Query 025607
Match_columns 250
No_of_seqs 254 out of 1754
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 13:46:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025607.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025607hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 99.8 1E-18 3.6E-23 153.0 12.0 173 3-178 6-210 (336)
2 3ogk_B Coronatine-insensitive 99.7 9.8E-16 3.3E-20 143.7 18.3 145 32-178 336-501 (592)
3 3ogk_B Coronatine-insensitive 99.7 1.6E-15 5.5E-20 142.3 18.6 138 36-175 316-474 (592)
4 2p1m_B Transport inhibitor res 99.7 1.2E-15 4.3E-20 142.9 17.3 140 36-176 336-493 (594)
5 2p1m_B Transport inhibitor res 99.7 1.6E-15 5.6E-20 142.1 16.7 141 34-176 368-518 (594)
6 2ast_B S-phase kinase-associat 99.6 5.4E-15 1.9E-19 129.3 16.5 140 36-178 116-261 (336)
7 3e4g_A ATP synthase subunit S, 99.6 1E-15 3.5E-20 123.4 7.5 88 65-155 62-156 (176)
8 3e4g_A ATP synthase subunit S, 99.6 9.9E-16 3.4E-20 123.4 6.6 88 90-179 61-154 (176)
9 3un9_A NLR family member X1; l 99.5 5.2E-13 1.8E-17 119.8 15.7 138 36-175 99-250 (372)
10 1io0_A Tropomodulin; LRR prote 99.5 2.5E-12 8.7E-17 104.1 17.8 123 53-175 25-162 (185)
11 2ca6_A RAN GTPase-activating p 99.5 3.2E-12 1.1E-16 114.2 18.5 137 38-176 159-315 (386)
12 2ca6_A RAN GTPase-activating p 99.4 8.8E-13 3E-17 117.9 13.2 88 88-175 185-285 (386)
13 3un9_A NLR family member X1; l 99.4 1.3E-12 4.3E-17 117.2 13.5 140 35-176 69-223 (372)
14 1z7x_W Ribonuclease inhibitor; 99.4 1.6E-12 5.6E-17 118.1 13.3 138 36-175 26-181 (461)
15 1z7x_W Ribonuclease inhibitor; 99.4 1.1E-11 3.7E-16 112.7 16.2 136 37-174 226-380 (461)
16 1io0_A Tropomodulin; LRR prote 99.3 2.3E-10 7.9E-15 92.5 15.5 120 35-155 33-167 (185)
17 3goz_A Leucine-rich repeat-con 99.2 5.4E-11 1.8E-15 105.5 8.3 135 39-175 52-207 (362)
18 2je0_A Acidic leucine-rich nuc 99.1 1.2E-11 4.2E-16 95.8 2.7 135 32-172 11-148 (149)
19 2ra8_A Uncharacterized protein 99.1 1.2E-10 4.1E-15 104.0 8.1 135 37-178 171-320 (362)
20 2ell_A Acidic leucine-rich nuc 99.1 6.4E-12 2.2E-16 99.3 -0.3 140 32-178 18-161 (168)
21 3goz_A Leucine-rich repeat-con 99.1 2.3E-10 7.8E-15 101.5 8.5 137 37-175 79-236 (362)
22 2ra8_A Uncharacterized protein 99.0 1.6E-09 5.6E-14 96.7 10.9 136 37-175 192-341 (362)
23 2je0_A Acidic leucine-rich nuc 99.0 4.4E-11 1.5E-15 92.6 0.6 109 63-176 16-125 (149)
24 1pgv_A TMD-1, tropomodulin TMD 99.0 1.6E-08 5.6E-13 82.6 15.2 123 53-175 30-168 (197)
25 4ezg_A Putative uncharacterize 98.9 2.9E-10 1E-14 92.3 2.8 127 38-177 44-172 (197)
26 4ezg_A Putative uncharacterize 98.8 1E-09 3.4E-14 89.1 2.3 127 36-175 64-192 (197)
27 2ell_A Acidic leucine-rich nuc 98.8 1.7E-10 5.9E-15 91.0 -2.5 112 62-178 22-134 (168)
28 4fmz_A Internalin; leucine ric 98.8 5.3E-09 1.8E-13 91.5 6.8 127 36-177 197-324 (347)
29 1a9n_A U2A', U2A'; complex (nu 98.7 3E-09 1E-13 84.7 0.5 132 36-176 17-152 (176)
30 1pgv_A TMD-1, tropomodulin TMD 98.7 1.7E-07 5.7E-12 76.6 10.7 98 79-176 30-138 (197)
31 4fmz_A Internalin; leucine ric 98.6 5.5E-08 1.9E-12 85.0 7.8 142 36-207 175-317 (347)
32 1h6t_A Internalin B; cell adhe 98.6 4.5E-08 1.5E-12 84.3 5.5 80 86-174 108-188 (291)
33 4fcg_A Uncharacterized protein 98.6 1.9E-09 6.6E-14 94.5 -3.8 81 36-124 79-159 (328)
34 1wwl_A Monocyte differentiatio 98.5 2.3E-08 7.9E-13 86.7 2.7 135 37-177 148-287 (312)
35 1h6t_A Internalin B; cell adhe 98.5 5.5E-08 1.9E-12 83.7 4.6 126 36-178 88-214 (291)
36 4glp_A Monocyte differentiatio 98.5 4.1E-09 1.4E-13 91.3 -2.8 137 37-177 116-264 (310)
37 1h6u_A Internalin H; cell adhe 98.5 8.2E-08 2.8E-12 83.2 5.5 35 137-174 171-205 (308)
38 1h6u_A Internalin H; cell adhe 98.5 8.2E-08 2.8E-12 83.2 5.5 123 37-176 62-185 (308)
39 4glp_A Monocyte differentiatio 98.5 7.5E-09 2.6E-13 89.6 -1.2 137 36-178 143-286 (310)
40 3v47_A TOLL-like receptor 5B a 98.5 4E-09 1.4E-13 95.6 -3.3 136 38-177 30-167 (455)
41 2z7x_B TOLL-like receptor 1, v 98.5 3.5E-08 1.2E-12 91.0 2.5 134 36-177 322-457 (520)
42 1m9s_A Internalin B; cell inva 98.5 8E-08 2.7E-12 91.2 5.0 122 37-175 64-186 (605)
43 1a9n_A U2A', U2A'; complex (nu 98.5 9.7E-09 3.3E-13 81.7 -1.2 110 62-178 17-127 (176)
44 4fcg_A Uncharacterized protein 98.5 6.5E-09 2.2E-13 91.1 -2.9 133 37-179 103-244 (328)
45 1ds9_A Outer arm dynein; leuci 98.5 5.5E-09 1.9E-13 84.7 -3.2 107 61-176 45-152 (198)
46 1wwl_A Monocyte differentiatio 98.4 4.9E-08 1.7E-12 84.6 1.9 139 37-177 120-266 (312)
47 3rfs_A Internalin B, repeat mo 98.4 1.5E-08 5.1E-13 86.2 -1.5 38 137-175 155-192 (272)
48 1xeu_A Internalin C; cellular 98.4 7.2E-08 2.5E-12 81.8 2.4 121 38-176 41-162 (263)
49 1o6v_A Internalin A; bacterial 98.4 2E-07 6.9E-12 85.1 5.5 80 87-175 284-364 (466)
50 1m9s_A Internalin B; cell inva 98.4 1.4E-07 4.7E-12 89.6 4.4 127 36-179 85-212 (605)
51 1o6v_A Internalin A; bacterial 98.4 1.6E-07 5.3E-12 85.8 4.5 125 37-178 264-389 (466)
52 2z7x_B TOLL-like receptor 1, v 98.4 6.4E-08 2.2E-12 89.2 1.8 135 36-178 346-482 (520)
53 2o6s_A Variable lymphocyte rec 98.4 8.8E-09 3E-13 83.9 -3.6 133 38-177 28-161 (208)
54 3rfs_A Internalin B, repeat mo 98.4 3.9E-08 1.3E-12 83.5 0.2 129 38-177 41-170 (272)
55 1ds9_A Outer arm dynein; leuci 98.4 2.9E-08 9.8E-13 80.4 -0.8 123 37-170 47-180 (198)
56 1ozn_A Reticulon 4 receptor; N 98.4 3E-08 1E-12 84.5 -1.5 133 37-175 79-212 (285)
57 2z66_A Variable lymphocyte rec 98.3 3.6E-09 1.2E-13 91.1 -7.9 136 37-177 100-236 (306)
58 2z66_A Variable lymphocyte rec 98.3 1.3E-09 4.5E-14 93.9 -10.7 91 86-178 122-213 (306)
59 1xeu_A Internalin C; cellular 98.3 1E-07 3.5E-12 80.9 1.2 125 36-178 61-186 (263)
60 3m19_A Variable lymphocyte rec 98.3 2.2E-08 7.6E-13 84.0 -3.1 110 62-176 81-191 (251)
61 1ozn_A Reticulon 4 receptor; N 98.3 1.9E-08 6.3E-13 85.8 -3.7 134 37-176 55-189 (285)
62 4g8a_A TOLL-like receptor 4; l 98.3 5.2E-08 1.8E-12 91.1 -2.0 131 38-176 52-185 (635)
63 2z62_A TOLL-like receptor 4, v 98.3 2.6E-08 8.8E-13 84.5 -4.0 132 39-176 29-161 (276)
64 2z63_A TOLL-like receptor 4, v 98.3 2.9E-09 9.8E-14 99.1 -11.0 87 87-175 418-505 (570)
65 2z81_A CD282 antigen, TOLL-lik 98.2 1.8E-06 6E-11 79.9 7.8 65 37-102 333-399 (549)
66 3v47_A TOLL-like receptor 5B a 98.2 1.8E-07 6E-12 84.7 0.9 63 62-125 101-164 (455)
67 2z63_A TOLL-like receptor 4, v 98.2 1.1E-08 3.7E-13 95.1 -7.6 114 61-178 418-532 (570)
68 3o53_A Protein LRIM1, AGAP0063 98.2 6.3E-08 2.1E-12 84.1 -2.5 106 63-176 143-249 (317)
69 1ogq_A PGIP-2, polygalacturona 98.2 7.2E-09 2.4E-13 90.1 -8.6 133 38-176 50-186 (313)
70 1dce_A Protein (RAB geranylger 98.2 1.9E-07 6.3E-12 88.0 0.4 106 64-178 441-547 (567)
71 3a79_B TLR6, VLRB.59, TOLL-lik 98.2 1.1E-07 3.7E-12 88.8 -1.5 133 36-177 351-486 (562)
72 3vq2_A TLR4, TOLL-like recepto 98.2 6.8E-09 2.3E-13 97.5 -10.0 88 87-176 421-509 (606)
73 2z80_A TOLL-like receptor 2, v 98.2 1E-07 3.5E-12 83.8 -1.9 63 114-178 173-236 (353)
74 3vq2_A TLR4, TOLL-like recepto 98.2 2.3E-08 8E-13 93.8 -6.5 135 37-176 398-533 (606)
75 1xku_A Decorin; proteoglycan, 98.2 1.3E-07 4.3E-12 82.3 -1.6 130 38-176 121-252 (330)
76 2o6q_A Variable lymphocyte rec 98.2 6.5E-08 2.2E-12 82.0 -3.3 108 62-174 83-191 (270)
77 3o6n_A APL1; leucine-rich repe 98.2 1.7E-07 5.8E-12 83.4 -1.0 104 64-176 226-330 (390)
78 3t6q_A CD180 antigen; protein- 98.2 1.9E-08 6.5E-13 94.4 -7.8 38 137-175 474-511 (606)
79 3e6j_A Variable lymphocyte rec 98.1 9.6E-08 3.3E-12 79.2 -2.8 131 38-176 40-171 (229)
80 2o6q_A Variable lymphocyte rec 98.1 1.1E-07 3.8E-12 80.6 -2.4 134 37-177 84-218 (270)
81 3o53_A Protein LRIM1, AGAP0063 98.1 4.2E-08 1.5E-12 85.2 -5.3 133 37-178 143-276 (317)
82 3a79_B TLR6, VLRB.59, TOLL-lik 98.1 1.5E-07 5E-12 87.9 -2.3 134 36-177 375-510 (562)
83 3rgz_A Protein brassinosteroid 98.1 2.2E-07 7.5E-12 90.2 -1.3 62 37-100 125-188 (768)
84 2id5_A Lingo-1, leucine rich r 98.1 1.7E-07 5.6E-12 85.6 -2.1 84 37-125 55-138 (477)
85 4ecn_A Leucine-rich repeat pro 98.1 3.3E-07 1.1E-11 90.4 -0.1 131 37-175 490-630 (876)
86 2o6s_A Variable lymphocyte rec 98.1 1.4E-07 4.7E-12 76.7 -2.6 110 63-177 27-137 (208)
87 3rgz_A Protein brassinosteroid 98.1 7.5E-08 2.6E-12 93.5 -4.9 135 36-176 198-355 (768)
88 4ecn_A Leucine-rich repeat pro 98.1 5.7E-07 2E-11 88.7 1.3 133 37-177 447-608 (876)
89 3t6q_A CD180 antigen; protein- 98.1 9.6E-08 3.3E-12 89.6 -4.2 153 37-208 399-554 (606)
90 3m19_A Variable lymphocyte rec 98.1 2.3E-07 8E-12 77.7 -1.4 134 38-178 35-169 (251)
91 1xku_A Decorin; proteoglycan, 98.1 1.6E-07 5.5E-12 81.6 -2.5 127 37-176 99-228 (330)
92 3zyj_A Leucine-rich repeat-con 98.1 8.9E-08 3.1E-12 86.8 -4.5 130 37-174 135-265 (440)
93 4eco_A Uncharacterized protein 98.1 2.6E-07 9E-12 87.9 -1.6 111 37-152 205-343 (636)
94 2o6r_A Variable lymphocyte rec 98.1 1.5E-07 5.3E-12 74.5 -2.8 110 63-177 27-137 (177)
95 3zyi_A Leucine-rich repeat-con 98.1 1.3E-07 4.3E-12 86.1 -3.7 130 37-174 146-276 (452)
96 1p9a_G Platelet glycoprotein I 98.1 7.6E-08 2.6E-12 82.8 -5.0 109 62-176 75-184 (290)
97 3j0a_A TOLL-like receptor 5; m 98.1 1.5E-07 5.1E-12 92.4 -4.0 135 38-176 24-160 (844)
98 3oja_A Leucine-rich immune mol 98.1 1.2E-07 4.2E-12 87.5 -4.4 59 37-101 33-91 (487)
99 3e6j_A Variable lymphocyte rec 98.1 3E-07 1E-11 76.2 -1.6 109 63-177 39-148 (229)
100 2wfh_A SLIT homolog 2 protein 98.1 2.7E-07 9.3E-12 74.6 -1.9 109 63-177 30-139 (193)
101 2v9t_B SLIT homolog 2 protein 98.1 1.9E-07 6.5E-12 77.0 -2.9 133 38-177 32-165 (220)
102 1dce_A Protein (RAB geranylger 98.0 3.6E-07 1.2E-11 86.0 -1.3 36 137-175 484-519 (567)
103 3zyi_A Leucine-rich repeat-con 98.0 1.3E-07 4.5E-12 86.0 -4.2 132 37-176 170-302 (452)
104 2z81_A CD282 antigen, TOLL-lik 98.0 6.7E-06 2.3E-10 76.0 6.8 63 62-125 332-397 (549)
105 3bz5_A Internalin-J, INLJ; leu 98.0 1.4E-06 4.7E-11 79.8 2.1 120 37-177 41-161 (457)
106 2z80_A TOLL-like receptor 2, v 98.0 1.7E-06 5.8E-11 75.9 2.5 137 37-177 123-290 (353)
107 2id5_A Lingo-1, leucine rich r 98.0 3.6E-07 1.2E-11 83.4 -2.1 134 37-177 79-213 (477)
108 3oja_B Anopheles plasmodium-re 98.0 5.9E-07 2E-11 84.7 -0.7 35 137-175 322-356 (597)
109 3oja_A Leucine-rich immune mol 98.0 2.4E-07 8.3E-12 85.4 -3.6 61 63-125 119-179 (487)
110 2v70_A SLIT-2, SLIT homolog 2 98.0 3.4E-07 1.1E-11 75.5 -2.4 134 39-178 33-167 (220)
111 3zyj_A Leucine-rich repeat-con 98.0 1.4E-07 4.8E-12 85.5 -5.2 107 62-175 183-290 (440)
112 2xot_A Amphoterin-induced prot 98.0 1.1E-07 3.8E-12 84.1 -6.0 111 62-176 62-175 (361)
113 3o6n_A APL1; leucine-rich repe 98.0 9.8E-07 3.4E-11 78.4 -0.1 82 89-176 225-307 (390)
114 3bz5_A Internalin-J, INLJ; leu 98.0 1.8E-06 6.1E-11 79.0 1.4 98 63-176 147-245 (457)
115 4eco_A Uncharacterized protein 97.9 3.1E-06 1.1E-10 80.5 2.4 113 61-177 203-343 (636)
116 1p9a_G Platelet glycoprotein I 97.9 4.1E-07 1.4E-11 78.2 -3.4 133 36-177 75-208 (290)
117 1w8a_A SLIT protein; signaling 97.9 1.9E-07 6.4E-12 75.4 -5.3 110 64-177 29-139 (192)
118 2v70_A SLIT-2, SLIT homolog 2 97.9 3.1E-07 1.1E-11 75.7 -4.8 112 63-178 31-143 (220)
119 3oja_B Anopheles plasmodium-re 97.9 2E-06 7E-11 81.0 0.0 107 64-179 232-339 (597)
120 1ziw_A TOLL-like receptor 3; i 97.9 6E-07 2.1E-11 85.4 -3.7 87 87-175 501-595 (680)
121 3j0a_A TOLL-like receptor 5; m 97.8 6.2E-07 2.1E-11 88.0 -4.0 132 36-175 46-185 (844)
122 1ziw_A TOLL-like receptor 3; i 97.8 1.1E-06 3.7E-11 83.6 -2.5 136 37-177 479-622 (680)
123 2z62_A TOLL-like receptor 4, v 97.8 2.8E-06 9.7E-11 71.8 0.3 111 37-152 51-162 (276)
124 2ft3_A Biglycan; proteoglycan, 97.8 3.3E-07 1.1E-11 79.8 -5.8 37 137-175 239-275 (332)
125 3rw6_A Nuclear RNA export fact 97.8 1.9E-05 6.6E-10 67.3 5.4 84 86-171 166-258 (267)
126 2xwt_C Thyrotropin receptor; s 97.8 2.3E-07 7.8E-12 77.0 -7.1 13 87-99 77-89 (239)
127 3rw6_A Nuclear RNA export fact 97.8 2.2E-05 7.5E-10 67.0 5.0 89 55-146 161-258 (267)
128 2v9t_B SLIT homolog 2 protein 97.7 1E-06 3.5E-11 72.5 -3.5 111 64-179 32-143 (220)
129 4b8c_D Glucose-repressible alc 97.7 1.5E-06 5.2E-11 84.1 -2.9 107 61-176 221-328 (727)
130 3g06_A SSPH2 (leucine-rich rep 97.7 1.8E-05 6.1E-10 75.3 4.0 76 89-176 220-296 (622)
131 1ogq_A PGIP-2, polygalacturona 97.7 7.3E-07 2.5E-11 77.3 -6.1 40 86-125 145-184 (313)
132 4g8a_A TOLL-like receptor 4; l 97.6 8.6E-07 2.9E-11 82.8 -6.6 109 63-175 468-578 (635)
133 2xot_A Amphoterin-induced prot 97.6 1.7E-06 6E-11 76.4 -4.7 110 64-178 39-150 (361)
134 3cvr_A Invasion plasmid antige 97.5 1.6E-05 5.4E-10 74.9 -0.3 9 39-47 60-68 (571)
135 2o6r_A Variable lymphocyte rec 97.5 6.6E-06 2.3E-10 64.9 -2.5 109 38-152 28-137 (177)
136 3g06_A SSPH2 (leucine-rich rep 97.3 9.7E-05 3.3E-09 70.2 3.5 14 139-152 181-194 (622)
137 1jl5_A Outer protein YOPM; leu 97.3 4.9E-05 1.7E-09 69.4 1.1 16 86-101 149-164 (454)
138 3cvr_A Invasion plasmid antige 97.3 4.3E-05 1.5E-09 72.0 0.8 81 89-176 159-242 (571)
139 2ft3_A Biglycan; proteoglycan, 97.3 1E-05 3.4E-10 70.3 -3.5 109 64-177 193-307 (332)
140 2xwt_C Thyrotropin receptor; s 97.3 5E-06 1.7E-10 68.8 -5.2 108 64-178 31-144 (239)
141 4b8c_D Glucose-repressible alc 97.2 3.1E-05 1.1E-09 74.8 -1.4 107 36-154 222-331 (727)
142 1jl5_A Outer protein YOPM; leu 97.2 9.9E-05 3.4E-09 67.3 1.8 33 38-74 131-163 (454)
143 2r9u_A Variable lymphocyte rec 97.1 3.1E-05 1.1E-09 61.3 -1.9 85 90-177 33-118 (174)
144 2wfh_A SLIT homolog 2 protein 97.1 4.7E-05 1.6E-09 61.3 -1.1 85 90-178 31-116 (193)
145 3g39_A Variable lymphocyte rec 97.0 4.8E-05 1.6E-09 59.9 -1.9 84 90-176 30-114 (170)
146 1w8a_A SLIT protein; signaling 97.0 2.9E-05 9.9E-10 62.3 -3.5 87 90-178 29-116 (192)
147 3sb4_A Hypothetical leucine ri 97.0 0.00013 4.5E-09 63.2 0.2 46 51-100 213-260 (329)
148 3g39_A Variable lymphocyte rec 96.8 0.00014 4.6E-09 57.2 -0.7 86 63-152 29-115 (170)
149 2r9u_A Variable lymphocyte rec 96.8 0.00016 5.5E-09 57.1 -0.6 85 64-152 33-118 (174)
150 2ifg_A High affinity nerve gro 96.4 0.00023 7.8E-09 61.9 -2.3 62 62-125 29-90 (347)
151 2ifg_A High affinity nerve gro 95.5 0.0012 4E-08 57.4 -1.8 104 68-178 12-117 (347)
152 3sb4_A Hypothetical leucine ri 95.5 0.0015 5.3E-08 56.4 -1.1 99 65-175 203-308 (329)
153 4ay9_X Follicle-stimulating ho 94.5 0.00046 1.6E-08 60.4 -7.5 15 87-101 51-65 (350)
154 4fdw_A Leucine rich hypothetic 93.5 0.0043 1.5E-07 55.6 -3.2 13 137-149 269-281 (401)
155 4gt6_A Cell surface protein; l 92.8 0.017 5.7E-07 51.1 -0.5 13 87-99 308-320 (394)
156 4ay9_X Follicle-stimulating ho 92.6 0.0048 1.6E-07 53.7 -4.2 86 90-177 30-117 (350)
157 4gt6_A Cell surface protein; l 92.1 0.067 2.3E-06 47.2 2.5 98 61-174 262-367 (394)
158 1fs1_A SKP2 F-BOX, cyclin A/CD 90.8 0.024 8.3E-07 35.3 -1.3 40 4-43 7-52 (53)
159 4fdw_A Leucine rich hypothetic 86.0 0.15 5.1E-06 45.4 0.0 126 37-178 225-359 (401)
160 4h09_A Hypothetical leucine ri 76.9 0.28 9.6E-06 42.6 -1.6 75 86-172 259-341 (379)
161 4fs7_A Uncharacterized protein 75.7 0.28 9.7E-06 43.0 -2.0 75 87-173 294-375 (394)
162 4fs7_A Uncharacterized protein 74.4 0.47 1.6E-05 41.6 -0.8 94 61-169 294-393 (394)
163 4h09_A Hypothetical leucine ri 57.1 1.3 4.5E-05 38.3 -1.5 82 86-173 236-319 (379)
164 3l2o_B F-box only protein 4; s 43.6 0.59 2E-05 40.1 -5.7 37 7-43 6-48 (312)
165 3rfe_A Platelet glycoprotein I 42.4 6 0.0002 29.0 0.3 10 116-125 32-41 (130)
166 1nrp_R Receptor based peptide 34.3 11 0.00037 19.0 0.4 11 231-242 14-24 (26)
167 2li5_B Ubiquitin-like modifier 32.9 15 0.0005 19.7 0.8 11 236-246 24-34 (34)
168 1p22_A F-BOX/WD-repeat protein 32.2 3.9 0.00013 35.5 -2.5 31 13-43 26-58 (435)
169 2lz0_A Uncharacterized protein 31.8 19 0.00064 25.1 1.5 10 63-72 19-28 (100)
170 1nro_R Receptor based peptide 29.8 13 0.00045 18.9 0.3 12 231-243 14-25 (27)
171 3v7d_B Cell division control p 22.0 8.2 0.00028 33.5 -2.4 37 7-43 16-59 (464)
172 2l7x_A Envelope glycoprotein; 20.5 34 0.0012 22.4 1.0 21 209-229 28-48 (77)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.78 E-value=1e-18 Score=153.05 Aligned_cols=173 Identities=13% Similarity=0.121 Sum_probs=125.6
Q ss_pred CCCCCCcC----CcceeeecCCCchHHHHHHHHHHH--hcCCCccEEEecCCCCCCHHHHHHHHh---------------
Q 025607 3 ISNYIKIP----LEPYVYVHGHSDKQLTRILKISLS--LSRGSIRTLIFHFNLYVSDDQLTYTAE--------------- 61 (250)
Q Consensus 3 ~~~~~~~p----l~if~~l~~~~~~~l~~v~~~~~~--~~~~~l~~L~l~~~~~i~d~~L~~i~~--------------- 61 (250)
+.++.++| .+||+|++..++.+++.||+.+.. .+...|+.++++.+ .+++..+..+..
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~-~~~~~~~~~~~~~~l~~L~l~~n~l~~ 84 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGK-NLHPDVTGRLLSQGVIAFRCPRSFMDQ 84 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTC-BCCHHHHHHHHHTTCSEEECTTCEECS
T ss_pred cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccc-cCCHHHHHhhhhccceEEEcCCccccc
Confidence 45677888 789999999999999999998544 34566888888764 345555555411
Q ss_pred ------hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC--CCHHHHHH
Q 025607 62 ------RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP--FDLLFAST 133 (250)
Q Consensus 62 ------~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~--i~d~~~~~ 133 (250)
.+++|++|+|++| .+++.++..++.++++|++|++++|.+++..+..++. +++|++|++++| +++.++..
T Consensus 85 ~~~~~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~ 162 (336)
T 2ast_B 85 PLAEHFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQT 162 (336)
T ss_dssp CCCSCCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHH
T ss_pred cchhhccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHH
Confidence 2467777777766 4777777777777788888888777777777776665 777888888776 67766666
Q ss_pred HHhcCCCccEEEeecC-CCCHHHHHHHHhcCC-CCcEEeeeCCC-CcC
Q 025607 134 LNMYLPKLKVLSLRCT-TLNRDALILILDGLQ-NLEVLNISHCL-LID 178 (250)
Q Consensus 134 i~~~~~~L~~L~L~~~-~itd~~l~~i~~~c~-~L~~Ldls~C~-~i~ 178 (250)
+...+++|++|+++++ .+++.++..++..+| +|++|++++|. .++
T Consensus 163 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~ 210 (336)
T 2ast_B 163 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQ 210 (336)
T ss_dssp HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSC
T ss_pred HHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCC
Confidence 6667777888777666 777777777777777 77777777775 444
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.68 E-value=9.8e-16 Score=143.74 Aligned_cols=145 Identities=16% Similarity=0.205 Sum_probs=113.9
Q ss_pred HHHhcCCCccEEEecC----------CCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecC--
Q 025607 32 SLSLSRGSIRTLIFHF----------NLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPS-- 99 (250)
Q Consensus 32 ~~~~~~~~l~~L~l~~----------~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~-- 99 (250)
.+...+++++.|++.. +..+++..+..++..||+|++|++ +|+.+++.++..+...|++|++|++++
T Consensus 336 ~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 414 (592)
T 3ogk_B 336 VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLD 414 (592)
T ss_dssp HHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECS
T ss_pred HHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecC
Confidence 3444577888888873 678888888888888888888888 477888888888777788888888862
Q ss_pred -C-CCCH----HHHHHHHHhCCCCceeEecCC---CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEe
Q 025607 100 -I-ANPP----YLMEEIAQNCRNFRELKIMGP---FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLN 170 (250)
Q Consensus 100 -c-~~~d----~~l~~i~~~c~~L~~L~L~~~---i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ld 170 (250)
| .+++ ..+..+...|++|++|+++.| +++..+..++..+|+|+.|+++++.+++.++..++.+|++|++|+
T Consensus 415 ~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 494 (592)
T 3ogk_B 415 REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLE 494 (592)
T ss_dssp CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEE
T ss_pred CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeee
Confidence 3 5554 467777777888888888544 788888888877888888888777888888888888888888888
Q ss_pred eeCCCCcC
Q 025607 171 ISHCLLID 178 (250)
Q Consensus 171 ls~C~~i~ 178 (250)
+++|. ++
T Consensus 495 l~~n~-l~ 501 (592)
T 3ogk_B 495 MRGCC-FS 501 (592)
T ss_dssp EESCC-CB
T ss_pred ccCCC-Cc
Confidence 88887 55
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.68 E-value=1.6e-15 Score=142.26 Aligned_cols=138 Identities=17% Similarity=0.126 Sum_probs=79.0
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCC----------CCCCCHHHHHHHHhcCCCCCEEEecCCCCCHH
Q 025607 36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPA----------WNRIKKTGICKAIRMWRDLESLTMPSIANPPY 105 (250)
Q Consensus 36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~----------c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~ 105 (250)
.+++++.|.+. ..+++..+..++..|++|++|+|+. |+.+++.++..++..|++|++|+++.+.+++.
T Consensus 316 ~~~~L~~L~L~--~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~ 393 (592)
T 3ogk_B 316 KCPNLEVLETR--NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE 393 (592)
T ss_dssp TCTTCCEEEEE--GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHH
T ss_pred hCcCCCEEecc--CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHH
Confidence 45556666554 3455566666666666666666663 55666666655555666666666644456666
Q ss_pred HHHHHHHhCCCCceeEecC---C--CC----HHHHHHHHhcCCCccEEEeecC--CCCHHHHHHHHhcCCCCcEEeeeCC
Q 025607 106 LMEEIAQNCRNFRELKIMG---P--FD----LLFASTLNMYLPKLKVLSLRCT--TLNRDALILILDGLQNLEVLNISHC 174 (250)
Q Consensus 106 ~l~~i~~~c~~L~~L~L~~---~--i~----d~~~~~i~~~~~~L~~L~L~~~--~itd~~l~~i~~~c~~L~~Ldls~C 174 (250)
.+..++..||+|++|++++ + ++ ++++.++...+++|++|+++.+ .+++.++..+...+|+|++|++++|
T Consensus 394 ~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n 473 (592)
T 3ogk_B 394 SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV 473 (592)
T ss_dssp HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC
T ss_pred HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC
Confidence 6666666666666666641 1 33 2455555555666666666321 3566666666655666666666655
Q ss_pred C
Q 025607 175 L 175 (250)
Q Consensus 175 ~ 175 (250)
.
T Consensus 474 ~ 474 (592)
T 3ogk_B 474 G 474 (592)
T ss_dssp C
T ss_pred C
Confidence 4
No 4
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.67 E-value=1.2e-15 Score=142.93 Aligned_cols=140 Identities=16% Similarity=0.301 Sum_probs=98.2
Q ss_pred cCCCccEEEe--------cCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEec-----CC-C
Q 025607 36 SRGSIRTLIF--------HFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMP-----SI-A 101 (250)
Q Consensus 36 ~~~~l~~L~l--------~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls-----~c-~ 101 (250)
.+++++.|.+ ..+..+++..+..++..||+|+.|.+ +|+.+++.++..+...|++|++|+++ +| .
T Consensus 336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~ 414 (594)
T 2p1m_B 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY 414 (594)
T ss_dssp HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCT
T ss_pred hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCccc
Confidence 4566777766 33456677777777666777777744 36667777666666667777777777 34 5
Q ss_pred CC----HHHHHHHHHhCCCCceeEecCCCCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607 102 NP----PYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL 176 (250)
Q Consensus 102 ~~----d~~l~~i~~~c~~L~~L~L~~~i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~ 176 (250)
++ +..+..+...|++|++|++++.+++.++..+++.+++|+.|+++++.+++.++..++.+||+|++|++++|..
T Consensus 415 l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 415 LTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp TTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred ccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 66 6666677777777777777666777777777766777777777777777777777777778888888887765
No 5
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.66 E-value=1.6e-15 Score=142.11 Aligned_cols=141 Identities=16% Similarity=0.215 Sum_probs=130.3
Q ss_pred HhcCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcC-----CCCCCC----HHHHHHHHhcCCCCCEEEecCCCCCH
Q 025607 34 SLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMP-----AWNRIK----KTGICKAIRMWRDLESLTMPSIANPP 104 (250)
Q Consensus 34 ~~~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~-----~c~~it----d~~l~~~~~~c~~L~~L~Ls~c~~~d 104 (250)
...+++++.|.+. +..+++..+..++..+|+|+.|+|+ +|..++ +.++..++.+|++|++|++++ .+++
T Consensus 368 ~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~ 445 (594)
T 2p1m_B 368 SMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTD 445 (594)
T ss_dssp HHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCH
T ss_pred HHhchhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccH
Confidence 3457899999654 5679999999999999999999999 788999 899999999999999999988 8999
Q ss_pred HHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607 105 YLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL 176 (250)
Q Consensus 105 ~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~ 176 (250)
..+..++..+++|+.|+++++ +++.++..++..+++|++|+|++|.+++.++..++.++++|++|++++|..
