~L~-----~~p~~~~nL~~L~Ls~n~i~~-iP~si-~~l~ 869 (1153)
T PLN03210 800 NLHKLEHLEIENCINLET--LPTGI-NLESLESLDLSGCSRLR-----TFPDISTNISDLNLSRTGIEE-VPWWI-EKFS 869 (1153)
T ss_pred CCCCCCEEECCCCCCcCe--eCCCC-CccccCEEECCCCCccc-----cccccccccCEeECCCCCCcc-ChHHH-hcCC
Confidence 456666666666654432 11111 3566666666666 221 11122356777777665 331 11122 2677
Q ss_pred CccEEEe-ecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCC
Q 025607 140 KLKVLSL-RCTTLNRDALILILDGLQNLEVLNISHCLLIDV 179 (250)
Q Consensus 140 ~L~~L~L-~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~ 179 (250)
+|+.|++ .|+.++. +..-...++.|+.|++++|..++.
T Consensus 870 ~L~~L~L~~C~~L~~--l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 870 NLSFLDMNGCNNLQR--VSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred CCCEEECCCCCCcCc--cCcccccccCCCeeecCCCccccc
Confidence 8888888 6666664 333345678888888888887763
No 23
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.59 E-value=0.0014 Score=56.64 Aligned_cols=65 Identities=26% Similarity=0.354 Sum_probs=43.3
Q ss_pred CCCceeEecCC-CCHHHHHHHH----hcCCCccEEEeecCCCCHHHHHHHHh---cCCCCcEEeeeCCCCcCC
Q 025607 115 RNFRELKIMGP-FDLLFASTLN----MYLPKLKVLSLRCTTLNRDALILILD---GLQNLEVLNISHCLLIDV 179 (250)
Q Consensus 115 ~~L~~L~L~~~-i~d~~~~~i~----~~~~~L~~L~L~~~~itd~~l~~i~~---~c~~L~~Ldls~C~~i~~ 179 (250)
.+|+++++... +-.+++..++ .++++|+.|+|..|..|-.|-..++. ..|.|+.|.+..|..-+.
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~ 257 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNE 257 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccc
Confidence 46666666555 5555544443 36788888888878888777555543 357788888888876554
No 24
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.55 E-value=9.1e-05 Score=40.68 Aligned_cols=24 Identities=25% Similarity=0.564 Sum_probs=17.3
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHH
Q 025607 63 CPQLKRLVMPAWNRIKKTGICKAI 86 (250)
Q Consensus 63 c~~L~~L~L~~c~~itd~~l~~~~ 86 (250)
||+|+.|+|++|..+||.++..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 567777777777777777776654
No 25
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.50 E-value=5.6e-05 Score=71.11 Aligned_cols=86 Identities=22% Similarity=0.279 Sum_probs=55.5
Q ss_pred CCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-----CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCC
Q 025607 90 RDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-----FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQ 164 (250)
Q Consensus 90 ~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-----i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~ 164 (250)
.+|++|+|+.+.++. .-+..-...++|++|+|.+. +.| +..+.. .+|.|++|+|.+|++-.-.=.+ ..+.+
T Consensus 341 ~~Le~LnLs~Nsi~~-l~e~af~~lssL~~LdLr~N~ls~~IED-aa~~f~-gl~~LrkL~l~gNqlk~I~krA-fsgl~ 416 (873)
T KOG4194|consen 341 SQLEELNLSHNSIDH-LAEGAFVGLSSLHKLDLRSNELSWCIED-AAVAFN-GLPSLRKLRLTGNQLKSIPKRA-FSGLE 416 (873)
T ss_pred HHhhhhcccccchHH-HHhhHHHHhhhhhhhcCcCCeEEEEEec-chhhhc-cchhhhheeecCceeeecchhh-hccCc
Confidence 555555555553321 11111234578999998765 455 333444 6999999999888765543333 46899
Q ss_pred CCcEEeeeCCCCcCC
Q 025607 165 NLEVLNISHCLLIDV 179 (250)
Q Consensus 165 ~L~~Ldls~C~~i~~ 179 (250)
.||+||+.+....+.
T Consensus 417 ~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 417 ALEHLDLGDNAIASI 431 (873)
T ss_pred ccceecCCCCcceee
Confidence 999999999876553
No 26
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.43 E-value=0.0022 Score=55.46 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=33.0
Q ss_pred cCCCccEEEeecCCCCHHHHHHHH----hcCCCCcEEeeeCCCC
Q 025607 137 YLPKLKVLSLRCTTLNRDALILIL----DGLQNLEVLNISHCLL 176 (250)
Q Consensus 137 ~~~~L~~L~L~~~~itd~~l~~i~----~~c~~L~~Ldls~C~~ 176 (250)
.-.+|+.+.+..|.|..+|+.+++ ..|.+|+.||++....
T Consensus 183 sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 183 SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccch
Confidence 336888999988999999988774 5589999999998763
No 27
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.42 E-value=0.00012 Score=75.59 Aligned_cols=108 Identities=20% Similarity=0.285 Sum_probs=72.8
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCC-CCCHHHHHHHHHhCCCCceeEecCCCCHHHHHHHHhcCCCc
Q 025607 63 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKL 141 (250)
Q Consensus 63 c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c-~~~d~~l~~i~~~c~~L~~L~L~~~i~d~~~~~i~~~~~~L 141 (250)
+++|+.|+|++|..+.. +...+.++++|+.|+|++| .++. ....+ .+++|+.|++++|-.-. .+....++|
T Consensus 777 ~~sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~Ls~C~~L~~-LP~~~--~L~sL~~L~Ls~c~~L~---~~p~~~~nL 848 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCINLET-LPTGI--NLESLESLDLSGCSRLR---TFPDISTNI 848 (1153)
T ss_pred cccchheeCCCCCCccc--cChhhhCCCCCCEEECCCCCCcCe-eCCCC--CccccCEEECCCCCccc---ccccccccc
Confidence 46788888877754432 3334678889999999888 3331 11111 46889999998882111 122234689
Q ss_pred cEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCCC
Q 025607 142 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVP 180 (250)
Q Consensus 142 ~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~~ 180 (250)
+.|+|.++.++. +..-+..+++|+.|++++|.+++..
T Consensus 849 ~~L~Ls~n~i~~--iP~si~~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 849 SDLNLSRTGIEE--VPWWIEKFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred CEeECCCCCCcc--ChHHHhcCCCCCEEECCCCCCcCcc
Confidence 999998888874 3334567999999999999998753
No 28
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.24 E-value=0.00032 Score=38.49 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=17.0
Q ss_pred CCCCCEEEecCC-CCCHHHHHHHHH
Q 025607 89 WRDLESLTMPSI-ANPPYLMEEIAQ 112 (250)
Q Consensus 89 c~~L~~L~Ls~c-~~~d~~l~~i~~ 112 (250)
||+|++|+|++| .+||.++.++++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 567777777777 677777777664
No 29
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.00021 Score=62.42 Aligned_cols=108 Identities=19% Similarity=0.151 Sum_probs=70.3
Q ss_pred CcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHH-HHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccE
Q 025607 66 LKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPY-LMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKV 143 (250)
Q Consensus 66 L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~-~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~ 143 (250)
+.-|.+.+|..-+...+..+...|..+++|||.++.++|- -+.+|..+.|.|+.|+++.. ++.. +..+..-..+|+.
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRV 125 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEE
Confidence 3345556664334445566677777888888888777663 35566777788888888766 3221 1112113447788
Q ss_pred EEeecCCCCHHHHHHHHhcCCCCcEEeeeCC
Q 025607 144 LSLRCTTLNRDALILILDGLQNLEVLNISHC 174 (250)
Q Consensus 144 L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C 174 (250)
|-|++..++...+...+...|.++.|++|..
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 8778888888777777777888888877766
No 30
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.00021 Score=61.83 Aligned_cols=98 Identities=22% Similarity=0.256 Sum_probs=58.2
Q ss_pred CCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCH-HHHHHHHhcCCCcc
Q 025607 65 QLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDL-LFASTLNMYLPKLK 142 (250)
Q Consensus 65 ~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d-~~~~~i~~~~~~L~ 142 (250)
+.+.|+..|| .++|-.+ ..+.|.||.|.||-|.|+ ++..+ ..|++|++|.|..+ +.+ +.+..+ +++|+|+
T Consensus 20 ~vkKLNcwg~-~L~DIsi---c~kMp~lEVLsLSvNkIs--sL~pl-~rCtrLkElYLRkN~I~sldEL~YL-knlpsLr 91 (388)
T KOG2123|consen 20 NVKKLNCWGC-GLDDISI---CEKMPLLEVLSLSVNKIS--SLAPL-QRCTRLKELYLRKNCIESLDELEYL-KNLPSLR 91 (388)
T ss_pred HhhhhcccCC-CccHHHH---HHhcccceeEEeeccccc--cchhH-HHHHHHHHHHHHhcccccHHHHHHH-hcCchhh
Confidence 5677777777 5666543 446677888777776554 22222 35777888777554 554 334333 4777787
Q ss_pred EEEe---ecCCCCHHHHH-HHHhcCCCCcEEe
Q 025607 143 VLSL---RCTTLNRDALI-LILDGLQNLEVLN 170 (250)
Q Consensus 143 ~L~L---~~~~itd~~l~-~i~~~c~~L~~Ld 170 (250)
.|.| -|+.-...-.+ .+++-.|+|+.||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7777 23332222233 3455677777774
No 31
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.00023 Score=62.17 Aligned_cols=157 Identities=12% Similarity=0.140 Sum_probs=102.7
Q ss_pred ccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCce
Q 025607 40 IRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRE 119 (250)
Q Consensus 40 l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~ 119 (250)
+.-+.++++.-=+......++..|..++.++|.+...-.++.+..++.+.|.|+.|+|+.+.+... +..+..--.||++
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRV 125 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEE
Confidence 334455555444556777889999999999998653335578888999999999999998855432 1222223479999
Q ss_pred eEecCC-CCHHHHHHHHhcCCCccEEEeecC-----CCCHHHHHHHHhcCCCCcEEeeeCCCCcCCCCCCChhHHHhhhh
Q 025607 120 LKIMGP-FDLLFASTLNMYLPKLKVLSLRCT-----TLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLD 193 (250)
Q Consensus 120 L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~-----~itd~~l~~i~~~c~~L~~Ldls~C~~i~~~~~~~~~~~i~~~~ 193 (250)
|-|+|. ++-.......+..|+++.|.++-| .+.|+..+. --|.++.|...+|.-.. +.+ .
