BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025612
(250 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225434034|ref|XP_002272799.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Vitis vinifera]
Length = 237
Score = 329 bits (843), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 162/242 (66%), Positives = 190/242 (78%), Gaps = 6/242 (2%)
Query: 10 MGCLKFHFSQMGFHQRPQISLPSGKKIQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHA 69
MG LKF Q+ F Q PQ P KI CGLR +KP+WRSRVLS+EAIQ V +
Sbjct: 1 MGSLKFQLPQLRFPQNPQTHKPQFPKI-----ACGLRGGPRKPLWRSRVLSTEAIQVVQS 55
Query: 70 MKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLS 129
+KLAKSS KLEE F SR+ RLLK+DLLDTL EL+RQ ELDL LKVF F+RKEVWYKPDLS
Sbjct: 56 LKLAKSSIKLEEVFSSRVSRLLKSDLLDTLAELQRQGELDLTLKVFEFIRKEVWYKPDLS 115
Query: 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM 189
LYSDMI++LGK K I MAE LF ELKKEGL+PDTRVYTEMIG YLQVGM +KAME Y M
Sbjct: 116 LYSDMIMILGKKKLIEMAEGLFSELKKEGLEPDTRVYTEMIGAYLQVGMTEKAMEMYGLM 175
Query: 190 KASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVYQKH-RKTQVD 248
KASGC P KLT TILIRNLENAGEEEL A V+++C +YV++P++FLEE+ +K+ ++ V+
Sbjct: 176 KASGCAPDKLTLTILIRNLENAGEEELAAGVKKECEEYVDYPKKFLEEIEKKYPKRRSVN 235
Query: 249 LV 250
LV
Sbjct: 236 LV 237
>gi|296084249|emb|CBI24637.3| unnamed protein product [Vitis vinifera]
Length = 242
Score = 329 bits (843), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 162/242 (66%), Positives = 190/242 (78%), Gaps = 6/242 (2%)
Query: 10 MGCLKFHFSQMGFHQRPQISLPSGKKIQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHA 69
MG LKF Q+ F Q PQ P KI CGLR +KP+WRSRVLS+EAIQ V +
Sbjct: 6 MGSLKFQLPQLRFPQNPQTHKPQFPKI-----ACGLRGGPRKPLWRSRVLSTEAIQVVQS 60
Query: 70 MKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLS 129
+KLAKSS KLEE F SR+ RLLK+DLLDTL EL+RQ ELDL LKVF F+RKEVWYKPDLS
Sbjct: 61 LKLAKSSIKLEEVFSSRVSRLLKSDLLDTLAELQRQGELDLTLKVFEFIRKEVWYKPDLS 120
Query: 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM 189
LYSDMI++LGK K I MAE LF ELKKEGL+PDTRVYTEMIG YLQVGM +KAME Y M
Sbjct: 121 LYSDMIMILGKKKLIEMAEGLFSELKKEGLEPDTRVYTEMIGAYLQVGMTEKAMEMYGLM 180
Query: 190 KASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVYQKH-RKTQVD 248
KASGC P KLT TILIRNLENAGEEEL A V+++C +YV++P++FLEE+ +K+ ++ V+
Sbjct: 181 KASGCAPDKLTLTILIRNLENAGEEELAAGVKKECEEYVDYPKKFLEEIEKKYPKRRSVN 240
Query: 249 LV 250
LV
Sbjct: 241 LV 242
>gi|147788707|emb|CAN65295.1| hypothetical protein VITISV_017782 [Vitis vinifera]
Length = 303
Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 159/233 (68%), Positives = 184/233 (78%), Gaps = 5/233 (2%)
Query: 10 MGCLKFHFSQMGFHQRPQISLPSGKKIQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHA 69
MG LKF Q+ F Q PQ P KI CGLR +KP+WRSRVLS+EAIQ V +
Sbjct: 1 MGSLKFQLPQLRFPQNPQTHKPQFPKI-----ACGLRGGPRKPLWRSRVLSTEAIQVVQS 55
Query: 70 MKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLS 129
+KLAKSS KLEE F SR+ RLLK+DLLDTL EL+RQ ELDL LKVF F+RKEVWYKPDLS
Sbjct: 56 LKLAKSSIKLEEVFSSRVSRLLKSDLLDTLAELQRQGELDLTLKVFEFIRKEVWYKPDLS 115
Query: 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM 189
LYSDMI++LGK K I MAE LF ELKKEGL+PDTRVYTEMIG YLQVGM +KAME Y M
Sbjct: 116 LYSDMIMILGKKKLIEMAEGLFSELKKEGLEPDTRVYTEMIGAYLQVGMTEKAMEMYGLM 175
Query: 190 KASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVYQKH 242
KASGC P KLT TILIRNLENAGEEEL A V+++C +YV++P++FLEE+ +K+
Sbjct: 176 KASGCAPDKLTLTILIRNLENAGEEELAAGVKKECEEYVDYPKKFLEEIEKKY 228
>gi|224092960|ref|XP_002309772.1| predicted protein [Populus trichocarpa]
gi|222852675|gb|EEE90222.1| predicted protein [Populus trichocarpa]
Length = 241
Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 143/237 (60%), Positives = 180/237 (75%), Gaps = 12/237 (5%)
Query: 10 MGCLKFHFSQMGFH---QRPQISLPSGKKIQALTVTCGLRDANKKPMWRSRVLSSEAIQA 66
MG LKF Q+GFH Q+P + S +TC LR + P+WR++ LS+EAIQ
Sbjct: 1 MGSLKFQIPQLGFHKTLQKPHLPRSS-------VITCSLRGKPRPPLWRAKRLSTEAIQV 53
Query: 67 VHAMKLAKSSS-KLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYK 125
+ ++KLA+SS+ +LEE F S++ RLLK DLLDTL L+ QNELDLALKVF FVRKEVWYK
Sbjct: 54 IQSLKLARSSTPRLEEVFNSKLSRLLKTDLLDTLAVLQNQNELDLALKVFEFVRKEVWYK 113
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKE-GLDPDTRVYTEMIGVYLQVGMIDKAME 184
PD+ LY MI M+G+NK + MAEE F +L+KE GL PDTR +TEMIG YLQVGMIDKAME
Sbjct: 114 PDILLYHAMIQMVGRNKMVEMAEEFFGKLEKEEGLKPDTRAFTEMIGAYLQVGMIDKAME 173
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVYQK 241
TYE MKASGC P KLTF ILIRNLE+AG+EELV ++++C Y+++P++FLEEV +K
Sbjct: 174 TYERMKASGCDPDKLTFRILIRNLEDAGKEELVDRIKKECGDYMDYPKKFLEEVERK 230
>gi|255578900|ref|XP_002530303.1| ATP binding protein, putative [Ricinus communis]
gi|223530159|gb|EEF32070.1| ATP binding protein, putative [Ricinus communis]
Length = 244
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 130/237 (54%), Positives = 166/237 (70%), Gaps = 11/237 (4%)
Query: 10 MGCLKFHFSQMGFHQRPQ----ISLPSGKKIQALTVTCGLRDANKKPMWRSRVLSSEAIQ 65
M LKF F Q P +P + VTC LR +KP+WRS+ +S+EAIQ
Sbjct: 1 MASLKFKF------QFPPPLRIFQIPKTPNFKTSFVTCSLRGGPRKPLWRSKRVSTEAIQ 54
Query: 66 AVHAMKLAKSSS-KLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWY 124
A+ ++KLAKSS+ +L + F +++ RLLK DLLD L L++QNELDLALKVF FV+KE+WY
Sbjct: 55 AIQSLKLAKSSNPRLHQVFNTKLSRLLKTDLLDVLEILQKQNELDLALKVFEFVQKEIWY 114
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPDL+LY MI MLGKNK MAE F +L+KEGL PDTR + EMIG YL+VG +KAME
Sbjct: 115 KPDLTLYYGMIEMLGKNKMTEMAEGYFSKLEKEGLKPDTRAFNEMIGAYLKVGTTEKAME 174
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVYQK 241
Y MK SGC P KLTF ILIRNLE AG +LV ++++C Y+++PE+FLEEV +K
Sbjct: 175 MYGRMKESGCVPDKLTFVILIRNLEEAGRNDLVDIIKKECGDYMDYPEKFLEEVERK 231
>gi|449469204|ref|XP_004152311.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
gi|449484870|ref|XP_004157003.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
Length = 245
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 120/233 (51%), Positives = 168/233 (72%), Gaps = 2/233 (0%)
Query: 10 MGCLKFHFSQMGFHQR-PQISLPSGKKIQALTVTCGLRDANKKPMWRSRVLSSEAIQAVH 68
+G L+ HF Q+G Q SL G + CGLR + +P+ SRV S+EAIQAV
Sbjct: 6 VGPLQLHFLQLGLRQNLTNRSLRCGTAAPPPNIICGLRKGSNRPLGLSRVPSNEAIQAVQ 65
Query: 69 AMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDL 128
++KLAKS+SK+E+ +++ RLLKADL D L+EL+RQNEL+L+L+VF F++ E W++PDL
Sbjct: 66 SLKLAKSTSKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQNEEWFEPDL 125
Query: 129 SLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYET 188
LY MI+++GKNK I MAEE+F +L+K+GL+PDTR + EM+G YLQV MI++A+ETY
Sbjct: 126 RLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAVETYRL 185
Query: 189 MKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVYQK 241
M ASGCTP +LTF ILI+NLE EE V++DC +Y++ P++F + QK
Sbjct: 186 MIASGCTPDELTFKILIKNLEKF-REEFAVVVKKDCNEYLDNPQKFFNDNGQK 237
>gi|224286190|gb|ACN40805.1| unknown [Picea sitchensis]
Length = 274
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 107/203 (52%), Positives = 147/203 (72%), Gaps = 3/203 (1%)
Query: 42 TCGLRDA--NKKPMWRSRVLSSEAIQAVHAMKLAKSSS-KLEEGFQSRICRLLKADLLDT 98
C +RD N+ P+WR R+LS+EAIQAV A++ AK +LE+ F ++I RLLK DLL
Sbjct: 68 VCNMRDKGQNRGPLWRGRILSTEAIQAVQALRRAKGDPQRLEKAFATKIPRLLKKDLLAV 127
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L EL+RQ++ DLAL+VF VRKE+WY+P+LSL++DMI+MLG+NK+I E + EL+KEG
Sbjct: 128 LQELQRQDQCDLALQVFKAVRKEMWYRPNLSLHADMIMMLGRNKRIEEVEAVLLELQKEG 187
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
L PDTRV TE+IG ++ VGM+ AMET+E MK + C P K TFT+LI+ L+ GE +L
Sbjct: 188 LRPDTRVCTEIIGAFIHVGMVQNAMETFELMKQTDCHPDKSTFTVLIQGLQRLGEIDLAT 247
Query: 219 AVRRDCIQYVEFPERFLEEVYQK 241
AVR +QY++ P E+V Q+
Sbjct: 248 AVREQSVQYLDEPLEIFEDVSQE 270
>gi|388510802|gb|AFK43467.1| unknown [Lotus japonicus]
Length = 259
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/213 (54%), Positives = 161/213 (75%), Gaps = 3/213 (1%)
Query: 40 TVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSS-SKLEEGFQSRICRLLKADLLDT 98
+ CGLR + +K SRV+S E IQ +HA+KLAKSS KL + ++ RLL AD LD
Sbjct: 48 VIVCGLRASFRK-RRPSRVISKEGIQVIHALKLAKSSEQKLYQVLNEKLTRLLNADALDL 106
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L EL+RQNEL L+LKVFNF+R+E + L LYSDMIL+LG+NK + AEELF ++ ++G
Sbjct: 107 LGELQRQNELHLSLKVFNFLREEPGFDALLPLYSDMILLLGRNKMVGEAEELFSQVVEKG 166
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
L PDTR++TEMIGVYLQ G +KAME Y +MKASGC+P KLTFTILIR+LE +GE+ELV
Sbjct: 167 LKPDTRMFTEMIGVYLQGGNTEKAMELYRSMKASGCSPDKLTFTILIRSLEKSGEQELVE 226
Query: 219 AVRRDCIQYVEFPERFLEEVYQKH-RKTQVDLV 250
++++C+ Y++ P++F++++ QK ++ V+LV
Sbjct: 227 TLKQECVDYIDLPDKFIQQIEQKQVKEGHVNLV 259
>gi|357454525|ref|XP_003597543.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355486591|gb|AES67794.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 246
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 120/231 (51%), Positives = 161/231 (69%), Gaps = 8/231 (3%)
Query: 26 PQISLPSGKKIQALTVTCGLRDA-NKKPMWRSRVLSSEAIQAVHAMKLAKSSS-KLEEGF 83
P ++ + + +A TV CGLR NKKP S V+S E++Q +HA+KLAK+S KL +
Sbjct: 17 PPLNSTTNNRSKATTVVCGLRSCKNKKP--PSMVISKESVQVIHALKLAKNSEEKLNQVL 74
Query: 84 QSRICRLLKADLLDTLTELRRQNELDLALKVFNFV--RKEVWY-KPDLSLYSDMILMLGK 140
+S++ RLLK D+L L EL RQN+L L+LKV F+ +E Y K L LYSD IL+LGK
Sbjct: 75 KSKLLRLLKPDVLIVLAELHRQNQLHLSLKVLEFIISDEEAGYDKLLLPLYSDTILLLGK 134
Query: 141 NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT 200
NK I AEE+F E+ ++GL PDTR++ EMIGVYLQVG +KAME Y +MKASGC P LT
Sbjct: 135 NKMIEKAEEMFYEVVEKGLKPDTRLFNEMIGVYLQVGNTEKAMEVYRSMKASGCLPDALT 194
Query: 201 FTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVYQKH-RKTQVDLV 250
FTILIRNL N GE ELV ++++ YV P++F+++V KH +K ++LV
Sbjct: 195 FTILIRNLMNNGENELVETLKKESFDYVNKPDKFVQKVQLKHPKKRHINLV 245
>gi|388507400|gb|AFK41766.1| unknown [Medicago truncatula]
Length = 246
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 119/231 (51%), Positives = 161/231 (69%), Gaps = 8/231 (3%)
Query: 26 PQISLPSGKKIQALTVTCGLRDA-NKKPMWRSRVLSSEAIQAVHAMKLAKSSS-KLEEGF 83
P ++ + + +A TV CGLR NKKP S V+S E++Q +HA+KLAK+S KL +
Sbjct: 17 PPLNSTTNNRSKATTVVCGLRSCKNKKP--PSMVISKESVQVIHALKLAKNSEEKLNQVL 74
Query: 84 QSRICRLLKADLLDTLTELRRQNELDLALKVFNFV--RKEVWY-KPDLSLYSDMILMLGK 140
+S++ RLLK D+L L EL RQN+L L+LKV F+ +E Y K L LYSD IL+LGK
Sbjct: 75 KSKLLRLLKPDVLIVLAELHRQNQLHLSLKVLEFIISDEEAGYDKLLLPLYSDTILLLGK 134
Query: 141 NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT 200
NK I AEE+F E+ ++GL PDTR++ EMIGVYLQVG +KAME Y +MKASGC P LT
Sbjct: 135 NKMIEKAEEMFYEVVEKGLKPDTRLFNEMIGVYLQVGNTEKAMEVYRSMKASGCLPDALT 194
Query: 201 FTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVYQKH-RKTQVDLV 250
FTILIRNL N GE ELV ++++ YV P++F+++V K+ +K ++LV
Sbjct: 195 FTILIRNLMNNGENELVETLKKESFDYVNKPDKFVQKVQLKNPKKRHINLV 245
>gi|358248622|ref|NP_001240168.1| uncharacterized protein LOC100781412 [Glycine max]
gi|255642193|gb|ACU21361.1| unknown [Glycine max]
Length = 246
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 98/196 (50%), Positives = 141/196 (71%), Gaps = 7/196 (3%)
Query: 40 TVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTL 99
+ CGLR ++ K R+R+LS E+I+ +HA+KLA+S + +++ RLLK D L+ L
Sbjct: 36 VIICGLR-SSYKARRRTRILSKESIEVIHALKLARSPDHV---LNAKLSRLLKPDALNLL 91
Query: 100 TELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGL 159
EL+RQN+L L+LKVF+F+R+E+ + L LY+DMIL+LG+NK+I MAEELF E ++GL
Sbjct: 92 DELQRQNQLHLSLKVFHFIREELGHDTLLQLYADMILLLGRNKRIDMAEELFSEALEKGL 151
Query: 160 DPDTRVYTEMIGVYLQVGMIDKAMETYETMK---ASGCTPHKLTFTILIRNLENAGEEEL 216
PDTR+ +EMIG YLQ+GM DKAM+ Y +MK A +P K TFTILIR L+ G+ EL
Sbjct: 152 KPDTRLCSEMIGAYLQLGMADKAMQIYASMKEDWACSSSPDKFTFTILIRYLQKNGQHEL 211
Query: 217 VAAVRRDCIQYVEFPE 232
+++DC+ YV+ P+
Sbjct: 212 AETLKQDCLHYVDSPD 227
>gi|297744458|emb|CBI37720.3| unnamed protein product [Vitis vinifera]
Length = 208
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/184 (46%), Positives = 116/184 (63%), Gaps = 2/184 (1%)
Query: 46 RDANKKPMWRSRVLSSEAIQAVHAMKLAK-SSSKLEEGFQSRICRLLKADLLDTLTELRR 104
R N+KP+ R R LS EAIQAV A+K AK S LE F+S++ RLLK D++ L +L
Sbjct: 4 RSQNRKPLQRGRNLSIEAIQAVQALKRAKRDESSLERVFESKVRRLLKLDMIAVLKQLLN 63
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE-GLDPDT 163
QNE LALKVF+ VRKE WYKP +SLY++MI +LG N L LKKE GL+ +T
Sbjct: 64 QNECLLALKVFDDVRKEYWYKPQVSLYAEMIRVLGSNGLFEQVHLLLSYLKKETGLELET 123
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
+ ++ + M AME ++ MK SGC P+K +F ILI+ LE+ GE ++ A V+ D
Sbjct: 124 EGFNALLRTLIDFDMTGPAMECFQLMKTSGCEPNKSSFRILIKGLESKGELDISATVKLD 183
Query: 224 CIQY 227
+Y
Sbjct: 184 AQKY 187
>gi|225428340|ref|XP_002279994.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46870
[Vitis vinifera]
Length = 246
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/191 (45%), Positives = 118/191 (61%), Gaps = 2/191 (1%)
Query: 39 LTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAK-SSSKLEEGFQSRICRLLKADLLD 97
T+ R N+KP+ R R LS EAIQAV A+K AK S LE F+S++ RLLK D++
Sbjct: 35 FTINMRDRSQNRKPLQRGRNLSIEAIQAVQALKRAKRDESSLERVFESKVRRLLKLDMIA 94
Query: 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
L +L QNE LALKVF+ VRKE WYKP +SLY++MI +LG N L LKKE
Sbjct: 95 VLKQLLNQNECLLALKVFDDVRKEYWYKPQVSLYAEMIRVLGSNGLFEQVHLLLSYLKKE 154
Query: 158 -GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
GL+ +T + ++ + M AME ++ MK SGC P+K +F ILI+ LE+ GE ++
Sbjct: 155 TGLELETEGFNALLRTLIDFDMTGPAMECFQLMKTSGCEPNKSSFRILIKGLESKGELDI 214
Query: 217 VAAVRRDCIQY 227
A V+ D +Y
Sbjct: 215 SATVKLDAQKY 225
>gi|255546690|ref|XP_002514404.1| conserved hypothetical protein [Ricinus communis]
gi|223546501|gb|EEF48000.1| conserved hypothetical protein [Ricinus communis]
Length = 248
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 118/224 (52%), Gaps = 25/224 (11%)
Query: 29 SLPSGKKIQALTVTCGLRDA--------------------NKKPMWRSRVLSSEAIQAVH 68
S+ SG++ A TV+ L+ + N+K + + R LS E+IQAV
Sbjct: 10 SVTSGQEFSAFTVSKALKSSRIKRRRRRMVMVVNAKGKEDNRKQLQKGRNLSIESIQAVQ 69
Query: 69 AMKLA---KSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYK 125
++K A ++S L+ F+S+ RLLK D+L L EL RQN LALKVF +RKE WYK
Sbjct: 70 SLKRAYYFSTNSNLDSVFRSKFSRLLKLDMLSVLRELLRQNHCLLALKVFKDIRKEYWYK 129
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEG--LDPDTRVYTEMIGVYLQVGMIDKAM 183
P +SLY DMI + N E L LK E ++P+T + + + + AM
Sbjct: 130 PQVSLYDDMIKAMASNGYFEQVELLCIYLKTETNLIEPETDAFNALFTTLITFNLSGFAM 189
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227
E Y MKA C P +LTF ILI LE+ GE A +R+D ++
Sbjct: 190 EFYGLMKAVKCEPDRLTFRILINGLESMGESSASAILRQDAHKF 233
>gi|168046423|ref|XP_001775673.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672946|gb|EDQ59476.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 392
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 111/194 (57%), Gaps = 6/194 (3%)
Query: 37 QALTVTCG----LRDANKKPMWRSR-VLSSEAIQAVHAMKLAKSSSKLEEG-FQSRICRL 90
Q+ V CG + + P+WR R +S EA+Q V +K K + E Q+ RL
Sbjct: 179 QSFQVRCGGSLKAKGKPRGPLWRQRKGVSKEALQVVFELKRCKGDKQKERVVLQNSASRL 238
Query: 91 LKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEEL 150
LK DLL L ELRRQ E LA +VF+ VRKE WYKPD+ LY +M+ GKNK + EE
Sbjct: 239 LKMDLLMVLEELRRQQECSLAKQVFDMVRKEEWYKPDVFLYREMMDTFGKNKLMEDVEEF 298
Query: 151 FCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210
+ ++++EGL P+ + TEM+G Y++ I +A E +E ++ G P + + IL R L+
Sbjct: 299 YQQMQEEGLAPNAMILTEMMGAYIRNNNITRAYEIFEEIEQGGHQPEYVMYEILCRGLKK 358
Query: 211 AGEEELVAAVRRDC 224
AG+ E + V C
Sbjct: 359 AGDFEKLKIVMEAC 372
>gi|297811021|ref|XP_002873394.1| hypothetical protein ARALYDRAFT_487743 [Arabidopsis lyrata subsp.
lyrata]
gi|297319231|gb|EFH49653.1| hypothetical protein ARALYDRAFT_487743 [Arabidopsis lyrata subsp.
