Query 025608
Match_columns 250
No_of_seqs 152 out of 1361
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 13:48:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025608.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025608hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wd2_A Ariadne-1 protein homol 99.8 6.1E-20 2.1E-24 116.3 2.9 50 199-250 4-56 (60)
2 1wim_A KIAA0161 protein; ring 99.7 1.2E-17 4.2E-22 116.9 7.8 87 39-125 3-92 (94)
3 2ct7_A Ring finger protein 31; 99.3 8.5E-14 2.9E-18 95.2 -3.2 73 107-183 3-79 (86)
4 2jmo_A Parkin; IBR, E3 ligase, 99.3 1.8E-13 6.2E-18 92.1 -2.4 69 105-176 2-75 (80)
5 4ap4_A E3 ubiquitin ligase RNF 99.0 1.8E-11 6.3E-16 90.5 -1.3 118 39-214 5-126 (133)
6 3hcs_A TNF receptor-associated 98.8 2.3E-09 7.7E-14 82.8 4.9 101 37-160 14-120 (170)
7 2ct2_A Tripartite motif protei 98.7 9.4E-09 3.2E-13 70.2 5.0 64 36-105 10-74 (88)
8 2ecv_A Tripartite motif-contai 98.6 4.6E-08 1.6E-12 66.2 4.2 62 35-102 13-74 (85)
9 2egp_A Tripartite motif-contai 98.6 9.9E-09 3.4E-13 68.6 0.7 60 39-103 10-69 (79)
10 2ecy_A TNF receptor-associated 98.6 7.1E-08 2.4E-12 62.1 4.5 54 37-101 11-64 (66)
11 1jm7_A BRCA1, breast cancer ty 98.5 1.2E-07 4.2E-12 67.6 6.2 69 42-119 22-91 (112)
12 1rmd_A RAG1; V(D)J recombinati 98.5 5E-08 1.7E-12 70.3 4.1 82 40-143 22-103 (116)
13 2ecw_A Tripartite motif-contai 98.5 5.5E-08 1.9E-12 65.8 4.1 62 35-102 13-74 (85)
14 2djb_A Polycomb group ring fin 98.5 7E-08 2.4E-12 63.3 4.5 58 37-105 11-68 (72)
15 2kiz_A E3 ubiquitin-protein li 98.5 1.5E-07 5.2E-12 61.1 5.5 54 37-99 10-63 (69)
16 3ng2_A RNF4, snurf, ring finge 98.5 3.2E-08 1.1E-12 64.7 2.0 57 39-104 8-68 (71)
17 2xeu_A Ring finger protein 4; 98.5 3.1E-08 1.1E-12 63.3 1.8 56 41-105 3-62 (64)
18 2ecm_A Ring finger and CHY zin 98.5 1E-07 3.5E-12 58.9 4.1 50 40-98 4-54 (55)
19 2ysl_A Tripartite motif-contai 98.5 3.7E-08 1.3E-12 64.8 2.0 56 37-101 16-71 (73)
20 1g25_A CDK-activating kinase a 98.5 4.7E-08 1.6E-12 62.8 2.0 57 41-105 3-61 (65)
21 2ect_A Ring finger protein 126 98.5 4.7E-08 1.6E-12 65.2 2.0 57 38-103 12-68 (78)
22 2ep4_A Ring finger protein 24; 98.5 1.6E-07 5.5E-12 61.9 4.6 52 38-98 12-63 (74)
23 1e4u_A Transcriptional repress 98.4 9.1E-08 3.1E-12 63.8 2.9 56 39-102 9-65 (78)
24 3hct_A TNF receptor-associated 98.4 5.1E-07 1.8E-11 65.1 6.6 85 37-144 14-98 (118)
25 2ysj_A Tripartite motif-contai 98.4 3.2E-07 1.1E-11 58.4 4.9 47 37-90 16-62 (63)
26 2ea6_A Ring finger protein 4; 98.4 1.8E-07 6.2E-12 60.6 3.7 53 37-98 11-67 (69)
27 3lrq_A E3 ubiquitin-protein li 98.4 3.6E-07 1.2E-11 63.9 5.3 55 41-105 22-76 (100)
28 3ztg_A E3 ubiquitin-protein li 98.4 1.8E-07 6.1E-12 64.4 3.6 50 38-97 10-60 (92)
29 2d8t_A Dactylidin, ring finger 98.4 1.1E-07 3.9E-12 62.1 2.3 58 36-105 10-67 (71)
30 1t1h_A Gspef-atpub14, armadill 98.4 2E-07 6.8E-12 62.0 3.6 67 39-116 6-73 (78)
31 1x4j_A Ring finger protein 38; 98.4 2.7E-07 9.3E-12 60.9 3.5 52 39-99 21-72 (75)
32 2csy_A Zinc finger protein 183 98.3 6.9E-07 2.4E-11 59.9 5.3 50 37-98 11-60 (81)
33 1iym_A EL5; ring-H2 finger, ub 98.3 2.6E-07 8.9E-12 57.1 2.5 50 40-98 4-54 (55)
34 2l0b_A E3 ubiquitin-protein li 98.3 4.6E-07 1.6E-11 62.3 3.9 52 39-99 38-89 (91)
35 2yur_A Retinoblastoma-binding 98.3 5.1E-07 1.7E-11 59.5 3.8 52 36-97 10-62 (74)
36 2yu4_A E3 SUMO-protein ligase 98.3 5.4E-07 1.8E-11 62.3 3.7 61 39-102 5-66 (94)
37 2ecj_A Tripartite motif-contai 98.2 9.9E-07 3.4E-11 54.9 4.2 45 39-90 13-57 (58)
38 2y43_A E3 ubiquitin-protein li 98.2 6.9E-07 2.4E-11 62.3 3.7 68 40-118 21-89 (99)
39 4ayc_A E3 ubiquitin-protein li 98.2 3.2E-07 1.1E-11 68.1 1.6 46 41-98 53-98 (138)
40 1v87_A Deltex protein 2; ring- 98.2 2.4E-06 8.3E-11 61.0 5.5 54 42-99 26-94 (114)
41 3fl2_A E3 ubiquitin-protein li 98.1 3.3E-06 1.1E-10 61.3 4.9 49 40-99 51-99 (124)
42 2kr4_A Ubiquitin conjugation f 98.1 3.8E-06 1.3E-10 56.8 4.7 68 37-116 10-78 (85)
43 1bor_A Transcription factor PM 98.1 7.9E-07 2.7E-11 55.2 1.1 46 39-99 4-49 (56)
44 3knv_A TNF receptor-associated 98.1 1.4E-07 4.9E-12 70.3 -3.0 86 38-143 28-119 (141)
45 1chc_A Equine herpes virus-1 r 98.0 3.9E-06 1.3E-10 54.0 3.8 47 41-98 5-51 (68)
46 2ckl_A Polycomb group ring fin 98.0 2.6E-06 8.9E-11 60.3 2.8 49 40-99 14-62 (108)
47 1z6u_A NP95-like ring finger p 98.0 5E-06 1.7E-10 62.5 4.5 50 40-100 77-126 (150)
48 2ecn_A Ring finger protein 141 97.9 4E-07 1.4E-11 59.2 -2.3 47 39-98 13-59 (70)
49 2ecl_A Ring-box protein 2; RNF 97.9 2.7E-06 9.3E-11 57.0 1.4 52 40-100 14-77 (81)
50 1jm7_B BARD1, BRCA1-associated 97.9 1.4E-06 4.9E-11 62.7 -0.3 48 41-101 22-69 (117)
51 3l11_A E3 ubiquitin-protein li 97.9 2.5E-06 8.7E-11 61.1 1.0 50 39-99 13-62 (115)
52 1wgm_A Ubiquitin conjugation f 97.9 6.1E-06 2.1E-10 57.3 2.6 53 37-101 18-71 (98)
53 3htk_C E3 SUMO-protein ligase 97.9 5.5E-06 1.9E-10 67.1 2.6 59 37-102 177-235 (267)
54 2kre_A Ubiquitin conjugation f 97.8 6.1E-06 2.1E-10 57.6 1.9 54 36-101 24-77 (100)
55 2f42_A STIP1 homology and U-bo 97.8 3E-05 1E-09 59.7 5.5 55 36-101 101-155 (179)
56 2ckl_B Ubiquitin ligase protei 97.8 1.8E-05 6E-10 60.4 3.9 50 40-99 53-102 (165)
57 2ct7_A Ring finger protein 31; 97.7 1.8E-05 6.2E-10 53.5 3.0 38 199-236 23-61 (86)
58 2c2l_A CHIP, carboxy terminus 97.7 5.6E-05 1.9E-09 62.3 6.1 56 35-101 202-257 (281)
59 2d8s_A Cellular modulator of i 97.7 5.1E-05 1.7E-09 50.5 4.4 54 39-100 13-71 (80)
60 4ap4_A E3 ubiquitin ligase RNF 97.6 3.1E-05 1E-09 56.5 2.9 59 38-105 69-131 (133)
61 2jmo_A Parkin; IBR, E3 ligase, 97.6 2.7E-05 9.3E-10 51.9 2.2 39 200-238 24-70 (80)
62 4ic3_A E3 ubiquitin-protein li 97.5 6.5E-06 2.2E-10 54.1 -1.2 42 42-99 25-67 (74)
63 2ea5_A Cell growth regulator w 97.4 0.00013 4.5E-09 46.9 3.3 46 38-99 12-58 (68)
64 2vje_A E3 ubiquitin-protein li 97.3 0.0001 3.5E-09 46.8 2.6 48 41-98 8-56 (64)
65 2ecg_A Baculoviral IAP repeat- 97.3 0.00013 4.4E-09 47.9 3.0 43 41-99 25-68 (75)
66 3dpl_R Ring-box protein 1; ubi 97.3 0.00017 5.8E-09 50.7 3.6 50 41-99 37-101 (106)
67 2vje_B MDM4 protein; proto-onc 97.2 0.00014 4.7E-09 46.0 2.4 47 42-98 8-55 (63)
68 2yho_A E3 ubiquitin-protein li 97.2 0.00019 6.6E-09 47.6 2.9 42 43-100 20-62 (79)
69 2y1n_A E3 ubiquitin-protein li 97.1 0.00039 1.3E-08 59.7 4.1 48 42-100 333-380 (389)
70 2ct0_A Non-SMC element 1 homol 96.7 0.0012 4E-08 43.0 3.4 52 39-99 13-64 (74)
71 4a0k_B E3 ubiquitin-protein li 96.7 0.0003 1E-08 50.2 0.5 49 42-99 49-112 (117)
72 2jun_A Midline-1; B-BOX, TRIM, 96.7 0.0012 4.2E-08 45.6 3.4 34 41-74 3-36 (101)
73 3k1l_B Fancl; UBC, ring, RWD, 96.5 0.0029 9.8E-08 53.2 5.2 63 37-101 304-375 (381)
74 3t6p_A Baculoviral IAP repeat- 95.9 0.0016 5.4E-08 55.4 0.6 42 41-98 295-337 (345)
75 1wd2_A Ariadne-1 protein homol 95.7 0.0084 2.9E-07 37.2 3.1 39 127-169 5-45 (60)
76 1vyx_A ORF K3, K3RING; zinc-bi 95.5 0.03 1E-06 34.6 5.2 49 40-98 5-58 (60)
77 3vk6_A E3 ubiquitin-protein li 95.2 0.015 5E-07 39.7 3.2 33 44-78 4-36 (101)
78 2bay_A PRE-mRNA splicing facto 94.8 0.025 8.4E-07 35.2 3.3 53 41-104 3-55 (61)
79 2cs3_A Protein C14ORF4, MY039 94.7 0.069 2.3E-06 34.6 5.1 52 37-90 11-63 (93)
80 3lrq_A E3 ubiquitin-protein li 94.6 0.0075 2.6E-07 41.6 0.4 43 202-250 23-66 (100)
81 2ysl_A Tripartite motif-contai 94.0 0.032 1.1E-06 35.6 2.6 44 202-250 21-65 (73)
82 1iym_A EL5; ring-H2 finger, ub 93.9 0.04 1.4E-06 33.0 2.7 45 202-250 6-51 (55)
83 2yur_A Retinoblastoma-binding 93.6 0.019 6.6E-07 37.0 0.9 44 202-250 16-60 (74)
84 2jrp_A Putative cytoplasmic pr 93.5 0.025 8.4E-07 37.1 1.3 33 202-236 3-41 (81)
85 2ct2_A Tripartite motif protei 93.5 0.034 1.1E-06 36.9 2.0 48 202-250 16-64 (88)
86 2ecm_A Ring finger and CHY zin 93.2 0.042 1.4E-06 32.8 2.0 45 202-250 6-51 (55)
87 2ysj_A Tripartite motif-contai 93.1 0.038 1.3E-06 34.2 1.7 42 202-248 21-63 (63)
88 4ayc_A E3 ubiquitin-protein li 93.0 0.046 1.6E-06 39.9 2.2 42 202-250 54-95 (138)
89 2djb_A Polycomb group ring fin 92.9 0.024 8.1E-07 36.3 0.5 42 202-250 16-58 (72)
90 2d8t_A Dactylidin, ring finger 92.6 0.054 1.8E-06 34.5 1.9 42 202-250 16-57 (71)
91 2y43_A E3 ubiquitin-protein li 92.5 0.043 1.5E-06 37.4 1.5 42 202-250 23-65 (99)
92 2ckl_A Polycomb group ring fin 92.5 0.049 1.7E-06 37.8 1.8 42 202-250 16-58 (108)
93 1e4u_A Transcriptional repress 92.4 0.05 1.7E-06 35.6 1.6 47 202-250 12-58 (78)
94 2kiz_A E3 ubiquitin-protein li 92.1 0.055 1.9E-06 34.1 1.5 44 202-250 15-59 (69)
95 3ztg_A E3 ubiquitin-protein li 91.9 0.027 9.1E-07 37.9 -0.2 44 202-250 14-58 (92)
96 2ckl_B Ubiquitin ligase protei 91.7 0.056 1.9E-06 40.6 1.4 43 202-250 55-98 (165)
97 2ecy_A TNF receptor-associated 91.7 0.056 1.9E-06 33.8 1.2 43 202-250 16-58 (66)
98 1chc_A Equine herpes virus-1 r 91.6 0.074 2.5E-06 33.3 1.6 42 202-250 6-48 (68)
99 2egp_A Tripartite motif-contai 91.4 0.067 2.3E-06 34.6 1.4 44 202-250 13-61 (79)
100 3ng2_A RNF4, snurf, ring finge 91.3 0.051 1.7E-06 34.4 0.7 48 201-250 10-59 (71)
101 2xeu_A Ring finger protein 4; 91.2 0.054 1.8E-06 33.4 0.7 47 202-250 4-52 (64)
102 2ea6_A Ring finger protein 4; 91.1 0.053 1.8E-06 34.0 0.6 47 202-250 16-64 (69)
103 3fl2_A E3 ubiquitin-protein li 91.1 0.064 2.2E-06 38.2 1.1 43 202-250 53-95 (124)
104 2ect_A Ring finger protein 126 91.1 0.21 7E-06 32.2 3.5 44 202-250 16-60 (78)
105 2ecw_A Tripartite motif-contai 90.9 0.062 2.1E-06 35.2 0.8 44 202-250 20-67 (85)
106 1x4j_A Ring finger protein 38; 90.9 0.053 1.8E-06 34.9 0.4 44 202-250 24-68 (75)
107 2ecj_A Tripartite motif-contai 90.8 0.11 3.9E-06 31.2 1.9 42 202-248 16-58 (58)
108 1t1h_A Gspef-atpub14, armadill 90.6 0.096 3.3E-06 33.8 1.5 43 202-250 9-51 (78)
109 1g25_A CDK-activating kinase a 90.3 0.065 2.2E-06 33.4 0.4 47 202-250 4-51 (65)
110 1jm7_B BARD1, BRCA1-associated 90.2 0.38 1.3E-05 33.7 4.5 40 202-250 23-63 (117)
111 2ep4_A Ring finger protein 24; 90.2 0.057 2E-06 34.6 0.1 45 202-250 16-60 (74)
112 2csy_A Zinc finger protein 183 90.1 0.065 2.2E-06 35.0 0.3 42 202-250 16-57 (81)
113 1pft_A TFIIB, PFTFIIBN; N-term 90.0 0.26 9E-06 29.0 3.0 28 201-228 5-34 (50)
114 1jm7_A BRCA1, breast cancer ty 89.7 0.22 7.7E-06 34.4 2.9 44 202-250 22-66 (112)
115 1z60_A TFIIH basal transcripti 89.7 0.073 2.5E-06 32.7 0.3 43 202-249 16-59 (59)
116 2l0b_A E3 ubiquitin-protein li 89.6 0.1 3.5E-06 35.0 1.1 44 202-250 41-85 (91)
117 3l11_A E3 ubiquitin-protein li 89.0 0.23 8E-06 34.7 2.6 43 202-250 16-58 (115)
118 2ecl_A Ring-box protein 2; RNF 88.6 0.24 8.2E-06 32.3 2.3 47 202-250 16-72 (81)
119 1vq8_Z 50S ribosomal protein L 88.2 0.15 5.3E-06 33.6 1.1 29 201-229 27-56 (83)
120 2ecv_A Tripartite motif-contai 88.1 0.17 5.7E-06 33.0 1.2 44 202-250 20-67 (85)
121 3hct_A TNF receptor-associated 87.9 0.087 3E-06 37.2 -0.3 43 202-250 19-61 (118)
122 2jr6_A UPF0434 protein NMA0874 87.8 0.32 1.1E-05 30.7 2.4 29 200-228 7-36 (68)
123 2k4x_A 30S ribosomal protein S 87.0 0.27 9.4E-06 29.7 1.6 28 201-228 18-46 (55)
124 1z60_A TFIIH basal transcripti 86.7 0.19 6.4E-06 30.9 0.8 36 130-172 17-52 (59)
125 3nw0_A Non-structural maintena 86.0 0.6 2.1E-05 37.3 3.6 52 40-100 179-230 (238)
126 3j20_Y 30S ribosomal protein S 85.9 0.35 1.2E-05 28.5 1.7 27 201-228 19-47 (50)
127 2ecn_A Ring finger protein 141 85.4 0.2 6.7E-06 31.5 0.4 40 202-249 16-55 (70)
128 1bor_A Transcription factor PM 84.8 0.5 1.7E-05 28.3 2.1 39 202-250 7-45 (56)
129 4ic3_A E3 ubiquitin-protein li 84.6 1.2 4.2E-05 28.3 4.0 37 202-250 25-63 (74)
130 1rmd_A RAG1; V(D)J recombinati 83.7 0.25 8.6E-06 34.5 0.4 43 202-250 24-66 (116)
131 3hcs_A TNF receptor-associated 82.0 0.24 8.3E-06 37.2 -0.3 43 202-250 19-61 (170)
132 2ct0_A Non-SMC element 1 homol 81.6 1.1 3.6E-05 28.9 2.7 46 200-250 14-60 (74)
133 3vk6_A E3 ubiquitin-protein li 81.5 0.46 1.6E-05 32.3 1.0 24 202-225 2-29 (101)
134 1z6u_A NP95-like ring finger p 80.4 0.46 1.6E-05 35.1 0.7 43 202-250 79-121 (150)
135 2jne_A Hypothetical protein YF 79.9 1 3.5E-05 30.3 2.2 33 202-236 33-71 (101)
136 3knv_A TNF receptor-associated 79.9 0.17 5.8E-06 37.0 -1.8 41 202-248 32-72 (141)
137 2js4_A UPF0434 protein BB2007; 79.8 1.2 4.2E-05 28.2 2.5 29 200-228 7-36 (70)
138 3dpl_R Ring-box protein 1; ubi 78.5 0.97 3.3E-05 31.2 1.9 34 215-250 64-97 (106)
139 2pk7_A Uncharacterized protein 78.4 1.3 4.5E-05 28.0 2.3 28 201-228 8-36 (69)
140 1v87_A Deltex protein 2; ring- 78.3 0.5 1.7E-05 32.8 0.3 28 223-250 60-90 (114)
141 4a0k_B E3 ubiquitin-protein li 77.1 0.49 1.7E-05 33.4 0.0 35 214-250 74-108 (117)
142 2hf1_A Tetraacyldisaccharide-1 76.4 1.3 4.5E-05 27.9 1.9 28 201-228 8-36 (68)
143 2jny_A Uncharacterized BCR; st 75.5 1.9 6.4E-05 27.1 2.4 29 200-228 9-38 (67)
144 2d8v_A Zinc finger FYVE domain 75.3 1.4 4.7E-05 27.4 1.7 34 39-76 6-40 (67)
145 1zbd_B Rabphilin-3A; G protein 72.8 1.8 6.1E-05 31.2 2.1 33 40-72 54-88 (134)
146 3na7_A HP0958; flagellar bioge 72.7 6.4 0.00022 31.5 5.6 19 102-120 169-187 (256)
147 1weo_A Cellulose synthase, cat 72.2 2.3 8E-05 28.1 2.3 41 149-217 34-74 (93)
148 2y1n_A E3 ubiquitin-protein li 71.6 3.1 0.00011 35.6 3.6 43 201-250 332-375 (389)
149 2yho_A E3 ubiquitin-protein li 70.0 6.1 0.00021 25.3 4.1 36 202-249 19-56 (79)
150 3h0g_I DNA-directed RNA polyme 69.7 2.6 8.9E-05 29.4 2.3 29 201-229 4-37 (113)
151 3qt1_I DNA-directed RNA polyme 69.1 2.6 8.9E-05 30.3 2.3 32 197-228 20-56 (133)
152 4ayb_P DNA-directed RNA polyme 68.1 3.8 0.00013 23.5 2.3 30 129-160 4-33 (48)
153 1wfh_A Zinc finger (AN1-like) 66.7 3.5 0.00012 25.5 2.1 27 201-231 15-41 (64)
154 1wfl_A Zinc finger protein 216 66.3 3.2 0.00011 26.5 1.9 26 202-231 26-51 (74)
155 3qt1_I DNA-directed RNA polyme 64.0 4.6 0.00016 29.0 2.7 34 125-160 21-56 (133)
156 2kdx_A HYPA, hydrogenase/ureas 63.3 14 0.00046 25.8 5.1 48 106-159 41-99 (119)
157 1wg2_A Zinc finger (AN1-like) 63.0 4.1 0.00014 25.2 1.9 27 201-231 15-41 (64)
158 1dl6_A Transcription factor II 61.7 5.2 0.00018 24.2 2.3 27 201-227 11-39 (58)
159 2kdx_A HYPA, hydrogenase/ureas 61.1 3.8 0.00013 28.7 1.8 23 227-249 74-97 (119)
160 2apo_B Ribosome biogenesis pro 60.0 3.1 0.00011 25.4 1.0 14 199-212 4-17 (60)
161 1twf_I B12.6, DNA-directed RNA 59.9 4.5 0.00016 28.5 2.0 29 201-229 4-37 (122)
162 1joc_A EEA1, early endosomal a 59.1 10 0.00036 26.7 3.9 35 40-74 68-103 (125)
163 2xzm_9 RPS31E; ribosome, trans 58.5 4.7 0.00016 30.8 2.0 29 201-230 113-143 (189)
164 1twf_L ABC10-alpha, DNA-direct 58.0 3.2 0.00011 26.2 0.9 24 202-226 29-53 (70)
165 3a43_A HYPD, hydrogenase nicke 57.9 2.8 9.6E-05 30.4 0.7 8 242-249 107-114 (139)
166 2fiy_A Protein FDHE homolog; F 57.1 5.9 0.0002 32.8 2.6 28 201-228 182-218 (309)
167 2kpi_A Uncharacterized protein 56.8 8.4 0.00029 23.1 2.6 27 200-228 9-38 (56)
168 3m7n_A Putative uncharacterize 56.3 5.4 0.00018 30.2 2.0 24 202-227 141-165 (179)
169 2zet_C Melanophilin; complex, 55.2 13 0.00044 27.3 3.9 31 41-71 68-100 (153)
170 1wfp_A Zinc finger (AN1-like) 54.8 6.8 0.00023 24.9 2.0 27 200-230 24-50 (74)
171 3h0g_I DNA-directed RNA polyme 52.9 6.2 0.00021 27.4 1.7 30 129-160 5-36 (113)
172 3lqh_A Histone-lysine N-methyl 52.7 4 0.00014 31.1 0.8 73 43-118 4-84 (183)
173 1wii_A Hypothetical UPF0222 pr 52.4 8.1 0.00028 25.4 2.1 29 200-228 22-57 (85)
174 3nw0_A Non-structural maintena 51.8 8.8 0.0003 30.4 2.7 47 199-250 178-225 (238)
175 1wff_A Riken cDNA 2810002D23 p 51.8 8.5 0.00029 25.2 2.1 28 201-231 25-52 (85)
176 3t6p_A Baculoviral IAP repeat- 51.3 19 0.00063 30.3 4.7 37 202-250 296-334 (345)
177 1gh9_A 8.3 kDa protein (gene M 51.0 5.2 0.00018 25.4 1.0 24 202-226 5-28 (71)
178 2yw8_A RUN and FYVE domain-con 49.3 10 0.00036 24.5 2.3 36 126-167 17-52 (82)
179 3mjh_B Early endosome antigen 49.2 6.3 0.00022 21.0 1.0 16 39-54 3-18 (34)
180 2k5c_A Uncharacterized protein 48.4 3.8 0.00013 26.5 0.0 23 85-109 8-31 (95)
181 3u5c_f 40S ribosomal protein S 48.3 8.9 0.0003 28.1 2.1 29 201-230 118-150 (152)
182 1x4v_A Hypothetical protein LO 47.4 10 0.00036 23.3 1.9 40 128-176 12-51 (63)
183 1k81_A EIF-2-beta, probable tr 46.8 9.4 0.00032 20.5 1.5 25 203-227 2-30 (36)
184 1twf_I B12.6, DNA-directed RNA 46.1 5.7 0.0002 28.0 0.7 31 128-160 4-36 (122)
185 2lbm_A Transcriptional regulat 45.8 74 0.0025 22.9 6.6 50 41-95 63-116 (142)
186 2c2l_A CHIP, carboxy terminus 45.1 4.1 0.00014 32.7 -0.3 44 201-250 208-251 (281)
187 2akl_A PHNA-like protein PA012 44.8 6.2 0.00021 28.0 0.7 27 129-160 28-54 (138)
188 3jyw_9 60S ribosomal protein L 44.2 11 0.00039 23.8 1.8 27 202-228 27-54 (72)
189 1joc_A EEA1, early endosomal a 44.1 21 0.00072 25.1 3.4 34 128-167 69-102 (125)
190 2hu9_A MERP, mercuric transpor 44.0 12 0.0004 26.7 2.1 46 86-143 2-50 (130)
191 1z2q_A LM5-1; membrane protein 44.0 14 0.00048 24.0 2.3 34 128-167 21-54 (84)
192 1x4u_A Zinc finger, FYVE domai 43.2 13 0.00045 24.1 2.1 33 128-166 14-46 (84)
193 2ko5_A Ring finger protein Z; 42.5 5.3 0.00018 26.7 0.0 48 39-100 26-74 (99)
194 2gmg_A Hypothetical protein PF 42.5 11 0.00038 25.7 1.6 23 220-249 68-91 (105)
195 2k16_A Transcription initiatio 41.1 23 0.00079 22.2 3.0 35 39-73 16-50 (75)
196 3htk_C E3 SUMO-protein ligase 39.2 13 0.00044 30.0 1.8 45 201-250 181-228 (267)
197 1fre_A Nuclear factor XNF7; zi 38.4 16 0.00056 19.8 1.7 26 148-173 12-38 (42)
198 2o35_A Hypothetical protein DU 38.0 18 0.00063 24.3 2.1 17 65-81 42-58 (105)
199 1lv3_A Hypothetical protein YA 37.9 8.9 0.0003 24.0 0.5 15 198-212 6-20 (68)
200 2ffw_A Midline-1; B-BOX, ring 37.6 23 0.00079 22.5 2.6 38 39-76 28-66 (78)
201 3j21_i 50S ribosomal protein L 37.2 13 0.00046 24.2 1.3 27 202-228 36-63 (83)
202 1f62_A Transcription factor WS 37.0 26 0.00087 20.1 2.5 31 43-73 2-32 (51)
203 1wfe_A Riken cDNA 2310008M20 p 36.9 25 0.00086 23.0 2.7 41 127-176 24-64 (86)
204 1vfy_A Phosphatidylinositol-3- 35.9 18 0.0006 22.8 1.8 31 130-166 13-43 (73)
205 2e72_A POGO transposable eleme 35.4 23 0.00077 20.4 1.9 11 240-250 10-20 (49)
206 1qxf_A GR2, 30S ribosomal prot 34.4 22 0.00074 22.0 1.9 32 128-162 7-38 (66)
207 2xzf_A Formamidopyrimidine-DNA 34.1 15 0.0005 29.7 1.4 13 202-214 243-255 (271)
208 3fyb_A Protein of unknown func 33.7 18 0.00061 24.3 1.5 17 65-81 41-57 (104)
209 1ee8_A MUTM (FPG) protein; bet 33.4 18 0.0006 29.2 1.8 13 202-214 236-248 (266)
210 1wep_A PHF8; structural genomi 33.2 33 0.0011 21.8 2.8 57 38-99 9-66 (79)
211 2yqq_A Zinc finger HIT domain- 33.0 17 0.00057 21.8 1.2 8 227-234 13-20 (56)
212 1wem_A Death associated transc 32.9 46 0.0016 20.9 3.4 32 41-73 16-47 (76)
213 3t7l_A Zinc finger FYVE domain 32.4 20 0.00067 23.6 1.6 32 130-167 22-53 (90)
214 1k82_A Formamidopyrimidine-DNA 31.9 17 0.00057 29.3 1.4 13 202-214 241-253 (268)
215 3ql9_A Transcriptional regulat 31.7 89 0.0031 22.1 5.0 46 42-90 58-107 (129)
216 1y02_A CARP2, FYVE-ring finger 31.6 17 0.00059 25.5 1.2 42 129-176 20-62 (120)
217 1nui_A DNA primase/helicase; z 31.4 23 0.0008 28.0 2.2 23 202-227 15-42 (255)
218 3u6p_A Formamidopyrimidine-DNA 31.3 17 0.00059 29.4 1.4 13 202-214 246-258 (273)
219 3h0g_L DNA-directed RNA polyme 31.2 20 0.00069 22.0 1.3 24 202-226 22-46 (63)
220 2vpb_A Hpygo1, pygopus homolog 31.2 35 0.0012 20.9 2.5 36 39-74 6-43 (65)
221 1k3x_A Endonuclease VIII; hydr 30.7 18 0.00062 29.0 1.4 13 202-214 235-247 (262)
222 2ri7_A Nucleosome-remodeling f 30.6 13 0.00044 27.7 0.5 76 39-119 6-82 (174)
223 3cc2_Z 50S ribosomal protein L 29.9 19 0.00065 25.0 1.2 28 201-228 60-88 (116)
224 2yvr_A Transcription intermedi 29.9 11 0.00039 21.4 0.1 26 148-173 16-41 (50)
225 1wys_A Riken cDNA 2310008M20 p 29.9 30 0.001 22.0 2.1 40 130-178 16-55 (75)
226 1wfk_A Zinc finger, FYVE domai 29.6 26 0.0009 22.9 1.9 33 129-167 10-42 (88)
227 3iz5_m 60S ribosomal protein L 29.5 18 0.00062 24.0 1.0 27 202-228 37-64 (92)
228 3j20_W 30S ribosomal protein S 29.1 29 0.00099 21.3 1.8 32 128-162 15-46 (63)
229 2aus_D NOP10, ribosome biogene 28.8 19 0.00066 21.8 0.9 14 200-213 4-17 (60)
230 4a17_Y RPL37A, 60S ribosomal p 27.9 20 0.0007 24.3 1.0 27 202-228 37-64 (103)
231 1we9_A PHD finger family prote 27.9 25 0.00086 21.2 1.4 35 39-73 4-39 (64)
232 3a1b_A DNA (cytosine-5)-methyl 27.7 41 0.0014 24.8 2.7 34 41-77 79-114 (159)
233 2i5o_A DNA polymerase ETA; zin 26.7 22 0.00075 19.5 0.9 15 199-213 7-21 (39)
234 3izc_m 60S ribosomal protein R 26.7 20 0.00068 23.8 0.8 27 202-228 37-64 (92)
235 3u5c_b RP61, YS20, 40S ribosom 26.5 43 0.0015 21.6 2.3 32 128-162 34-65 (82)
236 2dlq_A GLI-kruppel family memb 26.3 1.4E+02 0.0048 19.5 7.5 91 39-160 5-104 (124)
237 1zbd_B Rabphilin-3A; G protein 26.2 51 0.0017 23.5 3.0 37 199-236 53-90 (134)
238 1ffk_W Ribosomal protein L37AE 26.0 37 0.0013 21.5 2.0 30 199-228 25-55 (73)
239 1dvp_A HRS, hepatocyte growth 25.4 27 0.00092 27.1 1.5 32 130-167 163-194 (220)
240 1x6a_A LIMK-2, LIM domain kina 25.2 1.1E+02 0.0036 19.0 4.2 39 38-76 38-76 (81)
241 3iz6_X 40S ribosomal protein S 25.1 46 0.0016 21.7 2.3 33 128-163 36-68 (86)
242 1wew_A DNA-binding family prot 24.8 75 0.0026 20.0 3.4 35 37-72 12-48 (78)
243 3v2d_5 50S ribosomal protein L 24.4 47 0.0016 20.1 2.2 29 122-159 24-52 (60)
244 3cw2_K Translation initiation 24.4 28 0.00096 25.1 1.3 28 200-227 102-133 (139)
245 3j21_g 50S ribosomal protein L 24.3 20 0.00069 21.0 0.4 24 200-227 13-37 (51)
246 2f9y_B Acetyl-coenzyme A carbo 24.0 16 0.00055 30.1 -0.0 31 198-228 21-53 (304)
247 2k2d_A Ring finger and CHY zin 23.9 25 0.00084 22.6 0.8 21 229-249 40-62 (79)
248 2dkt_A Ring finger and CHY zin 23.7 31 0.0011 24.9 1.5 10 202-211 72-81 (143)
249 2xzm_6 RPS27E; ribosome, trans 23.6 39 0.0013 21.8 1.7 31 129-162 33-63 (81)
250 3vhs_A ATPase wrnip1; zinc fin 23.5 9.6 0.00033 18.7 -0.9 21 84-106 5-25 (29)
251 1wil_A KIAA1045 protein; ring 22.7 1E+02 0.0034 20.1 3.5 31 43-74 17-47 (89)
252 1wjv_A Cell growth regulating 22.6 44 0.0015 21.4 1.8 27 203-229 12-48 (79)
253 2a20_A Regulating synaptic mem 22.6 23 0.00079 21.4 0.5 36 201-237 9-44 (62)
254 2zjr_Z 50S ribosomal protein L 22.5 60 0.0021 19.6 2.4 28 123-159 25-52 (60)
255 2lri_C Autoimmune regulator; Z 22.5 86 0.0029 19.1 3.2 46 42-95 13-58 (66)
256 3po3_S Transcription elongatio 22.0 1.1E+02 0.0038 22.8 4.3 9 128-138 137-145 (178)
257 6rxn_A Rubredoxin; electron tr 21.9 53 0.0018 18.6 1.9 30 128-159 4-39 (46)
258 3zyq_A Hepatocyte growth facto 21.5 37 0.0013 26.5 1.6 32 130-167 166-197 (226)
259 4esj_A Type-2 restriction enzy 20.8 43 0.0015 26.4 1.8 35 128-164 34-70 (257)
260 2ku3_A Bromodomain-containing 20.7 95 0.0033 19.2 3.1 34 39-72 14-49 (71)
261 2cur_A Skeletal muscle LIM-pro 20.7 75 0.0026 19.0 2.7 36 39-76 29-64 (69)
262 3o70_A PHD finger protein 13; 20.2 41 0.0014 20.8 1.3 36 36-72 14-49 (68)
No 1
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.78 E-value=6.1e-20 Score=116.26 Aligned_cols=50 Identities=32% Similarity=0.834 Sum_probs=44.6
Q ss_pred CCCccCCCCCcceeccCCCcceEE-e--ccccccccccccccCCCCCcCCCCCCC
Q 025608 199 QKWNRCPNCKFYVEKKDGCSYIRC-R--CGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 199 ~~~~~CP~C~~~i~k~~GCnhm~C-~--C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
.++|+||+|+++|||++|||||+| + |+++|||+|+++|+ .|+.+++.|||
T Consensus 4 ~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~--~~~~~~y~C~~ 56 (60)
T 1wd2_A 4 ANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWE--PHGSAWYNCNR 56 (60)
T ss_dssp CCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSG--GGGTSSSSSCS
T ss_pred ccceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcc--cCCCccccCCC
Confidence 457999999999999999999999 6 99999999999997 45556888886
No 2
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.72 E-value=1.2e-17 Score=116.86 Aligned_cols=87 Identities=24% Similarity=0.500 Sum_probs=77.9
Q ss_pred CCceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCc-ccccCCCCCCCCC--CCHHHHhccCChHHHHHHH
Q 025608 39 SRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENV-TSIGCPVTDCGGS--LEPEYCRDILPEEAFDKWG 115 (250)
Q Consensus 39 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~-~~i~CP~~~C~~~--l~~~~i~~~l~~~~~~~~~ 115 (250)
.+.++|+||+++++.++++.+.+|+|.||.+||+.|+...+.++. .++.||..+|... ++.+.++.+|+++.+++|+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky~ 82 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRYK 82 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHSCHHHHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHCCHHHHHHHH
Confidence 456789999999988887777789999999999999999998764 6899999999999 9999999999999999999
Q ss_pred HHHHhhccCC
Q 025608 116 KALCESLIPG 125 (250)
Q Consensus 116 ~~~~~~~~~~ 125 (250)
+++.+.++.+
T Consensus 83 ~~~~~~~v~~ 92 (94)
T 1wim_A 83 KLQFERSGPS 92 (94)
T ss_dssp HHHHHSSCSS
T ss_pred HHHHHhhhcc
Confidence 9988877654
No 3
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=99.27 E-value=8.5e-14 Score=95.20 Aligned_cols=73 Identities=32% Similarity=0.705 Sum_probs=60.7
Q ss_pred ChHHHHHHHHHHHhhccCCCC-eecCCCCCCCCceecCccCccCcccCCcccchhccccCccc---CCCCCchhHhhhcc
Q 025608 107 PEEAFDKWGKALCESLIPGAQ-KFYCPFKDCSALLIDDAGEAIRESECPNCHRLFCAQCKVAW---HAGIECADFQKLHK 182 (250)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~-~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~---H~~~~C~~~~~~~~ 182 (250)
+++++++|.+++.+.++...+ .+||| +|+++++.+.+ ...+.|+.|+..||+.|+.+| |.|++|+++++|.+
T Consensus 3 s~~~~e~y~~~l~e~~v~~~~~~~wCP--~C~~~~~~~~~--~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~w~~ 78 (86)
T 2ct7_A 3 SGSSGALFHKKLTEGVLMRDPKFLWCA--QCSFGFIYERE--QLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWKR 78 (86)
T ss_dssp CCCCCCSSSSCCCCSCCCSCCCEECCS--SSCCCEECCCS--CSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEeECc--CCCchheecCC--CCceEeCCCCCccccccCCchhhcCCCCChHHHHHHHH
Confidence 345677888888888887655 45999 99998887653 466899999999999999999 99999999998764
Q ss_pred C
Q 025608 183 D 183 (250)
Q Consensus 183 ~ 183 (250)
+
T Consensus 79 ~ 79 (86)
T 2ct7_A 79 M 79 (86)
T ss_dssp H
T ss_pred h
Confidence 3
No 4
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=99.25 E-value=1.8e-13 Score=92.12 Aligned_cols=69 Identities=28% Similarity=0.601 Sum_probs=60.9
Q ss_pred cCChHHHHHHHHHHHhhccCCCCeecCCCCCCCCceecCccCccCcccCC-----cccchhccccCcccCCCCCchh
Q 025608 105 ILPEEAFDKWGKALCESLIPGAQKFYCPFKDCSALLIDDAGEAIRESECP-----NCHRLFCAQCKVAWHAGIECAD 176 (250)
Q Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~C~-----~C~~~~C~~C~~~~H~~~~C~~ 176 (250)
+|+++++++|++++.+.++...+.+|||.|+|++++..++ ....+.|+ .|+..||..|+.+||. .+|+.