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~---~s~~v~tlh~~~c~~~~----------w~~-~ 191 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED---WSTEVLTLHQLPCLEQL----------WLN-K 191 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccc---cchhhhhhhcCCcHHHH----------HHH-H
Confidence 999998 777777788888999999988544 234433332 23566677777775321 111 1
Q ss_pred HHHHHHHHhhhhhhcccc
Q 025607 194 RTILQKAARLRKFLTCME 211 (250)
Q Consensus 194 ~~i~~~~~~L~~l~~c~~ 211 (250)
..+....+++..++.|++
T Consensus 192 ~~l~r~Fpnv~sv~v~e~ 209 (418)
T KOG2982|consen 192 NKLSRIFPNVNSVFVCEG 209 (418)
T ss_pred HhHHhhcccchheeeecC
Confidence 223344556666666754
No 32
>PLN03150 hypothetical protein; Provisional
Probab=97.04 E-value=0.00073 Score=65.55 Aligned_cols=108 Identities=15% Similarity=0.162 Sum_probs=70.5
Q ss_pred CcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEE
Q 025607 66 LKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVL 144 (250)
Q Consensus 66 L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L 144 (250)
++.|+|+++ .++. .+...+.++++|+.|+|++|.++......+ ..+++|+.|+|+++ ++...-..+. .+++|+.|
T Consensus 420 v~~L~L~~n-~L~g-~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N~lsg~iP~~l~-~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQ-GLRG-FIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGSIPESLG-QLTSLRIL 495 (623)
T ss_pred EEEEECCCC-Cccc-cCCHHHhCCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCCCCCCCCchHHh-cCCCCCEE
Confidence 677888765 3321 223346678999999999987765444444 45789999999887 5543333444 78899999
Q ss_pred EeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607 145 SLRCTTLNRDALILILDGLQNLEVLNISHCLLI 177 (250)
Q Consensus 145 ~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i 177 (250)
+|++|.++..--..+.....++..+++.++..+
T Consensus 496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred ECcCCcccccCChHHhhccccCceEEecCCccc
Confidence 998887775433333333456677777765543
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.82 E-value=5.9e-05 Score=50.13 Aligned_cols=11 Identities=45% Similarity=0.706 Sum_probs=4.2
Q ss_pred CCCCcEEeeeC
Q 025607 163 LQNLEVLNISH 173 (250)
Q Consensus 163 c~~L~~Ldls~ 173 (250)
+|+|++|++++
T Consensus 48 l~~L~~L~l~~ 58 (61)
T PF13855_consen 48 LPNLRYLDLSN 58 (61)
T ss_dssp STTESEEEETS
T ss_pred CCCCCEEeCcC
Confidence 33333333333
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.72 E-value=6.2e-05 Score=50.03 Aligned_cols=60 Identities=22% Similarity=0.249 Sum_probs=40.9
Q ss_pred CCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCC
Q 025607 90 RDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTL 151 (250)
Q Consensus 90 ~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~i 151 (250)
|+|+.|++++|.++.- .......+++|++|+++++ ++.-...+ ...+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i-~~~~f~~l~~L~~L~l~~N~l~~i~~~~-f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEI-PPDSFSNLPNLETLDLSNNNLTSIPPDA-FSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEE-CTTTTTTGTTESEEEETSSSESEEETTT-TTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCcc-CHHHHcCCCCCCEeEccCCccCccCHHH-HcCCCCCCEEeCcCCcC
Confidence 6899999999965421 1122346799999999987 43211112 24899999999977653
No 35
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.56 E-value=0.0025 Score=39.56 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=21.6
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCC
Q 025607 64 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANP 103 (250)
Q Consensus 64 ~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~ 103 (250)
|+|++|+++++ .+++ +...+.++++|+.|++++|.++
T Consensus 1 ~~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNN-QITD--LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCC-CCcc--cCchHhCCCCCCEEEecCCCCC
Confidence 46777777654 4543 3333566777777777776554
No 36
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.48 E-value=0.0021 Score=39.91 Aligned_cols=35 Identities=34% Similarity=0.381 Sum_probs=25.3
Q ss_pred CCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607 139 PKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 175 (250)
Q Consensus 139 ~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~ 175 (250)
++|++|++..++|++ +...+.++++|+.|+++++.
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence 578888888888885 45546778888888888885
No 37
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.48 E-value=0.0017 Score=55.45 Aligned_cols=85 Identities=20% Similarity=0.290 Sum_probs=44.2
Q ss_pred CCCceeEecCC--CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHH--HhcCCCCcEEeeeCCCCcCCCCCCChhHHHh
Q 025607 115 RNFRELKIMGP--FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILI--LDGLQNLEVLNISHCLLIDVPLAPAPKKIIK 190 (250)
Q Consensus 115 ~~L~~L~L~~~--i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i--~~~c~~L~~Ldls~C~~i~~~~~~~~~~~i~ 190 (250)
|+|+.|.++.. -...++..++..+|+|++|++++|+|.+ +..+ ++..++|..||+..|.-... .
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l----------~ 132 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNL----------D 132 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcccc----------c
Confidence 45555555444 2223344455555666666666666654 2222 33455666666666654432 1
Q ss_pred hhhHHHHHHHHhhhhhhcccc
Q 025607 191 KLDRTILQKAARLRKFLTCME 211 (250)
Q Consensus 191 ~~~~~i~~~~~~L~~l~~c~~ 211 (250)
..-+.+....++|+.+-+|..
T Consensus 133 dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 133 DYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred cHHHHHHHHhhhhcccccccc
Confidence 233445556666666665533
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.40 E-value=0.0022 Score=56.29 Aligned_cols=106 Identities=19% Similarity=0.187 Sum_probs=63.9
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCH-HHHHHHHhcCC
Q 025607 62 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDL-LFASTLNMYLP 139 (250)
Q Consensus 62 ~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d-~~~~~i~~~~~ 139 (250)
-.|.++.|++++. .++.-+ . +..+++|++||||++.++ .+.-+-...-|++.|.+++. +.+ .++. .+-
T Consensus 305 L~Pkir~L~lS~N-~i~~v~--n-La~L~~L~~LDLS~N~Ls--~~~Gwh~KLGNIKtL~La~N~iE~LSGL~----KLY 374 (490)
T KOG1259|consen 305 LAPKLRRLILSQN-RIRTVQ--N-LAELPQLQLLDLSGNLLA--ECVGWHLKLGNIKTLKLAQNKIETLSGLR----KLY 374 (490)
T ss_pred hccceeEEecccc-ceeeeh--h-hhhcccceEeecccchhH--hhhhhHhhhcCEeeeehhhhhHhhhhhhH----hhh
Confidence 3577788887754 333211 1 456678888888877443 22223334467777777655 221 2222 345
Q ss_pred CccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607 140 KLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 177 (250)
Q Consensus 140 ~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i 177 (250)
.|..|++++|+|..-.-..-+.+.|-|+.|.+.+.+.-
T Consensus 375 SLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 375 SLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 78888888888875433333456888999888887653
No 39
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.34 E-value=0.002 Score=60.45 Aligned_cols=143 Identities=16% Similarity=0.135 Sum_probs=96.1
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhhCCC----CcEEEcCCCCCCCHHHHHH---HHhcCCCCCEEEecCCCCCHHHHH
Q 025607 36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQ----LKRLVMPAWNRIKKTGICK---AIRMWRDLESLTMPSIANPPYLME 108 (250)
Q Consensus 36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~----L~~L~L~~c~~itd~~l~~---~~~~c~~L~~L~Ls~c~~~d~~l~ 108 (250)
....+..++++++. ++|+....+.+..+. |+.|.+..| .+++++... .+.+++.|+.++++.|.+.+.+..