lyrata]
Length = 745
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 118/224 (52%), Gaps = 19/224 (8%)
Query: 19 QMGFHQRPQISLPSGKKIQALTVTCGL----RDANKKPMWRSRVLSSEAIQAVHAMKLAK 74
++GF R I G +I L G+ R N+KP+ R R+LS EAIQAV A+K A
Sbjct: 504 RLGFKLRGGI----GGRIPILRRAMGIKMRDRSKNRKPLQRGRMLSIEAIQAVQALKRAN 559
Query: 75 SSSK----------LEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWY 124
++ S+ RLLK D++ L EL RQNE LALKVF +RKE WY
Sbjct: 560 PLLPPPSPSSSSALVDRVIISKFRRLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWY 619
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKE-GLDPDTRVYTEMIGVYLQVGMIDKAM 183
KP + +Y+DMI ++ N + L+ +K E GL D + ++ + L + D M
Sbjct: 620 KPQVRMYTDMITVMADNSLMEEVNYLYSAMKSEKGLMADIEWFNTLLTILLNHKLFDLVM 679
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227
+ Y M++ G P + +F IL+ LE+ GE L A VR+D +Y
Sbjct: 680 DCYAFMQSIGYEPDRASFRILVLGLESNGEMSLSAIVRKDAHEY 723
>gi|449454430|ref|XP_004144958.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
gi|449473007|ref|XP_004153757.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
gi|449517150|ref|XP_004165609.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
Length = 249
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 106/178 (59%), Gaps = 2/178 (1%)
Query: 49 NKKPMWRSRVLSSEAIQAVHAMKLAKSS-SKLEEGFQSRICRLLKADLLDTLTELRRQNE 107
N+KP+ + R LS EAIQAV ++K K +L+ + S+I RLLK D+L L EL RQNE
Sbjct: 48 NRKPLQKGRNLSIEAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNE 107
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG-LDPDTRVY 166
LALKVF VRKE WYKP +SLY+D+I +L N + + +K E L P+ +
Sbjct: 108 CSLALKVFEDVRKEHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAEADLAPEIDGF 167
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDC 224
++ + + + AME+Y MK GC P K +F I+I+ LE+ GE + V++D
Sbjct: 168 NALLKALVSHNLGELAMESYYLMKDVGCEPDKASFRIVIKGLESKGEAVDLRTVKQDA 225
>gi|357122492|ref|XP_003562949.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Brachypodium distachyon]
Length = 246
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 116/197 (58%), Gaps = 10/197 (5%)
Query: 52 PMWRSR-VLSSEAIQAVHAMKLAKSSS-KLEEGFQSRICRLLKADLLDTLTELRRQNELD 109
P+WRS+ ++ EA+ A+ +K K KL+E + + RLLKAD L L EL RQ E+D
Sbjct: 54 PLWRSKKLIGKEALFAIQGLKRFKGDEEKLKEFVKRHVARLLKADKLAVLGELERQEEVD 113
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
L++K+F V+KE WYKPD+ +Y D+I+ L K K++ A E++ ++ E L PD++ Y E+
Sbjct: 114 LSVKMFRIVQKEDWYKPDVYMYKDLIIALAKCKKMEEAMEIWGNMRDEKLFPDSQTYAEV 173
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVE 229
I +L+ G AM YE MK S P +L F +L++ L L V++D +
Sbjct: 174 IRGFLRYGSPSDAMNIYEDMKRSPDPPEELPFRVLLKGL--LPHPLLRNRVKQDFEEL-- 229
Query: 230 FPERFL----EEVYQKH 242
FPER + EE++ H
Sbjct: 230 FPERHIYDPPEEIFGMH 246
>gi|224106373|ref|XP_002314145.1| predicted protein [Populus trichocarpa]
gi|222850553|gb|EEE88100.1| predicted protein [Populus trichocarpa]
Length = 257
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 112/189 (59%), Gaps = 7/189 (3%)
Query: 27 QISLPSGKKIQALTVTCGLRDAN----KKPMWRSR-VLSSEAIQAVHAMKLAKSSS--KL 79
Q+ L IQ+ V GLR + + P+WR + ++ EA+ + +K K+ KL
Sbjct: 35 QLPLSKASNIQSFLVPAGLRQYHDGRPRGPLWRGKKLIGKEALFVILGLKRFKNDDDEKL 94
Query: 80 EEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
+ ++ + RLLK D++ L+EL RQ E+ LA+K+F ++K+ WYKPD+ LY D+I+ L
Sbjct: 95 DRFIKTHVFRLLKLDMIAVLSELERQEEVSLAVKIFRVIQKQDWYKPDVYLYKDLIMALL 154
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
K ++ A +L+ +++ E L PD+++YTE I YL+ G AM YE MK S P +L
Sbjct: 155 KTGKMEEAMKLWEDMRNEDLFPDSQMYTEAIRGYLRDGSPADAMNIYEDMKKSPDPPEEL 214
Query: 200 TFTILIRNL 208
F IL++ L
Sbjct: 215 PFRILLKGL 223
>gi|21618227|gb|AAM67277.1| unknown [Arabidopsis thaliana]
Length = 262
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 84/240 (35%), Positives = 125/240 (52%), Gaps = 25/240 (10%)
Query: 19 QMGFHQRPQISLPSGKKIQ----ALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAK 74
++GF R +G +IQ A+ + R N+KP+ R R+LS EAIQAV A+K A
Sbjct: 15 RLGFKLRGG----TGGRIQILQRAMVIKMRDRSKNRKPLQRGRMLSIEAIQAVQALKRAN 70
Query: 75 S----------------SSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFV 118
S+ L+ S+ RLLK D++ L EL RQNE LALKVF +
Sbjct: 71 PLLPPAPVPSTSTTSSSSALLDRVIISKFRRLLKFDMVAVLRELLRQNECSLALKVFEEI 130
Query: 119 RKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE-GLDPDTRVYTEMIGVYLQVG 177
RKE WYKP + +Y+DMI ++ N + L+ +K E GL + + ++ + L
Sbjct: 131 RKEYWYKPQVRMYTDMITVMADNSLMEEVNYLYSAMKSEKGLMAEIEWFNTLLTILLNHK 190
Query: 178 MIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEE 237
+ D M+ Y M++ G P + +F +L+ LE+ GE L A VR+D +Y F+EE
Sbjct: 191 LFDLVMDCYAFMQSIGYEPDRASFRVLVLGLESNGEMGLSAIVRQDAHEYYGESLEFIEE 250
>gi|224102763|ref|XP_002312792.1| predicted protein [Populus trichocarpa]
gi|222849200|gb|EEE86747.1| predicted protein [Populus trichocarpa]
Length = 216
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 112/198 (56%), Gaps = 7/198 (3%)
Query: 37 QALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSK--LEEGFQSRICRLLKAD 94
+ + +R N+KP+ + R LS EAIQ + A+KLA ++ K L++ F+S+ RLLK D
Sbjct: 3 RTIRAAASVRSLNRKPLQKGRNLSIEAIQTIQALKLAYNNDKSLLDQVFRSKFSRLLKFD 62
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
+ L EL RQN LALKVF +R E WYKP + LY+DMI ++ N I + LF L
Sbjct: 63 MTAVLRELLRQNHCLLALKVFEDIRVEHWYKPKVLLYNDMIQVMASNGFIEEVQLLFRYL 122
Query: 155 KKE---GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA--SGCTPHKLTFTILIRNLE 209
+ E L T + +++ + + ME YE MK+ GC P + TF +L+ LE
Sbjct: 123 ESEITGDLQFKTDEFNQLLATLISFKLGGLVMECYEWMKSVVVGCEPDRSTFKLLVNGLE 182
Query: 210 NAGEEELVAAVRRDCIQY 227
+ GE EL VR+D ++
Sbjct: 183 SIGEFELSVVVRQDAYKF 200
>gi|326512702|dbj|BAK03258.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 251
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 101/161 (62%), Gaps = 2/161 (1%)
Query: 50 KKPMWRSR-VLSSEAIQAVHAMKLAKSSS-KLEEGFQSRICRLLKADLLDTLTELRRQNE 107
+ P+WRS+ ++ EA+ A+ +K K KL E + + RLLKAD L L EL RQ E
Sbjct: 57 RGPLWRSKKLIGKEALFAIQGLKRFKGDEEKLREFIKRHVARLLKADKLAVLGELERQEE 116
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
+DL++K+F ++KE WYKPD+ +Y D+I+ L K K++ A +++ +K+E L PD++ Y
Sbjct: 117 VDLSVKMFRIIQKEDWYKPDVYMYKDLIISLAKCKKMDEAMDIWGNMKEENLFPDSQTYA 176
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
E+I +L+ G AM YE MK S P +L F +L++ L
Sbjct: 177 EVIRGFLRYGSPSDAMNIYEDMKRSPDPPEELPFRVLLKGL 217
>gi|449455076|ref|XP_004145279.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
gi|449475090|ref|XP_004154371.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
gi|449508514|ref|XP_004163333.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
Length = 255
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 101/161 (62%), Gaps = 2/161 (1%)
Query: 50 KKPMWRSR-VLSSEAIQAVHAMK-LAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNE 107
+ P+WRSR + EA+ + +K + K E+ +S + RLLK D++ L EL RQ E
Sbjct: 61 RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
+ LA+K+F +RK+ WYKPD+ +Y D+I+ L ++K++ A +L+ +++E L PD++ YT
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
E+I +L+ G AM YE MK S P +L F IL++ L
Sbjct: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGL 221
>gi|22531104|gb|AAM97056.1| putative protein [Arabidopsis thaliana]
gi|30023740|gb|AAP13403.1| At5g09320 [Arabidopsis thaliana]
Length = 262
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 122/240 (50%), Gaps = 25/240 (10%)
Query: 19 QMGFHQRPQISLPSGKKIQ----ALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAK 74
++GF R +G +IQ A+ + R N+KP+ R R+LS EAIQAV A+K A
Sbjct: 15 RLGFKLRG----GTGGRIQILQRAMVIKMRDRSKNRKPLQRGRMLSIEAIQAVQALKRAN 70
Query: 75 SSSKL----------------EEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFV 118
+ S+ RLLK D++ L EL RQNE LALKVF +
Sbjct: 71 PLLPPPPVPSTSTTSSSSALLDRVIISKFRRLLKFDMVAVLRELLRQNECSLALKVFEEI 130
Query: 119 RKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE-GLDPDTRVYTEMIGVYLQVG 177
RKE WYKP + +Y+DMI ++ N + L+ +K E GL + + ++ + L
Sbjct: 131 RKEYWYKPQVRMYTDMITVMADNSLMEEVNYLYSAMKSEKGLMAEIEWFNTLLTILLNHK 190
Query: 178 MIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEE 237
+ D M+ Y M++ G P + +F +L+ LE+ GE L A VR+D +Y F+EE
Sbjct: 191 LFDLVMDCYAFMQSIGYEPDRASFRVLVLGLESNGEMGLSAIVRQDAHEYYGESLEFIEE 250
>gi|226494319|ref|NP_001143431.1| uncharacterized protein LOC100276080 [Zea mays]
gi|195620394|gb|ACG32027.1| hypothetical protein [Zea mays]
Length = 254
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 116/199 (58%), Gaps = 10/199 (5%)
Query: 50 KKPMWRSR-VLSSEAIQAVHAMKLAKSSS-KLEEGFQSRICRLLKADLLDTLTELRRQNE 107
+ P+WRS+ ++ E++ A+ +K K KL + + + RLLKAD L L EL RQ E
Sbjct: 60 RGPLWRSKKLIGKESLFAIQGLKRFKGDEEKLADFVRRYVARLLKADKLAVLGELERQEE 119
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
+DLA+K+F ++KE WYKPD+ +Y D+I+ L K K++ A ++ ++ E L PD++ Y
Sbjct: 120 VDLAVKMFRIIQKEDWYKPDIYMYKDLIIALAKCKKMEEAMVIWGNMRDENLFPDSQTYA 179
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227
E+I +L+ G AM YE MK S P +L F +L++ L L V++D ++
Sbjct: 180 EVIRGFLRYGSPSDAMNIYEDMKKSPDPPEELPFRVLLKGL--LPHPLLRNRVKQDFEEF 237
Query: 228 VEFPERFL----EEVYQKH 242
FPER + EE++ H
Sbjct: 238 --FPERHIYDPPEEIFGMH 254
>gi|15242388|ref|NP_196494.1| Vacuolar sorting protein 9 (VPS9) domain protein [Arabidopsis
thaliana]
gi|9955519|emb|CAC05458.1| putative protein [Arabidopsis thaliana]
gi|332003991|gb|AED91374.1| Vacuolar sorting protein 9 (VPS9) domain protein [Arabidopsis
thaliana]
Length = 712
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 117/227 (51%), Gaps = 21/227 (9%)
Query: 32 SGKKIQ----ALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKL-------- 79
+G +IQ A+ + R N+KP+ R R+LS EAIQAV A+K A
Sbjct: 474 TGGRIQILQRAMVIKMRDRSKNRKPLQRGRMLSIEAIQAVQALKRANPLLPPPPVPSTST 533
Query: 80 --------EEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLY 131
+ S+ RLLK D++ L EL RQNE LALKVF +RKE WYKP + +Y
Sbjct: 534 TSSSSALLDRVIISKFRRLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMY 593
Query: 132 SDMILMLGKNKQIAMAEELFCELKKE-GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
+DMI ++ N + L+ +K E GL + + ++ + L + D M+ Y M+
Sbjct: 594 TDMITVMADNSLMEEVNYLYSAMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQ 653
Query: 191 ASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEE 237
+ G P + +F +L+ LE+ GE L A VR+D +Y F+EE
Sbjct: 654 SIGYEPDRASFRVLVLGLESNGEMGLSAIVRQDAHEYYGESLEFIEE 700
>gi|414590513|tpg|DAA41084.1| TPA: hypothetical protein ZEAMMB73_430161 [Zea mays]
Length = 254
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 114/199 (57%), Gaps = 10/199 (5%)
Query: 50 KKPMWRSR-VLSSEAIQAVHAMKLAKSSS-KLEEGFQSRICRLLKADLLDTLTELRRQNE 107
+ P+WRS+ ++ EA+ A+ +K K KL + + + RLLKAD L L EL RQ E
Sbjct: 60 RGPLWRSKKLIGKEALFAIQGLKRFKGDEEKLADFVRRYVARLLKADKLAVLGELERQEE 119
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
+DLA+K+F ++KE WYKPD+ +Y D+I+ L K K + A ++ ++ E L PD++ Y
Sbjct: 120 VDLAVKMFRIIQKEDWYKPDIYMYKDLIIALAKCKNMEEAMVIWGNMRDENLFPDSQTYA 179
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227
E+I +L+ G AM YE MK S P +L F +L++ L L V++D +
Sbjct: 180 EVIRGFLRYGSPSDAMNIYEDMKKSPDPPEELPFRVLLKGL--LPHPLLRNRVKQDFEEM 237
Query: 228 VEFPERFL----EEVYQKH 242
FPER + EE++ H
Sbjct: 238 --FPERHIYDPPEEIFGMH 254
>gi|242050490|ref|XP_002462989.1| hypothetical protein SORBIDRAFT_02g035860 [Sorghum bicolor]
gi|241926366|gb|EER99510.1| hypothetical protein SORBIDRAFT_02g035860 [Sorghum bicolor]
Length = 258
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 115/199 (57%), Gaps = 10/199 (5%)
Query: 50 KKPMWRSR-VLSSEAIQAVHAMKLAKSSS-KLEEGFQSRICRLLKADLLDTLTELRRQNE 107
+ P+WRS+ ++ EA+ A+ +K K KL + + + RLLKAD L L EL RQ E
Sbjct: 64 RGPLWRSKKLIGKEALFAIQGLKRFKGDEEKLADFVRRYVARLLKADKLAVLGELERQEE 123
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
+DLA+K+F ++KE WYKPD+ +Y D+I+ L K K++ A ++ ++ E L PD++ Y
Sbjct: 124 VDLAVKMFRIIQKEDWYKPDIYMYKDVIIALAKCKKMEEAMVIWGNMRDENLFPDSQTYA 183
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227
E+I +L+ G AM YE MK S P +L F +L++ L L V++D +
Sbjct: 184 EVIRGFLRYGSPSDAMNIYEDMKKSPDPPEELPFRVLLKGL--LPHPLLRNRVKQDFEEL 241
Query: 228 VEFPERFL----EEVYQKH 242
FPER + EE++ H
Sbjct: 242 --FPERHIYDPPEEIFGMH 258
>gi|225434780|ref|XP_002281924.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46870
isoform 1 [Vitis vinifera]
gi|359478900|ref|XP_003632183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46870
isoform 2 [Vitis vinifera]
gi|297745987|emb|CBI16043.3| unnamed protein product [Vitis vinifera]
Length = 252
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 99/159 (62%), Gaps = 2/159 (1%)
Query: 52 PMWRSR-VLSSEAIQAVHAMKLAKSSSK-LEEGFQSRICRLLKADLLDTLTELRRQNELD 109
P+WR + ++ EA+ + +K K + L + +S + RLLK D++ LTEL RQ E+
Sbjct: 60 PLWRGKKLIGKEALFVILGLKRFKDDEENLRKFIKSHVLRLLKMDMVAVLTELERQEEVS 119
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
LA++VF +RK+ WYKPD+ LY D+I+ L K K++ A +L+ ++KE L PD + YTE+
Sbjct: 120 LAVEVFRVIRKQDWYKPDVYLYKDLIIALAKCKKMDDAMQLWESMRKEDLFPDYQTYTEV 179
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
I +L+ G AM YE MK S P +L F IL++ L
Sbjct: 180 IRGFLRYGSPADAMNIYEDMKKSPDPPEELPFRILLKGL 218
>gi|115472667|ref|NP_001059932.1| Os07g0549200 [Oryza sativa Japonica Group]
gi|28564798|dbj|BAC57728.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113611468|dbj|BAF21846.1| Os07g0549200 [Oryza sativa Japonica Group]
gi|215766634|dbj|BAG98696.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218199812|gb|EEC82239.1| hypothetical protein OsI_26409 [Oryza sativa Indica Group]
Length = 262
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 97/161 (60%), Gaps = 2/161 (1%)
Query: 50 KKPMWRSR-VLSSEAIQAVHAMKLAKSSS-KLEEGFQSRICRLLKADLLDTLTELRRQNE 107
+ P+WRS+ ++ EA+ A+ +K K +L E + + RLLKAD L L EL RQ E
Sbjct: 68 RGPLWRSKKLIGKEALFAIQGLKRFKGDEERLGEFVRRYVARLLKADKLAVLGELERQEE 127
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
+DLA+K+F ++KE WYKPD+ +Y D+I+ L K K++ A ++ + E L PD + Y
Sbjct: 128 VDLAVKMFRIIQKEDWYKPDVFMYKDLIVALAKCKKMDEAMVIWGNMTDENLFPDAQTYA 187
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
E+I +L+ G AM YE MK S P +L F +L++ L
Sbjct: 188 EVIRGFLRYGSPSDAMNIYEEMKKSPDPPEELPFRVLLKGL 228
>gi|225434377|ref|XP_002276778.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46870
[Vitis vinifera]
gi|297745785|emb|CBI15841.3| unnamed protein product [Vitis vinifera]
Length = 252
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 98/159 (61%), Gaps = 2/159 (1%)
Query: 52 PMWRSR-VLSSEAIQAVHAMKLAKSSS-KLEEGFQSRICRLLKADLLDTLTELRRQNELD 109
P+WR + ++ EA+ + +K K KL + +S + RLLK D++ LTEL RQ E+
Sbjct: 60 PLWRGKKLIGKEALFVILGLKRFKDDEEKLRKFIKSHVLRLLKMDMIAVLTELERQEEVT 119
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
LA++VF +K+ WYKPD+ LY D+I+ L K K++ A +L+ ++KE L PD + YTE+
Sbjct: 120 LAVEVFRVFQKQDWYKPDVYLYKDLIIALAKCKKMDNAMQLWESMRKEDLFPDYQTYTEV 179
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
I +L+ G AM YE MK S P +L F IL++ L
Sbjct: 180 IRGFLRHGSPADAMNIYEDMKKSPDPPEELPFRILLKGL 218
>gi|255552422|ref|XP_002517255.1| conserved hypothetical protein [Ricinus communis]
gi|223543626|gb|EEF45155.1| conserved hypothetical protein [Ricinus communis]
Length = 258
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 104/172 (60%), Gaps = 6/172 (3%)
Query: 43 CGLRDAN----KKPMWRSR-VLSSEAIQAVHAMKLAKSSS-KLEEGFQSRICRLLKADLL 96
GLR + + P+WR + ++ EA+ + +K K KL++ ++ + RLLK D++
Sbjct: 53 SGLRQYHDGRPRGPLWRGKKLIGKEALFVILGLKRFKDEEEKLDKFIKTHVLRLLKMDMI 112
Query: 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKK 156
LTEL RQ E+ LA KVF ++K+ WY PD+ LY D+I+ L ++ ++ A +L+ ++
Sbjct: 113 AVLTELERQEEVSLATKVFQIIQKQDWYNPDVYLYKDLIIALTRSGKMDQAMKLWEAMRS 172
Query: 157 EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
E L PD+++YTE+I +L+ G AM YE MK S P +L F IL++ L
Sbjct: 173 ENLFPDSQMYTELIRGFLRDGSPGDAMNIYEDMKKSPDPPEELPFRILLKGL 224
>gi|242059543|ref|XP_002458917.1| hypothetical protein SORBIDRAFT_03g042630 [Sorghum bicolor]
gi|241930892|gb|EES04037.1| hypothetical protein SORBIDRAFT_03g042630 [Sorghum bicolor]
Length = 523
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 98/159 (61%)
Query: 50 KKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELD 109
KK M + +++ ++ + A+ A + +LE+ +S + RLL+ DLL L EL RQ+ +
Sbjct: 326 KKEMGKEGLMAVAQLKRLAALPPAGAHPRLEQFMRSHVSRLLRTDLLAVLAELLRQDHVI 385
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
L++K++ VRKE+WY+PD+ Y DM+ ML +NK+I +++ +LK E + D Y ++
Sbjct: 386 LSMKIYGVVRKEIWYRPDMYFYRDMLYMLARNKKIDDTRQVWADLKSEDVLFDQHTYGDI 445
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ + G+ID AME YE M++S P L F ++++ L
Sbjct: 446 VRAFCDAGLIDLAMEIYEDMRSSPDPPLSLPFRVILKGL 484
>gi|108707659|gb|ABF95454.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|215767688|dbj|BAG99916.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 247
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 98/160 (61%)
Query: 49 NKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNEL 108
KK M + ++ ++ + A+ A S +LE+ +S + RLL+ DLL L EL RQ+ +
Sbjct: 49 RKKEMGKEGLMVVGQLKRLAALPPAGGSPRLEQFMRSHVSRLLRNDLLAVLAELLRQDHV 108
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
L++K+++ VRKE+WY+PD+ Y DM+ ML +NK+I +++ +LK E + D Y +
Sbjct: 109 LLSMKIYSVVRKEIWYRPDMYFYRDMLYMLARNKKIEETRQVWADLKSEDVLFDQHTYGD 168
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
++ + G+ID AME YE M++S P L F ++++ L
Sbjct: 169 IVRAFCDAGLIDLAMEFYEDMRSSPDPPLSLPFRVILKGL 208
>gi|359482912|ref|XP_003632859.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Vitis vinifera]
gi|297743240|emb|CBI36107.3| unnamed protein product [Vitis vinifera]
Length = 230
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 109/202 (53%), Gaps = 11/202 (5%)
Query: 22 FHQRPQISLPSGKKIQALTVT------CGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKS 75
H + P K +Q +T T CG RD N+ P+ + RVLS EAIQA+ ++K A
Sbjct: 6 LHSNFALFSPIKKPVQTITTTSYTPIRCGPRD-NRGPLMKGRVLSIEAIQAIQSLKRAHR 64
Query: 76 S--SKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSD 133
+K+++ + RL+KADLL TL EL RQ++ DLAL+VF+ VR E+WYK +LSLY+D
Sbjct: 65 GDPTKIDDFLSKTLSRLVKADLLATLNELLRQDQCDLALRVFSAVRSELWYKTELSLYAD 124
Query: 134 MILMLGKNKQIAMAEELFCELKKEG-LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS 192
++ L + + L C+L+ EG + D + ++ + D + Y MK S
Sbjct: 125 LVSALARKGMKEEIDRLICDLEGEGSVRCDDKGIVRLVKAVIAAERRDSTVRIYGLMKRS 184
Query: 193 GC-TPHKLTFTILIRNLENAGE 213
GC + +L R L GE
Sbjct: 185 GCGGGDEYVGRVLSRGLRRLGE 206
>gi|326531840|dbj|BAK01296.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 229
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 97/160 (60%)
Query: 49 NKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNEL 108
KK M + +++ ++ + A+ A +L E + + RLL+ DLL L EL RQ+ +
Sbjct: 31 RKKEMGKEGLMAVAQLKRLAALPPAGGHQRLVEYMKLHVSRLLRTDLLAVLAELLRQDHV 90
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
L++K++ VRKE+WY+PD+ Y DM+ ML +NK++ +++ +LK EG+ D Y +
Sbjct: 91 LLSMKIYGVVRKEIWYRPDMYFYRDMLHMLARNKKVDETRQVWADLKSEGVMFDQHTYGD 150
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
++ V+ G+ID AME YE M++S P L F ++++ L
Sbjct: 151 IVRVFCDAGLIDLAMEFYEDMRSSPEPPLSLPFRVILKGL 190
>gi|125585935|gb|EAZ26599.1| hypothetical protein OsJ_10499 [Oryza sativa Japonica Group]