T Consensus 2 ~l~~~~~~rY~~~~~e~~v~~~~~~~CP~p~C~~~v~~~~--~~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~ 75 (80)
T 2jmo_A 2 HMGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEP--DQRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSA 75 (80)
T ss_dssp CCCCCCCCSCCCSSSCCSSCCCSSCCCCSSSCCCCCCCCS--CTTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSS
T ss_pred CCCHHHHHHHHHHHHHHHhhhCCcEECCCCCCCcccEECC--CCCcCCCCCCCCCCCCCeeccccCccccC-Ccccc
Confidence 5788889999999999999877778999999999988765 34668998 9999999999999999 99986
No 5
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.01 E-value=1.8e-11 Score=90.49 Aligned_cols=118 Identities=23% Similarity=0.521 Sum_probs=80.0
Q ss_pred CCceecccCcccccCC----CceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHHHHhccCChHHHHHH
Q 025608 39 SRSFVCEICVETKLRN----ESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPEYCRDILPEEAFDKW 114 (250)
Q Consensus 39 ~~~~~C~iC~~~~~~~----~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~~l~~~~~~~~ 114 (250)
...++|+||++.+..+ .....++|||.||.+|+.+|+... ..||. |+..+....+..+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-------~~CP~--Cr~~~~~~~l~~l~-------- 67 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-------NTCPT--CRKKINHKRYHPIY-------- 67 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC-------SBCTT--TCCBCTTTCEEECB--------
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC-------CCCCC--CCCcCccccccccc--------
Confidence 3457899999988543 333456999999999999998732 38998 99888876655431
Q ss_pred HHHHHhhccCCCCeecCCCCCCCCceecCccCccCcccCCcccchhccccCcccCCCCCchhHhhhccCCCchHHHHHHH
Q 025608 115 GKALCESLIPGAQKFYCPFKDCSALLIDDAGEAIRESECPNCHRLFCAQCKVAWHAGIECADFQKLHKDEPESEDIILMK 194 (250)
Q Consensus 115 ~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~~ 194 (250)
...+...|+ -|...+...... ........||..||..|...|...
T Consensus 68 ---------i~~~~~~C~--iC~~~~~~~~~~-~~~~~~~~CgH~fc~~Ci~~~~~~----------------------- 112 (133)
T 4ap4_A 68 ---------IGSGTVSCP--ICMDGYSEIVQN-GRLIVSTECGHVFCSQCLRDSLKN----------------------- 112 (133)
T ss_dssp ---------CSSSSCBCT--TTCCBHHHHHHT-TCCEEEETTSBEEEHHHHHHHHHH-----------------------
T ss_pred ---------cCCCCCCCC--CCCCcccccccc-CcceEeCCCCChhhHHHHHHHHHc-----------------------
Confidence 234456788 676655432111 112234478999999998654311
Q ss_pred HHhcCCCccCCCCCcceecc
Q 025608 195 LAQNQKWNRCPNCKFYVEKK 214 (250)
Q Consensus 195 ~~~~~~~~~CP~C~~~i~k~ 214 (250)
.+.||.|+..+.++
T Consensus 113 ------~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 113 ------ANTCPTCRKKINHK 126 (133)
T ss_dssp ------CSBCTTTCCBCCGG
T ss_pred ------CCCCCCCCCcCChh
Confidence 16999999988765
No 6
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.85 E-value=2.3e-09 Score=82.77 Aligned_cols=101 Identities=22% Similarity=0.471 Sum_probs=65.4
Q ss_pred CCCCceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHHHHhccCChHHHHHHHH
Q 025608 37 ETSRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPEYCRDILPEEAFDKWGK 116 (250)
Q Consensus 37 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~~l~~~~~~~~~~ 116 (250)
.-...+.|+||++.+..+ . ..+|||.||.+|+..++... ...||. |+..+..+.+. ....++ +
T Consensus 14 ~~~~~~~C~IC~~~~~~p--v-~~~CgH~fC~~Ci~~~~~~~------~~~CP~--Cr~~~~~~~~~---~~~~~~---~ 76 (170)
T 3hcs_A 14 PLESKYECPICLMALREA--V-QTPCGHRFCKACIIKSIRDA------GHKCPV--DNEILLENQLF---PDNFAK---R 76 (170)
T ss_dssp CCCGGGBCTTTCSBCSSE--E-ECTTSCEEEHHHHHHHHHHH------CSBCTT--TCCBCCGGGCE---ECHHHH---H
T ss_pred CCCCCCCCCCCChhhcCc--E-ECCCCCHHHHHHHHHHHHhC------CCCCCC--CccCcchhhhh---hhHHHH---H
Confidence 345567899999988654 2 25999999999999999854 138997 88888776432 111111 1
Q ss_pred HHHhhccCCCCeecCCCCCCCCceecCccC------ccCcccCCcccchh
Q 025608 117 ALCESLIPGAQKFYCPFKDCSALLIDDAGE------AIRESECPNCHRLF 160 (250)
Q Consensus 117 ~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~------~~~~~~C~~C~~~~ 160 (250)
.+ ..-.++||+.+|+..+....-. ....+.|+.|+..+
T Consensus 77 ~i------~~l~v~C~n~GC~~~~~~~~l~~H~~~C~~~~v~C~~C~~~~ 120 (170)
T 3hcs_A 77 EI------LSLMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCPQCQRPF 120 (170)
T ss_dssp HH------HTSEEECCSTTCCCEEEGGGHHHHHTTCTTSEEECTTTCCEE
T ss_pred HH------hhcccCCCCCCCCceecHhHHHHHHhcCCceeeECCCCChHH
Confidence 11 1245799988999887765321 12345565555443
No 7
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=9.4e-09 Score=70.22 Aligned_cols=64 Identities=20% Similarity=0.504 Sum_probs=48.1
Q ss_pred cCCCCceecccCcccccCCCc-eecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHHHHhcc
Q 025608 36 SETSRSFVCEICVETKLRNES-FSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPEYCRDI 105 (250)
Q Consensus 36 ~~~~~~~~C~iC~~~~~~~~~-~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~~ 105 (250)
....+.++|+||++.+...+. +..++|+|.||.+|+..|+... ...+.||. |+..+....+..+
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~----~~~~~CP~--Cr~~~~~~~i~~l 74 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS----INGVRCPF--CSKITRITSLTQL 74 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC----SSCBCCTT--TCCCBCCSSTTTS
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC----CCCcCCCC--CCCcccchhHHHH
Confidence 344556789999999876432 4456999999999999999854 24679998 8888777665544
No 8
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=4.6e-08 Score=66.16 Aligned_cols=62 Identities=24% Similarity=0.547 Sum_probs=46.9
Q ss_pred ccCCCCceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHHHH
Q 025608 35 RSETSRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPEYC 102 (250)
Q Consensus 35 ~~~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i 102 (250)
.....+.++|+||++.+..+. .++|+|.||.+|+..|+......+ ....||. |+..+..+.+
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~-~~~~CP~--Cr~~~~~~~~ 74 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQPL---SLDCGHSFCQACLTANHKKSMLDK-GESSCPV--CRISYQPENI 74 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSSCB---CCSSSCCBCTTHHHHHHHHHHHTT-SCCCCTT--TCCSSCSSSC
T ss_pred HHHccCCCCCCCCCcccCCce---eCCCCCHHHHHHHHHHHHHhhcCC-CCCcCCC--CCCccCHHhc
Confidence 344455678999999886543 349999999999999999765443 3679998 8888776544
No 9
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.57 E-value=9.9e-09 Score=68.65 Aligned_cols=60 Identities=25% Similarity=0.458 Sum_probs=45.7
Q ss_pred CCceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHHHHh
Q 025608 39 SRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPEYCR 103 (250)
Q Consensus 39 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~ 103 (250)
.+.++|+||++.+..+. .++|+|.||.+|+..|+............||. |+..+..+.+.
T Consensus 10 ~~~~~C~IC~~~~~~p~---~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~--Cr~~~~~~~l~ 69 (79)
T 2egp_A 10 QEEVTCPICLELLTEPL---SLDCGHSLCRACITVSNKEAVTSMGGKSSCPV--CGISYSFEHLQ 69 (79)
T ss_dssp CCCCEETTTTEECSSCC---CCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSS--SCCCCCSSGGG
T ss_pred ccCCCCcCCCcccCCee---ECCCCCHHHHHHHHHHHHhcccCCCCCCcCCC--CCCcCCHhhCC
Confidence 45678999999886543 24999999999999998864433345789998 88888765543
No 10
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=7.1e-08 Score=62.13 Aligned_cols=54 Identities=20% Similarity=0.536 Sum_probs=41.6
Q ss_pred CCCCceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHHH
Q 025608 37 ETSRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPEY 101 (250)
Q Consensus 37 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~ 101 (250)
.....+.|+||++.+..+.. ++|+|.||..|+..|+. .....||. |+..+..++
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~~~~------~~~~~CP~--Cr~~~~~~~ 64 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQ---TECGHRFCESCMAALLS------SSSPKCTA--CQESIVKDK 64 (66)
T ss_dssp SCCCCEECTTTCCEESSCCC---CSSSCCCCHHHHHHHHT------TSSCCCTT--TCCCCCTTT
T ss_pred cCCcCCCCCCCChHhcCeeE---CCCCCHHHHHHHHHHHH------hCcCCCCC--CCcCCChhh
Confidence 33556889999998865432 49999999999999986 13467998 888877654
No 11
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.55 E-value=1.2e-07 Score=67.62 Aligned_cols=69 Identities=22% Similarity=0.553 Sum_probs=49.1
Q ss_pred eecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHHHHhcc-CChHHHHHHHHHHH
Q 025608 42 FVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPEYCRDI-LPEEAFDKWGKALC 119 (250)
Q Consensus 42 ~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~~-l~~~~~~~~~~~~~ 119 (250)
+.|+||++.+..+. .++|+|.||..|+..|+... ...+.||. |+..+....+... .-...++.+.+.+.
T Consensus 22 ~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~----~~~~~CP~--Cr~~~~~~~~~~~~~l~~~~~~~~~~~~ 91 (112)
T 1jm7_A 22 LECPICLELIKEPV---STKCDHIFCKFCMLKLLNQK----KGPSQCPL--CKNDITKRSLQESTRFSQLVEELLKIIC 91 (112)
T ss_dssp TSCSSSCCCCSSCC---BCTTSCCCCSHHHHHHHHSS----SSSCCCTT--TSCCCCTTTCBCCCSSSHHHHHHHHHHH
T ss_pred CCCcccChhhcCeE---ECCCCCHHHHHHHHHHHHhC----CCCCCCcC--CCCcCCHhhcCccHHHHHHHHHHHHHHH
Confidence 47999999886543 24999999999999998843 23578998 9988887766432 23445555554443
No 12
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.55 E-value=5e-08 Score=70.28 Aligned_cols=82 Identities=21% Similarity=0.469 Sum_probs=57.0
Q ss_pred CceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHHHHhccCChHHHHHHHHHHH
Q 025608 40 RSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPEYCRDILPEEAFDKWGKALC 119 (250)
Q Consensus 40 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~~l~~~~~~~~~~~~~ 119 (250)
+.+.|+||++.+..+. .++|||.||..|+..|+... ...||. |+..+....+... .. .+.+.+
T Consensus 22 ~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~------~~~CP~--Cr~~~~~~~~~~~-~~----~l~~~i- 84 (116)
T 1rmd_A 22 KSISCQICEHILADPV---ETSCKHLFCRICILRCLKVM------GSYCPS--CRYPCFPTDLESP-VK----SFLNIL- 84 (116)
T ss_dssp HHTBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHT------CSBCTT--TCCBCCGGGCBCC-CH----HHHHHH-
T ss_pred CCCCCCCCCcHhcCcE---EcCCCCcccHHHHHHHHhHC------cCcCCC--CCCCCCHhhcccc-HH----HHHHHH-
Confidence 4568999999876432 25999999999999999852 347997 9999888765433 11 122222
Q ss_pred hhccCCCCeecCCCCCCCCceecC
Q 025608 120 ESLIPGAQKFYCPFKDCSALLIDD 143 (250)
Q Consensus 120 ~~~~~~~~~~~Cp~~~C~~~~~~~ 143 (250)
..-.++||+.+|+..+...
T Consensus 85 -----~~l~v~C~~~gC~~~~~~~ 103 (116)
T 1rmd_A 85 -----NSLMVKCPAQDCNEEVSLE 103 (116)
T ss_dssp -----HHCEEECCSTTCCCEEEHH
T ss_pred -----HHhcCCCCCCCCcchhhHh
Confidence 1234589988898776654
No 13
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.55 E-value=5.5e-08 Score=65.77 Aligned_cols=62 Identities=21% Similarity=0.402 Sum_probs=46.3
Q ss_pred ccCCCCceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHHHH
Q 025608 35 RSETSRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPEYC 102 (250)
Q Consensus 35 ~~~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i 102 (250)
...-.+.+.|+||++.+..+. .++|+|.||..|+..|+..... ......||. |+..+..+.+
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~-~~~~~~CP~--Cr~~~~~~~~ 74 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKEPV---SADCNHSFCRACITLNYESNRN-TDGKGNCPV--CRVPYPFGNL 74 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSSCE---ECTTSCCBCHHHHHHHHHHSBC-TTSCBCCTT--TCCCCCTTCC
T ss_pred HHhCccCCCCcCCChhhCcce---eCCCCCHHHHHHHHHHHHhccC-CCCCCCCCC--CCCcCCHHhC
Confidence 333455678999999886543 3589999999999999986542 234679997 8888876644
No 14
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=7e-08 Score=63.31 Aligned_cols=58 Identities=24% Similarity=0.477 Sum_probs=44.0
Q ss_pred CCCCceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHHHHhcc
Q 025608 37 ETSRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPEYCRDI 105 (250)
Q Consensus 37 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~~ 105 (250)
.....+.|+||++.+..+ ..+.+|+|.||..|+..|+.. ...||. |+..+...++...
T Consensus 11 ~~~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~-------~~~CP~--Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDA--TTITECLHTFCKSCIVRHFYY-------SNRCPK--CNIVVHQTQPLSG 68 (72)
T ss_dssp CCCGGGSCTTTSSCCSSC--EECSSSCCEECHHHHHHHHHH-------CSSCTT--TCCCCCSSCSCCC
T ss_pred hcCCCCCCCCCChHHHCc--CEECCCCCHHHHHHHHHHHHc-------CCcCCC--cCcccCccccccc
Confidence 334567899999987653 334599999999999999974 358997 9888877655443
No 15
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.52 E-value=1.5e-07 Score=61.09 Aligned_cols=54 Identities=22% Similarity=0.536 Sum_probs=40.8
Q ss_pred CCCCceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCH
Q 025608 37 ETSRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEP 99 (250)
Q Consensus 37 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 99 (250)
......+|+||++.+........++|+|.||..|+..|+... ..||. |...+..
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-------~~CP~--Cr~~~~~ 63 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-------KKCPI--CRVDIEA 63 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-------SBCTT--TCSBSCS
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-------CCCcC--cCccccC
Confidence 334556799999988655445566999999999999999742 25998 8766543
No 16
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.51 E-value=3.2e-08 Score=64.69 Aligned_cols=57 Identities=19% Similarity=0.541 Sum_probs=43.5
Q ss_pred CCceecccCcccccCC----CceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHHHHhc
Q 025608 39 SRSFVCEICVETKLRN----ESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPEYCRD 104 (250)
Q Consensus 39 ~~~~~C~iC~~~~~~~----~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~ 104 (250)
....+|+||++.+..+ .....++|+|.||.+|+..|+... ..||. |...+....+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-------~~CP~--Cr~~~~~~~~~~ 68 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-------NTCPT--CRKKINHKRYHP 68 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-------SBCTT--TCCBCCCCSCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-------CCCCC--CCCccChhheee
Confidence 4556899999987542 334567999999999999999743 48998 888887665543
No 17
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.50 E-value=3.1e-08 Score=63.25 Aligned_cols=56 Identities=20% Similarity=0.559 Sum_probs=42.9
Q ss_pred ceecccCcccccCC----CceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHHHHhcc
Q 025608 41 SFVCEICVETKLRN----ESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPEYCRDI 105 (250)
Q Consensus 41 ~~~C~iC~~~~~~~----~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~~ 105 (250)
.++|+||++.+..+ +.+..++|+|.||.+|+..|+.. ...||. |+..+..+++..+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-------~~~CP~--Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-------ANTCPT--CRKKINHKRYHPI 62 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-------CSBCTT--TCCBCTTTCEEEC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-------CCCCCC--CCccCCccceeee
Confidence 46799999987532 33345699999999999999984 248997 9988887665543
No 18
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.50 E-value=1e-07 Score=58.93 Aligned_cols=50 Identities=24% Similarity=0.539 Sum_probs=38.7
Q ss_pred CceecccCcccccC-CCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCC
Q 025608 40 RSFVCEICVETKLR-NESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLE 98 (250)
Q Consensus 40 ~~~~C~iC~~~~~~-~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 98 (250)
...+|+||++.+.. ......++|+|.||.+|+..|+... ..||. |...++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-------~~CP~--Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-------YRCPL--CSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-------CCCTT--SCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-------CcCCC--CCCcCC
Confidence 34579999999853 3345567999999999999999854 67997 776653
No 19
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=3.7e-08 Score=64.75 Aligned_cols=56 Identities=20% Similarity=0.626 Sum_probs=42.1
Q ss_pred CCCCceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHHH
Q 025608 37 ETSRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPEY 101 (250)
Q Consensus 37 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~ 101 (250)
.....+.|+||++.+..+ . .++|+|.||.+|+..|+. .......||. |+..+..++
T Consensus 16 ~~~~~~~C~IC~~~~~~~--~-~~~CgH~fC~~Ci~~~~~----~~~~~~~CP~--Cr~~~~~~~ 71 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKP--V-TIDCGHNFCLKCITQIGE----TSCGFFKCPL--CKTSVRKNA 71 (73)
T ss_dssp CCCCCCBCTTTCSBCSSE--E-ECTTCCEEEHHHHHHHCS----SSCSCCCCSS--SCCCCCCCC
T ss_pred hCccCCEeccCCcccCCe--E-EcCCCChhhHHHHHHHHH----cCCCCCCCCC--CCCcCCccc
Confidence 345567899999987643 2 349999999999999986 2234678998 888776654
No 20
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.47 E-value=4.7e-08 Score=62.78 Aligned_cols=57 Identities=21% Similarity=0.413 Sum_probs=42.4
Q ss_pred ceecccCcc-cccCCCc-eecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHHHHhcc
Q 025608 41 SFVCEICVE-TKLRNES-FSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPEYCRDI 105 (250)
Q Consensus 41 ~~~C~iC~~-~~~~~~~-~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~~ 105 (250)
.+.|+||++ .+..+.. +..++|||.||.+|+.+++.. ....||. |+..+..+.++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~------~~~~CP~--Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR------GAGNCPE--CGTPLRKSNFRVQ 61 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT------TSSSCTT--TCCCCSSCCCEEE
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc------CCCcCCC--CCCccccccceee
Confidence 457999999 5654432 234699999999999999863 2468997 9988887766544
No 21
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.47 E-value=4.7e-08 Score=65.15 Aligned_cols=57 Identities=26% Similarity=0.592 Sum_probs=44.1
Q ss_pred CCCceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHHHHh
Q 025608 38 TSRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPEYCR 103 (250)
Q Consensus 38 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~ 103 (250)
.....+|+||++.+........++|+|.||..|+..|+... ..||. |...+....+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-------~~CP~--Cr~~~~~~~~~ 68 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-------DSCPV--CRKSLTGQNTA 68 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT-------CSCTT--TCCCCCCSCSC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC-------CcCcC--cCCccCCcccC
Confidence 34556899999998766555566999999999999998632 47998 88877765443
No 22
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=1.6e-07 Score=61.86 Aligned_cols=52 Identities=21% Similarity=0.608 Sum_probs=40.6
Q ss_pred CCCceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCC
Q 025608 38 TSRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLE 98 (250)
Q Consensus 38 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 98 (250)
.....+|+||++.+........++|+|.||..|+..|+... ..||. |...+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-------~~CP~--Cr~~~~ 63 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-------KVCPL--CNMPVL 63 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-------SBCTT--TCCBCS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-------CcCCC--cCcccc
Confidence 34456799999998766655556999999999999999742 27998 876654
No 23
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.44 E-value=9.1e-08 Score=63.75 Aligned_cols=56 Identities=18% Similarity=0.371 Sum_probs=40.3
Q ss_pred CCceecccCcccccCCCc-eecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHHHH
Q 025608 39 SRSFVCEICVETKLRNES-FSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPEYC 102 (250)
Q Consensus 39 ~~~~~C~iC~~~~~~~~~-~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i 102 (250)
.+.++|+||++.+..++. +...+|||.||..|+.+++.. ....||. |...+....+
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~------~~~~CP~--CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD------ENGLCPA--CRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS------SCSBCTT--TCCBCSSCSS
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc------CCCCCCC--CCCccCCCch
Confidence 455789999998864332 222259999999999988752 3468998 8887776543
No 24
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.42 E-value=5.1e-07 Score=65.12 Aligned_cols=85 Identities=19% Similarity=0.403 Sum_probs=58.3
Q ss_pred CCCCceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHHHHhccCChHHHHHHHH
Q 025608 37 ETSRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPEYCRDILPEEAFDKWGK 116 (250)
Q Consensus 37 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~~l~~~~~~~~~~ 116 (250)
.-...+.|+||++.+..+ . .++|+|.||.+|+..|+... ...||. |+..+....+. ....+++
T Consensus 14 ~~~~~~~C~IC~~~~~~p--~-~~~CgH~fC~~Ci~~~~~~~------~~~CP~--Cr~~~~~~~~~---~~~~l~~--- 76 (118)
T 3hct_A 14 PLESKYECPICLMALREA--V-QTPCGHRFCKACIIKSIRDA------GHKCPV--DNEILLENQLF---PDNFAKR--- 76 (118)
T ss_dssp CCCGGGBCTTTCSBCSSE--E-ECTTSCEEEHHHHHHHHHHH------CSBCTT--TCCBCCGGGCE---ECHHHHH---
T ss_pred CCCCCCCCCcCChhhcCe--E-ECCcCChhhHHHHHHHHhhC------CCCCCC--CCCCcCHHhcc---cCHHHHH---
Confidence 335567899999987654 2 34899999999999999854 128998 88888775432 2221111
Q ss_pred HHHhhccCCCCeecCCCCCCCCceecCc
Q 025608 117 ALCESLIPGAQKFYCPFKDCSALLIDDA 144 (250)
Q Consensus 117 ~~~~~~~~~~~~~~Cp~~~C~~~~~~~~ 144 (250)
.+ ..-.++||+.+|...+....
T Consensus 77 ~i------~~l~v~C~n~gC~~~~~~~~ 98 (118)
T 3hct_A 77 EI------LSLMVKCPNEGCLHKMELRH 98 (118)
T ss_dssp HH------HTSEEECSSTTCCCEEEGGG
T ss_pred HH------ccceeECCCCCCCCEEeeHH
Confidence 11 13457999889998877653
No 25
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=3.2e-07 Score=58.39 Aligned_cols=47 Identities=19% Similarity=0.659 Sum_probs=35.6
Q ss_pred CCCCceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCC
Q 025608 37 ETSRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPV 90 (250)
Q Consensus 37 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~ 90 (250)
.....+.|+||++.+..+. .++|+|.||..|+.+|+.. ......||.
T Consensus 16 ~~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~----~~~~~~CP~ 62 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPV---TIDCGHNFCLKCITQIGET----SCGFFKCPL 62 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCE---ECTTSSEECHHHHHHHHHH----CSSCCCCSC
T ss_pred hCccCCCCCcCCchhCCeE---EeCCCCcchHHHHHHHHHc----CCCCCcCcC
Confidence 3355678999999887542 3499999999999999984 223567886
No 26
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=1.8e-07 Score=60.55 Aligned_cols=53 Identities=21% Similarity=0.609 Sum_probs=40.0
Q ss_pred CCCCceecccCcccccCC----CceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCC
Q 025608 37 ETSRSFVCEICVETKLRN----ESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLE 98 (250)
Q Consensus 37 ~~~~~~~C~iC~~~~~~~----~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 98 (250)
.....++|+||++.+... ..+..++|+|.||.+|+..|+.. ...||. |+..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-------~~~CP~--Cr~~~~ 67 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-------ANTCPT--CRKKIN 67 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-------CSSCTT--TCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-------CCCCCC--CCCccC
Confidence 335567899999987532 33356799999999999999974 247997 877664
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.40 E-value=3.6e-07 Score=63.91 Aligned_cols=55 Identities=24% Similarity=0.559 Sum_probs=43.3
Q ss_pred ceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHHHHhcc
Q 025608 41 SFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPEYCRDI 105 (250)
Q Consensus 41 ~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~~ 105 (250)
.+.|+||++.+..+ ...++|+|.||..|+..|+... ...||. |...+..+.+...