T Consensus 113 t~~~L~~L~l~~n~-l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~ 190 (478)
T KOG4308|consen 113 TLPTLGQLDLSGNN-LGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLL 190 (478)
T ss_pred ccccHhHhhcccCC-CccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHHHHHhcccchhHHHHHhcccchhhhH
Confidence 35567778888754 558888888765443 677888877 566655444 345577888888888865454444
Q ss_pred HHHHh-------CCCCceeEecCC-CCHHHHHHHHh---cCCC-ccEEEeecCCCCHHHHHHHHhcC----CCCcEEeee
Q 025607 109 EIAQN-------CRNFRELKIMGP-FDLLFASTLNM---YLPK-LKVLSLRCTTLNRDALILILDGL----QNLEVLNIS 172 (250)
Q Consensus 109 ~i~~~-------c~~L~~L~L~~~-i~d~~~~~i~~---~~~~-L~~L~L~~~~itd~~l~~i~~~c----~~L~~Ldls 172 (250)
.+.+. -.++++|++++| +++.....+.. ..+. +..|++.++.+.|.|+..+.... +.++.++++
T Consensus 191 ~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~ 270 (478)
T KOG4308|consen 191 VLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLS 270 (478)
T ss_pred HHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhh
Confidence 44332 356888999888 77665555443 3344 66678888889988888776664 345888999
Q ss_pred CCCCcCCC
Q 025607 173 HCLLIDVP 180 (250)
Q Consensus 173 ~C~~i~~~ 180 (250)
.|...+.+
T Consensus 271 ~nsi~~~~ 278 (478)
T KOG4308|consen 271 RNSITEKG 278 (478)
T ss_pred cCCccccc
Confidence 88876644
No 40
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.22 E-value=0.0036 Score=33.40 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=9.7
Q ss_pred CCCCEEEecCCCCCHHHHHHHH
Q 025607 90 RDLESLTMPSIANPPYLMEEIA 111 (250)
Q Consensus 90 ~~L~~L~Ls~c~~~d~~l~~i~ 111 (250)
++|++|+|++|.++++++.+|+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 4445555555555554444443
No 41
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=96.16 E-value=0.0025 Score=60.38 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=7.6
Q ss_pred hcCCCCcEEeeeCC
Q 025607 161 DGLQNLEVLNISHC 174 (250)
Q Consensus 161 ~~c~~L~~Ldls~C 174 (250)
++.|+|+.||+...
T Consensus 218 k~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 218 KRLPKLESLDLNRN 231 (873)
T ss_pred hhcchhhhhhcccc
Confidence 34555666655544
No 42
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.13 E-value=0.0022 Score=54.74 Aligned_cols=110 Identities=18% Similarity=0.092 Sum_probs=67.5
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCC-CCHHHHHHHHHhCCCCceeEecCC-CCH-HHHHHHHhcCC
Q 025607 63 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIA-NPPYLMEEIAQNCRNFRELKIMGP-FDL-LFASTLNMYLP 139 (250)
Q Consensus 63 c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~-~~d~~l~~i~~~c~~L~~L~L~~~-i~d-~~~~~i~~~~~ 139 (250)
.-+|+.|++.++...|-.. +..+|+|+.|.++.+. -....+..++..||+|++|+++++ +.+ ..+..+. .++
T Consensus 42 ~~~le~ls~~n~gltt~~~----~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~-~l~ 116 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTN----FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK-ELE 116 (260)
T ss_pred ccchhhhhhhccceeeccc----CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh-hhc
Confidence 3456666665554333322 2456788888888872 234466777788899999999887 543 2333333 677
Q ss_pred CccEEEeecCCCCH--HHHHHHHhcCCCCcEEeeeCCCCc
Q 025607 140 KLKVLSLRCTTLNR--DALILILDGLQNLEVLNISHCLLI 177 (250)
Q Consensus 140 ~L~~L~L~~~~itd--~~l~~i~~~c~~L~~Ldls~C~~i 177 (250)
+|..|+++.+..|. +-=..+..-.|+|++||--.+...
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHhhhhccccccccCCc
Confidence 88888885555443 111334555788888865555443
No 43
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.02 E-value=0.0013 Score=62.89 Aligned_cols=57 Identities=25% Similarity=0.264 Sum_probs=36.2
Q ss_pred cCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCCCCCCChhHHHhhhhHHHHHHHHhhhhhhcc
Q 025607 137 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLDRTILQKAARLRKFLTC 209 (250)
Q Consensus 137 ~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~~~~~~~~~~i~~~~~~i~~~~~~L~~l~~c 209 (250)
.+++|+.|+|++|.||.- .+-.....+|+.||+|....... ...+.+.+||+++...
T Consensus 243 ~l~~LrrLNLS~N~iteL--~~~~~~W~~lEtLNlSrNQLt~L--------------P~avcKL~kL~kLy~n 299 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGNKITEL--NMTEGEWENLETLNLSRNQLTVL--------------PDAVCKLTKLTKLYAN 299 (1255)
T ss_pred hhhhhheeccCcCceeee--eccHHHHhhhhhhccccchhccc--------------hHHHhhhHHHHHHHhc
Confidence 567888888888888763 22334467888888888765433 2334455566666544
No 44
>PLN03150 hypothetical protein; Provisional
Probab=95.93 E-value=0.0062 Score=59.18 Aligned_cols=83 Identities=19% Similarity=0.313 Sum_probs=61.6
Q ss_pred CCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEE
Q 025607 91 DLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVL 169 (250)
Q Consensus 91 ~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~L 169 (250)
.++.|+|+++.++......++ .+++|+.|+|+++ ++...-..+. .+++|+.|+|+.|.++... ...+.++++|++|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~-~L~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~LdLs~N~lsg~i-P~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGSI-PESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCccccCCHHHh-CCCCCCEEECCCCcccCcCChHHh-CCCCCCEEECCCCCCCCCC-chHHhcCCCCCEE
Confidence 378899998877654444554 4799999999988 5433333344 7899999999888887543 3335689999999
Q ss_pred eeeCCCC
Q 025607 170 NISHCLL 176 (250)
Q Consensus 170 dls~C~~ 176 (250)
+++++..
T Consensus 496 ~Ls~N~l 502 (623)
T PLN03150 496 NLNGNSL 502 (623)
T ss_pred ECcCCcc
Confidence 9999864
No 45
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.82 E-value=0.0055 Score=32.66 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=11.2
Q ss_pred CCccEEEeecCCCCHHHHHHHH
Q 025607 139 PKLKVLSLRCTTLNRDALILIL 160 (250)
Q Consensus 139 ~~L~~L~L~~~~itd~~l~~i~ 160 (250)
++|++|+|+.+.|+++|+.+|.
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 4555666655556666555543
No 46
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.64 E-value=0.0052 Score=53.42 Aligned_cols=100 Identities=14% Similarity=0.072 Sum_probs=74.6
Q ss_pred HHhcCC---CCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHH
Q 025607 85 AIRMWR---DLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILIL 160 (250)
Q Consensus 85 ~~~~c~---~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~ 160 (250)
+-.+|. +.+.|+..+|.++|-. |.+..|.|+.|.|+-+ |+. +..+ ..|.+|++|.|+-|.|.+-.=..-+
T Consensus 11 ~raK~sdl~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkIss--L~pl-~rCtrLkElYLRkN~I~sldEL~YL 84 (388)
T KOG2123|consen 11 IRAKCSDLENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKISS--LAPL-QRCTRLKELYLRKNCIESLDELEYL 84 (388)
T ss_pred HHHHhhHHHHhhhhcccCCCccHHH---HHHhcccceeEEeecccccc--chhH-HHHHHHHHHHHHhcccccHHHHHHH
Confidence 344554 5678899999988854 4457899999999855 432 2233 3799999999988888876655567
Q ss_pred hcCCCCcEEeeeCCCCcCCCCCCChhHHHh
Q 025607 161 DGLQNLEVLNISHCLLIDVPLAPAPKKIIK 190 (250)
Q Consensus 161 ~~c~~L~~Ldls~C~~i~~~~~~~~~~~i~ 190 (250)
++.|+|+.|.|...+-...++..+++++++
T Consensus 85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred hcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 899999999999888777777566655554
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.60 E-value=0.00079 Score=65.04 Aligned_cols=102 Identities=19% Similarity=0.232 Sum_probs=45.9
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHH-HhCCCCceeEecCC-CCHHHHHHHHhcCCCc
Q 025607 64 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIA-QNCRNFRELKIMGP-FDLLFASTLNMYLPKL 141 (250)
Q Consensus 64 ~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~-~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L 141 (250)
|.|++|+|++. ++++-. .+..|+.|++|||++|.++. +..++ ..|. |..|++.++ ++ .+..|. ++.+|
T Consensus 187 ~ale~LnLshN-k~~~v~---~Lr~l~~LkhLDlsyN~L~~--vp~l~~~gc~-L~~L~lrnN~l~--tL~gie-~LksL 256 (1096)
T KOG1859|consen 187 PALESLNLSHN-KFTKVD---NLRRLPKLKHLDLSYNCLRH--VPQLSMVGCK-LQLLNLRNNALT--TLRGIE-NLKSL 256 (1096)
T ss_pred HHhhhhccchh-hhhhhH---HHHhcccccccccccchhcc--ccccchhhhh-heeeeecccHHH--hhhhHH-hhhhh
Confidence 45566666542 343322 34556666666666653221 11111 1233 555555444 22 122222 45566
Q ss_pred cEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607 142 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 175 (250)
Q Consensus 142 ~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~ 175 (250)
+.||++.|-+++..=...+.....|+.|++.|.+
T Consensus 257 ~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 257 YGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 6666655555544322223333445555555544
No 48
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.59 E-value=0.0051 Score=50.97 Aligned_cols=88 Identities=17% Similarity=0.180 Sum_probs=61.5
Q ss_pred HhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CC-HHHHHHHHhcCCCccEEEeecCCCCHHH-HH-HHHh
Q 025607 86 IRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FD-LLFASTLNMYLPKLKVLSLRCTTLNRDA-LI-LILD 161 (250)
Q Consensus 86 ~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~-d~~~~~i~~~~~~L~~L~L~~~~itd~~-l~-~i~~ 161 (250)
+.+.+.|..|.++.+.++.-. ..+....|+|+.|.+.+. +. -..+..++ .||+|++|.+-++.+++.. .+ .++.