gi|218192624|gb|EEC75051.1| hypothetical protein OsI_11161 [Oryza sativa Indica Group]
Length = 195
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 92/145 (63%)
Query: 64 IQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVW 123
++ + A+ A S +LE+ +S + RLL+ DLL L EL RQ+ + L++K+++ VRKE+W
Sbjct: 12 LKRLAALPPAGGSPRLEQFMRSHVSRLLRNDLLAVLAELLRQDHVLLSMKIYSVVRKEIW 71
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y+PD+ Y DM+ ML +NK+I +++ +LK E + D Y +++ + G+ID AM
Sbjct: 72 YRPDMYFYRDMLYMLARNKKIEETRQVWADLKSEDVLFDQHTYGDIVRAFCDAGLIDLAM 131
Query: 184 ETYETMKASGCTPHKLTFTILIRNL 208
E YE M++S P L F ++++ L
Sbjct: 132 EFYEDMRSSPDPPLSLPFRVILKGL 156
>gi|449442589|ref|XP_004139064.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Cucumis sativus]
Length = 256
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 109/182 (59%), Gaps = 6/182 (3%)
Query: 53 MWR-SRVLSSEAIQAVHAMKLAKSSS-KLEEGFQSRICRLLKADLLDTLTELRRQNELDL 110
+WR + + E + V +K +S+ +L+ S + RLLK+DL+ L EL+RQN + L
Sbjct: 56 IWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFL 115
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
+K++N VRKEVWY+PD+ Y DM++ML KNK++ ++++ +LKKEG+ D + ++I
Sbjct: 116 CMKLYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDII 175
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEF 230
YL M+ +AM+ Y M+ S P L F ++++ L EL V+ D ++ F
Sbjct: 176 RAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGL--IPYPELREQVKDDFLEL--F 231
Query: 231 PE 232
P+
Sbjct: 232 PD 233
>gi|357164141|ref|XP_003579962.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Brachypodium distachyon]
Length = 233
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 104/199 (52%), Gaps = 3/199 (1%)
Query: 26 PQISLPSGKKIQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEG--- 82
P ++ A+T+T R N+KP R R LS+EAIQAV ++K A S G
Sbjct: 13 PSAAVRRSTAPTAITITMRDRSKNRKPTQRGRYLSTEAIQAVQSLKRATLSGTPAAGAVA 72
Query: 83 FQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNK 142
+++ RLLKAD++ EL Q E LALKVF +RKE WYKP L Y D+I +L
Sbjct: 73 TDTKLRRLLKADMVAVFRELAAQGEALLALKVFEEIRKEHWYKPRLFWYVDLITVLASKG 132
Query: 143 QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFT 202
++ + LK+E L+PDT + ++ L M+ + MK P ++T+
Sbjct: 133 LLSEVSKACSYLKREQLEPDTDGFNLLLKTLLDAEFTQLTMDCFRLMKLWNSEPDRITYR 192
Query: 203 ILIRNLENAGEEELVAAVR 221
LI LE+ GE +L A +R
Sbjct: 193 TLINGLESLGEMDLSAKMR 211
>gi|219886827|gb|ACL53788.1| unknown [Zea mays]
gi|219887537|gb|ACL54143.1| unknown [Zea mays]
gi|414879223|tpg|DAA56354.1| TPA: hypothetical protein ZEAMMB73_432076 [Zea mays]
gi|414879224|tpg|DAA56355.1| TPA: hypothetical protein ZEAMMB73_432076 [Zea mays]
Length = 248
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 106/184 (57%), Gaps = 4/184 (2%)
Query: 49 NKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNEL 108
KK M + ++ ++ + A+ A +LE+ +S + RLL+ DLL L EL RQ+ +
Sbjct: 50 RKKEMGKEGLMVVAQLKRLAALPPAGGHPRLEQFMRSHVSRLLRTDLLAVLAELLRQDHV 109
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
L++K++ VRKE+WY+PD+ Y DM+ ML +NK+I +++ +LK E + D Y +
Sbjct: 110 SLSMKIYGVVRKEIWYRPDMYFYRDMLYMLARNKKINETRQVWADLKSEDVLFDQHTYGD 169
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYV 228
++ + +ID AME Y+ M++S P L F ++++ L EL +++D ++
Sbjct: 170 IVRAFCDADLIDLAMEIYDDMRSSPDPPLSLPFRVILKGL--VPYPELREKIKQDFLEL- 226
Query: 229 EFPE 232
FP+
Sbjct: 227 -FPD 229
>gi|357112657|ref|XP_003558124.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Brachypodium distachyon]
Length = 248
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 107/184 (58%), Gaps = 4/184 (2%)
Query: 49 NKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNEL 108
KK M + +++ ++ + A+ A +L++ + + RLL+ DLL L EL RQ+ +
Sbjct: 50 RKKEMGKEGLMAVAQLKRLAALPPAGGHQRLDQYMRLHVSRLLRTDLLAVLAELLRQDHV 109
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
L++K++ VRKE+WY+PD+ Y DM+ ML +NK+I +++ +LK E + D Y +
Sbjct: 110 LLSMKIYGVVRKEIWYRPDMYFYRDMLHMLARNKKIDETRQVWADLKSEDVLFDQHTYGD 169
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYV 228
++ V+ G+ID AME YE M++S P L F ++++ L EL ++ D ++
Sbjct: 170 IVRVFCDAGLIDLAMEFYEDMRSSPEPPLSLPFRVILKGL--IPYPELREKIKHDFLEL- 226
Query: 229 EFPE 232
FP+
Sbjct: 227 -FPD 229
>gi|15232674|ref|NP_190271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75266318|sp|Q9STF9.1|PP266_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g46870
gi|5541672|emb|CAB51178.1| putative protein [Arabidopsis thaliana]
gi|26450732|dbj|BAC42475.1| unknown protein [Arabidopsis thaliana]
gi|28950815|gb|AAO63331.1| At3g46870 [Arabidopsis thaliana]
gi|332644692|gb|AEE78213.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 257
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 100/159 (62%), Gaps = 2/159 (1%)
Query: 52 PMWRSR-VLSSEAIQAVHAMK-LAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELD 109
P+WR + ++ EA+ + +K L + KL++ ++ + RLLK D+L + EL RQ E
Sbjct: 65 PLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEETA 124
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
LA+K+F ++K+ WY+PD+ +Y D+I+ L K+K++ A L+ ++KKE L PD++ YTE+
Sbjct: 125 LAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYTEV 184
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
I +L+ G AM YE M S P +L F +L++ L
Sbjct: 185 IRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGL 223
>gi|297815852|ref|XP_002875809.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321647|gb|EFH52068.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 257
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 99/159 (62%), Gaps = 2/159 (1%)
Query: 52 PMWRSR-VLSSEAIQAVHAMK-LAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELD 109
P+WR + ++ EA+ + +K L KL++ ++ + RLLK D+L + EL RQ E
Sbjct: 65 PLWRGKKLIGKEALFVILGLKRLKDDDEKLQKFIKTHVFRLLKLDMLAVIGELERQEETA 124
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
LA+K+F ++K+ WY+PD+ +Y D+I+ L K+K++ A L+ ++KKE L PD++ YTE+
Sbjct: 125 LAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYTEV 184
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
I +L+ G AM YE M S P +L F +L++ L
Sbjct: 185 IRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGL 223
>gi|356538964|ref|XP_003537970.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Glycine max]
Length = 255
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 95/161 (59%), Gaps = 2/161 (1%)
Query: 50 KKPMWRSR-VLSSEAIQAVHAMK-LAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNE 107
+ P+W+ + ++ EA+ + K KL + ++ + RLLK D++ LTEL RQ +
Sbjct: 61 RGPLWKGKKLIGKEALFVISGFKRFNDDEDKLHKFIKTHVLRLLKMDMIAVLTELERQEQ 120
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
+ LAL +F ++K+ WYKPD LY D+I+ L + K++ +L+ ++KE L PD++ YT
Sbjct: 121 VSLALMMFKVMQKQDWYKPDAYLYKDLIIALARAKKMDEVLQLWESMRKENLFPDSQTYT 180
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
E+I +L G AM YE MK S P +L F IL++ L
Sbjct: 181 EVIRGFLNYGSPADAMNIYEDMKNSPDPPEELPFRILLKGL 221
>gi|357438675|ref|XP_003589614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478662|gb|AES59865.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 232
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 113/198 (57%), Gaps = 10/198 (5%)
Query: 53 MWR-SRVLSSEAIQAVHAMKLAKSSS-KLEEGFQSRICRLLKADLLDTLTELRRQNELDL 110
+WR + L E + +K +S +L+ +S + RLLK+DL+ L E RQ+ + L
Sbjct: 29 IWRRKKELGKEGLIITKELKRLQSDPVRLDRFVRSNVSRLLKSDLVSVLFEFHRQDNVFL 88
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
++K+++ VRKE+WY+PD+ Y DM++ML +NK++ + ++ +LK EG+ D + +++
Sbjct: 89 SMKLYDIVRKEIWYRPDMFFYRDMLMMLARNKRVDETKRVWDDLKGEGVLFDQHTFGDIV 148
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEF 230
YL GM +AM+ YE M+ S P L F ++++ L EL ++ D ++ F
Sbjct: 149 RAYLDSGMPSEAMDIYEEMRQSPEPPLSLPFRVILKGL--IPYPELREKIKDDFLEV--F 204
Query: 231 PERFL----EEVYQKHRK 244
P+ + E+++ H K
Sbjct: 205 PDMIIYDPPEDLFDDHEK 222
>gi|326488207|dbj|BAJ89942.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 231
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 102/196 (52%), Gaps = 3/196 (1%)
Query: 29 SLPSGKKIQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEG---FQS 85
S S ++ + T+T R N+KP R R LS+EAIQAV ++K A S G
Sbjct: 16 SAASVRRSTSSTITMRDRGKNRKPTQRGRYLSTEAIQAVQSLKRATLSGAPAAGAVATDP 75
Query: 86 RICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIA 145
++ RLLKAD++ EL Q E LALKVF +RKE WYKP L Y D+I +L +
Sbjct: 76 KLRRLLKADMVAVFRELAAQGEAHLALKVFEEIRKEHWYKPRLFWYVDLITVLASKGLRS 135
Query: 146 MAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ LK+E L+PDT + ++ L M+ + MK P + T+ L+
Sbjct: 136 EVGKACSYLKREQLEPDTDGFNLLLKTLLDAEFTQLTMDCFRLMKLWDSEPDRTTYITLV 195
Query: 206 RNLENAGEEELVAAVR 221
+ LE+ GE +L A +R
Sbjct: 196 KGLESLGEMDLSAKMR 211
>gi|242076196|ref|XP_002448034.1| hypothetical protein SORBIDRAFT_06g019940 [Sorghum bicolor]
gi|241939217|gb|EES12362.1| hypothetical protein SORBIDRAFT_06g019940 [Sorghum bicolor]
Length = 216
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 100/181 (55%), Gaps = 6/181 (3%)
Query: 46 RDANKKPMWRSRVLSSEAIQAVHAMKLAK----SSSKLEEGFQSRICRLLKADLLDTLTE 101
R N+KP R R LS+EAIQAV ++K A S+ + ++ RLLK D++ E
Sbjct: 4 RGKNRKPTQRGRYLSTEAIQAVQSLKRAARRSAPSASTAATVEPKLRRLLKTDMVAVFRE 63
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE-LKKEGLD 160
L Q E LA +VF +RKE WYKP L Y D++ +L +K + + + C LKKE L+
Sbjct: 64 LAAQGEALLAFQVFEEIRKEHWYKPRLLWYVDLVTVLA-SKGLRIEVDRACSYLKKEQLE 122
Query: 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
PDT + ++ L G M+ + MK P ++T+T LI+ LE+ G+ EL A +
Sbjct: 123 PDTEGFNLLLKELLDAGFTQLTMDCFRLMKLWDSDPDRITYTTLIKGLESLGKMELSAGI 182
Query: 221 R 221
R
Sbjct: 183 R 183
>gi|224059705|ref|XP_002299976.1| predicted protein [Populus trichocarpa]
gi|222847234|gb|EEE84781.1| predicted protein [Populus trichocarpa]
Length = 194
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 96/151 (63%), Gaps = 1/151 (0%)
Query: 59 LSSEAIQAVHAMKLAKSSS-KLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNF 117
+ E + A +K +S+ +L+ S + RLLK+DLL L E +RQ+++ L +K+++
Sbjct: 1 MGKEGLMAAKELKRLQSNPVRLDRFITSNVSRLLKSDLLAVLAEFQRQDQVFLCMKLYDV 60
Query: 118 VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177
VRKE+WY+PD+ L+ DM++ML +NK++ A +++ +L++E + D + ++I +L G
Sbjct: 61 VRKEIWYRPDMFLFRDMLMMLARNKKVDEANQVWRDLRREEVLFDQHTFGDIIRAFLDNG 120
Query: 178 MIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ KAM+ YE M+ S P L F ++++ L
Sbjct: 121 LPSKAMDIYEEMRQSPDPPISLPFRVILKGL 151
>gi|414586768|tpg|DAA37339.1| TPA: hypothetical protein ZEAMMB73_755953 [Zea mays]
Length = 209
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 97/180 (53%), Gaps = 4/180 (2%)
Query: 46 RDANKKPMWRSRVLSSEAIQAVHAMKLA----KSSSKLEEGFQSRICRLLKADLLDTLTE 101
R N+KP R R LS+EAIQAV ++K A ++ + ++ RLLKAD++ E
Sbjct: 4 RSKNRKPTQRGRYLSTEAIQAVQSLKRAALRGAPAASAAAVVEPKLRRLLKADMVAVFRE 63
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L Q E LAL+VF +RKE WYKP L Y D++ +L + LK+E L+P
Sbjct: 64 LAAQGEALLALQVFEEIRKEHWYKPRLLWYVDLVTVLASKGLRTEVDRACSYLKREQLEP 123
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
DT + ++ L G ++ + MK P ++T+T LI+ LE+ G+ EL A +R
Sbjct: 124 DTEGFNLLLKALLDSGFTQLTLDCFRLMKLWDSDPDRITYTTLIKGLESLGKMELSAGIR 183
>gi|356569420|ref|XP_003552899.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Glycine max]
Length = 234
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 97/158 (61%), Gaps = 2/158 (1%)
Query: 53 MWR-SRVLSSEAIQAVHAMKLAKSSS-KLEEGFQSRICRLLKADLLDTLTELRRQNELDL 110
+WR + + E + +K +S +L+ +S + RLLK+DL+ L E +RQN+ L
Sbjct: 31 IWRRKKEMGKEGLVVAKELKRFRSDPVRLDRFIRSSVSRLLKSDLVAVLAEFQRQNQFFL 90
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
+K+++ VRKE+WY+PD+ Y DM++ML +NK++ A++++ +LK E + D + ++I
Sbjct: 91 CVKLYDIVRKEIWYRPDMFFYRDMLMMLARNKRVEEAKKVWGDLKTEEVLFDQHTFGDII 150
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+L G+ +AM+ YE M+ S P L F ++++ L
Sbjct: 151 RAFLDNGLPSEAMDIYEEMRQSPEPPLSLPFRVILKGL 188
>gi|356523434|ref|XP_003530344.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Glycine max]
Length = 232
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 97/158 (61%), Gaps = 2/158 (1%)
Query: 53 MWR-SRVLSSEAIQAVHAMKLAKSSS-KLEEGFQSRICRLLKADLLDTLTELRRQNELDL 110
+WR + + E + +K +S +L+ +S + RLLK+DL+ L E +RQN+ L
Sbjct: 33 IWRRKKEMGKEGLVVAKELKRFRSDPVRLDRFIRSSVSRLLKSDLVAVLAEFQRQNQFFL 92
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
+K+++ VRKE+WY+PD+ Y DM++ML +NK++ A++++ +LK E + D + ++I
Sbjct: 93 CVKLYDIVRKEIWYRPDMFFYRDMLMMLARNKRVEEAKKVWGDLKTEEVLFDQHTFGDII 152
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+L G+ +AM+ YE M+ S P L F ++++ L
Sbjct: 153 RAFLDNGLPSEAMDIYEEMRQSPEPPLSLPFRVILKGL 190
>gi|116310293|emb|CAH67311.1| OSIGBa0106G07.7 [Oryza sativa Indica Group]
Length = 259
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 101/187 (54%), Gaps = 5/187 (2%)
Query: 40 TVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLA-----KSSSKLEEGFQSRICRLLKAD 94
+T R N+KP R R LS+EAIQAV ++K A S++ + ++ RLLKAD
Sbjct: 29 VITMRDRSKNRKPTQRGRYLSTEAIQAVQSLKRAALRGSPSAAAAAVPVEPKLRRLLKAD 88
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
++ EL Q E LAL+VF +RKE WYKP L LY D++ +L + +++ L
Sbjct: 89 MVAVFRELAAQGEALLALQVFEEIRKEHWYKPKLLLYVDIVTVLASKGLRSEVDKVCSYL 148
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
K+E L+PDT + ++ L M+ + MK P ++T+ LI+ LE+ GE
Sbjct: 149 KREQLEPDTEGFNVLLKALLDAEFTQLTMDCFRLMKLWDSDPDRITYRTLIKGLESIGEM 208
Query: 215 ELVAAVR 221
L A ++
Sbjct: 209 GLSADIK 215
>gi|38344476|emb|CAE05491.2| OSJNBa0022H21.11 [Oryza sativa Japonica Group]
Length = 257
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 101/187 (54%), Gaps = 5/187 (2%)
Query: 40 TVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLA-----KSSSKLEEGFQSRICRLLKAD 94
+T R N+KP R R LS+EAIQAV ++K A S++ + ++ RLLKAD
Sbjct: 27 VITMRDRSKNRKPTQRGRYLSTEAIQAVQSLKRAALRGSPSAAAAAVPVEPKLRRLLKAD 86
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
++ EL Q E LAL+VF +RKE WYKP L LY D++ +L + +++ L
Sbjct: 87 MVAVFRELAAQGEALLALQVFEEIRKEHWYKPKLLLYVDIVTVLASKGLRSEVDKVCSYL 146
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
K+E L+PDT + ++ L M+ + MK P ++T+ LI+ LE+ GE
Sbjct: 147 KREQLEPDTEGFNVLLKALLDAEFTQLTMDCFRLMKLWDSDPDRITYRTLIKGLESLGEM 206
Query: 215 ELVAAVR 221
L A ++
Sbjct: 207 GLSADIK 213
>gi|125548701|gb|EAY94523.1| hypothetical protein OsI_16297 [Oryza sativa Indica Group]
Length = 228
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 99/181 (54%), Gaps = 5/181 (2%)
Query: 46 RDANKKPMWRSRVLSSEAIQAVHAMKLA-----KSSSKLEEGFQSRICRLLKADLLDTLT 100
R N+KP R R LS+EAIQAV ++K A S++ + ++ RLLKAD++
Sbjct: 4 RSKNRKPTQRGRYLSTEAIQAVQSLKRAALRGSPSAAAAAVPVEPKLRRLLKADMVAVFR 63
Query: 101 ELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD 160
EL Q E LAL+VF +RKE WYKP L LY D++ +L + +++ LK+E L+
Sbjct: 64 ELAAQGEALLALQVFEEIRKEHWYKPKLLLYVDIVTVLASKGLRSEVDKVCSYLKREQLE 123
Query: 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
PDT + ++ L M+ + MK P ++T+ LI+ LE+ GE L A +
Sbjct: 124 PDTEGFNVLLKALLDAEFTQLTMDCFRLMKLWDSDPDRITYRTLIKGLESIGEMGLSADI 183
Query: 221 R 221
+
Sbjct: 184 K 184
>gi|125600640|gb|EAZ40216.1| hypothetical protein OsJ_24661 [Oryza sativa Japonica Group]
Length = 256
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 91/161 (56%), Gaps = 8/161 (4%)
Query: 50 KKPMWRSR-VLSSEAIQAVHAMKLAKSSS-KLEEGFQSRICRLLKADLLDTLTELRRQNE 107
+ P+WRS+ ++ EA+ A+ +K K +L E + + RLLKAD L L EL RQ E
Sbjct: 68 RGPLWRSKKLIGKEALFAIQGLKRFKGDEERLGEFVRRYVARLLKADKLAVLGELERQEE 127
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
+ F ++KE WYKPD+ +Y D+I+ L K K++ A ++ + E L PD + Y
Sbjct: 128 M------FRIIQKEDWYKPDVFMYKDLIVALAKCKKMDEAMVIWGNMTDENLFPDAQTYA 181
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
E+I +L+ G AM YE MK S P +L F +L++ L
Sbjct: 182 EVIRGFLRYGSPSDAMNIYEEMKKSPDPPEELPFRVLLKGL 222
>gi|115458948|ref|NP_001053074.1| Os04g0475500 [Oryza sativa Japonica Group]
gi|113564645|dbj|BAF14988.1| Os04g0475500 [Oryza sativa Japonica Group]
gi|125590727|gb|EAZ31077.1| hypothetical protein OsJ_15174 [Oryza sativa Japonica Group]
Length = 228
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 99/181 (54%), Gaps = 5/181 (2%)
Query: 46 RDANKKPMWRSRVLSSEAIQAVHAMKLA-----KSSSKLEEGFQSRICRLLKADLLDTLT 100
R N+KP R R LS+EAIQAV ++K A S++ + ++ RLLKAD++
Sbjct: 4 RSKNRKPTQRGRYLSTEAIQAVQSLKRAALRGSPSAAAAAVPVEPKLRRLLKADMVAVFR 63
Query: 101 ELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD 160
EL Q E LAL+VF +RKE WYKP L LY D++ +L + +++ LK+E L+
Sbjct: 64 ELAAQGEALLALQVFEEIRKEHWYKPKLLLYVDIVTVLASKGLRSEVDKVCSYLKREQLE 123
Query: 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
PDT + ++ L M+ + MK P ++T+ LI+ LE+ GE L A +
Sbjct: 124 PDTEGFNVLLKALLDAEFTQLTMDCFRLMKLWDSDPDRITYRTLIKGLESLGEMGLSADI 183
Query: 221 R 221
+
Sbjct: 184 K 184
>gi|225436656|ref|XP_002280518.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Vitis vinifera]
Length = 248
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 96/155 (61%), Gaps = 1/155 (0%)
Query: 55 RSRVLSSEAIQAVHAMKLAKSSS-KLEEGFQSRICRLLKADLLDTLTELRRQNELDLALK 113
R + + E + A +K +S + + +S + RLL++DL+ L E +RQ+++ L++K
Sbjct: 51 RKKEMGKEGLIAAKELKRLRSDPVRFDRFMRSSVSRLLRSDLVSVLAEFQRQDQVFLSMK 110
Query: 114 VFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY 173
+++ VRKE+WY+PD+ Y DM++ML +NK++ + ++ +LK+E + D + +++ +
Sbjct: 111 LYDVVRKEIWYRPDMYFYRDMLMMLARNKKVDETKRVWEDLKREEVLFDQHTFGDIVRAF 170
Query: 174 LQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
L G+ +AM+ YE M+ S P L + ++++ L
Sbjct: 171 LDGGLPSEAMDIYEEMRRSPDPPLSLPYRVILKGL 205
>gi|147841740|emb|CAN68786.1| hypothetical protein VITISV_024068 [Vitis vinifera]
gi|296083864|emb|CBI24252.3| unnamed protein product [Vitis vinifera]
Length = 194
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 94/151 (62%), Gaps = 1/151 (0%)
Query: 59 LSSEAIQAVHAMKLAKSSS-KLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNF 117
+ E + A +K +S + + +S + RLL++DL+ L E +RQ+++ L++K+++
Sbjct: 1 MGKEGLIAAKELKRLRSDPVRFDRFMRSSVSRLLRSDLVSVLAEFQRQDQVFLSMKLYDV 60
Query: 118 VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177
VRKE+WY+PD+ Y DM++ML +NK++ + ++ +LK+E + D + +++ +L G
Sbjct: 61 VRKEIWYRPDMYFYRDMLMMLARNKKVDETKRVWEDLKREEVLFDQHTFGDIVRAFLDGG 120
Query: 178 MIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ +AM+ YE M+ S P L + ++++ L
Sbjct: 121 LPSEAMDIYEEMRRSPDPPLSLPYRVILKGL 151
>gi|356547293|ref|XP_003542050.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Glycine max]
Length = 231
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 97/169 (57%), Gaps = 2/169 (1%)
Query: 42 TCGLRDANKKPMWR-SRVLSSEAIQAVHAMKLAKSS-SKLEEGFQSRICRLLKADLLDTL 99
G+ + +WR + + E + +K +S +L+ Q RLLK+DL+ L
Sbjct: 20 ASGVASSPSLSIWRRKKEMGKEGLVVAKELKRLRSDLVRLDLFIQPSFSRLLKSDLVAVL 79
Query: 100 TELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGL 159
E +RQN++ L K+++ V KE+WY+PD+ Y DM++ML +NK++ A+ ++ +LK+E +
Sbjct: 80 VEFQRQNQVFLCTKLYDIVWKEIWYRPDMFFYRDMLMMLARNKRVEEAKSVWGDLKEEEV 139
Query: 160 DPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
D + ++I +L G+ +AM+ YE M+ S P L F ++++ L
Sbjct: 140 LFDQHTFGDIIRAFLDNGLPSEAMDIYEEMRQSPEPPLSLPFRVILKGL 188
>gi|297840301|ref|XP_002888032.1| hypothetical protein ARALYDRAFT_475108 [Arabidopsis lyrata subsp.