T Consensus 446 ~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 446 KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 999999999999999999999 999999999889999999999889999999999999999999999999976
No 6
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=5.4e-15 Score=129.27 Aligned_cols=140 Identities=19% Similarity=0.173 Sum_probs=98.7
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCC-CCCHHHHHHHHHhC
Q 025607 36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQNC 114 (250)
Q Consensus 36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c-~~~d~~l~~i~~~c 114 (250)
.+++++.|+++++ .+++.....++. +++|++|+|++|..+++.++..++.++++|++|++++| .+++..+..+...+
T Consensus 116 ~~~~L~~L~L~~~-~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 193 (336)
T 2ast_B 116 QCSKLQNLSLEGL-RLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193 (336)
T ss_dssp TBCCCSEEECTTC-BCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred hCCCCCEEeCcCc-ccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence 4567777777765 467766666654 77777777777767777777777777777777777777 77777666666677
Q ss_pred C-CCceeEecCC---CCHHHHHHHHhcCCCccEEEeecCC-CCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607 115 R-NFRELKIMGP---FDLLFASTLNMYLPKLKVLSLRCTT-LNRDALILILDGLQNLEVLNISHCLLID 178 (250)
Q Consensus 115 ~-~L~~L~L~~~---i~d~~~~~i~~~~~~L~~L~L~~~~-itd~~l~~i~~~c~~L~~Ldls~C~~i~ 178 (250)
| +|++|+++++ +++..+..+...+|+|++|+++++. +++.++..+ ..+++|++|++++|..++
T Consensus 194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~ 261 (336)
T 2ast_B 194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDII 261 (336)
T ss_dssp CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTCC
T ss_pred ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCCCCC
Confidence 7 7777777775 5666666666677777777775555 776666644 456777777777776554
No 7
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.60 E-value=1e-15 Score=123.37 Aligned_cols=88 Identities=14% Similarity=0.084 Sum_probs=48.5
Q ss_pred CCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCC-CCCHHHHHHHHHh---CCCCceeEecCC--CCHHHHHHHHhcC
Q 025607 65 QLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQN---CRNFRELKIMGP--FDLLFASTLNMYL 138 (250)
Q Consensus 65 ~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c-~~~d~~l~~i~~~---c~~L~~L~L~~~--i~d~~~~~i~~~~ 138 (250)
+|+.|+|++|. +||.|+..+ .+|++|++|+|++| .+||.++..|+.. |++|++|++++| +||.++.+++ .+
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~ 138 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HF 138 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GC
T ss_pred eEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cC
Confidence 46666666664 666666543 45666666666666 4666666666542 445555555554 5555555554 34
Q ss_pred CCccEEEe-ecCCCCHHH
Q 025607 139 PKLKVLSL-RCTTLNRDA 155 (250)
Q Consensus 139 ~~L~~L~L-~~~~itd~~ 155 (250)
|+|++|++ .|..|||.+
T Consensus 139 ~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp TTCCEEEEESCTTCCCHH
T ss_pred CCCCEEECCCCCCCCchH
Confidence 55555555 444455544
No 8
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.60 E-value=9.9e-16 Score=123.45 Aligned_cols=88 Identities=8% Similarity=0.141 Sum_probs=80.6
Q ss_pred CCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC--CCHHHHHHHHhc---CCCccEEEe-ecCCCCHHHHHHHHhcC
Q 025607 90 RDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP--FDLLFASTLNMY---LPKLKVLSL-RCTTLNRDALILILDGL 163 (250)
Q Consensus 90 ~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~--i~d~~~~~i~~~---~~~L~~L~L-~~~~itd~~l~~i~~~c 163 (250)
.+|++||+++|.++|.++..+. .|++|++|+|++| +||.++..|++. +++|++|+| +|..|||.|+..+. .|
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GC
T ss_pred ceEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cC
Confidence 4799999999999999999984 7999999999999 999999999963 579999999 66789999999875 69
Q ss_pred CCCcEEeeeCCCCcCC
Q 025607 164 QNLEVLNISHCLLIDV 179 (250)
Q Consensus 164 ~~L~~Ldls~C~~i~~ 179 (250)
|+|++|+|++|.++++
T Consensus 139 ~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCCEEEEESCTTCCC
T ss_pred CCCCEEECCCCCCCCc
Confidence 9999999999999997
No 9
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.49 E-value=5.2e-13 Score=119.76 Aligned_cols=138 Identities=9% Similarity=0.013 Sum_probs=107.6
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHH----hcCCCCCEEEecCCCCCHHHHHHHH
Q 025607 36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAI----RMWRDLESLTMPSIANPPYLMEEIA 111 (250)
Q Consensus 36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~----~~c~~L~~L~Ls~c~~~d~~l~~i~ 111 (250)
.+..++.|+++.+ .+++..+..++...++|+.|+|++| .+++.+...+. ..+++|++|+|++|.+++.....++
T Consensus 99 ~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~ 176 (372)
T 3un9_A 99 GRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM 176 (372)
T ss_dssp CSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHH
T ss_pred CCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHH
Confidence 4467888888876 5788888888877788888888876 78887766554 2467889999998888887776665
Q ss_pred ---HhCCCCceeEecCC-CCHHHHHHHHh---cCCCccEEEeecCCCCHHHHHHHHh---cCCCCcEEeeeCCC
Q 025607 112 ---QNCRNFRELKIMGP-FDLLFASTLNM---YLPKLKVLSLRCTTLNRDALILILD---GLQNLEVLNISHCL 175 (250)
Q Consensus 112 ---~~c~~L~~L~L~~~-i~d~~~~~i~~---~~~~L~~L~L~~~~itd~~l~~i~~---~c~~L~~Ldls~C~ 175 (250)
..+++|++|+|+++ +++.++..++. ..++|+.|+|++|.+++.+...+.. .+++|++||+++|.
T Consensus 177 ~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 177 EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 45788999999888 88887766653 5678999999888899888776654 56889999999885
No 10
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.48 E-value=2.5e-12 Score=104.13 Aligned_cols=123 Identities=10% Similarity=0.069 Sum_probs=104.1
Q ss_pred HHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHH---HhcCCCCCEEEecCCCCCHHHHHHHHH---hCCCCceeEecCC-
Q 025607 53 DDQLTYTAERCPQLKRLVMPAWNRIKKTGICKA---IRMWRDLESLTMPSIANPPYLMEEIAQ---NCRNFRELKIMGP- 125 (250)
Q Consensus 53 d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~---~~~c~~L~~L~Ls~c~~~d~~l~~i~~---~c~~L~~L~L~~~- 125 (250)
++.+..+...+++|++|+|++|..++++++..+ +..++.|++|+|++|.+++++...++. ..++|++|+|+++
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 456667777899999999998768999876665 456889999999999999998777764 4689999999999
Q ss_pred CCHHHHHHHHhc---CCCccEEEe--ecCCCCHHHHHHHH---hcCCCCcEEeeeCCC
Q 025607 126 FDLLFASTLNMY---LPKLKVLSL--RCTTLNRDALILIL---DGLQNLEVLNISHCL 175 (250)
Q Consensus 126 i~d~~~~~i~~~---~~~L~~L~L--~~~~itd~~l~~i~---~~c~~L~~Ldls~C~ 175 (250)
++++++.++++. .+.|++|+| .++.++++|...+. ..++.|++|++++|.
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 999999888754 579999999 89999999966554 557999999999986
No 11
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.46 E-value=3.2e-12 Score=114.22 Aligned_cols=137 Identities=18% Similarity=0.179 Sum_probs=79.1
Q ss_pred CCccEEEecCCCCCCHHHHHHHH---hhCCCCcEEEcCCCCCCCHHHHHHHH----hcCCCCCEEEecCCCCCHHHHHHH
Q 025607 38 GSIRTLIFHFNLYVSDDQLTYTA---ERCPQLKRLVMPAWNRIKKTGICKAI----RMWRDLESLTMPSIANPPYLMEEI 110 (250)
Q Consensus 38 ~~l~~L~l~~~~~i~d~~L~~i~---~~c~~L~~L~L~~c~~itd~~l~~~~----~~c~~L~~L~Ls~c~~~d~~l~~i 110 (250)
+.++.|.++++. +++..+..++ ..+++|++|+|++| .+++.++..++ .++++|+.|+|++|.+++.+...+
T Consensus 159 ~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l 236 (386)
T 2ca6_A 159 PPLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 236 (386)
T ss_dssp CCCCEEECCSSC-CTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred CCCcEEECCCCC-CCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH
Confidence 556666665542 4444444332 25666666666655 56666544433 366667777776666665444333
Q ss_pred H---HhCCCCceeEecCC-CCHHHHHHHHhc-----CCCccEEEeecCCCCHHHHHHHH----hcCCCCcEEeeeCCCC
Q 025607 111 A---QNCRNFRELKIMGP-FDLLFASTLNMY-----LPKLKVLSLRCTTLNRDALILIL----DGLQNLEVLNISHCLL 176 (250)
Q Consensus 111 ~---~~c~~L~~L~L~~~-i~d~~~~~i~~~-----~~~L~~L~L~~~~itd~~l~~i~----~~c~~L~~Ldls~C~~ 176 (250)
+ ..+|+|++|+++++ +++.++..++.. +++|++|+|++|.+++.|+..+. .++|+|++|++++|..
T Consensus 237 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 2 44566777777666 666655554432 56677777766677766544433 3357777777776653
No 12
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.44 E-value=8.8e-13 Score=117.87 Aligned_cols=88 Identities=22% Similarity=0.260 Sum_probs=39.3
Q ss_pred cCCCCCEEEecCCCCCHHHHHHHHH----hCCCCceeEecCC-CCHHHHHHHH---hcCCCccEEEeecCCCCHHHHHHH
Q 025607 88 MWRDLESLTMPSIANPPYLMEEIAQ----NCRNFRELKIMGP-FDLLFASTLN---MYLPKLKVLSLRCTTLNRDALILI 159 (250)
Q Consensus 88 ~c~~L~~L~Ls~c~~~d~~l~~i~~----~c~~L~~L~L~~~-i~d~~~~~i~---~~~~~L~~L~L~~~~itd~~l~~i 159 (250)
.+++|++|++++|.+++..+..+.. .+++|++|+++++ +++.++..++ ..+++|++|+|++|.+++.+...+
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence 4444444444444444443333322 3444555555444 4443333332 234455555554455555444433
Q ss_pred Hhc-----CCCCcEEeeeCCC
Q 025607 160 LDG-----LQNLEVLNISHCL 175 (250)
Q Consensus 160 ~~~-----c~~L~~Ldls~C~ 175 (250)
... +++|++|++++|.
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSSC
T ss_pred HHHHhhccCCCeEEEECcCCc
Confidence 321 4555555555553
No 13
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.43 E-value=1.3e-12 Score=117.23 Aligned_cols=140 Identities=16% Similarity=0.126 Sum_probs=118.6
Q ss_pred hcCCCccEEEecCCCCCCHHHHHHHHhh----CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHH
Q 025607 35 LSRGSIRTLIFHFNLYVSDDQLTYTAER----CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEI 110 (250)
Q Consensus 35 ~~~~~l~~L~l~~~~~i~d~~L~~i~~~----c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i 110 (250)
...+.++.++++++. +++.....++.. +++|+.|+|++| .+++.++..++..+++|++|+|++|.+++.....+
T Consensus 69 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L 146 (372)
T 3un9_A 69 EVLSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL 146 (372)
T ss_dssp HHHTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH
T ss_pred HHHhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH
Confidence 345679999998764 888777776654 469999999987 79999999888888999999999999999988887
Q ss_pred HH----hCCCCceeEecCC-CCHHHHHHHH---hcCCCccEEEeecCCCCHHHHHHHH---hcCCCCcEEeeeCCCC
Q 025607 111 AQ----NCRNFRELKIMGP-FDLLFASTLN---MYLPKLKVLSLRCTTLNRDALILIL---DGLQNLEVLNISHCLL 176 (250)
Q Consensus 111 ~~----~c~~L~~L~L~~~-i~d~~~~~i~---~~~~~L~~L~L~~~~itd~~l~~i~---~~c~~L~~Ldls~C~~ 176 (250)
+. .+++|++|+|++| +++.++..++ ..+++|++|+|++|.+++.|+..+. ..+++|+.|++++|..
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence 64 4689999999999 8888877775 4689999999999999999987765 4578999999999953
No 14
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.41 E-value=1.6e-12 Score=118.11 Aligned_cols=138 Identities=11% Similarity=0.069 Sum_probs=98.7
Q ss_pred cCCCccEEEecCCCCCCHHHHHHH---HhhCCCCcEEEcCCCCCCCHHHHHHHHhcCC----CCCEEEecCCCCCHHHHH
Q 025607 36 SRGSIRTLIFHFNLYVSDDQLTYT---AERCPQLKRLVMPAWNRIKKTGICKAIRMWR----DLESLTMPSIANPPYLME 108 (250)
Q Consensus 36 ~~~~l~~L~l~~~~~i~d~~L~~i---~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~----~L~~L~Ls~c~~~d~~l~ 108 (250)
..++++.|+++++. +++.....+ ...+++|++|+|+++ .+++.++..+...++ +|++|++++|.+++.+..
T Consensus 26 ~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 26 LLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred hcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 35578888887764 676644443 345788888888865 577777777777666 688888888888765433
Q ss_pred HH---HHhCCCCceeEecCC-CCHHHHHHHHhc----CCCccEEEeecCCCCHHHHHHH---HhcCCCCcEEeeeCCC
Q 025607 109 EI---AQNCRNFRELKIMGP-FDLLFASTLNMY----LPKLKVLSLRCTTLNRDALILI---LDGLQNLEVLNISHCL 175 (250)
Q Consensus 109 ~i---~~~c~~L~~L~L~~~-i~d~~~~~i~~~----~~~L~~L~L~~~~itd~~l~~i---~~~c~~L~~Ldls~C~ 175 (250)
.+ ...+++|++|+++++ +++.++..++.. .++|++|+++++.+++.+...+ +..+++|++|++++|.
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 33 356788888888887 777777766653 4578888887788887664443 4568888888888876
No 15
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.38 E-value=1.1e-11 Score=112.68 Aligned_cols=136 Identities=18% Similarity=0.215 Sum_probs=65.9
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHh----hCCCCcEEEcCCCCCCCHHH---HHHHHhcCCCCCEEEecCCCCCHHHHHH
Q 025607 37 RGSIRTLIFHFNLYVSDDQLTYTAE----RCPQLKRLVMPAWNRIKKTG---ICKAIRMWRDLESLTMPSIANPPYLMEE 109 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d~~L~~i~~----~c~~L~~L~L~~c~~itd~~---l~~~~~~c~~L~~L~Ls~c~~~d~~l~~ 109 (250)
.+.++.|+++++ .+++..+..++. .+++|++|+|++| .+++.+ +...+.++++|++|++++|.+++..+..
T Consensus 226 ~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 303 (461)
T 1z7x_W 226 KASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303 (461)
T ss_dssp CTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred CCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH
Confidence 455666666554 355555544443 3556666666655 555554 3333445666666666666655554444
Q ss_pred HHHh----CCCCceeEecCC-CCHHHHHHHH---hcCCCccEEEeecCCCCHHHHHHHHhc----CCCCcEEeeeCC
Q 025607 110 IAQN----CRNFRELKIMGP-FDLLFASTLN---MYLPKLKVLSLRCTTLNRDALILILDG----LQNLEVLNISHC 174 (250)
Q Consensus 110 i~~~----c~~L~~L~L~~~-i~d~~~~~i~---~~~~~L~~L~L~~~~itd~~l~~i~~~----c~~L~~Ldls~C 174 (250)
++.. .++|++|++++| +++.+...++ ..+++|++|+++++.+++.++..+.+. +++|++|++++|
T Consensus 304 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 4432 134444444444 3332222221 234455555554445555444444332 334555555554
No 16
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.25 E-value=2.3e-10 Score=92.47 Aligned_cols=120 Identities=12% Similarity=0.051 Sum_probs=101.7
Q ss_pred hcCCCccEEEecCCCCCCHHHHHHHHh---hCCCCcEEEcCCCCCCCHHHHHHH---HhcCCCCCEEEecCCCCCHHHHH
Q 025607 35 LSRGSIRTLIFHFNLYVSDDQLTYTAE---RCPQLKRLVMPAWNRIKKTGICKA---IRMWRDLESLTMPSIANPPYLME 108 (250)
Q Consensus 35 ~~~~~l~~L~l~~~~~i~d~~L~~i~~---~c~~L~~L~L~~c~~itd~~l~~~---~~~c~~L~~L~Ls~c~~~d~~l~ 108 (250)
...+.++.|+++.+..++++....++. .+++|++|+|+++ .+++++...+ +...+.|++|+|++|.+++.+..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 357889999999876899998888875 4688999999987 6999876554 56778999999999999999988
Q ss_pred HHHH---hCCCCceeEe--cCC-CCHHHHHHHHh---cCCCccEEEeecCCCCHHH
Q 025607 109 EIAQ---NCRNFRELKI--MGP-FDLLFASTLNM---YLPKLKVLSLRCTTLNRDA 155 (250)
Q Consensus 109 ~i~~---~c~~L~~L~L--~~~-i~d~~~~~i~~---~~~~L~~L~L~~~~itd~~ 155 (250)
+++. .++.|++|++ +++ ++++++.++++ ..++|++|+|+.+.+++.|
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 8874 4679999999 777 99999877764 4689999999999999887
No 17
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.16 E-value=5.4e-11 Score=105.55 Aligned_cols=135 Identities=16% Similarity=0.159 Sum_probs=69.1
Q ss_pred CccEEEecCCCCCCHHH---HHHHHhh-CCCCcEEEcCCCCCCC---HHHHHHHHhcC-CCCCEEEecCCCCCHHHHHHH
Q 025607 39 SIRTLIFHFNLYVSDDQ---LTYTAER-CPQLKRLVMPAWNRIK---KTGICKAIRMW-RDLESLTMPSIANPPYLMEEI 110 (250)
Q Consensus 39 ~l~~L~l~~~~~i~d~~---L~~i~~~-c~~L~~L~L~~c~~it---d~~l~~~~~~c-~~L~~L~Ls~c~~~d~~l~~i 110 (250)
.++.|+++++ .+++.. +...... +++|++|+|++|. ++ ...+...+..+ ++|++|++++|.+++.....+
T Consensus 52 ~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 129 (362)
T 3goz_A 52 SVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEF 129 (362)
T ss_dssp TCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred ceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHH
Confidence 6666766655 333322 2222222 3667777776653 33 23344444555 566666666665555444444
Q ss_pred HHh----CCCCceeEecCC-CCHHHHHHHH---hcCC-CccEEEeecCCCCHHHHHH---HHhcC-CCCcEEeeeCCC
Q 025607 111 AQN----CRNFRELKIMGP-FDLLFASTLN---MYLP-KLKVLSLRCTTLNRDALIL---ILDGL-QNLEVLNISHCL 175 (250)
Q Consensus 111 ~~~----c~~L~~L~L~~~-i~d~~~~~i~---~~~~-~L~~L~L~~~~itd~~l~~---i~~~c-~~L~~Ldls~C~ 175 (250)
+.. +++|++|+++++ +++.++..++ ...+ +|++|+|++|.+++.+... .+..+ ++|++||+++|.
T Consensus 130 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 207 (362)
T 3goz_A 130 KQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL 207 (362)
T ss_dssp HHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence 332 456666666666 5443333332 1233 6666666555555444332 23334 366666666664
No 18
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.14 E-value=1.2e-11 Score=95.76 Aligned_cols=135 Identities=16% Similarity=0.139 Sum_probs=86.4
Q ss_pred HHHhcCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHH
Q 025607 32 SLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIA 111 (250)
Q Consensus 32 ~~~~~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~ 111 (250)
......+.++.|.++++. +++..+......+++|+.|+++++ .++.. ..+..+++|+.|++++|.++.. +....
T Consensus 11 ~~~~~~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~i~~~-~~~~~ 84 (149)
T 2je0_A 11 LRNRTPSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNRVSGG-LEVLA 84 (149)
T ss_dssp HTTCCGGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSCCCSC-THHHH
T ss_pred HhcCCCccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCcccch-HHHHh
Confidence 344455678888877653 342222233356788888888876 44432 4456778888888888876653 33444
Q ss_pred HhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHH--HHHHhcCCCCcEEeee
Q 025607 112 QNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDAL--ILILDGLQNLEVLNIS 172 (250)
Q Consensus 112 ~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l--~~i~~~c~~L~~Ldls 172 (250)
..+++|++|+++++ +++-........+++|++|++++|.+++..- ...+..+|+|++||++
T Consensus 85 ~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 85 EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 55788888888877 6653322223478888888887777765432 2456678888888776
No 19
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.11 E-value=1.2e-10 Score=104.02 Aligned_cols=135 Identities=16% Similarity=0.175 Sum_probs=94.4
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHh-cCCCCCEEEecCC---CCCHHHH---HH
Q 025607 37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIR-MWRDLESLTMPSI---ANPPYLM---EE 109 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~-~c~~L~~L~Ls~c---~~~d~~l---~~ 109 (250)
.++|++|.+.++..+. +..+ ..++|++|+|..| .++++++..+.. .+|+|++|+|+.+ ...+..+ ..
T Consensus 171 ~P~L~~L~L~g~~~l~---l~~~--~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNLS---IGKK--PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp CTTCCEEEEECCBTCB---CCSC--BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred CCCCcEEEEeCCCCce---eccc--cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 4566777665542221 1111 2567777777644 678888877764 7899999998642 1122212 11
Q ss_pred H--HHhCCCCceeEecCC-CCHHHHHHHHh--cCCCccEEEeecCCCCHHHHHHHHhc---CCCCcEEeeeCCCCcC
Q 025607 110 I--AQNCRNFRELKIMGP-FDLLFASTLNM--YLPKLKVLSLRCTTLNRDALILILDG---LQNLEVLNISHCLLID 178 (250)
Q Consensus 110 i--~~~c~~L~~L~L~~~-i~d~~~~~i~~--~~~~L~~L~L~~~~itd~~l~~i~~~---c~~L~~Ldls~C~~i~ 178 (250)
+ +..+|+|+.|++..| +++.+..+++. .+|+|++|+|+++.+++.|..++..+ +++|+.|++++|. ++
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~ 320 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY-LS 320 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB-CC
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc-CC
Confidence 1 135899999999888 88877777774 57899999999999999998888744 7999999999885 55
No 20
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.11 E-value=6.4e-12 Score=99.34 Aligned_cols=140 Identities=14% Similarity=0.084 Sum_probs=102.7
Q ss_pred HHHhcCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHH
Q 025607 32 SLSLSRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIA 111 (250)
Q Consensus 32 ~~~~~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~ 111 (250)
......+.++.|+++++. +++..+......+++|+.|+|+++. ++.. ..+..+++|++|++++|.++.. +..+.
T Consensus 18 ~~~~~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~l~~~-~~~~~ 91 (168)
T 2ell_A 18 LRNRTPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENRIFGG-LDMLA 91 (168)
T ss_dssp HTTSCTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCCCCSC-CCHHH
T ss_pred hccCCcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCcCchH-HHHHH
Confidence 344556889999998764 4433333334568999999999874 5543 4567899999999999977654 34555
Q ss_pred HhCCCCceeEecCC-CCHH-HHHHHHhcCCCccEEEeecCCCCHHHH--HHHHhcCCCCcEEeeeCCCCcC
Q 025607 112 QNCRNFRELKIMGP-FDLL-FASTLNMYLPKLKVLSLRCTTLNRDAL--ILILDGLQNLEVLNISHCLLID 178 (250)
Q Consensus 112 ~~c~~L~~L~L~~~-i~d~-~~~~i~~~~~~L~~L~L~~~~itd~~l--~~i~~~c~~L~~Ldls~C~~i~ 178 (250)
..+++|+.|+++++ +++- .+..+ ..+++|++|+++++.++.... ...+..+|+|++|++++|....
T Consensus 92 ~~l~~L~~L~Ls~N~l~~~~~~~~l-~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 92 EKLPNLTHLNLSGNKLKDISTLEPL-KKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp HHCTTCCEEECBSSSCCSSGGGGGG-SSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred hhCCCCCEEeccCCccCcchhHHHH-hcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 66899999999998 6552 22333 378999999998888875432 2467789999999999997654
No 21
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.08 E-value=2.3e-10 Score=101.47 Aligned_cols=137 Identities=15% Similarity=0.098 Sum_probs=67.7
Q ss_pred CCCccEEEecCCCCCCH---HHHHHHHhhC-CCCcEEEcCCCCCCCHHH---HHHHHhc-CCCCCEEEecCCCCCHHHHH
Q 025607 37 RGSIRTLIFHFNLYVSD---DQLTYTAERC-PQLKRLVMPAWNRIKKTG---ICKAIRM-WRDLESLTMPSIANPPYLME 108 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d---~~L~~i~~~c-~~L~~L~L~~c~~itd~~---l~~~~~~-c~~L~~L~Ls~c~~~d~~l~ 108 (250)
.+.++.|+++++. +++ ..+......+ ++|++|+|+++. +++.+ +...+.. +++|++|++++|.+++....
T Consensus 79 ~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 156 (362)
T 3goz_A 79 PANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD 156 (362)
T ss_dssp CTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH
T ss_pred CCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH
Confidence 3667777666554 332 2233322333 566777766552 43332 3333333 34666666666655543333
Q ss_pred HHH---HhCC-CCceeEecCC-CCHHHHHHHH---hcC-CCccEEEeecCCCCHHHHHHHHh---c-CCCCcEEeeeCCC
Q 025607 109 EIA---QNCR-NFRELKIMGP-FDLLFASTLN---MYL-PKLKVLSLRCTTLNRDALILILD---G-LQNLEVLNISHCL 175 (250)
Q Consensus 109 ~i~---~~c~-~L~~L~L~~~-i~d~~~~~i~---~~~-~~L~~L~L~~~~itd~~l~~i~~---~-c~~L~~Ldls~C~ 175 (250)
.++ ...+ +|++|+++++ +++.+...++ ..+ ++|++|+|++|.+++.+...+.. . +++|++||+++|.
T Consensus 157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 157 ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 332 2233 6666666665 4333222222 234 36666666666666544443322 2 3466666666664
No 22
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.01 E-value=1.6e-09 Score=96.67 Aligned_cols=136 Identities=13% Similarity=0.099 Sum_probs=106.0
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHh-hCCCCcEEEcCCCCC--CCH---HHHHHHH--hcCCCCCEEEecCCCCCHHHHH
Q 025607 37 RGSIRTLIFHFNLYVSDDQLTYTAE-RCPQLKRLVMPAWNR--IKK---TGICKAI--RMWRDLESLTMPSIANPPYLME 108 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d~~L~~i~~-~c~~L~~L~L~~c~~--itd---~~l~~~~--~~c~~L~~L~Ls~c~~~d~~l~ 108 (250)
.++|+.|.+..+ .++++.+..++. .+|+|++|+|+.+.+ ..+ .++..++ ..+|+|+.|++.+|.+++....
T Consensus 192 ~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~ 270 (362)
T 2ra8_A 192 RPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE 270 (362)
T ss_dssp CTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH
T ss_pred CCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH
Confidence 468999998754 589999999885 689999999964311 111 1222333 3589999999999999888777
Q ss_pred HHHH--hCCCCceeEecCC-CCHHHHHHHHh---cCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607 109 EIAQ--NCRNFRELKIMGP-FDLLFASTLNM---YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 175 (250)
Q Consensus 109 ~i~~--~c~~L~~L~L~~~-i~d~~~~~i~~---~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~ 175 (250)
.++. .+|+|++|+|+.+ +++.++.+++. .+++|+.|+|+.|.++++++.++.+.+ ...++++.-.
T Consensus 271 ~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 271 MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 7765 5789999999988 99999888874 479999999988899999999988755 3557777654
No 23
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.00 E-value=4.4e-11 Score=92.57 Aligned_cols=109 Identities=18% Similarity=0.213 Sum_probs=85.0
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCc
Q 025607 63 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL 141 (250)
Q Consensus 63 c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L 141 (250)
.++|+.|++++| .+++..+...+..+++|+.|++++|.+++- .....+++|+.|+++++ ++.. +......+++|
T Consensus 16 ~~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L 90 (149)
T 2je0_A 16 PSDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNL 90 (149)
T ss_dssp GGGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTC
T ss_pred CccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccch-HHHHhhhCCCC
Confidence 477999999987 465444445567899999999999977654 33345799999999998 6543 33344479999
Q ss_pred cEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607 142 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL 176 (250)
Q Consensus 142 ~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~ 176 (250)
++|+++++.+++......+.++++|++|++++|..
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence 99999999999865445577899999999999964
No 24
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.98 E-value=1.6e-08 Score=82.57 Aligned_cols=123 Identities=12% Similarity=0.110 Sum_probs=100.1
Q ss_pred HHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHH---HhcCCCCCEEEecCCCCCHHHHHHHH---HhCCCCceeEecCC-
Q 025607 53 DDQLTYTAERCPQLKRLVMPAWNRIKKTGICKA---IRMWRDLESLTMPSIANPPYLMEEIA---QNCRNFRELKIMGP- 125 (250)
Q Consensus 53 d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~---~~~c~~L~~L~Ls~c~~~d~~l~~i~---~~c~~L~~L~L~~~- 125 (250)
++.+..+....+.|++|+|++.+.+.++|...+ ++.-..|++|+|++|.++|.+..+|+ +.-+.|++|+|+.+
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 567777777889999999987668999886665 45567899999999999999877776 34588999999998
Q ss_pred CCHHHHHHHHhcC---CCccEEEeec--C-CCCHHHHHH---HHhcCCCCcEEeeeCCC
Q 025607 126 FDLLFASTLNMYL---PKLKVLSLRC--T-TLNRDALIL---ILDGLQNLEVLNISHCL 175 (250)
Q Consensus 126 i~d~~~~~i~~~~---~~L~~L~L~~--~-~itd~~l~~---i~~~c~~L~~Ldls~C~ 175 (250)
++++++.+|++.+ +.|++|+|++ + .+.+++-.+ .++.-+.|+.|+++++.
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 9999999998754 4899999953 3 789987444 45667999999998653
No 25
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.93 E-value=2.9e-10 Score=92.26 Aligned_cols=127 Identities=20% Similarity=0.199 Sum_probs=93.8
Q ss_pred CCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCC
Q 025607 38 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF 117 (250)
Q Consensus 38 ~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L 117 (250)
+.++.++++++. +++ +.. ...+++|++|++++| .+++- ..+..+++|++|++++|.+++..+..++ .+++|
T Consensus 44 ~~L~~L~l~~n~-i~~--l~~-l~~l~~L~~L~l~~n-~~~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L 114 (197)
T 4ezg_A 44 NSLTYITLANIN-VTD--LTG-IEYAHNIKDLTINNI-HATNY---NPISGLSNLERLRIMGKDVTSDKIPNLS-GLTSL 114 (197)
T ss_dssp HTCCEEEEESSC-CSC--CTT-GGGCTTCSEEEEESC-CCSCC---GGGTTCTTCCEEEEECTTCBGGGSCCCT-TCTTC
T ss_pred CCccEEeccCCC-ccC--hHH-HhcCCCCCEEEccCC-CCCcc---hhhhcCCCCCEEEeECCccCcccChhhc-CCCCC
Confidence 467888887653 332 111 356899999999988 55432 2467789999999999988765555554 47999
Q ss_pred ceeEecCC-CCHHHHHHHHhcCCCccEEEeecCC-CCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607 118 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTT-LNRDALILILDGLQNLEVLNISHCLLI 177 (250)
Q Consensus 118 ~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~-itd~~l~~i~~~c~~L~~Ldls~C~~i 177 (250)
++|+++++ +++.....+. .+++|++|+++.+. +++-. .+.++++|++|++++|..-
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp CEEECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCC
T ss_pred CEEEecCCccCcHhHHHHh-hCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCc
Confidence 99999988 7776666665 78999999997776 77642 3677899999999998643
No 26
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.82 E-value=1e-09 Score=89.07 Aligned_cols=127 Identities=14% Similarity=0.138 Sum_probs=96.0
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCC
Q 025607 36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR 115 (250)
Q Consensus 36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~ 115 (250)
..++++.|.++++ .+++- ..+ ..+++|++|+++++ .+++.... .+.++++|+.|++++|.+++..+..++ .++
T Consensus 64 ~l~~L~~L~l~~n-~~~~~--~~l-~~l~~L~~L~l~~n-~l~~~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~~l~-~l~ 136 (197)
T 4ezg_A 64 YAHNIKDLTINNI-HATNY--NPI-SGLSNLERLRIMGK-DVTSDKIP-NLSGLTSLTLLDISHSAHDDSILTKIN-TLP 136 (197)
T ss_dssp GCTTCSEEEEESC-CCSCC--GGG-TTCTTCCEEEEECT-TCBGGGSC-CCTTCTTCCEEECCSSBCBGGGHHHHT-TCS
T ss_pred cCCCCCEEEccCC-CCCcc--hhh-hcCCCCCEEEeECC-ccCcccCh-hhcCCCCCCEEEecCCccCcHhHHHHh-hCC
Confidence 3568999999877 33322 223 35899999999986 56553332 356899999999999999887776665 579
Q ss_pred CCceeEecCC--CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607 116 NFRELKIMGP--FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 175 (250)
Q Consensus 116 ~L~~L~L~~~--i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~ 175 (250)
+|++|+++++ +++- ..+ ..+++|+.|+++++.+++-. .+.++|+|++|++++..
T Consensus 137 ~L~~L~L~~n~~i~~~--~~l-~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 137 KVNSIDLSYNGAITDI--MPL-KTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp SCCEEECCSCTBCCCC--GGG-GGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECBC-
T ss_pred CCCEEEccCCCCcccc--Hhh-cCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeCcc
Confidence 9999999988 4442 233 47999999999888988732 45789999999999875
No 27
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.81 E-value=1.7e-10 Score=91.01 Aligned_cols=112 Identities=17% Similarity=0.182 Sum_probs=84.4
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCC
Q 025607 62 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK 140 (250)
Q Consensus 62 ~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~ 140 (250)
..++|+.|++++| .+++..+...+..+++|+.|++++|.+++- .....+++|++|+++++ ++.. +..+...+++
T Consensus 22 ~~~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~ 96 (168)
T 2ell_A 22 TPAAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGG-LDMLAEKLPN 96 (168)
T ss_dssp CTTSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTT
T ss_pred CcccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchH-HHHHHhhCCC
Confidence 3478999999987 465444444567889999999999977654 23345799999999988 5542 3344447999
Q ss_pred ccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607 141 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 178 (250)
Q Consensus 141 L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~ 178 (250)
|++|+++++.+++-.....+..+++|++|++++|..-.