T Consensus 60 lp~l~rL~tLll~nNrIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa-~~p~L~~Ltll~Npv~~k~~YR~yvl~ 137 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPLA-SCPKLEYLTLLGNPVEHKKNYRLYVLY 137 (233)
T ss_pred CCCccccceEEecCCcceeec-cchhhhccccceEEecCcchhhhhhcchhc-cCCccceeeecCCchhcccCceeEEEE
Confidence 567788889999988765321 233445688999999776 32 23355566 7899999999888888764 22 3455
Q ss_pred cCCCCcEEeeeCCC
Q 025607 162 GLQNLEVLNISHCL 175 (250)
Q Consensus 162 ~c~~L~~Ldls~C~ 175 (250)
..|+|+.||.+.-.
T Consensus 138 klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 138 KLPSLRTLDFQKVT 151 (233)
T ss_pred ecCcceEeehhhhh
Confidence 67999999988643
No 49
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=95.54 E-value=0.00091 Score=63.82 Aligned_cols=22 Identities=23% Similarity=0.156 Sum_probs=12.0
Q ss_pred cCCCccEEEeecCCCCHHHHHH
Q 025607 137 YLPKLKVLSLRCTTLNRDALIL 158 (250)
Q Consensus 137 ~~~~L~~L~L~~~~itd~~l~~ 158 (250)
.+++|+.|.+..|+++-+|+..
T Consensus 289 KL~kL~kLy~n~NkL~FeGiPS 310 (1255)
T KOG0444|consen 289 KLTKLTKLYANNNKLTFEGIPS 310 (1255)
T ss_pred hhHHHHHHHhccCcccccCCcc
Confidence 3456666666556655555443
No 50
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.19 E-value=0.017 Score=54.33 Aligned_cols=141 Identities=15% Similarity=0.088 Sum_probs=81.6
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHh-------hCCCCcEEEcCCCCCCCHHHHHH---HHhcCCC-CCEEEecCCCCCHH
Q 025607 37 RGSIRTLIFHFNLYVSDDQLTYTAE-------RCPQLKRLVMPAWNRIKKTGICK---AIRMWRD-LESLTMPSIANPPY 105 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d~~L~~i~~-------~c~~L~~L~L~~c~~itd~~l~~---~~~~c~~-L~~L~Ls~c~~~d~ 105 (250)
...++.+++..+... +.....+.. .-.++++|+|++| .+|...... .+..-+. +.+|++..|.+.|.
T Consensus 171 ~~~l~~l~l~~n~l~-~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 171 NEHLTELDLSLNGLI-ELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred ccchhHHHHHhcccc-hhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 555665555444433 222222221 2345777888777 455443333 3444455 66677777777777
Q ss_pred HHHHHHHhC----CCCceeEecCC-CCHHHHHHHH---hcCCCccEEEeecCCCCHHHHHHHHhc---CCCCcEEeeeCC
Q 025607 106 LMEEIAQNC----RNFRELKIMGP-FDLLFASTLN---MYLPKLKVLSLRCTTLNRDALILILDG---LQNLEVLNISHC 174 (250)
Q Consensus 106 ~l~~i~~~c----~~L~~L~L~~~-i~d~~~~~i~---~~~~~L~~L~L~~~~itd~~l~~i~~~---c~~L~~Ldls~C 174 (250)
.+..+.+.. +.++++++..+ +++.+...++ ..+++++.|.++++.+++.+...+++. ...+.++-+.++
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~ 328 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGT 328 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcccc
Confidence 666665444 34477777777 6655544433 356788888888888888877766544 345555556655
Q ss_pred CCcCC
Q 025607 175 LLIDV 179 (250)
Q Consensus 175 ~~i~~ 179 (250)
...+.
T Consensus 329 ~~~~~ 333 (478)
T KOG4308|consen 329 GKGTR 333 (478)
T ss_pred Cccch
Confidence 55543
No 51
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.06 E-value=0.031 Score=56.43 Aligned_cols=132 Identities=21% Similarity=0.223 Sum_probs=78.0
Q ss_pred hcCCCccEEEecCCC----CCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHH
Q 025607 35 LSRGSIRTLIFHFNL----YVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEI 110 (250)
Q Consensus 35 ~~~~~l~~L~l~~~~----~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i 110 (250)
..++.++.|.+-.+. .++.+. ..+.|.|+.|+|++|...+ .+...++.+-+|+.|+++++.++ .....+
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~f----f~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~t~I~-~LP~~l 614 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGEF----FRSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSDTGIS-HLPSGL 614 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHHH----HhhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccCCCcc-ccchHH
Confidence 445567777654432 122222 3457899999999875543 34555777888999999998765 111222
Q ss_pred HHhCCCCceeEecCCCCHHHHHHHHhcCCCccEEEeecCCCC-HHHHHHHHhcCCCCcEEeeeCC
Q 025607 111 AQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTLN-RDALILILDGLQNLEVLNISHC 174 (250)
Q Consensus 111 ~~~c~~L~~L~L~~~i~d~~~~~i~~~~~~L~~L~L~~~~it-d~~l~~i~~~c~~L~~Ldls~C 174 (250)
...+.|.+|++...-.-..+..+...+++|++|.+.+...+ +.....-+....+|+.+.+..+
T Consensus 615 -~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 615 -GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred -HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence 23467888888754211122445556899999999444322 2223333455666666666443
No 52
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=94.87 E-value=0.0048 Score=61.10 Aligned_cols=109 Identities=22% Similarity=0.233 Sum_probs=67.4
Q ss_pred hcCCCCCEEEecCCCC---CH-------HHHHHHHHhCCC--------------CceeEecCC-CCHHHHHHHHhcCCCc
Q 025607 87 RMWRDLESLTMPSIAN---PP-------YLMEEIAQNCRN--------------FRELKIMGP-FDLLFASTLNMYLPKL 141 (250)
Q Consensus 87 ~~c~~L~~L~Ls~c~~---~d-------~~l~~i~~~c~~--------------L~~L~L~~~-i~d~~~~~i~~~~~~L 141 (250)
.+.+.|++|+|..+.+ .+ ..+..+...+.. |+.|.+.+. ++|+.+..+. ++++|
T Consensus 307 e~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~-~~~hL 385 (1081)
T KOG0618|consen 307 EGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV-NFKHL 385 (1081)
T ss_pred cccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc-cccce
Confidence 3466788999988743 22 223333333333 344444444 7888887777 89999
Q ss_pred cEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCCCCCCChhHHHhhhhHHHHHHHHhhhhhhcccc
Q 025607 142 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLDRTILQKAARLRKFLTCME 211 (250)
Q Consensus 142 ~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~~~~~~~~~~i~~~~~~i~~~~~~L~~l~~c~~ 211 (250)
|.|+|++|+++.-. ..-+.+.+.|++|++||...-+. ..-+..+.+|+.++.+++
T Consensus 386 KVLhLsyNrL~~fp-as~~~kle~LeeL~LSGNkL~~L--------------p~tva~~~~L~tL~ahsN 440 (1081)
T KOG0618|consen 386 KVLHLSYNRLNSFP-ASKLRKLEELEELNLSGNKLTTL--------------PDTVANLGRLHTLRAHSN 440 (1081)
T ss_pred eeeeecccccccCC-HHHHhchHHhHHHhcccchhhhh--------------hHHHHhhhhhHHHhhcCC
Confidence 99999877655221 11234678899999999876443 233345556666665544
No 53
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=94.55 E-value=0.024 Score=56.24 Aligned_cols=74 Identities=23% Similarity=0.199 Sum_probs=37.7
Q ss_pred CCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEE
Q 025607 91 DLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVL 169 (250)
Q Consensus 91 ~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~L 169 (250)
+|+.|++++|.++. +....++|+.|+++++ ++. +.....+|+.|+++.|.++. +..-+.++++|+.|
T Consensus 383 ~L~~LdLs~N~Lt~-----LP~l~s~L~~LdLS~N~Lss-----IP~l~~~L~~L~Ls~NqLt~--LP~sl~~L~~L~~L 450 (788)
T PRK15387 383 GLKELIVSGNRLTS-----LPVLPSELKELMVSGNRLTS-----LPMLPSGLLSLSVYRNQLTR--LPESLIHLSSETTV 450 (788)
T ss_pred ccceEEecCCcccC-----CCCcccCCCEEEccCCcCCC-----CCcchhhhhhhhhccCcccc--cChHHhhccCCCeE
Confidence 45666666554431 1111245666666655 321 11112355666665566552 32224457778888
Q ss_pred eeeCCCC
Q 025607 170 NISHCLL 176 (250)
Q Consensus 170 dls~C~~ 176 (250)
+++++..
T Consensus 451 dLs~N~L 457 (788)
T PRK15387 451 NLEGNPL 457 (788)
T ss_pred ECCCCCC
Confidence 8877753
No 54
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=94.12 E-value=0.066 Score=29.71 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=17.8
Q ss_pred CCccEEEeecCCCCHHHHHHHHhc
Q 025607 139 PKLKVLSLRCTTLNRDALILILDG 162 (250)
Q Consensus 139 ~~L~~L~L~~~~itd~~l~~i~~~ 162 (250)
++|++|+|+.|.++++|..++.+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHH
Confidence 567778887788888887777654
No 55
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=94.05 E-value=0.051 Score=54.00 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=19.8
Q ss_pred CCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCH
Q 025607 115 RNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNR 153 (250)
Q Consensus 115 ~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd 153 (250)
++|+.|+++++ ++ .+....++|+.|+++.|.++.