lyrata]
gi|297333873|gb|EFH64291.1| hypothetical protein ARALYDRAFT_475108 [Arabidopsis lyrata subsp.
lyrata]
Length = 196
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 91/151 (60%), Gaps = 1/151 (0%)
Query: 59 LSSEAIQAVHAMK-LAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNF 117
+S E + A +K L +L+ S + RLLK+DL+ L E +RQN++ L +K++
Sbjct: 1 MSKEGLIAAKELKRLQTQLVRLDRFIASHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60
Query: 118 VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177
VR+E+WY+PD+ Y DM++ML +NK++ ++++ +LKKEG+ D + +++ +L
Sbjct: 61 VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEGVLFDQHTFGDLVRAFLDNE 120
Query: 178 MIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ +A+ Y M+ S P L F ++++ L
Sbjct: 121 LPLEAIRLYGEMRDSPDPPLSLPFRVILKGL 151
>gi|145336941|ref|NP_176425.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122180316|sp|Q1PFH7.1|PPR89_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62350
gi|91806011|gb|ABE65734.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332195836|gb|AEE33957.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 196
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 91/151 (60%), Gaps = 1/151 (0%)
Query: 59 LSSEAIQAVHAMK-LAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNF 117
+S E + A +K L S +L+ S + RLLK+DL+ L E +RQN++ L +K++
Sbjct: 1 MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60
Query: 118 VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177
VR+E+WY+PD+ Y DM++ML +NK++ ++++ +LKKE + D + +++ +L
Sbjct: 61 VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120
Query: 178 MIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ +AM Y M+ S P L F ++++ L
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGL 151
>gi|116830983|gb|ABK28447.1| unknown [Arabidopsis thaliana]
Length = 197
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 91/151 (60%), Gaps = 1/151 (0%)
Query: 59 LSSEAIQAVHAMK-LAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNF 117
+S E + A +K L S +L+ S + RLLK+DL+ L E +RQN++ L +K++
Sbjct: 1 MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60
Query: 118 VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177
VR+E+WY+PD+ Y DM++ML +NK++ ++++ +LKKE + D + +++ +L
Sbjct: 61 VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120
Query: 178 MIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ +AM Y M+ S P L F ++++ L
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGL 151
>gi|359487410|ref|XP_002273156.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Vitis vinifera]
Length = 538
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 92/175 (52%), Gaps = 13/175 (7%)
Query: 44 GLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELR 103
GL+ KK + SR+L +EA A+ ++ +S K L +L+ L E
Sbjct: 56 GLQRQPKKDL--SRILRTEA--AISGIERKANSRKYST--------LWPKAVLEALDEAI 103
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+N + ALK+F +RK+ WY+P Y+ +++MLGK KQ A LF + EGL P
Sbjct: 104 RENRYESALKIFGLLRKQHWYEPRCQTYTKLLMMLGKCKQPEQASLLFEVMLSEGLRPTL 163
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKA-SGCTPHKLTFTILIRNLENAGEEELV 217
VYT ++ Y G +DKA T E MK+ S C P T++ILI+ G +L+
Sbjct: 164 DVYTALVSAYGHSGQLDKAFCTVEDMKSVSDCKPDVYTYSILIKCCTTLGRFDLI 218
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 112 LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIG 171
+ V F++K +Y P + ++ +I M G+ I EE F ++K +G+ P++ Y ++
Sbjct: 325 VSVMEFMKKR-FYSPTIVTFNIVIEMFGRVGNIEKMEEFFLKMKHQGVKPNSITYCSLVS 383
Query: 172 VYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
Y + G + K ++ S T F ++ AG+ E
Sbjct: 384 AYSKAGYLKKVDSILRQIENSDVTLDTPFFNCVLSAYGQAGDVE 427
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ + I G + QI E+ + E + G+ PD + + +I Y + M +K +
Sbjct: 268 PDIFTLNSFIWAYGNSGQIEKMEKWYDEFQLMGIRPDIKTFNILIRSYGKACMYEKMVSV 327
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
E MK +P +TF I+I G E
Sbjct: 328 MEFMKKRFYSPTIVTFNIVIEMFGRVGNIE 357
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Query: 119 RKEVWY--------KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
+ E WY +PD+ ++ +I GK + +KK P + +I
Sbjct: 288 KMEKWYDEFQLMGIRPDIKTFNILIRSYGKACMYEKMVSVMEFMKKRFYSPTIVTFNIVI 347
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
++ +VG I+K E + MK G P+ +T+ L+ AG + V ++ R
Sbjct: 348 EMFGRVGNIEKMEEFFLKMKHQGVKPNSITYCSLVSAYSKAGYLKKVDSILR 399
>gi|302790069|ref|XP_002976802.1| hypothetical protein SELMODRAFT_416782 [Selaginella moellendorffii]
gi|300155280|gb|EFJ21912.1| hypothetical protein SELMODRAFT_416782 [Selaginella moellendorffii]
Length = 319
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 88/163 (53%), Gaps = 3/163 (1%)
Query: 49 NKKPMWRSR-VLSSEAIQAVHAMKLAKSSS-KLEEGFQSRICRLLKADLLDTLTELRRQN 106
K +WR+R LS E V + KS ++ ++++ RLLK DL L EL+RQ
Sbjct: 68 QKGHLWRTRKTLSRETQLVVSDLVRHKSEPERVSSIIKTKVSRLLKLDLFGALRELQRQL 127
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKK-EGLDPDTRV 165
E +LALKVF ++KE WY PD+ Y+ M+ L K + AE+LF E++ +GL+P+
Sbjct: 128 EGELALKVFYEIKKEEWYTPDILQYAKMLGCLAKAGLTSQAEKLFEEMQSVDGLEPELNT 187
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
YTE + + +DK T MK GC P + + +L L
Sbjct: 188 YTEYLRSLIFSRQVDKVHATVREMKEQGCPPDLVVYKVLWVGL 230
>gi|302797539|ref|XP_002980530.1| hypothetical protein SELMODRAFT_420139 [Selaginella moellendorffii]
gi|300151536|gb|EFJ18181.1| hypothetical protein SELMODRAFT_420139 [Selaginella moellendorffii]
Length = 334
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 87/159 (54%), Gaps = 3/159 (1%)
Query: 49 NKKPMWRSR-VLSSEAIQAVHAMKLAKSSS-KLEEGFQSRICRLLKADLLDTLTELRRQN 106
K +WR+R LS E V + KS ++ ++++ RLLK DL L EL+RQ
Sbjct: 87 QKGHLWRTRKTLSRETQLVVSDLVRHKSEPERVSSIIKTKVSRLLKLDLFGALRELQRQL 146
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKK-EGLDPDTRV 165
E +LALKVF ++KE WY PD+ Y+ M+ L K + AE+LF E++ +GL+P+
Sbjct: 147 EGELALKVFYEIKKEEWYTPDILQYAKMLGCLAKAGLTSQAEKLFEEMQSVDGLEPELNT 206
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTIL 204
YTE + + +DK T MK GC P + + +L
Sbjct: 207 YTEYLRSLIFSRQVDKVHATVREMKEQGCPPDLVVYKVL 245
>gi|351727605|ref|NP_001238702.1| uncharacterized protein LOC100306428 [Glycine max]
gi|255628511|gb|ACU14600.1| unknown [Glycine max]
Length = 150
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 72/115 (62%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
D++ LTEL RQ ++ LAL +F ++K+ WYKPD LY D+I+ L + K++ +L+
Sbjct: 2 DMIAVLTELERQEQVSLALMMFKVMQKQDWYKPDAYLYKDLIIALARAKKMDEVLQLWES 61
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+++E L PD++ YTE+I +L G AM YE MK S P +L F IL++ L
Sbjct: 62 MREENLFPDSQTYTEVIRGFLNHGSPADAMNIYEDMKNSPDPPEELPFRILLKGL 116
>gi|297736301|emb|CBI24939.3| unnamed protein product [Vitis vinifera]
Length = 485
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 92/175 (52%), Gaps = 13/175 (7%)
Query: 44 GLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELR 103
GL+ KK + SR+L +EA A+ ++ +S K L +L+ L E
Sbjct: 56 GLQRQPKKDL--SRILRTEA--AISGIERKANSRKYST--------LWPKAVLEALDEAI 103
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+N + ALK+F +RK+ WY+P Y+ +++MLGK KQ A LF + EGL P
Sbjct: 104 RENRYESALKIFGLLRKQHWYEPRCQTYTKLLMMLGKCKQPEQASLLFEVMLSEGLRPTL 163
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKA-SGCTPHKLTFTILIRNLENAGEEELV 217
VYT ++ Y G +DKA T E MK+ S C P T++ILI+ G +L+
Sbjct: 164 DVYTALVSAYGHSGQLDKAFCTVEDMKSVSDCKPDVYTYSILIKCCTTLGRFDLI 218
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 112 LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIG 171
+ V F++K +Y P + ++ +I M G+ I EE F ++K +G+ P++ Y ++
Sbjct: 325 VSVMEFMKKR-FYSPTIVTFNIVIEMFGRVGNIEKMEEFFLKMKHQGVKPNSITYCSLVS 383
Query: 172 VYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
Y + G + K ++ S T F ++ AG+ E
Sbjct: 384 AYSKAGYLKKVDSILRQIENSDVTLDTPFFNCVLSAYGQAGDVE 427
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ + I G + QI E+ + E + G+ PD + + +I Y + M +K +
Sbjct: 268 PDIFTLNSFIWAYGNSGQIEKMEKWYDEFQLMGIRPDIKTFNILIRSYGKACMYEKMVSV 327
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
E MK +P +TF I+I G E
Sbjct: 328 MEFMKKRFYSPTIVTFNIVIEMFGRVGNIE 357
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Query: 119 RKEVWY--------KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
+ E WY +PD+ ++ +I GK + +KK P + +I
Sbjct: 288 KMEKWYDEFQLMGIRPDIKTFNILIRSYGKACMYEKMVSVMEFMKKRFYSPTIVTFNIVI 347
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
++ +VG I+K E + MK G P+ +T+ L+ AG + V ++ R
Sbjct: 348 EMFGRVGNIEKMEEFFLKMKHQGVKPNSITYCSLVSAYSKAGYLKKVDSILR 399
>gi|115466680|ref|NP_001056939.1| Os06g0172000 [Oryza sativa Japonica Group]
gi|55773690|dbj|BAD72273.1| putative PPR2 [Oryza sativa Japonica Group]
gi|113594979|dbj|BAF18853.1| Os06g0172000 [Oryza sativa Japonica Group]
gi|215697063|dbj|BAG91057.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218197679|gb|EEC80106.1| hypothetical protein OsI_21852 [Oryza sativa Indica Group]
gi|222635046|gb|EEE65178.1| hypothetical protein OsJ_20289 [Oryza sativa Japonica Group]
Length = 511
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 93/182 (51%), Gaps = 20/182 (10%)
Query: 56 SRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVF 115
S +L EA +AV K + G +R RLL +L+ L E D ALKVF
Sbjct: 98 SVILRREATKAVL--------DKRKPGKGTR--RLLPRTVLEALHERITALRWDSALKVF 147
Query: 116 NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175
+ +R +VWY+P + +Y +I MLGK KQ A ELF + EG P+ YT ++ Y +
Sbjct: 148 DLMRDQVWYRPYVGIYVKLITMLGKCKQPERAHELFQAMVDEGCAPNLESYTALVSAYSR 207
Query: 176 VGMIDKAMETYETMKAS-GCTPHKLTFTILIRNLENAGEEELV---------AAVRRDCI 225
G D+A E MKA+ GC P T++ILI++ +A + E V A +R + +
Sbjct: 208 SGRFDRAFSLLEQMKATPGCRPDVQTYSILIKSCLHAYDFERVKYLMEDMARAGIRPNVV 267
Query: 226 QY 227
Y
Sbjct: 268 TY 269
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ +I GK + A E E+ E PD + + G I+
Sbjct: 263 RPNVVTYNTLIDAYGKAGRFAEMESTLLEMLTENCKPDVWTMNSTLRAFGGSGQIETMES 322
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
YE +ASG +P+ T+ IL+ + A E + AV
Sbjct: 323 CYEKFQASGISPNIKTYNILLDSYGKAKMYEKMGAV 358
>gi|334185941|ref|NP_190885.5| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
gi|332645523|gb|AEE79044.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
Length = 499
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 86/166 (51%), Gaps = 11/166 (6%)
Query: 56 SRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVF 115
SR+L ++A AV ++ +S K L +L+ L E ++N ALK+F
Sbjct: 82 SRILRTDA--AVKGIERKANSEKY--------LTLWPKAVLEALDEAIKENRWQSALKIF 131
Query: 116 NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175
N +RK+ WY+P Y+ + +LG KQ A LF + EGL P VYT +I VY +
Sbjct: 132 NLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGK 191
Query: 176 VGMIDKAMETYETMKA-SGCTPHKLTFTILIRNLENAGEEELVAAV 220
++DKA T E MK+ S C P TFT+LI G +LV ++
Sbjct: 192 SELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSI 237
>gi|356552149|ref|XP_003544432.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Glycine max]
Length = 481
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 90/164 (54%), Gaps = 16/164 (9%)
Query: 45 LRDANKKPMWRSRVLSSEA-IQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELR 103
++D NK SR+L +EA I+ VH AKSSS + L LL++L +
Sbjct: 54 VKDPNKD---LSRILRTEAAIRGVH--NKAKSSSHKQ---------LWPKALLESLDDAI 99
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
++ AL++F +RK+ WY+P Y+ +++MLGK +Q A LF + EGL P
Sbjct: 100 KRCRSHSALEIFALLRKQYWYQPRCRTYAKLLMMLGKCRQPEEASLLFEIMLSEGLKPTV 159
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKA-SGCTPHKLTFTILIR 206
VYT ++ Y Q G++D+A T E MK+ C P T++ILIR
Sbjct: 160 DVYTALVSAYGQSGLLDQAFSTVEDMKSVVDCEPDVYTYSILIR 203
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Query: 114 VFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY 173
V +F+ K ++ P + Y+ +I + GK +I ++ F ++K G+ P++ Y ++ Y
Sbjct: 323 VMDFMEKR-FFTPTIVTYNTVIEVFGKAGEIEKMDQHFLKMKHLGVKPNSITYCSLVSAY 381
Query: 174 LQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVR-RDC 224
+VG IDK ++ S F +I AG EL A+R R C
Sbjct: 382 SKVGCIDKVDSIMRHVENSDVVLDTPFFNCIISAYGQAGNLKKMGELFLAMRERKC 437
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ + + G QI E+ + E + G+ PD + MI Y + GM +K
Sbjct: 264 PDVFTLNSFVGAYGNAGQIDKMEKWYDEFQLMGIKPDITTFNTMIKSYGKAGMYEKMKTV 323
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ M+ TP +T+ +I AGE E
Sbjct: 324 MDFMEKRFFTPTIVTYNTVIEVFGKAGEIE 353
Score = 36.6 bits (83), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLD-PDTRVYTEMIGVYLQVGMIDKAMETYETM 189
Y+ +I GK ++ ++ + G PD +G Y G IDK + Y+
Sbjct: 233 YNSIIDGYGKASMFEQMDDALNDMIENGNSHPDVFTLNSFVGAYGNAGQIDKMEKWYDEF 292
Query: 190 KASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+ G P TF +I++ AG E + V
Sbjct: 293 QLMGIKPDITTFNTMIKSYGKAGMYEKMKTV 323
>gi|75265624|sp|Q9SCP4.1|PP279_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g53170
gi|6630737|emb|CAB64220.1| nodulin / glutamate-ammonia ligase-like protein [Arabidopsis
thaliana]
Length = 447
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 86/166 (51%), Gaps = 11/166 (6%)
Query: 56 SRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVF 115
SR+L ++A AV ++ +S K L +L+ L E ++N ALK+F
Sbjct: 32 SRILRTDA--AVKGIERKANSEKY--------LTLWPKAVLEALDEAIKENRWQSALKIF 81
Query: 116 NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175
N +RK+ WY+P Y+ + +LG KQ A LF + EGL P VYT +I VY +
Sbjct: 82 NLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGK 141
Query: 176 VGMIDKAMETYETMKA-SGCTPHKLTFTILIRNLENAGEEELVAAV 220
++DKA T E MK+ S C P TFT+LI G +LV ++
Sbjct: 142 SELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSI 187
>gi|125524506|gb|EAY72620.1| hypothetical protein OsI_00485 [Oryza sativa Indica Group]
Length = 257
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 92/187 (49%), Gaps = 15/187 (8%)
Query: 40 TVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSK----LEEGFQSRICRLLKADL 95
++TCG RD N+ P+ R R LS+EAI AV ++K SS + + + RLLK DL
Sbjct: 31 SITCGPRD-NRGPLQRGRSLSTEAILAVQSLKRLTSSDRSPAAAAAAASTSLGRLLKGDL 89
Query: 96 LDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMA----EELF 151
L + EL+RQ LAL + R E WY+PD +LY+ + + A A E F
Sbjct: 90 LAAMAELQRQGHWSLALAALHVARAEPWYRPDPALYATFVSSSPATEDGAAAVDALVEAF 149
Query: 152 CELKKEG---LDPDTRVY--TEMIGVYLQVGMIDKAMETYE-TMKASGCTPHKLTFTILI 205
E K+ G +D + VY T ++ + G A YE ++ GC + + ++
Sbjct: 150 LEEKERGGGFVDGEEDVYKLTRLVRALVAKGRARAAWRVYEAAVRMGGCEVDEYMYRVMA 209
Query: 206 RNLENAG 212
R ++ G
Sbjct: 210 RGMKRLG 216
>gi|357125122|ref|XP_003564244.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Brachypodium distachyon]
Length = 502
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 75/135 (55%), Gaps = 3/135 (2%)
Query: 78 KLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILM 137
K E G +R RLL +L+ L E + ALKVF +R +VWY+P + +Y +I M
Sbjct: 103 KREPGKGTR--RLLPRTVLEALHERIAALRWESALKVFELMRDQVWYRPYVGIYIKLITM 160
Query: 138 LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS-GCTP 196
LGK KQ A ELF + EG P+ YT ++ Y + G D+A + MKA+ GC P
Sbjct: 161 LGKCKQPGKAHELFQAMVDEGCAPNLESYTALVSAYSRSGSFDRAFSLLDRMKATPGCRP 220
Query: 197 HKLTFTILIRNLENA 211
T++ILI++ +A
Sbjct: 221 DVQTYSILIKSCLHA 235
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P+ Y+ ++ GK + A E E+ E PD + + G I+
Sbjct: 254 RPNTVTYNTLVDAYGKAGRFAEMESTLLEMLSEKCKPDVWTMNSTLRAFGSSGQIEMMES 313
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
YE +ASG +P+ T+ IL+ + A E + AV
Sbjct: 314 CYEKFQASGISPNIKTYNILLDSYGKAKMYEKMGAV 349
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 47/114 (41%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R D A + + ++ +PD+ YS +I ++L ++ G+ P+T
Sbjct: 198 RSGSFDRAFSLLDRMKATPGCRPDVQTYSILIKSCLHAYDFDKVKDLLADMACGGIRPNT 257
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
Y ++ Y + G + T M + C P T +R ++G+ E++
Sbjct: 258 VTYNTLVDAYGKAGRFAEMESTLLEMLSEKCKPDVWTMNSTLRAFGSSGQIEMM 311
>gi|115434634|ref|NP_001042075.1| Os01g0158100 [Oryza sativa Japonica Group]
gi|9757668|dbj|BAB08187.1| unnamed protein product [Oryza sativa Japonica Group]
gi|15528644|dbj|BAB64665.1| Tha8 -like [Oryza sativa Japonica Group]
gi|113531606|dbj|BAF03989.1| Os01g0158100 [Oryza sativa Japonica Group]
gi|125569105|gb|EAZ10620.1| hypothetical protein OsJ_00452 [Oryza sativa Japonica Group]
Length = 267
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 92/187 (49%), Gaps = 15/187 (8%)
Query: 40 TVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSK----LEEGFQSRICRLLKADL 95
++TCG RD N+ P+ R R LS+EAI AV ++K SS + + + RLLK DL
Sbjct: 31 SITCGPRD-NRGPLQRGRSLSTEAILAVQSLKRLTSSDRSPAAAAAAASTSLGRLLKGDL 89
Query: 96 LDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMA----EELF 151
L + EL+RQ LAL + R E WY+PD +LY+ + + A A E F
Sbjct: 90 LAAMAELQRQGHWSLALAALHVARAEPWYRPDPALYATFVSSSPATEDGAAAVDALVEAF 149
Query: 152 CELKKEG---LDPDTRVY--TEMIGVYLQVGMIDKAMETYE-TMKASGCTPHKLTFTILI 205
E K+ G +D + VY T ++ + G A YE ++ GC + + ++
Sbjct: 150 LEEKERGGGFVDGEEDVYKLTRLVRALVAKGRARAAWRVYEAAVRMGGCEVDEYMYRVMA 209
Query: 206 RNLENAG 212
R ++ G
Sbjct: 210 RGMKRLG 216
>gi|297820044|ref|XP_002877905.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323743|gb|EFH54164.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 439
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 86/166 (51%), Gaps = 11/166 (6%)
Query: 56 SRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVF 115