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~ 134 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN 134 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT
T ss_pred CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc
Confidence 99999999999874322345679999999999996543
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.81 E-value=5.3e-09 Score=91.48 Aligned_cols=127 Identities=17% Similarity=0.159 Sum_probs=90.4
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCC
Q 025607 36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR 115 (250)
Q Consensus 36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~ 115 (250)
..+.++.+.++++....... ...+++|+.|++++|. +++... +..+++|++|++++|.+++- . ....++
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~l~~~--~-~~~~l~ 265 (347)
T 4fmz_A 197 SLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNK-ITDLSP---LANLSQLTWLEIGTNQISDI--N-AVKDLT 265 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSCCCCC--G-GGTTCT
T ss_pred CCCccceeecccCCCCCCch----hhcCCcCCEEEccCCc-cCCCcc---hhcCCCCCEEECCCCccCCC--h-hHhcCC
Confidence 45678888887654322222 3578899999999874 433211 67889999999999976652 2 234678
Q ss_pred CCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607 116 NFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 177 (250)
Q Consensus 116 ~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i 177 (250)
+|++|+++++ +++- .. ...+++|+.|+++++.+++..... +.++++|++|++++|...
T Consensus 266 ~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 266 KLKMLNVGSNQISDI--SV-LNNLSQLNSLFLNNNQLGNEDMEV-IGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp TCCEEECCSSCCCCC--GG-GGGCTTCSEEECCSSCCCGGGHHH-HHTCTTCSEEECCSSSCC
T ss_pred CcCEEEccCCccCCC--hh-hcCCCCCCEEECcCCcCCCcChhH-hhccccCCEEEccCCccc
Confidence 9999999888 5542 22 347899999999888888766544 457899999999999743
No 29
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.67 E-value=3e-09 Score=84.68 Aligned_cols=132 Identities=15% Similarity=0.141 Sum_probs=92.3
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCC
Q 025607 36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR 115 (250)
Q Consensus 36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~ 115 (250)
.+..++.|.++++. ++. +..+....|+|+.|+|+++ .++. + ..+.++++|+.|++++|.++.-. ..+...++
T Consensus 17 ~~~~L~~L~l~~n~-l~~--i~~~~~~~~~L~~L~Ls~N-~l~~--~-~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~ 88 (176)
T 1a9n_A 17 NAVRDRELDLRGYK-IPV--IENLGATLDQFDAIDFSDN-EIRK--L-DGFPLLRRLKTLLVNNNRICRIG-EGLDQALP 88 (176)
T ss_dssp CTTSCEEEECTTSC-CCS--CCCGGGGTTCCSEEECCSS-CCCE--E-CCCCCCSSCCEEECCSSCCCEEC-SCHHHHCT
T ss_pred CcCCceEEEeeCCC-Cch--hHHhhhcCCCCCEEECCCC-CCCc--c-cccccCCCCCEEECCCCcccccC-cchhhcCC
Confidence 45678888888764 332 2345556679999999987 4553 2 34678899999999999776321 12335689
Q ss_pred CCceeEecCC-CCHHH-HHHHHhcCCCccEEEeecCCCCHHH--HHHHHhcCCCCcEEeeeCCCC
Q 025607 116 NFRELKIMGP-FDLLF-ASTLNMYLPKLKVLSLRCTTLNRDA--LILILDGLQNLEVLNISHCLL 176 (250)
Q Consensus 116 ~L~~L~L~~~-i~d~~-~~~i~~~~~~L~~L~L~~~~itd~~--l~~i~~~c~~L~~Ldls~C~~ 176 (250)
+|+.|+++++ +++-. +..+. .+++|+.|++++|.++... -..++..+|+|+.||++++..
T Consensus 89 ~L~~L~L~~N~i~~~~~~~~l~-~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 89 DLTELILTNNSLVELGDLDPLA-SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp TCCEEECCSCCCCCGGGGGGGG-GCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCEEECCCCcCCcchhhHhhh-cCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 9999999988 64321 22333 7899999999888776421 123567899999999998753
No 30
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.66 E-value=1.7e-07 Score=76.56 Aligned_cols=98 Identities=13% Similarity=0.152 Sum_probs=84.1
Q ss_pred HHHHHHHHhcCCCCCEEEecCC-CCCHHHHHHHHHh---CCCCceeEecCC-CCHHHHHHHHh---cCCCccEEEeecCC
Q 025607 79 KTGICKAIRMWRDLESLTMPSI-ANPPYLMEEIAQN---CRNFRELKIMGP-FDLLFASTLNM---YLPKLKVLSLRCTT 150 (250)
Q Consensus 79 d~~l~~~~~~c~~L~~L~Ls~c-~~~d~~l~~i~~~---c~~L~~L~L~~~-i~d~~~~~i~~---~~~~L~~L~L~~~~ 150 (250)
++.+..+..+-+.|++|+|+++ .+++++..+++.. -+.|++|+|+++ ++|.++.+|++ .-+.|++|+|..|.
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 4568888888999999999996 9999988877643 478999999999 99999888885 45799999999999
Q ss_pred CCHHHHHHHHhcC---CCCcEEeeeCCCC
Q 025607 151 LNRDALILILDGL---QNLEVLNISHCLL 176 (250)
Q Consensus 151 itd~~l~~i~~~c---~~L~~Ldls~C~~ 176 (250)
|+++|..+|++.+ +.|++|+|+++.+
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~ 138 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQRQ 138 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCCcC
Confidence 9999999998764 6799999998753
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.64 E-value=5.5e-08 Score=84.96 Aligned_cols=142 Identities=15% Similarity=0.145 Sum_probs=101.1
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCC
Q 025607 36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR 115 (250)
Q Consensus 36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~ 115 (250)
..++++.++++++..-.-.. ...+++|+.|+++++ .+++... +..+++|++|++++|.+++... ...++
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n-~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~---~~~l~ 243 (347)
T 4fmz_A 175 NLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVN-QITDITP---VANMTRLNSLKIGNNKITDLSP---LANLS 243 (347)
T ss_dssp GCTTCSEEECTTSCCCCCGG----GGGCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSSCCCCCGG---GTTCT
T ss_pred cCCCCCEEEccCCccccccc----ccCCCccceeecccC-CCCCCch---hhcCCcCCEEEccCCccCCCcc---hhcCC
Confidence 46789999988765332222 357899999999977 4443221 6789999999999997654332 45789
Q ss_pred CCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCCCCCCChhHHHhhhhH
Q 025607 116 NFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLDR 194 (250)
Q Consensus 116 ~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~~~~~~~~~~i~~~~~ 194 (250)
+|++|+++++ +++- ..+ ..+++|++|+++++.+++- .....+++|++|++++|...+ ...
T Consensus 244 ~L~~L~l~~n~l~~~--~~~-~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~-------------~~~ 304 (347)
T 4fmz_A 244 QLTWLEIGTNQISDI--NAV-KDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGN-------------EDM 304 (347)
T ss_dssp TCCEEECCSSCCCCC--GGG-TTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCG-------------GGH
T ss_pred CCCEEECCCCccCCC--hhH-hcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCC-------------cCh
Confidence 9999999988 5542 223 4789999999988888874 235779999999999996432 234
Q ss_pred HHHHHHHhhhhhh
Q 025607 195 TILQKAARLRKFL 207 (250)
Q Consensus 195 ~i~~~~~~L~~l~ 207 (250)
..+...++|+.+.
T Consensus 305 ~~l~~l~~L~~L~ 317 (347)
T 4fmz_A 305 EVIGGLTNLTTLF 317 (347)
T ss_dssp HHHHTCTTCSEEE
T ss_pred hHhhccccCCEEE
Confidence 4555566777754
No 32
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.58 E-value=4.5e-08 Score=84.25 Aligned_cols=80 Identities=21% Similarity=0.245 Sum_probs=36.9
Q ss_pred HhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCC
Q 025607 86 IRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQ 164 (250)
Q Consensus 86 ~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~ 164 (250)
+..+++|++|++++|.+++- .. ...+++|+.|+++++ +++- ..+ ..+++|+.|+++++.+++..- +.+++
T Consensus 108 l~~l~~L~~L~L~~n~i~~~--~~-l~~l~~L~~L~l~~n~l~~~--~~l-~~l~~L~~L~L~~N~l~~~~~---l~~l~ 178 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNGISDI--NG-LVHLPQLESLYLGNNKITDI--TVL-SRLTKLDTLSLEDNQISDIVP---LAGLT 178 (291)
T ss_dssp GTTCTTCCEEECTTSCCCCC--GG-GGGCTTCCEEECCSSCCCCC--GGG-GGCTTCSEEECCSSCCCCCGG---GTTCT
T ss_pred hccCCCCCEEECCCCcCCCC--hh-hcCCCCCCEEEccCCcCCcc--hhh-ccCCCCCEEEccCCccccchh---hcCCC
Confidence 34445555555555543321 11 123455555555554 3221 112 245555555555555554221 34455
Q ss_pred CCcEEeeeCC
Q 025607 165 NLEVLNISHC 174 (250)
Q Consensus 165 ~L~~Ldls~C 174 (250)
+|++|++++|
T Consensus 179 ~L~~L~L~~N 188 (291)
T 1h6t_A 179 KLQNLYLSKN 188 (291)
T ss_dssp TCCEEECCSS
T ss_pred ccCEEECCCC
Confidence 5666666555
No 33
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.56 E-value=1.9e-09 Score=94.47 Aligned_cols=81 Identities=16% Similarity=0.159 Sum_probs=36.7
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCC
Q 025607 36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR 115 (250)
Q Consensus 36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~ 115 (250)
..+.++.|+++++. ++ ..-..+. .+++|++|+|+++ .++ .+...+.++++|++|++++|.++ ..... ...++
T Consensus 79 ~~~~l~~L~L~~n~-l~-~lp~~l~-~l~~L~~L~L~~n-~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~-l~~l~ 150 (328)
T 4fcg_A 79 TQPGRVALELRSVP-LP-QFPDQAF-RLSHLQHMTIDAA-GLM--ELPDTMQQFAGLETLTLARNPLR-ALPAS-IASLN 150 (328)
T ss_dssp TSTTCCEEEEESSC-CS-SCCSCGG-GGTTCSEEEEESS-CCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGG-GGGCT
T ss_pred cccceeEEEccCCC-ch-hcChhhh-hCCCCCEEECCCC-Ccc--chhHHHhccCCCCEEECCCCccc-cCcHH-HhcCc
Confidence 34666677665543 21 1111122 3556666666654 233 12223445566666666665443 11111 22345
Q ss_pred CCceeEecC
Q 025607 116 NFRELKIMG 124 (250)
Q Consensus 116 ~L~~L~L~~ 124 (250)
+|++|++++
T Consensus 151 ~L~~L~L~~ 159 (328)
T 4fcg_A 151 RLRELSIRA 159 (328)
T ss_dssp TCCEEEEEE
T ss_pred CCCEEECCC
Confidence 555555544
No 34
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.54 E-value=2.3e-08 Score=86.69 Aligned_cols=135 Identities=16% Similarity=0.129 Sum_probs=91.0
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHH--hcCCCCCEEEecCCCCC--HHHHHHHHH
Q 025607 37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAI--RMWRDLESLTMPSIANP--PYLMEEIAQ 112 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~--~~c~~L~~L~Ls~c~~~--d~~l~~i~~ 112 (250)
.++++.|+++++.. +......+ ..+++|+.|+|+++...+..++...+ .++++|++|++++|.++ +.....+..
T Consensus 148 ~~~L~~L~L~~N~l-~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 225 (312)
T 1wwl_A 148 KPGLKVLSIAQAHS-LNFSCEQV-RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225 (312)
T ss_dssp CTTCCEEEEESCSC-CCCCTTTC-CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH
T ss_pred cCCCcEEEeeCCCC-ccchHHHh-ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh
Confidence 47899999887642 22111111 35789999999987544334443333 78899999999999887 344556667
Q ss_pred hCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607 113 NCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 177 (250)
Q Consensus 113 ~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i 177 (250)
.+++|++|+++++ +++.........+++|++|+++.|.++ .+..-+ .++|++||++++..-
T Consensus 226 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~--~ip~~~--~~~L~~L~Ls~N~l~ 287 (312)
T 1wwl_A 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK--QVPKGL--PAKLSVLDLSYNRLD 287 (312)
T ss_dssp TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS--SCCSSC--CSEEEEEECCSSCCC
T ss_pred cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC--hhhhhc--cCCceEEECCCCCCC
Confidence 7899999999988 554221111225689999999888887 222111 178999999998643
No 35
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.53 E-value=5.5e-08 Score=83.70 Aligned_cols=126 Identities=20% Similarity=0.183 Sum_probs=91.8
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCC
Q 025607 36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR 115 (250)
Q Consensus 36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~ 115 (250)
..++++.|.++++.. ++ +.. ...+++|+.|+|+++ .+++- ..+..+++|+.|++++|.+++- .....++
T Consensus 88 ~l~~L~~L~l~~n~l-~~--~~~-l~~l~~L~~L~L~~n-~i~~~---~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~ 156 (291)
T 1h6t_A 88 NLKNLGWLFLDENKV-KD--LSS-LKDLKKLKSLSLEHN-GISDI---NGLVHLPQLESLYLGNNKITDI---TVLSRLT 156 (291)
T ss_dssp TCTTCCEEECCSSCC-CC--GGG-GTTCTTCCEEECTTS-CCCCC---GGGGGCTTCCEEECCSSCCCCC---GGGGGCT
T ss_pred cCCCCCEEECCCCcC-CC--Chh-hccCCCCCEEECCCC-cCCCC---hhhcCCCCCCEEEccCCcCCcc---hhhccCC
Confidence 356777777776543 22 222 346788999999877 44432 2467899999999999977653 2334689
Q ss_pred CCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607 116 NFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 178 (250)
Q Consensus 116 ~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~ 178 (250)
+|++|+++++ +++-.. ...+++|+.|+++++.+++- .. +..+++|+.|+++++....
T Consensus 157 ~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l--~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 157 KLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL--RA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBC--GG-GTTCTTCSEEEEEEEEEEC
T ss_pred CCCEEEccCCccccchh---hcCCCccCEEECCCCcCCCC--hh-hccCCCCCEEECcCCcccC
Confidence 9999999988 554222 34899999999999999873 33 5779999999999986543
No 36
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.52 E-value=4.1e-09 Score=91.32 Aligned_cols=137 Identities=15% Similarity=0.082 Sum_probs=76.1
Q ss_pred CCCccEEEecCCCCCCH---HHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHH-HHHHH--
Q 025607 37 RGSIRTLIFHFNLYVSD---DQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPY-LMEEI-- 110 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d---~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~-~l~~i-- 110 (250)
.++++.|+++.+..-.. -....+. .+++|++|+|+++. ++.. ....+.++++|++|++++|.++.. .+..-
T Consensus 116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 192 (310)
T 4glp_A 116 GLALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQAH-SPAF-SCEQVRAFPALTSLDLSDNPGLGERGLMAALC 192 (310)
T ss_dssp CBCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECCS-SCCC-CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSC
T ss_pred CCCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCCC-cchh-hHHHhccCCCCCEEECCCCCCccchhhhHHHh
Confidence 44566677766542211 1112222 57788888887663 3221 112345677788888887765432 22111
Q ss_pred HHhCCCCceeEecCC-CC--HHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcC---CCCcEEeeeCCCCc
Q 025607 111 AQNCRNFRELKIMGP-FD--LLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGL---QNLEVLNISHCLLI 177 (250)
Q Consensus 111 ~~~c~~L~~L~L~~~-i~--d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c---~~L~~Ldls~C~~i 177 (250)
...+|+|++|+++++ ++ ......+...+++|++|+|++|.+++.....+ ..+ ++|++|++++|..-
T Consensus 193 ~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~-~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 193 PHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA-PRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp TTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC-SSCCCCTTCCCEECCSSCCC
T ss_pred hhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhH-HhccCcCcCCEEECCCCCCC
Confidence 135677888888777 54 33333344567788888887777765321111 222 67777777777543
No 37
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.52 E-value=8.2e-08 Score=83.22 Aligned_cols=35 Identities=23% Similarity=0.241 Sum_probs=14.4
Q ss_pred cCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCC
Q 025607 137 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHC 174 (250)
Q Consensus 137 ~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C 174 (250)
.+++|+.|+++++.+++-.- +..+++|++|++++|
T Consensus 171 ~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 171 NLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNN 205 (308)
T ss_dssp TCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTS
T ss_pred CCCCCCEEECCCCccCcChh---hcCCCCCCEEEccCC
Confidence 34444444444444432111 233444444444444
No 38
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.52 E-value=8.2e-08 Score=83.22 Aligned_cols=123 Identities=15% Similarity=0.107 Sum_probs=74.9
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607 37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN 116 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~ 116 (250)
.++++.|+++++..-.-.. ...+++|+.|+|+++. +++- ..+..+++|++|++++|.+++- .. ...+++
T Consensus 62 l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~~n~-l~~~---~~~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~ 130 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDLAP----LKNLTKITELELSGNP-LKNV---SAIAGLQSIKTLDLTSTQITDV--TP-LAGLSN 130 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCC-CSCC---GGGTTCTTCCEEECTTSCCCCC--GG-GTTCTT
T ss_pred cCCCCEEEccCCcCCCChh----HccCCCCCEEEccCCc-CCCc---hhhcCCCCCCEEECCCCCCCCc--hh-hcCCCC
Confidence 5677777777653222111 3467778888887663 4331 1356677788888877765542 12 345677
Q ss_pred CceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607 117 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL 176 (250)
Q Consensus 117 L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~ 176 (250)
|++|+++++ +++-.. ...+++|++|+++.+.+++-. . +..+++|+.|++++|..
T Consensus 131 L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 131 LQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLT--P-LANLSKLTTLKADDNKI 185 (308)
T ss_dssp CCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCC
T ss_pred CCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCCCh--h-hcCCCCCCEEECCCCcc
Confidence 888887776 432111 236777888888777776522 2 45677788888777754
No 39
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.52 E-value=7.5e-09 Score=89.65 Aligned_cols=137 Identities=13% Similarity=0.114 Sum_probs=91.2
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHH--HhcCCCCCEEEecCCCCC--HHHHHHHH
Q 025607 36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKA--IRMWRDLESLTMPSIANP--PYLMEEIA 111 (250)
Q Consensus 36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~--~~~c~~L~~L~Ls~c~~~--d~~l~~i~ 111 (250)
..++++.|+++.+.. +...- .....+++|++|+|+++...++.++... ..++++|++|++++|.++ +.....+.
T Consensus 143 ~~~~L~~L~Ls~n~l-~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 220 (310)
T 4glp_A 143 LKPGLKVLSIAQAHS-PAFSC-EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA 220 (310)
T ss_dssp BCSCCCEEEEECCSS-CCCCT-TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred hccCCCEEEeeCCCc-chhhH-HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence 577899999887643 21111 1113578999999998754555555432 367899999999999876 34444456
Q ss_pred HhCCCCceeEecCC-CCHHHHHHHHh--cCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607 112 QNCRNFRELKIMGP-FDLLFASTLNM--YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 178 (250)
Q Consensus 112 ~~c~~L~~L~L~~~-i~d~~~~~i~~--~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~ 178 (250)
..+++|++|+++++ +++.....+.. .+++|++|++++|.++. +.. .-.++|++||++++..-.
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~--lp~--~~~~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ--VPK--GLPAKLRVLDLSSNRLNR 286 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS--CCS--CCCSCCSCEECCSCCCCS
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc--hhh--hhcCCCCEEECCCCcCCC
Confidence 67899999999988 54432111221 23799999998888882 221 114789999999986543
No 40
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.51 E-value=4e-09 Score=95.58 Aligned_cols=136 Identities=14% Similarity=0.060 Sum_probs=85.9
Q ss_pred CCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCC
Q 025607 38 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF 117 (250)
Q Consensus 38 ~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L 117 (250)
++++.|+++++. +++..... ...+++|++|+|+++..... .-...+.++++|++|++++|.++......+ ..+++|
T Consensus 30 ~~l~~L~Ls~n~-i~~~~~~~-~~~l~~L~~L~L~~n~~~~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L 105 (455)
T 3v47_A 30 AHVNYVDLSLNS-IAELNETS-FSRLQDLQFLKVEQQTPGLV-IRNNTFRGLSSLIILKLDYNQFLQLETGAF-NGLANL 105 (455)
T ss_dssp TTCCEEECCSSC-CCEECTTT-TSSCTTCCEEECCCCSTTCE-ECTTTTTTCTTCCEEECTTCTTCEECTTTT-TTCTTC
T ss_pred CccCEEEecCCc-cCcCChhH-hccCccccEEECcCCcccce-ECcccccccccCCEEeCCCCccCccChhhc-cCcccC
Confidence 567788887653 33211111 23578888888887642111 001235678888888888886654333233 346888
Q ss_pred ceeEecCC-CCHHHHHH-HHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607 118 RELKIMGP-FDLLFAST-LNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 177 (250)
Q Consensus 118 ~~L~L~~~-i~d~~~~~-i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i 177 (250)
++|+++++ +++..... ....+++|++|+++++.++......++.++++|++|+++++...
T Consensus 106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 88888888 66543332 12367888888887777775433344667888888888888643
No 41
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.49 E-value=3.5e-08 Score=91.05 Aligned_cols=134 Identities=16% Similarity=0.183 Sum_probs=82.3
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCC
Q 025607 36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR 115 (250)
Q Consensus 36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~ 115 (250)
..+.++.|+++++. +++.....+ ..+++|+.|+|+++..-+-..+...+..+++|+.|++++|.++..........++
T Consensus 322 ~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 322 KISPFLHLDFSNNL-LTDTVFENC-GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SCCCCCEEECCSSC-CCTTTTTTC-CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hCCcccEEEeECCc-cChhhhhhh-ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 45667777776653 333222222 3567788888877643332345555677888888888888665422222223457
Q ss_pred CCceeEecCC-CCHHHHHHHHhcC-CCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607 116 NFRELKIMGP-FDLLFASTLNMYL-PKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 177 (250)
Q Consensus 116 ~L~~L~L~~~-i~d~~~~~i~~~~-~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i 177 (250)
+|++|+++++ ++... ...+ ++|+.|+++++.++ .+..-+.++++|++|++++|..-
T Consensus 400 ~L~~L~Ls~N~l~~~~----~~~l~~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTI----FRCLPPRIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp TCCEEECCSSCCCGGG----GGSCCTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCC
T ss_pred cCCEEECcCCCCCcch----hhhhcccCCEEECCCCccc--ccchhhhcCCCCCEEECCCCcCC
Confidence 8888888777 65422 2233 58888888777777 34333347888888888888543
No 42
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.49 E-value=8e-08 Score=91.22 Aligned_cols=122 Identities=19% Similarity=0.204 Sum_probs=62.0
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607 37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN 116 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~ 116 (250)
.++|+.|+++.+..-.-.. ...+++|+.|+|+++ .+++ +. .+..+++|++|+|++|.+++- .. ...+++
T Consensus 64 l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N-~l~~--l~-~l~~l~~L~~L~Ls~N~l~~l--~~-l~~l~~ 132 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDEN-KIKD--LS-SLKDLKKLKSLSLEHNGISDI--NG-LVHLPQ 132 (605)
T ss_dssp CTTCCEEECTTSCCCCCGG----GGGCTTCCEEECCSS-CCCC--CT-TSTTCTTCCEEECTTSCCCCC--GG-GGGCTT
T ss_pred CCCCCEEEeeCCCCCCChh----hccCCCCCEEECcCC-CCCC--Ch-hhccCCCCCEEEecCCCCCCC--cc-ccCCCc
Confidence 4556666665543211111 235666666666655 2322 11 245566666666666654431 11 234566
Q ss_pred CceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607 117 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 175 (250)
Q Consensus 117 L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~ 175 (250)
|+.|+|+++ +++- ..+ ..+++|+.|+|+.|.+++..- +..+++|+.|+|++|.
T Consensus 133 L~~L~Ls~N~l~~l--~~l-~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 133 LESLYLGNNKITDI--TVL-SRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp CSEEECCSSCCCCC--GGG-GSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSC
T ss_pred cCEEECCCCccCCc--hhh-cccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCC
Confidence 666666665 3331 122 256666666665555554221 4456666666666663
No 43
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.49 E-value=9.7e-09 Score=81.66 Aligned_cols=110 Identities=15% Similarity=0.127 Sum_probs=79.2
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCC
Q 025607 62 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK 140 (250)
Q Consensus 62 ~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~ 140 (250)
.+++|+.|+++++ .++. +..+....++|+.|++++|.+++- .. ...+++|+.|+++++ ++.-. ..+...+++
T Consensus 17 ~~~~L~~L~l~~n-~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~--~~-l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~ 89 (176)
T 1a9n_A 17 NAVRDRELDLRGY-KIPV--IENLGATLDQFDAIDFSDNEIRKL--DG-FPLLRRLKTLLVNNNRICRIG-EGLDQALPD 89 (176)
T ss_dssp CTTSCEEEECTTS-CCCS--CCCGGGGTTCCSEEECCSSCCCEE--CC-CCCCSSCCEEECCSSCCCEEC-SCHHHHCTT
T ss_pred CcCCceEEEeeCC-CCch--hHHhhhcCCCCCEEECCCCCCCcc--cc-cccCCCCCEEECCCCcccccC-cchhhcCCC
Confidence 4688999999987 4542 233444456999999999987753 22 245799999999988 54211 122247899
Q ss_pred ccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607 141 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 178 (250)
Q Consensus 141 L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~ 178 (250)
|++|++++|.+++-.-...+.++++|++|+++++...+
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~ 127 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN 127 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC
Confidence 99999999998763321245689999999999997543
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.47 E-value=6.5e-09 Score=91.09 Aligned_cols=133 Identities=19% Similarity=0.264 Sum_probs=92.2
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHH-----
Q 025607 37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIA----- 111 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~----- 111 (250)
.++++.|+++++. ++ .+..-...+++|++|+|+++ .++ .+...+.++++|++|++++|.........+.
T Consensus 103 l~~L~~L~L~~n~-l~--~lp~~~~~l~~L~~L~Ls~n-~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~ 176 (328)
T 4fcg_A 103 LSHLQHMTIDAAG-LM--ELPDTMQQFAGLETLTLARN-PLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176 (328)
T ss_dssp GTTCSEEEEESSC-CC--CCCSCGGGGTTCSEEEEESC-CCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-C
T ss_pred CCCCCEEECCCCC-cc--chhHHHhccCCCCEEECCCC-ccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccch
Confidence 4578888887764 33 12222246899999999976 454 3444578899999999999854332222222
Q ss_pred ---HhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCC
Q 025607 112 ---QNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV 179 (250)
Q Consensus 112 ---~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~ 179 (250)
..+++|++|+++++ ++ .....+ ..+++|++|+++++.++. +..-+.++++|++|++++|.....
T Consensus 177 ~~~~~l~~L~~L~L~~n~l~-~lp~~l-~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~ 244 (328)
T 4fcg_A 177 GEHQGLVNLQSLRLEWTGIR-SLPASI-ANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRN 244 (328)
T ss_dssp CCEEESTTCCEEEEEEECCC-CCCGGG-GGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTTCTTCCB
T ss_pred hhhccCCCCCEEECcCCCcC-cchHhh-cCCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcCCcchhh
Confidence 24799999999887 54 111123 378999999998888883 333466789999999999987654
No 45
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.46 E-value=5.5e-09 Score=84.68 Aligned_cols=107 Identities=21% Similarity=0.191 Sum_probs=77.3
Q ss_pred hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCC
Q 025607 61 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLP 139 (250)
Q Consensus 61 ~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~ 139 (250)
..+++|+.|+|+++ .++. +. .+.++++|+.|++++|.++. +......+++|++|+++++ ++. +..+. .++
T Consensus 45 ~~l~~L~~L~ls~n-~l~~--l~-~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~--l~~~~-~l~ 115 (198)
T 1ds9_A 45 STLKACKHLALSTN-NIEK--IS-SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIAS--LSGIE-KLV 115 (198)
T ss_dssp HHTTTCSEEECSEE-EESC--CC-CHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCC--HHHHH-HHH
T ss_pred hcCCCCCEEECCCC-CCcc--cc-ccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCc--CCccc-cCC
Confidence 46889999999876 3433 22 45678999999999986552 2233445688999999888 654 22444 678
Q ss_pred CccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607 140 KLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL 176 (250)
Q Consensus 140 ~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~ 176 (250)
+|++|+++.+.+++-.....+..+++|++|+++++..
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 9999999888888644334567899999999998853
No 46
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.44 E-value=4.9e-08 Score=84.62 Aligned_cols=139 Identities=19% Similarity=0.183 Sum_probs=94.3
Q ss_pred CCCccEEEecCCCCCC-HHHHHHHHhh-CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHH--HHHHHH-
Q 025607 37 RGSIRTLIFHFNLYVS-DDQLTYTAER-CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPY--LMEEIA- 111 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~-d~~L~~i~~~-c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~--~l~~i~- 111 (250)
.++++.|+++++..-. +..+..+... .++|++|+|+++. ++... ...+.++++|++|++++|.++.. .+..+.
T Consensus 120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFS-CEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCC-TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-Cccch-HHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 4567778777654221 2233333221 3899999999773 43211 12356889999999999976654 223331
Q ss_pred HhCCCCceeEecCC-CC--HHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607 112 QNCRNFRELKIMGP-FD--LLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 177 (250)
Q Consensus 112 ~~c~~L~~L~L~~~-i~--d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i 177 (250)
..+++|++|+++++ ++ ......+...+++|++|+++.|.+++..-......+++|++|++++|..-
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence 67899999999998 66 23444565688999999999898887441222345799999999999754
No 47
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.43 E-value=1.5e-08 Score=86.18 Aligned_cols=38 Identities=24% Similarity=0.227 Sum_probs=17.1
Q ss_pred cCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607 137 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 175 (250)
Q Consensus 137 ~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~ 175 (250)
.+++|+.|+++.+.+++.. ...+.++++|++|++++|.
T Consensus 155 ~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 155 KLTNLTELDLSYNQLQSLP-EGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp TCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred cCccCCEEECCCCCcCccC-HHHhcCCccCCEEECCCCc
Confidence 3455555555444444211 1112344555555555553
No 48
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.41 E-value=7.2e-08 Score=81.79 Aligned_cols=121 Identities=19% Similarity=0.206 Sum_probs=68.6
Q ss_pred CCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCC
Q 025607 38 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF 117 (250)
Q Consensus 38 ~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L 117 (250)
.+++.|+++++. +++ +.. ...+++|+.|+|+++ .+++-. . +.++++|++|++++|.+++- ..+.. ++|
T Consensus 41 ~~L~~L~l~~n~-i~~--l~~-l~~l~~L~~L~L~~N-~i~~~~--~-l~~l~~L~~L~L~~N~l~~l--~~~~~--~~L 108 (263)
T 1xeu_A 41 SGVQNFNGDNSN-IQS--LAG-MQFFTNLKELHLSHN-QISDLS--P-LKDLTKLEELSVNRNRLKNL--NGIPS--ACL 108 (263)
T ss_dssp TTCSEEECTTSC-CCC--CTT-GGGCTTCCEEECCSS-CCCCCG--G-GTTCSSCCEEECCSSCCSCC--TTCCC--SSC
T ss_pred CcCcEEECcCCC-ccc--chH-HhhCCCCCEEECCCC-ccCCCh--h-hccCCCCCEEECCCCccCCc--Ccccc--Ccc
Confidence 466677776653 222 112 235778888888765 344321 1 56777888888877755431 11111 667
Q ss_pred ceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607 118 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL 176 (250)
Q Consensus 118 ~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~ 176 (250)
++|+++++ +++- ..+ ..+++|+.|+++.|.+++-. .+..+++|++|+++++..
T Consensus 109 ~~L~L~~N~l~~~--~~l-~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 109 SRLFLDNNELRDT--DSL-IHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp CEEECCSSCCSBS--GGG-TTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCC
T ss_pred cEEEccCCccCCC--hhh-cCcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcC
Confidence 77777666 4331 122 25667777777666666531 244566777777766643
No 49
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.41 E-value=2e-07 Score=85.08 Aligned_cols=80 Identities=18% Similarity=0.087 Sum_probs=36.3
Q ss_pred hcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCC
Q 025607 87 RMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQN 165 (250)
Q Consensus 87 ~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~ 165 (250)
..+++|++|++++|.+++-.. ...+++|++|+++++ +++... ...+++|+.|++.++.+++. . -+.++++
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~-~l~~l~~ 354 (466)
T 1o6v_A 284 AGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDV--S-SLANLTN 354 (466)
T ss_dssp TTCTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCC--G-GGTTCTT
T ss_pred cCCCccCeEEcCCCcccCchh---hcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCccCCc--h-hhccCCC
Confidence 344444444444443322111 223455555555554 322111 12455555555555555542 1 2344566
Q ss_pred CcEEeeeCCC
Q 025607 166 LEVLNISHCL 175 (250)
Q Consensus 166 L~~Ldls~C~ 175 (250)
|+.|++++|.
T Consensus 355 L~~L~l~~n~ 364 (466)
T 1o6v_A 355 INWLSAGHNQ 364 (466)
T ss_dssp CCEEECCSSC
T ss_pred CCEEeCCCCc
Confidence 6666666654
No 50
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.41 E-value=1.4e-07 Score=89.59 Aligned_cols=127 Identities=20% Similarity=0.180 Sum_probs=95.2
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCC
Q 025607 36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR 115 (250)
Q Consensus 36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~ 115 (250)
..++|+.|.++.+..-. +.. ...+++|+.|+|+++. +++ + ..+..+++|+.|+|++|.+++- .....++
T Consensus 85 ~l~~L~~L~Ls~N~l~~---l~~-l~~l~~L~~L~Ls~N~-l~~--l-~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~ 153 (605)
T 1m9s_A 85 NLKNLGWLFLDENKIKD---LSS-LKDLKKLKSLSLEHNG-ISD--I-NGLVHLPQLESLYLGNNKITDI---TVLSRLT 153 (605)
T ss_dssp GCTTCCEEECCSSCCCC---CTT-STTCTTCCEEECTTSC-CCC--C-GGGGGCTTCSEEECCSSCCCCC---GGGGSCT
T ss_pred cCCCCCEEECcCCCCCC---Chh-hccCCCCCEEEecCCC-CCC--C-ccccCCCccCEEECCCCccCCc---hhhcccC
Confidence 46789999998765332 122 2468999999999874 443 2 2367899999999999977653 2345689
Q ss_pred CCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCC
Q 025607 116 NFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV 179 (250)
Q Consensus 116 ~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~ 179 (250)
+|+.|+|+++ +++... ...+++|+.|+|++|.+++- . -+..+++|+.|+|++|.....