T Consensus 282 ~~L~~L~Ls~N~Lt-----~LP~~p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 282 SGLCKLWIFGNQLT-----SLPVLPPGLQELSVSDNQLAS 316 (788)
T ss_pred hhcCEEECcCCccc-----cccccccccceeECCCCcccc
Confidence 44555555554 32 122234688888887777664
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=93.90 E-value=0.022 Score=55.54 Aligned_cols=23 Identities=13% Similarity=0.171 Sum_probs=14.9
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHH
Q 025607 63 CPQLKRLVMPAWNRIKKTGICKA 85 (250)
Q Consensus 63 c~~L~~L~L~~c~~itd~~l~~~ 85 (250)
+..|+.|-|.+|+.-+-.|+..+
T Consensus 108 F~sLr~LElrg~~L~~~~GL~~l 130 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQEL 130 (1096)
T ss_pred ccceeeEEecCcchhhhhhhHHH
Confidence 45678888887765555555443
No 57
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=93.81 E-value=0.11 Score=48.91 Aligned_cols=44 Identities=11% Similarity=0.152 Sum_probs=20.1
Q ss_pred HHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCC
Q 025607 57 TYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI 100 (250)
Q Consensus 57 ~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c 100 (250)
..+....|.+.+++|+.-....-+++..+....|+|..|+|+++
T Consensus 211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred HHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 33444444555555543333333444444444555555555544
No 58
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=92.55 E-value=0.048 Score=48.09 Aligned_cols=58 Identities=21% Similarity=0.328 Sum_probs=29.7
Q ss_pred cCCCCCEEEecCCCCC--HHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCC
Q 025607 88 MWRDLESLTMPSIANP--PYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLN 152 (250)
Q Consensus 88 ~c~~L~~L~Ls~c~~~--d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~it 152 (250)
.|.-|++||||++.++ |+++. -.|+++.|+++.. +.. +..++ .+++|..|+|++|.++
T Consensus 282 TWq~LtelDLS~N~I~~iDESvK----L~Pkir~L~lS~N~i~~--v~nLa-~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVK----LAPKLRRLILSQNRIRT--VQNLA-ELPQLQLLDLSGNLLA 342 (490)
T ss_pred hHhhhhhccccccchhhhhhhhh----hccceeEEeccccceee--ehhhh-hcccceEeecccchhH
Confidence 3556667777766432 33332 2366666666655 221 11122 4566666666555544
No 59
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=92.27 E-value=0.23 Score=27.46 Aligned_cols=23 Identities=13% Similarity=0.050 Sum_probs=12.1
Q ss_pred CCCCEEEecCCCCCHHHHHHHHH
Q 025607 90 RDLESLTMPSIANPPYLMEEIAQ 112 (250)
Q Consensus 90 ~~L~~L~Ls~c~~~d~~l~~i~~ 112 (250)
+.|++|+|++|.+++++..++++
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 34555555555555555555443
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=92.13 E-value=0.097 Score=48.21 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=15.6
Q ss_pred CCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCC
Q 025607 65 QLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI 100 (250)
Q Consensus 65 ~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c 100 (250)
+|++|.+++|..++. +...+ .++|++|++++|
T Consensus 73 sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 73 ELTEITIENCNNLTT--LPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred CCcEEEccCCCCccc--CCchh--hhhhhheEccCc
Confidence 466666666655422 11111 145666666665
No 61
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=92.06 E-value=0.19 Score=49.91 Aligned_cols=99 Identities=14% Similarity=0.123 Sum_probs=49.4
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCcc
Q 025607 64 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK 142 (250)
Q Consensus 64 ~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~ 142 (250)
++|+.|++++|. ++. +... -+++|+.|++++|.++. ....+ .++|++|+++++ ++. ....+. +.|+
T Consensus 325 ~sL~~L~Ls~N~-Lt~--LP~~--l~~sL~~L~Ls~N~L~~-LP~~l---p~~L~~LdLs~N~Lt~-LP~~l~---~sL~ 391 (754)
T PRK15370 325 PGLKTLEAGENA-LTS--LPAS--LPPELQVLDVSKNQITV-LPETL---PPTITTLDVSRNALTN-LPENLP---AALQ 391 (754)
T ss_pred ccceeccccCCc-ccc--CChh--hcCcccEEECCCCCCCc-CChhh---cCCcCEEECCCCcCCC-CCHhHH---HHHH
Confidence 456666665542 221 1111 12567777777775541 11111 256777777766 331 000111 2466
Q ss_pred EEEeecCCCCH--HHHHHHHhcCCCCcEEeeeCCC
Q 025607 143 VLSLRCTTLNR--DALILILDGLQNLEVLNISHCL 175 (250)
Q Consensus 143 ~L~L~~~~itd--~~l~~i~~~c~~L~~Ldls~C~ 175 (250)
.|++++|+++. .++......+|++..|++.+..
T Consensus 392 ~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 392 IMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 66665566552 2344445556777777777654
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=90.38 E-value=0.12 Score=40.71 Aligned_cols=106 Identities=15% Similarity=0.175 Sum_probs=56.7
Q ss_pred CcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEE
Q 025607 66 LKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVL 144 (250)
Q Consensus 66 L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L 144 (250)
+..++|+.|...--.....-+.+-..|...+|+++.+.+ ....+....|-++.|+++.. ++|--.. ++ .+|.|+.|
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neisdvPeE-~A-am~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEISDVPEE-LA-AMPALRSL 105 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhhhchHH-Hh-hhHHhhhc
Confidence 566777777433222222223444556666777764322 12234444567777777666 5543333 44 67788888
Q ss_pred EeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607 145 SLRCTTLNRDALILILDGLQNLEVLNISHCLL 176 (250)
Q Consensus 145 ~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~ 176 (250)
+++.|.+... .+-++. ..+|-.||..+...
T Consensus 106 Nl~~N~l~~~-p~vi~~-L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 106 NLRFNPLNAE-PRVIAP-LIKLDMLDSPENAR 135 (177)
T ss_pred ccccCccccc-hHHHHH-HHhHHHhcCCCCcc
Confidence 8877766643 233333 55556665555443
No 63
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.08 E-value=0.28 Score=44.96 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=32.2
Q ss_pred cCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607 137 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL 176 (250)
Q Consensus 137 ~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~ 176 (250)
.+.+|..|+|..+.+-. +..++.+|.+|++|++.|.+.
T Consensus 503 nm~nL~tLDL~nNdlq~--IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 503 NMRNLTTLDLQNNDLQQ--IPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred hhhhcceeccCCCchhh--CChhhccccceeEEEecCCcc
Confidence 68899999998777654 677889999999999999764
No 64
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=89.46 E-value=0.16 Score=40.01 Aligned_cols=94 Identities=15% Similarity=0.234 Sum_probs=65.5
Q ss_pred HHHHHHhcCC---CCCEEEecCCCCC--HHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHH
Q 025607 81 GICKAIRMWR---DLESLTMPSIANP--PYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRD 154 (250)
Q Consensus 81 ~l~~~~~~c~---~L~~L~Ls~c~~~--d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~ 154 (250)
++.....+|. .+..++|+.|.+. .+++..+.+. .+|+..+|++. +.+ .-..+...+|.++.|++..+.|++-
T Consensus 15 gV~evVercedakE~h~ldLssc~lm~i~davy~l~~~-~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neisdv 92 (177)
T KOG4579|consen 15 GVNEVVERCEDAKELHFLDLSSCQLMYIADAVYMLSKG-YELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEISDV 92 (177)
T ss_pred hHHHHHHhhHHHHHhhhcccccchhhHHHHHHHHHhCC-ceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhhhc
Confidence 3444455553 5777899999543 4555555543 77888888766 221 1224455788999999999999986
Q ss_pred HHHHHHhcCCCCcEEeeeCCCCcC
Q 025607 155 ALILILDGLQNLEVLNISHCLLID 178 (250)
Q Consensus 155 ~l~~i~~~c~~L~~Ldls~C~~i~ 178 (250)
-.+ +...|.|+.||++......
T Consensus 93 PeE--~Aam~aLr~lNl~~N~l~~ 114 (177)
T KOG4579|consen 93 PEE--LAAMPALRSLNLRFNPLNA 114 (177)
T ss_pred hHH--HhhhHHhhhcccccCcccc
Confidence 655 6789999999999987654
No 65
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=89.11 E-value=0.3 Score=44.60 Aligned_cols=83 Identities=20% Similarity=0.139 Sum_probs=45.0
Q ss_pred HhcCCCCCEEEecCCCCC---HHHHHHHHHhCCCCceeEecCCCCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhc
Q 025607 86 IRMWRDLESLTMPSIANP---PYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDG 162 (250)
Q Consensus 86 ~~~c~~L~~L~Ls~c~~~---d~~l~~i~~~c~~L~~L~L~~~i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~ 162 (250)
++++|+|+.|+++++.++ +.+++- ...+++|.|.+.--...-..+.+.+.+|+.|+|.+|+||--+-.++ +.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~----~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF-~~ 344 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEG----AAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF-QT 344 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcc----hhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc-cc
Confidence 566777777777777544 333332 2456677765441111112233466788888887777775433321 23
Q ss_pred CCCCcEEeeeC
Q 025607 163 LQNLEVLNISH 173 (250)
Q Consensus 163 c~~L~~Ldls~ 173 (250)
...|..|++-+
T Consensus 345 ~~~l~~l~l~~ 355 (498)
T KOG4237|consen 345 LFSLSTLNLLS 355 (498)
T ss_pred cceeeeeehcc
Confidence 34455555543
No 66
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=88.73 E-value=0.31 Score=49.31 Aligned_cols=110 Identities=24% Similarity=0.217 Sum_probs=66.4
Q ss_pred hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCC
Q 025607 61 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLP 139 (250)
Q Consensus 61 ~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~ 139 (250)
..||+|++|-+.+-..--...-..++...|.|+.|||++|.-.......|+. .-+|+.|++++. +. .--..+ ..+.