T Consensus 22 ~~~C~IC~~~~~~p--~~~~~CgH~FC~~Ci~~~~~~~------~~~CP~--Cr~~~~~~~l~~~ 76 (100)
T 3lrq_A 22 VFRCFICMEKLRDA--RLCPHCSKLCCFSCIRRWLTEQ------RAQCPH--CRAPLQLRELVNC 76 (100)
T ss_dssp HTBCTTTCSBCSSE--EECTTTCCEEEHHHHHHHHHHT------CSBCTT--TCCBCCGGGCEEC
T ss_pred CCCCccCCccccCc--cccCCCCChhhHHHHHHHHHHC------cCCCCC--CCCcCCHHHhHhh
Confidence 45799999988643 3336999999999999999854 168998 9999988776544
No 28
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.40 E-value=1.8e-07 Score=64.38 Aligned_cols=50 Identities=20% Similarity=0.534 Sum_probs=38.7
Q ss_pred CCCceecccCcccccCCCceecCC-CCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCC
Q 025608 38 TSRSFVCEICVETKLRNESFSIKG-CSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSL 97 (250)
Q Consensus 38 ~~~~~~C~iC~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l 97 (250)
-...+.|+||++.+..+. .++ |||.||..|+..|+... ....||. |...+
T Consensus 10 ~~~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~-----~~~~CP~--Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDAV---VIPCCGNSYCDECIRTALLES-----DEHTCPT--CHQND 60 (92)
T ss_dssp CCTTTEETTTTEECSSCE---ECTTTCCEECHHHHHHHHHHC-----TTCCCTT--TCCSS
T ss_pred CCcCCCCCCCChhhcCce---ECCCCCCHHHHHHHHHHHHhc-----CCCcCcC--CCCcC
Confidence 345678999999887543 347 99999999999999732 2368998 88776
No 29
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=1.1e-07 Score=62.12 Aligned_cols=58 Identities=17% Similarity=0.410 Sum_probs=44.3
Q ss_pred cCCCCceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHHHHhcc
Q 025608 36 SETSRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPEYCRDI 105 (250)
Q Consensus 36 ~~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~~ 105 (250)
......++|+||++.+... . .++|+|.||..|+..|+... ..||. |...+..+.+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~--~-~~~CgH~fC~~Ci~~~~~~~-------~~CP~--Cr~~~~~~~~~~p 67 (71)
T 2d8t_A 10 APSLTVPECAICLQTCVHP--V-SLPCKHVFCYLCVKGASWLG-------KRCAL--CRQEIPEDFLDSG 67 (71)
T ss_dssp CSSSSCCBCSSSSSBCSSE--E-EETTTEEEEHHHHHHCTTCS-------SBCSS--SCCBCCHHHHSCS
T ss_pred ccCCCCCCCccCCcccCCC--E-EccCCCHHHHHHHHHHHHCC-------CcCcC--cCchhCHhhccCC
Confidence 3345567899999987543 2 34899999999999988632 58998 9999988877643
No 30
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.39 E-value=2e-07 Score=62.04 Aligned_cols=67 Identities=18% Similarity=0.281 Sum_probs=47.8
Q ss_pred CCceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHHHHh-ccCChHHHHHHHH
Q 025608 39 SRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPEYCR-DILPEEAFDKWGK 116 (250)
Q Consensus 39 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~-~~l~~~~~~~~~~ 116 (250)
...+.|+||++.+..+. .++|||.||..|+..|+.. ....||. |+..+....+. +..-...++.|.+
T Consensus 6 ~~~~~C~IC~~~~~~Pv---~~~CgH~fc~~Ci~~~~~~------~~~~CP~--C~~~~~~~~l~~n~~l~~~i~~~~~ 73 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPV---IVSTGQTYERSSIQKWLDA------GHKTCPK--SQETLLHAGLTPNYVLKSLIALWCE 73 (78)
T ss_dssp SSSSSCTTTSCCCSSEE---EETTTEEEEHHHHHHHHTT------TCCBCTT--TCCBCSSCCCEECTTTHHHHHHHHH
T ss_pred cccCCCCCccccccCCE---EcCCCCeecHHHHHHHHHH------CcCCCCC--CcCCCChhhCccCHHHHHHHHHHHH
Confidence 45678999999886542 2489999999999999962 2467998 88888765443 3334555666553
No 31
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.35 E-value=2.7e-07 Score=60.94 Aligned_cols=52 Identities=21% Similarity=0.614 Sum_probs=40.8
Q ss_pred CCceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCH
Q 025608 39 SRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEP 99 (250)
Q Consensus 39 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 99 (250)
.+..+|+||++.+...+....++|+|.||.+|+..|+... ..||. |...+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-------~~CP~--Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-------RTCPI--CRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-------SSCTT--TCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-------CcCcC--cCCcCCC
Confidence 4556899999998766655666999999999999998742 37998 8766643
No 32
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=6.9e-07 Score=59.87 Aligned_cols=50 Identities=22% Similarity=0.601 Sum_probs=39.3
Q ss_pred CCCCceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCC
Q 025608 37 ETSRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLE 98 (250)
Q Consensus 37 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 98 (250)
.....+.|+||++.+..+ ..++|+|.||..|+..|+.. ...||. |+..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~-------~~~CP~--Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRA-------TPRCYI--CDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHH-------CSBCSS--SCCBCC
T ss_pred cCCCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHC-------CCcCCC--cCcccc
Confidence 334567899999988653 24699999999999999973 357998 888776
No 33
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.31 E-value=2.6e-07 Score=57.05 Aligned_cols=50 Identities=20% Similarity=0.545 Sum_probs=37.1
Q ss_pred CceecccCcccccCCCceecCC-CCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCC
Q 025608 40 RSFVCEICVETKLRNESFSIKG-CSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLE 98 (250)
Q Consensus 40 ~~~~C~iC~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 98 (250)
+..+|+||++.+...+....++ |+|.||.+|+..|+.. ...||. |...+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-------~~~CP~--Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-------HSTCPL--CRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-------CCSCSS--SCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-------CCcCcC--CCCEeE
Confidence 3457999999987654444444 9999999999999853 247998 776553
No 34
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.30 E-value=4.6e-07 Score=62.25 Aligned_cols=52 Identities=21% Similarity=0.607 Sum_probs=40.4
Q ss_pred CCceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCH
Q 025608 39 SRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEP 99 (250)
Q Consensus 39 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 99 (250)
....+|+||++.+........++|+|.||..|+..|+... -.||. |...+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~-------~~CP~--Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS-------GTCPV--CRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT-------CBCTT--TCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC-------CcCcC--cCccCCC
Confidence 4556799999998766555556899999999999998632 37998 8776643
No 35
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.29 E-value=5.1e-07 Score=59.47 Aligned_cols=52 Identities=19% Similarity=0.487 Sum_probs=39.2
Q ss_pred cCCCCceecccCcccccCCCceecCC-CCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCC
Q 025608 36 SETSRSFVCEICVETKLRNESFSIKG-CSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSL 97 (250)
Q Consensus 36 ~~~~~~~~C~iC~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l 97 (250)
......+.|+||++.+..+. . ++ |+|.||..|+..|+... ....||. |+..+
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~--~-~~~CgH~fC~~Ci~~~~~~~-----~~~~CP~--Cr~~~ 62 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDAV--V-IPCCGNSYCDECIRTALLES-----DEHTCPT--CHQND 62 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTCE--E-CSSSCCEECTTHHHHHHHHS-----SSSCCSS--SCCSS
T ss_pred ccCCCCCCCcCCChHHhCCe--E-cCCCCCHHHHHHHHHHHHhc-----CCCcCCC--CCCcC
Confidence 33455678999999887543 2 46 99999999999999843 2468998 87653
No 36
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.27 E-value=5.4e-07 Score=62.29 Aligned_cols=61 Identities=25% Similarity=0.450 Sum_probs=45.6
Q ss_pred CCceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCC-CCHHHH
Q 025608 39 SRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGS-LEPEYC 102 (250)
Q Consensus 39 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~-l~~~~i 102 (250)
...+.|+||++.+..+. .+..|||.||+.|+..|+...-. +.....||..+|... +....+
T Consensus 5 ~~~~~CPI~~~~~~dPV--~~~~cGh~f~r~cI~~~l~~~~~-~~~~~~CP~tgc~~~~l~~~~L 66 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPV--KNKVCGHTYEEDAIVRMIESRQK-RKKKAYCPQIGCSHTDIRKSDL 66 (94)
T ss_dssp SSCCBCTTTCSBCSSEE--EESSSCCEEEHHHHHHHHHHHHT-TTCCBCCCSTTCCCCCBCGGGE
T ss_pred CcEeECcCcCchhcCCE--EcCCCCCeecHHHHHHHHHHccC-cCCCCCCCcCcCcccccCHhhC
Confidence 45678999999887543 23259999999999999986421 224678999999977 776554
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=9.9e-07 Score=54.94 Aligned_cols=45 Identities=24% Similarity=0.639 Sum_probs=34.1
Q ss_pred CCceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCC
Q 025608 39 SRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPV 90 (250)
Q Consensus 39 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~ 90 (250)
...+.|+||++.+..+. .++|+|.||.+|+..|+... .....||.
T Consensus 13 ~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~----~~~~~CP~ 57 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPV---IIECGHNFCKACITRWWEDL----ERDFPCPV 57 (58)
T ss_dssp CCCCBCSSSCCBCSSCC---CCSSCCCCCHHHHHHHTTSS----CCSCCCSC
T ss_pred ccCCCCccCCcccCccE---eCCCCCccCHHHHHHHHHhc----CCCCCCCC
Confidence 45568999999887543 35899999999999997631 23567885
No 38
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.24 E-value=6.9e-07 Score=62.30 Aligned_cols=68 Identities=25% Similarity=0.468 Sum_probs=47.3
Q ss_pred CceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHHHHh-ccCChHHHHHHHHHH
Q 025608 40 RSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPEYCR-DILPEEAFDKWGKAL 118 (250)
Q Consensus 40 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~-~~l~~~~~~~~~~~~ 118 (250)
+.+.|+||++.+..+ ..+.+|||.||..|+..|+.. ...||. |+..+....+. +.+-.+.++.|.+..
T Consensus 21 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~-------~~~CP~--Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 21 DLLRCGICFEYFNIA--MIIPQCSHNYCSLCIRKFLSY-------KTQCPT--CCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHTBCTTTCSBCSSE--EECTTTCCEEEHHHHHHHHTT-------CCBCTT--TCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred CCCCcccCChhhCCc--CEECCCCCHhhHHHHHHHHHC-------CCCCCC--CCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 346799999988653 233489999999999999873 258997 99888875543 222334555555443
No 39
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.21 E-value=3.2e-07 Score=68.12 Aligned_cols=46 Identities=26% Similarity=0.777 Sum_probs=35.6
Q ss_pred ceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCC
Q 025608 41 SFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLE 98 (250)
Q Consensus 41 ~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 98 (250)
.+.|+||++.+..+ ..++|||.||.+|+..|+.. ...||. |...+.
T Consensus 53 ~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~-------~~~CP~--Cr~~~~ 98 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKR-------KIECPI--CRKDIK 98 (138)
T ss_dssp HSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTT-------CSBCTT--TCCBCC
T ss_pred cCCCcccCcccCCc---eECCCCCCccHHHHHHHHHc-------CCcCCC--CCCcCC
Confidence 35799999988643 23599999999999999762 246998 887664
No 40
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.17 E-value=2.4e-06 Score=61.04 Aligned_cols=54 Identities=22% Similarity=0.386 Sum_probs=39.6
Q ss_pred eecccCcccccCCC---------------ceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCH
Q 025608 42 FVCEICVETKLRNE---------------SFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEP 99 (250)
Q Consensus 42 ~~C~iC~~~~~~~~---------------~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 99 (250)
.+|+||++.+.... +..+++|+|.||..||..|+.... ......||. |...+..
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~--~~~~~~CP~--CR~~~~~ 94 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN--KDGSLQCPS--CKTIYGE 94 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC--CSSCCBCTT--TCCBSSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHccc--CCCCCcCCC--CCCccCC
Confidence 47999999985432 233679999999999999996332 134568998 8876653
No 41
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.09 E-value=3.3e-06 Score=61.31 Aligned_cols=49 Identities=29% Similarity=0.625 Sum_probs=38.5
Q ss_pred CceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCH
Q 025608 40 RSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEP 99 (250)
Q Consensus 40 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 99 (250)
..+.|+||++.+..+. .++|||.||..|+..|+.. ....||. |+..+..
T Consensus 51 ~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~------~~~~CP~--Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPI---TTVCQHNVCKDCLDRSFRA------QVFSCPA--CRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEE---ECTTSCEEEHHHHHHHHHT------TCCBCTT--TCCBCCT
T ss_pred cCCCCCcCChHHcCcE---EeeCCCcccHHHHHHHHhH------CcCCCCC--CCccCCC
Confidence 3467999999887432 3499999999999999981 3458998 8887765
No 42
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.08 E-value=3.8e-06 Score=56.80 Aligned_cols=68 Identities=9% Similarity=-0.018 Sum_probs=47.4
Q ss_pred CCCCceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHHHHh-ccCChHHHHHHH
Q 025608 37 ETSRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPEYCR-DILPEEAFDKWG 115 (250)
Q Consensus 37 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~-~~l~~~~~~~~~ 115 (250)
.....+.|+||++.+..+. .++|||.||+.|+..|+.. ...||. |+..+..+.+. +..-...++.|.
T Consensus 10 ~~p~~~~CpI~~~~m~dPV---~~~cGhtf~r~~I~~~l~~-------~~~cP~--~~~~l~~~~l~pn~~L~~~i~~~~ 77 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPV---RLPSGTVMDRSIILRHLLN-------SPTDPF--NRQMLTESMLEPVPELKEQIQAWM 77 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHH-------CSBCTT--TCCBCCGGGCEECHHHHHHHHHHH
T ss_pred cCchheECcccCchhcCCe---ECCCCCEECHHHHHHHHhc-------CCCCCC--CcCCCChHhcchHHHHHHHHHHHH
Confidence 3456788999999887543 3489999999999999983 247998 88888876432 111234445554
Q ss_pred H
Q 025608 116 K 116 (250)
Q Consensus 116 ~ 116 (250)
.
T Consensus 78 ~ 78 (85)
T 2kr4_A 78 R 78 (85)
T ss_dssp H
T ss_pred H
Confidence 3
No 43
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.07 E-value=7.9e-07 Score=55.20 Aligned_cols=46 Identities=20% Similarity=0.562 Sum_probs=35.4
Q ss_pred CCceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCH
Q 025608 39 SRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEP 99 (250)
Q Consensus 39 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 99 (250)
.+.+.|+||++.+..+ ..++|+|.||..|+.. ..+.||. |+..+..
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~----------~~~~CP~--Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEA----------SGMQCPI--CQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSS----------SSSSCSS--CCSSSSC
T ss_pred ccCCCceEeCCccCCe---EEcCCCCcccHHHHcc----------CCCCCCc--CCcEeec
Confidence 4556799999988754 3458999999999876 3578998 7766553
No 44
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.07 E-value=1.4e-07 Score=70.26 Aligned_cols=86 Identities=21% Similarity=0.407 Sum_probs=54.1
Q ss_pred CCCceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHHHHh------ccCChHHH
Q 025608 38 TSRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPEYCR------DILPEEAF 111 (250)
Q Consensus 38 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~------~~l~~~~~ 111 (250)
-...+.|+||++.+..+ + .++|||.||..|+..|+.. ....||. |...+..+... .++....+
T Consensus 28 l~~~~~C~IC~~~~~~p--v-~~~CgH~FC~~Ci~~~~~~------~~~~CP~--Cr~~~~~~~~~~~l~~~~~~~d~~~ 96 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP--F-QAQCGHRYCSFCLASILSS------GPQNCAA--CVHEGIYEEGISILESSSAFPDNAA 96 (141)
T ss_dssp CCGGGBCTTTCSBCSSE--E-ECTTSCEEEHHHHHHHGGG------SCEECHH--HHHTTCCCTTTTEECGGGCEECHHH
T ss_pred CCcCcCCCCCChhhcCc--E-ECCCCCccCHHHHHHHHhc------CCCCCCC--CCCcccccccccccchhhhcccHHH
Confidence 35567899999988654 2 2599999999999999852 2357997 76554333221 12222222
Q ss_pred HHHHHHHHhhccCCCCeecCCCCCCCCceecC
Q 025608 112 DKWGKALCESLIPGAQKFYCPFKDCSALLIDD 143 (250)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~ 143 (250)
+ +.+ ..-.++||+.+|...+...
T Consensus 97 ~---~~i------~~L~v~Cpn~GC~~~~~l~ 119 (141)
T 3knv_A 97 R---REV------ESLPAVCPSDGCTWKGTLK 119 (141)
T ss_dssp H---HHH------HTSEEECCSTTCCCEEEHH
T ss_pred H---HHH------cccccccCCCCCCCEeEHH
Confidence 1 111 1345699988888776654
No 45
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.03 E-value=3.9e-06 Score=54.03 Aligned_cols=47 Identities=26% Similarity=0.663 Sum_probs=36.5
Q ss_pred ceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCC
Q 025608 41 SFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLE 98 (250)
Q Consensus 41 ~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 98 (250)
..+|+||++.+..+ ...++|+|.||.+|+..|+... ..||. |+..+.
T Consensus 5 ~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~-------~~CP~--Cr~~~~ 51 (68)
T 1chc_A 5 AERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQN-------PTCPL--CKVPVE 51 (68)
T ss_dssp CCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHS-------CSTTT--TCCCCC
T ss_pred CCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCc-------CcCcC--CChhhH
Confidence 35799999987643 2356999999999999998632 37998 887665
No 46
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.01 E-value=2.6e-06 Score=60.33 Aligned_cols=49 Identities=27% Similarity=0.733 Sum_probs=38.1
Q ss_pred CceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCH
Q 025608 40 RSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEP 99 (250)
Q Consensus 40 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 99 (250)
..+.|+||++.+..+ ..+.+|||.||..|+..|+.. ...||. |+..+..
T Consensus 14 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~-------~~~CP~--Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA--TTIIECLHSFCKTCIVRYLET-------SKYCPI--CDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHTS-------CSBCTT--TCCBSCS
T ss_pred CcCCCccCChHHhCc--CEeCCCCChhhHHHHHHHHHh-------CCcCcC--CCccccc
Confidence 346799999988643 334599999999999999873 268998 8877664
No 47
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.00 E-value=5e-06 Score=62.49 Aligned_cols=50 Identities=28% Similarity=0.660 Sum_probs=39.7
Q ss_pred CceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHH
Q 025608 40 RSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPE 100 (250)
Q Consensus 40 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~ 100 (250)
..+.|+||++.+..+. .++|+|.||..|+..|+.. ....||. |...+...
T Consensus 77 ~~~~C~IC~~~~~~pv---~~~CgH~fC~~Ci~~~~~~------~~~~CP~--Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPV---TTECFHNVCKDCLQRSFKA------QVFSCPA--CRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEE---ECTTSCEEEHHHHHHHHHT------TCCBCTT--TCCBCCTT
T ss_pred cCCEeecCChhhcCCE---EcCCCCchhHHHHHHHHHh------CCCcCCC--CCccCCCC
Confidence 3468999999876533 2599999999999999983 2468998 88887765
No 48
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=4e-07 Score=59.22 Aligned_cols=47 Identities=28% Similarity=0.729 Sum_probs=35.8
Q ss_pred CCceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCC
Q 025608 39 SRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLE 98 (250)
Q Consensus 39 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 98 (250)
.....|+||++.+.. ..++|+|.||..|+..|+. ....||. |...+.
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~-------~~~~CP~--Cr~~~~ 59 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSD-------RHRNCPI--CRLQMT 59 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSC-------CCSSCHH--HHHCTT
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHH-------CcCcCCC--cCCccc
Confidence 445689999998765 3459999999999999876 2457886 665554
No 49
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.91 E-value=2.7e-06 Score=56.97 Aligned_cols=52 Identities=19% Similarity=0.450 Sum_probs=37.7
Q ss_pred CceecccCcccccC------------CCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHH
Q 025608 40 RSFVCEICVETKLR------------NESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPE 100 (250)
Q Consensus 40 ~~~~C~iC~~~~~~------------~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~ 100 (250)
+..+|+||++++.. +....+.+|+|.|+.+|+..|+... -.||. |...+...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-------~~CP~--CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN-------NRCPL--CQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC-------CBCTT--TCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC-------CCCCC--cCCCcchh
Confidence 34458888888743 2234455799999999999998743 27998 88777654
No 50
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.89 E-value=1.4e-06 Score=62.66 Aligned_cols=48 Identities=25% Similarity=0.684 Sum_probs=37.1
Q ss_pred ceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHHH
Q 025608 41 SFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPEY 101 (250)
Q Consensus 41 ~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~ 101 (250)
.+.|+||++.+..+. .+.+|||.||..|+..|+. ..||. |+..+....
T Consensus 22 ~~~C~IC~~~~~~pv--~~~~CgH~fC~~Ci~~~~~---------~~CP~--Cr~~~~~~~ 69 (117)
T 1jm7_B 22 LLRCSRCTNILREPV--CLGGCEHIFCSNCVSDCIG---------TGCPV--CYTPAWIQD 69 (117)
T ss_dssp TTSCSSSCSCCSSCB--CCCSSSCCBCTTTGGGGTT---------TBCSS--SCCBCSCSS
T ss_pred CCCCCCCChHhhCcc--EeCCCCCHHHHHHHHHHhc---------CCCcC--CCCcCcccc
Confidence 467999999886543 2238999999999999875 67998 888776543
No 51
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.89 E-value=2.5e-06 Score=61.07 Aligned_cols=50 Identities=26% Similarity=0.620 Sum_probs=38.9
Q ss_pred CCceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCH
Q 025608 39 SRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEP 99 (250)
Q Consensus 39 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 99 (250)
...+.|+||++.+..+. .++|+|.||..|+..|+.. ....||. |...+..
T Consensus 13 ~~~~~C~iC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~------~~~~CP~--Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEPV---TLPCNHTLCKPCFQSTVEK------ASLCCPF--CRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSCE---ECTTSCEECHHHHCCCCCT------TTSBCTT--TCCBCHH
T ss_pred CCCCCCccCCcccCcee---EcCCCCHHhHHHHHHHHhH------CcCCCCC--CCcccCc
Confidence 44578999999886532 3499999999999988752 2368997 9988875
No 52
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.87 E-value=6.1e-06 Score=57.34 Aligned_cols=53 Identities=11% Similarity=-0.008 Sum_probs=41.4
Q ss_pred CCCCceecccCcccccCCCceecCCCC-CcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHHH
Q 025608 37 ETSRSFVCEICVETKLRNESFSIKGCS-HMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPEY 101 (250)
Q Consensus 37 ~~~~~~~C~iC~~~~~~~~~~~~~~C~-H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~ 101 (250)
...+.+.|+||++.+..+. .++|+ |.||+.|+..|+.. ...||. |+..+..+.
T Consensus 18 ~~p~~~~CpI~~~~m~dPV---~~~cG~htf~r~cI~~~l~~-------~~~cP~--~~~~l~~~~ 71 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPV---VLPSSRVTVDRSTIARHLLS-------DQTDPF--NRSPLTMDQ 71 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEE---ECTTTCCEEEHHHHHHHTTT-------SCBCTT--TCSBCCTTT
T ss_pred cCcHhcCCcCccccccCCe---ECCCCCeEECHHHHHHHHHh-------CCCCCC--CCCCCChhh
Confidence 3456788999999887643 34899 99999999999973 237998 888887654
No 53
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.86 E-value=5.5e-06 Score=67.12 Aligned_cols=59 Identities=17% Similarity=0.332 Sum_probs=46.3
Q ss_pred CCCCceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHHHH
Q 025608 37 ETSRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPEYC 102 (250)
Q Consensus 37 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i 102 (250)
.....+.|+||++.+..+. ....|||.||+.|+..|+... ....||..+|...+....+
T Consensus 177 ~~~~el~CPIcl~~f~DPV--ts~~CGHsFcR~cI~~~~~~~-----~~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPL--ISRKCNHVFDRDGIQNYLQGY-----TTRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEE--EESSSCCEEEHHHHHHHSTTC-----SCEECSGGGCSCEECGGGE
T ss_pred CCceeeECcCccCcccCCe--eeCCCCCcccHHHHHHHHHhC-----CCCCCCcccccCcCchhhC
Confidence 3456678999999886543 345999999999999998731 3478999999998887654
No 54
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.82 E-value=6.1e-06 Score=57.56 Aligned_cols=54 Identities=9% Similarity=-0.021 Sum_probs=41.6
Q ss_pred cCCCCceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHHH
Q 025608 36 SETSRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPEY 101 (250)
Q Consensus 36 ~~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~ 101 (250)
......+.|+||++.+..+.+ ++|||.||+.|+..|+.. ...||. |+..+....
T Consensus 24 ~~~p~~~~CpI~~~~m~dPV~---~~cGhtf~r~~I~~~l~~-------~~~cP~--~~~~l~~~~ 77 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDPVR---LPSGTIMDRSIILRHLLN-------SPTDPF--NRQTLTESM 77 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSEEE---ETTTEEEEHHHHHHHTTS-------CSBCSS--SCCBCCTTS
T ss_pred ccCcHhhCCcCccCcccCCeE---CCCCCEEchHHHHHHHHc-------CCCCCC--CCCCCChhh
Confidence 344567889999998876543 379999999999999973 247998 888887643
No 55
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.78 E-value=3e-05 Score=59.67 Aligned_cols=55 Identities=15% Similarity=0.027 Sum_probs=42.6
Q ss_pred cCCCCceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHHH
Q 025608 36 SETSRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPEY 101 (250)
Q Consensus 36 ~~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~ 101 (250)
......+.|+||++.+..+. .++|||+||+.|+..|+... +. .||. |+..+....
T Consensus 101 ~~ip~~f~CPI~~elm~DPV---~~~~Ghtfer~~I~~~l~~~---~~---tcP~--t~~~l~~~~ 155 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPC---ITPSGITYDRKDIEEHLQRV---GH---FDPV--TRSPLTQDQ 155 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHT---CS---BCTT--TCCBCCGGG
T ss_pred cCCcHhhcccCccccCCCCe---ECCCCCEECHHHHHHHHHhC---CC---CCCC--CcCCCChhh
Confidence 44467788999999887543 34899999999999999842 21 6998 888887754
No 56
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.76 E-value=1.8e-05 Score=60.41 Aligned_cols=50 Identities=28% Similarity=0.761 Sum_probs=38.7
Q ss_pred CceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCH
Q 025608 40 RSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEP 99 (250)
Q Consensus 40 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 99 (250)
..+.|+||++.+..+ ..+.+|+|.||..|+..|+.. ....||. |+..+..
T Consensus 53 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~------~~~~CP~--Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNT--MTTKECLHRFCADCIITALRS------GNKECPT--CRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHHT------TCCBCTT--TCCBCCS
T ss_pred CCCCCcccChHhhCc--CEeCCCCChhHHHHHHHHHHh------CcCCCCC--CCCcCCC
Confidence 345899999988753 334599999999999999983 1467998 8887753
No 57
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=97.72 E-value=1.8e-05 Score=53.51 Aligned_cols=38 Identities=26% Similarity=0.611 Sum_probs=34.0
Q ss_pred CCCccCCCCCcceeccCCCcceEE-eccccccccccccc
Q 025608 199 QKWNRCPNCKFYVEKKDGCSYIRC-RCGHAFCYHCGVQL 236 (250)
Q Consensus 199 ~~~~~CP~C~~~i~k~~GCnhm~C-~C~~~FC~~C~~~~ 236 (250)
.+++-||+|+..+...++-..++| .|++.||+.|+.+|
T Consensus 23 ~~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 23 PKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CCEeECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 345679999999888888888999 89999999999999
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.68 E-value=5.6e-05 Score=62.30 Aligned_cols=56 Identities=14% Similarity=0.049 Sum_probs=42.7
Q ss_pred ccCCCCceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHHH
Q 025608 35 RSETSRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPEY 101 (250)
Q Consensus 35 ~~~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~ 101 (250)
.......+.|+||++.+..+. ..+|||+||+.|+..|+... + ..||. |+..++...
T Consensus 202 ~~~~~~~~~c~i~~~~~~dPv---~~~~gh~f~~~~i~~~~~~~---~---~~cP~--~~~~~~~~~ 257 (281)
T 2c2l_A 202 KRDIPDYLCGKISFELMREPC---ITPSGITYDRKDIEEHLQRV---G---HFNPV--TRSPLTQEQ 257 (281)
T ss_dssp CCCCCSTTBCTTTCSBCSSEE---ECSSCCEEETTHHHHHHHHT---C---SSCTT--TCCCCCGGG
T ss_pred CCCCCcccCCcCcCCHhcCCe---ECCCCCEECHHHHHHHHHHC---C---CCCcC--CCCCCchhc
Confidence 345566788999999887653 34899999999999999742 1 23998 888887654
No 59
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.65 E-value=5.1e-05 Score=50.50 Aligned_cols=54 Identities=22% Similarity=0.468 Sum_probs=40.7
Q ss_pred CCceecccCcccccCCCceecCCCC-----CcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHH
Q 025608 39 SRSFVCEICVETKLRNESFSIKGCS-----HMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPE 100 (250)
Q Consensus 39 ~~~~~C~iC~~~~~~~~~~~~~~C~-----H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~ 100 (250)
.....|.||++++...+.. .++|. |.|+.+||..|+... ....||. |+..+..+
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~-----~~~~Cpl--Cr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSS-----DTRCCEL--CKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHH-----CCSBCSS--SCCBCCCC
T ss_pred CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhC-----CCCCCCC--CCCeeecC
Confidence 3445799999988655444 35896 999999999999854 2468998 88776543
No 60
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.59 E-value=3.1e-05 Score=56.51 Aligned_cols=59 Identities=20% Similarity=0.539 Sum_probs=44.5
Q ss_pred CCCceecccCcccccCC----CceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHHHHhcc
Q 025608 38 TSRSFVCEICVETKLRN----ESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPEYCRDI 105 (250)
Q Consensus 38 ~~~~~~C~iC~~~~~~~----~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~~ 105 (250)
+.....|+||++.+... ......+|+|.||..|+..|+... -.||. |...+..+.+..+
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-------~~CP~--Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-------NTCPT--CRKKINHKRYHPI 131 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC-------SBCTT--TCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC-------CCCCC--CCCcCChhcceee
Confidence 45567799999987532 222456999999999999999742 38998 9999988776543
No 61
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=97.58 E-value=2.7e-05 Score=51.86 Aligned_cols=39 Identities=26% Similarity=0.575 Sum_probs=35.5
Q ss_pred CCccCCC--CCcceeccCCCcceEE------eccccccccccccccC
Q 025608 200 KWNRCPN--CKFYVEKKDGCSYIRC------RCGHAFCYHCGVQLST 238 (250)
Q Consensus 200 ~~~~CP~--C~~~i~k~~GCnhm~C------~C~~~FC~~C~~~~~~ 238 (250)
..+-||. |+..|...++...++| .|++.||+.|+.+|+.
T Consensus 24 ~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 24 GGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp SSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred CcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 4789998 9999998889999999 6999999999999964
No 62
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.55 E-value=6.5e-06 Score=54.09 Aligned_cols=42 Identities=24% Similarity=0.683 Sum_probs=32.3
Q ss_pred eecccCcccccCCCceecCCCCCc-chHHHHHHHHHHHhhcCcccccCCCCCCCCCCCH
Q 025608 42 FVCEICVETKLRNESFSIKGCSHM-YCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEP 99 (250)
Q Consensus 42 ~~C~iC~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 99 (250)
..|+||++.+... .+++|+|. ||.+|+..+ ..||. |...+..
T Consensus 25 ~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~-----------~~CP~--Cr~~i~~ 67 (74)
T 4ic3_A 25 KLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV-----------DKCPM--CYTVITF 67 (74)
T ss_dssp TBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC-----------SBCTT--TCCBCSE
T ss_pred CCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC-----------ccCCC--cCcCccC
Confidence 4799999876532 23599999 999998866 58998 8776653
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.37 E-value=0.00013 Score=46.88 Aligned_cols=46 Identities=22% Similarity=0.585 Sum_probs=33.7
Q ss_pred CCCceecccCcccccCCCceecCCCCCc-chHHHHHHHHHHHhhcCcccccCCCCCCCCCCCH
Q 025608 38 TSRSFVCEICVETKLRNESFSIKGCSHM-YCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEP 99 (250)
Q Consensus 38 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 99 (250)
......|.||++.... ..+++|+|. ||.+|+.. .-.||. |...+..
T Consensus 12 ~~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~-----------~~~CP~--CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY-----------FQQCPM--CRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH-----------CSSCTT--TCCCCCC
T ss_pred CCCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc-----------CCCCCC--CCcchhc
Confidence 3445679999986543 345699999 99999983 147998 8776654
No 64
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.34 E-value=0.0001 Score=46.81 Aligned_cols=48 Identities=23% Similarity=0.509 Sum_probs=34.6
Q ss_pred ceecccCcccccCCCceecCCCCCc-chHHHHHHHHHHHhhcCcccccCCCCCCCCCCC
Q 025608 41 SFVCEICVETKLRNESFSIKGCSHM-YCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLE 98 (250)
Q Consensus 41 ~~~C~iC~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 98 (250)
..+|.||++..... ++..++|||. +|.+|+..+... .-.||. |...+.