T Consensus 154 ~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l--~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 154 KLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL--R-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp TCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBC--G-GGTTCTTCSEEECCSEEEECC
T ss_pred CCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCC--h-HHccCCCCCEEEccCCcCcCC
Confidence 9999999998 554222 34899999999998999873 2 356799999999999976543
No 51
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.40 E-value=1.6e-07 Score=85.83 Aligned_cols=125 Identities=14% Similarity=0.096 Sum_probs=89.0
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607 37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN 116 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~ 116 (250)
.+.++.|.++++..-.... ...+++|+.|+++++. +++. . .+..+++|+.|++++|.+++... ...+++
T Consensus 264 l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~~n~-l~~~--~-~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~ 332 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP----LAGLTALTNLELNENQ-LEDI--S-PISNLKNLTYLTLYFNNISDISP---VSSLTK 332 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSC-CSCC--G-GGGGCTTCSEEECCSSCCSCCGG---GGGCTT
T ss_pred CCCCCEEECCCCccCcccc----ccCCCccCeEEcCCCc-ccCc--h-hhcCCCCCCEEECcCCcCCCchh---hccCcc
Confidence 4556666666543222111 3457888888888763 3321 1 16789999999999997765432 357899
Q ss_pred CceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607 117 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 178 (250)
Q Consensus 117 L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~ 178 (250)
|++|+++++ +++. ..++ .+++|+.|+++++.+++..- +..+++|+.|++++|.-..
T Consensus 333 L~~L~l~~n~l~~~--~~l~-~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 333 LQRLFFYNNKVSDV--SSLA-NLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCEEECCSSCCCCC--GGGT-TCTTCCEEECCSSCCCBCGG---GTTCTTCCEEECCCEEEEC
T ss_pred CCEeECCCCccCCc--hhhc-cCCCCCEEeCCCCccCccch---hhcCCCCCEEeccCCcccC
Confidence 999999998 5543 2333 78999999998889886542 6789999999999997544
No 52
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.40 E-value=6.4e-08 Score=89.24 Aligned_cols=135 Identities=15% Similarity=0.129 Sum_probs=95.0
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCC
Q 025607 36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR 115 (250)
Q Consensus 36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~ 115 (250)
..+.++.|.++++..-+-..+......+++|+.|+|+++. ++...-...+..+++|++|++++|.+++.....+. +
T Consensus 346 ~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~---~ 421 (520)
T 2z7x_B 346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP---P 421 (520)
T ss_dssp CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC---T
T ss_pred cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CCcccccchhccCccCCEEECcCCCCCcchhhhhc---c
Confidence 3567899999887644333444444578999999999874 43211111345679999999999988765433322 7
Q ss_pred CCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHH-HHhcCCCCcEEeeeCCCCcC
Q 025607 116 NFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALIL-ILDGLQNLEVLNISHCLLID 178 (250)
Q Consensus 116 ~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~-i~~~c~~L~~Ldls~C~~i~ 178 (250)
+|+.|+++++ ++ .....+. .+++|++|++++|.++. +.. .+..+++|++|+++++...-
T Consensus 422 ~L~~L~Ls~N~l~-~ip~~~~-~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 422 RIKVLDLHSNKIK-SIPKQVV-KLEALQELNVASNQLKS--VPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp TCCEEECCSSCCC-CCCGGGG-GCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCEEECCCCccc-ccchhhh-cCCCCCEEECCCCcCCc--cCHHHhccCCcccEEECcCCCCcc
Confidence 9999999998 65 1112233 79999999998888884 322 35678999999999997543
No 53
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.40 E-value=8.8e-09 Score=83.88 Aligned_cols=133 Identities=14% Similarity=0.076 Sum_probs=82.9
Q ss_pred CCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCC
Q 025607 38 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF 117 (250)
Q Consensus 38 ~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L 117 (250)
++++.|+++++. ++. ........+++|++|+|+++ .++.- ....+..+++|++|++++|.++.-. ......+++|
T Consensus 28 ~~l~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L 102 (208)
T 2o6s_A 28 AQTTYLDLETNS-LKS-LPNGVFDELTSLTQLYLGGN-KLQSL-PNGVFNKLTSLTYLNLSTNQLQSLP-NGVFDKLTQL 102 (208)
T ss_dssp TTCSEEECCSSC-CCC-CCTTTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTC
T ss_pred CCCcEEEcCCCc-cCc-CChhhhcccccCcEEECCCC-ccCcc-ChhhcCCCCCcCEEECCCCcCCccC-HhHhcCccCC
Confidence 467778777653 221 11112246788999999875 44421 1123467889999999988665221 1122457899
Q ss_pred ceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607 118 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 177 (250)
Q Consensus 118 ~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i 177 (250)
++|+++++ ++.-.. .....+++|++|+++.+.++... ...+..+++|++|+++++...
T Consensus 103 ~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 103 KELALNTNQLQSLPD-GVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCCBC
T ss_pred CEEEcCCCcCcccCH-hHhccCCcCCEEECCCCccceeC-HHHhccCCCccEEEecCCCee
Confidence 99999877 442111 11236789999999778777421 123456889999999988543
No 54
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.39 E-value=3.9e-08 Score=83.53 Aligned_cols=129 Identities=20% Similarity=0.198 Sum_probs=89.3
Q ss_pred CCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCC
Q 025607 38 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF 117 (250)
Q Consensus 38 ~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L 117 (250)
..++.+.++.+..-+.. .+ ..+++|++|+|+++. +++ + ..+..+++|++|++++|.++.-.. .....+++|
T Consensus 41 ~~L~~L~l~~~~i~~~~---~l-~~l~~L~~L~l~~n~-l~~--~-~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L 111 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQ---GI-QYLPNVRYLALGGNK-LHD--I-SALKELTNLTYLILTGNQLQSLPN-GVFDKLTNL 111 (272)
T ss_dssp TTCCEEECTTSCCCCCT---TG-GGCTTCCEEECTTSC-CCC--C-GGGTTCTTCCEEECTTSCCCCCCT-TTTTTCTTC
T ss_pred cceeeeeeCCCCccccc---cc-ccCCCCcEEECCCCC-CCC--c-hhhcCCCCCCEEECCCCccCccCh-hHhcCCcCC
Confidence 46778888765432222 22 468999999999874 443 2 246789999999999997653221 222467999
Q ss_pred ceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607 118 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 177 (250)
Q Consensus 118 ~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i 177 (250)
++|+++++ ++.-....+ ..+++|++|+++++.++.-. ...+.++++|++|++++|..-
T Consensus 112 ~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVF-DKLTNLTYLNLAHNQLQSLP-KGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp CEEECTTSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCC
T ss_pred CEEECCCCcCCccCHHHh-ccCCCCCEEECCCCccCccC-HHHhccCccCCEEECCCCCcC
Confidence 99999988 542211112 37899999999888887422 223467899999999999643
No 55
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.38 E-value=2.9e-08 Score=80.40 Aligned_cols=123 Identities=22% Similarity=0.163 Sum_probs=88.8
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607 37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN 116 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~ 116 (250)
.++++.|+++++. +++ +.. ...+++|+.|+++++ .++ .+...+..+++|+.|++++|.++. +..+. .+++
T Consensus 47 l~~L~~L~ls~n~-l~~--l~~-~~~l~~L~~L~l~~n-~l~--~l~~~~~~~~~L~~L~L~~N~l~~--l~~~~-~l~~ 116 (198)
T 1ds9_A 47 LKACKHLALSTNN-IEK--ISS-LSGMENLRILSLGRN-LIK--KIENLDAVADTLEELWISYNQIAS--LSGIE-KLVN 116 (198)
T ss_dssp TTTCSEEECSEEE-ESC--CCC-HHHHTTCCEEEEEEE-EEC--SCSSHHHHHHHCSEEEEEEEECCC--HHHHH-HHHH
T ss_pred CCCCCEEECCCCC-Ccc--ccc-cccCCCCCEEECCCC-Ccc--cccchhhcCCcCCEEECcCCcCCc--CCccc-cCCC
Confidence 5688899887653 322 222 246799999999987 444 233455667999999999997775 33443 5699
Q ss_pred CceeEecCC-CCHHH-HHHHHhcCCCccEEEeecCCCCHH---------HHHHHHhcCCCCcEEe
Q 025607 117 FRELKIMGP-FDLLF-ASTLNMYLPKLKVLSLRCTTLNRD---------ALILILDGLQNLEVLN 170 (250)
Q Consensus 117 L~~L~L~~~-i~d~~-~~~i~~~~~~L~~L~L~~~~itd~---------~l~~i~~~c~~L~~Ld 170 (250)
|++|+++++ +++-. +..+. .+++|++|++.+|.+++. ....++..+|+|+.||
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLA-ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHT-TTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCEEECCCCcCCchhHHHHHh-cCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 999999988 76533 34444 899999999988887654 2234577899999998
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.35 E-value=3e-08 Score=84.53 Aligned_cols=133 Identities=14% Similarity=0.030 Sum_probs=68.5
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607 37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN 116 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~ 116 (250)
.++++.|+++++..++.-.... ...+++|++|+|+++. ++.. ....+.++++|++|++++|.++.-.... ...+++
T Consensus 79 l~~L~~L~l~~n~~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~ 154 (285)
T 1ozn_A 79 LALLEQLDLSDNAQLRSVDPAT-FHGLGRLHTLHLDRCG-LQEL-GPGLFRGLAALQYLYLQDNALQALPDDT-FRDLGN 154 (285)
T ss_dssp CTTCCEEECCSCTTCCCCCTTT-TTTCTTCCEEECTTSC-CCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTT
T ss_pred ccCCCEEeCCCCCCccccCHHH-hcCCcCCCEEECCCCc-CCEE-CHhHhhCCcCCCEEECCCCcccccCHhH-hccCCC
Confidence 4567777777664333211111 1346778888887663 3221 0123456777777777777554211111 134577
Q ss_pred CceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607 117 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 175 (250)
Q Consensus 117 L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~ 175 (250)
|++|+++++ ++.-....+. .+++|++|+++++.+++.... .+.++++|++|+++++.
T Consensus 155 L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 155 LTHLFLHGNRISSVPERAFR-GLHSLDRLLLHQNRVAHVHPH-AFRDLGRLMTLYLFANN 212 (285)
T ss_dssp CCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSC
T ss_pred ccEEECCCCcccccCHHHhc-CccccCEEECCCCcccccCHh-HccCcccccEeeCCCCc
Confidence 777777665 3321111122 456666666665655543211 12345666666666663
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.33 E-value=3.6e-09 Score=91.13 Aligned_cols=136 Identities=17% Similarity=0.155 Sum_probs=73.2
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607 37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN 116 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~ 116 (250)
.++++.|+++++..-..... .....+++|+.|+++++. ++.. ....+.++++|++|++++|.+++..+......+++
T Consensus 100 l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 176 (306)
T 2z66_A 100 LEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTH-TRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 176 (306)
T ss_dssp CTTCCEEECTTSEEESSTTT-TTTTTCTTCCEEECTTSC-CEEC-STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred CCCCCEEECCCCcccccccc-hhhhhccCCCEEECCCCc-CCcc-chhhcccCcCCCEEECCCCccccccchhHHhhCcC
Confidence 45677777765432111100 112356778888887663 2211 11234566777777777775544222223345677
Q ss_pred CceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607 117 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 177 (250)
Q Consensus 117 L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i 177 (250)
|++|+++++ +++.....+. .+++|++|+++++.+++..... +.++++|++|++++|...
T Consensus 177 L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 177 LTFLDLSQCQLEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp CCEEECTTSCCCEECTTTTT-TCTTCCEEECTTSCCSBCCSGG-GTTCTTCCEEECTTSCCC
T ss_pred CCEEECCCCCcCCcCHHHhc-CCCCCCEEECCCCccCccChhh-ccCcccCCEeECCCCCCc
Confidence 777777766 4332122222 5677777777666665432111 345677777777777543
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.33 E-value=1.3e-09 Score=93.89 Aligned_cols=91 Identities=22% Similarity=0.246 Sum_probs=48.4
Q ss_pred HhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCC
Q 025607 86 IRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQ 164 (250)
Q Consensus 86 ~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~ 164 (250)
+.++++|++|++++|.++...... ...+++|++|+++++ +++.........+++|++|+++++.+++... ..+.+++
T Consensus 122 ~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~ 199 (306)
T 2z66_A 122 FLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLS 199 (306)
T ss_dssp TTTCTTCCEEECTTSCCEECSTTT-TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCT
T ss_pred hhhccCCCEEECCCCcCCccchhh-cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH-HHhcCCC
Confidence 345556666666665433211111 123566666666665 4331111222356777777777676665321 2234577
Q ss_pred CCcEEeeeCCCCcC
Q 025607 165 NLEVLNISHCLLID 178 (250)
Q Consensus 165 ~L~~Ldls~C~~i~ 178 (250)
+|++|+++++...+
T Consensus 200 ~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 200 SLQVLNMSHNNFFS 213 (306)
T ss_dssp TCCEEECTTSCCSB
T ss_pred CCCEEECCCCccCc
Confidence 78888887776433
No 59
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.32 E-value=1e-07 Score=80.87 Aligned_cols=125 Identities=18% Similarity=0.203 Sum_probs=91.7
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCC
Q 025607 36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR 115 (250)
Q Consensus 36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~ 115 (250)
..++++.|+++++. +++-. . ...+++|+.|+|+++ .+++ +.. +.. ++|++|++++|.+++- .. ...++
T Consensus 61 ~l~~L~~L~L~~N~-i~~~~--~-l~~l~~L~~L~L~~N-~l~~--l~~-~~~-~~L~~L~L~~N~l~~~--~~-l~~l~ 128 (263)
T 1xeu_A 61 FFTNLKELHLSHNQ-ISDLS--P-LKDLTKLEELSVNRN-RLKN--LNG-IPS-ACLSRLFLDNNELRDT--DS-LIHLK 128 (263)
T ss_dssp GCTTCCEEECCSSC-CCCCG--G-GTTCSSCCEEECCSS-CCSC--CTT-CCC-SSCCEEECCSSCCSBS--GG-GTTCT
T ss_pred hCCCCCEEECCCCc-cCCCh--h-hccCCCCCEEECCCC-ccCC--cCc-ccc-CcccEEEccCCccCCC--hh-hcCcc
Confidence 35789999998764 33211 1 457899999999987 4433 112 222 8999999999977652 22 34689
Q ss_pred CCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607 116 NFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 178 (250)
Q Consensus 116 ~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~ 178 (250)
+|+.|+++++ +++- ..+ ..+++|+.|+++++.+++. ..+..+++|+.|+++++....
T Consensus 129 ~L~~L~Ls~N~i~~~--~~l-~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 129 NLEILSIRNNKLKSI--VML-GFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TCCEEECTTSCCCBC--GGG-GGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEEEEC
T ss_pred cccEEECCCCcCCCC--hHH-ccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCcccC
Confidence 9999999988 6543 233 3799999999999999875 445679999999999987544
No 60
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.32 E-value=2.2e-08 Score=84.02 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=49.1
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCC
Q 025607 62 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK 140 (250)
Q Consensus 62 ~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~ 140 (250)
.+++|+.|+|+++ .++.. ....+.++++|++|++++|.++.-. ......+++|++|+++++ ++.-....+ ..+++
T Consensus 81 ~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~ 156 (251)
T 3m19_A 81 DLTELGTLGLANN-QLASL-PLGVFDHLTQLDKLYLGGNQLKSLP-SGVFDRLTKLKELRLNTNQLQSIPAGAF-DKLTN 156 (251)
T ss_dssp TCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTT
T ss_pred cCCcCCEEECCCC-ccccc-ChhHhcccCCCCEEEcCCCcCCCcC-hhHhccCCcccEEECcCCcCCccCHHHc-CcCcC
Confidence 3455555655544 22210 0012345556666666655443111 011123456666666555 321111111 24566
Q ss_pred ccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607 141 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL 176 (250)
Q Consensus 141 L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~ 176 (250)
|++|+|+.|.++...- ..+..+++|++|+++++.-
T Consensus 157 L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPH-GAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSCCB
T ss_pred CCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCce
Confidence 6666665555552211 1234456666666666543
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.32 E-value=1.9e-08 Score=85.85 Aligned_cols=134 Identities=13% Similarity=0.093 Sum_probs=74.7
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607 37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN 116 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~ 116 (250)
.++++.|+++.+. ++.-.... ...+++|++|+|+++..++... ...+..+++|++|++++|.++...... ...+++
T Consensus 55 ~~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~ 130 (285)
T 1ozn_A 55 CRNLTILWLHSNV-LARIDAAA-FTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLHTLHLDRCGLQELGPGL-FRGLAA 130 (285)
T ss_dssp CTTCCEEECCSSC-CCEECTTT-TTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTT-TTTCTT
T ss_pred CCCCCEEECCCCc-cceeCHhh-cCCccCCCEEeCCCCCCccccC-HHHhcCCcCCCEEECCCCcCCEECHhH-hhCCcC
Confidence 4567777776542 22111111 1346778888887764343211 123456778888888877554321111 234677
Q ss_pred CceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607 117 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL 176 (250)
Q Consensus 117 L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~ 176 (250)
|++|+++++ ++.-....+ ..+++|++|+++++.++.-.. ..+.++++|++|+++++..
T Consensus 131 L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 131 LQYLYLQDNALQALPDDTF-RDLGNLTHLFLHGNRISSVPE-RAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp CCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCC
T ss_pred CCEEECCCCcccccCHhHh-ccCCCccEEECCCCcccccCH-HHhcCccccCEEECCCCcc
Confidence 888888776 432111112 257788888887777663221 1234577788888887754
No 62
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.27 E-value=5.2e-08 Score=91.14 Aligned_cols=131 Identities=18% Similarity=0.168 Sum_probs=88.1
Q ss_pred CCccEEEecCCCC--CCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCC
Q 025607 38 GSIRTLIFHFNLY--VSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR 115 (250)
Q Consensus 38 ~~l~~L~l~~~~~--i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~ 115 (250)
..++.|+++++.- +....+ .++++|++|+|++| .++.-. ..++.++++|++|+|++|.++.-.. .....++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f----~~l~~L~~L~Ls~N-~i~~i~-~~~f~~L~~L~~L~Ls~N~l~~l~~-~~f~~L~ 124 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSF----FSFPELQVLDLSRC-EIQTIE-DGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLS 124 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTT----TTCTTCCEEECTTC-CCCEEC-TTTTTTCTTCCEEECTTCCCCEECG-GGGTTCT
T ss_pred cCCCEEEeeCCCCCCCCHHHH----hCCCCCCEEECCCC-cCCCcC-hhHhcCCCCCCEEEccCCcCCCCCH-HHhcCCC
Confidence 4677888877531 222222 46899999999987 343210 1235788999999999997653211 1224689
Q ss_pred CCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607 116 NFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL 176 (250)
Q Consensus 116 ~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~ 176 (250)
+|++|+++++ ++.-.-..+ ..+++|++|+++.+.++...+.....++++|++|+++++..
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~~-~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp TCCEEECTTSCCCCSTTCCC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCCCChhhh-hcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 9999999887 442111112 37899999999888887544445567789999999999854
No 63
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.26 E-value=2.6e-08 Score=84.55 Aligned_cols=132 Identities=18% Similarity=0.157 Sum_probs=67.1
Q ss_pred CccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCc
Q 025607 39 SIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFR 118 (250)
Q Consensus 39 ~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~ 118 (250)
.++.|+++++. +++-.... ...+++|++|+|+++ .++... ...+.++++|++|++++|.++......+ ..+++|+
T Consensus 29 ~l~~L~ls~n~-l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~ 103 (276)
T 2z62_A 29 STKNLDLSFNP-LRHLGSYS-FFSFPELQVLDLSRC-EIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQ 103 (276)
T ss_dssp TCCEEECTTCC-CCEECTTT-TTTCTTCSEEECTTC-CCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTT-TTCTTCC
T ss_pred CccEEECCCCc-ccccCHhH-hccccCCcEEECCCC-cCCccC-HHHccCCcCCCEEECCCCccCccChhhh-cCCcccc
Confidence 45666665542 22111001 124667777777765 333210 1124556777777777775543222222 2456777
Q ss_pred eeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607 119 ELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL 176 (250)
Q Consensus 119 ~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~ 176 (250)
+|+++++ ++.-....+ ..+++|++|+++.+.++...+...+.++++|++|++++|..
T Consensus 104 ~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 104 KLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp EEECTTSCCCCSTTCCC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred EEECCCCCccccCchhc-ccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence 7777665 322111112 25667777777666665433333345567777777776643
No 64
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.25 E-value=2.9e-09 Score=99.06 Aligned_cols=87 Identities=22% Similarity=0.246 Sum_probs=41.1
Q ss_pred hcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCC
Q 025607 87 RMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQN 165 (250)
Q Consensus 87 ~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~ 165 (250)
.++++|++|++++|.++.... .....+++|++|+++++ +++..+......+++|+.|+++++.+++.... .+.++++
T Consensus 418 ~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~ 495 (570)
T 2z63_A 418 LSLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT-AFNSLSS 495 (570)
T ss_dssp TTCTTCCEEECTTSCCEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCTT
T ss_pred hcCCCCCEEeCcCCcccccch-hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChh-hhhcccC
Confidence 344455555555543322111 11123455666666555 33211111123556666666666666543211 2345667
Q ss_pred CcEEeeeCCC
Q 025607 166 LEVLNISHCL 175 (250)
Q Consensus 166 L~~Ldls~C~ 175 (250)
|++|++++|.
T Consensus 496 L~~L~l~~n~ 505 (570)
T 2z63_A 496 LQVLNMASNQ 505 (570)
T ss_dssp CCEEECCSSC
T ss_pred CCEEeCCCCc
Confidence 7777777764
No 65
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.25 E-value=1.8e-06 Score=79.91 Aligned_cols=65 Identities=18% Similarity=0.182 Sum_probs=27.2
Q ss_pred CCCccEEEecCCCCCCHHHHHHH--HhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCC
Q 025607 37 RGSIRTLIFHFNLYVSDDQLTYT--AERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIAN 102 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d~~L~~i--~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~ 102 (250)
.+.++.|+++++. +++...... ...+++|+.|+|+++.--+-......+..+++|++|++++|.+
T Consensus 333 l~~L~~L~Ls~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 399 (549)
T 2z81_A 333 LKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 399 (549)
T ss_dssp CTTCCEEECCSSC-CCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred CccccEEEccCCc-cccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCC
Confidence 3445555554432 333332211 1234555555555442211111122344555555555555543
No 66
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.24 E-value=1.8e-07 Score=84.66 Aligned_cols=63 Identities=14% Similarity=0.117 Sum_probs=28.3
Q ss_pred hCCCCcEEEcCCCCCCCHHHHH-HHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC
Q 025607 62 RCPQLKRLVMPAWNRIKKTGIC-KAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP 125 (250)
Q Consensus 62 ~c~~L~~L~L~~c~~itd~~l~-~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~ 125 (250)
.+++|++|+|++| .++..... ..+.++++|++|++++|.++......+...+++|++|+++++
T Consensus 101 ~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 101 GLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp TCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred CcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC
Confidence 3556666666655 33322111 123455555555555554433222222234455555555443
No 67
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.23 E-value=1.1e-08 Score=95.12 Aligned_cols=114 Identities=18% Similarity=0.151 Sum_probs=81.5
Q ss_pred hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCC
Q 025607 61 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLP 139 (250)
Q Consensus 61 ~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~ 139 (250)
..+++|+.|++++|. ++.. ....+.++++|++|++++|.+++..+......+++|++|+++++ +++.....+. .++
T Consensus 418 ~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~ 494 (570)
T 2z63_A 418 LSLRNLIYLDISHTH-TRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN-SLS 494 (570)
T ss_dssp TTCTTCCEEECTTSC-CEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT-TCT
T ss_pred hcCCCCCEEeCcCCc-cccc-chhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhh-ccc
Confidence 467888888888773 2211 12345789999999999997664333334456899999999998 5543223333 789
Q ss_pred CccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607 140 KLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 178 (250)
Q Consensus 140 ~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~ 178 (250)
+|++|+++++.+++.. ...+.++++|+.|+++++....
T Consensus 495 ~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 495 SLQVLNMASNQLKSVP-DGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCEEeCCCCcCCCCC-HHHhhcccCCcEEEecCCcccC
Confidence 9999999888887642 2234679999999999987543
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.22 E-value=6.3e-08 Score=84.10 Aligned_cols=106 Identities=14% Similarity=0.053 Sum_probs=50.5
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCc
Q 025607 63 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL 141 (250)
Q Consensus 63 c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L 141 (250)
+++|+.|+|+++ .++......+...+++|++|++++|.++.- ... ..+++|++|+++++ ++.-.. . ...+++|
T Consensus 143 l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~-~~l~~L~~L~Ls~N~l~~l~~-~-~~~l~~L 216 (317)
T 3o53_A 143 RSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQ-VVFAKLKTLDLSSNKLAFMGP-E-FQSAAGV 216 (317)
T ss_dssp GSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECC-CCCTTCCEEECCSSCCCEECG-G-GGGGTTC
T ss_pred cCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCccc--ccc-cccccCCEEECCCCcCCcchh-h-hcccCcc
Confidence 455555555543 333322222333455666666665544322 000 12456666666555 321100 1 1245666
Q ss_pred cEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607 142 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL 176 (250)
Q Consensus 142 ~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~ 176 (250)
++|++++|.++. +...+..+++|+.|+++++..
T Consensus 217 ~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 217 TWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp SEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCC
T ss_pred cEEECcCCcccc--hhhHhhcCCCCCEEEccCCCc
Confidence 666665566552 222234556666666666654
No 69
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.22 E-value=7.2e-09 Score=90.10 Aligned_cols=133 Identities=13% Similarity=0.081 Sum_probs=83.5
Q ss_pred CCccEEEecCCCCCCH--HHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCC
Q 025607 38 GSIRTLIFHFNLYVSD--DQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR 115 (250)
Q Consensus 38 ~~l~~L~l~~~~~i~d--~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~ 115 (250)
++++.|+++++. ++. ..-..+ ..+++|++|+|++++.++.. +...+.++++|++|++++|.++......+ ..++
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSSL-ANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQIK 125 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGG-GGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGG-GGCT
T ss_pred ceEEEEECCCCC-ccCCcccChhH-hCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHH-hCCC
Confidence 578888887654 222 111222 36889999999864454422 12235788999999999887653333333 3478
Q ss_pred CCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCC-CCcEEeeeCCCC
Q 025607 116 NFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQ-NLEVLNISHCLL 176 (250)
Q Consensus 116 ~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~-~L~~Ldls~C~~ 176 (250)
+|++|+++++ ++......+. .+++|++|++..+.++...... +..++ +|++|+++++..
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEE
T ss_pred CCCEEeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCee
Confidence 9999999887 4422222233 6888999988777776332222 33455 788888888754
No 70
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.22 E-value=1.9e-07 Score=88.02 Aligned_cols=106 Identities=18% Similarity=0.193 Sum_probs=75.4
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCcc
Q 025607 64 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK 142 (250)
Q Consensus 64 ~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~ 142 (250)
..|+.|+|+++ .++. +.. +.++++|+.|+|++|.++ ..... ...+++|+.|+++++ ++. +..+. .+++|+
T Consensus 441 ~~L~~L~Ls~n-~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~Ls~N~l~~--lp~l~-~l~~L~ 511 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPA-LAALRCLEVLQASDNALEN--VDGVA-NLPRLQ 511 (567)
T ss_dssp TTCSEEECTTS-CCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGG-GGGCTTCCEEECCSSCCCC--CGGGT-TCSSCC
T ss_pred cCceEEEecCC-CCCC--CcC-ccccccCcEeecCccccc-ccchh-hhcCCCCCEEECCCCCCCC--CcccC-CCCCCc
Confidence 46899999876 4443 333 678899999999999766 22222 346799999999888 553 22333 789999
Q ss_pred EEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607 143 VLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 178 (250)
Q Consensus 143 ~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~ 178 (250)
.|+|++|.++.......+.++++|+.|+++++..-.
T Consensus 512 ~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred EEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 999988888764313335678999999999987543
No 71
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.20 E-value=1.1e-07 Score=88.81 Aligned_cols=133 Identities=20% Similarity=0.193 Sum_probs=75.5
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCH-HHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhC
Q 025607 36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKK-TGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNC 114 (250)
Q Consensus 36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd-~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c 114 (250)
..+.++.++++++. +++.....+ ..+++|+.|+|+++ .++. ..+...+.++++|+.|++++|.++..........+
T Consensus 351 ~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l 427 (562)
T 3a79_B 351 SPSSFTFLNFTQNV-FTDSVFQGC-STLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA 427 (562)
T ss_dssp SCCCCCEEECCSSC-CCTTTTTTC-CSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC
T ss_pred CCCCceEEECCCCc-cccchhhhh-cccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCc
Confidence 34566777776543 333211111 35677788888765 3432 23334456777788888877755432211122345
Q ss_pred CCCceeEecCC-CCHHHHHHHHhcC-CCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607 115 RNFRELKIMGP-FDLLFASTLNMYL-PKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 177 (250)
Q Consensus 115 ~~L~~L~L~~~-i~d~~~~~i~~~~-~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i 177 (250)
++|++|+++++ +++. +...+ ++|+.|+++.+.++ .+..-+.++++|++|+++++..-
T Consensus 428 ~~L~~L~l~~n~l~~~----~~~~l~~~L~~L~L~~N~l~--~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 428 ESILVLNLSSNMLTGS----VFRCLPPKVKVLDLHNNRIM--SIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp TTCCEEECCSSCCCGG----GGSSCCTTCSEEECCSSCCC--CCCTTTTSSCCCSEEECCSSCCC
T ss_pred ccCCEEECCCCCCCcc----hhhhhcCcCCEEECCCCcCc--ccChhhcCCCCCCEEECCCCCCC
Confidence 77777777776 5532 22233 57777777777776 23222336777888888777544
No 72
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.19 E-value=6.8e-09 Score=97.52 Aligned_cols=88 Identities=22% Similarity=0.175 Sum_probs=45.6
Q ss_pred hcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCC
Q 025607 87 RMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQN 165 (250)
Q Consensus 87 ~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~ 165 (250)
.++++|++|++++|.++...... ...+++|++|+++++ +++.........+++|++|+++++.++.... ..+.++++
T Consensus 421 ~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~ 498 (606)
T 3vq2_A 421 LSLEKLLYLDISYTNTKIDFDGI-FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW-GVFDTLHR 498 (606)
T ss_dssp TTCTTCCEEECTTSCCEECCTTT-TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTT
T ss_pred hccccCCEEECcCCCCCccchhh-hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh-hhhccccc
Confidence 34555555555555433211111 123566666666655 4332111122356777777776666664221 22356777
Q ss_pred CcEEeeeCCCC
Q 025607 166 LEVLNISHCLL 176 (250)
Q Consensus 166 L~~Ldls~C~~ 176 (250)
|++|++++|..
T Consensus 499 L~~L~Ls~N~l 509 (606)
T 3vq2_A 499 LQLLNMSHNNL 509 (606)
T ss_dssp CCEEECCSSCC
T ss_pred CCEEECCCCcC
Confidence 77777777754
No 73
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.19 E-value=1e-07 Score=83.77 Aligned_cols=63 Identities=16% Similarity=0.110 Sum_probs=37.2
Q ss_pred CCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607 114 CRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 178 (250)
Q Consensus 114 c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~ 178 (250)
+++|++|+++++ ++......+. .+++|++|+++.+.++... ..+...+++|++|+++++..-+
T Consensus 173 l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 173 LTFLEELEIDASDLQSYEPKSLK-SIQNVSHLILHMKQHILLL-EIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp CCEEEEEEEEETTCCEECTTTTT-TCSEEEEEEEECSCSTTHH-HHHHHHTTTEEEEEEESCBCTT
T ss_pred CCCCCEEECCCCCcCccCHHHHh-ccccCCeecCCCCccccch-hhhhhhcccccEEECCCCcccc
Confidence 455555555544 3221111222 5677888888777776433 3345568899999999886543
No 74
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.18 E-value=2.3e-08 Score=93.82 Aligned_cols=135 Identities=15% Similarity=0.079 Sum_probs=80.7
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607 37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN 116 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~ 116 (250)
.+.++.|.++++........ .....+++|+.|++++|. ++.. ....+.++++|++|++++|.+++..+......+++
T Consensus 398 l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 474 (606)
T 3vq2_A 398 LEELQHLDFQHSTLKRVTEF-SAFLSLEKLLYLDISYTN-TKID-FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474 (606)
T ss_dssp CTTCCEEECTTSEEESTTTT-TTTTTCTTCCEEECTTSC-CEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred CCCCCeeECCCCccCCccCh-hhhhccccCCEEECcCCC-CCcc-chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCC
Confidence 46777787776542221110 112357888888888764 2211 11235677888888888886655333333345788
Q ss_pred CceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607 117 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL 176 (250)
Q Consensus 117 L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~ 176 (250)
|++|+++++ ++......+ ..+++|++|+++.|.+++.. ...+.++++|+.|++++|..