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~LryL~L~~t~I~-~LP~~l-~~Lk 618 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLRYLDLSDTGIS-HLPSGL-GNLK 618 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh-hhhhhcccccCCCcc-ccchHH-HHHH
Confidence 3577888887764321011112234667899999999987433334444554 467888998877 54 111122 2567
Q ss_pred CccEEEeecCC-CCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607 140 KLKVLSLRCTT-LNRDALILILDGLQNLEVLNISHCL 175 (250)
Q Consensus 140 ~L~~L~L~~~~-itd~~l~~i~~~c~~L~~Ldls~C~ 175 (250)
+|.+|++..+. ... +.-+....++|++|.+.+-.
T Consensus 619 ~L~~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLES--IPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhheecccccccccc--ccchhhhcccccEEEeeccc
Confidence 88888884322 111 14455568899999888765
No 67
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=87.94 E-value=0.14 Score=47.18 Aligned_cols=106 Identities=21% Similarity=0.217 Sum_probs=59.3
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCc
Q 025607 63 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL 141 (250)
Q Consensus 63 c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L 141 (250)
+.+|+.|++.. +.+. .+...+..+++|+.|+++++.+++ +..+. .++.|+.|++.++ +++-.- + ..+++|
T Consensus 94 ~~~l~~l~l~~-n~i~--~i~~~l~~~~~L~~L~ls~N~I~~--i~~l~-~l~~L~~L~l~~N~i~~~~~--~-~~l~~L 164 (414)
T KOG0531|consen 94 LKSLEALDLYD-NKIE--KIENLLSSLVNLQVLDLSFNKITK--LEGLS-TLTLLKELNLSGNLISDISG--L-ESLKSL 164 (414)
T ss_pred ccceeeeeccc-cchh--hcccchhhhhcchheecccccccc--ccchh-hccchhhheeccCcchhccC--C-ccchhh
Confidence 45566666653 2221 222224567778888887776542 11222 2344777777766 432111 1 126777
Q ss_pred cEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607 142 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 178 (250)
Q Consensus 142 ~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~ 178 (250)
+.++++.+.+++-.-.- +..+..|+.+++.+.....
T Consensus 165 ~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred hcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence 77777777776644321 4567777777777776554
No 68
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=87.90 E-value=0.87 Score=45.39 Aligned_cols=88 Identities=10% Similarity=0.079 Sum_probs=59.1
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CC--HHHHHHHHhcCC
Q 025607 63 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FD--LLFASTLNMYLP 139 (250)
Q Consensus 63 c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~--d~~~~~i~~~~~ 139 (250)
+++|+.|+|+++ .++. +...+ .+.|+.|+|++|.++. ....+. +.|+.|+++++ ++ ...+......+|
T Consensus 345 ~~sL~~L~Ls~N-~L~~--LP~~l--p~~L~~LdLs~N~Lt~-LP~~l~---~sL~~LdLs~N~L~~LP~sl~~~~~~~~ 415 (754)
T PRK15370 345 PPELQVLDVSKN-QITV--LPETL--PPTITTLDVSRNALTN-LPENLP---AALQIMQASRNNLVRLPESLPHFRGEGP 415 (754)
T ss_pred cCcccEEECCCC-CCCc--CChhh--cCCcCEEECCCCcCCC-CCHhHH---HHHHHHhhccCCcccCchhHHHHhhcCC
Confidence 478999999987 4442 21111 2689999999996652 111222 35888888877 43 123444444679
Q ss_pred CccEEEeecCCCCHHHHHHH
Q 025607 140 KLKVLSLRCTTLNRDALILI 159 (250)
Q Consensus 140 ~L~~L~L~~~~itd~~l~~i 159 (250)
++..|++..|.++...+..+
T Consensus 416 ~l~~L~L~~Npls~~tl~~L 435 (754)
T PRK15370 416 QPTRIIVEYNPFSERTIQNM 435 (754)
T ss_pred CccEEEeeCCCccHHHHHHH
Confidence 99999999999998777654
No 69
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=87.64 E-value=1.4 Score=41.75 Aligned_cols=89 Identities=17% Similarity=0.083 Sum_probs=64.7
Q ss_pred HHHHhcCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCC--CCCCHHHHHHHHhcCCCCCEEEecCCCCC-----
Q 025607 31 ISLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAW--NRIKKTGICKAIRMWRDLESLTMPSIANP----- 103 (250)
Q Consensus 31 ~~~~~~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c--~~itd~~l~~~~~~c~~L~~L~Ls~c~~~----- 103 (250)
..+..--+.+..++|+.+....-+.+..|+...|+|+.|+|++- ..-++..+.+. +...||+|-+.||.+.
T Consensus 211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf~~ 288 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTFSD 288 (585)
T ss_pred HHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccchhh
Confidence 44555566777788888888888889999999999999999975 22233333332 4467899999998542
Q ss_pred -HHHHHHHHHhCCCCceeE
Q 025607 104 -PYLMEEIAQNCRNFRELK 121 (250)
Q Consensus 104 -d~~l~~i~~~c~~L~~L~ 121 (250)
.+-+.+|-...|+|..|+
T Consensus 289 ~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 289 RSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hHHHHHHHHHhcchheeec
Confidence 345667788889988775
No 70
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=86.45 E-value=0.29 Score=44.42 Aligned_cols=39 Identities=28% Similarity=0.342 Sum_probs=23.4
Q ss_pred cCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607 137 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 178 (250)
Q Consensus 137 ~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~ 178 (250)
..+.|+.|++.++.+++-.- .....+|+.|++++-....
T Consensus 253 ~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 253 NLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred cccccceecccccccccccc---ccccCccCEEeccCccccc
Confidence 45566677776666665332 4455667777777655443
No 71
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=83.35 E-value=0.53 Score=42.71 Aligned_cols=78 Identities=19% Similarity=0.153 Sum_probs=35.6
Q ss_pred CCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEE
Q 025607 91 DLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVL 169 (250)
Q Consensus 91 ~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~L 169 (250)
+|+.|+++++.+..-. .-...+|+|+.|+++.+ +++-.... ...++|+.|+++.+.+++- .........|++|
T Consensus 141 nL~~L~l~~N~i~~l~--~~~~~l~~L~~L~l~~N~l~~l~~~~--~~~~~L~~L~ls~N~i~~l--~~~~~~~~~L~~l 214 (394)
T COG4886 141 NLKELDLSDNKIESLP--SPLRNLPNLKNLDLSFNDLSDLPKLL--SNLSNLNNLDLSGNKISDL--PPEIELLSALEEL 214 (394)
T ss_pred hcccccccccchhhhh--hhhhccccccccccCCchhhhhhhhh--hhhhhhhheeccCCccccC--chhhhhhhhhhhh
Confidence 5666666655433211 12234566666666555 33321111 0345666666655555542 2211223335555
Q ss_pred eeeCC
Q 025607 170 NISHC 174 (250)
Q Consensus 170 dls~C 174 (250)
.+++.
T Consensus 215 ~~~~N 219 (394)
T COG4886 215 DLSNN 219 (394)
T ss_pred hhcCC
Confidence 55554
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=83.09 E-value=1 Score=21.76 Aligned_cols=11 Identities=18% Similarity=0.389 Sum_probs=4.9
Q ss_pred CCCEEEecCCC
Q 025607 91 DLESLTMPSIA 101 (250)
Q Consensus 91 ~L~~L~Ls~c~ 101 (250)
+|+.|+|++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 45555555553
No 73
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=82.41 E-value=0.19 Score=41.08 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=29.9
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCC--CCHHHHHHHHHhCCCCceeEec
Q 025607 63 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIA--NPPYLMEEIAQNCRNFRELKIM 123 (250)
Q Consensus 63 c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~--~~d~~l~~i~~~c~~L~~L~L~ 123 (250)
..||+.|+++. +.++ .+..-+++.|.|+.|+++-+. +.+.++. ..|.|+.|++.
T Consensus 55 l~nlevln~~n-nqie--~lp~~issl~klr~lnvgmnrl~~lprgfg----s~p~levldlt 110 (264)
T KOG0617|consen 55 LKNLEVLNLSN-NQIE--ELPTSISSLPKLRILNVGMNRLNILPRGFG----SFPALEVLDLT 110 (264)
T ss_pred hhhhhhhhccc-chhh--hcChhhhhchhhhheecchhhhhcCccccC----CCchhhhhhcc
Confidence 45677777763 2332 233446677888888877652 2222221 24666666664
No 74
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=81.69 E-value=3.7 Score=36.70 Aligned_cols=85 Identities=11% Similarity=0.137 Sum_probs=53.8
Q ss_pred HHHHHHHhcCCCCCEEEecCC-CCCHHHHHHHHHhC---CCCceeEecCC-CCHHHHHHHH---hcCCCccEEEeecCCC
Q 025607 80 TGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQNC---RNFRELKIMGP-FDLLFASTLN---MYLPKLKVLSLRCTTL 151 (250)
Q Consensus 80 ~~l~~~~~~c~~L~~L~Ls~c-~~~d~~l~~i~~~c---~~L~~L~L~~~-i~d~~~~~i~---~~~~~L~~L~L~~~~i 151 (250)
..+..+=..=|.|++++|+.. .++...+....... .+.+.+.+.+. .+|..+.+++ +.++.|++|++.++-|
T Consensus 188 ~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFI 267 (353)
T KOG3735|consen 188 SSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFI 267 (353)
T ss_pred HHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheecccccc
Confidence 344443334477777777776 67766666665443 34444444444 4555444444 5678888888888888
Q ss_pred CHHHHHHHHhcCC
Q 025607 152 NRDALILILDGLQ 164 (250)
Q Consensus 152 td~~l~~i~~~c~ 164 (250)
|..|+.++....+
T Consensus 268 tg~gi~a~~~al~ 280 (353)
T KOG3735|consen 268 TGLGIMALLRALQ 280 (353)
T ss_pred ccHHHHHHHHHHh
Confidence 8888888876654
No 75
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=81.49 E-value=0.46 Score=43.71 Aligned_cols=109 Identities=24% Similarity=0.243 Sum_probs=70.5
Q ss_pred hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCH-HHHHHHHhcC
Q 025607 61 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDL-LFASTLNMYL 138 (250)
Q Consensus 61 ~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d-~~~~~i~~~~ 138 (250)
..+..++.+++.. +.++. +..-+..+.+|+.|++..+.+. .+..+...+++|++|++++. +++ .++. .+
T Consensus 69 ~~l~~l~~l~l~~-n~i~~--~~~~l~~~~~l~~l~l~~n~i~--~i~~~l~~~~~L~~L~ls~N~I~~i~~l~----~l 139 (414)
T KOG0531|consen 69 ESLTSLKELNLRQ-NLIAK--ILNHLSKLKSLEALDLYDNKIE--KIENLLSSLVNLQVLDLSFNKITKLEGLS----TL 139 (414)
T ss_pred HHhHhHHhhccch-hhhhh--hhcccccccceeeeeccccchh--hcccchhhhhcchheeccccccccccchh----hc
Confidence 3455666665432 12222 1122456788999999887543 12221456899999999988 543 3333 45
Q ss_pred CCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCCCC
Q 025607 139 PKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPL 181 (250)
Q Consensus 139 ~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~~~ 181 (250)
+.|+.|++.+|.|++-.- ...++.|+.++++++.......