T Consensus 8 ~~~C~IC~~~~~~~-~~~~~pCgH~~~C~~C~~~~~~~-------~~~CPi--CR~~i~ 56 (64)
T 2vje_A 8 IEPCVICQGRPKNG-CIVHGKTGHLMACFTCAKKLKKR-------NKPCPV--CRQPIQ 56 (64)
T ss_dssp GSCCTTTSSSCSCE-EEEETTEEEEEECHHHHHHHHHT-------TCCCTT--TCCCCC
T ss_pred cCCCCcCCCCCCCE-EEECCCCCChhhHHHHHHHHHHc-------CCcCCC--cCcchh
Confidence 34699999876543 2222499999 899999988752 237998 887664
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.32 E-value=0.00013 Score=47.85 Aligned_cols=43 Identities=23% Similarity=0.669 Sum_probs=31.9
Q ss_pred ceecccCcccccCCCceecCCCCCc-chHHHHHHHHHHHhhcCcccccCCCCCCCCCCCH
Q 025608 41 SFVCEICVETKLRNESFSIKGCSHM-YCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEP 99 (250)
Q Consensus 41 ~~~C~iC~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 99 (250)
..+|+||++.+... .+++|+|. ||.+|+.+ ...||. |...+..
T Consensus 25 ~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~-----------~~~CP~--Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAI---VFVPCGHLVTCKQCAEA-----------VDKCPM--CYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH-----------CSBCTT--TCCBCCC
T ss_pred CCCCCcCCCCCCCE---EEecCCCHHHHHHHhhC-----------CCCCcc--CCceecC
Confidence 34699999876542 34699999 99999952 157998 8876654
No 66
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.31 E-value=0.00017 Score=50.66 Aligned_cols=50 Identities=18% Similarity=0.416 Sum_probs=37.3
Q ss_pred ceecccCcccccCCC---------------ceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCH
Q 025608 41 SFVCEICVETKLRNE---------------SFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEP 99 (250)
Q Consensus 41 ~~~C~iC~~~~~~~~---------------~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 99 (250)
.-.|+||++.+...- ....++|+|.|+..|+..|+.. ...||. |...+.+
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-------~~~CP~--Cr~~~~~ 101 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-------RQVCPL--DNREWEF 101 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-------CSBCSS--SCSBCCE
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-------CCcCcC--CCCccee
Confidence 346999999886431 1334699999999999999873 247997 8877653
No 67
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.25 E-value=0.00014 Score=46.01 Aligned_cols=47 Identities=17% Similarity=0.574 Sum_probs=34.5
Q ss_pred eecccCcccccCCCceecCCCCCc-chHHHHHHHHHHHhhcCcccccCCCCCCCCCCC
Q 025608 42 FVCEICVETKLRNESFSIKGCSHM-YCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLE 98 (250)
Q Consensus 42 ~~C~iC~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 98 (250)
..|.||++...... +...+|||. ||.+|...+... .-.||. |...+.
T Consensus 8 ~~C~IC~~~~~~~~-~~~~pCgH~~~C~~C~~~~~~~-------~~~CPi--CR~~i~ 55 (63)
T 2vje_B 8 KPCSLCEKRPRDGN-IIHGRTGHLVTCFHCARRLKKA-------GASCPI--CKKEIQ 55 (63)
T ss_dssp SBCTTTSSSBSCEE-EEETTEEEEEECHHHHHHHHHT-------TCBCTT--TCCBCC
T ss_pred CCCcccCCcCCCeE-EEecCCCCHhHHHHHHHHHHHh-------CCcCCC--cCchhh
Confidence 46999998765332 333599999 999999987752 147998 887764
No 68
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.21 E-value=0.00019 Score=47.56 Aligned_cols=42 Identities=29% Similarity=0.823 Sum_probs=32.1
Q ss_pred ecccCcccccCCCceecCCCCCc-chHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHH
Q 025608 43 VCEICVETKLRNESFSIKGCSHM-YCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPE 100 (250)
Q Consensus 43 ~C~iC~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~ 100 (250)
.|.||++.... ..+++|||. ||.+|+..+ ..||. |...+...
T Consensus 20 ~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~-----------~~CP~--Cr~~i~~~ 62 (79)
T 2yho_A 20 LCMVCCEEEIN---STFCPCGHTVCCESCAAQL-----------QSCPV--CRSRVEHV 62 (79)
T ss_dssp BCTTTSSSBCC---EEEETTCBCCBCHHHHTTC-----------SBCTT--TCCBCCEE
T ss_pred EeEEeCcccCc---EEEECCCCHHHHHHHHHhc-----------CcCCC--CCchhhCe
Confidence 69999987653 334599999 999999754 28998 88777653
No 69
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.06 E-value=0.00039 Score=59.74 Aligned_cols=48 Identities=29% Similarity=0.826 Sum_probs=37.3
Q ss_pred eecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHH
Q 025608 42 FVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPE 100 (250)
Q Consensus 42 ~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~ 100 (250)
.+|+||++.+.. ....+|+|.||..|+..|+.. ....||. |...+...
T Consensus 333 ~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~------~~~~CP~--CR~~i~~~ 380 (389)
T 2y1n_A 333 QLCKICAENDKD---VKIEPCGHLMCTSCLTSWQES------EGQGCPF--CRCEIKGT 380 (389)
T ss_dssp SBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHH------TCSBCTT--TCCBCCEE
T ss_pred CCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhc------CCCCCCC--CCCccCCc
Confidence 589999988754 234599999999999999873 2347998 88777654
No 70
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.74 E-value=0.0012 Score=43.04 Aligned_cols=52 Identities=23% Similarity=0.547 Sum_probs=38.8
Q ss_pred CCceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCH
Q 025608 39 SRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEP 99 (250)
Q Consensus 39 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 99 (250)
....+|.||++.+...+ ....|+|.|...|+.+|++.+ ..-.||. |+..+..
T Consensus 13 ~~i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~-----~~~~CP~--Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSN-----AEPRCPH--CNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTC-----SSCCCTT--TCSCCCS
T ss_pred CCCCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhc-----CCCCCCC--CcCcCCC
Confidence 34457999999987543 344999999999999999743 1247997 8776653
No 71
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.72 E-value=0.0003 Score=50.22 Aligned_cols=49 Identities=18% Similarity=0.451 Sum_probs=0.0
Q ss_pred eecccCcccccCCC---------------ceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCH
Q 025608 42 FVCEICVETKLRNE---------------SFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEP 99 (250)
Q Consensus 42 ~~C~iC~~~~~~~~---------------~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 99 (250)
-.|+||++++...- .....+|+|.|+..|+..|+... -.||. |...+..
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~-------~~CP~--Cr~~~~~ 112 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-------QVCPL--DNREWEF 112 (117)
T ss_dssp -------------------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC-------CcCCC--CCCeeee
Confidence 47999999985421 12234899999999999999852 36997 8776554
No 72
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.68 E-value=0.0012 Score=45.63 Aligned_cols=34 Identities=18% Similarity=0.543 Sum_probs=25.9
Q ss_pred ceecccCcccccCCCceecCCCCCcchHHHHHHH
Q 025608 41 SFVCEICVETKLRNESFSIKGCSHMYCVDCTVKY 74 (250)
Q Consensus 41 ~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~ 74 (250)
...|+||.+.+..+.+...+.|+|.||..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 3679999976443444445799999999999983
No 73
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.54 E-value=0.0029 Score=53.21 Aligned_cols=63 Identities=21% Similarity=0.473 Sum_probs=44.7
Q ss_pred CCCCceecccCcccccC-CCce----ecCCCCCcchHHHHHHHHHHHhhcC----cccccCCCCCCCCCCCHHH
Q 025608 37 ETSRSFVCEICVETKLR-NESF----SIKGCSHMYCVDCTVKYVDSKLQEN----VTSIGCPVTDCGGSLEPEY 101 (250)
Q Consensus 37 ~~~~~~~C~iC~~~~~~-~~~~----~~~~C~H~fC~~Cl~~~~~~~i~~~----~~~i~CP~~~C~~~l~~~~ 101 (250)
.+....+|+||++.+.. ..++ ....|+|.|...|+..|+.+.-... ...=.||. |+..++-..
T Consensus 304 ~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPy--Cr~pIs~sf 375 (381)
T 3k1l_B 304 EDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPF--CKAKLSTSF 375 (381)
T ss_dssp CCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTT--TCCEEEGGG
T ss_pred cccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCC--CCCcCCccH
Confidence 34566789999998865 3332 1348999999999999999764432 22337997 998877543
No 74
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=95.93 E-value=0.0016 Score=55.39 Aligned_cols=42 Identities=24% Similarity=0.843 Sum_probs=32.6
Q ss_pred ceecccCcccccCCCceecCCCCCc-chHHHHHHHHHHHhhcCcccccCCCCCCCCCCC
Q 025608 41 SFVCEICVETKLRNESFSIKGCSHM-YCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLE 98 (250)
Q Consensus 41 ~~~C~iC~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 98 (250)
...|+||++.+... .+++|||. ||..|+..+ ..||. |...+.
T Consensus 295 ~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~-----------~~CP~--CR~~i~ 337 (345)
T 3t6p_A 295 ERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL-----------RKCPI--CRGIIK 337 (345)
T ss_dssp TCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC-----------SBCTT--TCCBCC
T ss_pred CCCCCccCCcCCce---EEcCCCChhHhHHHHhcC-----------CcCCC--CCCCcc
Confidence 46799999977542 33499999 999999855 47998 887665
No 75
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.71 E-value=0.0084 Score=37.23 Aligned_cols=39 Identities=31% Similarity=0.775 Sum_probs=32.6
Q ss_pred CeecCCCCCCCCceecCccCccCcccCCc--ccchhccccCcccC
Q 025608 127 QKFYCPFKDCSALLIDDAGEAIRESECPN--CHRLFCAQCKVAWH 169 (250)
Q Consensus 127 ~~~~Cp~~~C~~~~~~~~~~~~~~~~C~~--C~~~~C~~C~~~~H 169 (250)
....|| .|+..+..+.+ -+.+.|.. |+..||+.|..+|.
T Consensus 5 ~~k~CP--~C~~~Iek~~G--CnhmtC~~~~C~~~FCw~C~~~~~ 45 (60)
T 1wd2_A 5 NTKECP--KCHVTIEKDGG--CNHMVCRNQNCKAEFCWVCLGPWE 45 (60)
T ss_dssp CCCCCT--TTCCCCSSCCS--CCSSSCCSSGGGSCCSSSSCSCSG
T ss_pred cceECc--CCCCeeEeCCC--CCcEEECCCCcCCEEeeCcCCCcc
Confidence 345898 99999888765 57799988 99999999999873
No 76
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=95.51 E-value=0.03 Score=34.65 Aligned_cols=49 Identities=22% Similarity=0.472 Sum_probs=34.6
Q ss_pred CceecccCcccccCCCceecCCCC--C---cchHHHHHHHHHHHhhcCcccccCCCCCCCCCCC
Q 025608 40 RSFVCEICVETKLRNESFSIKGCS--H---MYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLE 98 (250)
Q Consensus 40 ~~~~C~iC~~~~~~~~~~~~~~C~--H---~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~ 98 (250)
....|.||+++... .. ..+|. + .|..+||.+|+...- ...||. |+..+.
T Consensus 5 ~~~~CrIC~~~~~~-~l--~~PC~C~gs~~~~H~~Cl~~W~~~~~-----~~~C~~--C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGN-ER--FRACGCTGELENVHRSCLSTWLTISR-----NTACQI--CGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSC-CC--CCSCCCSSGGGSCCHHHHHHHHHHHT-----CSBCTT--TCCBCC
T ss_pred CCCEeEEeecCCCC-ce--ecCcCCCCchhhhHHHHHHHHHHhCC-----CCccCC--CCCeee
Confidence 34569999987533 22 34765 4 899999999998541 368998 876654
No 77
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=95.20 E-value=0.015 Score=39.73 Aligned_cols=33 Identities=21% Similarity=0.517 Sum_probs=25.2
Q ss_pred cccCcccccCCCceecCCCCCcchHHHHHHHHHHH
Q 025608 44 CEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSK 78 (250)
Q Consensus 44 C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~ 78 (250)
|++|.- +....-++.+|.|.||-+|...+.+..
T Consensus 4 C~~C~~--Pi~iygRmIPCkHvFCydCa~~~~~~~ 36 (101)
T 3vk6_A 4 CDKCGL--PIKVYGRMIPCKHVFCYDCAILHEKKG 36 (101)
T ss_dssp CTTTCS--BCSEEEEEETTCCEEEHHHHHHHHHTT
T ss_pred cCccCC--CeEEEeeeccccccHHHHHHHHHHhcc
Confidence 788854 434445678999999999999988743
No 78
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=94.81 E-value=0.025 Score=35.18 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=39.0
Q ss_pred ceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHHHHhc
Q 025608 41 SFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPEYCRD 104 (250)
Q Consensus 41 ~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~ 104 (250)
.+.|+|+++.+..+. ...++||.|++.++.+|+... + .||. .+..|..+++..
T Consensus 3 ~~~CpIs~~~m~dPV--~~~~sG~~yer~~I~~~l~~~---~----~cP~--t~~~L~~~~Lip 55 (61)
T 2bay_A 3 HMLCAISGKVPRRPV--LSPKSRTIFEKSLLEQYVKDT---G----NDPI--TNEPLSIEEIVE 55 (61)
T ss_dssp -CCCTTTCSCCSSEE--EETTTTEEEEHHHHHHHHHHH---S----BCTT--TCCBCCGGGCEE
T ss_pred eEEecCCCCCCCCCE--EeCCCCcEEcHHHHHHHHHhC---C----CCcC--CcCCCChhhcEE
Confidence 367999999887542 222899999999999999842 2 3887 777787766543
No 79
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=94.68 E-value=0.069 Score=34.59 Aligned_cols=52 Identities=21% Similarity=0.464 Sum_probs=38.2
Q ss_pred CCCCceecccCcccccCCCceecCC-CCCcchHHHHHHHHHHHhhcCcccccCCC
Q 025608 37 ETSRSFVCEICVETKLRNESFSIKG-CSHMYCVDCTVKYVDSKLQENVTSIGCPV 90 (250)
Q Consensus 37 ~~~~~~~C~iC~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~ 90 (250)
.+...+.|.+|.+.+.+..+....+ =.|.||-.|-+.+++.+-. ...|.||.
T Consensus 11 ~~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~--~~EvyCPS 63 (93)
T 2cs3_A 11 ANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGA--TGEVYCPS 63 (93)
T ss_dssp CSCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHS--SSCCCCTT
T ss_pred CCCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCC--CCcEECCC
Confidence 3456678999999888766543211 1399999999999998743 36788886
No 80
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=94.57 E-value=0.0075 Score=41.56 Aligned_cols=43 Identities=26% Similarity=0.585 Sum_probs=33.8
Q ss_pred ccCCCCCcceeccCCCcceEE-eccccccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRC-RCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C-~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..||=|.-.+. +-+++ .||+.||+.|...|-... ...||.|.+
T Consensus 23 ~~C~IC~~~~~-----~p~~~~~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~ 66 (100)
T 3lrq_A 23 FRCFICMEKLR-----DARLCPHCSKLCCFSCIRRWLTEQ-RAQCPHCRA 66 (100)
T ss_dssp TBCTTTCSBCS-----SEEECTTTCCEEEHHHHHHHHHHT-CSBCTTTCC
T ss_pred CCCccCCcccc-----CccccCCCCChhhHHHHHHHHHHC-cCCCCCCCC
Confidence 68999998876 36788 999999999999994322 256999964
No 81
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.99 E-value=0.032 Score=35.61 Aligned_cols=44 Identities=32% Similarity=0.769 Sum_probs=32.7
Q ss_pred ccCCCCCcceeccCCCcceEEeccccccccccccccC-CCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRCRCGHAFCYHCGVQLST-VSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~~-~~h~~~~~~~~~ 250 (250)
..||-|...+.. -++-.||+.||+.|...|-. ......||.|.+
T Consensus 21 ~~C~IC~~~~~~-----~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~ 65 (73)
T 2ysl_A 21 VICPICLDILQK-----PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKT 65 (73)
T ss_dssp CBCTTTCSBCSS-----EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCC
T ss_pred CEeccCCcccCC-----eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCC
Confidence 689999987652 33338999999999999953 234557999974
No 82
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=93.90 E-value=0.04 Score=33.00 Aligned_cols=45 Identities=27% Similarity=0.473 Sum_probs=32.5
Q ss_pred ccCCCCCcceeccCCCcceEE-eccccccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRC-RCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C-~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..||-|...+...+. -+.- .||+.||..|+..|-.. ...||.|.+
T Consensus 6 ~~C~IC~~~~~~~~~--~~~~~~C~H~f~~~Ci~~w~~~--~~~CP~Cr~ 51 (55)
T 1iym_A 6 VECAVCLAELEDGEE--ARFLPRCGHGFHAECVDMWLGS--HSTCPLCRL 51 (55)
T ss_dssp CCCTTTCCCCCTTSC--CEECSSSCCEECTTHHHHTTTT--CCSCSSSCC
T ss_pred CcCccCCccccCCCc--eEECCCCCCcccHHHHHHHHHc--CCcCcCCCC
Confidence 578888887765432 3444 59999999999999543 346999964
No 83
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=93.63 E-value=0.019 Score=37.01 Aligned_cols=44 Identities=25% Similarity=0.570 Sum_probs=32.7
Q ss_pred ccCCCCCcceeccCCCcceEEe-ccccccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRCR-CGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C~-C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..||-|...+.. -++=. ||+.||+.|...|-.......||.|.+
T Consensus 16 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~ 60 (74)
T 2yur_A 16 LLCLICKDIMTD-----AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQ 60 (74)
T ss_dssp GSCSSSCCCCTT-----CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCC
T ss_pred CCCcCCChHHhC-----CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCC
Confidence 689999887653 35555 999999999999953333457999964
No 84
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=93.53 E-value=0.025 Score=37.11 Aligned_cols=33 Identities=27% Similarity=0.787 Sum_probs=24.0
Q ss_pred ccCCCCCcceeccCCCcceEE-ecccc-----ccccccccc
Q 025608 202 NRCPNCKFYVEKKDGCSYIRC-RCGHA-----FCYHCGVQL 236 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C-~C~~~-----FC~~C~~~~ 236 (250)
..||.|+..+..++| ...| .|+.. ||--|++++
T Consensus 3 ~~CP~C~~~l~~~~~--~~~C~~C~~~~~~~afCPeCgq~L 41 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--TAHCETCAKDFSLQALCPDCRQPL 41 (81)
T ss_dssp CCCSSSCSCCEECSS--EEECTTTCCEEEEEEECSSSCSCC
T ss_pred CCCCCCCCccccCCC--ceECccccccCCCcccCcchhhHH
Confidence 589999999998877 5557 66643 566666665
No 85
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.48 E-value=0.034 Score=36.91 Aligned_cols=48 Identities=29% Similarity=0.599 Sum_probs=33.2
Q ss_pred ccCCCCCcceeccCCCcceEEeccccccccccccccC-CCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRCRCGHAFCYHCGVQLST-VSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~~-~~h~~~~~~~~~ 250 (250)
..||-|...+.....- -+.-.||+.||+.|...|-. ......||.|.+
T Consensus 16 ~~C~IC~~~~~~~~~~-~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~ 64 (88)
T 2ct2_A 16 LECPICMESFTEEQLR-PKLLHCGHTICRQCLEKLLASSINGVRCPFCSK 64 (88)
T ss_dssp CBCTTTCCBCCTTSSC-EEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCC
T ss_pred CCCccCCccccccCCC-eEECCCCChhhHHHHHHHHHcCCCCcCCCCCCC
Confidence 6899998877654211 12228999999999999932 223467999974
No 86
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=93.20 E-value=0.042 Score=32.84 Aligned_cols=45 Identities=24% Similarity=0.604 Sum_probs=32.7
Q ss_pred ccCCCCCcceeccCCCcceEE-eccccccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRC-RCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C-~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..||-|...+...+ +.+.- .|++.||+.|...|-... ..||.|.+
T Consensus 6 ~~C~IC~~~~~~~~--~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~ 51 (55)
T 2ecm_A 6 SGCPICLEDIHTSR--VVAHVLPCGHLLHRTCYEEMLKEG--YRCPLCSG 51 (55)
T ss_dssp CSCTTTCCCCCTTT--SCEEECTTSCEEETTHHHHHHHHT--CCCTTSCC
T ss_pred CcCcccChhhcCCC--cCeEecCCCCcccHHHHHHHHHcC--CcCCCCCC
Confidence 57888887664322 34566 899999999999994323 56999974
No 87
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.11 E-value=0.038 Score=34.21 Aligned_cols=42 Identities=33% Similarity=0.799 Sum_probs=31.2
Q ss_pred ccCCCCCcceeccCCCcceEEeccccccccccccccC-CCCCcCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRCRCGHAFCYHCGVQLST-VSHGYYCPSC 248 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~~-~~h~~~~~~~ 248 (250)
..||-|...+.. -++-.||+.||+.|+..|-. ......||.|
T Consensus 21 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 21 VICPICLDILQK-----PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CBCTTTCSBCSS-----CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCCCcCCchhCC-----eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 689999887653 33348999999999999943 2344569987
No 88
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=92.96 E-value=0.046 Score=39.89 Aligned_cols=42 Identities=29% Similarity=0.660 Sum_probs=31.7
Q ss_pred ccCCCCCcceeccCCCcceEEeccccccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRCRCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..||=|.-.+.. -++-.|||.||+.|...|-... ..||.|.+
T Consensus 54 ~~C~iC~~~~~~-----~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~ 95 (138)
T 4ayc_A 54 LQCIICSEYFIE-----AVTLNCAHSFCSYCINEWMKRK--IECPICRK 95 (138)
T ss_dssp SBCTTTCSBCSS-----EEEETTSCEEEHHHHHHHTTTC--SBCTTTCC
T ss_pred CCCcccCcccCC-----ceECCCCCCccHHHHHHHHHcC--CcCCCCCC
Confidence 479999887642 3445899999999999995433 45999964
No 89
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.88 E-value=0.024 Score=36.30 Aligned_cols=42 Identities=33% Similarity=0.643 Sum_probs=31.6
Q ss_pred ccCCCCCcceeccCCCcceEE-eccccccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRC-RCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C-~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..||-|...+.. -++- .||+.||+.|...|-.. ...||.|.+
T Consensus 16 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~ 58 (72)
T 2djb_A 16 ILCSICKGYLID-----ATTITECLHTFCKSCIVRHFYY--SNRCPKCNI 58 (72)
T ss_dssp GSCTTTSSCCSS-----CEECSSSCCEECHHHHHHHHHH--CSSCTTTCC
T ss_pred CCCCCCChHHHC-----cCEECCCCCHHHHHHHHHHHHc--CCcCCCcCc
Confidence 689999887654 4555 89999999999888432 346999864
No 90
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.58 E-value=0.054 Score=34.45 Aligned_cols=42 Identities=26% Similarity=0.593 Sum_probs=31.1
Q ss_pred ccCCCCCcceeccCCCcceEEeccccccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRCRCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..||-|...+.. -++-.||+.||+.|...|-... ..||.|.+
T Consensus 16 ~~C~IC~~~~~~-----~~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~ 57 (71)
T 2d8t_A 16 PECAICLQTCVH-----PVSLPCKHVFCYLCVKGASWLG--KRCALCRQ 57 (71)
T ss_dssp CBCSSSSSBCSS-----EEEETTTEEEEHHHHHHCTTCS--SBCSSSCC
T ss_pred CCCccCCcccCC-----CEEccCCCHHHHHHHHHHHHCC--CcCcCcCc
Confidence 689999876643 2444899999999999985333 56999964
No 91
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=92.53 E-value=0.043 Score=37.44 Aligned_cols=42 Identities=26% Similarity=0.638 Sum_probs=32.5
Q ss_pred ccCCCCCcceeccCCCcceEE-eccccccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRC-RCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C-~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..||-|...+.. -++- .||+.||..|...|-... ..||.|+.