T Consensus 475 L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 475 LTFLDLSKCQLEQISWGVF-DTLHRLQLLNMSHNNLLFLD-SSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp CCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCSCEE-GGGTTTCTTCCEEECTTSCC
T ss_pred CCEEECCCCcCCccChhhh-cccccCCEEECCCCcCCCcC-HHHccCCCcCCEEECCCCcC
Confidence 888888777 443222222 26778888888777777532 12235677888888888764
No 75
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.18 E-value=1.3e-07 Score=82.33 Aligned_cols=130 Identities=16% Similarity=0.134 Sum_probs=67.8
Q ss_pred CCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHH-HHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607 38 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTG-ICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN 116 (250)
Q Consensus 38 ~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~-l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~ 116 (250)
+.++.|.++++. ++.-. ......+++|+.|+++++. ++..+ ....+.++++|++|++++|.++.-. ....++
T Consensus 121 ~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~----~~~~~~ 193 (330)
T 1xku_A 121 KTLQELRVHENE-ITKVR-KSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITTIP----QGLPPS 193 (330)
T ss_dssp TTCCEEECCSSC-CCBBC-HHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCSCC----SSCCTT
T ss_pred ccccEEECCCCc-ccccC-HhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccccCC----cccccc
Confidence 577888777653 22111 1122457888888888653 33211 1223566777777777777543200 011256
Q ss_pred CceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607 117 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL 176 (250)
Q Consensus 117 L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~ 176 (250)
|++|+++++ ++......+. .+++|++|+++++.+++.... .+.++++|++|++++|..
T Consensus 194 L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l 252 (330)
T 1xku_A 194 LTELHLDGNKITKVDAASLK-GLNNLAKLGLSFNSISAVDNG-SLANTPHLRELHLNNNKL 252 (330)
T ss_dssp CSEEECTTSCCCEECTGGGT-TCTTCCEEECCSSCCCEECTT-TGGGSTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCcCceeChh-hccCCCCCCEEECCCCcC
Confidence 666666665 3322112222 456666666655555542211 124456666666666643
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.17 E-value=6.5e-08 Score=82.01 Aligned_cols=108 Identities=16% Similarity=0.095 Sum_probs=44.0
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCC
Q 025607 62 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK 140 (250)
Q Consensus 62 ~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~ 140 (250)
.+++|++|+|+++. ++.-. ...+.++++|++|++++|.++.-.... ...+++|++|+++++ ++.-....+ ..+++
T Consensus 83 ~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~ 158 (270)
T 2o6q_A 83 ELKNLETLWVTDNK-LQALP-IGVFDQLVNLAELRLDRNQLKSLPPRV-FDSLTKLTYLSLGYNELQSLPKGVF-DKLTS 158 (270)
T ss_dssp SCTTCCEEECCSSC-CCCCC-TTTTTTCSSCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTTT-TTCTT
T ss_pred CCCCCCEEECCCCc-CCcCC-HhHcccccCCCEEECCCCccCeeCHHH-hCcCcCCCEEECCCCcCCccCHhHc-cCCcc
Confidence 34556666655442 22100 012344555555555555332211111 123455555555554 221111111 23455
Q ss_pred ccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCC
Q 025607 141 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHC 174 (250)
Q Consensus 141 L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C 174 (250)
|++|+++.+.++.-.. ..+.++++|++|+++++
T Consensus 159 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 159 LKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNN 191 (270)
T ss_dssp CCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSS
T ss_pred cceeEecCCcCcEeCh-hHhccCCCcCEEECCCC
Confidence 5555554444443111 11233455555555555
No 77
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.16 E-value=1.7e-07 Score=83.41 Aligned_cols=104 Identities=17% Similarity=0.169 Sum_probs=47.7
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCcc
Q 025607 64 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK 142 (250)
Q Consensus 64 ~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~ 142 (250)
++|+.|+++++ .+++. ..+..+++|++|++++|.+++.....+ ..+++|++|+++++ ++.- ......+|+|+
T Consensus 226 ~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~ 298 (390)
T 3o6n_A 226 VELTILKLQHN-NLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPF-VKMQRLERLYISNNRLVAL--NLYGQPIPTLK 298 (390)
T ss_dssp SSCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSSCCCEEESGGG-TTCSSCCEEECCSSCCCEE--ECSSSCCTTCC
T ss_pred ccccEEECCCC-CCccc---HHHcCCCCccEEECCCCcCCCcChhHc-cccccCCEEECCCCcCccc--CcccCCCCCCC
Confidence 45666666654 23321 234555666666666655443222122 23455666666555 3210 00112455566
Q ss_pred EEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607 143 VLSLRCTTLNRDALILILDGLQNLEVLNISHCLL 176 (250)
Q Consensus 143 ~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~ 176 (250)
+|+++++.++. +..-...+++|++|++++|..
T Consensus 299 ~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 299 VLDLSHNHLLH--VERNQPQFDRLENLYLDHNSI 330 (390)
T ss_dssp EEECCSSCCCC--CGGGHHHHTTCSEEECCSSCC
T ss_pred EEECCCCccee--cCccccccCcCCEEECCCCcc
Confidence 66665555542 111123345555555555543
No 78
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.16 E-value=1.9e-08 Score=94.44 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=19.8
Q ss_pred cCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607 137 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 175 (250)
Q Consensus 137 ~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~ 175 (250)
.+++|+.|+++++.++..... .+.++++|++|++++|.
T Consensus 474 ~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 474 TLGRLEILVLSFCDLSSIDQH-AFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp GCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSC
T ss_pred cCCCccEEECCCCccCccChh-hhccccCCCEEECCCCc
Confidence 455666666655555432111 12445666666666664
No 79
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.15 E-value=9.6e-08 Score=79.24 Aligned_cols=131 Identities=14% Similarity=0.077 Sum_probs=70.4
Q ss_pred CCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCC
Q 025607 38 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF 117 (250)
Q Consensus 38 ~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L 117 (250)
++++.|+++++. ++.-. ......+++|+.|+|+++. ++.-. ...+.++++|+.|+|++|.++.-. ......+++|
T Consensus 40 ~~L~~L~Ls~n~-i~~~~-~~~~~~l~~L~~L~L~~N~-l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L 114 (229)
T 3e6j_A 40 TNAQILYLHDNQ-ITKLE-PGVFDSLINLKELYLGSNQ-LGALP-VGVFDSLTQLTVLDLGTNQLTVLP-SAVFDRLVHL 114 (229)
T ss_dssp TTCSEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTC
T ss_pred CCCCEEEcCCCc-cCccC-HHHhhCccCCcEEECCCCC-CCCcC-hhhcccCCCcCEEECCCCcCCccC-hhHhCcchhh
Confidence 456667666543 22100 0112346777777777653 32110 012456777777777777554211 1112346777
Q ss_pred ceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607 118 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL 176 (250)
Q Consensus 118 ~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~ 176 (250)
++|+++++ ++. .-..+ ..+++|+.|+|+.|.++.-.- ..+..+++|+.|+++++..
T Consensus 115 ~~L~Ls~N~l~~-lp~~~-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 115 KELFMCCNKLTE-LPRGI-ERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CEEECCSSCCCS-CCTTG-GGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCB
T ss_pred CeEeccCCcccc-cCccc-ccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCCc
Confidence 77777766 431 00112 367777777777676663211 2345577777777777653
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.15 E-value=1.1e-07 Score=80.57 Aligned_cols=134 Identities=16% Similarity=0.123 Sum_probs=88.7
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607 37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN 116 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~ 116 (250)
.++++.|+++++. ++.- .......+++|+.|+|+++. ++... ...+..+++|++|++++|.++.-.. .....+++
T Consensus 84 l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~ 158 (270)
T 2o6q_A 84 LKNLETLWVTDNK-LQAL-PIGVFDQLVNLAELRLDRNQ-LKSLP-PRVFDSLTKLTYLSLGYNELQSLPK-GVFDKLTS 158 (270)
T ss_dssp CTTCCEEECCSSC-CCCC-CTTTTTTCSSCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTT
T ss_pred CCCCCEEECCCCc-CCcC-CHhHcccccCCCEEECCCCc-cCeeC-HHHhCcCcCCCEEECCCCcCCccCH-hHccCCcc
Confidence 4678888887654 2210 01122468999999999763 33211 1235688999999999996653221 11245799
Q ss_pred CceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607 117 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 177 (250)
Q Consensus 117 L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i 177 (250)
|++|+++++ ++.-....+ ..+++|++|+++.+.++.-. ...+..+++|+.|++++++-.
T Consensus 159 L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 159 LKELRLYNNQLKRVPEGAF-DKLTELKTLKLDNNQLKRVP-EGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCEEECCSSCCSCCCTTTT-TTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBC
T ss_pred cceeEecCCcCcEeChhHh-ccCCCcCEEECCCCcCCcCC-HHHhccccCCCEEEecCCCee
Confidence 999999987 443221122 36899999999888887422 123467899999999998743
No 81
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.14 E-value=4.2e-08 Score=85.18 Aligned_cols=133 Identities=14% Similarity=0.109 Sum_probs=96.0
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607 37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN 116 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~ 116 (250)
.+.++.|+++++. +++.....+...+++|+.|+|+++. ++.. .....+++|++|++++|.++.-.. . ...+++
T Consensus 143 l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~---~~~~~l~~L~~L~Ls~N~l~~l~~-~-~~~l~~ 215 (317)
T 3o53_A 143 RSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNF-IYDV---KGQVVFAKLKTLDLSSNKLAFMGP-E-FQSAAG 215 (317)
T ss_dssp GSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSC-CCEE---ECCCCCTTCCEEECCSSCCCEECG-G-GGGGTT
T ss_pred cCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCc-Cccc---ccccccccCCEEECCCCcCCcchh-h-hcccCc
Confidence 4678888888753 4443344445568999999999874 4432 112248999999999997763211 1 346799
Q ss_pred CceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607 117 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 178 (250)
Q Consensus 117 L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~ 178 (250)
|++|+++++ ++. +......+++|+.|++++|.++...+...+..+++|+.|+++++..++
T Consensus 216 L~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 216 VTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp CSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ccEEECcCCcccc--hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 999999988 542 111124789999999999999977788888899999999988776554
No 82
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.13 E-value=1.5e-07 Score=87.93 Aligned_cols=134 Identities=12% Similarity=0.106 Sum_probs=92.0
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCC
Q 025607 36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR 115 (250)
Q Consensus 36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~ 115 (250)
..+.++.|+++.+..-.-..+......+++|+.|+|+++. ++...-...+..+++|++|++++|.+++.....+. +
T Consensus 375 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~---~ 450 (562)
T 3a79_B 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP---P 450 (562)
T ss_dssp SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC---T
T ss_pred ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhhcCcccCCEEECCCCCCCcchhhhhc---C
Confidence 3567889999876433222233333578999999999874 33211111345779999999999988764433221 7
Q ss_pred CCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHH-HHhcCCCCcEEeeeCCCCc
Q 025607 116 NFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALIL-ILDGLQNLEVLNISHCLLI 177 (250)
Q Consensus 116 ~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~-i~~~c~~L~~Ldls~C~~i 177 (250)
+|+.|+++++ ++. .-..+. .+++|++|++++|.++. +.. .+..+++|+.|++++++-.
T Consensus 451 ~L~~L~L~~N~l~~-ip~~~~-~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 451 KVKVLDLHNNRIMS-IPKDVT-HLQALQELNVASNQLKS--VPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp TCSEEECCSSCCCC-CCTTTT-SSCCCSEEECCSSCCCC--CCTTSTTTCTTCCCEECCSCCBC
T ss_pred cCCEEECCCCcCcc-cChhhc-CCCCCCEEECCCCCCCC--CCHHHHhcCCCCCEEEecCCCcC
Confidence 9999999988 551 111223 78999999998898883 332 2567899999999998754
No 83
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.12 E-value=2.2e-07 Score=90.21 Aligned_cols=62 Identities=13% Similarity=0.015 Sum_probs=25.6
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHH--HHHHhcCCCCCEEEecCC
Q 025607 37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGI--CKAIRMWRDLESLTMPSI 100 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l--~~~~~~c~~L~~L~Ls~c 100 (250)
.++++.|+++++... ......+...+++|++|+|+++. ++.... ...+.++++|++|++++|
T Consensus 125 l~~L~~L~Ls~n~l~-~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n 188 (768)
T 3rgz_A 125 CSGLKFLNVSSNTLD-FPGKVSGGLKLNSLEVLDLSANS-ISGANVVGWVLSDGCGELKHLAISGN 188 (768)
T ss_dssp CTTCCEEECCSSEEE-CCSSCCSCCCCTTCSEEECCSSC-CEEETHHHHHHTTCCTTCCEEECCSS
T ss_pred CCCCCEEECcCCccC-CcCCHHHhccCCCCCEEECCCCc-cCCcCChhhhhhccCCCCCEEECCCC
Confidence 456666666554221 10000111244556666665542 221111 112344555555555554
No 84
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.12 E-value=1.7e-07 Score=85.61 Aligned_cols=84 Identities=17% Similarity=0.080 Sum_probs=35.4
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607 37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN 116 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~ 116 (250)
.++++.|+++.+. +++-.-.. ...+++|++|+|+++ .++.-. ...+.++++|++|+|++|.++......+ ..+++
T Consensus 55 l~~L~~L~L~~n~-i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~ 129 (477)
T 2id5_A 55 FPHLEELELNENI-VSAVEPGA-FNNLFNLRTLGLRSN-RLKLIP-LGVFTGLSNLTKLDISENKIVILLDYMF-QDLYN 129 (477)
T ss_dssp CTTCCEEECTTSC-CCEECTTT-TTTCTTCCEEECCSS-CCCSCC-TTSSTTCTTCCEEECTTSCCCEECTTTT-TTCTT
T ss_pred CCCCCEEECCCCc-cCEeChhh-hhCCccCCEEECCCC-cCCccC-cccccCCCCCCEEECCCCccccCChhHc-ccccc
Confidence 3456666665442 22110001 124566666666654 222110 0123445566666666554432111111 23455
Q ss_pred CceeEecCC
Q 025607 117 FRELKIMGP 125 (250)
Q Consensus 117 L~~L~L~~~ 125 (250)
|++|+++++
T Consensus 130 L~~L~l~~n 138 (477)
T 2id5_A 130 LKSLEVGDN 138 (477)
T ss_dssp CCEEEECCT
T ss_pred CCEEECCCC
Confidence 555555443
No 85
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.12 E-value=3.3e-07 Score=90.39 Aligned_cols=131 Identities=11% Similarity=0.001 Sum_probs=68.8
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHH-------hcCCCCCEEEecCCCCCHHHHH-
Q 025607 37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAI-------RMWRDLESLTMPSIANPPYLME- 108 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~-------~~c~~L~~L~Ls~c~~~d~~l~- 108 (250)
.++++.|+++.+..... .- .....+++|+.|+|+++..++...+...+ ..+++|+.|++++|.++ ....
T Consensus 490 L~~L~~L~Ls~N~l~~~-iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~ 566 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQ-LP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPAS 566 (876)
T ss_dssp CTTCCEEEEESCTTCCS-CC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCH
T ss_pred CCCCCEEECcCCCCCcc-Ch-HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCCh
Confidence 45677777766542221 11 11235677777777766446552222222 23457777777777655 2211
Q ss_pred HHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCC-CcEEeeeCCC
Q 025607 109 EIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQN-LEVLNISHCL 175 (250)
Q Consensus 109 ~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~-L~~Ldls~C~ 175 (250)
.....+++|+.|+++++ ++ .+..+ ..+++|+.|+|+.+.++ .+..-+.++++ |+.|++++|.
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~--~lp~~-~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVR--HLEAF-GTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCC--BCCCC-CTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSC
T ss_pred hhhhcCCCCCEEECCCCCcc--cchhh-cCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCC
Confidence 02234677777777766 44 11122 24566666666666655 23322344555 6666666664
No 86
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.11 E-value=1.4e-07 Score=76.70 Aligned_cols=110 Identities=16% Similarity=0.081 Sum_probs=76.5
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCc
Q 025607 63 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL 141 (250)
Q Consensus 63 c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L 141 (250)
.++|++|+++++ .++.. ....+.++++|++|+++++.++.-. ......+++|++|+++++ ++.-.. .....+++|
T Consensus 27 ~~~l~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L 102 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSL-PNGVFDELTSLTQLYLGGNKLQSLP-NGVFNKLTSLTYLNLSTNQLQSLPN-GVFDKLTQL 102 (208)
T ss_dssp CTTCSEEECCSS-CCCCC-CTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred CCCCcEEEcCCC-ccCcC-ChhhhcccccCcEEECCCCccCccC-hhhcCCCCCcCEEECCCCcCCccCH-hHhcCccCC
Confidence 468999999987 44421 1123578899999999999765321 122346799999999988 542111 112378999
Q ss_pred cEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607 142 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 177 (250)
Q Consensus 142 ~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i 177 (250)
++|+++.+.++... ...+.++++|++|+++++..-
T Consensus 103 ~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 103 KELALNTNQLQSLP-DGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp CEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCS
T ss_pred CEEEcCCCcCcccC-HhHhccCCcCCEEECCCCccc
Confidence 99999888887422 123467899999999998543
No 87
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.11 E-value=7.5e-08 Score=93.50 Aligned_cols=135 Identities=16% Similarity=0.221 Sum_probs=66.9
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCH-----------
Q 025607 36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPP----------- 104 (250)
Q Consensus 36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d----------- 104 (250)
..++++.|+++++..... +.. ...+++|++|+|+++. ++.. +...+.++++|++|++++|.++.
T Consensus 198 ~l~~L~~L~Ls~n~l~~~--~~~-l~~l~~L~~L~Ls~n~-l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~ 272 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTG--IPF-LGDCSALQHLDISGNK-LSGD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQ 272 (768)
T ss_dssp TCTTCCEEECCSSCCCSC--CCB-CTTCCSCCEEECCSSC-CCSC-HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCC
T ss_pred cCCcCCEEECcCCcCCCC--Ccc-cccCCCCCEEECcCCc-CCCc-ccHHHhcCCCCCEEECCCCcccCccCccccCCCC
Confidence 356677777766543220 011 2356677777777653 3321 22344566666666666664321
Q ss_pred -----------HHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeee
Q 025607 105 -----------YLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNIS 172 (250)
Q Consensus 105 -----------~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls 172 (250)
.....+...|++|++|+++++ ++......+ ..+++|++|++..+.++..--...+.++++|++|+++
T Consensus 273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls 351 (768)
T 3rgz_A 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF-GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351 (768)
T ss_dssp EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG-GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC
T ss_pred EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH-hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc
Confidence 112222233455666666555 221111112 2566777777755554421112224456777777777
Q ss_pred CCCC
Q 025607 173 HCLL 176 (250)
Q Consensus 173 ~C~~ 176 (250)
+|..
T Consensus 352 ~n~l 355 (768)
T 3rgz_A 352 FNEF 355 (768)
T ss_dssp SSEE
T ss_pred CCcc
Confidence 7653
No 88
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.11 E-value=5.7e-07 Score=88.73 Aligned_cols=133 Identities=10% Similarity=0.027 Sum_probs=95.7
Q ss_pred CCCccEEEecCCCCCCHH-----------------HHHHH-HhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEec
Q 025607 37 RGSIRTLIFHFNLYVSDD-----------------QLTYT-AERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMP 98 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d~-----------------~L~~i-~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls 98 (250)
.++++.|+++++. ++.+ .-..+ ...+++|+.|+|++|..... +...+.++++|+.|+|+
T Consensus 447 L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~--iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 447 LTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ--LPDFLYDLPELQSLNIA 523 (876)
T ss_dssp CTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS--CCGGGGGCSSCCEEECT
T ss_pred CCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc--ChHHHhCCCCCCEEECc
Confidence 4678899988765 4441 11222 12689999999998853331 22456789999999999
Q ss_pred CCC-CCH-HHHHHHHH------hCCCCceeEecCC-CCHHHHHH--HHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCc
Q 025607 99 SIA-NPP-YLMEEIAQ------NCRNFRELKIMGP-FDLLFAST--LNMYLPKLKVLSLRCTTLNRDALILILDGLQNLE 167 (250)
Q Consensus 99 ~c~-~~d-~~l~~i~~------~c~~L~~L~L~~~-i~d~~~~~--i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~ 167 (250)
+|. ++. .....++. .+|+|+.|+++++ ++ .+.. ....+++|+.|+|+.+.++ .+. .+..+++|+
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp-~~~~L~~L~ 598 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKVR--HLE-AFGTNVKLT 598 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCCC--BCC-CCCTTSEES
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCcc--cch-hhcCCCcce
Confidence 996 887 55444543 4579999999998 65 2222 2238999999999888888 444 456789999
Q ss_pred EEeeeCCCCc
Q 025607 168 VLNISHCLLI 177 (250)
Q Consensus 168 ~Ldls~C~~i 177 (250)
.|+++++..-
T Consensus 599 ~L~Ls~N~l~ 608 (876)
T 4ecn_A 599 DLKLDYNQIE 608 (876)
T ss_dssp EEECCSSCCS
T ss_pred EEECcCCccc
Confidence 9999999754
No 89
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.10 E-value=9.6e-08 Score=89.63 Aligned_cols=153 Identities=12% Similarity=0.067 Sum_probs=101.0
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHH--HHHHhC
Q 025607 37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLME--EIAQNC 114 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~--~i~~~c 114 (250)
.+.++.|+++++... ..........+++|+.|+++++. ++.. ....+.++++|++|++++|.+++..+. .....+
T Consensus 399 l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l 475 (606)
T 3t6q_A 399 CPQLELLDLAFTRLK-VKDAQSPFQNLHLLKVLNLSHSL-LDIS-SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475 (606)
T ss_dssp CTTCSEEECTTCCEE-CCTTCCTTTTCTTCCEEECTTCC-CBTT-CTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC
T ss_pred CccCCeEECCCCcCC-CcccchhhhCcccCCEEECCCCc-cCCc-CHHHHhCCCCCCEEECCCCCCCccccccchhhccC
Confidence 567889988776432 11111123468899999999874 3321 123356789999999999977653221 123568
Q ss_pred CCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCCCCCCChhHHHhhhh
Q 025607 115 RNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDVPLAPAPKKIIKKLD 193 (250)
Q Consensus 115 ~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~~~~~~~~~~i~~~~ 193 (250)
++|++|+++++ ++......+. .+++|++|+++++.++...... +.+++.| +|++++|..-.. .
T Consensus 476 ~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~-l~~l~~L-~L~L~~N~l~~~-------------~ 539 (606)
T 3t6q_A 476 GRLEILVLSFCDLSSIDQHAFT-SLKMMNHVDLSHNRLTSSSIEA-LSHLKGI-YLNLASNHISII-------------L 539 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCGGGGGG-GTTCCSC-EEECCSSCCCCC-------------C
T ss_pred CCccEEECCCCccCccChhhhc-cccCCCEEECCCCccCcCChhH-hCccccc-EEECcCCccccc-------------C
Confidence 99999999988 5432222333 7899999999989998765443 4578889 999999965432 1
Q ss_pred HHHHHHHHhhhhhhc
Q 025607 194 RTILQKAARLRKFLT 208 (250)
Q Consensus 194 ~~i~~~~~~L~~l~~ 208 (250)
...+...++|+.+..
T Consensus 540 ~~~~~~l~~L~~L~l 554 (606)
T 3t6q_A 540 PSLLPILSQQRTINL 554 (606)
T ss_dssp GGGHHHHHTSSEEEC
T ss_pred HhhcccCCCCCEEeC
Confidence 334455667777543
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.10 E-value=2.3e-07 Score=77.70 Aligned_cols=134 Identities=17% Similarity=0.124 Sum_probs=86.3
Q ss_pred CCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCC
Q 025607 38 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF 117 (250)
Q Consensus 38 ~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L 117 (250)
..++.|+++++.. +.-.-. ....+++|++|+|+++ .++.. ....+..+++|+.|++++|.++.-.. .....+++|
T Consensus 35 ~~l~~L~L~~n~l-~~~~~~-~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L 109 (251)
T 3m19_A 35 ADTEKLDLQSTGL-ATLSDA-TFRGLTKLTWLNLDYN-QLQTL-SAGVFDDLTELGTLGLANNQLASLPL-GVFDHLTQL 109 (251)
T ss_dssp TTCCEEECTTSCC-CCCCTT-TTTTCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTC
T ss_pred CCCCEEEccCCCc-CccCHh-HhcCcccCCEEECCCC-cCCcc-CHhHhccCCcCCEEECCCCcccccCh-hHhcccCCC
Confidence 4677787776542 211111 1235789999999976 44431 11235678999999999997653221 122467999
Q ss_pred ceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607 118 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 178 (250)
Q Consensus 118 ~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~ 178 (250)
++|+++++ ++.-.. .....+++|++|+|+++.++.-.- ..+.++++|++|+++++..-.
T Consensus 110 ~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 110 DKLYLGGNQLKSLPS-GVFDRLTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSC
T ss_pred CEEEcCCCcCCCcCh-hHhccCCcccEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCCc
Confidence 99999887 542111 112368999999998888874221 134578999999999996543
No 91
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.10 E-value=1.6e-07 Score=81.64 Aligned_cols=127 Identities=16% Similarity=0.145 Sum_probs=65.6
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHH-HHHHHHhCC
Q 025607 37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYL-MEEIAQNCR 115 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~-l~~i~~~c~ 115 (250)
.++++.|+++++. ++. +. ....++|+.|+++++ .++... ...+.++++|+.|++++|.++... .......++
T Consensus 99 l~~L~~L~Ls~n~-l~~--l~--~~~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 171 (330)
T 1xku_A 99 LVKLERLYLSKNQ-LKE--LP--EKMPKTLQELRVHEN-EITKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171 (330)
T ss_dssp CTTCCEEECCSSC-CSB--CC--SSCCTTCCEEECCSS-CCCBBC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT
T ss_pred CCCCCEEECCCCc-CCc--cC--hhhcccccEEECCCC-cccccC-HhHhcCCccccEEECCCCcCCccCcChhhccCCC
Confidence 3466666666543 210 00 011256777777665 233211 123456677777777777554311 111223467
Q ss_pred CCceeEecCC-CCHHHHHHHH-hcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607 116 NFRELKIMGP-FDLLFASTLN-MYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL 176 (250)
Q Consensus 116 ~L~~L~L~~~-i~d~~~~~i~-~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~ 176 (250)
+|++|+++++ ++. +. ...++|++|+++++.++..... .+.++++|++|+++++..
T Consensus 172 ~L~~L~l~~n~l~~-----l~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l 228 (330)
T 1xku_A 172 KLSYIRIADTNITT-----IPQGLPPSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSI 228 (330)
T ss_dssp TCCEEECCSSCCCS-----CCSSCCTTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCC
T ss_pred CcCEEECCCCcccc-----CCccccccCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcC
Confidence 7777777665 331 10 1235777777766666643222 234567777777777653
No 92
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.09 E-value=8.9e-08 Score=86.80 Aligned_cols=130 Identities=18% Similarity=0.216 Sum_probs=58.9
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607 37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN 116 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~ 116 (250)
.++++.|+++++. ++.- -......+++|+.|+|++++.++.-.- ..+.++++|++|++++|.++.- .. ...+++
T Consensus 135 l~~L~~L~L~~N~-i~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~ 208 (440)
T 3zyj_A 135 LSKLKELWLRNNP-IESI-PSYAFNRIPSLRRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMCNLREI--PN-LTPLIK 208 (440)
T ss_dssp CSSCCEEECCSCC-CCEE-CTTTTTTCTTCCEEECCCCTTCCEECT-TTTTTCSSCCEEECTTSCCSSC--CC-CTTCSS
T ss_pred cccCceeeCCCCc-cccc-CHHHhhhCcccCEeCCCCCCCcceeCc-chhhcccccCeecCCCCcCccc--cc-cCCCcc
Confidence 3567777776553 2210 001123466777777776654432110 1244566666666666644311 01 233456
Q ss_pred CceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCC
Q 025607 117 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHC 174 (250)
Q Consensus 117 L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C 174 (250)
|++|+++++ ++......+ ..+++|++|++..+.++..... .+.++++|++|+++++
T Consensus 209 L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 209 LDELDLSGNHLSAIRPGSF-QGLMHLQKLWMIQSQIQVIERN-AFDNLQSLVEINLAHN 265 (440)
T ss_dssp CCEEECTTSCCCEECTTTT-TTCTTCCEEECTTCCCCEECTT-SSTTCTTCCEEECTTS
T ss_pred cCEEECCCCccCccChhhh-ccCccCCEEECCCCceeEEChh-hhcCCCCCCEEECCCC
Confidence 666666555 322111111 1445555555544444432111 1233445555555544
No 93
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.08 E-value=2.6e-07 Score=87.88 Aligned_cols=111 Identities=9% Similarity=0.093 Sum_probs=69.2
Q ss_pred CCCccEEEecCCCCCCHH-----------------HHHHHH-hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEec
Q 025607 37 RGSIRTLIFHFNLYVSDD-----------------QLTYTA-ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMP 98 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d~-----------------~L~~i~-~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls 98 (250)
.++++.|+++++. ++.. .-..++ ..+++|++|+|++|.... .+...+.++++|++|+++
T Consensus 205 l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 205 LTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT--KLPTFLKALPEMQLINVA 281 (636)
T ss_dssp CTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS--SCCTTTTTCSSCCEEECT
T ss_pred ccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc--cChHHHhcCCCCCEEECc
Confidence 4577888887765 4442 111111 257888888888774332 122345678888888888
Q ss_pred CCC-CCH-HHHHHHHH-----hCCCCceeEecCC-CCHHHHH--HHHhcCCCccEEEeecCCCC
Q 025607 99 SIA-NPP-YLMEEIAQ-----NCRNFRELKIMGP-FDLLFAS--TLNMYLPKLKVLSLRCTTLN 152 (250)
Q Consensus 99 ~c~-~~d-~~l~~i~~-----~c~~L~~L~L~~~-i~d~~~~--~i~~~~~~L~~L~L~~~~it 152 (250)
+|. ++. .....++. .+++|++|+++++ ++ .... .+. .+++|++|+++.+.++
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~-~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ-KMKKLGMLECLYNQLE 343 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT-TCTTCCEEECCSCCCE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc-cCCCCCEEeCcCCcCc
Confidence 886 776 55555554 3588888888877 55 1111 233 6777888887666665
No 94
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.08 E-value=1.5e-07 Score=74.52 Aligned_cols=110 Identities=15% Similarity=0.100 Sum_probs=75.7
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCc
Q 025607 63 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL 141 (250)
Q Consensus 63 c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L 141 (250)
.++|+.|+++++ .++.. ....+.++++|++|++++|.++.-. ......+++|++|+++++ ++.-... ....+++|
T Consensus 27 ~~~l~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L 102 (177)
T 2o6r_A 27 PSSATRLELESN-KLQSL-PHGVFDKLTQLTKLSLSQNQIQSLP-DGVFDKLTKLTILYLHENKLQSLPNG-VFDKLTQL 102 (177)
T ss_dssp CTTCSEEECCSS-CCCCC-CTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTC
T ss_pred CCCCcEEEeCCC-cccEe-CHHHhcCcccccEEECCCCcceEeC-hhHccCCCccCEEECCCCCccccCHH-HhhCCccc
Confidence 468999999976 34421 1123577899999999999765321 112246799999999988 5421111 22368999
Q ss_pred cEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607 142 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 177 (250)
Q Consensus 142 ~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i 177 (250)
++|+++.+.++.-. ..+...+++|++|+++++...
T Consensus 103 ~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 103 KELALDTNQLKSVP-DGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBC
T ss_pred CEEECcCCcceEeC-HHHhcCCcccCEEEecCCCee
Confidence 99999888887321 233467899999999998654
No 95
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.08 E-value=1.3e-07 Score=86.11 Aligned_cols=130 Identities=21% Similarity=0.241 Sum_probs=60.3
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607 37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN 116 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~ 116 (250)
.++++.|+++++. ++. .-......+++|+.|+|++|+.++.-.- ..+.++++|+.|++++|.+++- .. ...+++
T Consensus 146 l~~L~~L~L~~N~-l~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~ 219 (452)
T 3zyi_A 146 LSKLRELWLRNNP-IES-IPSYAFNRVPSLMRLDLGELKKLEYISE-GAFEGLFNLKYLNLGMCNIKDM--PN-LTPLVG 219 (452)
T ss_dssp CTTCCEEECCSCC-CCE-ECTTTTTTCTTCCEEECCCCTTCCEECT-TTTTTCTTCCEEECTTSCCSSC--CC-CTTCTT
T ss_pred cCCCCEEECCCCC-cce-eCHhHHhcCCcccEEeCCCCCCccccCh-hhccCCCCCCEEECCCCccccc--cc-cccccc
Confidence 4567777776653 221 0011123567777777776655432110 1234566666666666644321 11 123456
Q ss_pred CceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCC
Q 025607 117 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHC 174 (250)
Q Consensus 117 L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C 174 (250)
|++|+++++ ++......+. .+++|+.|++..+.++..... .+.++++|++|+++++
T Consensus 220 L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 220 LEELEMSGNHFPEIRPGSFH-GLSSLKKLWVMNSQVSLIERN-AFDGLASLVELNLAHN 276 (452)
T ss_dssp CCEEECTTSCCSEECGGGGT-TCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSS
T ss_pred ccEEECcCCcCcccCccccc-CccCCCEEEeCCCcCceECHH-HhcCCCCCCEEECCCC
Confidence 666666555 3221111121 445555555544444432111 1234455555555554
No 96
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.08 E-value=7.6e-08 Score=82.84 Aligned_cols=109 Identities=22% Similarity=0.219 Sum_probs=56.9
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCC
Q 025607 62 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK 140 (250)
Q Consensus 62 ~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~ 140 (250)
..++|+.|+|+++ .++ .+...+..+++|+.|++++|.++.-.... ...+++|++|+++++ ++.-.. .+...+++
T Consensus 75 ~l~~L~~L~Ls~N-~l~--~l~~~~~~l~~L~~L~l~~N~l~~l~~~~-~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~ 149 (290)
T 1p9a_G 75 TLPVLGTLDLSHN-QLQ--SLPLLGQTLPALTVLDVSFNRLTSLPLGA-LRGLGELQELYLKGNELKTLPP-GLLTPTPK 149 (290)
T ss_dssp CCTTCCEEECCSS-CCS--SCCCCTTTCTTCCEEECCSSCCCCCCSST-TTTCTTCCEEECTTSCCCCCCT-TTTTTCTT
T ss_pred CCCcCCEEECCCC-cCC--cCchhhccCCCCCEEECCCCcCcccCHHH-HcCCCCCCEEECCCCCCCccCh-hhcccccC
Confidence 4566666666654 332 12223455667777777776544211111 134567777777666 331111 11125667
Q ss_pred ccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607 141 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL 176 (250)
Q Consensus 141 L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~ 176 (250)
|+.|+|+.|.++.-. ..+..++++|++|+++++..