T Consensus 140 ~~L~~L~l~~N~i~~~~~---~~~l~~L~~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 140 TLLKELNLSGNLISDISG---LESLKSLKLLDLSYNRIVDIEN 179 (414)
T ss_pred cchhhheeccCcchhccC---CccchhhhcccCCcchhhhhhh
Confidence 669999999999887432 2337899999999998766543
No 76
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=80.54 E-value=1.2 Score=24.26 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=17.1
Q ss_pred CccEEEeecCCCCH-HHHHHHHhcCC
Q 025607 140 KLKVLSLRCTTLNR-DALILILDGLQ 164 (250)
Q Consensus 140 ~L~~L~L~~~~itd-~~l~~i~~~c~ 164 (250)
.||.|.|.....++ +++..++.+||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 47888885555444 47888888876
No 77
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=77.94 E-value=1.2 Score=23.00 Aligned_cols=13 Identities=38% Similarity=0.465 Sum_probs=10.7
Q ss_pred CCcEEeeeCCCCcC
Q 025607 165 NLEVLNISHCLLID 178 (250)
Q Consensus 165 ~L~~Ldls~C~~i~ 178 (250)
+|++||+++| +++
T Consensus 1 ~L~~Ldls~n-~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGN-NLT 13 (22)
T ss_dssp TESEEEETSS-EES
T ss_pred CccEEECCCC-cCE
Confidence 5899999999 555
No 78
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=74.91 E-value=0.044 Score=44.67 Aligned_cols=107 Identities=21% Similarity=0.144 Sum_probs=55.9
Q ss_pred hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCCCCHHHHHHHH---hc
Q 025607 61 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLN---MY 137 (250)
Q Consensus 61 ~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~i~d~~~~~i~---~~ 137 (250)
.+.|+|+.|++..- .+. .+..-++.+|-||.||+++++++...+..=.-....|+.|.++. ..+..+. ..
T Consensus 76 ssl~klr~lnvgmn-rl~--~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~d----ndfe~lp~dvg~ 148 (264)
T KOG0617|consen 76 SSLPKLRILNVGMN-RLN--ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD----NDFEILPPDVGK 148 (264)
T ss_pred hhchhhhheecchh-hhh--cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcC----CCcccCChhhhh
Confidence 35788999988643 111 11223567899999999998765443221111122344444432 2222221 14
Q ss_pred CCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607 138 LPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL 176 (250)
Q Consensus 138 ~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~ 176 (250)
+.+|+.|.++.+.+-. +..-+....+|++|.+.+...
T Consensus 149 lt~lqil~lrdndll~--lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 149 LTNLQILSLRDNDLLS--LPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hcceeEEeeccCchhh--CcHHHHHHHHHHHHhccccee
Confidence 5677777774443211 122223345677777777654
No 79
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=72.65 E-value=3.7 Score=34.35 Aligned_cols=85 Identities=14% Similarity=0.174 Sum_probs=56.0
Q ss_pred CCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcE
Q 025607 90 RDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEV 168 (250)
Q Consensus 90 ~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~ 168 (250)
.+...+||+.+.+.. .....+.++|..|.++.. ++.- -..+.+.+|+|+.|.|.+|.|-.-|=..=+..||.|++
T Consensus 42 d~~d~iDLtdNdl~~---l~~lp~l~rL~tLll~nNrIt~I-~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK---LDNLPHLPRLHTLLLNNNRITRI-DPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred cccceecccccchhh---cccCCCccccceEEecCCcceee-ccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 456677777763321 011235688999999887 4431 12345567999999998888776543333568999999
Q ss_pred EeeeCCCCcC
Q 025607 169 LNISHCLLID 178 (250)
Q Consensus 169 Ldls~C~~i~ 178 (250)
|.+-+.+--+
T Consensus 118 Ltll~Npv~~ 127 (233)
T KOG1644|consen 118 LTLLGNPVEH 127 (233)
T ss_pred eeecCCchhc
Confidence 9888776443
No 80
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=70.07 E-value=13 Score=33.33 Aligned_cols=99 Identities=13% Similarity=0.106 Sum_probs=70.9
Q ss_pred CCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHH---HhcCCCCCEEEecCCCCCHH---HHHHHHHhCCCCceeE
Q 025607 48 NLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKA---IRMWRDLESLTMPSIANPPY---LMEEIAQNCRNFRELK 121 (250)
Q Consensus 48 ~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~---~~~c~~L~~L~Ls~c~~~d~---~l~~i~~~c~~L~~L~ 121 (250)
+..-.++.+..+-..=|+++..+++.-..|+...+... +..-...+...+.+...+|. ++..+.+.|+.|++|+
T Consensus 182 n~t~~e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~sln 261 (353)
T KOG3735|consen 182 NPTDVESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLN 261 (353)
T ss_pred CCchHHHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhhee
Confidence 34456788888888889999999998888887765554 44555666666666655554 3444557889999999
Q ss_pred ecCC-CCHHHHHHHHhcCC---CccEEEe
Q 025607 122 IMGP-FDLLFASTLNMYLP---KLKVLSL 146 (250)
Q Consensus 122 L~~~-i~d~~~~~i~~~~~---~L~~L~L 146 (250)
+.+. ||..++.++...++ .|..|.+
T Consensus 262 vesnFItg~gi~a~~~al~~n~tl~el~~ 290 (353)
T KOG3735|consen 262 VESNFITGLGIMALLRALQSNKSLTELKN 290 (353)
T ss_pred ccccccccHHHHHHHHHHhccchhhHhhh
Confidence 9888 89999888876554 4444444
No 81
>PRK15386 type III secretion protein GogB; Provisional
Probab=67.44 E-value=12 Score=34.66 Aligned_cols=89 Identities=15% Similarity=0.225 Sum_probs=54.7
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCC-CCCEEEecCC-CCCHHHHHHHHHhCCCCceeEecCCCCHHHHHHHHhcCC
Q 025607 62 RCPQLKRLVMPAWNRIKKTGICKAIRMWR-DLESLTMPSI-ANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLP 139 (250)
Q Consensus 62 ~c~~L~~L~L~~c~~itd~~l~~~~~~c~-~L~~L~Ls~c-~~~d~~l~~i~~~c~~L~~L~L~~~i~d~~~~~i~~~~~ 139 (250)
.|+++++|++++| .++.- ...| +|++|.+++| .++. ....+ .++|++|++++|-.- .. --+
T Consensus 50 ~~~~l~~L~Is~c-~L~sL------P~LP~sLtsL~Lsnc~nLts-LP~~L---P~nLe~L~Ls~Cs~L---~s---LP~ 112 (426)
T PRK15386 50 EARASGRLYIKDC-DIESL------PVLPNELTEITIENCNNLTT-LPGSI---PEGLEKLTVCHCPEI---SG---LPE 112 (426)
T ss_pred HhcCCCEEEeCCC-CCccc------CCCCCCCcEEEccCCCCccc-CCchh---hhhhhheEccCcccc---cc---ccc
Confidence 3799999999988 44321 1344 6999999988 4321 11112 368999999877211 11 235
Q ss_pred CccEEEeecCCCCHHHHHHHHhcC-CCCcEEeeeC
Q 025607 140 KLKVLSLRCTTLNRDALILILDGL-QNLEVLNISH 173 (250)
Q Consensus 140 ~L~~L~L~~~~itd~~l~~i~~~c-~~L~~Ldls~ 173 (250)
.|+.|++.++.... + ... ++|+.|.+.+
T Consensus 113 sLe~L~L~~n~~~~--L----~~LPssLk~L~I~~ 141 (426)
T PRK15386 113 SVRSLEIKGSATDS--I----KNVPNGLTSLSINS 141 (426)
T ss_pred ccceEEeCCCCCcc--c----ccCcchHhheeccc
Confidence 78999986555443 2 223 4678887754
No 82
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=67.33 E-value=5.3 Score=36.79 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=42.7
Q ss_pred HHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607 111 AQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 177 (250)
Q Consensus 111 ~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i 177 (250)
.+..|+|++|++++. ++.-.-.++. ....++.|.|..|++..-. ..+.++..+|+.|++.+...-
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe-~~a~l~eL~L~~N~l~~v~-~~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFE-GAAELQELYLTRNKLEFVS-SGMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhc-chhhhhhhhcCcchHHHHH-HHhhhccccceeeeecCCeeE
Confidence 345688888888877 4432222222 4567888888777765432 234678899999999987643
No 83
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=66.85 E-value=0.48 Score=29.31 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=21.7
Q ss_pred CcC----CcceeeecCCCchHHHHHHHHHHH
Q 025607 8 KIP----LEPYVYVHGHSDKQLTRILKISLS 34 (250)
Q Consensus 8 ~~p----l~if~~l~~~~~~~l~~v~~~~~~ 34 (250)
.+| .+||+|++..++.+++.|||.+..