SR+L ++A AV ++ +S K L +L+ L E ++N ALK+F
Sbjct: 32 SRILRTDA--AVKGIERKANSEKY--------LTLWPKAVLEALDEAIKENRWQSALKIF 81
Query: 116 NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175
+ +RK+ WY+P Y+ + +LG KQ A LF + EGL P VYT +I VY +
Sbjct: 82 HLLRKQHWYEPKCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLIAVYGK 141
Query: 176 VGMIDKAMETYETMKA-SGCTPHKLTFTILIRNLENAGEEELVAAV 220
++DKA T E MK+ S C P TFT+LIR G +LV +
Sbjct: 142 SELLDKAFSTLEYMKSVSDCKPDVFTFTVLIRCCCKLGRFDLVKRI 187
>gi|383129385|gb|AFG45395.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
Length = 67
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 53/67 (79%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+LSL++DMI+MLG+NK+I E + E++KEGL PDTRV TE+IG ++ VGM+ AMET
Sbjct: 1 PNLSLHADMIMMLGRNKRIEGVEAVLLEMQKEGLHPDTRVCTEIIGAFINVGMVQNAMET 60
Query: 186 YETMKAS 192
+E MK +
Sbjct: 61 FELMKQT 67
>gi|255553476|ref|XP_002517779.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543051|gb|EEF44586.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 486
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 94/186 (50%), Gaps = 13/186 (6%)
Query: 22 FHQRPQISLPSGKKIQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEE 81
FH P I + + + G + KK + SR L ++A A+ A++ SSK
Sbjct: 34 FHSDPPILGIHSSNLSSDLIPVGPKRHTKKEL--SRFLRTDA--AIKAIEQKADSSKYN- 88
Query: 82 GFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141
RL +L+ L + ++ ALK+F +RK+ WY+P Y+ +++MLGK
Sbjct: 89 -------RLWPKAVLEALDDAIKERRWKSALKIFELLRKQHWYEPRCQTYTKLLMMLGKC 141
Query: 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA-SGCTPHKLT 200
+Q A LF ++ EGL P VYT ++ Y + G++ KA T + MK+ S C P T
Sbjct: 142 RQPEEARLLFEVMQTEGLRPTIDVYTALVSAYGESGLLAKAFSTVDEMKSVSDCKPDVYT 201
Query: 201 FTILIR 206
+++LI
Sbjct: 202 YSVLIN 207
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL ++ +I G + +I E+ + E + G+ PD + + +I Y + GM +K
Sbjct: 268 PDLFTFNSVIGAYGNSGRIEKMEKWYNEFQLMGISPDIKTFNILIKSYGKAGMYEKINSV 327
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
E MK P +T+ I+I AG+ E
Sbjct: 328 IEFMKKRFFPPTVVTYNIIIETFGRAGDIE 357
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 43/103 (41%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K + KP+ Y ++ K + + +++ + DT + +I Y Q G +
Sbjct: 367 KHLGMKPNAITYCSLVSAYSKAGLLMKVNSILRQVENSDVVLDTTFFNCIINAYGQAGDV 426
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
DK E + M+ C P +TF +I+ G E A+ +
Sbjct: 427 DKMAELFLEMRERECMPDNVTFATMIQAYRGQGMTEAAQALEK 469
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
PD + +IG Y G I+K + Y + G +P TF ILI++ AG E + +V
Sbjct: 268 PDLFTFNSVIGAYGNSGRIEKMEKWYNEFQLMGISPDIKTFNILIKSYGKAGMYEKINSV 327
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 8/102 (7%)
Query: 119 RKEVWYK--------PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
+ E WY PD+ ++ +I GK + +KK P Y +I
Sbjct: 288 KMEKWYNEFQLMGISPDIKTFNILIKSYGKAGMYEKINSVIEFMKKRFFPPTVVTYNIII 347
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ + G I+ E ++TMK G P+ +T+ L+ AG
Sbjct: 348 ETFGRAGDIENMDEYFKTMKHLGMKPNAITYCSLVSAYSKAG 389
>gi|383129381|gb|AFG45391.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
gi|383129382|gb|AFG45392.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
gi|383129383|gb|AFG45393.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
gi|383129384|gb|AFG45394.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
gi|383129386|gb|AFG45396.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
gi|383129387|gb|AFG45397.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
gi|383129388|gb|AFG45398.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
gi|383129389|gb|AFG45399.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
gi|383129390|gb|AFG45400.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
gi|383129391|gb|AFG45401.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
gi|383129392|gb|AFG45402.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
gi|383129393|gb|AFG45403.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
gi|383129394|gb|AFG45404.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
gi|383129395|gb|AFG45405.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
gi|383129396|gb|AFG45406.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
Length = 67
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 53/67 (79%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+LSL++DMI+MLG+NK+I E + E++KEGL PDTRV TE+IG ++ VGM+ AMET
Sbjct: 1 PNLSLHADMIMMLGRNKRIEGVEAVLLEMQKEGLRPDTRVCTEIIGAFINVGMVQNAMET 60
Query: 186 YETMKAS 192
+E MK +
Sbjct: 61 FELMKQT 67
>gi|9758872|dbj|BAB09426.1| unnamed protein product [Arabidopsis thaliana]
Length = 495
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 88/154 (57%), Gaps = 5/154 (3%)
Query: 56 SRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVF 115
+++ S +AI + + KS + ++G + + R + L + +T LR ++ A++VF
Sbjct: 82 TKIASRKAISIILRREATKSIIEKKKGSKKLLPRTVLESLHERITALRWES----AIQVF 137
Query: 116 NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175
+R+++WYKP++ +Y +I+MLGK KQ A ELF E+ EG + VYT ++ Y +
Sbjct: 138 ELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSR 197
Query: 176 VGMIDKAMETYETMKAS-GCTPHKLTFTILIRNL 208
G D A E MK+S C P T++ILI++
Sbjct: 198 SGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSF 231
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 58/140 (41%), Gaps = 23/140 (16%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R D A + ++ +PD+ YS +I + ++L +++++G+ P+T
Sbjct: 197 RSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNT 256
Query: 164 RVYTEMIGVYLQV-----------------------GMIDKAMETYETMKASGCTPHKLT 200
+ EM +Q+ G I+ YE ++SG P+ T
Sbjct: 257 ITFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRT 316
Query: 201 FTILIRNLENAGEEELVAAV 220
F IL+ + +G + ++AV
Sbjct: 317 FNILLDSYGKSGNYKKMSAV 336
>gi|334188265|ref|NP_199684.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635750|sp|Q9FKC3.2|PP424_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g48730, chloroplastic; Flags: Precursor
gi|332008334|gb|AED95717.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 508
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 88/154 (57%), Gaps = 5/154 (3%)
Query: 56 SRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVF 115
+++ S +AI + + KS + ++G + + R + L + +T LR ++ A++VF
Sbjct: 82 TKIASRKAISIILRREATKSIIEKKKGSKKLLPRTVLESLHERITALRWES----AIQVF 137
Query: 116 NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175
+R+++WYKP++ +Y +I+MLGK KQ A ELF E+ EG + VYT ++ Y +
Sbjct: 138 ELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSR 197
Query: 176 VGMIDKAMETYETMKAS-GCTPHKLTFTILIRNL 208
G D A E MK+S C P T++ILI++
Sbjct: 198 SGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSF 231
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 18/125 (14%)
Query: 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ-IAMAEELFCELK 155
D L+++RRQ +P+ Y+ +I GK K + M L L
Sbjct: 242 DLLSDMRRQG-----------------IRPNTITYNTLIDAYGKAKMFVEMESTLIQMLG 284
Query: 156 KEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ PD+ + + G I+ YE ++SG P+ TF IL+ + +G +
Sbjct: 285 EDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYGKSGNYK 344
Query: 216 LVAAV 220
++AV
Sbjct: 345 KMSAV 349
>gi|7940277|gb|AAF70836.1|AC003113_3 F2401.8 [Arabidopsis thaliana]
Length = 281
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 95/187 (50%), Gaps = 31/187 (16%)
Query: 53 MWR-SRVLSSEAIQAVHAMK-LAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDL 110
+WR + +S E + A +K L S +L+ S + RLLK+DL+ L E +RQN++ L
Sbjct: 50 IWRRKKEMSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFL 109
Query: 111 ALKV-----------------------------FNFVRKEVWYKPDLSLYSDMILMLGKN 141
+KV + VR+E+WY+PD+ Y DM++ML +N
Sbjct: 110 CMKVNWSPPVRKFGCFDLEIGAEMEPKTKCGLLYEVVRREIWYRPDMFFYRDMLMMLARN 169
Query: 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF 201
K++ ++++ +LKKE + D + +++ +L + +AM Y M+ S P L F
Sbjct: 170 KKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNELPLEAMRLYGEMRESPDRPLSLPF 229
Query: 202 TILIRNL 208
++++ L
Sbjct: 230 RVILKGL 236
>gi|224104097|ref|XP_002313317.1| predicted protein [Populus trichocarpa]
gi|222849725|gb|EEE87272.1| predicted protein [Populus trichocarpa]
Length = 474
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 94/185 (50%), Gaps = 13/185 (7%)
Query: 23 HQRPQISLPSGKKIQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEG 82
+Q PQ K + GL+ +KK + SR+L +EA A+ A++ +S K
Sbjct: 22 NQDPQFLTIQSSKWCPDPTSTGLQRQSKKEL--SRILRTEA--AIKAIEQKANSKKYN-- 75
Query: 83 FQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNK 142
L +L+ L + ++N+ + ALK+F +RK+ WY+P Y+ +++MLGK +
Sbjct: 76 ------NLWPKAVLEALDDAIKENQWESALKIFELLRKQHWYEPRTKTYTKLLMMLGKCR 129
Query: 143 QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA-SGCTPHKLTF 201
Q LF + +GL P VYT ++ Y + G +DKA MKA S C P T+
Sbjct: 130 QPEEGSFLFEVMLSDGLKPTIDVYTALVSAYGKSGQLDKAFSIVVEMKAISECKPDVYTY 189
Query: 202 TILIR 206
+ILI
Sbjct: 190 SILIN 194
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL ++ +I G +I E+ + E + GL D + + +I Y + GM K
Sbjct: 255 PDLFTFNSIIGAYGSKGRIDKMEKWYTEFQLMGLRQDIKTFNILIRSYGKAGMYGKMRSV 314
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
E M+ +P +T I I AG+ E
Sbjct: 315 LEFMEKRFFSPSIVTHNIFIETFGKAGDIE 344
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K + KP+ Y ++ K I + + +++ + DT + +I Y + G I
Sbjct: 354 KHLGIKPNTVTYCSLVSAYSKAGHIMKVDSILRQVENSDVILDTPFFNCVISAYGRAGDI 413
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRN------LENA-GEEELVAAVRRDCIQYVEFP 231
+K E + M+ C P +TF +I+ +E A G E ++ A R++ FP
Sbjct: 414 EKMSELFLGMEGRKCKPDSITFATMIQAYNAQGMIEAAQGMENMMIATRKNSGMRDGFP 472
>gi|125542133|gb|EAY88272.1| hypothetical protein OsI_09727 [Oryza sativa Indica Group]
Length = 450
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 91/186 (48%), Gaps = 24/186 (12%)
Query: 21 GFHQRPQISLPSGKKIQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLE 80
G +P S P ++ +AL SR+L +EA + + K A +S
Sbjct: 5 GRRHKPPPSAPEAEQPEAL----------------SRILRTEAAVSGVSRKAAAAS---- 44
Query: 81 EGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK 140
+ + RL +L+ L + AL++F +RK+ WYKP Y+ +++MLGK
Sbjct: 45 ---RQQSTRLWPRAVLEALDSAVASCRWESALEIFELLRKQQWYKPRSQTYARLLMMLGK 101
Query: 141 NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA-SGCTPHKL 199
+Q A LF + E L P VYT ++G Y G++D+A+ T E MK + C P +
Sbjct: 102 CRQPGAATALFKVMLSERLKPTVDVYTALVGAYGYSGLLDEALATVEQMKGVADCKPDEY 161
Query: 200 TFTILI 205
TF++LI
Sbjct: 162 TFSVLI 167
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 126 PDLSLYSDMILMLGKN-KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
PD+ + +I G + +I E + E + G++PDT+ + MI Y M DK M
Sbjct: 229 PDIYTMNSIIWAYGNHGNRIHEMERWYSEFQLMGVEPDTQTFNIMIKSYGNAKMHDKMMS 288
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ MK +P +TF I+I + AG E
Sbjct: 289 VLKYMKKHFFSPTVVTFNIIIESFGRAGNIE 319
>gi|27476102|gb|AAO17033.1| Hypothetical protein [Oryza sativa Japonica Group]
gi|108705848|gb|ABF93643.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125584686|gb|EAZ25350.1| hypothetical protein OsJ_09164 [Oryza sativa Japonica Group]
Length = 450
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 90/186 (48%), Gaps = 24/186 (12%)
Query: 21 GFHQRPQISLPSGKKIQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLE 80
G +P S P ++ +AL SR+L +EA + + K A +S
Sbjct: 5 GRRHKPPSSAPEAEQPEAL----------------SRILRTEAAVSGVSRKAAAAS---- 44
Query: 81 EGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK 140
+ RL +L+ L + AL++F +RK+ WYKP Y+ +++MLGK
Sbjct: 45 ---RQHSTRLWPRAVLEALDSAVASCRWEPALEIFELLRKQQWYKPRSQTYARLLMMLGK 101
Query: 141 NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA-SGCTPHKL 199
+Q A LF + E L P VYT ++G Y G++D+A+ T E MK + C P +
Sbjct: 102 CQQPGAATALFKVMLSERLKPTVDVYTALVGAYGYSGLLDQALATVEQMKGVADCKPDEY 161
Query: 200 TFTILI 205
TF++LI
Sbjct: 162 TFSVLI 167
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 126 PDLSLYSDMILMLGKN-KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
PD+ + +I G + +I E + E + G++PDT+ + MI Y M DK M
Sbjct: 229 PDIYTMNSIIWAYGNHGNRIHEMERWYSEFQLMGVEPDTQTFNIMIKSYGNAKMHDKMMS 288
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ MK +P +TF I+I + AG E
Sbjct: 289 VLKYMKKHFFSPTVVTFNIIIESFGRAGNIE 319
>gi|115450301|ref|NP_001048751.1| Os03g0115300 [Oryza sativa Japonica Group]
gi|113547222|dbj|BAF10665.1| Os03g0115300 [Oryza sativa Japonica Group]
Length = 442
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 90/186 (48%), Gaps = 24/186 (12%)
Query: 21 GFHQRPQISLPSGKKIQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLE 80
G +P S P ++ +AL SR+L +EA + + K A +S
Sbjct: 5 GRRHKPPSSAPEAEQPEAL----------------SRILRTEAAVSGVSRKAAAAS---- 44
Query: 81 EGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK 140
+ RL +L+ L + AL++F +RK+ WYKP Y+ +++MLGK
Sbjct: 45 ---RQHSTRLWPRAVLEALDSAVASCRWEPALEIFELLRKQQWYKPRSQTYARLLMMLGK 101
Query: 141 NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA-SGCTPHKL 199
+Q A LF + E L P VYT ++G Y G++D+A+ T E MK + C P +
Sbjct: 102 CQQPGAATALFKVMLSERLKPTVDVYTALVGAYGYSGLLDQALATVEQMKGVADCKPDEY 161
Query: 200 TFTILI 205
TF++LI
Sbjct: 162 TFSVLI 167
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 126 PDLSLYSDMILMLGKN-KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
PD+ + +I G + +I E + E + G++PDT+ + MI Y M DK M
Sbjct: 229 PDIYTMNSIIWAYGNHGNRIHEMERWYSEFQLMGVEPDTQTFNIMIKSYGNAKMHDKMMS 288
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ MK +P +TF I+I + AG E
Sbjct: 289 VLKYMKKHFFSPTVVTFNIIIESFGRAGNIE 319
>gi|297792071|ref|XP_002863920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297309755|gb|EFH40179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 498
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 87/154 (56%), Gaps = 5/154 (3%)
Query: 56 SRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVF 115
+++ S +AI + + K + ++G + + R + L + +T LR ++ AL+VF
Sbjct: 85 TKIASRKAISIILRREATKEIIEKKKGSKKLLPRTVLESLHERITALRWES----ALQVF 140
Query: 116 NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175
+R+++WYKP++ +Y +I+MLGK KQ A ELF E+ EG + VYT ++ Y +
Sbjct: 141 ELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALLSAYSR 200
Query: 176 VGMIDKAMETYETMKAS-GCTPHKLTFTILIRNL 208
G D A E MK+S C P T++ILI++
Sbjct: 201 SGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSF 234
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 58/145 (40%), Gaps = 23/145 (15%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L+ R D A + ++ +PD+ YS +I + +L ++++ G
Sbjct: 195 LSAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVHDLLSDMRRLG 254
Query: 159 LDPDTRVYTEMIGVYLQV-----------------------GMIDKAMETYETMKASGCT 195
+ P+T + EM +Q+ G I+ YE ++SG
Sbjct: 255 IRPNTITFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIE 314
Query: 196 PHKLTFTILIRNLENAGEEELVAAV 220
P+ TF IL+ + +G + ++AV
Sbjct: 315 PNIRTFNILLDSYGKSGNYKKMSAV 339
>gi|413944457|gb|AFW77106.1| hypothetical protein ZEAMMB73_510937 [Zea mays]
Length = 492
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 89/169 (52%), Gaps = 11/169 (6%)
Query: 56 SRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVF 115
S +L EA +AV K + G +R RLL +L+ L + D ALKVF
Sbjct: 79 SVILRREATKAVL--------DKRKPGKGTR--RLLPGTVLEALHDRVAALRWDSALKVF 128
Query: 116 NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175
+R +VWYKP + +Y +I MLGK KQ A +LF + EG P+ + YT ++ Y +
Sbjct: 129 ELMRDQVWYKPHIGIYIKLITMLGKCKQPEKAHQLFQAMIDEGCAPNLQSYTALVSTYSR 188
Query: 176 VGMIDKAMETYETMKAS-GCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
G +A + + MK + GC P T++ILI++ +A + E V ++ D
Sbjct: 189 SGRFREAFDLLDRMKDTPGCQPDVQTYSILIKSCLHAYDFEKVKSLLAD 237
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+ Y+ +I GK + A E ++ + PD + + G I+
Sbjct: 245 PNTVTYNTLIDAYGKAGRFAEMESTLLKMLSQNCKPDVWTMNSTLRAFGSSGQIETMESC 304
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
YE +ASG P+ T+ IL+ + A E + AV
Sbjct: 305 YEKFQASGIVPNIKTYNILLDSYGKAKMYEKMGAV 339
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 38/91 (41%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ YS +I + L ++ + G+ P+T Y +I Y + G +
Sbjct: 209 QPDVQTYSILIKSCLHAYDFEKVKSLLADMARAGIPPNTVTYNTLIDAYGKAGRFAEMES 268
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
T M + C P T +R ++G+ E
Sbjct: 269 TLLKMLSQNCKPDVWTMNSTLRAFGSSGQIE 299
>gi|162462012|ref|NP_001105250.1| thylakoid assembly8 [Zea mays]
gi|45183621|gb|AAS55479.1| Tha8 [Zea mays]
gi|413947428|gb|AFW80077.1| thylakoid assembly8 [Zea mays]
Length = 263
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 103/215 (47%), Gaps = 20/215 (9%)
Query: 32 SGKKIQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMK----LAKSSSKLEEGFQSRI 87
+G K + +++TCG RD N+ P+ R R LS+EAI A+ ++K +S + + +
Sbjct: 22 AGHKPRPVSITCGPRD-NRGPLQRGRSLSTEAILAIQSLKRLTSADRSPAAASAAAATAL 80
Query: 88 CRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILML------GKN 141
RLLKADL+ + EL+RQ LAL + R E WY+PD +LY+ + G+
Sbjct: 81 GRLLKADLVAAMAELQRQGHWSLALAALHIARAEPWYRPDPALYATFVSSAPHSPSGGEG 140
Query: 142 KQIAMAE---ELFCELKKEG---LDPDTRVY--TEMIGVYLQVGMIDKAMETYE-TMKAS 192
A + E F E K G +D + VY T ++ + G A YE ++
Sbjct: 141 DAEAAVDALVEAFLEEKASGGGFVDGEEDVYKLTRLLRALVAKGRGRAAWRVYEAAVRKG 200
Query: 193 GCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227