T Consensus 23 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~ 65 (99)
T 2y43_A 23 LRCGICFEYFNI-----AMIIPQCSHNYCSLCIRKFLSYK--TQCPTCCV 65 (99)
T ss_dssp TBCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHHTTC--CBCTTTCC
T ss_pred CCcccCChhhCC-----cCEECCCCCHhhHHHHHHHHHCC--CCCCCCCC
Confidence 589999887653 4666 799999999999995433 46999974
No 92
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=92.52 E-value=0.049 Score=37.84 Aligned_cols=42 Identities=33% Similarity=0.686 Sum_probs=33.3
Q ss_pred ccCCCCCcceeccCCCcceEE-eccccccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRC-RCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C-~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..||-|...+.. -++- .||+.||+.|...|-... ..||.|.+
T Consensus 16 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~ 58 (108)
T 2ckl_A 16 LMCVLCGGYFID-----ATTIIECLHSFCKTCIVRYLETS--KYCPICDV 58 (108)
T ss_dssp TBCTTTSSBCSS-----EEEETTTCCEEEHHHHHHHHTSC--SBCTTTCC
T ss_pred CCCccCChHHhC-----cCEeCCCCChhhHHHHHHHHHhC--CcCcCCCc
Confidence 689999887653 5777 999999999999995433 56999964
No 93
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=92.44 E-value=0.05 Score=35.59 Aligned_cols=47 Identities=30% Similarity=0.745 Sum_probs=32.2
Q ss_pred ccCCCCCcceeccCCCcceEEeccccccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRCRCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..||=|.-++... .-.-+.|.|||.||..|+..+... ..+.||.|.+
T Consensus 12 ~~CpICle~~~~~-d~~~~p~~CGH~fC~~Cl~~~~~~-~~~~CP~CR~ 58 (78)
T 1e4u_A 12 VECPLCMEPLEID-DINFFPCTCGYQICRFCWHRIRTD-ENGLCPACRK 58 (78)
T ss_dssp CBCTTTCCBCCTT-TTTCCSSTTSCCCCHHHHHHHTTS-SCSBCTTTCC
T ss_pred CcCCccCccCccc-cccccccCCCCCcCHHHHHHHHhc-CCCCCCCCCC
Confidence 6899998866422 122333679999999998887432 3457999964
No 94
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=92.10 E-value=0.055 Score=34.11 Aligned_cols=44 Identities=27% Similarity=0.545 Sum_probs=31.3
Q ss_pred ccCCCCCcceeccCCCcceEE-eccccccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRC-RCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C-~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..||=|...+.... .+.- .||+.||+.|...|-... ..||.|.+
T Consensus 15 ~~C~IC~~~~~~~~---~~~~~~C~H~fc~~Ci~~~~~~~--~~CP~Cr~ 59 (69)
T 2kiz_A 15 EKCTICLSILEEGE---DVRRLPCMHLFHQVCVDQWLITN--KKCPICRV 59 (69)
T ss_dssp CSBTTTTBCCCSSS---CEEECTTSCEEEHHHHHHHHHHC--SBCTTTCS
T ss_pred CCCeeCCccccCCC---cEEEeCCCCHHHHHHHHHHHHcC--CCCcCcCc
Confidence 68999987664332 2444 899999999999994322 24999963
No 95
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=91.94 E-value=0.027 Score=37.89 Aligned_cols=44 Identities=25% Similarity=0.570 Sum_probs=32.0
Q ss_pred ccCCCCCcceeccCCCcceEEe-ccccccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRCR-CGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C~-C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..||-|..++.. -++-. ||+.||..|+..|-.......||.|.+
T Consensus 14 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~ 58 (92)
T 3ztg_A 14 LLCLICKDIMTD-----AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQ 58 (92)
T ss_dssp TEETTTTEECSS-----CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCC
T ss_pred CCCCCCChhhcC-----ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCC
Confidence 689999876652 35555 999999999988843223357999964
No 96
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=91.73 E-value=0.056 Score=40.63 Aligned_cols=43 Identities=28% Similarity=0.673 Sum_probs=33.6
Q ss_pred ccCCCCCcceeccCCCcceEE-eccccccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRC-RCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C-~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..||-|...+.. -++. .||+.||+.|...|-... ...||.|.+
T Consensus 55 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~ 98 (165)
T 2ckl_B 55 LMCPICLDMLKN-----TMTTKECLHRFCADCIITALRSG-NKECPTCRK 98 (165)
T ss_dssp HBCTTTSSBCSS-----EEEETTTCCEEEHHHHHHHHHTT-CCBCTTTCC
T ss_pred CCCcccChHhhC-----cCEeCCCCChhHHHHHHHHHHhC-cCCCCCCCC
Confidence 489999887763 5777 999999999999994322 346999974
No 97
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.69 E-value=0.056 Score=33.77 Aligned_cols=43 Identities=28% Similarity=0.755 Sum_probs=31.4
Q ss_pred ccCCCCCcceeccCCCcceEEeccccccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRCRCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..||-|...+... ++=.||+.||+.|...|-. .....||.|++
T Consensus 16 ~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~ 58 (66)
T 2ecy_A 16 YKCEKCHLVLCSP-----KQTECGHRFCESCMAALLS-SSSPKCTACQE 58 (66)
T ss_dssp EECTTTCCEESSC-----CCCSSSCCCCHHHHHHHHT-TSSCCCTTTCC
T ss_pred CCCCCCChHhcCe-----eECCCCCHHHHHHHHHHHH-hCcCCCCCCCc
Confidence 6899998876532 2228999999999999953 23346999974
No 98
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=91.56 E-value=0.074 Score=33.34 Aligned_cols=42 Identities=36% Similarity=0.756 Sum_probs=30.5
Q ss_pred ccCCCCCcceeccCCCcceEE-eccccccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRC-RCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C-~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..||-|...+.. -..- .||+.||+.|...|-... ..||.|++
T Consensus 6 ~~C~IC~~~~~~-----~~~~~~C~H~fc~~Ci~~~~~~~--~~CP~Cr~ 48 (68)
T 1chc_A 6 ERCPICLEDPSN-----YSMALPCLHAFCYVCITRWIRQN--PTCPLCKV 48 (68)
T ss_dssp CCCSSCCSCCCS-----CEEETTTTEEESTTHHHHHHHHS--CSTTTTCC
T ss_pred CCCeeCCccccC-----CcEecCCCCeeHHHHHHHHHhCc--CcCcCCCh
Confidence 579999887642 2345 899999999998884322 46999864
No 99
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=91.42 E-value=0.067 Score=34.61 Aligned_cols=44 Identities=25% Similarity=0.611 Sum_probs=31.7
Q ss_pred ccCCCCCcceeccCCCcceEEeccccccccccccccCC-----CCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRCRCGHAFCYHCGVQLSTV-----SHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~~~-----~h~~~~~~~~~ 250 (250)
..||-|...+.. -++-.||+.||..|...|-.. .....||.|.+
T Consensus 13 ~~C~IC~~~~~~-----p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~ 61 (79)
T 2egp_A 13 VTCPICLELLTE-----PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGI 61 (79)
T ss_dssp CEETTTTEECSS-----CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCC
T ss_pred CCCcCCCcccCC-----eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCC
Confidence 679999876543 233489999999999988433 22457999964
No 100
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=91.34 E-value=0.051 Score=34.40 Aligned_cols=48 Identities=29% Similarity=0.604 Sum_probs=33.8
Q ss_pred CccCCCCCcceecc-CCCcceEE-eccccccccccccccCCCCCcCCCCCCC
Q 025608 201 WNRCPNCKFYVEKK-DGCSYIRC-RCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 201 ~~~CP~C~~~i~k~-~GCnhm~C-~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
...||=|...+... .+=..+.- .||+.||+.|...|-... ..||.|.+
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~ 59 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--NTCPTCRK 59 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC--SBCTTTCC
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC--CCCCCCCC
Confidence 36899999876653 22234445 899999999999994323 36999964
No 101
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=91.23 E-value=0.054 Score=33.39 Aligned_cols=47 Identities=30% Similarity=0.610 Sum_probs=32.1
Q ss_pred ccCCCCCcceeccC-CCcceEE-eccccccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKD-GCSYIRC-RCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~-GCnhm~C-~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..||-|...+.... +=..+.- .||+.||..|...|-.. ...||.|.+
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~ 52 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRK 52 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--CSBCTTTCC
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--CCCCCCCCc
Confidence 57888887665431 2233344 89999999999999432 236999964
No 102
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.12 E-value=0.053 Score=34.01 Aligned_cols=47 Identities=30% Similarity=0.600 Sum_probs=32.9
Q ss_pred ccCCCCCcceeccCC-CcceEE-eccccccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDG-CSYIRC-RCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~G-Cnhm~C-~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..||-|...+..... =..+.- .||+.||..|...|-.. ...||.|.+
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~ 64 (69)
T 2ea6_A 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRK 64 (69)
T ss_dssp CCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH--CSSCTTTCC
T ss_pred CCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc--CCCCCCCCC
Confidence 689999887665422 123344 89999999999999432 236999964
No 103
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=91.11 E-value=0.064 Score=38.25 Aligned_cols=43 Identities=26% Similarity=0.573 Sum_probs=31.6
Q ss_pred ccCCCCCcceeccCCCcceEEeccccccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRCRCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..||-|.-.+.. -++=.|||.||..|...|-. .+...||.|.+
T Consensus 53 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~ 95 (124)
T 3fl2_A 53 FQCICCQELVFR-----PITTVCQHNVCKDCLDRSFR-AQVFSCPACRY 95 (124)
T ss_dssp TBCTTTSSBCSS-----EEECTTSCEEEHHHHHHHHH-TTCCBCTTTCC
T ss_pred CCCCcCChHHcC-----cEEeeCCCcccHHHHHHHHh-HCcCCCCCCCc
Confidence 589999887662 23348999999999988843 33446999964
No 104
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=91.09 E-value=0.21 Score=32.19 Aligned_cols=44 Identities=32% Similarity=0.582 Sum_probs=31.1
Q ss_pred ccCCCCCcceeccCCCcceEE-eccccccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRC-RCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C-~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..||=|...+.... .+.= .|++.||+.|+..|-... ..||.|.+
T Consensus 16 ~~C~IC~~~~~~~~---~~~~~~C~H~fc~~Ci~~~~~~~--~~CP~Cr~ 60 (78)
T 2ect_A 16 LECPVCKEDYALGE---SVRQLPCNHLFHDSCIVPWLEQH--DSCPVCRK 60 (78)
T ss_dssp CCCTTTTSCCCTTS---CEEECTTSCEEETTTTHHHHTTT--CSCTTTCC
T ss_pred CCCeeCCccccCCC---CEEEeCCCCeecHHHHHHHHHcC--CcCcCcCC
Confidence 68999987665432 2222 799999999999995322 46999964
No 105
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=90.91 E-value=0.062 Score=35.20 Aligned_cols=44 Identities=25% Similarity=0.615 Sum_probs=31.8
Q ss_pred ccCCCCCcceeccCCCcceEEeccccccccccccccCC----CCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRCRCGHAFCYHCGVQLSTV----SHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~~~----~h~~~~~~~~~ 250 (250)
..||-|...+... +.-.||+.||+.|...|-.. .....||.|.+
T Consensus 20 ~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~ 67 (85)
T 2ecw_A 20 VTCPICLELLKEP-----VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRV 67 (85)
T ss_dssp TSCTTTCSCCSSC-----EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCC
T ss_pred CCCcCCChhhCcc-----eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCC
Confidence 5899998876532 34489999999999988322 12457999964
No 106
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.86 E-value=0.053 Score=34.87 Aligned_cols=44 Identities=25% Similarity=0.594 Sum_probs=32.2
Q ss_pred ccCCCCCcceeccCCCcceEE-eccccccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRC-RCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C-~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..||=|...+.... .+.. .|++.||+.|...|-... ..||.|.+
T Consensus 24 ~~C~IC~~~~~~~~---~~~~l~C~H~fh~~Ci~~w~~~~--~~CP~Cr~ 68 (75)
T 1x4j_A 24 TLCVVCMCDFESRQ---LLRVLPCNHEFHAKCVDKWLKAN--RTCPICRA 68 (75)
T ss_dssp CEETTTTEECCBTC---EEEEETTTEEEETTHHHHHHHHC--SSCTTTCC
T ss_pred CCCeECCcccCCCC---eEEEECCCCHhHHHHHHHHHHcC--CcCcCcCC
Confidence 57998987665433 4455 899999999999994322 36999964
No 107
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.79 E-value=0.11 Score=31.21 Aligned_cols=42 Identities=29% Similarity=0.789 Sum_probs=30.6
Q ss_pred ccCCCCCcceeccCCCcceEEeccccccccccccccCC-CCCcCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRCRCGHAFCYHCGVQLSTV-SHGYYCPSC 248 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~~~-~h~~~~~~~ 248 (250)
..||-|...+... +.-.||+.||+.|...|-.. .....||.|
T Consensus 16 ~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 16 ASCSVCLEYLKEP-----VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CBCSSSCCBCSSC-----CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred CCCccCCcccCcc-----EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 6899998876542 23389999999999999322 244569987
No 108
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=90.60 E-value=0.096 Score=33.84 Aligned_cols=43 Identities=14% Similarity=0.219 Sum_probs=31.9
Q ss_pred ccCCCCCcceeccCCCcceEEeccccccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRCRCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..||=|..++.. -++-.||+.||..|...|-.. ....||.|++
T Consensus 9 ~~C~IC~~~~~~-----Pv~~~CgH~fc~~Ci~~~~~~-~~~~CP~C~~ 51 (78)
T 1t1h_A 9 FRCPISLELMKD-----PVIVSTGQTYERSSIQKWLDA-GHKTCPKSQE 51 (78)
T ss_dssp SSCTTTSCCCSS-----EEEETTTEEEEHHHHHHHHTT-TCCBCTTTCC
T ss_pred CCCCCccccccC-----CEEcCCCCeecHHHHHHHHHH-CcCCCCCCcC
Confidence 589999887653 344589999999999998532 2346999974
No 109
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=90.27 E-value=0.065 Score=33.36 Aligned_cols=47 Identities=28% Similarity=0.604 Sum_probs=27.6
Q ss_pred ccCCCCCc-ceeccCCCcceEEeccccccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKF-YVEKKDGCSYIRCRCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~-~i~k~~GCnhm~C~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..||-|.. .+....- ..+.=.||+.||+.|...|-.. ....||.|++
T Consensus 4 ~~C~IC~~~~~~~~~~-~~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~ 51 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSL-KLMVNVCGHTLCESCVDLLFVR-GAGNCPECGT 51 (65)
T ss_dssp TCCSTTTTHHHHCSSC-CEEECTTCCCEEHHHHHHHHHT-TSSSCTTTCC
T ss_pred CcCCcCCCCccCCCcc-CeecCCCCCHhHHHHHHHHHHc-CCCcCCCCCC
Confidence 46777776 4332210 0011268889999998888321 2345999874
No 110
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=90.20 E-value=0.38 Score=33.73 Aligned_cols=40 Identities=28% Similarity=0.668 Sum_probs=31.2
Q ss_pred ccCCCCCcceeccCCCcceEE-eccccccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRC-RCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C-~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..||-|...+.. -++= .||+.||+.|...|-. ..||.|.+
T Consensus 23 ~~C~IC~~~~~~-----pv~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~ 63 (117)
T 1jm7_B 23 LRCSRCTNILRE-----PVCLGGCEHIFCSNCVSDCIG----TGCPVCYT 63 (117)
T ss_dssp TSCSSSCSCCSS-----CBCCCSSSCCBCTTTGGGGTT----TBCSSSCC
T ss_pred CCCCCCChHhhC-----ccEeCCCCCHHHHHHHHHHhc----CCCcCCCC
Confidence 689999887653 3444 8999999999999954 56999964
No 111
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.20 E-value=0.057 Score=34.56 Aligned_cols=45 Identities=31% Similarity=0.630 Sum_probs=31.7
Q ss_pred ccCCCCCcceeccCCCcceEEeccccccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRCRCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..||-|...+..... .+.-.|++.||+.|...|-... ..||.|.+
T Consensus 16 ~~C~IC~~~~~~~~~--~~~~~C~H~f~~~Ci~~~~~~~--~~CP~Cr~ 60 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDE--LGICPCKHAFHRKCLIKWLEVR--KVCPLCNM 60 (74)
T ss_dssp CBCSSSCCBCCSSSC--EEEETTTEEEEHHHHHHHHHHC--SBCTTTCC
T ss_pred CCCcCCCcccCCCCc--EEEcCCCCEecHHHHHHHHHcC--CcCCCcCc
Confidence 689999887665432 1223799999999999994322 26999964
No 112
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.07 E-value=0.065 Score=35.01 Aligned_cols=42 Identities=24% Similarity=0.596 Sum_probs=30.9
Q ss_pred ccCCCCCcceeccCCCcceEEeccccccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRCRCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..||-|...+.. -++=.||+.||+.|...|-.. ...||.|.+
T Consensus 16 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~ 57 (81)
T 2csy_A 16 FRCFICRQAFQN-----PVVTKCRHYFCESCALEHFRA--TPRCYICDQ 57 (81)
T ss_dssp SBCSSSCSBCCS-----EEECTTSCEEEHHHHHHHHHH--CSBCSSSCC
T ss_pred CCCcCCCchhcC-----eeEccCCCHhHHHHHHHHHHC--CCcCCCcCc
Confidence 689999887643 233389999999999988532 346999864
No 113
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=90.04 E-value=0.26 Score=28.97 Aligned_cols=28 Identities=25% Similarity=0.558 Sum_probs=22.7
Q ss_pred CccCCCCCc-ceeccCCCcceEE-eccccc
Q 025608 201 WNRCPNCKF-YVEKKDGCSYIRC-RCGHAF 228 (250)
Q Consensus 201 ~~~CP~C~~-~i~k~~GCnhm~C-~C~~~F 228 (250)
...||.|+. .+.-+..=..+.| .||..|
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 468999998 7777777778999 998865
No 114
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=89.69 E-value=0.22 Score=34.43 Aligned_cols=44 Identities=27% Similarity=0.724 Sum_probs=31.1
Q ss_pred ccCCCCCcceeccCCCcceEEeccccccccccccccCC-CCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRCRCGHAFCYHCGVQLSTV-SHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~~~-~h~~~~~~~~~ 250 (250)
..||-|...+.. -++-.||+.||+.|...|-.. .....||.|..
T Consensus 22 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~ 66 (112)
T 1jm7_A 22 LECPICLELIKE-----PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKN 66 (112)
T ss_dssp TSCSSSCCCCSS-----CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSC
T ss_pred CCCcccChhhcC-----eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCC
Confidence 589999886642 122379999999999988432 22346999963
No 115
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=89.68 E-value=0.073 Score=32.72 Aligned_cols=43 Identities=28% Similarity=0.753 Sum_probs=34.6
Q ss_pred ccCCCCCcceeccCCCcceEE-eccccccccccccccCCCCCcCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRC-RCGHAFCYHCGVQLSTVSHGYYCPSCN 249 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C-~C~~~FC~~C~~~~~~~~h~~~~~~~~ 249 (250)
..|=.|...+...+ -..| +|+..||.-|-.=++..-|. ||.|.
T Consensus 16 ~~C~~C~~~~~~~~---~y~C~~C~~~FC~dCD~fiHe~Lh~--CPgC~ 59 (59)
T 1z60_A 16 RFCYGCQGELKDQH---VYVCAVCQNVFCVDCDVFVHDSLHS--CPGCI 59 (59)
T ss_dssp CEETTTTEECTTSE---EECCTTTTCCBCHHHHHTTTTTSCS--SSTTC
T ss_pred CcccccCcccCCCc---cEECCccCcCcccchhHHHHhhccC--CcCCC
Confidence 46888888775333 2779 99999999998888888887 99984
No 116
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=89.64 E-value=0.1 Score=34.98 Aligned_cols=44 Identities=30% Similarity=0.406 Sum_probs=31.8
Q ss_pred ccCCCCCcceeccCCCcceEE-eccccccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRC-RCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C-~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..||-|...+...+ .+.- .||+.||+.|...|-... ..||.|.+
T Consensus 41 ~~C~IC~~~~~~~~---~~~~l~C~H~Fh~~Ci~~wl~~~--~~CP~Cr~ 85 (91)
T 2l0b_A 41 MCCPICCSEYVKGD---VATELPCHHYFHKPCVSIWLQKS--GTCPVCRC 85 (91)
T ss_dssp SEETTTTEECCTTC---EEEEETTTEEEEHHHHHHHHTTT--CBCTTTCC
T ss_pred CCCcccChhhcCCC---cEEecCCCChHHHHHHHHHHHcC--CcCcCcCc
Confidence 57999987665433 2333 799999999999995322 36999964
No 117
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=89.03 E-value=0.23 Score=34.66 Aligned_cols=43 Identities=21% Similarity=0.546 Sum_probs=31.1
Q ss_pred ccCCCCCcceeccCCCcceEEeccccccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRCRCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..||-|...+.. -++=.||+.||..|...|-.. ....||.|.+
T Consensus 16 ~~C~iC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~ 58 (115)
T 3l11_A 16 CQCGICMEILVE-----PVTLPCNHTLCKPCFQSTVEK-ASLCCPFCRR 58 (115)
T ss_dssp HBCTTTCSBCSS-----CEECTTSCEECHHHHCCCCCT-TTSBCTTTCC
T ss_pred CCCccCCcccCc-----eeEcCCCCHHhHHHHHHHHhH-CcCCCCCCCc
Confidence 489999877653 222289999999999999532 2357999964
No 118
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.65 E-value=0.24 Score=32.35 Aligned_cols=47 Identities=23% Similarity=0.651 Sum_probs=30.8
Q ss_pred ccCCCCCcceec----------cCCCcceEEeccccccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEK----------KDGCSYIRCRCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k----------~~GCnhm~C~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..|+=|...++. .+.+..+.-.|++.|+..|..+|-... ..||.|.+
T Consensus 16 ~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--~~CP~CR~ 72 (81)
T 2ecl_A 16 DTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN--NRCPLCQQ 72 (81)
T ss_dssp SCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC--CBCTTTCC
T ss_pred CCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC--CCCCCcCC
Confidence 356666665543 233333333799999999999995433 36999974
No 119
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=88.21 E-value=0.15 Score=33.62 Aligned_cols=29 Identities=28% Similarity=0.609 Sum_probs=25.8
Q ss_pred CccCCCCCcceeccCCCcceEE-ecccccc
Q 025608 201 WNRCPNCKFYVEKKDGCSYIRC-RCGHAFC 229 (250)
Q Consensus 201 ~~~CP~C~~~i~k~~GCnhm~C-~C~~~FC 229 (250)
.-.||+|+....+..+=..+.| .|++.|-
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCCEEE
T ss_pred cCcCCCCCCcceeccCCCeEECCCCCCEec
Confidence 4799999999999988889999 9999874
No 120
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.09 E-value=0.17 Score=33.01 Aligned_cols=44 Identities=27% Similarity=0.667 Sum_probs=31.5
Q ss_pred ccCCCCCcceeccCCCcceEEeccccccccccccccCC----CCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRCRCGHAFCYHCGVQLSTV----SHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~~~----~h~~~~~~~~~ 250 (250)
..||-|...+... ++-.||+.||..|+..|-.. .....||.|.+
T Consensus 20 ~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~ 67 (85)
T 2ecv_A 20 VTCPICLELLTQP-----LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRI 67 (85)
T ss_dssp CCCTTTCSCCSSC-----BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCC
T ss_pred CCCCCCCcccCCc-----eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCC
Confidence 6899998876532 23389999999999988321 22457999963
No 121
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=87.92 E-value=0.087 Score=37.22 Aligned_cols=43 Identities=28% Similarity=0.692 Sum_probs=31.2
Q ss_pred ccCCCCCcceeccCCCcceEEeccccccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRCRCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..||-|...+... ++-.||+.||+.|...|-.... ..||.|.+
T Consensus 19 ~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~ 61 (118)
T 3hct_A 19 YECPICLMALREA-----VQTPCGHRFCKACIIKSIRDAG-HKCPVDNE 61 (118)
T ss_dssp GBCTTTCSBCSSE-----EECTTSCEEEHHHHHHHHHHHC-SBCTTTCC
T ss_pred CCCCcCChhhcCe-----EECCcCChhhHHHHHHHHhhCC-CCCCCCCC
Confidence 5899999876532 4458999999999988842222 26999863
No 122
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=87.81 E-value=0.32 Score=30.74 Aligned_cols=29 Identities=17% Similarity=0.160 Sum_probs=24.5
Q ss_pred CCccCCCCCcceeccCCCcceEE-eccccc
Q 025608 200 KWNRCPNCKFYVEKKDGCSYIRC-RCGHAF 228 (250)
Q Consensus 200 ~~~~CP~C~~~i~k~~GCnhm~C-~C~~~F 228 (250)
.+..||.|+..++-..+...+.| .||..|
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 7 DILVCPVTKGRLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCCBCSSSCCBCEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 45799999999988888889999 887765
No 123
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=87.00 E-value=0.27 Score=29.67 Aligned_cols=28 Identities=29% Similarity=0.521 Sum_probs=20.2
Q ss_pred CccCCCCCcceeccCCCcceEE-eccccc
Q 025608 201 WNRCPNCKFYVEKKDGCSYIRC-RCGHAF 228 (250)
Q Consensus 201 ~~~CP~C~~~i~k~~GCnhm~C-~C~~~F 228 (250)
.+.||+|+..+.-...-+.+.| +|++.+
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred cccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 3789999984432233468999 999875
No 124
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=86.75 E-value=0.19 Score=30.85 Aligned_cols=36 Identities=31% Similarity=0.821 Sum_probs=26.1
Q ss_pred cCCCCCCCCceecCccCccCcccCCcccchhccccCcccCCCC
Q 025608 130 YCPFKDCSALLIDDAGEAIRESECPNCHRLFCAQCKVAWHAGI 172 (250)
Q Consensus 130 ~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~ 172 (250)
.|- +|...+... ....|+.|+..||..|..-.|..+
T Consensus 17 ~C~--~C~~~~~~~-----~~y~C~~C~~~FC~dCD~fiHe~L 52 (59)
T 1z60_A 17 FCY--GCQGELKDQ-----HVYVCAVCQNVFCVDCDVFVHDSL 52 (59)
T ss_dssp EET--TTTEECTTS-----EEECCTTTTCCBCHHHHHTTTTTS
T ss_pred ccc--ccCcccCCC-----ccEECCccCcCcccchhHHHHhhc
Confidence 465 676665321 136799999999999999888664
No 125
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=85.99 E-value=0.6 Score=37.30 Aligned_cols=52 Identities=25% Similarity=0.540 Sum_probs=39.5
Q ss_pred CceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHH
Q 025608 40 RSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPE 100 (250)
Q Consensus 40 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~ 100 (250)
...+|.||.+-.... .....|++.|...|+.+|++.. ....||. |+..++.+
T Consensus 179 ~i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~-----~~~~CP~--C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSN-----AEPRCPH--CNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTC-----SSCBCTT--TCCBCCSC
T ss_pred CCCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhC-----CCCCCCC--CCCCCCCC
Confidence 366799999988754 3344599999999999998742 3458996 88877655
No 126
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=85.92 E-value=0.35 Score=28.54 Aligned_cols=27 Identities=26% Similarity=0.583 Sum_probs=19.2
Q ss_pred CccCCCCCc-ceeccCCCcceEE-eccccc
Q 025608 201 WNRCPNCKF-YVEKKDGCSYIRC-RCGHAF 228 (250)
Q Consensus 201 ~~~CP~C~~-~i~k~~GCnhm~C-~C~~~F 228 (250)
.+.||.|+. .++...+ +.+.| +||+.+
T Consensus 19 ~k~CP~CG~~~fm~~~~-~R~~C~kCG~t~ 47 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHG-DRWACGKCGYTE 47 (50)
T ss_dssp SEECSSSCSSCEEEECS-SEEECSSSCCEE
T ss_pred cccCCCCCCceEEecCC-CeEECCCCCCEE
Confidence 489999998 3343333 78899 888653
No 127
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.42 E-value=0.2 Score=31.52 Aligned_cols=40 Identities=28% Similarity=0.614 Sum_probs=29.1
Q ss_pred ccCCCCCcceeccCCCcceEEeccccccccccccccCCCCCcCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRCRCGHAFCYHCGVQLSTVSHGYYCPSCN 249 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~~~~h~~~~~~~~ 249 (250)
..||-|...+.. +.=.|++.||+.|...|-. ....||.|.
T Consensus 16 ~~C~IC~~~~~~------~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr 55 (70)
T 2ecn_A 16 EECCICMDGRAD------LILPCAHSFCQKCIDKWSD--RHRNCPICR 55 (70)
T ss_dssp CCCSSSCCSCCS------EEETTTEEECHHHHHHSSC--CCSSCHHHH
T ss_pred CCCeeCCcCccC------cccCCCCcccHHHHHHHHH--CcCcCCCcC
Confidence 689999886543 3348999999999998854 234588763
No 128
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=84.83 E-value=0.5 Score=28.31 Aligned_cols=39 Identities=28% Similarity=0.628 Sum_probs=24.8
Q ss_pred ccCCCCCcceeccCCCcceEEeccccccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRCRCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..||-|....... ++=.||+.||+.|...+ ...||.|.+
T Consensus 7 ~~C~IC~~~~~~p-----~~l~CgH~fC~~Ci~~~-----~~~CP~Cr~ 45 (56)
T 1bor_A 7 LRCQQCQAEAKCP-----KLLPCLHTLCSGCLEAS-----GMQCPICQA 45 (56)
T ss_dssp SSCSSSCSSCBCC-----SCSTTSCCSBTTTCSSS-----SSSCSSCCS
T ss_pred CCceEeCCccCCe-----EEcCCCCcccHHHHccC-----CCCCCcCCc
Confidence 5677776655421 11168888999998773 235888863
No 129
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=84.63 E-value=1.2 Score=28.27 Aligned_cols=37 Identities=30% Similarity=0.628 Sum_probs=27.6
Q ss_pred ccCCCCCcceeccCCCcceEE-ecccc-ccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRC-RCGHA-FCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C-~C~~~-FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..||-|..... ...= .||+. ||+.|...| ..||.|.+
T Consensus 25 ~~C~iC~~~~~------~~~~~pCgH~~~C~~C~~~~------~~CP~Cr~ 63 (74)
T 4ic3_A 25 KLCKICMDRNI------AIVFVPCGHLVTCKQCAEAV------DKCPMCYT 63 (74)
T ss_dssp TBCTTTSSSBC------CEEEETTCCBCCCHHHHTTC------SBCTTTCC
T ss_pred CCCCCCCCCCC------CEEEcCCCChhHHHHhhhcC------ccCCCcCc
Confidence 58999887543 2334 89999 999998888 45898863
No 130
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=83.71 E-value=0.25 Score=34.55 Aligned_cols=43 Identities=33% Similarity=0.786 Sum_probs=31.1
Q ss_pred ccCCCCCcceeccCCCcceEEeccccccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRCRCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..||-|...+.. -++-.||+.||+.|...|-... ...||.|.+
T Consensus 24 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~ 66 (116)
T 1rmd_A 24 ISCQICEHILAD-----PVETSCKHLFCRICILRCLKVM-GSYCPSCRY 66 (116)
T ss_dssp TBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHHHHT-CSBCTTTCC
T ss_pred CCCCCCCcHhcC-----cEEcCCCCcccHHHHHHHHhHC-cCcCCCCCC
Confidence 589999887653 2334899999999998884321 345999864
No 131
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=81.98 E-value=0.24 Score=37.23 Aligned_cols=43 Identities=28% Similarity=0.692 Sum_probs=31.9
Q ss_pred ccCCCCCcceeccCCCcceEEeccccccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRCRCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..||-|..++... +++.||+.||..|...|-.... ..||.|..
T Consensus 19 ~~C~IC~~~~~~p-----v~~~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~ 61 (170)
T 3hcs_A 19 YECPICLMALREA-----VQTPCGHRFCKACIIKSIRDAG-HKCPVDNE 61 (170)
T ss_dssp GBCTTTCSBCSSE-----EECTTSCEEEHHHHHHHHHHHC-SBCTTTCC
T ss_pred CCCCCCChhhcCc-----EECCCCCHHHHHHHHHHHHhCC-CCCCCCcc
Confidence 5899999887643 6679999999999998832211 26998863
No 132
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.55 E-value=1.1 Score=28.85 Aligned_cols=46 Identities=22% Similarity=0.493 Sum_probs=36.4
Q ss_pred CCccCCCCCcceeccCCCcceEE-eccccccccccccccCCCCCcCCCCCCC
Q 025608 200 KWNRCPNCKFYVEKKDGCSYIRC-RCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 200 ~~~~CP~C~~~i~k~~GCnhm~C-~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
.+..|+-|+..|.. -+.| .|++.|=..|+.+|-...+...||.|++
T Consensus 14 ~i~~C~IC~~~i~~-----g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~ 60 (74)
T 2ct0_A 14 AVKICNICHSLLIQ-----GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCND 60 (74)
T ss_dssp SSCBCSSSCCBCSS-----SEECSSSCCEECHHHHHHHSTTCSSCCCTTTCS
T ss_pred CCCcCcchhhHccc-----CCccCCCCchhhHHHHHHHHHhcCCCCCCCCcC
Confidence 45799999998874 3677 9999999999999954444467999974
No 133
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=81.51 E-value=0.46 Score=32.34 Aligned_cols=24 Identities=21% Similarity=0.646 Sum_probs=15.1
Q ss_pred ccCCCCCcceecc---CCCcceEE-ecc
Q 025608 202 NRCPNCKFYVEKK---DGCSYIRC-RCG 225 (250)
Q Consensus 202 ~~CP~C~~~i~k~---~GCnhm~C-~C~ 225 (250)
.-||.|+.+|.-- -=|+|+.| .|-
T Consensus 2 hfC~~C~~Pi~iygRmIPCkHvFCydCa 29 (101)
T 3vk6_A 2 HFCDKCGLPIKVYGRMIPCKHVFCYDCA 29 (101)
T ss_dssp CBCTTTCSBCSEEEEEETTCCEEEHHHH
T ss_pred eecCccCCCeEEEeeeccccccHHHHHH
Confidence 4689999987633 24555555 444
No 134
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=80.38 E-value=0.46 Score=35.06 Aligned_cols=43 Identities=23% Similarity=0.559 Sum_probs=30.8
Q ss_pred ccCCCCCcceeccCCCcceEEeccccccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRCRCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..||-|...+.. -++=.||+.||+.|...|-.. ....||.|..
T Consensus 79 ~~C~IC~~~~~~-----pv~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~ 121 (150)
T 1z6u_A 79 FMCVCCQELVYQ-----PVTTECFHNVCKDCLQRSFKA-QVFSCPACRH 121 (150)
T ss_dssp TBCTTTSSBCSS-----EEECTTSCEEEHHHHHHHHHT-TCCBCTTTCC
T ss_pred CEeecCChhhcC-----CEEcCCCCchhHHHHHHHHHh-CCCcCCCCCc
Confidence 589999886642 233489999999999888432 3346999863
No 135
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=79.89 E-value=1 Score=30.33 Aligned_cols=33 Identities=33% Similarity=0.978 Sum_probs=26.3
Q ss_pred ccCCCCCcceeccCCCcceEE-ecccc-----ccccccccc
Q 025608 202 NRCPNCKFYVEKKDGCSYIRC-RCGHA-----FCYHCGVQL 236 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C-~C~~~-----FC~~C~~~~ 236 (250)
..||.|+..++..+| +.+| .|+.. ||--|++++
T Consensus 33 ~~CP~Cq~eL~~~g~--~~hC~~C~~~f~~~a~CPdC~q~L 71 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--HARCRSCGEFIEMKALCPDCHQPL 71 (101)
T ss_dssp CBCSSSCSBEEEETT--EEEETTTCCEEEEEEECTTTCSBC
T ss_pred ccCccCCCcceecCC--EEECccccchhhccccCcchhhHH
Confidence 799999999998887 7779 88765 466676665
No 136
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=79.88 E-value=0.17 Score=37.02 Aligned_cols=41 Identities=24% Similarity=0.772 Sum_probs=29.7
Q ss_pred ccCCCCCcceeccCCCcceEEeccccccccccccccCCCCCcCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRCRCGHAFCYHCGVQLSTVSHGYYCPSC 248 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~~~~h~~~~~~~ 248 (250)
..||-|..++... ++..||+.||..|...|-. .....||.|
T Consensus 32 ~~C~IC~~~~~~p-----v~~~CgH~FC~~Ci~~~~~-~~~~~CP~C 72 (141)
T 3knv_A 32 YLCSACRNVLRRP-----FQAQCGHRYCSFCLASILS-SGPQNCAAC 72 (141)
T ss_dssp GBCTTTCSBCSSE-----EECTTSCEEEHHHHHHHGG-GSCEECHHH
T ss_pred cCCCCCChhhcCc-----EECCCCCccCHHHHHHHHh-cCCCCCCCC
Confidence 6899999876533 5558999999999988843 222357766
No 137
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=79.85 E-value=1.2 Score=28.22 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=22.8
Q ss_pred CCccCCCCCcceeccCCCcceEE-eccccc
Q 025608 200 KWNRCPNCKFYVEKKDGCSYIRC-RCGHAF 228 (250)
Q Consensus 200 ~~~~CP~C~~~i~k~~GCnhm~C-~C~~~F 228 (250)
.+..||.|+..++-..+=..+.| .||..|
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 7 DILVCPVCKGRLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CCCBCTTTCCBEEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCCcCEEeCCCCEEEcCCCCcee
Confidence 45799999998887766677888 887665
No 138
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=78.50 E-value=0.97 Score=31.21 Aligned_cols=34 Identities=29% Similarity=0.653 Sum_probs=24.9
Q ss_pred CCCcceEEeccccccccccccccCCCCCcCCCCCCC
Q 025608 215 DGCSYIRCRCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 215 ~GCnhm~C~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
++|.-+.=.|++.|+..|...|-... ..||.|.+
T Consensus 64 ~~~~~~~~~C~H~FH~~Ci~~Wl~~~--~~CP~Cr~ 97 (106)
T 3dpl_R 64 EECTVAWGVCNHAFHFHCISRWLKTR--QVCPLDNR 97 (106)
T ss_dssp -CCCEEEETTSCEEEHHHHHHHHTTC--SBCSSSCS
T ss_pred ccceEeecccCcEECHHHHHHHHHcC--CcCcCCCC
Confidence 45555555899999999999995332 45999964
No 139
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=78.38 E-value=1.3 Score=27.97 Aligned_cols=28 Identities=21% Similarity=0.314 Sum_probs=21.8
Q ss_pred CccCCCCCcceeccCCCcceEE-eccccc
Q 025608 201 WNRCPNCKFYVEKKDGCSYIRC-RCGHAF 228 (250)
Q Consensus 201 ~~~CP~C~~~i~k~~GCnhm~C-~C~~~F 228 (250)
+..||.|+..+.-..+=+.+.| .||..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 8 ILACPICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp TCCCTTTCCCCEECTTSSEEEETTTTEEE
T ss_pred heeCCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 4799999998886665567888 787665
No 140
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=78.25 E-value=0.5 Score=32.82 Aligned_cols=28 Identities=32% Similarity=0.776 Sum_probs=20.6
Q ss_pred eccccccccccccccCC---CCCcCCCCCCC
Q 025608 223 RCGHAFCYHCGVQLSTV---SHGYYCPSCNK 250 (250)
Q Consensus 223 ~C~~~FC~~C~~~~~~~---~h~~~~~~~~~ 250 (250)
.|++.||..|+..|-.. .....||.|.+
T Consensus 60 ~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~ 90 (114)
T 1v87_A 60 KCSHAFHLLCLLAMYCNGNKDGSLQCPSCKT 90 (114)
T ss_dssp SSCCEECHHHHHHHHHHTCCSSCCBCTTTCC
T ss_pred CCCCcccHHHHHHHHHcccCCCCCcCCCCCC
Confidence 79999999999999411 22346999964
No 141
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=77.11 E-value=0.49 Score=33.41 Aligned_cols=35 Identities=29% Similarity=0.628 Sum_probs=0.0
Q ss_pred cCCCcceEEeccccccccccccccCCCCCcCCCCCCC
Q 025608 214 KDGCSYIRCRCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 214 ~~GCnhm~C~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
.+.|.-+.-.|++.|+..|..+|-.. ...||-|.+
T Consensus 74 ~~~~~v~~~~C~H~FH~~CI~~Wl~~--~~~CP~Cr~ 108 (117)
T 4a0k_B 74 SEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNR 108 (117)
T ss_dssp -------------------------------------
T ss_pred ccccccccCCcCceEcHHHHHHHHHc--CCcCCCCCC
Confidence 34566666689999999999999533 235999864
No 142
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=76.44 E-value=1.3 Score=27.90 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=21.8
Q ss_pred CccCCCCCcceeccCCCcceEE-eccccc
Q 025608 201 WNRCPNCKFYVEKKDGCSYIRC-RCGHAF 228 (250)
Q Consensus 201 ~~~CP~C~~~i~k~~GCnhm~C-~C~~~F 228 (250)
+..||.|+..++-..+=..+.| .||..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp ECBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 4789999998887766677888 787655
No 143
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=75.49 E-value=1.9 Score=27.09 Aligned_cols=29 Identities=17% Similarity=0.152 Sum_probs=22.4
Q ss_pred CCccCCCCCcceeccCCCcceEE-eccccc
Q 025608 200 KWNRCPNCKFYVEKKDGCSYIRC-RCGHAF 228 (250)
Q Consensus 200 ~~~~CP~C~~~i~k~~GCnhm~C-~C~~~F 228 (250)
.+..||.|+..++-...=+.+.| .|+..|
T Consensus 9 eiL~CP~ck~~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 9 EVLACPKDKGPLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CCCBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred HHhCCCCCCCcCeEeCCCCEEEcCCCCccc
Confidence 45799999998887765567888 777655
No 144
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=75.32 E-value=1.4 Score=27.41 Aligned_cols=34 Identities=32% Similarity=0.635 Sum_probs=26.1
Q ss_pred CCceecccCcccccCCCceecCCC-CCcchHHHHHHHHH
Q 025608 39 SRSFVCEICVETKLRNESFSIKGC-SHMYCVDCTVKYVD 76 (250)
Q Consensus 39 ~~~~~C~iC~~~~~~~~~~~~~~C-~H~fC~~Cl~~~~~ 76 (250)
.+..-|-||.++.. +....| +-.||..||+..-.