T Consensus 3 ~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~ 33 (47)
T PF12937_consen 3 SLPDEILLEIFSYLDPRDLLRLSLVCRRWRR 33 (47)
T ss_dssp CS-HHHHHHHHTTS-HHHHHHHTTSSHHHHH
T ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 566 789999999999999999999544
No 84
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=54.51 E-value=3.6 Score=37.97 Aligned_cols=43 Identities=28% Similarity=0.187 Sum_probs=29.3
Q ss_pred HHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607 134 LNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 178 (250)
Q Consensus 134 i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~ 178 (250)
+.++++.|..||++.++++.--...+ -.++|++||+|....-.
T Consensus 247 ~~~~L~~l~vLDLRdNklke~Pde~c--lLrsL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 247 HLKHLNSLLVLDLRDNKLKEVPDEIC--LLRSLERLDLSNNDISS 289 (565)
T ss_pred HhcccccceeeeccccccccCchHHH--HhhhhhhhcccCCcccc
Confidence 45678899999998888765333322 24678888888776433
No 85
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=51.14 E-value=12 Score=19.67 Aligned_cols=11 Identities=36% Similarity=0.507 Sum_probs=5.8
Q ss_pred CCCcEEeeeCC
Q 025607 164 QNLEVLNISHC 174 (250)
Q Consensus 164 ~~L~~Ldls~C 174 (250)
++|++|+++++
T Consensus 2 ~~L~~L~L~~N 12 (26)
T smart00369 2 PNLRELDLSNN 12 (26)
T ss_pred CCCCEEECCCC
Confidence 34555555555
No 86
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=51.14 E-value=12 Score=19.67 Aligned_cols=11 Identities=36% Similarity=0.507 Sum_probs=5.8
Q ss_pred CCCcEEeeeCC
Q 025607 164 QNLEVLNISHC 174 (250)
Q Consensus 164 ~~L~~Ldls~C 174 (250)
++|++|+++++
T Consensus 2 ~~L~~L~L~~N 12 (26)
T smart00370 2 PNLRELDLSNN 12 (26)
T ss_pred CCCCEEECCCC
Confidence 34555555555
No 87
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=46.79 E-value=2.4 Score=31.53 Aligned_cols=98 Identities=16% Similarity=0.263 Sum_probs=46.1
Q ss_pred hhCCCCcEEEcCC-CCCCCHHHHHHHHhcCCCCCEEEecCC--CCCHHHHHHHHHhCCCCceeEecCC---CCHHHHHHH
Q 025607 61 ERCPQLKRLVMPA-WNRIKKTGICKAIRMWRDLESLTMPSI--ANPPYLMEEIAQNCRNFRELKIMGP---FDLLFASTL 134 (250)
Q Consensus 61 ~~c~~L~~L~L~~-c~~itd~~l~~~~~~c~~L~~L~Ls~c--~~~d~~l~~i~~~c~~L~~L~L~~~---i~d~~~~~i 134 (250)
..|++|+.+.++. ...+.+ ..+.+|++|+++.+... .+.+.+ -.+|++|+.+.+... +.+. .
T Consensus 9 ~~~~~l~~i~~~~~~~~I~~----~~F~~~~~l~~i~~~~~~~~i~~~~----F~~~~~l~~i~~~~~~~~i~~~----~ 76 (129)
T PF13306_consen 9 YNCSNLESITFPNTIKKIGE----NAFSNCTSLKSINFPNNLTSIGDNA----FSNCKSLESITFPNNLKSIGDN----A 76 (129)
T ss_dssp TT-TT--EEEETST--EE-T----TTTTT-TT-SEEEESSTTSCE-TTT----TTT-TT-EEEEETSTT-EE-TT----T
T ss_pred hCCCCCCEEEECCCeeEeCh----hhcccccccccccccccccccceee----eecccccccccccccccccccc----c
Confidence 4677889888863 222222 23567888999988764 222222 245778888888654 2322 1
Q ss_pred HhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeC
Q 025607 135 NMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISH 173 (250)
Q Consensus 135 ~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~ 173 (250)
...+++|+.+.+..+ ++.-+-. ...+| +|+.+.+..
T Consensus 77 F~~~~~l~~i~~~~~-~~~i~~~-~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 77 FSNCTNLKNIDIPSN-ITEIGSS-SFSNC-NLKEINIPS 112 (129)
T ss_dssp TTT-TTECEEEETTT--BEEHTT-TTTT--T--EEE-TT
T ss_pred ccccccccccccCcc-ccEEchh-hhcCC-CceEEEECC
Confidence 125788888888432 3321111 23456 788877664
No 88
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=46.37 E-value=6 Score=22.91 Aligned_cols=24 Identities=13% Similarity=-0.064 Sum_probs=20.7
Q ss_pred CcceeeecCCCchHHHHHHHHHHH
Q 025607 11 LEPYVYVHGHSDKQLTRILKISLS 34 (250)
Q Consensus 11 l~if~~l~~~~~~~l~~v~~~~~~ 34 (250)
.+||.|++..++..+..+|+.+..
T Consensus 7 ~~I~~~l~~~d~~~~~~vc~~~~~ 30 (41)
T smart00256 7 EEILSKLPPKDLLRLRKVSRRWRS 30 (41)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHH
Confidence 578999999999999999998544
No 89
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=45.32 E-value=11 Score=28.31 Aligned_cols=34 Identities=15% Similarity=0.296 Sum_probs=15.6
Q ss_pred HHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCC
Q 025607 58 YTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDL 92 (250)
Q Consensus 58 ~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L 92 (250)
.....|++++ .++.....-.-..+......|+.|
T Consensus 5 ~~F~~~~~l~-~~i~~~dts~vt~m~~mF~~~~~l 38 (120)
T PF03382_consen 5 SMFANCTNLN-IDISNWDTSNVTDMSYMFYGCTSL 38 (120)
T ss_pred HHHHhchhcc-CCccccccccceeHHHHhhcchhc
Confidence 3444555554 444433222222344555556555
No 90
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=45.28 E-value=0.83 Score=28.12 Aligned_cols=30 Identities=20% Similarity=0.150 Sum_probs=21.8
Q ss_pred CCCCcC----CcceeeecCCCchHHHHHHHHHHH
Q 025607 5 NYIKIP----LEPYVYVHGHSDKQLTRILKISLS 34 (250)
Q Consensus 5 ~~~~~p----l~if~~l~~~~~~~l~~v~~~~~~ 34 (250)
++.++| .+||+|++..+...++.||+.+..
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~ 35 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRS 35 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHH
Confidence 345667 789999999999999999998544
No 91
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=35.70 E-value=1.8e+02 Score=26.48 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCCceeEecCC----CCHHHHHHHHhc---CCCccEEEe
Q 025607 106 LMEEIAQNCRNFRELKIMGP----FDLLFASTLNMY---LPKLKVLSL 146 (250)
Q Consensus 106 ~l~~i~~~c~~L~~L~L~~~----i~d~~~~~i~~~---~~~L~~L~L 146 (250)
++..|+++ |.+++.-++|. ++|..+..|.+. .|.++.+.+
T Consensus 149 al~YIa~h-PeI~eVllSGGDPL~ls~~~L~~ll~~L~~IpHv~iiRi 195 (369)
T COG1509 149 ALDYIAAH-PEIREVLLSGGDPLSLSDKKLEWLLKRLRAIPHVKIIRI 195 (369)
T ss_pred HHHHHHcC-chhheEEecCCCccccCHHHHHHHHHHHhcCCceeEEEe
Confidence 44555544 55555555543 455555544433 334444444
No 92
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=32.98 E-value=34 Score=18.48 Aligned_cols=14 Identities=21% Similarity=0.342 Sum_probs=7.8
Q ss_pred CCccEEEeecCCCC
Q 025607 139 PKLKVLSLRCTTLN 152 (250)
Q Consensus 139 ~~L~~L~L~~~~it 152 (250)
.+|+.|+++.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 35566666555553
No 93
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=25.64 E-value=52 Score=17.90 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=11.4
Q ss_pred HHHhcCCCCcEEeeeC
Q 025607 158 LILDGLQNLEVLNISH 173 (250)
Q Consensus 158 ~i~~~c~~L~~Ldls~ 173 (250)
.++..+|+|+.||...
T Consensus 7 ~Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 7 KVIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHHCCccceecccc
Confidence 3556688888888654
No 94
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=22.18 E-value=2.3e+02 Score=18.37 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=6.6
Q ss_pred CCcEEEcCCCCCCCHH
Q 025607 65 QLKRLVMPAWNRIKKT 80 (250)
Q Consensus 65 ~L~~L~L~~c~~itd~ 80 (250)
+++.+.+.+...+|-+
T Consensus 12 ~~~~l~i~~~~~it~~ 27 (70)
T PF07735_consen 12 NLEKLSISSSNWITLD 27 (70)
T ss_pred CCCEEEEccCCcccHH
Confidence 3444444433334433
Done!