G + ++ R ++ G +E A V D ++
Sbjct: 201 GLNVDAYVYRVMARGMKRLGFQEEAAEVEEDFAEW 235
>gi|449436321|ref|XP_004135941.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Cucumis sativus]
gi|449514880|ref|XP_004164505.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Cucumis sativus]
Length = 477
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 83/151 (54%), Gaps = 11/151 (7%)
Query: 56 SRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVF 115
SR+L +A A+ A++ +S K L +L+ L E ++N + ALK+F
Sbjct: 65 SRILRRDA--AIKAIERKANSKKYN--------NLWPKAVLEALDEAIQENLWETALKIF 114
Query: 116 NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175
+R++ WY+P Y+ ++++LGK KQ A LF + EGL P VYT ++ Y Q
Sbjct: 115 GLLRQQQWYEPRCQTYTKLLMLLGKCKQPEQASLLFEIMFSEGLKPSIDVYTALVSAYGQ 174
Query: 176 VGMIDKAMETYETMKA-SGCTPHKLTFTILI 205
G++ KA+ T + MK+ S C P T++ILI
Sbjct: 175 SGLLHKAISTVDEMKSISDCKPDVHTYSILI 205
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP+ Y ++ GK+ + + + +++ + PDT ++ +I VY Q G + K E
Sbjct: 371 KPNSVTYCSLVNAYGKSGDLEKVDSILRQIENSDVVPDTPLFNCLINVYGQAGNVRKMGE 430
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ MK + C P +TF +IR L+ G E
Sbjct: 431 LFLEMKENKCVPDGITFATMIRALKAQGMTE 461
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL ++ I G ++QI E+ + E + G++PD Y MI Y + GM DK
Sbjct: 267 PDLITFNTFIRAYGNSEQIEKMEKWYKEFQLMGIEPDIWTYNSMISSYGKAGMYDKMKSV 326
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
M+ +P +T +I + AG E
Sbjct: 327 LNFMEKRFFSPTIVTMNTIIDSFGRAGNIE 356
>gi|356527376|ref|XP_003532287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Glycine max]
Length = 515
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
Query: 89 RLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAE 148
+LL +L+ L E + ALKVF + +++WYKPD +Y +I+MLGK KQ A
Sbjct: 118 KLLPRTVLEALHERVTALRWESALKVFELLHEQIWYKPDTGVYIKLIVMLGKCKQPEKAH 177
Query: 149 ELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS-GCTPHKLTFTILIRN 207
ELF + EG D YT ++ Y + G++DKA E MK + GC P T++IL+++
Sbjct: 178 ELFQAMVDEGCVLDCESYTALLSAYSRSGLLDKAFSLLEEMKNTPGCQPDVQTYSILLKS 237
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCE-LKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
KP+ Y+ +I GK ++ + E + E L PD + + +G I+
Sbjct: 260 KPNTVTYNTLIDAYGKARKFSEMESILVEMLADRYCQPDVWTMNSTLRAFGNIGQIETME 319
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+ YE + +G P+ TF IL+ + A + + ++AV
Sbjct: 320 KCYEKFQNAGIQPNVQTFNILLDSYGKAQDYKKMSAV 356
>gi|45183613|gb|AAS55478.1| Tha8 [Zea mays]
Length = 263
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 103/215 (47%), Gaps = 20/215 (9%)
Query: 32 SGKKIQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMK----LAKSSSKLEEGFQSRI 87
+G K + +++TCG RD N+ P+ R R LS+EAI A+ ++K +S + + +
Sbjct: 22 AGHKPRPVSITCGPRD-NRGPLQRGRSLSTEAILAIQSLKRLTSADRSPAAASAAAATAL 80
Query: 88 CRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILML------GKN 141
RLLKADL+ + EL+RQ LAL + R E WY+PD +LY+ + G+
Sbjct: 81 GRLLKADLVAAMAELQRQGHWSLALAALHIARAEPWYRPDPALYATFVSSAPHSPSGGEG 140
Query: 142 KQIAMAE---ELFCELKKEG---LDPDTRVY--TEMIGVYLQVGMIDKAMETYE-TMKAS 192
A + E F E K G +D + VY T ++ + G A YE ++
Sbjct: 141 DAEAAVDALVEAFLEEKARGGGFVDGEEDVYKLTRLLRALVAKGRGRAAWRVYEAAVRKG 200
Query: 193 GCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227
G + + ++ R ++ G E A V D ++
Sbjct: 201 GLDVDEYVYRVMARGMKRLGFHEEAAEVEADFAEW 235
>gi|449476280|ref|XP_004154693.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Cucumis sativus]
Length = 241
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 64/99 (64%)
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
+A ++N VRKEVWY+PD+ Y DM++ML KNK++ ++++ +LKKEG+ D + ++
Sbjct: 100 IASLLYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDI 159
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
I YL M+ +AM+ Y M+ S P L F ++++ L
Sbjct: 160 IRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGL 198
>gi|361069485|gb|AEW09054.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
Length = 67
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 52/67 (77%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+LSL++DMI+MLG+NK+I E + E++KEGL PDTRV TE+IG ++ V M+ AMET
Sbjct: 1 PNLSLHADMIMMLGRNKRIEGVEAVLLEMQKEGLRPDTRVCTEIIGAFINVDMVQNAMET 60
Query: 186 YETMKAS 192
+E MK +
Sbjct: 61 FELMKQT 67
>gi|357462163|ref|XP_003601363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490411|gb|AES71614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 291
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 79/138 (57%), Gaps = 8/138 (5%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
+ +++ VRKE+WY+PD+ Y DM++ML +NK++ + ++ +LK EG+ D + +++
Sbjct: 148 SFWLYDIVRKEIWYRPDMFFYRDMLVMLARNKRVDETKRVWDDLKGEGVLFDQHTFGDIV 207
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEF 230
YL GM +AM+ YE M+ S P L F ++++ L EL ++ D ++ F
Sbjct: 208 RAYLDSGMPSEAMDIYEEMRQSPEPPLSLPFRVILKGL--IPYPELREKIKDDFLEV--F 263
Query: 231 PERFL----EEVYQKHRK 244
P+ + E+++ H K
Sbjct: 264 PDMIIYDPPEDLFDDHEK 281
>gi|242092154|ref|XP_002436567.1| hypothetical protein SORBIDRAFT_10g004910 [Sorghum bicolor]
gi|241914790|gb|EER87934.1| hypothetical protein SORBIDRAFT_10g004910 [Sorghum bicolor]
Length = 492
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 87/169 (51%), Gaps = 11/169 (6%)
Query: 56 SRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVF 115
S +L EA +AV K + G +R RLL +L+ L E D ALKVF
Sbjct: 79 SVILRREATKAVL--------DKRKPGKGTR--RLLPGTVLEALHERVAALRWDSALKVF 128
Query: 116 NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175
+R +VWY+P + +Y +I MLGK K+ A ELF + EG P+ YT ++ Y +
Sbjct: 129 ELMRDQVWYRPYIGIYIKLITMLGKCKKPEKAHELFQAMIDEGCAPNLESYTALVSAYSR 188
Query: 176 VGMIDKAMETYETMKAS-GCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
G +A + MK + GC P T++ILI++ +A + E V ++ D
Sbjct: 189 SGRFHEAFNLLDRMKDTPGCQPDVKTYSILIKSCLHAYDFEKVKSLLTD 237
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P+ Y+ +I GK ++ E ++ + PD + + G I+
Sbjct: 244 RPNTVTYNTLIDAYGKARRFPEMESTLLKMLSQNCKPDIWTMNSTLRAFGSSGQIETMES 303
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
YE +ASG P+ T+ IL+ + A E + AV
Sbjct: 304 CYEKFQASGIVPNIKTYNILLDSYGKAKMYEKMGAV 339
>gi|242065966|ref|XP_002454272.1| hypothetical protein SORBIDRAFT_04g027800 [Sorghum bicolor]
gi|241934103|gb|EES07248.1| hypothetical protein SORBIDRAFT_04g027800 [Sorghum bicolor]
Length = 519
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 94/183 (51%), Gaps = 13/183 (7%)
Query: 65 QAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTE--------LRRQNELDLALKVFN 116
+A A +L +S + G + R+ +L + TE L R++ L+VF
Sbjct: 52 EAAEAAELVRSVLRRTAGGKERLVPVLDRHVRGVRTEHCFLLFEELGRRDAWLQCLEVFR 111
Query: 117 FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYL-- 174
+++K+ WY D +YS +I ++G+ QI MA LF +++ G PDT VY +IG +L
Sbjct: 112 WMQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHS 171
Query: 175 --QVGMIDKAMETYETMKA-SGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFP 231
+ + KA+ +E MK + C P +T+ IL+R AG+ + V + +D + V P
Sbjct: 172 RDKSKALAKALGYFEKMKCIARCQPTIVTYNILLRAFAQAGDTKQVDILFKDLDESVVSP 231
Query: 232 ERF 234
+ +
Sbjct: 232 DIY 234
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P + Y+ ++ + + LF +L + + PD Y ++ Y + GMI +
Sbjct: 195 QPTIVTYNILLRAFAQAGDTKQVDILFKDLDESVVSPDIYTYNGVLDAYGKNGMIKEMES 254
Query: 185 TYETMKASGCTPHKLTFTILI 205
MK+ C P +TF ILI
Sbjct: 255 VLLRMKSKQCRPDVITFNILI 275
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 39/86 (45%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ ++ GKN I E + +K + PD + +I Y + + DK +
Sbjct: 231 PDIYTYNGVLDAYGKNGMIKEMESVLLRMKSKQCRPDVITFNILIDSYGRKQIFDKMEQV 290
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
++++ S P TF +I N A
Sbjct: 291 FKSLLRSKERPTHPTFNSMITNYGKA 316
>gi|255578090|ref|XP_002529915.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530592|gb|EEF32469.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 636
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 11/153 (7%)
Query: 56 SRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVF 115
S +L EA +A+ K ++SK +LL +L+ L E + ALKVF
Sbjct: 93 SVILRREATKAIIEKKRGPTNSK----------KLLPRTVLEALHERITALRWESALKVF 142
Query: 116 NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175
+R+++WY+P +Y +I+MLGK KQ A ELF + EG D YT ++ Y +
Sbjct: 143 ELLREQIWYRPYSGMYIKLIVMLGKCKQPEKAHELFQAMIHEGCDVSHESYTALLSAYGR 202
Query: 176 VGMIDKAMETYETMKAS-GCTPHKLTFTILIRN 207
G++DKA E MK + C P T++ILI++
Sbjct: 203 SGLLDKAFSLLEEMKRNPDCQPDVHTYSILIKS 235
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 126 PDLSLYSDMILMLGKNKQIA-MAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
P+ Y+ +I GK K M L L ++ +PD + + G I+ +
Sbjct: 259 PNTITYNTLIDAYGKAKMFEEMEATLVKMLSQQNCEPDVWTMNSTLRAFGISGQIETMEK 318
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
YE + +G P +TF +L+ + AG+ + ++AV
Sbjct: 319 CYEKFQGAGIEPSIMTFNVLLDSYGKAGDYKKMSAV 354
>gi|357127065|ref|XP_003565206.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Brachypodium distachyon]
Length = 257
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 97/218 (44%), Gaps = 25/218 (11%)
Query: 30 LPSGKKIQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSR--- 86
LP + I +TCG RD N+ P+ R R LS+EAI AV A+K ++ + +
Sbjct: 21 LPGPRTI----ITCGPRD-NRGPLQRGRSLSTEAIHAVQALKRLTAADRSPPAATAAASA 75
Query: 87 -ICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN---- 141
+ RLL+ADLL + EL+RQ LAL + R E WY+PD LY+ + N
Sbjct: 76 ALGRLLRADLLAAMAELQRQGHWSLALAALHVARAEPWYRPDPELYATFVSSSPSNDPAA 135
Query: 142 -KQIAMAEELFCELKKEG----------LDPDTRVYTEMIGVYLQVGMIDKAMETYE-TM 189
+ E F E K+ G + D T ++ + G A YE +
Sbjct: 136 AAAVDALVEAFIEEKERGAAGGSSEGVWVGEDVYKLTRLVRALVAKGRARAAWRVYEAAV 195
Query: 190 KASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227
+ GC + + ++ + ++ G +E A V D +
Sbjct: 196 RKGGCEVDEYMYRVMAKGMKRLGLDEEAAEVEADLADW 233
>gi|361069487|gb|AEW09055.1| Pinus taeda anonymous locus CL3468Contig1_03 genomic sequence
Length = 67
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 52/67 (77%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+LSL++DMI+MLG+NK++ E + L+KEGL PDTRV TE+IG ++ VGM+ AM+T
Sbjct: 1 PNLSLHADMIMMLGRNKRVEEIESVLLVLQKEGLRPDTRVCTEIIGAFINVGMVQNAMDT 60
Query: 186 YETMKAS 192
+E MK +
Sbjct: 61 FELMKQT 67
>gi|162460162|ref|NP_001106062.1| pentatricopeptide repeat 5 [Zea mays]
gi|154520281|gb|ABS82814.1| pentatricopeptide repeat protein 5 [Zea mays]
gi|413924537|gb|AFW64469.1| pentatricopeptide repeat 5 [Zea mays]
Length = 499
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 101 ELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD 160
EL R++ L VF +++K+ WY D +YS +I ++G+ QI MA LF +++ G
Sbjct: 97 ELGRRDAWLQCLDVFRWMQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCK 156
Query: 161 PDTRVYTEMIGVYL----QVGMIDKAMETYETMKA-SGCTPHKLTFTILIRNLENAGEEE 215
PDT VY +IG +L + + KA+ +E MK C P +T+ IL+R AG+ +
Sbjct: 157 PDTSVYNSLIGAHLHSRDKTKALAKALGYFEKMKCIERCQPTIVTYNILLRAFAQAGDTK 216
Query: 216 LVAAVRRDCIQYVEFPERF 234
V + +D + V P+ +
Sbjct: 217 QVDMLFKDLDESVVSPDVY 235
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 139 GKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK 198
G KQ+ M LF +L + + PD Y ++ Y + GMI + MK++ C P
Sbjct: 213 GDTKQVDM---LFKDLDESVVSPDVYTYNGVLDAYGKNGMIKEMESVLVRMKSTQCRPDV 269
Query: 199 LTFTILI 205
+TF ILI
Sbjct: 270 ITFNILI 276
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ ++ GKN I E + +K PD + +I Y + DK +
Sbjct: 232 PDVYTYNGVLDAYGKNGMIKEMESVLVRMKSTQCRPDVITFNILIDSYGRKQTFDKMEQV 291
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
++++ S P TF +I N A E +V
Sbjct: 292 FKSLLRSKERPTHPTFNSMITNYGRARLREKAESV 326
>gi|357120957|ref|XP_003562190.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Brachypodium distachyon]
Length = 454
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 70/124 (56%), Gaps = 2/124 (1%)
Query: 84 QSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ 143
Q + RL +L+ L + AL++F +RK+ WY+P Y+ +++MLGK +Q
Sbjct: 49 QQQSTRLWPRAVLEALDSAVASCHWESALEIFELMRKQRWYEPRTRTYARLLMMLGKCRQ 108
Query: 144 IAMAEELF-CELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK-ASGCTPHKLTF 201
A LF L +E L P VYT ++G Y GM+D+A+ T E MK A+ C P + TF
Sbjct: 109 PGPAAALFRVMLSEERLAPTVDVYTALVGAYGYSGMLDEALATVELMKGAADCKPDEYTF 168
Query: 202 TILI 205
+ILI
Sbjct: 169 SILI 172
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ + +I G ++ E+ + E + G++PD+R + MI Y + M +K M
Sbjct: 234 PDIYTMNSIIWAYGNRGRVDDMEKWYSEFQLMGVEPDSRTFNIMIKSYGKANMHEKMMMV 293
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ MK +P TF I+I AG+ E
Sbjct: 294 LKYMKRRFFSPTAATFNIIIECFGRAGDIE 323
>gi|302810470|ref|XP_002986926.1| hypothetical protein SELMODRAFT_125134 [Selaginella moellendorffii]
gi|300145331|gb|EFJ12008.1| hypothetical protein SELMODRAFT_125134 [Selaginella moellendorffii]
Length = 458
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 77/143 (53%), Gaps = 1/143 (0%)
Query: 72 LAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLY 131
+A + L + + +LL + LLD L++ ++ + + ALKVF +R + WY+P Y
Sbjct: 1 MASEEASLRKSMARKASKLLPSSLLDILSDRIQRGQWEAALKVFELLRSQQWYQPYAGTY 60
Query: 132 SDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA 191
M+ MLGK K+ A LF + +G P +T ++ Y + ++ AME + M A
Sbjct: 61 IRMLEMLGKCKRPDEAASLFQTMLADGCGPSREAFTALMSAYTRSNLMSTAMEVLQAMNA 120
Query: 192 SG-CTPHKLTFTILIRNLENAGE 213
+ C+P T+++LI++ + G+
Sbjct: 121 TPHCSPDVFTYSLLIKSCCDCGQ 143
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 37/88 (42%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD Y +I GK L ++ + PDT +Y ++ Y + I
Sbjct: 303 RPDSVTYCTLINFYGKFGMQRKLPRLLEQMSMHKVQPDTALYNSVLDAYRRASDISSIDR 362
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ M+ GC P LT+ ILI+ + G
Sbjct: 363 YFAAMQEQGCKPDHLTYNILIQAYRSQG 390
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 5/119 (4%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ R N + A++V + PD+ YS +I Q++ A +L ++ G
Sbjct: 99 MSAYTRSNLMSTAMEVLQAMNATPHCSPDVFTYSLLIKSCCDCGQLSRAADLLADMTARG 158
Query: 159 LDPDTRVYTEMIGVYLQVGMIDK----AMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ P+ Y ++ Y + G +DK A++ ++ S C P + +++ N G+
Sbjct: 159 IQPNRVTYNIILDAYAKCGSLDKLHDLALQMLQSPSPS-CRPDHWSRNAIVKGFGNRGD 216
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Query: 67 VHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYK- 125
++A A +++ + F S C ++ D + T + + + K+ + + +K
Sbjct: 278 INAYGRAGRKTQMLKTFTSMKCGGVRPDSVTYCTLINFYGKFGMQRKLPRLLEQMSMHKV 337
Query: 126 -PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKA 182
PD +LY+ ++ + I+ + F ++++G PD Y +I Y G+ DKA
Sbjct: 338 QPDTALYNSVLDAYRRASDISSIDRYFAAMQEQGCKPDHLTYNILIQAYRSQGLTDKA 395
>gi|356528924|ref|XP_003533047.1| PREDICTED: uncharacterized protein LOC100788379 [Glycine max]
Length = 238
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 97/202 (48%), Gaps = 11/202 (5%)
Query: 25 RPQISLPSGKKIQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSS--KLEEG 82
+PQ S + + + V CG +++ P+ + R+LS EAIQA+ +K ++ +L
Sbjct: 15 KPQPSTATTPRWGYVRVRCGGPRSHRTPLVKGRILSIEAIQAIQTLKRLHRTNPPELTSL 74
Query: 83 FQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNK 142
+ + RL+K+DLL TL EL RQ +AL+VF+ +R E Y DLSLY++M L N
Sbjct: 75 VSNTLTRLIKSDLLATLRELLRQQHCTIALRVFSTLRSE--YGADLSLYAEMAQTLAAND 132
Query: 143 QIAMAEELFCELKKEG---LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG----CT 195
+ L +L E D + +I + + + Y M SG
Sbjct: 133 MTDHLDRLILDLASENEIKCGDDHKGLASLIKAVVAARSRESTVRIYGLMNKSGYGSVTE 192
Query: 196 PHKLTFTILIRNLENAGEEELV 217
P + +L+ L++ GEE L
Sbjct: 193 PDEYVVEVLVSGLKSFGEEALA 214
>gi|359480144|ref|XP_002269420.2| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Vitis vinifera]
gi|297744374|emb|CBI37344.3| unnamed protein product [Vitis vinifera]
Length = 497
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 13/165 (7%)
Query: 44 GLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELR 103
L+ A+KK + S +L EA +AV K ++SK +LL +L+ L E
Sbjct: 66 ALKIASKKAI--SVILRREATKAVIEKKRGPNNSK----------KLLPRTVLEALHERI 113
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ ALKVF +R+++WY+P+ +Y +I+MLGK KQ A LF + EG +
Sbjct: 114 TALRWESALKVFELLREQLWYRPNSGIYIKLIVMLGKCKQPEKAHALFLAMIDEGCVVNH 173
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKAS-GCTPHKLTFTILIRN 207
YT ++ Y + G+ DKA E MK + C P T+++LI++
Sbjct: 174 EAYTALLSAYSRSGLFDKAFSLLEKMKNTPDCQPDVHTYSVLIKS 218
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG-LDPDTRVYTEMIGVYLQVGMIDKAM 183
KP+ Y+ +I GK K+ A E E+ +EG +PD + + G I+
Sbjct: 241 KPNTVTYNTLIDAYGKAKRFAEMESTLLEMLREGKCEPDVWTMNSTLRAFGSSGQIETME 300
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+ YE +++G P+ TF IL+ + A + E ++AV
Sbjct: 301 KCYEKFQSAGIEPNIKTFNILLDSYGKAEKYEKMSAV 337
>gi|449475395|ref|XP_004154439.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Cucumis sativus]
Length = 511
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 84/153 (54%), Gaps = 11/153 (7%)
Query: 56 SRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVF 115
S +L EA +AV K ++SK + R + L D +T LR ++ ALKVF
Sbjct: 93 SVILRREATKAVIERKRGPNNSK------KLLPRTVLEALHDRITTLRWES----ALKVF 142
Query: 116 NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175
+R+++WY+P +Y +I+MLGK KQ A ELF E+ +EG + YT ++ Y +
Sbjct: 143 ELLREQLWYRPYAGMYIKLIVMLGKCKQQEKAYELFQEMIEEGCEVSHESYTALLSAYSR 202