T Consensus 6 ee~pWC~ICneDAt----lrC~gCdgDLYC~rC~rE~H~ 40 (67)
T 2d8v_A 6 SGLPWCCICNEDAT----LRCAGCDGDLYCARCFREGHD 40 (67)
T ss_dssp CCCSSCTTTCSCCC----EEETTTTSEEECSSHHHHHTT
T ss_pred cCCCeeEEeCCCCe----EEecCCCCceehHHHHHHHcc
Confidence 33445999998743 667799 68999999998764
No 145
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=72.78 E-value=1.8 Score=31.24 Aligned_cols=33 Identities=24% Similarity=0.458 Sum_probs=23.1
Q ss_pred CceecccCcccccC--CCceecCCCCCcchHHHHH
Q 025608 40 RSFVCEICVETKLR--NESFSIKGCSHMYCVDCTV 72 (250)
Q Consensus 40 ~~~~C~iC~~~~~~--~~~~~~~~C~H~fC~~Cl~ 72 (250)
..-.|.+|..++.. ........|.|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 34569999999842 2223466899999988743
No 146
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=72.72 E-value=6.4 Score=31.55 Aligned_cols=19 Identities=0% Similarity=-0.102 Sum_probs=14.4
Q ss_pred HhccCChHHHHHHHHHHHh
Q 025608 102 CRDILPEEAFDKWGKALCE 120 (250)
Q Consensus 102 i~~~l~~~~~~~~~~~~~~ 120 (250)
+..-++++++..|.+....
T Consensus 169 l~~~i~~~lL~~Yerir~~ 187 (256)
T 3na7_A 169 LVEKTEPKIYSFYERIRRW 187 (256)
T ss_dssp HHHTSCHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHh
Confidence 4455789999999988753
No 147
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=72.20 E-value=2.3 Score=28.08 Aligned_cols=41 Identities=22% Similarity=0.549 Sum_probs=29.8
Q ss_pred CcccCCcccchhccccCcccCCCCCchhHhhhccCCCchHHHHHHHHHhcCCCccCCCCCcceeccCCC
Q 025608 149 RESECPNCHRLFCAQCKVAWHAGIECADFQKLHKDEPESEDIILMKLAQNQKWNRCPNCKFYVEKKDGC 217 (250)
Q Consensus 149 ~~~~C~~C~~~~C~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP~C~~~i~k~~GC 217 (250)
..+.|..|++..|..|.. | ..+...+.||.|++...+..|.
T Consensus 34 ~FVAC~eC~FPvCrpCyE----------Y------------------ErkeG~q~CpqCktrYkr~kgs 74 (93)
T 1weo_A 34 LFVACNECGFPACRPCYE----------Y------------------ERREGTQNCPQCKTRYKRLRGS 74 (93)
T ss_dssp BCCSCSSSCCCCCHHHHH----------H------------------HHHTSCSSCTTTCCCCCCCTTC
T ss_pred EEEeeeccCChhhHHHHH----------H------------------HHhccCccccccCCccccccCC
Confidence 668899999999877763 1 1123448999999988766554
No 148
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=71.59 E-value=3.1 Score=35.64 Aligned_cols=43 Identities=26% Similarity=0.632 Sum_probs=31.3
Q ss_pred CccCCCCCcceeccCCCcceEE-eccccccccccccccCCCCCcCCCCCCC
Q 025608 201 WNRCPNCKFYVEKKDGCSYIRC-RCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 201 ~~~CP~C~~~i~k~~GCnhm~C-~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
...||-|..... .+.- .||+.||+.|...|-.. ....||.|.+
T Consensus 332 ~~~C~ICle~~~------~pv~lpCGH~FC~~Ci~~wl~~-~~~~CP~CR~ 375 (389)
T 2y1n_A 332 FQLCKICAENDK------DVKIEPCGHLMCTSCLTSWQES-EGQGCPFCRC 375 (389)
T ss_dssp SSBCTTTSSSBC------CEEEETTCCEECHHHHHHHHHH-TCSBCTTTCC
T ss_pred CCCCCccCcCCC------CeEEeCCCChhhHHHHHHHHhc-CCCCCCCCCC
Confidence 378999977653 2455 99999999999998431 2346999963
No 149
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=69.98 E-value=6.1 Score=25.31 Aligned_cols=36 Identities=33% Similarity=0.689 Sum_probs=25.0
Q ss_pred ccCCCCCcceeccCCCcceEE-ecccc-ccccccccccCCCCCcCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRC-RCGHA-FCYHCGVQLSTVSHGYYCPSCN 249 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C-~C~~~-FC~~C~~~~~~~~h~~~~~~~~ 249 (250)
..||-|..... .+.= .|||. ||+.|...+. .||.|.
T Consensus 19 ~~C~IC~~~~~------~~v~~pCgH~~~C~~C~~~~~------~CP~Cr 56 (79)
T 2yho_A 19 MLCMVCCEEEI------NSTFCPCGHTVCCESCAAQLQ------SCPVCR 56 (79)
T ss_dssp TBCTTTSSSBC------CEEEETTCBCCBCHHHHTTCS------BCTTTC
T ss_pred CEeEEeCcccC------cEEEECCCCHHHHHHHHHhcC------cCCCCC
Confidence 57988876432 2333 78888 8888887773 588875
No 150
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=69.69 E-value=2.6 Score=29.37 Aligned_cols=29 Identities=17% Similarity=0.481 Sum_probs=22.3
Q ss_pred CccCCCCCcceecc----CCCcceEE-ecccccc
Q 025608 201 WNRCPNCKFYVEKK----DGCSYIRC-RCGHAFC 229 (250)
Q Consensus 201 ~~~CP~C~~~i~k~----~GCnhm~C-~C~~~FC 229 (250)
.+-||.|+.++.-. .|.+.+.| .|++.+=
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~ 37 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYSEI 37 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSSSCCEEC
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCCCCCeEE
Confidence 36899999965433 36889999 9999873
No 151
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=69.15 E-value=2.6 Score=30.33 Aligned_cols=32 Identities=13% Similarity=0.415 Sum_probs=23.4
Q ss_pred hcCCCccCCCCCcceecc----CCCcceEE-eccccc
Q 025608 197 QNQKWNRCPNCKFYVEKK----DGCSYIRC-RCGHAF 228 (250)
Q Consensus 197 ~~~~~~~CP~C~~~i~k~----~GCnhm~C-~C~~~F 228 (250)
.-...+-||.|+.++.-. .|-..+.| .|++.+
T Consensus 20 ~~~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 20 HMTTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp --CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred cccCCeeCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 334569999999965433 26788999 999976
No 152
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=68.08 E-value=3.8 Score=23.52 Aligned_cols=30 Identities=20% Similarity=0.568 Sum_probs=22.5
Q ss_pred ecCCCCCCCCceecCccCccCcccCCcccchh
Q 025608 129 FYCPFKDCSALLIDDAGEAIRESECPNCHRLF 160 (250)
Q Consensus 129 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~ 160 (250)
+.|- .|+..+..++-...+.+.||.||+..
T Consensus 4 Y~C~--rCg~~fs~~el~~lP~IrCpyCGyri 33 (48)
T 4ayb_P 4 YRCG--KCWKTFTDEQLKVLPGVRCPYCGYKI 33 (48)
T ss_dssp -CCC--CTTTTCCCCCSCCCSSSCCTTTCCSC
T ss_pred EEee--ccCCCccHHHHhhCCCcccCccCcEE
Confidence 3566 78888777766677888999998764
No 153
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=66.70 E-value=3.5 Score=25.49 Aligned_cols=27 Identities=41% Similarity=0.824 Sum_probs=21.5
Q ss_pred CccCCCCCcceeccCCCcceEEecccccccc
Q 025608 201 WNRCPNCKFYVEKKDGCSYIRCRCGHAFCYH 231 (250)
Q Consensus 201 ~~~CP~C~~~i~k~~GCnhm~C~C~~~FC~~ 231 (250)
..+|..|+..+... -+.|+|+..||..
T Consensus 15 ~~rC~~C~kkvgl~----~f~CrCg~~FC~~ 41 (64)
T 1wfh_A 15 PNRCTVCRKRVGLT----GFMCRCGTTFCGS 41 (64)
T ss_dssp CCCCTTTCCCCCTT----CEECSSSCEECTT
T ss_pred CCcChhhCCccCcc----CEEeecCCEeccc
Confidence 37899999877655 3889999999863
No 154
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=66.28 E-value=3.2 Score=26.47 Aligned_cols=26 Identities=42% Similarity=0.911 Sum_probs=21.5
Q ss_pred ccCCCCCcceeccCCCcceEEecccccccc
Q 025608 202 NRCPNCKFYVEKKDGCSYIRCRCGHAFCYH 231 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C~C~~~FC~~ 231 (250)
.+|..|+..+...+ +.|+|+..||-.
T Consensus 26 nRC~~CrKkvgL~g----f~CrCg~~FCs~ 51 (74)
T 1wfl_A 26 NRCFMCRKKVGLTG----FDCRCGNLFCGL 51 (74)
T ss_dssp TBCSSSCCBCGGGC----EECTTSCEECSS
T ss_pred CcChhhCCcccccC----eecCCCCEechh
Confidence 58999999877763 899999999853
No 155
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=63.97 E-value=4.6 Score=29.04 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=24.0
Q ss_pred CCCeecCCCCCCCCceecCccC--ccCcccCCcccchh
Q 025608 125 GAQKFYCPFKDCSALLIDDAGE--AIRESECPNCHRLF 160 (250)
Q Consensus 125 ~~~~~~Cp~~~C~~~~~~~~~~--~~~~~~C~~C~~~~ 160 (250)
.....+|| .|++++.+..+. ....+.|+.|++..
T Consensus 21 ~~~~~FCP--eCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 21 MTTFRFCR--DCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp -CCCCBCT--TTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred ccCCeeCC--CCCCEeeECccCCCceeEEECCCCCCcE
Confidence 34456999 999999887432 34568898888753
No 156
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=63.34 E-value=14 Score=25.78 Aligned_cols=48 Identities=21% Similarity=0.392 Sum_probs=31.6
Q ss_pred CChHHHHHHHHHHHhhc-cCC---------CCeecCCCCCCCCceecCccCccCcc-cCCcccch
Q 025608 106 LPEEAFDKWGKALCESL-IPG---------AQKFYCPFKDCSALLIDDAGEAIRES-ECPNCHRL 159 (250)
Q Consensus 106 l~~~~~~~~~~~~~~~~-~~~---------~~~~~Cp~~~C~~~~~~~~~~~~~~~-~C~~C~~~ 159 (250)
+.++.+......+.+.+ +.. +...+|. +|+..+..+. ... .||.|+..
T Consensus 41 v~~e~l~f~f~~~~~gt~~~e~a~L~i~~~p~~~~C~--~CG~~~e~~~----~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 41 MDKSLFVSAFETFREESLVCKDAILDIVDEKVELECK--DCSHVFKPNA----LDYGVCEKCHSK 99 (119)
T ss_dssp CCHHHHHHHHHHHGGGCTTTSSCCEEEEEECCEEECS--SSSCEECSCC----STTCCCSSSSSC
T ss_pred ccHHHHHHHHHHHHhCChhhcCcEEEEEeccceEEcC--CCCCEEeCCC----CCCCcCccccCC
Confidence 35677777767666655 333 3456999 9998877643 335 78888754
No 157
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=63.02 E-value=4.1 Score=25.22 Aligned_cols=27 Identities=37% Similarity=0.822 Sum_probs=21.0
Q ss_pred CccCCCCCcceeccCCCcceEEecccccccc
Q 025608 201 WNRCPNCKFYVEKKDGCSYIRCRCGHAFCYH 231 (250)
Q Consensus 201 ~~~CP~C~~~i~k~~GCnhm~C~C~~~FC~~ 231 (250)
..+|..|+..+... -+.|+|+..||-.
T Consensus 15 ~~rC~~C~kkvgl~----~f~CrCg~~FC~~ 41 (64)
T 1wg2_A 15 NNRCFSCNKKVGVM----GFKCKCGSTFCGS 41 (64)
T ss_dssp SCSCTTTCCCCTTS----CEECTTSCEECSS
T ss_pred CCcChhhCCccccc----CeEeecCCEeccc
Confidence 36899999876654 4889999999863
No 158
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=61.66 E-value=5.2 Score=24.17 Aligned_cols=27 Identities=22% Similarity=0.445 Sum_probs=17.7
Q ss_pred CccCCCCCc-ceeccCCCcceEE-ecccc
Q 025608 201 WNRCPNCKF-YVEKKDGCSYIRC-RCGHA 227 (250)
Q Consensus 201 ~~~CP~C~~-~i~k~~GCnhm~C-~C~~~ 227 (250)
+..||.|+. .|.....=..+.| .||..
T Consensus 11 ~~~Cp~C~~~~lv~D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 11 RVTCPNHPDAILVEDYRAGDMICPECGLV 39 (58)
T ss_dssp CCSBTTBSSSCCEECSSSCCEECTTTCCE
T ss_pred cccCcCCCCCceeEeCCCCeEEeCCCCCE
Confidence 358999986 4555544455777 77654
No 159
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=61.15 E-value=3.8 Score=28.73 Aligned_cols=23 Identities=22% Similarity=0.622 Sum_probs=14.8
Q ss_pred cccccccccccCCCCCc-CCCCCC
Q 025608 227 AFCYHCGVQLSTVSHGY-YCPSCN 249 (250)
Q Consensus 227 ~FC~~C~~~~~~~~h~~-~~~~~~ 249 (250)
.+|..|+..+......+ .||.|+
T Consensus 74 ~~C~~CG~~~e~~~~~~~~CP~Cg 97 (119)
T 2kdx_A 74 LECKDCSHVFKPNALDYGVCEKCH 97 (119)
T ss_dssp EECSSSSCEECSCCSTTCCCSSSS
T ss_pred EEcCCCCCEEeCCCCCCCcCcccc
Confidence 45556666665445566 788886
No 160
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=60.04 E-value=3.1 Score=25.42 Aligned_cols=14 Identities=29% Similarity=0.987 Sum_probs=11.2
Q ss_pred CCCccCCCCCccee
Q 025608 199 QKWNRCPNCKFYVE 212 (250)
Q Consensus 199 ~~~~~CP~C~~~i~ 212 (250)
..++.||+|+++..
T Consensus 4 s~mr~C~~CgvYTL 17 (60)
T 2apo_B 4 MRMKKCPKCGLYTL 17 (60)
T ss_dssp CCCEECTTTCCEES
T ss_pred hhceeCCCCCCEec
Confidence 35689999999765
No 161
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=59.92 E-value=4.5 Score=28.53 Aligned_cols=29 Identities=14% Similarity=0.433 Sum_probs=22.6
Q ss_pred CccCCCCCcceecc----CCCcceEE-ecccccc
Q 025608 201 WNRCPNCKFYVEKK----DGCSYIRC-RCGHAFC 229 (250)
Q Consensus 201 ~~~CP~C~~~i~k~----~GCnhm~C-~C~~~FC 229 (250)
.+-||.|+.++.-. .+-+.+.| .|++.+=
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~ 37 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEE 37 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEE
T ss_pred CCcccccCccCcccccCcCCCCEEECCcCCCeee
Confidence 47899999966633 56889999 9998763
No 162
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=59.14 E-value=10 Score=26.74 Aligned_cols=35 Identities=17% Similarity=0.526 Sum_probs=25.1
Q ss_pred CceecccCcccccCC-CceecCCCCCcchHHHHHHH
Q 025608 40 RSFVCEICVETKLRN-ESFSIKGCSHMYCVDCTVKY 74 (250)
Q Consensus 40 ~~~~C~iC~~~~~~~-~~~~~~~C~H~fC~~Cl~~~ 74 (250)
....|.+|...|+.- .-.....||..||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 344699999988632 11336699999999997654
No 163
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=58.55 E-value=4.7 Score=30.84 Aligned_cols=29 Identities=21% Similarity=0.395 Sum_probs=22.4
Q ss_pred CccCCCCCc-ceeccCCCcceEE-eccccccc
Q 025608 201 WNRCPNCKF-YVEKKDGCSYIRC-RCGHAFCY 230 (250)
Q Consensus 201 ~~~CP~C~~-~i~k~~GCnhm~C-~C~~~FC~ 230 (250)
.+.||+|+. +++....+.| +| +|++.|.|
T Consensus 113 ~~~Cp~Cg~g~fma~h~dR~-~CGkC~~t~~~ 143 (189)
T 2xzm_9 113 QKGCPKCGPGIFMAKHYDRH-YCGKCHLTLKI 143 (189)
T ss_dssp SEECSTTCSSCEEEECSSCE-EETTTCCCBCC
T ss_pred cccCCccCCCccccCccCCC-ccCCceeEEEe
Confidence 389999997 4566666655 99 99998865
No 164
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=58.05 E-value=3.2 Score=26.24 Aligned_cols=24 Identities=29% Similarity=0.772 Sum_probs=16.1
Q ss_pred ccCCCCCcceeccCCCcceEE-eccc
Q 025608 202 NRCPNCKFYVEKKDGCSYIRC-RCGH 226 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C-~C~~ 226 (250)
-.|+.|+..++...+ +-+.| .||+
T Consensus 29 Y~C~~CG~~~e~~~~-d~irCp~CG~ 53 (70)
T 1twf_L 29 YICAECSSKLSLSRT-DAVRCKDCGH 53 (70)
T ss_dssp EECSSSCCEECCCTT-STTCCSSSCC
T ss_pred EECCCCCCcceeCCC-CCccCCCCCc
Confidence 578888887666544 45666 6665
No 165
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=57.89 E-value=2.8 Score=30.38 Aligned_cols=8 Identities=38% Similarity=0.986 Sum_probs=6.5
Q ss_pred CcCCCCCC
Q 025608 242 GYYCPSCN 249 (250)
Q Consensus 242 ~~~~~~~~ 249 (250)
+..||+|+
T Consensus 107 ~~~CP~Cg 114 (139)
T 3a43_A 107 FLACPKCG 114 (139)
T ss_dssp GCSCSSSS
T ss_pred CCcCcccc
Confidence 56799996
No 166
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=57.08 E-value=5.9 Score=32.79 Aligned_cols=28 Identities=25% Similarity=0.735 Sum_probs=19.8
Q ss_pred CccCCCCCcc----eec----cCCCcceEE-eccccc
Q 025608 201 WNRCPNCKFY----VEK----KDGCSYIRC-RCGHAF 228 (250)
Q Consensus 201 ~~~CP~C~~~----i~k----~~GCnhm~C-~C~~~F 228 (250)
-..||-||.. +.+ .+|=-+++| .|+++|
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W 218 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEW 218 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEE
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEE
Confidence 3799999982 223 356677888 888876
No 167
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=56.77 E-value=8.4 Score=23.08 Aligned_cols=27 Identities=33% Similarity=0.853 Sum_probs=19.0
Q ss_pred CCccCCCCCcceeccCCCcceEEe---ccccc
Q 025608 200 KWNRCPNCKFYVEKKDGCSYIRCR---CGHAF 228 (250)
Q Consensus 200 ~~~~CP~C~~~i~k~~GCnhm~C~---C~~~F 228 (250)
.+..||.|+..++-.+ +.+.|. |+..|
T Consensus 9 ~iL~CP~c~~~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 9 EILACPACHAPLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp TSCCCSSSCSCEEEET--TEEEECSSSCCCEE
T ss_pred hheeCCCCCCcceecC--CEEEcCCcCCCcEE
Confidence 3579999999877666 566663 65543
No 168
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=56.32 E-value=5.4 Score=30.16 Aligned_cols=24 Identities=29% Similarity=0.870 Sum_probs=20.9
Q ss_pred ccCCCCCcceeccCCCcceEE-ecccc
Q 025608 202 NRCPNCKFYVEKKDGCSYIRC-RCGHA 227 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C-~C~~~ 227 (250)
-.||.|+.++.+.+ ++|.| .||..
T Consensus 141 a~~~~~g~~m~~~~--~~~~cp~~g~~ 165 (179)
T 3m7n_A 141 ALCSNCKTEMVREG--DILKCPECGRV 165 (179)
T ss_dssp CBCTTTCCBCEECS--SSEECSSSCCE
T ss_pred ecccccCCceEECC--CEEECCCCCCE
Confidence 68999999988876 99999 99864
No 169
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=55.16 E-value=13 Score=27.32 Aligned_cols=31 Identities=23% Similarity=0.496 Sum_probs=23.1
Q ss_pred ceecccCccccc--CCCceecCCCCCcchHHHH
Q 025608 41 SFVCEICVETKL--RNESFSIKGCSHMYCVDCT 71 (250)
Q Consensus 41 ~~~C~iC~~~~~--~~~~~~~~~C~H~fC~~Cl 71 (250)
.-.|.+|..++. .........|.|.+|..|-
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 456999999863 2233446699999999997
No 170
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=54.84 E-value=6.8 Score=24.93 Aligned_cols=27 Identities=37% Similarity=0.846 Sum_probs=21.1
Q ss_pred CCccCCCCCcceeccCCCcceEEeccccccc
Q 025608 200 KWNRCPNCKFYVEKKDGCSYIRCRCGHAFCY 230 (250)
Q Consensus 200 ~~~~CP~C~~~i~k~~GCnhm~C~C~~~FC~ 230 (250)
...+|-.|+..+... -+.|+|+..||-
T Consensus 24 ~~~RC~~C~kkvgL~----~f~CrCg~~FCs 50 (74)
T 1wfp_A 24 TATRCLSCNKKVGVT----GFKCRCGSTFCG 50 (74)
T ss_dssp CCCBCSSSCCBCTTT----CEECTTSCEECT
T ss_pred cCccchhhcCccccc----ceEeccCCEecc
Confidence 347898898876665 488999999985
No 171
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=52.90 E-value=6.2 Score=27.41 Aligned_cols=30 Identities=23% Similarity=0.599 Sum_probs=22.2
Q ss_pred ecCCCCCCCCceecCcc--CccCcccCCcccchh
Q 025608 129 FYCPFKDCSALLIDDAG--EAIRESECPNCHRLF 160 (250)
Q Consensus 129 ~~Cp~~~C~~~~~~~~~--~~~~~~~C~~C~~~~ 160 (250)
.+|| .|++++....+ .....+.|+.|++..
T Consensus 5 ~FCp--~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 5 QYCI--ECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCS--SSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred eeCc--CCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 4898 99999887743 334578888888764
No 172
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=52.67 E-value=4 Score=31.07 Aligned_cols=73 Identities=16% Similarity=0.261 Sum_probs=43.1
Q ss_pred ecccCcccccCCC----ceecCCCCCcchHHHHHHHHH--HHhhc--CcccccCCCCCCCCCCCHHHHhccCChHHHHHH
Q 025608 43 VCEICVETKLRNE----SFSIKGCSHMYCVDCTVKYVD--SKLQE--NVTSIGCPVTDCGGSLEPEYCRDILPEEAFDKW 114 (250)
Q Consensus 43 ~C~iC~~~~~~~~----~~~~~~C~H~fC~~Cl~~~~~--~~i~~--~~~~i~CP~~~C~~~l~~~~i~~~l~~~~~~~~ 114 (250)
.|+||...+..++ ++....|...|...|..-.-. ..+.+ ......||. |...-... ++..+..++.+.+
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~--C~~~~~~~-~~~~~~~el~~~l 80 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVN--CTERHPAE-WRLALEKELQISL 80 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTT--TCCSSSCH-HHHHHHHHHHHHH
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcC--CCCCCCHH-HHHHHHHHHHHHH
Confidence 4999998887664 667778998888888753221 11111 113689997 76554432 3433444444444
Q ss_pred HHHH
Q 025608 115 GKAL 118 (250)
Q Consensus 115 ~~~~ 118 (250)
.+.+
T Consensus 81 ~~vl 84 (183)
T 3lqh_A 81 KQVL 84 (183)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 173
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=52.38 E-value=8.1 Score=25.38 Aligned_cols=29 Identities=24% Similarity=0.608 Sum_probs=22.3
Q ss_pred CCccCCCCCcc------eeccCCCcceEE-eccccc
Q 025608 200 KWNRCPNCKFY------VEKKDGCSYIRC-RCGHAF 228 (250)
Q Consensus 200 ~~~~CP~C~~~------i~k~~GCnhm~C-~C~~~F 228 (250)
..-.||.|+.. |.|..|=-++.| .|+..|
T Consensus 22 t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~ 57 (85)
T 1wii_A 22 TQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEF 57 (85)
T ss_dssp SCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEE
T ss_pred CeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeE
Confidence 34689999874 345578888999 999877
No 174
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=51.77 E-value=8.8 Score=30.44 Aligned_cols=47 Identities=21% Similarity=0.509 Sum_probs=35.7
Q ss_pred CCCccCCCCCcceeccCCCcceEE-eccccccccccccccCCCCCcCCCCCCC
Q 025608 199 QKWNRCPNCKFYVEKKDGCSYIRC-RCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 199 ~~~~~CP~C~~~i~k~~GCnhm~C-~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..++.|.-|+..+... ..| .|++.|=..|...|-.......||.|+.
T Consensus 178 ~~i~~C~iC~~iv~~g-----~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~ 225 (238)
T 3nw0_A 178 DAVKICNICHSLLIQG-----QSCETCGIRMHLPCVAKYFQSNAEPRCPHCND 225 (238)
T ss_dssp TTCCBCTTTCSBCSSC-----EECSSSCCEECHHHHHHHTTTCSSCBCTTTCC
T ss_pred CCCCcCcchhhHHhCC-----cccCccChHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 3589999999988853 667 6999998899988843233346999984
No 175
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=51.77 E-value=8.5 Score=25.24 Aligned_cols=28 Identities=29% Similarity=0.704 Sum_probs=20.9
Q ss_pred CccCCCCCcceeccCCCcceEEecccccccc
Q 025608 201 WNRCPNCKFYVEKKDGCSYIRCRCGHAFCYH 231 (250)
Q Consensus 201 ~~~CP~C~~~i~k~~GCnhm~C~C~~~FC~~ 231 (250)
..+|..|+..+--. +-+.|+||..||-.
T Consensus 25 ~~rC~~C~kkvgl~---~~f~CrCg~~FC~~ 52 (85)
T 1wff_A 25 MKHCFLCGKKTGLA---TSFECRCGNNFCAS 52 (85)
T ss_dssp CCBCSSSCCBCSSS---SCEECTTCCEECTT
T ss_pred CccchhhCCeeccc---CCeEcCCCCEeccc
Confidence 36899999865543 34899999999853
No 176
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=51.30 E-value=19 Score=30.29 Aligned_cols=37 Identities=30% Similarity=0.700 Sum_probs=27.9
Q ss_pred ccCCCCCcceeccCCCcceEE-ecccc-ccccccccccCCCCCcCCCCCCC
Q 025608 202 NRCPNCKFYVEKKDGCSYIRC-RCGHA-FCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C-~C~~~-FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
..||-|..... ...- .||+. ||+.|...+ ..||.|..
T Consensus 296 ~~C~IC~~~~~------~~v~lpCgH~~fC~~C~~~~------~~CP~CR~ 334 (345)
T 3t6p_A 296 RTCKVCMDKEV------SVVFIPCGHLVVCQECAPSL------RKCPICRG 334 (345)
T ss_dssp CBCTTTSSSBC------CEEEETTCCEEECTTTGGGC------SBCTTTCC
T ss_pred CCCCccCCcCC------ceEEcCCCChhHhHHHHhcC------CcCCCCCC
Confidence 68999987653 2333 89999 999999887 35998863
No 177
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=51.03 E-value=5.2 Score=25.35 Aligned_cols=24 Identities=29% Similarity=0.775 Sum_probs=12.9
Q ss_pred ccCCCCCcceeccCCCcceEEeccc
Q 025608 202 NRCPNCKFYVEKKDGCSYIRCRCGH 226 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C~C~~ 226 (250)
..|| |+...--.+|=..-.|.||.
T Consensus 5 v~C~-C~~~~~~~~~~kT~~C~CG~ 28 (71)
T 1gh9_A 5 FRCD-CGRALYSREGAKTRKCVCGR 28 (71)
T ss_dssp EEET-TSCCEEEETTCSEEEETTTE
T ss_pred EECC-CCCEEEEcCCCcEEECCCCC
Confidence 4566 66655555555555554443
No 178
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=49.27 E-value=10 Score=24.48 Aligned_cols=36 Identities=25% Similarity=0.682 Sum_probs=26.5
Q ss_pred CCeecCCCCCCCCceecCccCccCcccCCcccchhccccCcc
Q 025608 126 AQKFYCPFKDCSALLIDDAGEAIRESECPNCHRLFCAQCKVA 167 (250)
Q Consensus 126 ~~~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~ 167 (250)
.....|. .|+..|... ..+..|..||..||..|-..
T Consensus 17 ~~~~~C~--~C~~~Fs~~----~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 17 DEATHCR--QCEKEFSIS----RRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCBCT--TTCCBCBTT----BCCEECTTTCCEECSGGGCE
T ss_pred ccCCccc--CcCCcccCc----cccccCCCCCCEEChHHhCC
Confidence 3445787 788766543 25678999999999999763
No 179
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=49.22 E-value=6.3 Score=21.03 Aligned_cols=16 Identities=25% Similarity=0.646 Sum_probs=12.3
Q ss_pred CCceecccCcccccCC
Q 025608 39 SRSFVCEICVETKLRN 54 (250)
Q Consensus 39 ~~~~~C~iC~~~~~~~ 54 (250)
.+.|.||+|+.++...
T Consensus 3 ~EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 3 SEGFICPQCMKSLGSA 18 (34)
T ss_dssp SEEEECTTTCCEESSH
T ss_pred CcccCCcHHHHHcCCH
Confidence 4568999999887653
No 180
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=48.42 E-value=3.8 Score=26.52 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=16.8
Q ss_pred cccCCCCCCCCCCCHHHH-hccCChH
Q 025608 85 SIGCPVTDCGGSLEPEYC-RDILPEE 109 (250)
Q Consensus 85 ~i~CP~~~C~~~l~~~~i-~~~l~~~ 109 (250)
--+||. |+..|...++ .++|.-+
T Consensus 8 ~~~~Pl--CG~~L~W~eLIeQML~~e 31 (95)
T 2k5c_A 8 MAKCPI--CGSPLKWEELIEEMLIIE 31 (95)
T ss_dssp CEECSS--SCCEECHHHHHHHSTTCS
T ss_pred cccCCc--CCCccCHHHHHHHHHhhc
Confidence 358998 9999998764 5666543
No 181
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=48.31 E-value=8.9 Score=28.13 Aligned_cols=29 Identities=17% Similarity=0.472 Sum_probs=21.1
Q ss_pred CccCCC--CCcc-eeccCCCcceEE-eccccccc
Q 025608 201 WNRCPN--CKFY-VEKKDGCSYIRC-RCGHAFCY 230 (250)
Q Consensus 201 ~~~CP~--C~~~-i~k~~GCnhm~C-~C~~~FC~ 230 (250)
-+.||+ ||.- ++-... |..+| +|++.+++
T Consensus 118 ~~~c~~~~cg~g~fma~h~-~r~~cgkc~~t~~~ 150 (152)
T 3u5c_f 118 RRECSNPTCGAGVFLANHK-DRLYCGKCHSVYKV 150 (152)
T ss_dssp SCBCCSTTSCSSSBEEECS-SCEEESSSSSCCEE
T ss_pred cCcCCCccCCCceEecccC-CCcccCCCceEEEe
Confidence 389999 9983 333333 58899 99998875
No 182
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.37 E-value=10 Score=23.29 Aligned_cols=40 Identities=20% Similarity=0.531 Sum_probs=28.4
Q ss_pred eecCCCCCCCCceecCccCccCcccCCcccchhccccCcccCCCCCchh
Q 025608 128 KFYCPFKDCSALLIDDAGEAIRESECPNCHRLFCAQCKVAWHAGIECAD 176 (250)
Q Consensus 128 ~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~ 176 (250)
...|..++|.... ...+.|..|+..||...+.+ ..+.|..