T Consensus 150 L~~L~L~~N~l~~l~-~~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 150 LEKLSLANNNLTELP-AGLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp CCEEECTTSCCSCCC-TTTTTTCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccC-HHHhcCcCCCCEEECCCCcC
Confidence 777777666665211 12234567777777776654
No 97
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.05 E-value=1.5e-07 Score=92.35 Aligned_cols=135 Identities=16% Similarity=0.080 Sum_probs=69.5
Q ss_pred CCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCC
Q 025607 38 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF 117 (250)
Q Consensus 38 ~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L 117 (250)
+.++.|+++++. ++.-.... ...+++|+.|+|+++..+..-. ...+.++++|+.|+|++|.++......+ ..+++|
T Consensus 24 ~~l~~LdLs~N~-i~~i~~~~-~~~l~~L~~LdLs~n~~~~~i~-~~~f~~L~~L~~L~Ls~N~l~~~~p~~~-~~l~~L 99 (844)
T 3j0a_A 24 NTTERLLLSFNY-IRTVTASS-FPFLEQLQLLELGSQYTPLTID-KEAFRNLPNLRILDLGSSKIYFLHPDAF-QGLFHL 99 (844)
T ss_dssp TTCCEEEEESCC-CCEECSSS-CSSCCSCSEEEECTTCCCCEEC-TTTTSSCTTCCEEECTTCCCCEECTTSS-CSCSSC
T ss_pred CCcCEEECCCCc-CCccChhH-CcccccCeEEeCCCCCCccccC-HHHhcCCCCCCEEECCCCcCcccCHhHc-cCCccc
Confidence 456666666543 22110001 1346677777777663322100 1224566777777777765543222222 245677
Q ss_pred ceeEecCC-CCHHHHHH-HHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607 118 RELKIMGP-FDLLFAST-LNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL 176 (250)
Q Consensus 118 ~~L~L~~~-i~d~~~~~-i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~ 176 (250)
++|+++++ +++..... ....+++|++|+|+.|.++.......+.++++|++|+++++..
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 77777666 43321111 1125667777777666665433333345667777777776643
No 98
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.05 E-value=1.2e-07 Score=87.46 Aligned_cols=59 Identities=14% Similarity=0.055 Sum_probs=29.9
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCC
Q 025607 37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIA 101 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~ 101 (250)
.++++.|+++++. +++-.... ...+++|+.|+|+++. ++... . +..+++|+.|+|++|.
T Consensus 33 ~~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~~--~-l~~l~~L~~L~Ls~N~ 91 (487)
T 3oja_A 33 AWNVKELDLSGNP-LSQISAAD-LAPFTKLELLNLSSNV-LYETL--D-LESLSTLRTLDLNNNY 91 (487)
T ss_dssp GGGCCEEECCSSC-CCCCCGGG-GTTCTTCCEEECTTSC-CEEEE--E-CTTCTTCCEEECCSSE
T ss_pred CCCccEEEeeCCc-CCCCCHHH-HhCCCCCCEEEeeCCC-CCCCc--c-cccCCCCCEEEecCCc
Confidence 3467777776653 22211111 1356777777777653 32110 0 4455666666665553
No 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.05 E-value=3e-07 Score=76.24 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=77.0
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCc
Q 025607 63 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL 141 (250)
Q Consensus 63 c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L 141 (250)
.++|+.|+|+++ .++.. ....+.++++|++|+|++|.++.-. ......+++|+.|+++++ ++.-.. .....+++|
T Consensus 39 ~~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L 114 (229)
T 3e6j_A 39 PTNAQILYLHDN-QITKL-EPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQLTVLPS-AVFDRLVHL 114 (229)
T ss_dssp CTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred CCCCCEEEcCCC-ccCcc-CHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCcCCccCh-hHhCcchhh
Confidence 378999999986 34321 1123578899999999999664211 122246799999999988 542111 122378999
Q ss_pred cEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607 142 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 177 (250)
Q Consensus 142 ~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i 177 (250)
+.|+|+++.++ .+..-+.++++|++|+++++..-
T Consensus 115 ~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 115 KELFMCCNKLT--ELPRGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp CEEECCSSCCC--SCCTTGGGCTTCSEEECCSSCCC
T ss_pred CeEeccCCccc--ccCcccccCCCCCEEECCCCcCC
Confidence 99999999988 34333478999999999998543
No 100
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.05 E-value=2.7e-07 Score=74.64 Aligned_cols=109 Identities=15% Similarity=0.130 Sum_probs=76.4
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCc
Q 025607 63 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL 141 (250)
Q Consensus 63 c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L 141 (250)
.++|+.|+|++. .++. +...+.++++|+.|++++|.++.-....+ ..+++|++|+++++ ++.-...++ ..+++|
T Consensus 30 ~~~l~~L~L~~n-~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f-~~l~~L~~L~Ls~N~l~~i~~~~f-~~l~~L 104 (193)
T 2wfh_A 30 PRDVTELYLDGN-QFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSF-SNMTQLLTLILSYNRLRCIPPRTF-DGLKSL 104 (193)
T ss_dssp CTTCCEEECCSS-CCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCBCCTTTT-TTCTTC
T ss_pred CCCCCEEECCCC-cCch--hHHHhhcccCCCEEECCCCcCCEeCHhHc-cCCCCCCEEECCCCccCEeCHHHh-CCCCCC
Confidence 368999999976 4542 22457889999999999997653222222 35799999999987 443221223 378999
Q ss_pred cEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607 142 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 177 (250)
Q Consensus 142 ~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i 177 (250)
+.|+|+.|.++.-. ......+++|+.|++++..-.
T Consensus 105 ~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 105 RLLSLHGNDISVVP-EGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CEEECCSSCCCBCC-TTTTTTCTTCCEEECCSSCEE
T ss_pred CEEECCCCCCCeeC-hhhhhcCccccEEEeCCCCee
Confidence 99999888887421 123456899999999987654
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.05 E-value=1.9e-07 Score=77.04 Aligned_cols=133 Identities=16% Similarity=0.149 Sum_probs=80.5
Q ss_pred CCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCC
Q 025607 38 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF 117 (250)
Q Consensus 38 ~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L 117 (250)
..++.|.++++. ++.-. ......+++|+.|+|+++ .++.. ....+.++++|+.|+|++|.++.- ...+...+++|
T Consensus 32 ~~l~~L~l~~n~-i~~i~-~~~~~~l~~L~~L~Ls~N-~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L 106 (220)
T 2v9t_B 32 ETITEIRLEQNT-IKVIP-PGAFSPYKKLRRIDLSNN-QISEL-APDAFQGLRSLNSLVLYGNKITEL-PKSLFEGLFSL 106 (220)
T ss_dssp TTCCEEECCSSC-CCEEC-TTSSTTCTTCCEEECCSS-CCCEE-CTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred cCCCEEECCCCc-CCCcC-HhHhhCCCCCCEEECCCC-cCCCc-CHHHhhCCcCCCEEECCCCcCCcc-CHhHccCCCCC
Confidence 456777776543 22100 001235678899998876 34321 012356778899999988866521 11222457889
Q ss_pred ceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607 118 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 177 (250)
Q Consensus 118 ~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i 177 (250)
+.|+++++ ++.-....+. .+++|+.|+|+.|.++.-.- ..+..+++|++|++++..-.
T Consensus 107 ~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 107 QLLLLNANKINCLRVDAFQ-DLHNLNLLSLYDNKLQTIAK-GTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCEE
T ss_pred CEEECCCCCCCEeCHHHcC-CCCCCCEEECCCCcCCEECH-HHHhCCCCCCEEEeCCCCcC
Confidence 99999877 4332122222 67889999998787765322 22456788999998887654
No 102
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.05 E-value=3.6e-07 Score=86.02 Aligned_cols=36 Identities=22% Similarity=0.159 Sum_probs=17.0
Q ss_pred cCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607 137 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 175 (250)
Q Consensus 137 ~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~ 175 (250)
.+++|+.|+|++|.++. +. -+.++++|+.|+++++.
T Consensus 484 ~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp GCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSC
T ss_pred cCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCCC
Confidence 44555555554454443 22 23344555555555543
No 103
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.05 E-value=1.3e-07 Score=85.99 Aligned_cols=132 Identities=20% Similarity=0.103 Sum_probs=69.1
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607 37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN 116 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~ 116 (250)
.+.++.|+++.+..++.-.. .....+++|+.|+|+++. ++.- ..+..+++|++|+|++|.++......+ ..+++
T Consensus 170 l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~-l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~ 243 (452)
T 3zyi_A 170 VPSLMRLDLGELKKLEYISE-GAFEGLFNLKYLNLGMCN-IKDM---PNLTPLVGLEELEMSGNHFPEIRPGSF-HGLSS 243 (452)
T ss_dssp CTTCCEEECCCCTTCCEECT-TTTTTCTTCCEEECTTSC-CSSC---CCCTTCTTCCEEECTTSCCSEECGGGG-TTCTT
T ss_pred CCcccEEeCCCCCCccccCh-hhccCCCCCCEEECCCCc-cccc---ccccccccccEEECcCCcCcccCcccc-cCccC
Confidence 45566666655333321100 011246677777777653 3221 124566777777777775543222222 34577
Q ss_pred CceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607 117 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL 176 (250)
Q Consensus 117 L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~ 176 (250)
|++|+++++ ++......+ ..+++|+.|+|++|.++.-. ......+++|+.|++++++-
T Consensus 244 L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 244 LKKLWVMNSQVSLIERNAF-DGLASLVELNLAHNNLSSLP-HDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCSCCC-TTSSTTCTTCCEEECCSSCE
T ss_pred CCEEEeCCCcCceECHHHh-cCCCCCCEEECCCCcCCccC-hHHhccccCCCEEEccCCCc
Confidence 777777666 332211122 25677777777666666321 12234567777777777653
No 104
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.03 E-value=6.7e-06 Score=75.99 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=26.7
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHH--HHhcCCCCCEEEecCCCCCHHHH-HHHHHhCCCCceeEecCC
Q 025607 62 RCPQLKRLVMPAWNRIKKTGICK--AIRMWRDLESLTMPSIANPPYLM-EEIAQNCRNFRELKIMGP 125 (250)
Q Consensus 62 ~c~~L~~L~L~~c~~itd~~l~~--~~~~c~~L~~L~Ls~c~~~d~~l-~~i~~~c~~L~~L~L~~~ 125 (250)
.+++|+.|+|+++ .+++..... .+..+++|+.|++++|.++.-.. ......+++|++|+++++
T Consensus 332 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N 397 (549)
T 2z81_A 332 HLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN 397 (549)
T ss_dssp HCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC
T ss_pred cCccccEEEccCC-ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC
Confidence 3455555555543 333322211 12344555555555554432211 122334455555555544
No 105
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.02 E-value=1.4e-06 Score=79.80 Aligned_cols=120 Identities=18% Similarity=0.094 Sum_probs=77.0
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607 37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN 116 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~ 116 (250)
.+.++.|+++++. +++- ..+ ..+++|++|+|+++ .++.- .+..+++|++|++++|.++.-. ...+++
T Consensus 41 l~~L~~L~Ls~n~-l~~~--~~l-~~l~~L~~L~Ls~n-~l~~~----~~~~l~~L~~L~Ls~N~l~~~~----~~~l~~ 107 (457)
T 3bz5_A 41 LATLTSLDCHNSS-ITDM--TGI-EKLTGLTKLICTSN-NITTL----DLSQNTNLTYLACDSNKLTNLD----VTPLTK 107 (457)
T ss_dssp HTTCCEEECCSSC-CCCC--TTG-GGCTTCSEEECCSS-CCSCC----CCTTCTTCSEEECCSSCCSCCC----CTTCTT
T ss_pred cCCCCEEEccCCC-cccC--hhh-cccCCCCEEEccCC-cCCeE----ccccCCCCCEEECcCCCCceee----cCCCCc
Confidence 3567788887653 3321 122 46788888888876 34432 1567788888888888665431 235788
Q ss_pred CceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607 117 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 177 (250)
Q Consensus 117 L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i 177 (250)
|++|+++++ ++.- .+ ..+++|++|+++.+.++.-. +.++++|++|++++|..+
T Consensus 108 L~~L~L~~N~l~~l---~~-~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~ 161 (457)
T 3bz5_A 108 LTYLNCDTNKLTKL---DV-SQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKI 161 (457)
T ss_dssp CCEEECCSSCCSCC---CC-TTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCC
T ss_pred CCEEECCCCcCCee---cC-CCCCcCCEEECCCCccceec----cccCCcCCEEECCCCCcc
Confidence 888888877 4431 12 36778888888777776521 345677777777777544
No 106
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.02 E-value=1.7e-06 Score=75.88 Aligned_cols=137 Identities=18% Similarity=0.166 Sum_probs=63.2
Q ss_pred CCCccEEEecCCCCCCHHHHHH--HHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHH--------
Q 025607 37 RGSIRTLIFHFNLYVSDDQLTY--TAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYL-------- 106 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d~~L~~--i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~-------- 106 (250)
.++++.|+++++.. +. +.. ....+++|++|+++++..++... ...+.++++|++|++++|.++...
T Consensus 123 l~~L~~L~L~~n~l-~~--l~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 198 (353)
T 2z80_A 123 LSSLTFLNLLGNPY-KT--LGETSLFSHLTKLQILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198 (353)
T ss_dssp CTTCSEEECTTCCC-SS--SCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred CccCCEEECCCCCC-cc--cCchhhhccCCCCcEEECCCCccccccC-HHHccCCCCCCEEECCCCCcCccCHHHHhccc
Confidence 46777777766532 21 111 12356777777777664333210 012334555555555555433221
Q ss_pred ---------------HHHHHHhCCCCceeEecCC-CCHHHHH--HHHhcCCCccEEEeecCCCCHHHHHHH---HhcCCC
Q 025607 107 ---------------MEEIAQNCRNFRELKIMGP-FDLLFAS--TLNMYLPKLKVLSLRCTTLNRDALILI---LDGLQN 165 (250)
Q Consensus 107 ---------------l~~i~~~c~~L~~L~L~~~-i~d~~~~--~i~~~~~~L~~L~L~~~~itd~~l~~i---~~~c~~ 165 (250)
...+...+++|++|+++++ +++.... ......+.++.+++..+.+++.++..+ +.++++
T Consensus 199 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~ 278 (353)
T 2z80_A 199 NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG 278 (353)
T ss_dssp EEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTT
T ss_pred cCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccC
Confidence 1122223445555555443 2211000 001123344444444444555544443 456778
Q ss_pred CcEEeeeCCCCc
Q 025607 166 LEVLNISHCLLI 177 (250)
Q Consensus 166 L~~Ldls~C~~i 177 (250)
|++|++++|..-
T Consensus 279 L~~L~Ls~N~l~ 290 (353)
T 2z80_A 279 LLELEFSRNQLK 290 (353)
T ss_dssp CCEEECCSSCCC
T ss_pred CCEEECCCCCCC
Confidence 888888877543
No 107
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.01 E-value=3.6e-07 Score=83.36 Aligned_cols=134 Identities=19% Similarity=0.104 Sum_probs=81.2
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607 37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN 116 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~ 116 (250)
.++|+.|+++.+. ++.-. ......+++|+.|+|+++. ++.. ....+.++++|++|++++|.++......+ ..+++
T Consensus 79 l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~ 153 (477)
T 2id5_A 79 LFNLRTLGLRSNR-LKLIP-LGVFTGLSNLTKLDISENK-IVIL-LDYMFQDLYNLKSLEVGDNDLVYISHRAF-SGLNS 153 (477)
T ss_dssp CTTCCEEECCSSC-CCSCC-TTSSTTCTTCCEEECTTSC-CCEE-CTTTTTTCTTCCEEEECCTTCCEECTTSS-TTCTT
T ss_pred CccCCEEECCCCc-CCccC-cccccCCCCCCEEECCCCc-cccC-ChhHccccccCCEEECCCCccceeChhhc-cCCCC
Confidence 4678888887653 22110 1112457899999998763 3321 11235678899999998886643322222 35788
Q ss_pred CceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607 117 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 177 (250)
Q Consensus 117 L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i 177 (250)
|++|+++++ ++.-....+. .+++|+.|++..+.++...- ..+..+++|++|++++|..+
T Consensus 154 L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~~~~~ 213 (477)
T 2id5_A 154 LEQLTLEKCNLTSIPTEALS-HLHGLIVLRLRHLNINAIRD-YSFKRLYRLKVLEISHWPYL 213 (477)
T ss_dssp CCEEEEESCCCSSCCHHHHT-TCTTCCEEEEESCCCCEECT-TCSCSCTTCCEEEEECCTTC
T ss_pred CCEEECCCCcCcccChhHhc-ccCCCcEEeCCCCcCcEeCh-hhcccCcccceeeCCCCccc
Confidence 999999887 4432222333 67888888887777654221 12345677777777776543
No 108
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.01 E-value=5.9e-07 Score=84.69 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=16.6
Q ss_pred cCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607 137 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 175 (250)
Q Consensus 137 ~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~ 175 (250)
.+++|+.|+|++|.++... ...+++|+.|+++++.
T Consensus 322 ~l~~L~~L~L~~N~l~~~~----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 322 QFDRLENLYLDHNSIVTLK----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp HHTTCSEEECCSSCCCCCC----CCTTCCCSEEECCSSC
T ss_pred cCCCCCEEECCCCCCCCcC----hhhcCCCCEEEeeCCC
Confidence 3455555555444444321 2334555555555543
No 109
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.00 E-value=2.4e-07 Score=85.44 Aligned_cols=61 Identities=10% Similarity=0.001 Sum_probs=27.2
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC
Q 025607 63 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP 125 (250)
Q Consensus 63 c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~ 125 (250)
+++|+.|+|+++ .++.. ....+.++++|+.|++++|.++......+...+++|+.|+++++
T Consensus 119 l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 119 GQGKKNIYLANN-KITML-RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp CSSCEEEECCSS-CCCSG-GGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred cCCCCEEECCCC-CCCCC-CchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 355555555544 22211 00112344555555555554444333333334455555555544
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.99 E-value=3.4e-07 Score=75.51 Aligned_cols=134 Identities=15% Similarity=0.085 Sum_probs=82.6
Q ss_pred CccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCc
Q 025607 39 SIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFR 118 (250)
Q Consensus 39 ~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~ 118 (250)
.++.|.++++. ++.-.-..+...+++|+.|+|+++ .++.-. ...+.++++|++|+|++|.++.-.... ...+++|+
T Consensus 33 ~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~ 108 (220)
T 2v70_A 33 YTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNN-KITDIE-EGAFEGASGVNEILLTSNRLENVQHKM-FKGLESLK 108 (220)
T ss_dssp TCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSSCCCCCCGGG-GTTCSSCC
T ss_pred CCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCC-cCCEEC-HHHhCCCCCCCEEECCCCccCccCHhH-hcCCcCCC
Confidence 45566666543 221100111246789999999876 344211 123567889999999998664322212 24578999
Q ss_pred eeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607 119 ELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 178 (250)
Q Consensus 119 ~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~ 178 (250)
+|+++++ ++.-....+. .+++|+.|+|+.|.++.-. ...+..+++|++|+++++.-.-
T Consensus 109 ~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 109 TLMLRSNRITCVGNDSFI-GLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp EEECTTSCCCCBCTTSST-TCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEEECCSCCEEC
T ss_pred EEECCCCcCCeECHhHcC-CCccCCEEECCCCcCCEEC-HHHhcCCCCCCEEEecCcCCcC
Confidence 9999887 4422112222 6789999999888877532 1234568899999999886543
No 111
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.99 E-value=1.4e-07 Score=85.52 Aligned_cols=107 Identities=15% Similarity=0.183 Sum_probs=46.5
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCC
Q 025607 62 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK 140 (250)
Q Consensus 62 ~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~ 140 (250)
.+++|+.|+|+++. ++. +. .+..+++|++|+|++|.++.-....+ ..+++|++|+++++ ++......+ ..+++
T Consensus 183 ~l~~L~~L~L~~n~-l~~--~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~ 256 (440)
T 3zyj_A 183 GLSNLRYLNLAMCN-LRE--IP-NLTPLIKLDELDLSGNHLSAIRPGSF-QGLMHLQKLWMIQSQIQVIERNAF-DNLQS 256 (440)
T ss_dssp TCSSCCEEECTTSC-CSS--CC-CCTTCSSCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTCCCCEECTTSS-TTCTT
T ss_pred cccccCeecCCCCc-Ccc--cc-ccCCCcccCEEECCCCccCccChhhh-ccCccCCEEECCCCceeEEChhhh-cCCCC
Confidence 34555555555542 221 10 13445555555555554432211111 23455555555554 322111111 14555
Q ss_pred ccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607 141 LKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 175 (250)
Q Consensus 141 L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~ 175 (250)
|+.|+|+.|.++.-. ..++..+++|+.|++++++
T Consensus 257 L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 257 LVEINLAHNNLTLLP-HDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCEEECTTSCCCCCC-TTTTSSCTTCCEEECCSSC
T ss_pred CCEEECCCCCCCccC-hhHhccccCCCEEEcCCCC
Confidence 555555555554221 1122345555555555544
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.98 E-value=1.1e-07 Score=84.13 Aligned_cols=111 Identities=17% Similarity=0.150 Sum_probs=60.4
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCC
Q 025607 62 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPK 140 (250)
Q Consensus 62 ~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~ 140 (250)
.+++|+.|+|+++ .++.-. ...+.++++|++|+|++|.++.-.. .....+++|+.|+|+++ ++.-....+ ..+++
T Consensus 62 ~l~~L~~L~L~~N-~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~~-~~l~~ 137 (361)
T 2xot_A 62 RLTNLHSLLLSHN-HLNFIS-SEAFVPVPNLRYLDLSSNHLHTLDE-FLFSDLQALEVLLLYNNHIVVVDRNAF-EDMAQ 137 (361)
T ss_dssp CCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTTTT-TTCTT
T ss_pred cccccCEEECCCC-cCCccC-hhhccCCCCCCEEECCCCcCCcCCH-HHhCCCcCCCEEECCCCcccEECHHHh-CCccc
Confidence 5677777777765 333211 0124567777777777775542111 11234677777777766 432111122 25677
Q ss_pred ccEEEeecCCCCHHHHHHH--HhcCCCCcEEeeeCCCC
Q 025607 141 LKVLSLRCTTLNRDALILI--LDGLQNLEVLNISHCLL 176 (250)
Q Consensus 141 L~~L~L~~~~itd~~l~~i--~~~c~~L~~Ldls~C~~ 176 (250)
|++|+|+.|.++.-....+ ...+++|+.||++++..
T Consensus 138 L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 138 LQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 7777777676664221111 13467777777777643
No 113
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.96 E-value=9.8e-07 Score=78.40 Aligned_cols=82 Identities=17% Similarity=0.139 Sum_probs=46.2
Q ss_pred CCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCc
Q 025607 89 WRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLE 167 (250)
Q Consensus 89 c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~ 167 (250)
.++|+.|++++|.+++. .....+++|++|+++++ +++.....+. .+++|++|+++++.++.- ......+|+|+
T Consensus 225 ~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~ 298 (390)
T 3o6n_A 225 NVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISNNRLVAL--NLYGQPIPTLK 298 (390)
T ss_dssp CSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGGT-TCSSCCEEECCSSCCCEE--ECSSSCCTTCC
T ss_pred cccccEEECCCCCCccc---HHHcCCCCccEEECCCCcCCCcChhHcc-ccccCCEEECCCCcCccc--CcccCCCCCCC
Confidence 35677777777755543 12345677777777666 4332122222 566777777766666542 11223467777
Q ss_pred EEeeeCCCC
Q 025607 168 VLNISHCLL 176 (250)
Q Consensus 168 ~Ldls~C~~ 176 (250)
+|++++|..
T Consensus 299 ~L~L~~n~l 307 (390)
T 3o6n_A 299 VLDLSHNHL 307 (390)
T ss_dssp EEECCSSCC
T ss_pred EEECCCCcc
Confidence 777777743
No 114
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.95 E-value=1.8e-06 Score=79.02 Aligned_cols=98 Identities=17% Similarity=0.110 Sum_probs=53.3
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCc
Q 025607 63 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL 141 (250)
Q Consensus 63 c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L 141 (250)
+++|+.|+++++..++.. .+..+++|+.|++++|.++.- . ...+++|++|+++++ ++.- .+ ..+++|
T Consensus 147 l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~l~~l--~--l~~l~~L~~L~l~~N~l~~~---~l-~~l~~L 214 (457)
T 3bz5_A 147 NTQLTELDCHLNKKITKL----DVTPQTQLTTLDCSFNKITEL--D--VSQNKLLNRLNCDTNNITKL---DL-NQNIQL 214 (457)
T ss_dssp CTTCCEEECTTCSCCCCC----CCTTCTTCCEEECCSSCCCCC--C--CTTCTTCCEEECCSSCCSCC---CC-TTCTTC
T ss_pred CCcCCEEECCCCCccccc----ccccCCcCCEEECCCCcccee--c--cccCCCCCEEECcCCcCCee---cc-ccCCCC
Confidence 444444544444333221 134456666666666654431 1 234566777777665 3322 12 256777
Q ss_pred cEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607 142 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL 176 (250)
Q Consensus 142 ~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~ 176 (250)
+.|+++.+.++. +. +..+++|++|+++++..
T Consensus 215 ~~L~Ls~N~l~~--ip--~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 215 TFLDCSSNKLTE--ID--VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp SEEECCSSCCSC--CC--CTTCTTCSEEECCSSCC
T ss_pred CEEECcCCcccc--cC--ccccCCCCEEEeeCCcC
Confidence 777776666665 22 45677777777777653
No 115
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.92 E-value=3.1e-06 Score=80.48 Aligned_cols=113 Identities=12% Similarity=0.119 Sum_probs=84.3
Q ss_pred hhCCCCcEEEcCCCCCCCHH----------------HHHHHHh--cCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEe
Q 025607 61 ERCPQLKRLVMPAWNRIKKT----------------GICKAIR--MWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKI 122 (250)
Q Consensus 61 ~~c~~L~~L~L~~c~~itd~----------------~l~~~~~--~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L 122 (250)
..+++|++|+|+++. ++.. .+...+. ++++|++|++++|.++......++ .+++|++|++
T Consensus 203 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L 280 (636)
T 4eco_A 203 MRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINV 280 (636)
T ss_dssp GGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT-TCSSCCEEEC
T ss_pred hcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh-cCCCCCEEEC
Confidence 468999999999874 6541 1333345 899999999999976544333333 5799999999
Q ss_pred cCC--CCH-HHHHHHHh-----cCCCccEEEeecCCCCHHHHHH--HHhcCCCCcEEeeeCCCCc
Q 025607 123 MGP--FDL-LFASTLNM-----YLPKLKVLSLRCTTLNRDALIL--ILDGLQNLEVLNISHCLLI 177 (250)
Q Consensus 123 ~~~--i~d-~~~~~i~~-----~~~~L~~L~L~~~~itd~~l~~--i~~~c~~L~~Ldls~C~~i 177 (250)
+++ ++. .....+.. .+++|++|+++.+.++ .+.. .+.++++|++|++++|..-
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQLE 343 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcCc
Confidence 988 776 44444442 3599999999989988 4554 6778999999999998754
No 116
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.91 E-value=4.1e-07 Score=78.22 Aligned_cols=133 Identities=17% Similarity=0.105 Sum_probs=87.5
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCC
Q 025607 36 SRGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCR 115 (250)
Q Consensus 36 ~~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~ 115 (250)
..++++.|+++.+. ++ .+.......++|+.|+|+++ .++.-. ...+.++++|++|++++|.++.-. ..+...++
T Consensus 75 ~l~~L~~L~Ls~N~-l~--~l~~~~~~l~~L~~L~l~~N-~l~~l~-~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~ 148 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQ-LQ--SLPLLGQTLPALTVLDVSFN-RLTSLP-LGALRGLGELQELYLKGNELKTLP-PGLLTPTP 148 (290)
T ss_dssp CCTTCCEEECCSSC-CS--SCCCCTTTCTTCCEEECCSS-CCCCCC-SSTTTTCTTCCEEECTTSCCCCCC-TTTTTTCT
T ss_pred CCCcCCEEECCCCc-CC--cCchhhccCCCCCEEECCCC-cCcccC-HHHHcCCCCCCEEECCCCCCCccC-hhhccccc
Confidence 34567777776653 22 11122346789999999976 444210 123567899999999999765321 12224579
Q ss_pred CCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607 116 NFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 177 (250)
Q Consensus 116 ~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i 177 (250)
+|+.|+++++ ++.-. ..+...+++|+.|+|+.|.++. +..-+...+.|+.|++++.+-.
T Consensus 149 ~L~~L~L~~N~l~~l~-~~~~~~l~~L~~L~L~~N~l~~--ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 149 KLEKLSLANNNLTELP-AGLLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TCCEEECTTSCCSCCC-TTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCCCSEEECCSCCBC
T ss_pred CCCEEECCCCcCCccC-HHHhcCcCCCCEEECCCCcCCc--cChhhcccccCCeEEeCCCCcc
Confidence 9999999988 44211 1122468999999999898882 3333445688999999987654
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.91 E-value=1.9e-07 Score=75.38 Aligned_cols=110 Identities=13% Similarity=0.087 Sum_probs=76.0
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCcc
Q 025607 64 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK 142 (250)
Q Consensus 64 ~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~ 142 (250)
++|+.|+|++. .++...-...+.++++|++|+|++|.++.-....+ ..+++|++|+++++ ++.-....+ ..+++|+
T Consensus 29 ~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~ 105 (192)
T 1w8a_A 29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF-EGASHIQELQLGENKIKEISNKMF-LGLHQLK 105 (192)
T ss_dssp TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSCCCCEECSSSS-TTCTTCC
T ss_pred CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHc-CCcccCCEEECCCCcCCccCHHHh-cCCCCCC
Confidence 48999999976 44432111236788999999999997764322223 35799999999987 443221122 2689999
Q ss_pred EEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607 143 VLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 177 (250)
Q Consensus 143 ~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i 177 (250)
+|+|++|.++... ...+..+++|++|+++++.-.
T Consensus 106 ~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 106 TLNLYDNQISCVM-PGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp EEECCSSCCCEEC-TTSSTTCTTCCEEECTTCCBC
T ss_pred EEECCCCcCCeeC-HHHhhcCCCCCEEEeCCCCcc
Confidence 9999989888532 122456899999999998754
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.87 E-value=3.1e-07 Score=75.70 Aligned_cols=112 Identities=11% Similarity=0.078 Sum_probs=77.4
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCc
Q 025607 63 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL 141 (250)
Q Consensus 63 c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L 141 (250)
.+.++.|+|++. .++...-..++.++++|++|++++|.++.-....+ ..+++|++|+++++ ++.-....+ ..+++|
T Consensus 31 ~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L 107 (220)
T 2v70_A 31 PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF-EGASGVNEILLTSNRLENVQHKMF-KGLESL 107 (220)
T ss_dssp CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCCCCGGGG-TTCSSC
T ss_pred CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHh-CCCCCCCEEECCCCccCccCHhHh-cCCcCC
Confidence 356899999976 45432111236789999999999997754222122 45799999999988 443222222 378999
Q ss_pred cEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607 142 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 178 (250)
Q Consensus 142 ~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~ 178 (250)
++|+|+.|.++...- ..+.++++|++|+++++..-+
T Consensus 108 ~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~ 143 (220)
T 2v70_A 108 KTLMLRSNRITCVGN-DSFIGLSSVRLLSLYDNQITT 143 (220)
T ss_dssp CEEECTTSCCCCBCT-TSSTTCTTCSEEECTTSCCCC
T ss_pred CEEECCCCcCCeECH-hHcCCCccCCEEECCCCcCCE
Confidence 999998888875321 223578999999999986544
No 119
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.86 E-value=2e-06 Score=80.97 Aligned_cols=107 Identities=16% Similarity=0.164 Sum_probs=73.1
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCcc
Q 025607 64 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK 142 (250)
Q Consensus 64 ~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~ 142 (250)
++|+.|+|+++ .+++. ..+..+++|+.|+|++|.++......+ ..+++|+.|+++++ ++. +......+|+|+
T Consensus 232 ~~L~~L~L~~n-~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~ 304 (597)
T 3oja_B 232 VELTILKLQHN-NLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPF-VKMQRLERLYISNNRLVA--LNLYGQPIPTLK 304 (597)
T ss_dssp SCCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSSCCCEEESGGG-TTCSSCCEEECTTSCCCE--EECSSSCCTTCC
T ss_pred CCCCEEECCCC-CCCCC---hhhccCCCCCEEECCCCccCCCCHHHh-cCccCCCEEECCCCCCCC--CCcccccCCCCc
Confidence 45666666655 34332 346788999999999987765433333 35789999999887 443 111123589999
Q ss_pred EEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCC
Q 025607 143 VLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV 179 (250)
Q Consensus 143 ~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~ 179 (250)
.|+|++|.++. +..-+..+++|++|++++|...+.
T Consensus 305 ~L~Ls~N~l~~--i~~~~~~l~~L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 305 VLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVTL 339 (597)
T ss_dssp EEECCSSCCCC--CGGGHHHHTTCSEEECCSSCCCCC
T ss_pred EEECCCCCCCc--cCcccccCCCCCEEECCCCCCCCc
Confidence 99998888873 333346689999999999976543
No 120
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.85 E-value=6e-07 Score=85.39 Aligned_cols=87 Identities=18% Similarity=0.188 Sum_probs=41.8
Q ss_pred hcCCCCCEEEecCCCCCHHHHH-------HHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHH
Q 025607 87 RMWRDLESLTMPSIANPPYLME-------EIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALIL 158 (250)
Q Consensus 87 ~~c~~L~~L~Ls~c~~~d~~l~-------~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~ 158 (250)
.++++|++|++++|.++.-.-. .....+++|++|+++++ ++.-.. .....+++|+.|+++++.++.-. ..