Query: 176 VGMIDKAMETYETMKAS-GCTPHKLTFTILIRN 207
G++D+A MK S C P T++ILI++
Sbjct: 203 SGLLDEAFSILNEMKNSPDCQPDVHTYSILIKS 235
Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCE-LKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
KP+ Y+ I GK K A E + + L +G PD + + + G ++
Sbjct: 258 KPNTITYNTFIDAYGKAKMFAEMESILVDMLNDDGCKPDVWTMNSTLRAFGRSGQLETME 317
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+ YE + +G P TF IL+ + A E ++AV
Sbjct: 318 KCYEKFQEAGIQPSIQTFNILLDSYGKAESYEKMSAV 354
>gi|449443726|ref|XP_004139628.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Cucumis sativus]
Length = 456
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 84/153 (54%), Gaps = 11/153 (7%)
Query: 56 SRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVF 115
S +L EA +AV K ++SK + R + L D +T LR ++ ALKVF
Sbjct: 38 SVILRREATKAVIERKRGPNNSK------KLLPRTVLEALHDRITTLRWES----ALKVF 87
Query: 116 NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175
+R+++WY+P +Y +I+MLGK KQ A ELF E+ +EG + YT ++ Y +
Sbjct: 88 ELLREQLWYRPYAGMYIKLIVMLGKCKQQEKAYELFQEMIEEGCEVSHESYTALLSAYSR 147
Query: 176 VGMIDKAMETYETMKAS-GCTPHKLTFTILIRN 207
G++D+A MK S C P T++ILI++
Sbjct: 148 SGLLDEAFSILNEMKNSPDCQPDVHTYSILIKS 180
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCE-LKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
KP+ Y+ I GK K A E + + L +G PD + + + G ++
Sbjct: 203 KPNTITYNTFIDAYGKAKMFAEMESILVDMLNDDGCKPDVWTMNSTLRAFGRSGQLETME 262
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+ YE + +G P TF IL+ + A E ++AV
Sbjct: 263 KCYEKFQEAGIQPSIQTFNILLDSYGKAESYEKMSAV 299
>gi|326495232|dbj|BAJ85712.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 527
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 77/124 (62%), Gaps = 7/124 (5%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL+VF ++++ +Y P Y ++L+LG++ Q ++A++LF E++++G P +YT +I
Sbjct: 156 ALQVFEMLKEQPFYYPKEGTYMKLLLLLGRSGQPSLAQDLFTEMQQQGCQPTPELYTALI 215
Query: 171 GVYLQVGMIDKAMETYETMKASG-CTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVE 229
G Y + G++D+A++ + MKA+ C P T++ILI+ +A +LV A+ Y E
Sbjct: 216 GAYCRNGLLDEALKLLQDMKANPLCQPDVYTYSILIKAFVDAPRFDLVDAM------YKE 269
Query: 230 FPER 233
ER
Sbjct: 270 MAER 273
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R LD K+ + + + KPD+ + ++ + G + Q+ + E+ + + + G++P+T
Sbjct: 291 RAGRLDDMEKLLSAMLESANSKPDVWTMNIILSLFGNSGQVELMEKWYEKFRGYGIEPET 350
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
R + +IG Y + M DK E M+ T+ +I AG+
Sbjct: 351 RTFNILIGAYGKKRMYDKMSAVMEYMRRLAFPWTTATYNNVIEAFAEAGD 400
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R LD ALK+ ++ +PD+ YS +I + + + ++ E+ + + P+T
Sbjct: 220 RNGLLDEALKLLQDMKANPLCQPDVYTYSILIKAFVDAPRFDLVDAMYKEMAERSVAPNT 279
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETM-KASGCTPHKLTFTILIRNLENAGEEELV 217
++ Y + G +D + M +++ P T I++ N+G+ EL+
Sbjct: 280 VTQNIVLSGYCRAGRLDDMEKLLSAMLESANSKPDVWTMNIILSLFGNSGQVELM 334
>gi|302769874|ref|XP_002968356.1| hypothetical protein SELMODRAFT_67614 [Selaginella moellendorffii]
gi|300164000|gb|EFJ30610.1| hypothetical protein SELMODRAFT_67614 [Selaginella moellendorffii]
Length = 161
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 96/161 (59%), Gaps = 8/161 (4%)
Query: 53 MWRSRV-LSSEAIQAVHAMKLAKSSSK-LEEGFQSRICRLLKADLLDTLTELRRQNELDL 110
+WR + L SEA+QA A+KLAK SK L+E S++ RL+K DLL L L+R +E+DL
Sbjct: 1 LWRGKKDLGSEALQAAAALKLAKRDSKALQEVLASKVGRLVKLDLLALLHALQRHDEVDL 60
Query: 111 ALKV------FNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
A +V F RKEVWYKP + LY DM+ L +N ++ LF +K+E +P
Sbjct: 61 AFQVSPCFLVFERARKEVWYKPSVPLYRDMLKSLARNGRVEGVYSLFETIKQEKAEPHIA 120
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
++TE+I +++ G A++ +E MK S P+ T+ +I
Sbjct: 121 MFTEVIDIFVGSGRFRDALKVFEMMKESEAPPNVRTYRTII 161
>gi|302816774|ref|XP_002990065.1| hypothetical protein SELMODRAFT_130980 [Selaginella moellendorffii]
gi|300142185|gb|EFJ08888.1| hypothetical protein SELMODRAFT_130980 [Selaginella moellendorffii]
Length = 458
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 77/143 (53%), Gaps = 1/143 (0%)
Query: 72 LAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLY 131
+A + L + + +LL + LLD L++ ++ + + ALKVF +R + WY+P Y
Sbjct: 1 MASEEASLRKSMARKASKLLPSSLLDILSDRIQRGQWEAALKVFELLRSQQWYQPYAGTY 60
Query: 132 SDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA 191
++ MLGK K+ A LF + +G P +T ++ Y + ++ AME + M A
Sbjct: 61 IRLLEMLGKCKRPDEAASLFQTMLADGCGPSREAFTALMSAYTRSNLMSTAMEVLQAMNA 120
Query: 192 SG-CTPHKLTFTILIRNLENAGE 213
+ C+P T+++LI++ + G+
Sbjct: 121 TPHCSPDVFTYSLLIKSCCDCGQ 143
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 37/88 (42%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD Y +I GK L ++ + PDT +Y ++ Y + I
Sbjct: 303 RPDSVTYCTLINFYGKFGMQRKLPRLLEQMSMHKVQPDTALYNSVLDAYRRASDISSIDR 362
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ M+ GC P LT+ ILI+ + G
Sbjct: 363 YFAAMQEQGCKPDHLTYNILIQAYRSQG 390
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 5/119 (4%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ R N + A++V + PD+ YS +I Q++ A +L ++ G
Sbjct: 99 MSAYTRSNLMSTAMEVLQAMNATPHCSPDVFTYSLLIKSCCDCGQLSRASDLLADMTARG 158
Query: 159 LDPDTRVYTEMIGVYLQVGMIDK----AMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ P+ Y ++ Y + G +DK A++ ++ S C P + +++ N G+
Sbjct: 159 IQPNRVTYNIILDAYAKSGSLDKLHDLALQMLQSPSPS-CRPDHWSRNAIVKGFGNRGD 216
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Query: 67 VHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYK- 125
++A A +++ + F S C ++ D + T + + + K+ + + +K
Sbjct: 278 INAYGRAGRKTQMLKTFTSMKCGGVRPDSVTYCTLINFYGKFGMQRKLPRLLEQMSMHKV 337
Query: 126 -PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKA 182
PD +LY+ ++ + I+ + F ++++G PD Y +I Y G+ DKA
Sbjct: 338 QPDTALYNSVLDAYRRASDISSIDRYFAAMQEQGCKPDHLTYNILIQAYRSQGLTDKA 395
>gi|302765018|ref|XP_002965930.1| hypothetical protein SELMODRAFT_67616 [Selaginella moellendorffii]
gi|300166744|gb|EFJ33350.1| hypothetical protein SELMODRAFT_67616 [Selaginella moellendorffii]
Length = 161
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 96/161 (59%), Gaps = 8/161 (4%)
Query: 53 MWRSRV-LSSEAIQAVHAMKLAKSSSK-LEEGFQSRICRLLKADLLDTLTELRRQNELDL 110
+WR + L SEA+QA A+KLAK SK L+E S++ RL+K DLL L L+R +E+DL
Sbjct: 1 LWRGKKDLGSEALQAAAALKLAKRDSKALQEVLASKVGRLVKLDLLALLHALQRHDEVDL 60
Query: 111 ALKV------FNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
A +V F RKEVWYKP + LY DM+ L +N ++ LF +K+E +P
Sbjct: 61 AFQVSPCFLVFERARKEVWYKPSVPLYRDMLKSLARNGRVEGVYSLFETIKQEKAEPHIA 120
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
++TE+I +++ G A++ +E MK S P+ T+ +I
Sbjct: 121 MFTEVIDIFVGSGRFRDALKVFEMMKDSEAPPNVRTYRTII 161
>gi|449448168|ref|XP_004141838.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
gi|449491766|ref|XP_004158997.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
Length = 230
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 106/221 (47%), Gaps = 31/221 (14%)
Query: 25 RPQISLPSGKKIQALTVT----------CGLRDANKKPMWRSRVLSSEAIQAVHAMKLAK 74
+ QIS+P I A T T CG RD N+ P+ + R LS EAIQA+ ++K A+
Sbjct: 11 KSQISIP----IPASTATSPVAVSFRVRCGPRD-NRGPLVKGRTLSIEAIQAIQSLKRAE 65
Query: 75 SS--SKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYS 132
S +KL++ + + RLLKADL+ TL EL RQ LAL+VF ++ E Y+ +L LY+
Sbjct: 66 RSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIKSE--YRAELGLYA 123
Query: 133 DMILMLGKNKQIAMAEELFCELKKEGLD------PDTRVYTEMIGVYLQVGMIDKAMETY 186
++ L +N + L +L +G D D + ++I + + + Y
Sbjct: 124 EVAAALSRNGAAEEIDRLVSDL--DGGDGVIEWGDDDKGLIKLIKAVISGNRRESTVRIY 181
Query: 187 ETMKASG----CTPHKLTFTILIRNLENAGEEELVAAVRRD 223
M+ G +L + L GE EL + R+
Sbjct: 182 RMMRRKGWGSMIKADDYMIKVLSKGLRRLGEIELADEINRE 222
>gi|242037185|ref|XP_002465987.1| hypothetical protein SORBIDRAFT_01g049600 [Sorghum bicolor]
gi|241919841|gb|EER92985.1| hypothetical protein SORBIDRAFT_01g049600 [Sorghum bicolor]
Length = 480
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL++F +RK+ WY+P Y+ +++MLGK +Q A LF + E L P VYT ++
Sbjct: 109 ALEIFELLRKQHWYEPRSQTYARLLMMLGKCRQPGPAAALFKAMLSERLRPTADVYTALV 168
Query: 171 GVYLQVGMIDKAMETYETMK-ASGCTPHKLTFTILIRNLENAGEEELVAAV 220
G Y G++D+A+ E MK A+ C P TF++LI + +L+ AV
Sbjct: 169 GAYGYSGLLDEALAAVEQMKGAADCKPDGYTFSVLINCCAKSRRFDLIPAV 219
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ + +I G + + E+ + E + G++PDT+ + MI Y + GM DK M
Sbjct: 266 PDIYTMNSVIGAYGNHGRTDEMEKSYSEFQLMGVEPDTKTFNIMIKSYGKAGMYDKMMSI 325
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ MK +P +TF +I AG E
Sbjct: 326 FRYMKKRFFSPTAVTFNTVIECFGRAGNIE 355
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 4/119 (3%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R +E++ + F + E PD ++ MI GK +F +KK P
Sbjct: 283 RTDEMEKSYSEFQLMGVE----PDTKTFNIMIKSYGKAGMYDKMMSIFRYMKKRFFSPTA 338
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
+ +I + + G I+K + MK G P+ +T+ L+ AG + V + R
Sbjct: 339 VTFNTVIECFGRAGNIEKMEYYFRLMKIQGVKPNPITYCSLVNGYSKAGLLDKVPGIIR 397
>gi|125541147|gb|EAY87542.1| hypothetical protein OsI_08951 [Oryza sativa Indica Group]
Length = 482
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 71/124 (57%), Gaps = 5/124 (4%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
Q E++ + VF +++K+ WY D +YS +I ++G+ QI MA LF +++ G PDT
Sbjct: 85 QQEMNFEVPVFRWMQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCRPDTS 144
Query: 165 VYTEMIGVYL----QVGMIDKAMETYETMKA-SGCTPHKLTFTILIRNLENAGEEELVAA 219
VY +IG +L + + KA+ +E MK C P+ +T+ IL+R AG+ + +
Sbjct: 145 VYNSLIGAHLHSRDKSKALAKALGYFEKMKTIDRCQPNIVTYNILLRAFAQAGDTKQLDI 204
Query: 220 VRRD 223
+ +D
Sbjct: 205 LFKD 208
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ ++ + + LF +L + + PD Y ++ Y + GMI +
Sbjct: 180 QPNIVTYNILLRAFAQAGDTKQLDILFKDLDESPVSPDIYTYNGVMDAYGKNGMITEMES 239
Query: 185 TYETMKASGCTPHKLTFTILI 205
MK++ C P +TF ILI
Sbjct: 240 VLVRMKSNQCRPDVITFNILI 260
Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ ++ GKN I E + +K PD + +I Y + DK +
Sbjct: 216 PDIYTYNGVMDAYGKNGMITEMESVLVRMKSNQCRPDVITFNILIDSYGRKQAFDKMEQV 275
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
++++ S P TF +I N A
Sbjct: 276 FKSLLRSKEKPTHPTFNSMITNYGKA 301
>gi|125583699|gb|EAZ24630.1| hypothetical protein OsJ_08397 [Oryza sativa Japonica Group]
Length = 482
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 71/124 (57%), Gaps = 5/124 (4%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
Q E++ + VF +++K+ WY D +YS +I ++G+ QI MA LF +++ G PDT
Sbjct: 85 QQEMNFEVPVFRWMQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCRPDTS 144
Query: 165 VYTEMIGVYL----QVGMIDKAMETYETMKA-SGCTPHKLTFTILIRNLENAGEEELVAA 219
VY +IG +L + + KA+ +E MK C P+ +T+ IL+R AG+ + +
Sbjct: 145 VYNSLIGTHLHSRDKSKALAKALGYFEKMKTIDRCQPNIVTYNILLRAFAQAGDTKQLDI 204
Query: 220 VRRD 223
+ +D
Sbjct: 205 LFKD 208
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ ++ + + LF +L + + PD Y ++ Y + GMI +
Sbjct: 180 QPNIVTYNILLRAFAQAGDTKQLDILFKDLDESPVSPDIYTYNGVMDAYGKNGMITEMES 239
Query: 185 TYETMKASGCTPHKLTFTILI 205
MK++ C P +TF ILI
Sbjct: 240 VLVRMKSNQCRPDVITFNILI 260
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ ++ GKN I E + +K PD + +I Y + DK +
Sbjct: 216 PDIYTYNGVMDAYGKNGMITEMESVLVRMKSNQCRPDVITFNILIDSYGRKQAFDKMEQV 275
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
++++ S P TF +I N A
Sbjct: 276 FKSLLRSKEKPTHPTFNSMITNYGKA 301
>gi|168016406|ref|XP_001760740.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688100|gb|EDQ74479.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 466
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
Query: 89 RLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAE 148
RL LL++L +QNE + AL+VF VR + WY ++S Y ++ ML + KQ A
Sbjct: 81 RLYPRALLESLDVRIKQNEWESALRVFELVRIQEWYTAEVSTYVKLLTMLARVKQPQAAS 140
Query: 149 ELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA-SGCTPHKLTFTILIRN 207
LF L ++ L P ++T +I V+ + ++ KA E +E M+ GC P K +T +I+
Sbjct: 141 NLFDFLLQDKLRPTLEIFTALITVFTKSNLLKKAFEVFEQMRLFDGCLPDKYAYTTMIKG 200
Query: 208 LENAG 212
+AG
Sbjct: 201 CCDAG 205
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+T + N L A +VF +R PD Y+ MI A++LF E+ +EG
Sbjct: 162 ITVFTKSNLLKKAFEVFEQMRLFDGCLPDKYAYTTMIKGCCDAGLYDQAKKLFNEMMREG 221
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
++P Y +I Y + G+ + M+A+G TP +T+ LIR
Sbjct: 222 VEPTIVTYNTLIFGYGKAGLFAEIEYLLSLMEANGITPDTITWNTLIR 269
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 5/142 (3%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
D A K+FN + +E +P + Y+ +I GK A E L ++ G+ PDT +
Sbjct: 208 DQAKKLFNEMMRE-GVEPTIVTYNTLIFGYGKAGLFAEIEYLLSLMEANGITPDTITWNT 266
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG----EEELVAAVRRDC 224
+I V+ I + + YE + A G ++T LI AG E + +RR
Sbjct: 267 LIRVFGLHNRIPEMEQAYEGLLAQGLMADEVTLNSLIGTYGRAGLYGKMECVTDFMRRYS 326
Query: 225 IQYVEFPERFLEEVYQKHRKTQ 246
+ E+Y K RK +
Sbjct: 327 YPMTTVTYNIIIEIYGKARKIE 348
>gi|302792405|ref|XP_002977968.1| hypothetical protein SELMODRAFT_417822 [Selaginella moellendorffii]
gi|300153989|gb|EFJ20625.1| hypothetical protein SELMODRAFT_417822 [Selaginella moellendorffii]
Length = 478
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 87/177 (49%), Gaps = 2/177 (1%)
Query: 55 RSRVLSSEAIQAVHAMKLAKSS-SKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALK 113
R R + EA+Q V A++ K+ K++ ++ R+LK D+L LT LR+ E ++ALK
Sbjct: 282 RLREFTQEAMQTVTALRHRKNDPDKVDSYLETNAPRMLKKDMLCVLTILRKHREEEIALK 341
Query: 114 VFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY 173
VF + KE WY+P+ LY ++IL+L ++ E+ + P+ ++ ++
Sbjct: 342 VFRIIEKESWYEPNSYLYRELILILTNLRRFDELWTTMDEMDANEMHPNRHMFVPVMSAC 401
Query: 174 LQVGMIDKAMETYETM-KASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVE 229
+ Y M K G H L + LI+ L+ A +EE V D Y++
Sbjct: 402 FDLFDFQNLERFYSRMLKTPGLHLHHLVYRGLIKKLQAAEQEEFAQRVSNDLADYIK 458
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 89/179 (49%), Gaps = 1/179 (0%)
Query: 46 RDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSK-LEEGFQSRICRLLKADLLDTLTELRR 104
R+ + +P + S EA+ V +K A K +E + R R+++ D L L L+
Sbjct: 38 REIDWRPEGKRMFPSKEALALVTEIKRAARGKKDVERLLKDRSARMMRYDYLIVLLTLKD 97
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
Q+++D L++F+ +R+E+WYKP L+ ++ + K+ +I + L L E L+P
Sbjct: 98 QDQVDRVLEIFDVIREEMWYKPSAQLFQSIMEFVIKHDRIEDWKRLLKNLHDEKLEPSEE 157
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
+ + + + K ME YE +KA GC + LI L +AGE E + +D
Sbjct: 158 MLVFPVRKFASLANFAKCMEIYEAIKAIGCKVCPNFYAFLIAKLTSAGELERAEILFKD 216
>gi|302766717|ref|XP_002966779.1| hypothetical protein SELMODRAFT_407937 [Selaginella moellendorffii]
gi|300166199|gb|EFJ32806.1| hypothetical protein SELMODRAFT_407937 [Selaginella moellendorffii]
Length = 468
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 87/177 (49%), Gaps = 2/177 (1%)
Query: 55 RSRVLSSEAIQAVHAMKLAKSS-SKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALK 113
R R + EA+Q V A++ K+ K++ ++ R+LK D+L LT LR+ E ++ALK
Sbjct: 272 RLREFTQEAMQTVTALRHRKNDPDKVDSYLETNAPRMLKKDMLCVLTILRKHREEEIALK 331
Query: 114 VFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY 173
VF + KE WY+P+ LY ++IL+L ++ E+ + P+ ++ ++
Sbjct: 332 VFRIIEKESWYEPNSYLYRELILILTNLRRFDELWTTMDEMDANEMHPNRHMFVPVMSAC 391
Query: 174 LQVGMIDKAMETYETM-KASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVE 229
+ Y M K G H L + LI+ L+ A +EE V D Y++
Sbjct: 392 FDLFDFQNLERFYNRMLKTPGLHLHHLVYRGLIKKLQAAEQEEFAQRVTNDLADYIK 448
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 89/179 (49%), Gaps = 1/179 (0%)
Query: 46 RDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSK-LEEGFQSRICRLLKADLLDTLTELRR 104
R+ + +P + S EA+ V +K A K +E + R R+++ D L L L+
Sbjct: 38 REIDWRPEGKRMFPSKEALALVTEIKRAARGKKDVERLLKDRSARMMRYDYLIVLLTLKD 97
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
Q+++D L++F+ +R+E+WYKP L+ ++ + K+ +I + L L E L+P
Sbjct: 98 QDQVDRVLEIFDVIREEMWYKPSAQLFQSIMEFVIKHDRIEDWKRLLKNLHDEKLEPSEE 157
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
+ + + + K ME YE +KA GC + LI L +AGE E + +D
Sbjct: 158 MLVFPVRKFASLANFAKCMEIYEAIKAIGCKVCPNFYAFLIAKLTSAGELERAEILLKD 216
>gi|414864365|tpg|DAA42922.1| TPA: hypothetical protein ZEAMMB73_846849 [Zea mays]
Length = 485
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL++F +RK+ WY+P Y+ +++MLGK +Q A LF E+ E L P VYT +I
Sbjct: 108 ALEIFELLRKQHWYEPRSQTYARLLMMLGKCRQPGPAAGLFREMLSERLRPTADVYTALI 167
Query: 171 GVYLQVGMIDKAMETYETMK-ASGCTPHKLTFTILIRNLENAGEEELVAAV 220
G Y G+++ A+ E MK A+ C P TF++L+ + +L+ AV
Sbjct: 168 GAYGYSGLLEHALAAVEQMKGAADCKPDGYTFSVLVDCCAKSRRFDLIPAV 218
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ + ++ G + + E+ + E + G++PDT+ + MI Y + GM K M
Sbjct: 265 PDIYTMNSVVGAYGNHGRTDEMEKSYSEFQLMGVEPDTKTFNIMIRSYGKAGMYVKMMSI 324
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ MK +P +TF +I AG+ E
Sbjct: 325 FRYMKKRFFSPTAVTFNTVIECFGRAGDIE 354
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 4/119 (3%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R +E++ + F + E PD ++ MI GK +F +KK P
Sbjct: 282 RTDEMEKSYSEFQLMGVE----PDTKTFNIMIRSYGKAGMYVKMMSIFRYMKKRFFSPTA 337
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
+ +I + + G I+K + MK G P+ +T+ L+ AG + VA V R
Sbjct: 338 VTFNTVIECFGRAGDIEKMEYYFRLMKIQGVKPNPITYCSLVNGYSKAGLLDKVAGVIR 396
>gi|168045822|ref|XP_001775375.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673320|gb|EDQ59845.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 406