T Consensus 12 ~~~Cs~~~Ck~~~-------ll~f~C~~C~~~FC~~HR~~--e~H~C~~ 51 (63)
T 1x4v_A 12 TNKCERAGCRQRE-------MMKLTCERCSRNFCIKHRHP--LDHDCSG 51 (63)
T ss_dssp CCCCCSTTCCCCC-------SSCCBCSSSCCBCCHHHHST--TSSCCCS
T ss_pred CCCCCccCCCCCC-------ccceECCCCCcccCcccCCc--cCCcCCC
Confidence 3488888887651 23478999999999999864 3345654
No 183
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=46.75 E-value=9.4 Score=20.54 Aligned_cols=25 Identities=24% Similarity=0.676 Sum_probs=17.6
Q ss_pred cCCCCCc---ceeccCCCcceEE-ecccc
Q 025608 203 RCPNCKF---YVEKKDGCSYIRC-RCGHA 227 (250)
Q Consensus 203 ~CP~C~~---~i~k~~GCnhm~C-~C~~~ 227 (250)
.||.|+. .+.+..+=-.+.| .||..
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCc
Confidence 6899988 3455566666778 78864
No 184
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=46.14 E-value=5.7 Score=27.99 Aligned_cols=31 Identities=23% Similarity=0.471 Sum_probs=22.5
Q ss_pred eecCCCCCCCCceecCcc--CccCcccCCcccchh
Q 025608 128 KFYCPFKDCSALLIDDAG--EAIRESECPNCHRLF 160 (250)
Q Consensus 128 ~~~Cp~~~C~~~~~~~~~--~~~~~~~C~~C~~~~ 160 (250)
..+|| .|++++....+ .....+.|+.|++..
T Consensus 4 ~~FCp--~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 4 FRFCR--DCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCBCS--SSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCccc--ccCccCcccccCcCCCCEEECCcCCCee
Confidence 45899 99999987643 334568888888754
No 185
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=45.76 E-value=74 Score=22.91 Aligned_cols=50 Identities=18% Similarity=0.517 Sum_probs=33.6
Q ss_pred ceecccCcccccCCCceecCCCCCcchHHHHHHHHH----HHhhcCcccccCCCCCCCC
Q 025608 41 SFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVD----SKLQENVTSIGCPVTDCGG 95 (250)
Q Consensus 41 ~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~----~~i~~~~~~i~CP~~~C~~ 95 (250)
...|.+|.+ ..+++-...|...||..|+...+. ..|.....+-.||. |..
T Consensus 63 ~d~C~vC~~---GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~--C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAE---GGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYI--CHP 116 (142)
T ss_dssp BCSCSSSCC---CSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTT--TCC
T ss_pred CCeecccCC---CCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeec--ccC
Confidence 345999986 345666779999999999997764 23212223457887 553
No 186
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=45.13 E-value=4.1 Score=32.66 Aligned_cols=44 Identities=5% Similarity=-0.152 Sum_probs=28.6
Q ss_pred CccCCCCCcceeccCCCcceEEeccccccccccccccCCCCCcCCCCCCC
Q 025608 201 WNRCPNCKFYVEKKDGCSYIRCRCGHAFCYHCGVQLSTVSHGYYCPSCNK 250 (250)
Q Consensus 201 ~~~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~~~~h~~~~~~~~~ 250 (250)
.-.||=|..++.. -++=.||+.||..|...|-...+. .||.|+.
T Consensus 208 ~~~c~i~~~~~~d-----Pv~~~~gh~f~~~~i~~~~~~~~~-~cP~~~~ 251 (281)
T 2c2l_A 208 YLCGKISFELMRE-----PCITPSGITYDRKDIEEHLQRVGH-FNPVTRS 251 (281)
T ss_dssp TTBCTTTCSBCSS-----EEECSSCCEEETTHHHHHHHHTCS-SCTTTCC
T ss_pred ccCCcCcCCHhcC-----CeECCCCCEECHHHHHHHHHHCCC-CCcCCCC
Confidence 3678877765431 233368999999998888422222 3999874
No 187
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=44.84 E-value=6.2 Score=28.04 Aligned_cols=27 Identities=26% Similarity=0.668 Sum_probs=20.3
Q ss_pred ecCCCCCCCCceecCccCccCcccCCcccchh
Q 025608 129 FYCPFKDCSALLIDDAGEAIRESECPNCHRLF 160 (250)
Q Consensus 129 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~ 160 (250)
-.|| .|+..+.+.++ ..+.||.|+..|
T Consensus 28 P~CP--~C~seytYeDg---~l~vCPeC~hEW 54 (138)
T 2akl_A 28 PPCP--QCNSEYTYEDG---ALLVCPECAHEW 54 (138)
T ss_dssp CCCT--TTCCCCCEECS---SSEEETTTTEEE
T ss_pred CCCC--CCCCcceEecC---CeEECCcccccc
Confidence 4788 89887777665 447888888875
No 188
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=44.24 E-value=11 Score=23.81 Aligned_cols=27 Identities=19% Similarity=0.444 Sum_probs=21.6
Q ss_pred ccCCCCCcceeccCCCcceEE-eccccc
Q 025608 202 NRCPNCKFYVEKKDGCSYIRC-RCGHAF 228 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C-~C~~~F 228 (250)
-.||.|+..-.|..+-.--.| .|+..|
T Consensus 27 y~C~fCgk~~vkR~a~GIW~C~~C~~~~ 54 (72)
T 3jyw_9 27 YDCSFCGKKTVKRGAAGIWTCSCCKKTV 54 (72)
T ss_dssp BCCSSCCSSCBSBCSSSCBCCSSSCCCC
T ss_pred ccCCCCCCceeEecCCCeEECCCCCCEE
Confidence 789999998888877666678 787765
No 189
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=44.09 E-value=21 Score=25.13 Aligned_cols=34 Identities=26% Similarity=0.728 Sum_probs=25.5
Q ss_pred eecCCCCCCCCceecCccCccCcccCCcccchhccccCcc
Q 025608 128 KFYCPFKDCSALLIDDAGEAIRESECPNCHRLFCAQCKVA 167 (250)
Q Consensus 128 ~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~ 167 (250)
...|. .|+..|... .++..|..||..||..|-..
T Consensus 69 ~~~C~--~C~~~Fs~~----~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCM--ACGKGFSVT----VRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCT--TTCCBCCSS----SCCEECTTTCCEECGGGSCE
T ss_pred CCCCc--CcCCccccc----cccccCCCCCeEEChHHhCC
Confidence 34787 788765543 25678999999999999763
No 190
>2hu9_A MERP, mercuric transport protein periplasmic component; copper chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal transport; 1.78A {Archaeoglobus fulgidus}
Probab=44.05 E-value=12 Score=26.73 Aligned_cols=46 Identities=15% Similarity=0.503 Sum_probs=31.7
Q ss_pred ccCCCCCCC---CCCCHHHHhccCChHHHHHHHHHHHhhccCCCCeecCCCCCCCCceecC
Q 025608 86 IGCPVTDCG---GSLEPEYCRDILPEEAFDKWGKALCESLIPGAQKFYCPFKDCSALLIDD 143 (250)
Q Consensus 86 i~CP~~~C~---~~l~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~ 143 (250)
+.||. |+ ..+....++.+|.++.++ +...+.+.|++|+|.-+.+..
T Consensus 2 ~~CP~--Cg~~G~~V~~~Tvk~ll~~~~~~----------~~~~~y~~C~~~~C~VvYf~~ 50 (130)
T 2hu9_A 2 MRCPE--CSTEGWRVLPLTVGAHVKEGLWS----------KIKGDFYFCSLESCEVVYFNE 50 (130)
T ss_dssp CBCTT--TCCBCEEECHHHHHHHBCGGGGG----------GCCSCEEECCCTTCSEEEECS
T ss_pred CcCCC--CCCcCcCccHHHHHHHhhHHHhc----------cCCCCEEeECCCCCCEEEECC
Confidence 46887 65 357778888888765332 244566699999998766643
No 191
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=43.98 E-value=14 Score=23.99 Aligned_cols=34 Identities=24% Similarity=0.750 Sum_probs=24.9
Q ss_pred eecCCCCCCCCceecCccCccCcccCCcccchhccccCcc
Q 025608 128 KFYCPFKDCSALLIDDAGEAIRESECPNCHRLFCAQCKVA 167 (250)
Q Consensus 128 ~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~ 167 (250)
...|. .|+..|..- .++..|..||..||..|-..
T Consensus 21 ~~~C~--~C~~~Fs~~----~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 21 APACN--GCGCVFTTT----VRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CCBCT--TTCCBCCTT----SCCEECTTTCCEECTGGGCC
T ss_pred CCCCc--CcCCccccc----hhcccccCCCcEEChHHhCC
Confidence 34677 777765443 26678999999999999653
No 192
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.20 E-value=13 Score=24.10 Aligned_cols=33 Identities=30% Similarity=0.644 Sum_probs=24.3
Q ss_pred eecCCCCCCCCceecCccCccCcccCCcccchhccccCc
Q 025608 128 KFYCPFKDCSALLIDDAGEAIRESECPNCHRLFCAQCKV 166 (250)
Q Consensus 128 ~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~ 166 (250)
...|. .|+..|... .++.-|..||..||..|-.
T Consensus 14 ~~~C~--~C~~~F~~~----~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 14 FGNCT--GCSATFSVL----KKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CSSCS--SSCCCCCSS----SCCEECSSSCCEECTTTSC
T ss_pred CCcCc--CcCCccccc----hhhhhhcCCCcEEChhhcC
Confidence 34677 777665432 2667899999999999965
No 193
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=42.52 E-value=5.3 Score=26.71 Aligned_cols=48 Identities=21% Similarity=0.572 Sum_probs=32.0
Q ss_pred CCceecccCcccccCCCceecCCC-CCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHH
Q 025608 39 SRSFVCEICVETKLRNESFSIKGC-SHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPE 100 (250)
Q Consensus 39 ~~~~~C~iC~~~~~~~~~~~~~~C-~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~ 100 (250)
...+.|..|.-.. ...+ .| .|..|..|+...+... =.||. |+..|.-.
T Consensus 26 ~G~~nCKsCWf~~--k~LV---~C~dHYLCl~CLtlmL~~S-------drCpI--C~~pLPtk 74 (99)
T 2ko5_A 26 LGPQFCKSCWFEN--KGLV---ECNNHYLCLNCLTLLLSVS-------NRCPI--CKMPLPTK 74 (99)
T ss_dssp SCCCCCCSSCSCC--SSEE---ECSSCEEEHHHHHHTCSSS-------SEETT--TTEECCCC
T ss_pred cCcccChhhcccc--CCee---eecchhhHHHHHHHHHhhc-------cCCcc--cCCcCCcc
Confidence 4456799997543 3332 45 5999999998877622 36887 77666543
No 194
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=42.51 E-value=11 Score=25.72 Aligned_cols=23 Identities=30% Similarity=1.096 Sum_probs=14.4
Q ss_pred eEE-eccccccccccccccCCCCCcCCCCCC
Q 025608 220 IRC-RCGHAFCYHCGVQLSTVSHGYYCPSCN 249 (250)
Q Consensus 220 m~C-~C~~~FC~~C~~~~~~~~h~~~~~~~~ 249 (250)
..| .||+.| ...++ -. .-||.|+
T Consensus 68 ~~C~~CG~~F----~~~~~-kP--srCP~Ck 91 (105)
T 2gmg_A 68 AQCRKCGFVF----KAEIN-IP--SRCPKCK 91 (105)
T ss_dssp CBBTTTCCBC----CCCSS-CC--SSCSSSC
T ss_pred cChhhCcCee----cccCC-CC--CCCcCCC
Confidence 457 899998 33332 22 3488886
No 195
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=41.06 E-value=23 Score=22.18 Aligned_cols=35 Identities=14% Similarity=0.387 Sum_probs=26.5
Q ss_pred CCceecccCcccccCCCceecCCCCCcchHHHHHH
Q 025608 39 SRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVK 73 (250)
Q Consensus 39 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~ 73 (250)
.+...|.||........++....|.-.|...|+.-
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~ 50 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGI 50 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCC
Confidence 44556999988765556777778998899999853
No 196
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=39.19 E-value=13 Score=30.00 Aligned_cols=45 Identities=20% Similarity=0.267 Sum_probs=32.0
Q ss_pred CccCCCCCcceeccCCCcceEE-eccccccccccccccCCCCCcCCCC--CCC
Q 025608 201 WNRCPNCKFYVEKKDGCSYIRC-RCGHAFCYHCGVQLSTVSHGYYCPS--CNK 250 (250)
Q Consensus 201 ~~~CP~C~~~i~k~~GCnhm~C-~C~~~FC~~C~~~~~~~~h~~~~~~--~~~ 250 (250)
-..||=|..++. +-++- .||+.||-.|...|-.......||. |++
T Consensus 181 el~CPIcl~~f~-----DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~ 228 (267)
T 3htk_C 181 ELTCPITCKPYE-----APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQ 228 (267)
T ss_dssp CSBCTTTSSBCS-----SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSC
T ss_pred eeECcCccCccc-----CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccC
Confidence 378999998774 34666 7888888888777733223357998 874
No 197
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=38.36 E-value=16 Score=19.79 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=20.9
Q ss_pred cCcccCCcccchhccccCc-ccCCCCC
Q 025608 148 IRESECPNCHRLFCAQCKV-AWHAGIE 173 (250)
Q Consensus 148 ~~~~~C~~C~~~~C~~C~~-~~H~~~~ 173 (250)
...+.|..++..+|..|.. ..|.++.
T Consensus 12 ~l~lfC~~d~~~iC~~C~~~~~H~~H~ 38 (42)
T 1fre_A 12 RLKLYCKDDGTLSCVICRDSLKHASHN 38 (42)
T ss_dssp SCCCCCCSSSSSSCCTTSSCSSCTTCC
T ss_pred eeeEEeCCCCeEEeccCCCCCCCCCCc
Confidence 3567899999999999987 6677653
No 198
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=38.00 E-value=18 Score=24.30 Aligned_cols=17 Identities=12% Similarity=0.516 Sum_probs=14.5
Q ss_pred cchHHHHHHHHHHHhhc
Q 025608 65 MYCVDCTVKYVDSKLQE 81 (250)
Q Consensus 65 ~fC~~Cl~~~~~~~i~~ 81 (250)
-||+.||.+|+...-..
T Consensus 42 GFCRNCLskWy~~aA~e 58 (105)
T 2o35_A 42 GFCRNCLSNWYREAAEA 58 (105)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 48999999999987665
No 199
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=37.93 E-value=8.9 Score=24.00 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=11.7
Q ss_pred cCCCccCCCCCccee
Q 025608 198 NQKWNRCPNCKFYVE 212 (250)
Q Consensus 198 ~~~~~~CP~C~~~i~ 212 (250)
....+.||.|+.++.
T Consensus 6 ~~~~~~CP~Cgkp~~ 20 (68)
T 1lv3_A 6 ETITVNCPTCGKTVV 20 (68)
T ss_dssp CCCEEECTTTCCEEE
T ss_pred CCCcCcCCCCCCccc
Confidence 345589999999876
No 200
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=37.57 E-value=23 Score=22.53 Aligned_cols=38 Identities=16% Similarity=0.500 Sum_probs=27.5
Q ss_pred CCceecccCcccccCCCceecCCCCCcchHHHHHH-HHH
Q 025608 39 SRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVK-YVD 76 (250)
Q Consensus 39 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~-~~~ 76 (250)
.....|.+|-...+.......+.|.-.||..|++. +-.
T Consensus 28 ~~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~ 66 (78)
T 2ffw_A 28 AEKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPN 66 (78)
T ss_dssp SCCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCC
T ss_pred CCCccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCC
Confidence 33567999986543444456779999999999996 533
No 201
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.18 E-value=13 Score=24.18 Aligned_cols=27 Identities=30% Similarity=0.762 Sum_probs=21.6
Q ss_pred ccCCCCCcceeccCCCcceEE-eccccc
Q 025608 202 NRCPNCKFYVEKKDGCSYIRC-RCGHAF 228 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C-~C~~~F 228 (250)
-.||.|+..-.|..+-.--.| .|+..|
T Consensus 36 y~CpfCGk~~vkR~a~GIW~C~kCg~~~ 63 (83)
T 3j21_i 36 HTCPVCGRKAVKRISTGIWQCQKCGATF 63 (83)
T ss_dssp BCCSSSCSSCEEEEETTEEEETTTCCEE
T ss_pred cCCCCCCCceeEecCcCeEEcCCCCCEE
Confidence 789999998777766666788 888765
No 202
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=37.03 E-value=26 Score=20.05 Aligned_cols=31 Identities=13% Similarity=0.433 Sum_probs=23.6
Q ss_pred ecccCcccccCCCceecCCCCCcchHHHHHH
Q 025608 43 VCEICVETKLRNESFSIKGCSHMYCVDCTVK 73 (250)
Q Consensus 43 ~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~ 73 (250)
.|.||...-...++.....|...|...|+..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p 32 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRP 32 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCT
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCC
Confidence 4889987655556677778998899999864
No 203
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=36.90 E-value=25 Score=23.02 Aligned_cols=41 Identities=24% Similarity=0.787 Sum_probs=29.3
Q ss_pred CeecCCCCCCCCceecCccCccCcccCCcccchhccccCcccCCCCCchh
Q 025608 127 QKFYCPFKDCSALLIDDAGEAIRESECPNCHRLFCAQCKVAWHAGIECAD 176 (250)
Q Consensus 127 ~~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~ 176 (250)
....|..++|..... ..+.|..|+..||...+.+ ..+.|..
T Consensus 24 ~~~~C~~~~Ck~~~~-------l~f~C~~C~~~FC~~HR~~--e~H~C~~ 64 (86)
T 1wfe_A 24 KSYSCSFKGCTDVEL-------VAVICPYCEKNFCLRHRHQ--SDHDCEK 64 (86)
T ss_dssp CCEECCSTTCCCEES-------SCEECTTTCCEECGGGCST--GGGTCSS
T ss_pred CCCCCCCcCCCCCCc-------cceECCCCCcccccccCCc--cCCCCCC
Confidence 345899888987622 3378999999999999874 2335554
No 204
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=35.94 E-value=18 Score=22.75 Aligned_cols=31 Identities=26% Similarity=0.538 Sum_probs=23.0
Q ss_pred cCCCCCCCCceecCccCccCcccCCcccchhccccCc
Q 025608 130 YCPFKDCSALLIDDAGEAIRESECPNCHRLFCAQCKV 166 (250)
Q Consensus 130 ~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~ 166 (250)
.|. .|+..|..- .++..|..||..||..|-.
T Consensus 13 ~C~--~C~~~F~~~----~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 13 ACM--ICSKKFSLL----NRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp BCT--TTCCBCBTT----BCCEECTTTCCEECGGGSC
T ss_pred ccc--CCCCccCCc----cccccCCCCCEEEcccccC
Confidence 566 677655433 2567899999999999975
No 205
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.43 E-value=23 Score=20.42 Aligned_cols=11 Identities=36% Similarity=0.878 Sum_probs=8.4
Q ss_pred CCCcCCCCCCC
Q 025608 240 SHGYYCPSCNK 250 (250)
Q Consensus 240 ~h~~~~~~~~~ 250 (250)
.-.|.||.||+
T Consensus 10 ~~~~~CPrCn~ 20 (49)
T 2e72_A 10 GGRKICPRCNA 20 (49)
T ss_dssp SSCCCCTTTCC
T ss_pred CCceeCCcccc
Confidence 45677999985
No 206
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=34.36 E-value=22 Score=22.03 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=21.4
Q ss_pred eecCCCCCCCCceecCccCccCcccCCcccchhcc
Q 025608 128 KFYCPFKDCSALLIDDAGEAIRESECPNCHRLFCA 162 (250)
Q Consensus 128 ~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~ 162 (250)
.+.|| +|.+.-..-.. ....+.|..|+...|.
T Consensus 7 ~VKCp--~C~niq~VFSh-A~tvV~C~~Cg~~L~~ 38 (66)
T 1qxf_A 7 KVKCP--DCEHEQVIFDH-PSTIVKCIICGRTVAE 38 (66)
T ss_dssp EEECT--TTCCEEEEESS-CSSCEECSSSCCEEEE
T ss_pred EEECC--CCCCceEEEec-CceEEEcccCCCEEee
Confidence 46899 99875443221 2355889999988873
No 207
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=34.12 E-value=15 Score=29.74 Aligned_cols=13 Identities=23% Similarity=0.695 Sum_probs=11.7
Q ss_pred ccCCCCCcceecc
Q 025608 202 NRCPNCKFYVEKK 214 (250)
Q Consensus 202 ~~CP~C~~~i~k~ 214 (250)
++||.|+.+|++.
T Consensus 243 ~pC~~CG~~I~~~ 255 (271)
T 2xzf_A 243 EKCSRCGAEIQKI 255 (271)
T ss_dssp SBCTTTCCBCEEE
T ss_pred CCCCCCCCEeeEE
Confidence 7899999999876
No 208
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=33.72 E-value=18 Score=24.33 Aligned_cols=17 Identities=24% Similarity=0.636 Sum_probs=14.2
Q ss_pred cchHHHHHHHHHHHhhc
Q 025608 65 MYCVDCTVKYVDSKLQE 81 (250)
Q Consensus 65 ~fC~~Cl~~~~~~~i~~ 81 (250)
-||+.||.+|+.....+
T Consensus 41 GFCRNCLskWy~~aA~~ 57 (104)
T 3fyb_A 41 DFCRNCLAKWLMEAATE 57 (104)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 48999999999977654
No 209
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=33.37 E-value=18 Score=29.21 Aligned_cols=13 Identities=38% Similarity=0.805 Sum_probs=11.7
Q ss_pred ccCCCCCcceecc
Q 025608 202 NRCPNCKFYVEKK 214 (250)
Q Consensus 202 ~~CP~C~~~i~k~ 214 (250)
++||.|+.+|++.
T Consensus 236 ~pC~~CG~~I~~~ 248 (266)
T 1ee8_A 236 LPCPACGRPVERR 248 (266)
T ss_dssp SBCTTTCCBCEEE
T ss_pred CCCCCCCCEeeEE
Confidence 7899999999876
No 210
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=33.24 E-value=33 Score=21.78 Aligned_cols=57 Identities=14% Similarity=0.345 Sum_probs=36.8
Q ss_pred CCCceecccCccccc-CCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCH
Q 025608 38 TSRSFVCEICVETKL-RNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEP 99 (250)
Q Consensus 38 ~~~~~~C~iC~~~~~-~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~ 99 (250)
+.+...| ||..... ...++....|...|...|+.-..... .......||. |......
T Consensus 9 ~~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~--~~~~~~~C~~--C~~~~~~ 66 (79)
T 1wep_A 9 ALVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENA--VDIDIYHCPD--CEAVFGP 66 (79)
T ss_dssp CCCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHH--TTCSBBCCTT--TTTTSCS
T ss_pred cCCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccc--cCCCeEECCC--cccccCC
Confidence 3445568 8987764 45666777899889999986433322 1235789987 7654443
No 211
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.96 E-value=17 Score=21.79 Aligned_cols=8 Identities=25% Similarity=0.567 Sum_probs=3.7
Q ss_pred cccccccc
Q 025608 227 AFCYHCGV 234 (250)
Q Consensus 227 ~FC~~C~~ 234 (250)
.+|.+|+.
T Consensus 13 ~~C~vC~~ 20 (56)
T 2yqq_A 13 VVCVICLE 20 (56)
T ss_dssp CCCTTTCS
T ss_pred CccCcCcC
Confidence 34444444
No 212
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=32.90 E-value=46 Score=20.85 Aligned_cols=32 Identities=19% Similarity=0.455 Sum_probs=24.5
Q ss_pred ceecccCcccccCCCceecCCCCCcchHHHHHH
Q 025608 41 SFVCEICVETKLRNESFSIKGCSHMYCVDCTVK 73 (250)
Q Consensus 41 ~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~ 73 (250)
...| ||........++....|...|...|+.-
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl 47 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGI 47 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSC
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEcc
Confidence 4568 8988776556777778998899999854
No 213
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=32.40 E-value=20 Score=23.61 Aligned_cols=32 Identities=25% Similarity=0.708 Sum_probs=23.8
Q ss_pred cCCCCCCCCceecCccCccCcccCCcccchhccccCcc
Q 025608 130 YCPFKDCSALLIDDAGEAIRESECPNCHRLFCAQCKVA 167 (250)
Q Consensus 130 ~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~ 167 (250)
.|. .|+..|... .++..|..||..+|..|-..
T Consensus 22 ~C~--~C~~~F~~~----~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 22 NCM--NCQVKFTFT----KRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp BCT--TTCCBCCSS----SCCEECTTTCCEECGGGSCE
T ss_pred cCc--CCCCcccch----hhCccccCCCCEECCcccCC
Confidence 576 777655432 25678999999999999764
No 214
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=31.87 E-value=17 Score=29.34 Aligned_cols=13 Identities=15% Similarity=0.370 Sum_probs=11.6
Q ss_pred ccCCCCCcceecc
Q 025608 202 NRCPNCKFYVEKK 214 (250)
Q Consensus 202 ~~CP~C~~~i~k~ 214 (250)
++||.|+.+|++.
T Consensus 241 ~pC~~CG~~I~~~ 253 (268)
T 1k82_A 241 EPCRVCGTPIVAT 253 (268)
T ss_dssp SBCTTTCCBCEEE
T ss_pred CCCCCCCCEeeEE
Confidence 7899999999876
No 215
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=31.67 E-value=89 Score=22.07 Aligned_cols=46 Identities=17% Similarity=0.467 Sum_probs=31.0
Q ss_pred eecccCcccccCCCceecCCCCCcchHHHHHHHH----HHHhhcCcccccCCC
Q 025608 42 FVCEICVETKLRNESFSIKGCSHMYCVDCTVKYV----DSKLQENVTSIGCPV 90 (250)
Q Consensus 42 ~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~----~~~i~~~~~~i~CP~ 90 (250)
..|.+|.+ ..+++-...|...||..|+...+ ...+.+...+-.|+.
T Consensus 58 ~~C~vC~d---GG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~ 107 (129)
T 3ql9_A 58 EQCRWCAE---GGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYI 107 (129)
T ss_dssp SSCTTTCC---CSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTT
T ss_pred CcCeecCC---CCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCC
Confidence 35999986 34555667899999999999874 223322234557876
No 216
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=31.63 E-value=17 Score=25.47 Aligned_cols=42 Identities=24% Similarity=0.582 Sum_probs=26.7
Q ss_pred ecCCCCCCCCceecCccCccCcccCCcccchhccccCcccCC-CCCchh
Q 025608 129 FYCPFKDCSALLIDDAGEAIRESECPNCHRLFCAQCKVAWHA-GIECAD 176 (250)
Q Consensus 129 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~-~~~C~~ 176 (250)
..|. .|+..|... .++..|..||..||..|-...-+ ...|..
T Consensus 20 ~~C~--~C~~~Fs~~----~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~ 62 (120)
T 1y02_A 20 PSCK--SCGAHFANT----ARKQTCLDCKKNFCMTCSSQVGNGPRLCLL 62 (120)
T ss_dssp CCCT--TTCCCCSSG----GGCEECTTTCCEECGGGEEC----CCEEHH
T ss_pred Cccc--CcCCccccc----cccccCCCCCCeeCHHHhCCCCCCceECHH
Confidence 3676 777665432 25678999999999999764322 234544
No 217
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=31.35 E-value=23 Score=27.99 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=16.9
Q ss_pred ccCCCCCc----ceeccCCCcceEE-ecccc
Q 025608 202 NRCPNCKF----YVEKKDGCSYIRC-RCGHA 227 (250)
Q Consensus 202 ~~CP~C~~----~i~k~~GCnhm~C-~C~~~ 227 (250)
.+||.|+- .+- .+| ++.| +||+.
T Consensus 15 ~~CP~Cg~~d~~~~~-~dg--~~~C~~Cg~~ 42 (255)
T 1nui_A 15 IPCDNCGSSDGNSLF-SDG--HTFCYVCEKW 42 (255)
T ss_dssp ECCSSSCCSSCEEEE-TTS--CEEETTTCCE
T ss_pred CcCCCCCCCCCceEe-CCC--CeecccCCCc
Confidence 69999987 444 345 6888 88864
No 218
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=31.30 E-value=17 Score=29.35 Aligned_cols=13 Identities=38% Similarity=0.749 Sum_probs=11.6
Q ss_pred ccCCCCCcceecc
Q 025608 202 NRCPNCKFYVEKK 214 (250)
Q Consensus 202 ~~CP~C~~~i~k~ 214 (250)
++||.|+.+|++.
T Consensus 246 ~pC~~CG~~I~~~ 258 (273)
T 3u6p_A 246 NPCKRCGTPIEKT 258 (273)
T ss_dssp SBCTTTCCBCEEE
T ss_pred CCCCCCCCeEEEE
Confidence 7999999999875
No 219
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=31.18 E-value=20 Score=22.01 Aligned_cols=24 Identities=33% Similarity=0.780 Sum_probs=13.0
Q ss_pred ccCCCCCcceeccCCCcceEE-eccc
Q 025608 202 NRCPNCKFYVEKKDGCSYIRC-RCGH 226 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C-~C~~ 226 (250)
=.|..|+..++-..+ +-|.| .||+
T Consensus 22 Y~C~~Cg~~~~l~~~-~~iRC~~CG~ 46 (63)
T 3h0g_L 22 YLCADCGARNTIQAK-EVIRCRECGH 46 (63)
T ss_dssp CBCSSSCCBCCCCSS-SCCCCSSSCC
T ss_pred EECCCCCCeeecCCC-CceECCCCCc
Confidence 456666665554433 44556 5554
No 220
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=31.17 E-value=35 Score=20.88 Aligned_cols=36 Identities=17% Similarity=0.413 Sum_probs=24.9
Q ss_pred CCceecccCcccccC-CCceecC-CCCCcchHHHHHHH
Q 025608 39 SRSFVCEICVETKLR-NESFSIK-GCSHMYCVDCTVKY 74 (250)
Q Consensus 39 ~~~~~C~iC~~~~~~-~~~~~~~-~C~H~fC~~Cl~~~ 74 (250)
.....|++|..++.+ ..++... .|.-.|...|+.--
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt 43 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMT 43 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCC
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccCCC
Confidence 445579999998754 3455666 88888999998543
No 221
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=30.67 E-value=18 Score=29.03 Aligned_cols=13 Identities=31% Similarity=0.723 Sum_probs=11.3
Q ss_pred ccCCCCCcceecc
Q 025608 202 NRCPNCKFYVEKK 214 (250)
Q Consensus 202 ~~CP~C~~~i~k~ 214 (250)
++||.|+.+|++.
T Consensus 235 ~pC~~CG~~I~~~ 247 (262)
T 1k3x_A 235 EPCERCGSIIEKT 247 (262)
T ss_dssp SBCTTTCCBCEEE
T ss_pred CCCCCCCCEeEEE
Confidence 6899999998876
No 222
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=30.61 E-value=13 Score=27.68 Aligned_cols=76 Identities=17% Similarity=0.343 Sum_probs=42.8
Q ss_pred CCceecccCccccc-CCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHHHHhccCChHHHHHHHHH
Q 025608 39 SRSFVCEICVETKL-RNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPEYCRDILPEEAFDKWGKA 117 (250)
Q Consensus 39 ~~~~~C~iC~~~~~-~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~~l~~~~~~~~~~~ 117 (250)
.....| +|..... ...++....|...|...|+.---.. .+......||. |...-.......-++++.++...+.
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~--~~~~~~~~C~~--C~~~~~~~~~~~~l~~~~~~~l~~i 80 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSE--AELIDEYVCPQ--CQSTEDAMTVLTPLTEKDYEGLKRV 80 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHH--HTTCSSCCCHH--HHHHHHHHTTTSBCCHHHHHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhh--ccCccCeecCC--CcchhccccccccCCHHHHHHHHHH
Confidence 445569 9988653 3456677789989999998532221 12234677886 6532211112233566666655555
Q ss_pred HH
Q 025608 118 LC 119 (250)
Q Consensus 118 ~~ 119 (250)
+.
T Consensus 81 l~ 82 (174)
T 2ri7_A 81 LR 82 (174)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 223
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=29.91 E-value=19 Score=25.00 Aligned_cols=28 Identities=29% Similarity=0.636 Sum_probs=20.9
Q ss_pred CccCCCCCcceeccCCCcceEE-eccccc
Q 025608 201 WNRCPNCKFYVEKKDGCSYIRC-RCGHAF 228 (250)
Q Consensus 201 ~~~CP~C~~~i~k~~GCnhm~C-~C~~~F 228 (250)
-..||.|+..-.+..+-.--.| .|+..|
T Consensus 60 kytCPfCGk~~vKR~avGIW~C~~Cgk~f 88 (116)
T 3cc2_Z 60 DHACPNCGEDRVDRQGTGIWQCSYCDYKF 88 (116)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCCEE
T ss_pred CCcCCCCCCceeEecCceeEECCCCCCEE
Confidence 3799999996666655566778 787766
No 224
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=29.90 E-value=11 Score=21.42 Aligned_cols=26 Identities=23% Similarity=0.521 Sum_probs=21.5
Q ss_pred cCcccCCcccchhccccCcccCCCCC
Q 025608 148 IRESECPNCHRLFCAQCKVAWHAGIE 173 (250)
Q Consensus 148 ~~~~~C~~C~~~~C~~C~~~~H~~~~ 173 (250)
...+.|..|+..+|..|....|.++.