T Consensus 501 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~l~-~~ 578 (680)
T 1ziw_A 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV-EVFKDLFELKIIDLGLNNLNTLP-AS 578 (680)
T ss_dssp TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCC-TT
T ss_pred ccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH-HHcccccCcceeECCCCCCCcCC-Hh
Confidence 4455555566555544321000 01234566666666655 331000 01125666677777666665211 11
Q ss_pred HHhcCCCCcEEeeeCCC
Q 025607 159 ILDGLQNLEVLNISHCL 175 (250)
Q Consensus 159 i~~~c~~L~~Ldls~C~ 175 (250)
...++++|+.|+++++.
T Consensus 579 ~~~~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 579 VFNNQVSLKSLNLQKNL 595 (680)
T ss_dssp TTTTCTTCCEEECTTSC
T ss_pred HhCCCCCCCEEECCCCc
Confidence 23456777777777763
No 121
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.84 E-value=6.2e-07 Score=87.96 Aligned_cols=132 Identities=12% Similarity=0.077 Sum_probs=80.1
Q ss_pred cCCCccEEEecCCCCCC---HHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHH-HH
Q 025607 36 SRGSIRTLIFHFNLYVS---DDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEE-IA 111 (250)
Q Consensus 36 ~~~~l~~L~l~~~~~i~---d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~-i~ 111 (250)
...+|+.|+++++..+. ++.+ ..+++|+.|+|+++. ++.. ....+.++++|++|+|++|.+++..+.. ..
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f----~~L~~L~~L~Ls~N~-l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 119 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAF----RNLPNLRILDLGSSK-IYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTT----SSCTTCCEEECTTCC-CCEE-CTTSSCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred ccccCeEEeCCCCCCccccCHHHh----cCCCCCCEEECCCCc-Cccc-CHhHccCCcccCEeeCcCCCCCcccccCccc
Confidence 35678888887764322 2222 467889999998763 3321 1223567889999999988766533222 12
Q ss_pred HhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCH---HHHHHHHhcCCCCcEEeeeCCC
Q 025607 112 QNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNR---DALILILDGLQNLEVLNISHCL 175 (250)
Q Consensus 112 ~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd---~~l~~i~~~c~~L~~Ldls~C~ 175 (250)
..+++|++|+++++ ++..........+++|++|+++++.++. ..+..+.. ++|+.|+++++.
T Consensus 120 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~--~~L~~L~L~~n~ 185 (844)
T 3j0a_A 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG--KTLSFFSLAANS 185 (844)
T ss_dssp SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH--CSSCCCEECCSB
T ss_pred cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC--CccceEECCCCc
Confidence 45788999999887 4432221122378899999997777654 33333321 455555555543
No 122
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.82 E-value=1.1e-06 Score=83.60 Aligned_cols=136 Identities=13% Similarity=0.048 Sum_probs=86.7
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHH---H----HHHHhcCCCCCEEEecCCCCCHHHHHH
Q 025607 37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTG---I----CKAIRMWRDLESLTMPSIANPPYLMEE 109 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~---l----~~~~~~c~~L~~L~Ls~c~~~d~~l~~ 109 (250)
.+.++.|+++.+. ++. ........+++|+.|+|+++ .++.-. + ...+.++++|+.|++++|.++. ....
T Consensus 479 l~~L~~L~Ls~N~-l~~-i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-i~~~ 554 (680)
T 1ziw_A 479 LRNLTILDLSNNN-IAN-INDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE-IPVE 554 (680)
T ss_dssp CTTCCEEECCSSC-CCC-CCTTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCC-CCTT
T ss_pred CCCCCEEECCCCC-CCc-CChhhhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCCCCCC-CCHH
Confidence 4567777776643 221 00111245788999999876 333210 0 0125788999999999997652 1111
Q ss_pred HHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCc
Q 025607 110 IAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLI 177 (250)
Q Consensus 110 i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i 177 (250)
....+++|++|+++++ ++.-.. .+...+++|+.|+++.|.++.-....+...+++|+.|++++++-.
T Consensus 555 ~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 555 VFKDLFELKIIDLGLNNLNTLPA-SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred HcccccCcceeECCCCCCCcCCH-hHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcc
Confidence 2356899999999987 542111 122378999999998888875443333336799999999987654
No 123
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.82 E-value=2.8e-06 Score=71.80 Aligned_cols=111 Identities=12% Similarity=0.062 Sum_probs=44.5
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCC
Q 025607 37 RGSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRN 116 (250)
Q Consensus 37 ~~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~ 116 (250)
.++++.|+++++. ++.-.- .....+++|++|+|+++. ++... ...+.++++|++|++++|.++.-.... ...+++
T Consensus 51 l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~ 125 (276)
T 2z62_A 51 FPELQVLDLSRCE-IQTIED-GAYQSLSHLSTLILTGNP-IQSLA-LGAFSGLSSLQKLVAVETNLASLENFP-IGHLKT 125 (276)
T ss_dssp CTTCSEEECTTCC-CCEECT-TTTTTCTTCCEEECTTCC-CCEEC-TTTTTTCTTCCEEECTTSCCCCSTTCC-CTTCTT
T ss_pred ccCCcEEECCCCc-CCccCH-HHccCCcCCCEEECCCCc-cCccC-hhhhcCCccccEEECCCCCccccCchh-cccCCC
Confidence 3456666665542 221000 011245666666666542 22110 012344555555555555332211000 123455
Q ss_pred CceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCC
Q 025607 117 FRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLN 152 (250)
Q Consensus 117 L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~it 152 (250)
|++|+++++ ++...+......+++|++|+++++.++
T Consensus 126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 555555544 322111111124455555555444443
No 124
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.81 E-value=3.3e-07 Score=79.80 Aligned_cols=37 Identities=30% Similarity=0.397 Sum_probs=16.3
Q ss_pred cCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607 137 YLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCL 175 (250)
Q Consensus 137 ~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~ 175 (250)
.+++|++|+++++.++. +..-+..+++|++|+++++.
T Consensus 239 ~l~~L~~L~L~~N~l~~--lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLSR--VPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp GCTTCCEEECCSSCCCB--CCTTGGGCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCcCee--cChhhhcCccCCEEECCCCC
Confidence 34455555554444441 21113344555555555543
No 125
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.81 E-value=1.9e-05 Score=67.32 Aligned_cols=84 Identities=21% Similarity=0.137 Sum_probs=58.0
Q ss_pred HhcCCCCCEEEecCCCCCH-HHHHHHHHhCCCCceeEecCC-CCHH-HHHHHHhcCCCccEEEeecCCCCH------HHH
Q 025607 86 IRMWRDLESLTMPSIANPP-YLMEEIAQNCRNFRELKIMGP-FDLL-FASTLNMYLPKLKVLSLRCTTLNR------DAL 156 (250)
Q Consensus 86 ~~~c~~L~~L~Ls~c~~~d-~~l~~i~~~c~~L~~L~L~~~-i~d~-~~~~i~~~~~~L~~L~L~~~~itd------~~l 156 (250)
..++|+|+.|+|++|.++. ..+..+...+|+|+.|+|+++ +++- .+..+. .+ +|++|+|.+|.++. .-.
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~-~l-~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK-GL-KLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGT-TS-CCSEEECTTSTTGGGCSSHHHHH
T ss_pred HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcc-cC-CcceEEccCCcCccccCcchhHH
Confidence 3678999999999987654 223344457899999999887 5542 232222 23 89999998888874 234
Q ss_pred HHHHhcCCCCcEEee
Q 025607 157 ILILDGLQNLEVLNI 171 (250)
Q Consensus 157 ~~i~~~c~~L~~Ldl 171 (250)
..+...+|+|+.||=
T Consensus 244 ~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 244 SAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHCTTCCEESS
T ss_pred HHHHHHCcccCeECC
Confidence 466778899998863
No 126
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.77 E-value=2.3e-07 Score=77.02 Aligned_cols=13 Identities=0% Similarity=0.061 Sum_probs=6.6
Q ss_pred hcCCCCCEEEecC
Q 025607 87 RMWRDLESLTMPS 99 (250)
Q Consensus 87 ~~c~~L~~L~Ls~ 99 (250)
.++++|++|++++
T Consensus 77 ~~l~~L~~L~l~~ 89 (239)
T 2xwt_C 77 YNLSKVTHIEIRN 89 (239)
T ss_dssp ESCTTCCEEEEEE
T ss_pred CCCcCCcEEECCC
Confidence 3445555555554
No 127
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.77 E-value=2.2e-05 Score=66.96 Aligned_cols=89 Identities=19% Similarity=0.238 Sum_probs=63.8
Q ss_pred HHHHHHhhCCCCcEEEcCCCCCCCH-HHHHHHHhcCCCCCEEEecCCCCCHH-HHHHHHHhCCCCceeEecCC-CCH---
Q 025607 55 QLTYTAERCPQLKRLVMPAWNRIKK-TGICKAIRMWRDLESLTMPSIANPPY-LMEEIAQNCRNFRELKIMGP-FDL--- 128 (250)
Q Consensus 55 ~L~~i~~~c~~L~~L~L~~c~~itd-~~l~~~~~~c~~L~~L~Ls~c~~~d~-~l~~i~~~c~~L~~L~L~~~-i~d--- 128 (250)
.+..+.+.+|+|++|+|++. .++. .++...+..+++|+.|+|++|.+++- .+..+. .. +|++|+|+++ ++.
T Consensus 161 ~l~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~-~l-~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 161 TLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK-GL-KLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHHHHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGT-TS-CCSEEECTTSTTGGGCS
T ss_pred HHHHHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcc-cC-CcceEEccCCcCccccC
Confidence 44455578999999999975 4543 34555678999999999999987654 333332 22 8999999987 542
Q ss_pred ---HHHHHHHhcCCCccEEEe
Q 025607 129 ---LFASTLNMYLPKLKVLSL 146 (250)
Q Consensus 129 ---~~~~~i~~~~~~L~~L~L 146 (250)
.-...+...+|+|+.||=
T Consensus 238 ~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 238 DQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp SHHHHHHHHHHHCTTCCEESS
T ss_pred cchhHHHHHHHHCcccCeECC
Confidence 334456668999999873
No 128
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.75 E-value=1e-06 Score=72.55 Aligned_cols=111 Identities=18% Similarity=0.204 Sum_probs=77.3
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCcc
Q 025607 64 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK 142 (250)
Q Consensus 64 ~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~ 142 (250)
++|+.|+|++. .++.-. ...+.++++|+.|+|++|.++.-....+ ..+++|++|+++++ ++.-. ..+...+++|+
T Consensus 32 ~~l~~L~l~~n-~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~ 107 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDAF-QGLRSLNSLVLYGNKITELP-KSLFEGLFSLQ 107 (220)
T ss_dssp TTCCEEECCSS-CCCEEC-TTSSTTCTTCCEEECCSSCCCEECTTTT-TTCSSCCEEECCSSCCCCCC-TTTTTTCTTCC
T ss_pred cCCCEEECCCC-cCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHHHh-hCCcCCCEEECCCCcCCccC-HhHccCCCCCC
Confidence 68999999976 444211 1135678999999999997764322222 35799999999988 54211 11224789999
Q ss_pred EEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcCC
Q 025607 143 VLSLRCTTLNRDALILILDGLQNLEVLNISHCLLIDV 179 (250)
Q Consensus 143 ~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~~ 179 (250)
.|+|+.|.++.... ..+.++++|++|+++++..-+.
T Consensus 108 ~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~ 143 (220)
T 2v9t_B 108 LLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTI 143 (220)
T ss_dssp EEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCC
T ss_pred EEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEE
Confidence 99998888875322 2345789999999999975443
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.74 E-value=1.5e-06 Score=84.07 Aligned_cols=107 Identities=21% Similarity=0.142 Sum_probs=59.7
Q ss_pred hhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCC
Q 025607 61 ERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLP 139 (250)
Q Consensus 61 ~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~ 139 (250)
...++|+.|+|+++. ++ .+..-+.++++|++|+|++|.++ .....+ ..+++|+.|+|+++ ++ ..-..+ ..++
T Consensus 221 ~~l~~L~~L~Ls~n~-l~--~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~ 293 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQ-IF--NISANIFKYDFLTRLYLNGNSLT-ELPAEI-KNLSNLRVLDLSHNRLT-SLPAEL-GSCF 293 (727)
T ss_dssp -CCCCCCEEECTTSC-CS--CCCGGGGGCCSCSCCBCTTSCCS-CCCGGG-GGGTTCCEEECTTSCCS-SCCSSG-GGGT
T ss_pred ccCCCCcEEECCCCC-CC--CCChhhcCCCCCCEEEeeCCcCc-ccChhh-hCCCCCCEEeCcCCcCC-ccChhh-cCCC
Confidence 345667777777653 22 12122336677777777777554 111222 34677777777766 44 111112 2567
Q ss_pred CccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCC
Q 025607 140 KLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLL 176 (250)
Q Consensus 140 ~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~ 176 (250)
+|++|+|+.|.++ .+..-+.++++|+.|+|+++..
T Consensus 294 ~L~~L~L~~N~l~--~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 294 QLKYFYFFDNMVT--TLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp TCSEEECCSSCCC--CCCSSTTSCTTCCCEECTTSCC
T ss_pred CCCEEECCCCCCC--ccChhhhcCCCccEEeCCCCcc
Confidence 7777777666665 2222245567777777777754
No 130
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.71 E-value=1.8e-05 Score=75.30 Aligned_cols=76 Identities=21% Similarity=0.148 Sum_probs=51.2
Q ss_pred CCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCc
Q 025607 89 WRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLE 167 (250)
Q Consensus 89 c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~ 167 (250)
.++|+.|++++|.++. +...+++|+.|+++++ ++. +...+++|+.|+|++|.++ .+...+.++++|+
T Consensus 220 ~~~L~~L~Ls~N~L~~-----lp~~l~~L~~L~Ls~N~L~~-----lp~~~~~L~~L~Ls~N~L~--~lp~~l~~l~~L~ 287 (622)
T 3g06_A 220 PSGLKELIVSGNRLTS-----LPVLPSELKELMVSGNRLTS-----LPMLPSGLLSLSVYRNQLT--RLPESLIHLSSET 287 (622)
T ss_dssp CTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCC--SCCGGGGGSCTTC
T ss_pred CCCCCEEEccCCccCc-----CCCCCCcCcEEECCCCCCCc-----CCcccccCcEEeCCCCCCC--cCCHHHhhccccC
Confidence 3677777777775553 2245678888888776 431 1225678888888777777 3344456788888
Q ss_pred EEeeeCCCC
Q 025607 168 VLNISHCLL 176 (250)
Q Consensus 168 ~Ldls~C~~ 176 (250)
.|+++++..
T Consensus 288 ~L~L~~N~l 296 (622)
T 3g06_A 288 TVNLEGNPL 296 (622)
T ss_dssp EEECCSCCC
T ss_pred EEEecCCCC
Confidence 888888763
No 131
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.65 E-value=7.3e-07 Score=77.28 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=17.4
Q ss_pred HhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC
Q 025607 86 IRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP 125 (250)
Q Consensus 86 ~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~ 125 (250)
+.++++|++|++++|.++......+....++|++|+++++
T Consensus 145 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC
Confidence 3445555555555554432222222222125555555443
No 132
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.62 E-value=8.6e-07 Score=82.82 Aligned_cols=109 Identities=16% Similarity=0.099 Sum_probs=48.7
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCc
Q 025607 63 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL 141 (250)
Q Consensus 63 c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L 141 (250)
.++|+.|+|+++...+ ......+..+++|+.|+|++|.++.-....+ ..+++|++|+|+++ ++.-....+ ..+++|
T Consensus 468 ~~~L~~L~Ls~N~~~~-~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f-~~l~~L~~L~Ls~N~l~~l~~~~~-~~l~~L 544 (635)
T 4g8a_A 468 LSSLEVLKMAGNSFQE-NFLPDIFTELRNLTFLDLSQCQLEQLSPTAF-NSLSSLQVLNMSHNNFFSLDTFPY-KCLNSL 544 (635)
T ss_dssp CTTCCEEECTTCEEGG-GEECSCCTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTSCCCBCCCGGG-TTCTTC
T ss_pred chhhhhhhhhhccccc-ccCchhhhhccccCEEECCCCccCCcChHHH-cCCCCCCEEECCCCcCCCCChhHH-hCCCCC
Confidence 4455555555442111 0011123455666666666664432211111 24566666666655 321111111 245666
Q ss_pred cEEEeecCCCCHHHHHHHHhcC-CCCcEEeeeCCC
Q 025607 142 KVLSLRCTTLNRDALILILDGL-QNLEVLNISHCL 175 (250)
Q Consensus 142 ~~L~L~~~~itd~~l~~i~~~c-~~L~~Ldls~C~ 175 (250)
+.|+|+.|.++...-.. +.+. ++|++|++++++
T Consensus 545 ~~L~Ls~N~l~~~~~~~-l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 545 QVLDYSLNHIMTSKKQE-LQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CEEECTTSCCCBCCSSC-TTCCCTTCCEEECTTCC
T ss_pred CEEECCCCcCCCCCHHH-HHhhhCcCCEEEeeCCC
Confidence 66666555555322111 1233 456666666543
No 133
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.59 E-value=1.7e-06 Score=76.37 Aligned_cols=110 Identities=15% Similarity=0.066 Sum_probs=75.9
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHh-cCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCc
Q 025607 64 PQLKRLVMPAWNRIKKTGICKAIR-MWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL 141 (250)
Q Consensus 64 ~~L~~L~L~~c~~itd~~l~~~~~-~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L 141 (250)
++++.|+|++. .++.-.- ..+. ++++|+.|+|++|.++.-....+ ..+++|++|+|+++ ++.-....+ ..+++|
T Consensus 39 ~~l~~L~Ls~N-~l~~l~~-~~~~~~l~~L~~L~L~~N~i~~i~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L 114 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLRA-EWTPTRLTNLHSLLLSHNHLNFISSEAF-VPVPNLRYLDLSSNHLHTLDEFLF-SDLQAL 114 (361)
T ss_dssp TTCSEEECCSS-CCCEECT-TSSSSCCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECTTTT-TTCTTC
T ss_pred CCCCEEECCCC-CCCccCh-hhhhhcccccCEEECCCCcCCccChhhc-cCCCCCCEEECCCCcCCcCCHHHh-CCCcCC
Confidence 46999999976 4543211 1233 78999999999997754222222 35799999999988 442111112 378999
Q ss_pred cEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607 142 KVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 178 (250)
Q Consensus 142 ~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~ 178 (250)
+.|+|+.|.++.-.- ..+.++++|++|+++++..-+
T Consensus 115 ~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 115 EVLLLYNNHIVVVDR-NAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp CEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCS
T ss_pred CEEECCCCcccEECH-HHhCCcccCCEEECCCCcCCe
Confidence 999999898875321 224678999999999986544
No 134
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.46 E-value=1.6e-05 Score=74.93 Aligned_cols=9 Identities=11% Similarity=0.113 Sum_probs=4.4
Q ss_pred CccEEEecC
Q 025607 39 SIRTLIFHF 47 (250)
Q Consensus 39 ~l~~L~l~~ 47 (250)
+++.|++++
T Consensus 60 ~L~~L~Ls~ 68 (571)
T 3cvr_A 60 QFSELQLNR 68 (571)
T ss_dssp TCSEEECCS
T ss_pred CccEEEeCC
Confidence 455555544
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.45 E-value=6.6e-06 Score=64.93 Aligned_cols=109 Identities=13% Similarity=0.070 Sum_probs=71.5
Q ss_pred CCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCC
Q 025607 38 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNF 117 (250)
Q Consensus 38 ~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L 117 (250)
+.++.|.++++. ++. ........+++|++|+|+++ .++.- ....+..+++|+.|++++|.++.-.. .....+++|
T Consensus 28 ~~l~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L 102 (177)
T 2o6r_A 28 SSATRLELESNK-LQS-LPHGVFDKLTQLTKLSLSQN-QIQSL-PDGVFDKLTKLTILYLHENKLQSLPN-GVFDKLTQL 102 (177)
T ss_dssp TTCSEEECCSSC-CCC-CCTTTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred CCCcEEEeCCCc-ccE-eCHHHhcCcccccEEECCCC-cceEe-ChhHccCCCccCEEECCCCCccccCH-HHhhCCccc
Confidence 578888887754 321 11112246789999999976 44421 11234688999999999997653211 122457999
Q ss_pred ceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCC
Q 025607 118 RELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLN 152 (250)
Q Consensus 118 ~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~it 152 (250)
++|+++++ ++.-. ..+...+++|++|++.+|.++
T Consensus 103 ~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 103 KELALDTNQLKSVP-DGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBC
T ss_pred CEEECcCCcceEeC-HHHhcCCcccCEEEecCCCee
Confidence 99999987 44211 122246899999999888766
No 136
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.34 E-value=9.7e-05 Score=70.21 Aligned_cols=14 Identities=29% Similarity=0.280 Sum_probs=7.5
Q ss_pred CCccEEEeecCCCC
Q 025607 139 PKLKVLSLRCTTLN 152 (250)
Q Consensus 139 ~~L~~L~L~~~~it 152 (250)
++|+.|++++|.++
T Consensus 181 ~~L~~L~Ls~N~l~ 194 (622)
T 3g06_A 181 SGLQELSVSDNQLA 194 (622)
T ss_dssp TTCCEEECCSSCCS
T ss_pred CCCcEEECCCCCCC
Confidence 55555555545444
No 137
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.31 E-value=4.9e-05 Score=69.37 Aligned_cols=16 Identities=6% Similarity=0.011 Sum_probs=7.8
Q ss_pred HhcCCCCCEEEecCCC
Q 025607 86 IRMWRDLESLTMPSIA 101 (250)
Q Consensus 86 ~~~c~~L~~L~Ls~c~ 101 (250)
+.++++|++|++++|.
T Consensus 149 ~~~l~~L~~L~l~~N~ 164 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNS 164 (454)
T ss_dssp CTTCTTCCEEECCSSC
T ss_pred cCCCCCCCEEECCCCc
Confidence 3444555555555543
No 138
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.31 E-value=4.3e-05 Score=71.96 Aligned_cols=81 Identities=11% Similarity=0.052 Sum_probs=36.4
Q ss_pred CCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHH--HHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCC
Q 025607 89 WRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLL--FASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQN 165 (250)
Q Consensus 89 c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~--~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~ 165 (250)
+++|+.|++++|.++. +..+. ++|+.|+++++ ++.- ....+....+.|+.|+|++|.++. +..-+..+++
T Consensus 159 l~~L~~L~Ls~N~L~~--lp~l~---~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~--lp~~l~~l~~ 231 (571)
T 3cvr_A 159 PTSLEVLSVRNNQLTF--LPELP---ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITH--IPENILSLDP 231 (571)
T ss_dssp CTTCCEEECCSSCCSC--CCCCC---TTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCCCC--CCGGGGGSCT
T ss_pred CCCcCEEECCCCCCCC--cchhh---CCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCccee--cCHHHhcCCC
Confidence 4555555555554332 11111 56666666555 3210 000111112223666666666662 2222334677
Q ss_pred CcEEeeeCCCC
Q 025607 166 LEVLNISHCLL 176 (250)
Q Consensus 166 L~~Ldls~C~~ 176 (250)
|+.|+++++..
T Consensus 232 L~~L~L~~N~l 242 (571)
T 3cvr_A 232 TCTIILEDNPL 242 (571)
T ss_dssp TEEEECCSSSC
T ss_pred CCEEEeeCCcC
Confidence 77777777653
No 139
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.30 E-value=1e-05 Score=70.29 Aligned_cols=109 Identities=12% Similarity=0.070 Sum_probs=72.0
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCcc
Q 025607 64 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK 142 (250)
Q Consensus 64 ~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~ 142 (250)
++|+.|+++++ .++.... ..+.++++|+.|++++|.++......+ ..+++|++|+++++ ++. ....+ ..+++|+
T Consensus 193 ~~L~~L~l~~n-~i~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~-lp~~l-~~l~~L~ 267 (332)
T 2ft3_A 193 ETLNELHLDHN-KIQAIEL-EDLLRYSKLYRLGLGHNQIRMIENGSL-SFLPTLRELHLDNNKLSR-VPAGL-PDLKLLQ 267 (332)
T ss_dssp SSCSCCBCCSS-CCCCCCT-TSSTTCTTCSCCBCCSSCCCCCCTTGG-GGCTTCCEEECCSSCCCB-CCTTG-GGCTTCC
T ss_pred CCCCEEECCCC-cCCccCH-HHhcCCCCCCEEECCCCcCCcCChhHh-hCCCCCCEEECCCCcCee-cChhh-hcCccCC
Confidence 68999999876 3432211 235678899999999986654222222 45789999999887 541 11112 3788999
Q ss_pred EEEeecCCCCHHHHHHHHhc-----CCCCcEEeeeCCCCc
Q 025607 143 VLSLRCTTLNRDALILILDG-----LQNLEVLNISHCLLI 177 (250)
Q Consensus 143 ~L~L~~~~itd~~l~~i~~~-----c~~L~~Ldls~C~~i 177 (250)
.|+++.+.++..+...+... .+.|+.|++++++..
T Consensus 268 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 268 VVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp EEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred EEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 99998888886544433221 467889999988754
No 140
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.30 E-value=5e-06 Score=68.79 Aligned_cols=108 Identities=15% Similarity=0.148 Sum_probs=71.1
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCC-CCHHHHHHHHHhCCCCceeEecC-C-CCHHHHHHHHhcCCC
Q 025607 64 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIA-NPPYLMEEIAQNCRNFRELKIMG-P-FDLLFASTLNMYLPK 140 (250)
Q Consensus 64 ~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~-~~d~~l~~i~~~c~~L~~L~L~~-~-i~d~~~~~i~~~~~~ 140 (250)
++|+.|+|+++ .++.-. ...+.++++|+.|++++|. ++.-... ....+++|++|++++ . ++.-....+ ..+++
T Consensus 31 ~~l~~L~l~~n-~l~~i~-~~~~~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i~~~~f-~~l~~ 106 (239)
T 2xwt_C 31 PSTQTLKLIET-HLRTIP-SHAFSNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYIDPDAL-KELPL 106 (239)
T ss_dssp TTCCEEEEESC-CCSEEC-TTTTTTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEECTTSE-ECCTT
T ss_pred CcccEEEEeCC-cceEEC-HHHccCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEcCHHHh-CCCCC
Confidence 47999999976 344211 1135679999999999995 6532111 124689999999987 4 442111112 36889
Q ss_pred ccEEEeecCCCCHHHHHHHHhcCCCCc---EEeeeCCCCcC
Q 025607 141 LKVLSLRCTTLNRDALILILDGLQNLE---VLNISHCLLID 178 (250)
Q Consensus 141 L~~L~L~~~~itd~~l~~i~~~c~~L~---~Ldls~C~~i~ 178 (250)
|++|++.++.++. +.. ...+++|+ +|+++++..++
T Consensus 107 L~~L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~ 144 (239)
T 2xwt_C 107 LKFLGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMT 144 (239)
T ss_dssp CCEEEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCC
T ss_pred CCEEeCCCCCCcc--ccc-cccccccccccEEECCCCcchh
Confidence 9999997777765 333 45677777 88888884443
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.21 E-value=3.1e-05 Score=74.85 Aligned_cols=107 Identities=14% Similarity=0.147 Sum_probs=76.1
Q ss_pred cCCCccEEEecCCCCC--CHHHHHHHHhhCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHh
Q 025607 36 SRGSIRTLIFHFNLYV--SDDQLTYTAERCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQN 113 (250)
Q Consensus 36 ~~~~l~~L~l~~~~~i--~d~~L~~i~~~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~ 113 (250)
....|+.|+++.+... ... +. .+++|++|+|+++ .++ .+...+.++++|+.|+|++|.++ .....+ ..
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~~~----~~-~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~~ 291 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNISAN----IF-KYDFLTRLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL-GS 291 (727)
T ss_dssp CCCCCCEEECTTSCCSCCCGG----GG-GCCSCSCCBCTTS-CCS--CCCGGGGGGTTCCEEECTTSCCS-SCCSSG-GG
T ss_pred cCCCCcEEECCCCCCCCCChh----hc-CCCCCCEEEeeCC-cCc--ccChhhhCCCCCCEEeCcCCcCC-ccChhh-cC
Confidence 3567889999876532 222 22 6899999999976 555 34444678999999999999776 222223 45
Q ss_pred CCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHH
Q 025607 114 CRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRD 154 (250)
Q Consensus 114 c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~ 154 (250)
+++|+.|+|+++ ++. .-..+ ..+++|+.|+|++|.++..
T Consensus 292 l~~L~~L~L~~N~l~~-lp~~~-~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTT-LPWEF-GNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp GTTCSEEECCSSCCCC-CCSST-TSCTTCCCEECTTSCCCSH
T ss_pred CCCCCEEECCCCCCCc-cChhh-hcCCCccEEeCCCCccCCC
Confidence 799999999988 541 11123 3789999999999998843
No 142
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.20 E-value=9.9e-05 Score=67.31 Aligned_cols=33 Identities=15% Similarity=0.007 Sum_probs=15.5
Q ss_pred CCccEEEecCCCCCCHHHHHHHHhhCCCCcEEEcCCC
Q 025607 38 GSIRTLIFHFNLYVSDDQLTYTAERCPQLKRLVMPAW 74 (250)
Q Consensus 38 ~~l~~L~l~~~~~i~d~~L~~i~~~c~~L~~L~L~~c 74 (250)
+.++.|+++++. ++. +.. ...+++|++|+++++
T Consensus 131 ~~L~~L~L~~n~-l~~--lp~-~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 131 PLLEYLGVSNNQ-LEK--LPE-LQNSSFLKIIDVDNN 163 (454)
T ss_dssp TTCCEEECCSSC-CSS--CCC-CTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCC-CCC--Ccc-cCCCCCCCEEECCCC
Confidence 456666665542 221 111 234555666666554
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.14 E-value=3.1e-05 Score=61.32 Aligned_cols=85 Identities=14% Similarity=0.042 Sum_probs=49.1
Q ss_pred CCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcE
Q 025607 90 RDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEV 168 (250)
Q Consensus 90 ~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~ 168 (250)
++|+.|+|+++.++.-.... ...+++|+.|+|+++ ++.-. ..+...+++|+.|+|+.|.++.-. ...+.++++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~ 109 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGV-FDHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNHLKSIP-RGAFDNLKSLTH 109 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCSE
T ss_pred CCCcEEEeCCCCccccCHHH-hcCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCCccceeC-HHHhccccCCCE
Confidence 56677777766543211111 124567777777665 33210 011236788888888777777311 122456788999
Q ss_pred EeeeCCCCc
Q 025607 169 LNISHCLLI 177 (250)
Q Consensus 169 Ldls~C~~i 177 (250)
|+++++...