T Consensus 16 ~l~lfC~~~~~~iC~~C~~~~H~~H~ 41 (50)
T 2yvr_A 16 PLVLFCESCDTLTCRDCQLNAHKDHQ 41 (50)
T ss_dssp BCCEEETTTTEEECHHHHHTTTTTCC
T ss_pred CEEEEeCCCCEEEecccCCCcCCCCc
Confidence 35678999999999999877787764
No 225
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=29.90 E-value=30 Score=22.01 Aligned_cols=40 Identities=18% Similarity=0.582 Sum_probs=28.2
Q ss_pred cCCCCCCCCceecCccCccCcccCCcccchhccccCcccCCCCCchhHh
Q 025608 130 YCPFKDCSALLIDDAGEAIRESECPNCHRLFCAQCKVAWHAGIECADFQ 178 (250)
Q Consensus 130 ~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~~~ 178 (250)
.|...+|+.. +..-+.|..|+..||...+.+ ..+.|....
T Consensus 16 ~Cs~~~C~~~-------dflpf~C~~C~~~FC~~HR~~--e~H~C~~~~ 55 (75)
T 1wys_A 16 HCQVQHCRQR-------DFLPFVCDGCSGIFCLEHRSK--DSHGCSEVN 55 (75)
T ss_dssp CCSCTTTCCC-------SCCCEECTTTCCEECSTTCSS--GGGTCCCCS
T ss_pred CcCcccCCCc-------cceeeECcccCcCcCcccCCc--cccCCCCCc
Confidence 7777778765 124478999999999999874 234565443
No 226
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=29.64 E-value=26 Score=22.91 Aligned_cols=33 Identities=30% Similarity=0.611 Sum_probs=24.3
Q ss_pred ecCCCCCCCCceecCccCccCcccCCcccchhccccCcc
Q 025608 129 FYCPFKDCSALLIDDAGEAIRESECPNCHRLFCAQCKVA 167 (250)
Q Consensus 129 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~ 167 (250)
..|. .|+..|... .++..|..||..||..|-..
T Consensus 10 ~~C~--~C~~~F~~~----~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 10 SRCY--GCAVKFTLF----KKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp SBCT--TTCCBCCSS----SCEEECSSSCCEEETTTSCE
T ss_pred CCCc--CcCCcccCc----cccccCCCCCCEEChhHcCC
Confidence 3677 777655443 25678999999999999763
No 227
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=29.54 E-value=18 Score=24.04 Aligned_cols=27 Identities=22% Similarity=0.546 Sum_probs=21.1
Q ss_pred ccCCCCCcceeccCCCcceEE-eccccc
Q 025608 202 NRCPNCKFYVEKKDGCSYIRC-RCGHAF 228 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C-~C~~~F 228 (250)
-.||.|+..-.|..+-.--.| .|+..|
T Consensus 37 y~CpfCgk~~vkR~a~GIW~C~~Cg~~~ 64 (92)
T 3iz5_m 37 YFCEFCGKFAVKRKAVGIWGCKDCGKVK 64 (92)
T ss_dssp BCCTTTCSSCBEEEETTEEECSSSCCEE
T ss_pred ccCcccCCCeeEecCcceEEcCCCCCEE
Confidence 699999998777766666678 787765
No 228
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.07 E-value=29 Score=21.26 Aligned_cols=32 Identities=19% Similarity=0.377 Sum_probs=21.3
Q ss_pred eecCCCCCCCCceecCccCccCcccCCcccchhcc
Q 025608 128 KFYCPFKDCSALLIDDAGEAIRESECPNCHRLFCA 162 (250)
Q Consensus 128 ~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~ 162 (250)
.+.|| +|.+.-..-. .....+.|..|+...|.
T Consensus 15 ~VkCp--~C~~~q~VFS-ha~t~V~C~~Cgt~L~~ 46 (63)
T 3j20_W 15 RVKCI--DCGNEQIVFS-HPATKVRCLICGATLVE 46 (63)
T ss_dssp EEECS--SSCCEEEEES-SCSSCEECSSSCCEEEE
T ss_pred EEECC--CCCCeeEEEe-cCCeEEEccCcCCEEec
Confidence 35899 9987544322 12355889999988773
No 229
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=28.80 E-value=19 Score=21.85 Aligned_cols=14 Identities=36% Similarity=0.933 Sum_probs=10.9
Q ss_pred CCccCCCCCcceec
Q 025608 200 KWNRCPNCKFYVEK 213 (250)
Q Consensus 200 ~~~~CP~C~~~i~k 213 (250)
.++.||+|+++..+
T Consensus 4 ~mr~C~~Cg~YTLk 17 (60)
T 2aus_D 4 RIRKCPKCGRYTLK 17 (60)
T ss_dssp CCEECTTTCCEESS
T ss_pred cceECCCCCCEEcc
Confidence 46899999997653
No 230
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=27.90 E-value=20 Score=24.26 Aligned_cols=27 Identities=22% Similarity=0.572 Sum_probs=21.5
Q ss_pred ccCCCCCcceeccCCCcceEE-eccccc
Q 025608 202 NRCPNCKFYVEKKDGCSYIRC-RCGHAF 228 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C-~C~~~F 228 (250)
-.||.|+..-.|..+-.--.| .|+..|
T Consensus 37 y~CpfCgk~~vKR~a~GIW~C~kCg~~~ 64 (103)
T 4a17_Y 37 YGCPFCGKVAVKRAAVGIWKCKPCKKII 64 (103)
T ss_dssp EECTTTCCEEEEEEETTEEEETTTTEEE
T ss_pred CCCCCCCCceeeecCcceEEcCCCCCEE
Confidence 789999998777777666678 887765
No 231
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=27.86 E-value=25 Score=21.20 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=24.2
Q ss_pred CCceecccCccccc-CCCceecCCCCCcchHHHHHH
Q 025608 39 SRSFVCEICVETKL-RNESFSIKGCSHMYCVDCTVK 73 (250)
Q Consensus 39 ~~~~~C~iC~~~~~-~~~~~~~~~C~H~fC~~Cl~~ 73 (250)
.+...|++|..... ...++....|...|...|+.-
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl 39 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKI 39 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTC
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCc
Confidence 34456999988764 345566778887788888743
No 232
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=27.66 E-value=41 Score=24.79 Aligned_cols=34 Identities=26% Similarity=0.661 Sum_probs=23.3
Q ss_pred ceecccCcccccCCCceecC--CCCCcchHHHHHHHHHH
Q 025608 41 SFVCEICVETKLRNESFSIK--GCSHMYCVDCTVKYVDS 77 (250)
Q Consensus 41 ~~~C~iC~~~~~~~~~~~~~--~C~H~fC~~Cl~~~~~~ 77 (250)
...|.+|.+. .+++... +|...||.+|+...+..
T Consensus 79 ~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 79 QSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp BSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred cceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 3457777752 3444443 68889999999987654
No 233
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=26.71 E-value=22 Score=19.50 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=11.0
Q ss_pred CCCccCCCCCcceec
Q 025608 199 QKWNRCPNCKFYVEK 213 (250)
Q Consensus 199 ~~~~~CP~C~~~i~k 213 (250)
.....||+|+..|..
T Consensus 7 ~~~~~C~~C~~~i~~ 21 (39)
T 2i5o_A 7 EDQVPCEKCGSLVPV 21 (39)
T ss_dssp CCEEECTTTCCEEEG
T ss_pred CCCcccccccCcCCc
Confidence 344689999998764
No 234
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=26.65 E-value=20 Score=23.84 Aligned_cols=27 Identities=19% Similarity=0.444 Sum_probs=20.5
Q ss_pred ccCCCCCcceeccCCCcceEE-eccccc
Q 025608 202 NRCPNCKFYVEKKDGCSYIRC-RCGHAF 228 (250)
Q Consensus 202 ~~CP~C~~~i~k~~GCnhm~C-~C~~~F 228 (250)
-.||.|+..-.|..+-.--.| .|+..|
T Consensus 37 y~CpfCgk~~vkR~a~GIW~C~~C~~~~ 64 (92)
T 3izc_m 37 YDCSFCGKKTVKRGAAGIWTCSCCKKTV 64 (92)
T ss_dssp CCCSSSCSSCCEEEETTEEECTTTCCEE
T ss_pred CcCCCCCCceeeecccceEEcCCCCCEE
Confidence 789999997777766556677 777665
No 235
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=26.54 E-value=43 Score=21.63 Aligned_cols=32 Identities=22% Similarity=0.616 Sum_probs=21.3
Q ss_pred eecCCCCCCCCceecCccCccCcccCCcccchhcc
Q 025608 128 KFYCPFKDCSALLIDDAGEAIRESECPNCHRLFCA 162 (250)
Q Consensus 128 ~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~ 162 (250)
.+.|| +|.+.-..-.. ....+.|..|+...|.
T Consensus 34 ~VkCp--~C~~~q~VFSh-a~t~V~C~~Cg~~L~~ 65 (82)
T 3u5c_b 34 DVKCP--GCLNITTVFSH-AQTAVTCESCSTILCT 65 (82)
T ss_dssp EEECT--TSCSCEEEESB-CSSCCCCSSSCCCCEE
T ss_pred EEECC--CCCCeeEEEec-CCeEEEccccCCEEec
Confidence 35899 99875443221 1355889999988874
No 236
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=26.34 E-value=1.4e+02 Score=19.52 Aligned_cols=91 Identities=16% Similarity=0.314 Sum_probs=48.0
Q ss_pred CCceecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCCCCCHHHHhccCChHHHHHHHHHH
Q 025608 39 SRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGGSLEPEYCRDILPEEAFDKWGKAL 118 (250)
Q Consensus 39 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~~l~~~~i~~~l~~~~~~~~~~~~ 118 (250)
...+.|++|...+... .=|..++... .+..++.|+. |+..+.... .+.+-.
T Consensus 5 ~~~~~C~~C~~~f~~~--------------~~l~~H~~~h--~~~~~~~C~~--C~~~f~~~~--------~l~~H~--- 55 (124)
T 2dlq_A 5 SSGVECPTCHKKFLSK--------------YYLKVHNRKH--TGEKPFECPK--CGKCYFRKE--------NLLEHE--- 55 (124)
T ss_dssp CSSCCCTTTCCCCSSH--------------HHHHHHHHHH--SSCCSCBCTT--TCCBCSSHH--------HHHHHH---
T ss_pred CCCCCCCCCCCcCCCH--------------HHHHHHHHhC--CCCCCeECCC--CCchhcCHH--------HHHHHH---
Confidence 4567899997665432 3345555433 3446788987 886654321 111111
Q ss_pred Hhh-ccCCCCeecCCCCCCCCceecCc--------cCccCcccCCcccchh
Q 025608 119 CES-LIPGAQKFYCPFKDCSALLIDDA--------GEAIRESECPNCHRLF 160 (250)
Q Consensus 119 ~~~-~~~~~~~~~Cp~~~C~~~~~~~~--------~~~~~~~~C~~C~~~~ 160 (250)
... .-.....+.|+ .|+..+.... ......+.|+.|+..|
T Consensus 56 ~~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 104 (124)
T 2dlq_A 56 ARNCMNRSEQVFTCS--VCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQF 104 (124)
T ss_dssp HHCCCCSCCCCEECS--SSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEE
T ss_pred hhhhcCCCCCCeECC--CCCCccCCHHHHHHHHHHcCCCCCccCCCccchh
Confidence 111 11234457888 7887766431 0112446777777654
No 237
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=26.20 E-value=51 Score=23.47 Aligned_cols=37 Identities=30% Similarity=0.652 Sum_probs=29.4
Q ss_pred CCCccCCCCCcceeccCCCcceEE-eccccccccccccc
Q 025608 199 QKWNRCPNCKFYVEKKDGCSYIRC-RCGHAFCYHCGVQL 236 (250)
Q Consensus 199 ~~~~~CP~C~~~i~k~~GCnhm~C-~C~~~FC~~C~~~~ 236 (250)
.+...|..|..+.--.++.. ..| .|++.+|-.|+...
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g-~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSAS-VVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCE-EECTTTCCEEETTSEEEC
T ss_pred CCCccccccCCCcccccCCC-CCCCCCCcccccccCCcc
Confidence 45588999999886555655 778 99999999998866
No 238
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=26.02 E-value=37 Score=21.47 Aligned_cols=30 Identities=33% Similarity=0.678 Sum_probs=20.6
Q ss_pred CCCccCCCCCcceeccCCCcceEE-eccccc
Q 025608 199 QKWNRCPNCKFYVEKKDGCSYIRC-RCGHAF 228 (250)
Q Consensus 199 ~~~~~CP~C~~~i~k~~GCnhm~C-~C~~~F 228 (250)
..-..||.|+..-.|..+=.--.| .|+..|
T Consensus 25 ~~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~ 55 (73)
T 1ffk_W 25 KKKYKCPVCGFPKLKRASTSIWVCGHCGYKI 55 (73)
T ss_pred ccCccCCCCCCceeEEEEeEEEECCCCCcEE
Confidence 344799999997666655555667 676654
No 239
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=25.42 E-value=27 Score=27.06 Aligned_cols=32 Identities=31% Similarity=0.818 Sum_probs=22.8
Q ss_pred cCCCCCCCCceecCccCccCcccCCcccchhccccCcc
Q 025608 130 YCPFKDCSALLIDDAGEAIRESECPNCHRLFCAQCKVA 167 (250)
Q Consensus 130 ~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~ 167 (250)
.|+ .|+..|... .++..|..||..||..|-..
T Consensus 163 ~C~--~C~~~F~~~----~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 163 VCH--RCRVEFTFT----NRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp BCT--TTCCBCCSS----SCCEECTTTCCEECSTTSCE
T ss_pred ccC--CCCCccCCc----ccccccCCcCCEEChHHhCC
Confidence 465 666554432 26678999999999999763
No 240
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.15 E-value=1.1e+02 Score=18.97 Aligned_cols=39 Identities=18% Similarity=0.512 Sum_probs=26.3
Q ss_pred CCCceecccCcccccCCCceecCCCCCcchHHHHHHHHH
Q 025608 38 TSRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVD 76 (250)
Q Consensus 38 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~ 76 (250)
-..-|.|..|...+.....+.+..=+..+|..|..+.+.
T Consensus 38 H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~ 76 (81)
T 1x6a_A 38 HPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVS 76 (81)
T ss_dssp CTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHC
T ss_pred ccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhc
Confidence 355678999988876433343224467899999877654
No 241
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=25.09 E-value=46 Score=21.71 Aligned_cols=33 Identities=18% Similarity=0.532 Sum_probs=22.2
Q ss_pred eecCCCCCCCCceecCccCccCcccCCcccchhccc
Q 025608 128 KFYCPFKDCSALLIDDAGEAIRESECPNCHRLFCAQ 163 (250)
Q Consensus 128 ~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~~ 163 (250)
.+.|| +|.++-..-.. ....+.|..|+...|.-
T Consensus 36 ~VkCp--~C~~~~~VFSh-A~t~V~C~~CgtvL~~P 68 (86)
T 3iz6_X 36 DVKCQ--GCFNITTVFSH-SQTVVVCPGCQTVLCQP 68 (86)
T ss_dssp EEECT--TTCCEEEEETT-CSSCCCCSSSCCCCSCC
T ss_pred EEECC--CCCCeeEEEec-CCcEEEccCCCCEeecC
Confidence 36999 99975443321 23558899999988743
No 242
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=24.77 E-value=75 Score=20.01 Aligned_cols=35 Identities=14% Similarity=0.407 Sum_probs=25.4
Q ss_pred CCCCceecccCcccccCCCceecC--CCCCcchHHHHH
Q 025608 37 ETSRSFVCEICVETKLRNESFSIK--GCSHMYCVDCTV 72 (250)
Q Consensus 37 ~~~~~~~C~iC~~~~~~~~~~~~~--~C~H~fC~~Cl~ 72 (250)
.......| ||-.......++... .|...|...|+.
T Consensus 12 ~~~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVg 48 (78)
T 1wew_A 12 QPEIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVI 48 (78)
T ss_dssp SCCCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHS
T ss_pred CCCCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEc
Confidence 33456679 798875556666666 788889899884
No 243
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=24.45 E-value=47 Score=20.05 Aligned_cols=29 Identities=24% Similarity=0.651 Sum_probs=18.5
Q ss_pred ccCCCCeecCCCCCCCCceecCccCccCcccCCcccch
Q 025608 122 LIPGAQKFYCPFKDCSALLIDDAGEAIRESECPNCHRL 159 (250)
Q Consensus 122 ~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~ 159 (250)
.+.......|| .|+.+.. +...|+.||++
T Consensus 24 kl~~p~l~~c~--~cGe~~~-------~H~vc~~CG~Y 52 (60)
T 3v2d_5 24 ALTPPTLVPCP--ECKAMKP-------PHTVCPECGYY 52 (60)
T ss_dssp CCCCCCCEECT--TTCCEEC-------TTSCCTTTCEE
T ss_pred cccCCceeECC--CCCCeec-------ceEEcCCCCcC
Confidence 34455667898 7877533 33558888854
No 244
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=24.39 E-value=28 Score=25.06 Aligned_cols=28 Identities=32% Similarity=0.796 Sum_probs=18.7
Q ss_pred CCccCCCCCc---ceeccCCCcceEE-ecccc
Q 025608 200 KWNRCPNCKF---YVEKKDGCSYIRC-RCGHA 227 (250)
Q Consensus 200 ~~~~CP~C~~---~i~k~~GCnhm~C-~C~~~ 227 (250)
....||.|+. .+.+.++=-.+.| .||..
T Consensus 102 ~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~ 133 (139)
T 3cw2_K 102 AYVECSTCKSLDTILKKEKKSWYIVCLACGAQ 133 (139)
T ss_dssp CCSSCCSSSSSCCCSCSSCSTTTSSCCC----
T ss_pred HeeECCCCCCcCcEEEEeCCeEEEEecCCCCC
Confidence 4589999998 4566677777888 88864
No 245
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.30 E-value=20 Score=20.97 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=14.4
Q ss_pred CCccCCCCCcceeccCCCcceEE-ecccc
Q 025608 200 KWNRCPNCKFYVEKKDGCSYIRC-RCGHA 227 (250)
Q Consensus 200 ~~~~CP~C~~~i~k~~GCnhm~C-~C~~~ 227 (250)
..+.||.|+..+ +=.--.| +||+.
T Consensus 13 ~k~iCpkC~a~~----~~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGATN----PWGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCEE----CTTCSSCSSSSSC
T ss_pred CCccCCCCCCcC----CCCceecCCCCCc
Confidence 347899998872 2223445 66654
No 246
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=24.03 E-value=16 Score=30.05 Aligned_cols=31 Identities=19% Similarity=0.687 Sum_probs=23.0
Q ss_pred cCCCccCCCCCcceeccC-CCcceEE-eccccc
Q 025608 198 NQKWNRCPNCKFYVEKKD-GCSYIRC-RCGHAF 228 (250)
Q Consensus 198 ~~~~~~CP~C~~~i~k~~-GCnhm~C-~C~~~F 228 (250)
+..|.+||+|+..+-+.+ .=|...| .|++++
T Consensus 21 ~~l~~kc~~~~~~~~~~~l~~~~~v~~~~~~~~ 53 (304)
T 2f9y_B 21 EGVWTKCDSCGQVLYRAELERNLEVCPKCDHHM 53 (304)
T ss_dssp --CEECCTTTCCCEETTHHHHTTTBCTTTCCBC
T ss_pred HHHHHhhhhccchhhHHHHHHHhCCCCCCCCCC
Confidence 355789999999888774 2277888 788876
No 247
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=23.87 E-value=25 Score=22.64 Aligned_cols=21 Identities=24% Similarity=0.581 Sum_probs=10.3
Q ss_pred cccccccccCCCCCc--CCCCCC
Q 025608 229 CYHCGVQLSTVSHGY--YCPSCN 249 (250)
Q Consensus 229 C~~C~~~~~~~~h~~--~~~~~~ 249 (250)
|--|++......|.+ -||+|+
T Consensus 40 CnDC~~~s~v~~h~lg~kC~~C~ 62 (79)
T 2k2d_A 40 CNDCNGRSTVQFHILGMKCKICE 62 (79)
T ss_dssp ESSSCCEEEEECCTTCCCCTTTS
T ss_pred CCCCCCCccCCceeecccCcCCC
Confidence 333444443334444 477775
No 248
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=23.70 E-value=31 Score=24.93 Aligned_cols=10 Identities=20% Similarity=0.773 Sum_probs=5.8
Q ss_pred ccCCCCCcce
Q 025608 202 NRCPNCKFYV 211 (250)
Q Consensus 202 ~~CP~C~~~i 211 (250)
..||+|++..
T Consensus 72 ~~C~~Cg~~f 81 (143)
T 2dkt_A 72 QTCEDCSTLF 81 (143)
T ss_dssp SBCSSSCCBS
T ss_pred CcCCCCCccc
Confidence 3566666554
No 249
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=23.63 E-value=39 Score=21.78 Aligned_cols=31 Identities=19% Similarity=0.571 Sum_probs=21.1
Q ss_pred ecCCCCCCCCceecCccCccCcccCCcccchhcc
Q 025608 129 FYCPFKDCSALLIDDAGEAIRESECPNCHRLFCA 162 (250)
Q Consensus 129 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~ 162 (250)
+.|| +|...-..-.. ....+.|..|+...|.
T Consensus 33 VkCp--~C~n~q~VFSh-A~t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 33 VKCA--QCQNIQMIFSN-AQSTIICEKCSAILCK 63 (81)
T ss_dssp EECS--SSCCEEEEETT-CSSCEECSSSCCEEEE
T ss_pred eECC--CCCCeeEEEec-CccEEEccCCCCEEee
Confidence 4899 99875443321 2355889999988774
No 250
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=23.47 E-value=9.6 Score=18.68 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=15.4
Q ss_pred ccccCCCCCCCCCCCHHHHhccC
Q 025608 84 TSIGCPVTDCGGSLEPEYCRDIL 106 (250)
Q Consensus 84 ~~i~CP~~~C~~~l~~~~i~~~l 106 (250)
+.+.||. |.+.++...|...|
T Consensus 5 f~vqcpv--cqq~mpaahin~hl 25 (29)
T 3vhs_A 5 FQVQCPV--CQQMMPAAHINSHL 25 (29)
T ss_dssp CEEECTT--TCCEEEGGGHHHHH
T ss_pred eeeeChH--HHHhCcHHHHHHHH
Confidence 5688998 88887777666544
No 251
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=22.72 E-value=1e+02 Score=20.12 Aligned_cols=31 Identities=16% Similarity=0.589 Sum_probs=24.6
Q ss_pred ecccCcccccCCCceecCCCCCcchHHHHHHH
Q 025608 43 VCEICVETKLRNESFSIKGCSHMYCVDCTVKY 74 (250)
Q Consensus 43 ~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~ 74 (250)
.|.||- .++.+..+...-|+-.|...||++.
T Consensus 17 ~C~VC~-~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 17 MCDVCE-VWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCTTTC-CCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred ccCccc-cccccceeccccccccccHhhcccc
Confidence 599985 3456666777788999999999985
No 252
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Probab=22.62 E-value=44 Score=21.45 Aligned_cols=27 Identities=33% Similarity=0.862 Sum_probs=19.1
Q ss_pred cCCCCCcceecc---------CCCcceEE-ecccccc
Q 025608 203 RCPNCKFYVEKK---------DGCSYIRC-RCGHAFC 229 (250)
Q Consensus 203 ~CP~C~~~i~k~---------~GCnhm~C-~C~~~FC 229 (250)
.|-.|+-.+.|. .||..++| -|+..|=
T Consensus 12 ~C~~Cgd~lKK~kv~~H~~~Cr~~~~~SCIDC~~~F~ 48 (79)
T 1wjv_A 12 TCNACGESVKKIQVEKHVSNCRNCECLSCIDCGKDFW 48 (79)
T ss_dssp EESSSCCEEETTHHHHHHHHCTTCCEEEETTTTEEEE
T ss_pred EcCCCCCeeecccchhHHhhCCCCCcEEecccCCeeC
Confidence 455666666663 47778899 8988884
No 253
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=22.57 E-value=23 Score=21.38 Aligned_cols=36 Identities=31% Similarity=0.631 Sum_probs=26.0
Q ss_pred CccCCCCCcceeccCCCcceEEecccccccccccccc
Q 025608 201 WNRCPNCKFYVEKKDGCSYIRCRCGHAFCYHCGVQLS 237 (250)
Q Consensus 201 ~~~CP~C~~~i~k~~GCnhm~C~C~~~FC~~C~~~~~ 237 (250)
...|+-|... .=-+|+-|.=-.|+.-||..||..+.
T Consensus 9 ~~~C~iC~KT-KFADG~Gh~C~yCk~r~CaRCGg~v~ 44 (62)
T 2a20_A 9 APTCGICHKT-KFADGCGHNCSYCQTKFCARCGGRVS 44 (62)
T ss_dssp CCCCSSSSCS-CCCSSCCEEBTTTCCEECTTSEEEEE
T ss_pred cchhhhhccc-eeccCCCccccccCCeeecccCCEee
Confidence 3567777654 22378888633999999999998873
No 254
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=22.50 E-value=60 Score=19.57 Aligned_cols=28 Identities=25% Similarity=0.670 Sum_probs=18.2
Q ss_pred cCCCCeecCCCCCCCCceecCccCccCcccCCcccch
Q 025608 123 IPGAQKFYCPFKDCSALLIDDAGEAIRESECPNCHRL 159 (250)
Q Consensus 123 ~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~ 159 (250)
+.......|| .|+... .+...|+.||++
T Consensus 25 l~~p~l~~c~--~cG~~~-------~pH~vc~~CG~Y 52 (60)
T 2zjr_Z 25 LTAPNLTECP--QCHGKK-------LSHHICPNCGYY 52 (60)
T ss_dssp CCCCCCEECT--TTCCEE-------CTTBCCTTTCBS
T ss_pred ccCCCceECC--CCCCEe-------CCceEcCCCCcC
Confidence 3445667898 787763 234568888865
No 255
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=22.47 E-value=86 Score=19.15 Aligned_cols=46 Identities=20% Similarity=0.489 Sum_probs=30.0
Q ss_pred eecccCcccccCCCceecCCCCCcchHHHHHHHHHHHhhcCcccccCCCCCCCC
Q 025608 42 FVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVDSKLQENVTSIGCPVTDCGG 95 (250)
Q Consensus 42 ~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~i~CP~~~C~~ 95 (250)
..|.||.+. .++.....|...|...|+.--+.. +- ...-.||. |..
T Consensus 13 ~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~-~P--~g~W~C~~--C~~ 58 (66)
T 2lri_C 13 ARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTS-RP--GTGLRCRS--CSG 58 (66)
T ss_dssp CCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCC-CC--SSSCCCTT--TTT
T ss_pred CCcCCCCCC---CeEEECCCCCCceecccCCCccCc-CC--CCCEECcc--ccC
Confidence 459999753 456667789999999998644432 11 23457876 543
No 256
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=22.02 E-value=1.1e+02 Score=22.84 Aligned_cols=9 Identities=33% Similarity=1.102 Sum_probs=6.0
Q ss_pred eecCCCCCCCC
Q 025608 128 KFYCPFKDCSA 138 (250)
Q Consensus 128 ~~~Cp~~~C~~ 138 (250)
.+.|| .|++
T Consensus 137 ~~~Cp--~C~~ 145 (178)
T 3po3_S 137 RFTCG--KCKE 145 (178)
T ss_dssp SSCCS--SSCC
T ss_pred CcCCC--CCCC
Confidence 35899 6764
No 257
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=21.92 E-value=53 Score=18.63 Aligned_cols=30 Identities=20% Similarity=0.373 Sum_probs=18.0
Q ss_pred eecCCCCCCCCceecCccC------ccCcccCCcccch
Q 025608 128 KFYCPFKDCSALLIDDAGE------AIRESECPNCHRL 159 (250)
Q Consensus 128 ~~~Cp~~~C~~~~~~~~~~------~~~~~~C~~C~~~ 159 (250)
...|+ .|+.+.....+. ....+.||.|+..
T Consensus 4 ~y~C~--vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 4 KYVCN--VCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp CEEET--TTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred EEECC--CCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 34677 788776543222 1234689988853
No 258
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=21.49 E-value=37 Score=26.49 Aligned_cols=32 Identities=25% Similarity=0.726 Sum_probs=22.3
Q ss_pred cCCCCCCCCceecCccCccCcccCCcccchhccccCcc
Q 025608 130 YCPFKDCSALLIDDAGEAIRESECPNCHRLFCAQCKVA 167 (250)
Q Consensus 130 ~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~ 167 (250)
.|. .|+..|... .++..|..||..||..|-..
T Consensus 166 ~C~--~C~~~F~~~----~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 166 ECH--RCRVQFGVM----TRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp BCT--TTCCBCBTT----BCCEECTTTCCEECTTTCCE
T ss_pred CCc--CcCCCCCcc----ccccccCCCcCEeChhhcCC
Confidence 455 565544432 25678999999999999763
No 259
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=20.77 E-value=43 Score=26.45 Aligned_cols=35 Identities=23% Similarity=0.591 Sum_probs=20.3
Q ss_pred eecCCCCCCCC--ceecCccCccCcccCCcccchhcccc
Q 025608 128 KFYCPFKDCSA--LLIDDAGEAIRESECPNCHRLFCAQC 164 (250)
Q Consensus 128 ~~~Cp~~~C~~--~~~~~~~~~~~~~~C~~C~~~~C~~C 164 (250)
..+|| .|+. .-...+...+..+.|+.|+..|=++=
T Consensus 34 n~yCP--nCG~~~l~~f~nN~PVaDF~C~~C~EeyELKS 70 (257)
T 4esj_A 34 QSYCP--NCGNNPLNHFENNRPVADFYCNHCSEEFELKS 70 (257)
T ss_dssp HCCCT--TTCCSSCEEC----CCCEEECTTTCCEEEEEE
T ss_pred CCcCC--CCCChhhhhccCCCcccccccCCcchhheecc
Confidence 35899 7776 33444444556688888887664333
No 260
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=20.71 E-value=95 Score=19.25 Aligned_cols=34 Identities=21% Similarity=0.403 Sum_probs=23.2
Q ss_pred CCceecccCcccc--cCCCceecCCCCCcchHHHHH
Q 025608 39 SRSFVCEICVETK--LRNESFSIKGCSHMYCVDCTV 72 (250)
Q Consensus 39 ~~~~~C~iC~~~~--~~~~~~~~~~C~H~fC~~Cl~ 72 (250)
.....|.||.+.. ....+.....|.-.|...|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~ 49 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYG 49 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCC
Confidence 3344699998653 345666667888778888875
No 261
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.69 E-value=75 Score=18.96 Aligned_cols=36 Identities=28% Similarity=0.605 Sum_probs=24.6
Q ss_pred CCceecccCcccccCCCceecCCCCCcchHHHHHHHHH
Q 025608 39 SRSFVCEICVETKLRNESFSIKGCSHMYCVDCTVKYVD 76 (250)
Q Consensus 39 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~ 76 (250)
..-|.|..|...+....++. .=+..+|..|..+.+.
T Consensus 29 ~~CF~C~~C~~~L~~~~~~~--~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 29 ADCFVCVTCSKKLAGQRFTA--VEDQYYCVDCYKNFVS 64 (69)
T ss_dssp TTTTBCTTTCCBCTTSCEEE--CSSCEEEHHHHHHHHT
T ss_pred cCcCEECCCCCCCCCCccEe--ECCEEECHHHhHHHhc
Confidence 45578999988876544332 3468899999876543
No 262
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=20.15 E-value=41 Score=20.75 Aligned_cols=36 Identities=11% Similarity=0.287 Sum_probs=24.6
Q ss_pred cCCCCceecccCcccccCCCceecCCCCCcchHHHHH
Q 025608 36 SETSRSFVCEICVETKLRNESFSIKGCSHMYCVDCTV 72 (250)
Q Consensus 36 ~~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~ 72 (250)
..+.+...| ||........++....|...|...|+.
T Consensus 14 ~~~~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvg 49 (68)
T 3o70_A 14 LYFQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAK 49 (68)
T ss_dssp CTTTTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTT
T ss_pred CCCCCceEe-ECCCcCCCCCEEECCCCCccccccccC
Confidence 334555668 898776655567777788777777774
Done!