T Consensus 110 L~L~~N~~~ 118 (174)
T 2r9u_A 110 IYLYNNPWD 118 (174)
T ss_dssp EECCSSCBC
T ss_pred EEeCCCCcc
Confidence 998887644
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.12 E-value=4.7e-05 Score=61.27 Aligned_cols=85 Identities=16% Similarity=0.191 Sum_probs=61.3
Q ss_pred CCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcE
Q 025607 90 RDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEV 168 (250)
Q Consensus 90 ~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~ 168 (250)
++|++|+++++.++. +......+++|+.|+++++ ++.-...++ ..+++|++|+|+.|.++.-.-. .+.++++|++
T Consensus 31 ~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f-~~l~~L~~L~Ls~N~l~~i~~~-~f~~l~~L~~ 106 (193)
T 2wfh_A 31 RDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSF-SNMTQLLTLILSYNRLRCIPPR-TFDGLKSLRL 106 (193)
T ss_dssp TTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCE
T ss_pred CCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHc-cCCCCCCEEECCCCccCEeCHH-HhCCCCCCCE
Confidence 689999999997652 1123356899999999988 543222223 3789999999988888753221 2457899999
Q ss_pred EeeeCCCCcC
Q 025607 169 LNISHCLLID 178 (250)
Q Consensus 169 Ldls~C~~i~ 178 (250)
|+++++..-+
T Consensus 107 L~L~~N~l~~ 116 (193)
T 2wfh_A 107 LSLHGNDISV 116 (193)
T ss_dssp EECCSSCCCB
T ss_pred EECCCCCCCe
Confidence 9999987544
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.01 E-value=4.8e-05 Score=59.90 Aligned_cols=84 Identities=15% Similarity=0.060 Sum_probs=46.4
Q ss_pred CCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcE
Q 025607 90 RDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEV 168 (250)
Q Consensus 90 ~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~ 168 (250)
++|+.|+|++|.++.-....+ ..+++|++|+++++ ++.-.. .+...+++|++|+|+.|.++.-. ...+.++++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~ 106 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVF-DRLTQLTRLDLDNNQLTVLPA-GVFDKLTQLTQLSLNDNQLKSIP-RGAFDNLKSLTH 106 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTT-TTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCE
T ss_pred CCCcEEEcCCCcCCccChhhh-cCcccCCEEECCCCCcCccCh-hhccCCCCCCEEECCCCccCEeC-HHHhcCCCCCCE
Confidence 566666666664432111111 23566777777665 331110 11136778888888777766311 123456788888
Q ss_pred EeeeCCCC
Q 025607 169 LNISHCLL 176 (250)
Q Consensus 169 Ldls~C~~ 176 (250)
|++++..-
T Consensus 107 L~L~~N~~ 114 (170)
T 3g39_A 107 IWLLNNPW 114 (170)
T ss_dssp EECCSSCB
T ss_pred EEeCCCCC
Confidence 88888754
No 146
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.99 E-value=2.9e-05 Score=62.29 Aligned_cols=87 Identities=10% Similarity=0.072 Sum_probs=61.7
Q ss_pred CCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcE
Q 025607 90 RDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEV 168 (250)
Q Consensus 90 ~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~ 168 (250)
++|++|+++++.++.-.........++|++|+++++ ++.-...++. .+++|++|+|+.+.++...- ..+.++++|++
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~ 106 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE-GASHIQELQLGENKIKEISN-KMFLGLHQLKT 106 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSCCCCEECS-SSSTTCTTCCE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcC-CcccCCEEECCCCcCCccCH-HHhcCCCCCCE
Confidence 489999999997653222222356899999999988 5432222233 78999999999898885322 12456899999
Q ss_pred EeeeCCCCcC
Q 025607 169 LNISHCLLID 178 (250)
Q Consensus 169 Ldls~C~~i~ 178 (250)
|+++++..-+
T Consensus 107 L~L~~N~l~~ 116 (192)
T 1w8a_A 107 LNLYDNQISC 116 (192)
T ss_dssp EECCSSCCCE
T ss_pred EECCCCcCCe
Confidence 9999996543
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.96 E-value=0.00013 Score=63.25 Aligned_cols=46 Identities=13% Similarity=0.186 Sum_probs=20.7
Q ss_pred CCHHHHHHHHhhCCCCcEEEcCCC--CCCCHHHHHHHHhcCCCCCEEEecCC
Q 025607 51 VSDDQLTYTAERCPQLKRLVMPAW--NRIKKTGICKAIRMWRDLESLTMPSI 100 (250)
Q Consensus 51 i~d~~L~~i~~~c~~L~~L~L~~c--~~itd~~l~~~~~~c~~L~~L~Ls~c 100 (250)
+....+..+...|++|+.|+|+++ ..+.+ ..+.+|++|++|+++.+
T Consensus 213 l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~----~aF~~~~~L~~l~l~~n 260 (329)
T 3sb4_A 213 LDNADFKLIRDYMPNLVSLDISKTNATTIPD----FTFAQKKYLLKIKLPHN 260 (329)
T ss_dssp CCHHHHHHHHHHCTTCCEEECTTBCCCEECT----TTTTTCTTCCEEECCTT
T ss_pred ecHHHHHHHHHhcCCCeEEECCCCCcceecH----hhhhCCCCCCEEECCcc
Confidence 334444444444555555555542 11211 12345555555555543
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.83 E-value=0.00014 Score=57.24 Aligned_cols=86 Identities=10% Similarity=0.004 Sum_probs=58.7
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCc
Q 025607 63 CPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKL 141 (250)
Q Consensus 63 c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L 141 (250)
.++|+.|+|++. .++.-. ...+.++++|+.|+|++|.++.-. ..+...+++|++|+++++ ++.-.. .....+++|
T Consensus 29 ~~~l~~L~L~~N-~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L 104 (170)
T 3g39_A 29 PTTTQVLYLYDN-QITKLE-PGVFDRLTQLTRLDLDNNQLTVLP-AGVFDKLTQLTQLSLNDNQLKSIPR-GAFDNLKSL 104 (170)
T ss_dssp CTTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred CCCCcEEEcCCC-cCCccC-hhhhcCcccCCEEECCCCCcCccC-hhhccCCCCCCEEECCCCccCEeCH-HHhcCCCCC
Confidence 378999999976 443210 123568899999999999765211 122246799999999987 442111 112378999
Q ss_pred cEEEeecCCCC
Q 025607 142 KVLSLRCTTLN 152 (250)
Q Consensus 142 ~~L~L~~~~it 152 (250)
+.|+|.+|.++
T Consensus 105 ~~L~L~~N~~~ 115 (170)
T 3g39_A 105 THIWLLNNPWD 115 (170)
T ss_dssp CEEECCSSCBC
T ss_pred CEEEeCCCCCC
Confidence 99999888776
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.79 E-value=0.00016 Score=57.13 Aligned_cols=85 Identities=13% Similarity=0.052 Sum_probs=58.3
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCcc
Q 025607 64 PQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLK 142 (250)
Q Consensus 64 ~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~ 142 (250)
++|+.|+|++. .++.- ....+.++++|+.|+|++|.++.-. ..+...+++|+.|+++++ ++.-.. .....+++|+
T Consensus 33 ~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~ 108 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKL-EPGVFDHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNHLKSIPR-GAFDNLKSLT 108 (174)
T ss_dssp TTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCS
T ss_pred CCCcEEEeCCC-Ccccc-CHHHhcCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCCccceeCH-HHhccccCCC
Confidence 78999999976 34321 1234678899999999999765311 112246799999999987 442111 1123689999
Q ss_pred EEEeecCCCC
Q 025607 143 VLSLRCTTLN 152 (250)
Q Consensus 143 ~L~L~~~~it 152 (250)
.|+|.+|.++
T Consensus 109 ~L~L~~N~~~ 118 (174)
T 2r9u_A 109 HIYLYNNPWD 118 (174)
T ss_dssp EEECCSSCBC
T ss_pred EEEeCCCCcc
Confidence 9999888776
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.40 E-value=0.00023 Score=61.92 Aligned_cols=62 Identities=11% Similarity=0.081 Sum_probs=30.7
Q ss_pred hCCCCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC
Q 025607 62 RCPQLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP 125 (250)
Q Consensus 62 ~c~~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~ 125 (250)
..++|+.|+|++.+.++.-. ...+.++++|+.|+|++|.++.-.... ...+++|+.|+|+++
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKSGLRFVAPDA-FHFTPRLSRLNLSFN 90 (347)
T ss_dssp SCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSSCCCEECTTG-GGSCSCCCEEECCSS
T ss_pred CCCCeeEEEccCCCCCCCcC-hhHhccccCCCEEECCCCccceeCHHH-hcCCcCCCEEeCCCC
Confidence 34556677776534443210 012445666666666666544211111 123566666666555
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.53 E-value=0.0012 Score=57.36 Aligned_cols=104 Identities=16% Similarity=0.204 Sum_probs=61.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCCCEEEecC-CCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEE
Q 025607 68 RLVMPAWNRIKKTGICKAIRMWRDLESLTMPS-IANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLS 145 (250)
Q Consensus 68 ~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~-c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~ 145 (250)
.++.++.+.++. +.. +..+++|++|+|++ +.++.-.... ...+++|+.|+|+++ ++.-....+ ..+++|++|+
T Consensus 12 ~v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~l~~~~~~~-~~~l~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~L~ 86 (347)
T 2ifg_A 12 GLRCTRDGALDS--LHH-LPGAENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKSGLRFVAPDAF-HFTPRLSRLN 86 (347)
T ss_dssp CEECCSSCCCTT--TTT-SCSCSCCSEEECCSCSSCCEECGGG-SCSCCCCSEEECCSSCCCEECTTGG-GSCSCCCEEE
T ss_pred EEEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCCCCCcChhH-hccccCCCEEECCCCccceeCHHHh-cCCcCCCEEe
Confidence 344443323432 334 66777899999986 6654321111 235788999999887 432111122 3788999999
Q ss_pred eecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607 146 LRCTTLNRDALILILDGLQNLEVLNISHCLLID 178 (250)
Q Consensus 146 L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~ 178 (250)
|+.|.++.-. ..+....+ |+.|+++++....
T Consensus 87 l~~N~l~~~~-~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 87 LSFNALESLS-WKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSSCCSCCC-STTTCSCC-CCEEECCSSCCCC
T ss_pred CCCCccceeC-HHHcccCC-ceEEEeeCCCccC
Confidence 9888877311 11222333 8999998876543
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=95.51 E-value=0.0015 Score=56.38 Aligned_cols=99 Identities=11% Similarity=0.108 Sum_probs=62.4
Q ss_pred CCcEEEcCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCC---HHHHHHHHHhCCCCceeEecCC---CCHHHHHHHHhcC
Q 025607 65 QLKRLVMPAWNRIKKTGICKAIRMWRDLESLTMPSIANP---PYLMEEIAQNCRNFRELKIMGP---FDLLFASTLNMYL 138 (250)
Q Consensus 65 ~L~~L~L~~c~~itd~~l~~~~~~c~~L~~L~Ls~c~~~---d~~l~~i~~~c~~L~~L~L~~~---i~d~~~~~i~~~~ 138 (250)
+++.+.+.+ .+....+..+...|++|++|+|+++.++ +.++ ..|++|++|.++.. +.+... ..|
T Consensus 203 ~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF----~~~~~L~~l~l~~ni~~I~~~aF----~~~ 272 (329)
T 3sb4_A 203 DINFLTIEG--KLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTF----AQKKYLLKIKLPHNLKTIGQRVF----SNC 272 (329)
T ss_dssp GCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTT----TTCTTCCEEECCTTCCEECTTTT----TTC
T ss_pred ccceEEEee--eecHHHHHHHHHhcCCCeEEECCCCCcceecHhhh----hCCCCCCEEECCcccceehHHHh----hCC
Confidence 344555543 3556666666667899999999887443 3322 46888999998765 333221 378
Q ss_pred CCcc-EEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCC
Q 025607 139 PKLK-VLSLRCTTLNRDALILILDGLQNLEVLNISHCL 175 (250)
Q Consensus 139 ~~L~-~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~ 175 (250)
++|+ .+++.. .++.-+- ....+|++|+.|++++..
T Consensus 273 ~~L~~~l~l~~-~l~~I~~-~aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 273 GRLAGTLELPA-SVTAIEF-GAFMGCDNLRYVLATGDK 308 (329)
T ss_dssp TTCCEEEEECT-TCCEECT-TTTTTCTTEEEEEECSSC
T ss_pred hhccEEEEEcc-cceEEch-hhhhCCccCCEEEeCCCc
Confidence 8898 888844 3332111 124578999999886553
No 153
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=94.51 E-value=0.00046 Score=60.37 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=7.9
Q ss_pred hcCCCCCEEEecCCC
Q 025607 87 RMWRDLESLTMPSIA 101 (250)
Q Consensus 87 ~~c~~L~~L~Ls~c~ 101 (250)
.++++|++|+|++|.
T Consensus 51 ~~l~~L~~L~Ls~N~ 65 (350)
T 4ay9_X 51 SGFGDLEKIEISQND 65 (350)
T ss_dssp TTCTTCCEEEEECCT
T ss_pred cCCCCCCEEECcCCC
Confidence 445555555555553
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=93.51 E-value=0.0043 Score=55.57 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=7.1
Q ss_pred cCCCccEEEeecC
Q 025607 137 YLPKLKVLSLRCT 149 (250)
Q Consensus 137 ~~~~L~~L~L~~~ 149 (250)
.|++|+.+.+..+
T Consensus 269 ~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 269 YCPELAEVTTYGS 281 (401)
T ss_dssp TCTTCCEEEEESS
T ss_pred CCCCCCEEEeCCc
Confidence 4556666666433
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.79 E-value=0.017 Score=51.10 Aligned_cols=13 Identities=23% Similarity=0.347 Sum_probs=6.3
Q ss_pred hcCCCCCEEEecC
Q 025607 87 RMWRDLESLTMPS 99 (250)
Q Consensus 87 ~~c~~L~~L~Ls~ 99 (250)
.+|.+|+++.|..
T Consensus 308 ~~c~~L~~i~lp~ 320 (394)
T 4gt6_A 308 AGCISLKSIDIPE 320 (394)
T ss_dssp TTCTTCCEEECCT
T ss_pred cCCCCcCEEEeCC
Confidence 3455555555443
No 156
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=92.62 E-value=0.0048 Score=53.75 Aligned_cols=86 Identities=16% Similarity=0.123 Sum_probs=51.6
Q ss_pred CCCCEEEecCCCCCHHHHHHHHHhCCCCceeEecCC-CCHHHHHHHHhcCCCccEEEe-ecCCCCHHHHHHHHhcCCCCc
Q 025607 90 RDLESLTMPSIANPPYLMEEIAQNCRNFRELKIMGP-FDLLFASTLNMYLPKLKVLSL-RCTTLNRDALILILDGLQNLE 167 (250)
Q Consensus 90 ~~L~~L~Ls~c~~~d~~l~~i~~~c~~L~~L~L~~~-i~d~~~~~i~~~~~~L~~L~L-~~~~itd~~l~~i~~~c~~L~ 167 (250)
+++++|+|+++.++.-. ...-..+++|++|+|+++ +....-......+++|+++.+ .++.++.-. .....++++|+
T Consensus 30 ~~l~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~~L~ 107 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQ-KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNLQ 107 (350)
T ss_dssp TTCSEEEEESCCCSEEC-TTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC-TTSBCCCTTCC
T ss_pred CCCCEEEccCCcCCCcC-HHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC-chhhhhccccc
Confidence 57999999998765211 111246799999999887 321100011125677766544 777766321 11235678888
Q ss_pred EEeeeCCCCc
Q 025607 168 VLNISHCLLI 177 (250)
Q Consensus 168 ~Ldls~C~~i 177 (250)
+|+++++...
T Consensus 108 ~L~l~~n~l~ 117 (350)
T 4ay9_X 108 YLLISNTGIK 117 (350)
T ss_dssp EEEEEEECCS
T ss_pred cccccccccc
Confidence 8888887543
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.10 E-value=0.067 Score=47.16 Aligned_cols=98 Identities=16% Similarity=0.202 Sum_probs=65.2
Q ss_pred hhCCCCcEEEcCCC-CCCCHHHHHHHHhcCCCCCEEEecCC--CCCHHHHHHHHHhCCCCceeEecCC---CCHHHHHHH
Q 025607 61 ERCPQLKRLVMPAW-NRIKKTGICKAIRMWRDLESLTMPSI--ANPPYLMEEIAQNCRNFRELKIMGP---FDLLFASTL 134 (250)
Q Consensus 61 ~~c~~L~~L~L~~c-~~itd~~l~~~~~~c~~L~~L~Ls~c--~~~d~~l~~i~~~c~~L~~L~L~~~---i~d~~~~~i 134 (250)
..|++|+.+.++.. ..+.. ..+.+|+.|+.+.+... .+.+.++ ..|++|+++.+... +.+...
T Consensus 262 ~~c~~L~~i~lp~~~~~I~~----~aF~~c~~L~~i~l~~~i~~I~~~aF----~~c~~L~~i~lp~~v~~I~~~aF--- 330 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVVSIGT----GAFMNCPALQDIEFSSRITELPESVF----AGCISLKSIDIPEGITQILDDAF--- 330 (394)
T ss_dssp TTCSSCCEEECCTTCCEECT----TTTTTCTTCCEEECCTTCCEECTTTT----TTCTTCCEEECCTTCCEECTTTT---
T ss_pred eecccccEEecccccceecC----cccccccccccccCCCcccccCceee----cCCCCcCEEEeCCcccEehHhHh---
Confidence 46788888888643 12222 23567899999998754 3344333 46899999999765 444322
Q ss_pred HhcCCCccEEEeec--CCCCHHHHHHHHhcCCCCcEEeeeCC
Q 025607 135 NMYLPKLKVLSLRC--TTLNRDALILILDGLQNLEVLNISHC 174 (250)
Q Consensus 135 ~~~~~~L~~L~L~~--~~itd~~l~~i~~~c~~L~~Ldls~C 174 (250)
..|.+|+++.|.. ..|.+.+ ..+|++|+.+++.+.
T Consensus 331 -~~C~~L~~i~ip~sv~~I~~~a----F~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 331 -AGCEQLERIAIPSSVTKIPESA----FSNCTALNNIEYSGS 367 (394)
T ss_dssp -TTCTTCCEEEECTTCCBCCGGG----GTTCTTCCEEEESSC
T ss_pred -hCCCCCCEEEECcccCEEhHhH----hhCCCCCCEEEECCc
Confidence 3789999999932 3354433 468999999998764
No 158
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=90.78 E-value=0.024 Score=35.31 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=28.2
Q ss_pred CCCCCcC----CcceeeecCCCchHHHHHHHHHHH--hcCCCccEE
Q 025607 4 SNYIKIP----LEPYVYVHGHSDKQLTRILKISLS--LSRGSIRTL 43 (250)
Q Consensus 4 ~~~~~~p----l~if~~l~~~~~~~l~~v~~~~~~--~~~~~l~~L 43 (250)
..+..+| .+||+|++..++.+++.|||.+.. .+...|+.+
T Consensus 7 ~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp --CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred CCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 4567788 899999999999999999998433 344445543
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=85.99 E-value=0.15 Score=45.44 Aligned_cols=126 Identities=10% Similarity=0.108 Sum_probs=76.1
Q ss_pred CCCccEEEecCC-CCCCHHHHHHHHhhCCCCcEEEcCCC-CCCCHHHHHHHHhcCCCCCEEEecCCCCCHHHH----HHH
Q 025607 37 RGSIRTLIFHFN-LYVSDDQLTYTAERCPQLKRLVMPAW-NRIKKTGICKAIRMWRDLESLTMPSIANPPYLM----EEI 110 (250)
Q Consensus 37 ~~~l~~L~l~~~-~~i~d~~L~~i~~~c~~L~~L~L~~c-~~itd~~l~~~~~~c~~L~~L~Ls~c~~~d~~l----~~i 110 (250)
+..|+.+.++.. ..+.+..+ ...+|+.+.|+.. ..+.+ ..+.+|++|+.+.+.++.+..... ...
T Consensus 225 ~~~L~~l~l~~~l~~I~~~aF-----~~~~L~~i~lp~~i~~I~~----~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a 295 (401)
T 4fdw_A 225 TSQLKTIEIPENVSTIGQEAF-----RESGITTVKLPNGVTNIAS----RAFYYCPELAEVTTYGSTFNDDPEAMIHPYC 295 (401)
T ss_dssp CTTCCCEECCTTCCEECTTTT-----TTCCCSEEEEETTCCEECT----TTTTTCTTCCEEEEESSCCCCCTTCEECTTT
T ss_pred CCCCCEEecCCCccCcccccc-----ccCCccEEEeCCCccEECh----hHhhCCCCCCEEEeCCccccCCcccEECHHH
Confidence 456666666431 12233333 2268999999642 22332 246789999999998873321111 112
Q ss_pred HHhCCCCceeEecCC---CCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEEeeeCCCCcC
Q 025607 111 AQNCRNFRELKIMGP---FDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVLNISHCLLID 178 (250)
Q Consensus 111 ~~~c~~L~~L~L~~~---i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~Ldls~C~~i~ 178 (250)
-..|++|+.+.+... +.+... ..|++|+.+.|..+ ++.-+-. ...+| +|+.|++++...-+
T Consensus 296 F~~c~~L~~l~l~~~i~~I~~~aF----~~c~~L~~l~lp~~-l~~I~~~-aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 296 LEGCPKLARFEIPESIRILGQGLL----GGNRKVTQLTIPAN-VTQINFS-AFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp TTTCTTCCEECCCTTCCEECTTTT----TTCCSCCEEEECTT-CCEECTT-SSSSS-CCCEEEECCSSCCB
T ss_pred hhCCccCCeEEeCCceEEEhhhhh----cCCCCccEEEECcc-ccEEcHH-hCCCC-CCCEEEEcCCCCcc
Confidence 257999999999765 333322 37899999999332 3321111 23578 99999999886544
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=76.89 E-value=0.28 Score=42.62 Aligned_cols=75 Identities=17% Similarity=0.260 Sum_probs=34.5
Q ss_pred HhcCCCCCEEEecCC--CCCHHHHHHHHHhCCCCceeEecCC----CCHHHHHHHHhcCCCccEEEeec--CCCCHHHHH
Q 025607 86 IRMWRDLESLTMPSI--ANPPYLMEEIAQNCRNFRELKIMGP----FDLLFASTLNMYLPKLKVLSLRC--TTLNRDALI 157 (250)
Q Consensus 86 ~~~c~~L~~L~Ls~c--~~~d~~l~~i~~~c~~L~~L~L~~~----i~d~~~~~i~~~~~~L~~L~L~~--~~itd~~l~ 157 (250)
+..|..|+.+.+... .+...+ -..|++|+++.+... +.+... ..|.+|+.+.|.. ..|.+.+
T Consensus 259 F~~~~~l~~i~l~~~i~~i~~~a----F~~c~~L~~i~l~~~~i~~I~~~aF----~~c~~L~~i~lp~~l~~I~~~a-- 328 (379)
T 4h09_A 259 LQNCTALKTLNFYAKVKTVPYLL----CSGCSNLTKVVMDNSAIETLEPRVF----MDCVKLSSVTLPTALKTIQVYA-- 328 (379)
T ss_dssp TTTCTTCCEEEECCCCSEECTTT----TTTCTTCCEEEECCTTCCEECTTTT----TTCTTCCEEECCTTCCEECTTT--
T ss_pred cceeehhccccccccceeccccc----cccccccccccccccccceehhhhh----cCCCCCCEEEcCccccEEHHHH--
Confidence 345555665555433 112211 134666666666432 222211 2566666666621 1233222
Q ss_pred HHHhcCCCCcEEeee
Q 025607 158 LILDGLQNLEVLNIS 172 (250)
Q Consensus 158 ~i~~~c~~L~~Ldls 172 (250)
..+|++|+.+.+.
T Consensus 329 --F~~C~~L~~i~ip 341 (379)
T 4h09_A 329 --FKNCKALSTISYP 341 (379)
T ss_dssp --TTTCTTCCCCCCC
T ss_pred --hhCCCCCCEEEEC
Confidence 2456666666553
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=75.65 E-value=0.28 Score=43.05 Aligned_cols=75 Identities=9% Similarity=0.113 Sum_probs=37.8
Q ss_pred hcCCCCCEEEecCC--CCCHHHHHHHHHhCCCCceeEecCC---CCHHHHHHHHhcCCCccEEEeecC--CCCHHHHHHH
Q 025607 87 RMWRDLESLTMPSI--ANPPYLMEEIAQNCRNFRELKIMGP---FDLLFASTLNMYLPKLKVLSLRCT--TLNRDALILI 159 (250)
Q Consensus 87 ~~c~~L~~L~Ls~c--~~~d~~l~~i~~~c~~L~~L~L~~~---i~d~~~~~i~~~~~~L~~L~L~~~--~itd~~l~~i 159 (250)
..|.+|+++.+... .+.+.++ ..|++|+++.+... +.+.. . ..|.+|+.+.+..+ .|.+.+
T Consensus 294 ~~~~~L~~i~l~~~i~~I~~~aF----~~c~~L~~i~lp~~v~~I~~~a---F-~~c~~L~~i~lp~~l~~I~~~a---- 361 (394)
T 4fs7_A 294 YGCSSLTEVKLLDSVKFIGEEAF----ESCTSLVSIDLPYLVEEIGKRS---F-RGCTSLSNINFPLSLRKIGANA---- 361 (394)
T ss_dssp TTCTTCCEEEECTTCCEECTTTT----TTCTTCCEECCCTTCCEECTTT---T-TTCTTCCEECCCTTCCEECTTT----
T ss_pred cccccccccccccccceechhhh----cCCCCCCEEEeCCcccEEhHHh---c-cCCCCCCEEEECccccEehHHH----
Confidence 35566666665543 2222221 34667777766543 22221 1 25677777777322 222222
Q ss_pred HhcCCCCcEEeeeC
Q 025607 160 LDGLQNLEVLNISH 173 (250)
Q Consensus 160 ~~~c~~L~~Ldls~ 173 (250)
..+|++|+.+++..
T Consensus 362 F~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 362 FQGCINLKKVELPK 375 (394)
T ss_dssp BTTCTTCCEEEEEG
T ss_pred hhCCCCCCEEEECC
Confidence 34677777776654
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=74.36 E-value=0.47 Score=41.58 Aligned_cols=94 Identities=13% Similarity=0.149 Sum_probs=60.0
Q ss_pred hhCCCCcEEEcCCC-CCCCHHHHHHHHhcCCCCCEEEecCC--CCCHHHHHHHHHhCCCCceeEecCC---CCHHHHHHH
Q 025607 61 ERCPQLKRLVMPAW-NRIKKTGICKAIRMWRDLESLTMPSI--ANPPYLMEEIAQNCRNFRELKIMGP---FDLLFASTL 134 (250)
Q Consensus 61 ~~c~~L~~L~L~~c-~~itd~~l~~~~~~c~~L~~L~Ls~c--~~~d~~l~~i~~~c~~L~~L~L~~~---i~d~~~~~i 134 (250)
..|++|+.+.++.. ..|.+ .++.+|.+|++++|... .+.+.++ ..|++|+++.+... +.+.. .
T Consensus 294 ~~~~~L~~i~l~~~i~~I~~----~aF~~c~~L~~i~lp~~v~~I~~~aF----~~c~~L~~i~lp~~l~~I~~~a---F 362 (394)
T 4fs7_A 294 YGCSSLTEVKLLDSVKFIGE----EAFESCTSLVSIDLPYLVEEIGKRSF----RGCTSLSNINFPLSLRKIGANA---F 362 (394)
T ss_dssp TTCTTCCEEEECTTCCEECT----TTTTTCTTCCEECCCTTCCEECTTTT----TTCTTCCEECCCTTCCEECTTT---B
T ss_pred cccccccccccccccceech----hhhcCCCCCCEEEeCCcccEEhHHhc----cCCCCCCEEEECccccEehHHH---h
Confidence 46788888888642 22333 23678999999999764 3444433 46999999999765 33332 2
Q ss_pred HhcCCCccEEEeecCCCCHHHHHHHHhcCCCCcEE
Q 025607 135 NMYLPKLKVLSLRCTTLNRDALILILDGLQNLEVL 169 (250)
Q Consensus 135 ~~~~~~L~~L~L~~~~itd~~l~~i~~~c~~L~~L 169 (250)
..|++|+.+.+..+ ++.- ..-..+|++|+.+
T Consensus 363 -~~C~~L~~i~lp~~-~~~~--~~~F~~c~~L~~I 393 (394)
T 4fs7_A 363 -QGCINLKKVELPKR-LEQY--RYDFEDTTKFKWI 393 (394)
T ss_dssp -TTCTTCCEEEEEGG-GGGG--GGGBCTTCEEEEE
T ss_pred -hCCCCCCEEEECCC-CEEh--hheecCCCCCcEE
Confidence 37999999999432 2211 1224567777764
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=57.10 E-value=1.3 Score=38.26 Aligned_cols=82 Identities=11% Similarity=0.169 Sum_probs=45.9
Q ss_pred HhcCCCCCEEEecCC--CCCHHHHHHHHHhCCCCceeEecCCCCHHHHHHHHhcCCCccEEEeecCCCCHHHHHHHHhcC
Q 025607 86 IRMWRDLESLTMPSI--ANPPYLMEEIAQNCRNFRELKIMGPFDLLFASTLNMYLPKLKVLSLRCTTLNRDALILILDGL 163 (250)
Q Consensus 86 ~~~c~~L~~L~Ls~c--~~~d~~l~~i~~~c~~L~~L~L~~~i~d~~~~~i~~~~~~L~~L~L~~~~itd~~l~~i~~~c 163 (250)
...|..|+.+.+... .+.+.+ ...|.+|+.+.+...++.-+-.+ ...|++|+.+.+..+.++.-+- ....+|
T Consensus 236 f~~~~~L~~i~lp~~v~~I~~~a----F~~~~~l~~i~l~~~i~~i~~~a-F~~c~~L~~i~l~~~~i~~I~~-~aF~~c 309 (379)
T 4h09_A 236 FYGMKALDEIAIPKNVTSIGSFL----LQNCTALKTLNFYAKVKTVPYLL-CSGCSNLTKVVMDNSAIETLEP-RVFMDC 309 (379)
T ss_dssp TTTCSSCCEEEECTTCCEECTTT----TTTCTTCCEEEECCCCSEECTTT-TTTCTTCCEEEECCTTCCEECT-TTTTTC
T ss_pred ccCCccceEEEcCCCccEeCccc----cceeehhccccccccceeccccc-cccccccccccccccccceehh-hhhcCC
Confidence 345667777776553 222222 23577788887765422111111 1378899999985554432111 123578
Q ss_pred CCCcEEeeeC
Q 025607 164 QNLEVLNISH 173 (250)
Q Consensus 164 ~~L~~Ldls~ 173 (250)
++|+.+++..
T Consensus 310 ~~L~~i~lp~ 319 (379)
T 4h09_A 310 VKLSSVTLPT 319 (379)
T ss_dssp TTCCEEECCT
T ss_pred CCCCEEEcCc
Confidence 8999988853
No 164
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=43.63 E-value=0.59 Score=40.13 Aligned_cols=37 Identities=16% Similarity=0.078 Sum_probs=29.1
Q ss_pred CCcC----CcceeeecCCCchHHHHHHHH--HHHhcCCCccEE
Q 025607 7 IKIP----LEPYVYVHGHSDKQLTRILKI--SLSLSRGSIRTL 43 (250)
Q Consensus 7 ~~~p----l~if~~l~~~~~~~l~~v~~~--~~~~~~~~l~~L 43 (250)
-++| +.||+||+.+++++++.||+. .++.+...|+.+
T Consensus 6 ~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~ 48 (312)
T 3l2o_B 6 TRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYF 48 (312)
T ss_dssp HHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHH
T ss_pred HhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 3567 899999999999999999999 445555555544
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=42.42 E-value=6 Score=28.98 Aligned_cols=10 Identities=30% Similarity=0.454 Sum_probs=5.0
Q ss_pred CCceeEecCC
Q 025607 116 NFRELKIMGP 125 (250)
Q Consensus 116 ~L~~L~L~~~ 125 (250)
+|++|+|+++
T Consensus 32 ~l~~L~Ls~N 41 (130)
T 3rfe_A 32 DTTELVLTGN 41 (130)
T ss_dssp TCSEEECTTS
T ss_pred CCCEEECCCC
Confidence 4555555444
No 166
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=34.31 E-value=11 Score=19.02 Aligned_cols=11 Identities=55% Similarity=1.260 Sum_probs=9.1
Q ss_pred hhccCccccccc
Q 025607 231 KYEEGLWKDDEV 242 (250)
Q Consensus 231 ~~~~~~~~~~~~ 242 (250)
.|| -.|+|+|.
T Consensus 14 kye-pfwedee~ 24 (26)
T 1nrp_R 14 KYE-PFWEDEEX 24 (26)
T ss_pred ccC-cccccccc
Confidence 677 89999985
No 167
>2li5_B Ubiquitin-like modifier-activating enzyme ATG7; autophagy, protein transport; NMR {Saccharomyces cerevisiae}
Probab=32.94 E-value=15 Score=19.71 Aligned_cols=11 Identities=36% Similarity=0.561 Sum_probs=8.2
Q ss_pred ccccccccccc
Q 025607 236 LWKDDEVLPAI 246 (250)
Q Consensus 236 ~~~~~~~~~~~ 246 (250)
-|+|||-++.+
T Consensus 24 eweddesdeia 34 (34)
T 2li5_B 24 EWEDDESDEIA 34 (34)
T ss_dssp CSSCTTSGGGC
T ss_pred ccccccccccC
Confidence 39999987753
No 168
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=32.24 E-value=3.9 Score=35.55 Aligned_cols=31 Identities=13% Similarity=-0.018 Sum_probs=25.0
Q ss_pred ceeeecCCCchHHHHHHHHH--HHhcCCCccEE
Q 025607 13 PYVYVHGHSDKQLTRILKIS--LSLSRGSIRTL 43 (250)
Q Consensus 13 if~~l~~~~~~~l~~v~~~~--~~~~~~~l~~L 43 (250)
||+||+..++.++++|||.+ +..+...|+.+
T Consensus 26 i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~ 58 (435)
T 1p22_A 26 ILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKL 58 (435)
T ss_dssp HHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 99999999999999999994 34455666654
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=31.79 E-value=19 Score=25.11 Aligned_cols=10 Identities=0% Similarity=0.232 Sum_probs=4.5
Q ss_pred CCCCcEEEcC
Q 025607 63 CPQLKRLVMP 72 (250)
Q Consensus 63 c~~L~~L~L~ 72 (250)
|.+|+++.++
T Consensus 19 c~~L~~i~iP 28 (100)
T 2lz0_A 19 NTVIREITVQ 28 (100)
T ss_dssp CTTCCCEEEC
T ss_pred CCCCcEEEcC
Confidence 4444444443
No 170
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=29.79 E-value=13 Score=18.87 Aligned_cols=12 Identities=50% Similarity=1.019 Sum_probs=9.2
Q ss_pred hhccCcccccccc
Q 025607 231 KYEEGLWKDDEVL 243 (250)
Q Consensus 231 ~~~~~~~~~~~~~ 243 (250)
.|+ -.|+|+|-.
T Consensus 14 kye-pfwedeekn 25 (27)
T 1nro_R 14 KYE-PFWEDEEKN 25 (27)
T ss_pred ccC-ccccchhhc
Confidence 677 899998843
No 171
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=22.00 E-value=8.2 Score=33.51 Aligned_cols=37 Identities=11% Similarity=0.063 Sum_probs=28.0
Q ss_pred CCcC----CcceeeecCCCchHHHHHHHHHHH--hc-CCCccEE
Q 025607 7 IKIP----LEPYVYVHGHSDKQLTRILKISLS--LS-RGSIRTL 43 (250)
Q Consensus 7 ~~~p----l~if~~l~~~~~~~l~~v~~~~~~--~~-~~~l~~L 43 (250)
..+| ++||+||+..++.++++|||.+.. .+ ...|+.+
T Consensus 16 ~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~ 59 (464)
T 3v7d_B 16 TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKL 59 (464)
T ss_dssp HHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHH
T ss_pred HHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3577 899999999999999999999544 23 3345544
No 172
>2l7x_A Envelope glycoprotein; cytoplasmic tail, viral protein; NMR {Crimean-congo hemorrhagic fever virus}
Probab=20.50 E-value=34 Score=22.36 Aligned_cols=21 Identities=24% Similarity=0.661 Sum_probs=16.9
Q ss_pred cccccccccccccccccchhh
Q 025607 209 CMEDSCIMCQRTKNDEGIMRW 229 (250)
Q Consensus 209 c~~~~c~~c~~~~~~~~~~~~ 229 (250)
|+=.-|++|.+.+.++|+.|-
T Consensus 28 Cs~NiCPYC~nRls~eGl~RH 48 (77)
T 2l7x_A 28 CSYNICPYCASRLTSDGLARH 48 (77)
T ss_dssp HTTTCCTTTCCCCCTTTHHHH
T ss_pred CCcccChhhhccCCccchhhh
Confidence 444579999999999997664
Done!