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 84/154 (54%), Gaps = 22/154 (14%)
Query: 92 KADLLDTLTELRRQNELDLALKV-FNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEEL 150
+AD L L +Q++ L L+V F +++++ WY+ D +S +I+ +GK KQ+ MA
Sbjct: 3 QADWFALLAALGKQSKWTLILEVTFRWMQEQKWYRLDNGFHSKLIVTMGKAKQLRMAVWF 62
Query: 151 FCELKKEGLDPDTRVYTEMIGVYLQ-----VGMIDKAMETYETMKA-SGCTPHKLTFTIL 204
F E+K+ G PDT +Y +I +LQ +G KA++ +E MK + C P +T+ IL
Sbjct: 63 FKEVKRNGHRPDTSLYNALITAHLQAEDKRIGFA-KALQLFEEMKTKANCKPDLVTYNIL 121
Query: 205 IRNLENAGEEELVAAVRRDCIQYVEFPERFLEEV 238
+R +A RD +Q ERF EE+
Sbjct: 122 LRG----------SAQVRDILQV----ERFFEEM 141
>gi|255570191|ref|XP_002526056.1| conserved hypothetical protein [Ricinus communis]
gi|223534637|gb|EEF36333.1| conserved hypothetical protein [Ricinus communis]
Length = 138
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 63/97 (64%)
Query: 112 LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIG 171
+K+++ VRKE+WY+PD+ Y DM++ML +NK++ + ++ +LK+EG+ D + ++I
Sbjct: 1 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVDEVKLVWQDLKREGVLFDQHTFGDIIR 60
Query: 172 VYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+L + +AM+ YE M+ S P L F ++++ L
Sbjct: 61 AFLDSELPSEAMDIYEEMRQSPEIPLSLPFRVILKGL 97
>gi|357513379|ref|XP_003626978.1| hypothetical protein MTR_8g013670 [Medicago truncatula]
gi|355521000|gb|AET01454.1| hypothetical protein MTR_8g013670 [Medicago truncatula]
Length = 239
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 98/212 (46%), Gaps = 13/212 (6%)
Query: 23 HQRPQISLPSGKKIQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMK----LAKSSSK 78
H P I + + + V CG + + P+ + R LS EAIQA+ +K + +
Sbjct: 15 HSSPSIKPSTPTRRSYIPVHCGGPRSQRGPLIKGRFLSIEAIQAIQTLKRINRINPQTQT 74
Query: 79 LEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILML 138
+ + RL+K+DL+ TL EL RQ + LAL+VF+ VR E Y DL+LY++M+ +L
Sbjct: 75 ETQLQTKTLTRLIKSDLVATLKELLRQEQPTLALRVFSAVRSE--YGADLTLYAEMLKVL 132
Query: 139 GKNKQIAMAEELFCELKKE---GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCT 195
G + L E++ G D D + +I + D + YE +K SG
Sbjct: 133 GNCGMYEDVDRLIEEIEVGGGIGCDEDPKGVLSLIKAVIGAKRRDLLVRVYEMLKRSGWG 192
Query: 196 P----HKLTFTILIRNLENAGEEELVAAVRRD 223
+ +L + G++EL + D
Sbjct: 193 EVVEFDEYVVKVLSNGFKGFGDDELAQEILND 224
>gi|297833394|ref|XP_002884579.1| EMB2750 [Arabidopsis lyrata subsp. lyrata]
gi|297330419|gb|EFH60838.1| EMB2750 [Arabidopsis lyrata subsp. lyrata]
Length = 486
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 82/142 (57%), Gaps = 7/142 (4%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
+ +TL++L + + AL+VF+ +R++ +Y+P Y ++++LGK+ Q A++LF E+
Sbjct: 91 VTETLSDLIAKKQWLQALEVFDMLREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEM 150
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA-SGCTPHKLTFTILIRNLENAGE 213
+EGL+P +YT ++ Y + +ID A +TMK C P T++ L++ +A +
Sbjct: 151 LEEGLEPTVELYTALLAAYTRSNLIDDAFSILDTMKGLPQCQPDVFTYSTLLKACVDASQ 210
Query: 214 EELVAAVRRDCIQYVEFPERFL 235
+LV ++ Y E ER +
Sbjct: 211 FDLVDSL------YKEMDERLI 226
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ + ++ + G +I M E + + + G++P+TR + +IG Y + M DK
Sbjct: 263 KPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSS 322
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
E M+ T+ +I + G+
Sbjct: 323 VMEYMRKLEFPWTTSTYNNIIEAFADVGD 351
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 8/161 (4%)
Query: 58 VLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNF 117
VL ++ Q A KL LEEG + + L LL T R N +D A + +
Sbjct: 132 VLLGKSGQPNRAQKLF--DEMLEEGLEPTV--ELYTALLAAYT---RSNLIDDAFSILDT 184
Query: 118 VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177
++ +PD+ YS ++ Q + + L+ E+ + + P+T ++ Y +VG
Sbjct: 185 MKGLPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVG 244
Query: 178 MIDKAMETYETMKAS-GCTPHKLTFTILIRNLENAGEEELV 217
D+ + M S C P T I++ N G+ +++
Sbjct: 245 RFDQMEKVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMM 285
>gi|297797974|ref|XP_002866871.1| EMB2453 [Arabidopsis lyrata subsp. lyrata]
gi|297312707|gb|EFH43130.1| EMB2453 [Arabidopsis lyrata subsp. lyrata]
Length = 561
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 71/128 (55%), Gaps = 5/128 (3%)
Query: 101 ELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD 160
EL + ++ L+VF +++K+ WY PD +YS +I ++GK Q MA LF E+K G
Sbjct: 106 ELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCR 165
Query: 161 PDTRVYTEMIGVYLQVGMIDKAMET----YETMKA-SGCTPHKLTFTILIRNLENAGEEE 215
PD VY +I +L KA+E ++ MK C P+ +T+ IL+R +G+ +
Sbjct: 166 PDASVYNALITAHLHTRDKAKALEKVRGYFDKMKGMERCQPNVVTYNILLRAFAQSGKVD 225
Query: 216 LVAAVRRD 223
V A+ +D
Sbjct: 226 QVNALFKD 233
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 40/81 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ ++ ++ ++ LF +L + PD + ++ Y + GMI +
Sbjct: 205 QPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEA 264
Query: 185 TYETMKASGCTPHKLTFTILI 205
M+++ C P +TF +LI
Sbjct: 265 VLTRMRSNECKPDIITFNVLI 285
Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ ++ +I GK ++ E+ F L + P + MI Y + MIDKA
Sbjct: 275 KPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEW 334
Query: 185 TYETMKASGCTPHKLTFTILI 205
++ M P +T+ +I
Sbjct: 335 VFKKMNDMNYMPSFITYECMI 355
>gi|357138098|ref|XP_003570635.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic-like [Brachypodium distachyon]
Length = 519
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 101 ELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD 160
EL R + L++F +++K+ WY D +YS +I ++GK QI MA LF +++ G
Sbjct: 85 ELGRHDGWVQCLEIFRWMQKQRWYVADNGIYSKLISVMGKKGQIRMAMWLFSQMRNSGCK 144
Query: 161 PDTRVYTEMIGVYL----QVGMIDKAMETYETMKA-SGCTPHKLTFTILIRNLENAGEEE 215
PDT VY +IG +L + + KA+ ++ MK C P+ +T+ IL+R A + +
Sbjct: 145 PDTSVYNSLIGAHLHSRDKSKALAKALGYFDKMKTIERCQPNIVTYNILLRACARASDAK 204
Query: 216 LVAAVRRDCIQYVEFPERF 234
V + +D + + P+ +
Sbjct: 205 QVEILFKDLDESLVTPDIY 223
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ ++ + E LF +L + + PD Y +I Y + GMI +
Sbjct: 184 QPNIVTYNILLRACARASDAKQVEILFKDLDESLVTPDIYTYNGVIDGYGKNGMIKEMES 243
Query: 185 TYETMKASGCTPHKLTFTILI 205
MK+ C P +TF ILI
Sbjct: 244 VLVRMKSKQCRPDVITFNILI 264
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I GKN I E + +K + PD + +I Y + + DK +
Sbjct: 220 PDIYTYNGVIDGYGKNGMIKEMESVLVRMKSKQCRPDVITFNILIDSYGRKQIFDKMEQV 279
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
++++ S P TF +I N A +E +V
Sbjct: 280 FKSLLRSKERPTHPTFNSMITNYGKARLKEKAESV 314
>gi|388505356|gb|AFK40744.1| unknown [Medicago truncatula]
Length = 263
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Query: 23 HQRPQISLPSGKKIQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMK----LAKSSSK 78
H P I + + + V CG + + P+ + R LS EAIQA+ +K + +
Sbjct: 15 HSSPSIKPSTPTRRSYIPVHCGGPRSQRGPLIKGRFLSIEAIQAIQTLKRINRINPQTQT 74
Query: 79 LEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILML 138
+ + RL+K+DL+ TL EL RQ + LAL+VF+ VR E Y DL+LY++M+ +L
Sbjct: 75 ETQLQTKTLTRLIKSDLVATLKELLRQEQPTLALRVFSAVRSE--YGADLTLYAEMLKVL 132
Query: 139 GKNKQIAMAEELFCELKKE---GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG 193
G + L E++ G D D + +I + D + YE +K SG
Sbjct: 133 GNCGMYEDVDRLIEEIEVGGGIGCDEDPKGVLSLIKAVIGAKRRDLLVRVYEMLKRSG 190
>gi|326522967|dbj|BAJ88529.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 539
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 76/137 (55%), Gaps = 5/137 (3%)
Query: 101 ELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD 160
EL R++ L++F +++K+ WY D +YS +I ++G+ QI MA LF +++ G
Sbjct: 95 ELGRRDGWVQCLEIFRWMQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCK 154
Query: 161 PDTRVYTEMIGVYL----QVGMIDKAMETYETMKA-SGCTPHKLTFTILIRNLENAGEEE 215
PDT VY +IG +L + + KA+ ++ MK C P+ +T+ IL+R A + +
Sbjct: 155 PDTSVYNSLIGAHLHSRDKSKALVKALGYFDKMKGMERCQPNIVTYNILLRACARASDTK 214
Query: 216 LVAAVRRDCIQYVEFPE 232
V + +D + + P+
Sbjct: 215 QVDILFKDLDESIVSPD 231
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL F+ ++ +P++ Y+ ++ + + LF +L + + PD Y +I
Sbjct: 180 ALGYFDKMKGMERCQPNIVTYNILLRACARASDTKQVDILFKDLDESIVSPDIYTYNGVI 239
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y + GMI + MK+ C P +TF ILI
Sbjct: 240 DGYGKNGMITEMESVLVRMKSKQCRPDVITFNILI 274
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I GKN I E + +K + PD + +I Y + DK +
Sbjct: 230 PDIYTYNGVIDGYGKNGMITEMESVLVRMKSKQCRPDVITFNILIDSYGRKQTFDKMEQV 289
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
++++ S P TF +I N A
Sbjct: 290 FKSLLRSKERPTHPTFNSMITNYGKA 315
>gi|356511125|ref|XP_003524280.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic-like [Glycine max]
Length = 503
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 20/205 (9%)
Query: 41 VTCGLRDANKKPMWRS------RVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKAD 94
++CG R KK S R+L+S+ L K+ +K + +++ C LL
Sbjct: 25 ISCGARPKRKKSNHNSEAQELVRLLTSKISNDKEP--LLKTLNKYVKQVRTQHCFLL--- 79
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
EL + + L+VF +++K+ WY D +YS +I ++GK Q MA LF E+
Sbjct: 80 ----FEELAKHDNWLQCLEVFRWMQKQRWYIADNGIYSKLISVMGKKGQTRMAMWLFSEM 135
Query: 155 KKEGLDPDTRVYTEMIGVYL----QVGMIDKAMETYETMKA-SGCTPHKLTFTILIRNLE 209
+ G PDT VY +I +L + + KA+ ++ MK C P+ +T+ IL+R
Sbjct: 136 RNTGCRPDTSVYNALITAHLHSRDKTKALAKAIGYFQKMKGMERCKPNIVTYNILLRAFA 195
Query: 210 NAGEEELVAAVRRDCIQYVEFPERF 234
A E V ++ +D + + P+ +
Sbjct: 196 QARNVEQVNSLFKDLDESIVSPDIY 220
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ Y+ ++ + + + LF +L + + PD + ++ Y + GMI +
Sbjct: 181 KPNIVTYNILLRAFAQARNVEQVNSLFKDLDESIVSPDIYTFNGVMDAYGKNGMIREMEA 240
Query: 185 TYETMKASGCTPHKLTFTILI 205
MK++ C P +TF +LI
Sbjct: 241 VLARMKSNQCKPDLITFNLLI 261
>gi|15235161|ref|NP_195672.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75266408|sp|Q9SV96.1|PP358_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g39620, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 2453; Flags: Precursor
gi|5042178|emb|CAB44697.1| putative protein [Arabidopsis thaliana]
gi|7270946|emb|CAB80625.1| putative protein [Arabidopsis thaliana]
gi|58013022|gb|AAW62964.1| chloroplast embryo-defective 2453 [Arabidopsis thaliana]
gi|332661694|gb|AEE87094.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 563
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 100/211 (47%), Gaps = 19/211 (9%)
Query: 25 RPQISLPSGKKIQALTVTCGLRDANKKPMWR------SRVLSSEAIQAVHAMK-LAKSSS 77
R ++L ++ +TCG + +K R +RVL + + + L K+
Sbjct: 30 RFSVNLGDARRSTRTRITCGAISSRRKLAERESAERENRVLVRSLMSRISDREPLVKTLD 89
Query: 78 KLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILM 137
K + + C LL EL + ++ L+VF +++K+ WY PD +YS +I +
Sbjct: 90 KYVKVVRCDHCFLL-------FEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISV 142
Query: 138 LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY----ETMKA-S 192
+GK Q MA LF E+K G PD VY +I +L KA+E + MK
Sbjct: 143 MGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIE 202
Query: 193 GCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
C P+ +T+ IL+R +G+ + V A+ +D
Sbjct: 203 RCQPNVVTYNILLRAFAQSGKVDQVNALFKD 233
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 40/81 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ ++ ++ ++ LF +L + PD + ++ Y + GMI +
Sbjct: 205 QPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEA 264
Query: 185 TYETMKASGCTPHKLTFTILI 205
M+++ C P +TF +LI
Sbjct: 265 VLTRMRSNECKPDIITFNVLI 285
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ ++ +I GK ++ E+ F L + P + MI Y + MIDKA
Sbjct: 275 KPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEW 334
Query: 185 TYETMKASGCTPHKLTFTILI 205
++ M P +T+ +I
Sbjct: 335 VFKKMNDMNYIPSFITYECMI 355
>gi|255582522|ref|XP_002532046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528289|gb|EEF30336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 478
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 75/139 (53%), Gaps = 5/139 (3%)
Query: 101 ELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD 160
EL R+++ L+VF +++K+ WY D +YS +I ++GK Q MA LF E++ G
Sbjct: 105 ELGRRDKWLQCLEVFRWMQKQRWYIADSGVYSKLISVMGKKGQTRMAMWLFSEMRNSGCR 164
Query: 161 PDTRVYTEMIGVYL----QVGMIDKAMETYETMKA-SGCTPHKLTFTILIRNLENAGEEE 215
PD+ VY +I +L + + KA+ +E MK C P+ +T+ IL+R A
Sbjct: 165 PDSSVYNALITAHLHSKDKAKALIKALGYFEKMKGMQRCQPNVVTYNILLRAFAQARNVN 224
Query: 216 LVAAVRRDCIQYVEFPERF 234
V A+ +D Q + P+ +
Sbjct: 225 QVNALFKDLDQSIVSPDIY 243
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ ++ + + + LF +L + + PD Y ++ Y + GMI +
Sbjct: 204 QPNVVTYNILLRAFAQARNVNQVNALFKDLDQSIVSPDIYTYNGVMDAYGKNGMIREMES 263
Query: 185 TYETMKASGCTPHKLTFTILI 205
MK++ C P +TF +LI
Sbjct: 264 VLSRMKSNQCKPDIITFNLLI 284
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 43/94 (45%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y P+ Y +I+M G ++ A E+F ++ + G + M+ VY G+ +A
Sbjct: 343 YTPNFITYESLIMMYGFCDSVSKAREIFDDMIESGKEVKVSTLNAMLDVYCLNGLPMEAD 402
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
++ + G P T+ +L + A ++LV
Sbjct: 403 LLFDNARNVGLLPDSTTYKLLYKAYTKANMKKLV 436
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 4/126 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LL + R N+++ K + + PD+ Y+ ++ GKN I E + +
Sbjct: 213 LLRAFAQARNVNQVNALFKDLD----QSIVSPDIYTYNGVMDAYGKNGMIREMESVLSRM 268
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
K PD + +I Y + DK + ++++ S P TF +I N A ++
Sbjct: 269 KSNQCKPDIITFNLLIDSYGKKQDFDKMEQVFKSLLHSKERPTLPTFNSMITNYGKARQK 328
Query: 215 ELVAAV 220
E +V
Sbjct: 329 ENAESV 334
>gi|334187332|ref|NP_001190970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332661695|gb|AEE87095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 510
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 100/211 (47%), Gaps = 19/211 (9%)
Query: 25 RPQISLPSGKKIQALTVTCGLRDANKKPMWR------SRVLSSEAIQAVHAMK-LAKSSS 77
R ++L ++ +TCG + +K R +RVL + + + L K+
Sbjct: 30 RFSVNLGDARRSTRTRITCGAISSRRKLAERESAERENRVLVRSLMSRISDREPLVKTLD 89
Query: 78 KLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILM 137
K + + C LL EL + ++ L+VF +++K+ WY PD +YS +I +
Sbjct: 90 KYVKVVRCDHCFLL-------FEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISV 142
Query: 138 LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY----ETMKA-S 192
+GK Q MA LF E+K G PD VY +I +L KA+E + MK
Sbjct: 143 MGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIE 202
Query: 193 GCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
C P+ +T+ IL+R +G+ + V A+ +D
Sbjct: 203 RCQPNVVTYNILLRAFAQSGKVDQVNALFKD 233
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 40/81 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ ++ ++ ++ LF +L + PD + ++ Y + GMI +
Sbjct: 205 QPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEA 264
Query: 185 TYETMKASGCTPHKLTFTILI 205
M+++ C P +TF +LI
Sbjct: 265 VLTRMRSNECKPDIITFNVLI 285
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ ++ +I GK ++ E+ F L + P + MI Y + MIDKA
Sbjct: 275 KPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEW 334
Query: 185 TYETMKASGCTPHKLTFTILI 205
++ M P +T+ +I
Sbjct: 335 VFKKMNDMNYIPSFITYECMI 355
>gi|224069806|ref|XP_002303044.1| predicted protein [Populus trichocarpa]
gi|222844770|gb|EEE82317.1| predicted protein [Populus trichocarpa]
Length = 485
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 11/153 (7%)
Query: 56 SRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVF 115
S +L EA +AV K ++SK +LL +L+ L E AL+VF
Sbjct: 78 SVILRREATKAVIEKKRGPTNSK----------KLLPQTVLEALHERITALRWASALEVF 127
Query: 116 NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175
+R+++WY+P +Y +I+MLGK KQ A +LF + EG YT ++ Y +
Sbjct: 128 ELLREQLWYRPYAGMYVKLIVMLGKCKQPDKAHQLFQAMIDEGCAVTHESYTALLSAYGR 187
Query: 176 VGMIDKAMETYETMKAS-GCTPHKLTFTILIRN 207
G+ DKA E MK + C P T++ILI++
Sbjct: 188 SGLFDKAFSIMEEMKNTPDCRPDVHTYSILIKS 220
>gi|357157771|ref|XP_003577908.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Brachypodium distachyon]
Length = 512
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 69/114 (60%), Gaps = 1/114 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL+VF ++++ +Y P Y ++L+LG++ Q A+A LF +++++G P +YT +I
Sbjct: 141 ALQVFEMLKEQPFYYPKEGTYMKLLLLLGRSGQPALAHRLFADMQQQGCQPTPELYTALI 200
Query: 171 GVYLQVGMIDKAMETYETMKASG-CTPHKLTFTILIRNLENAGEEELVAAVRRD 223
Y + G++D A+ MKA+ C P T++ LI+ L +A +LV A+ ++
Sbjct: 201 AAYCRSGLLDDALRLLGDMKAAPLCQPDVYTYSTLIKALVDASRFDLVDAMYKE 254
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 54/117 (46%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L+ R +D K+ + + KPD+ + ++ + G + Q+ + E+ + + + G
Sbjct: 271 LSGYGRAGRMDDMEKLLSAMLDSTASKPDVWTMNIILSLFGNSGQVDLMEKWYEKFRGYG 330
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
++P+TR +IG Y + M DK E M+ T+ +I AG+E+
Sbjct: 331 IEPETRTLNILIGAYGKKRMYDKMSAVMEFMRKLAFPWTTSTYNNVIEAFAEAGDEK 387
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R LD AL++ ++ +PD+ YS +I L + + + ++ E+ + G+ P+T
Sbjct: 205 RSGLLDDALRLLGDMKAAPLCQPDVYTYSTLIKALVDASRFDLVDAMYKEMAERGVAPNT 264
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETM-KASGCTPHKLTFTILIRNLENAGEEELV 217
++ Y + G +D + M ++ P T I++ N+G+ +L+
Sbjct: 265 VTQNIVLSGYGRAGRMDDMEKLLSAMLDSTASKPDVWTMNIILSLFGNSGQVDLM 319
>gi|297815036|ref|XP_002875401.1| hypothetical protein ARALYDRAFT_905030 [Arabidopsis lyrata subsp.
lyrata]
gi|297321239|gb|EFH51660.1| hypothetical protein ARALYDRAFT_905030 [Arabidopsis lyrata subsp.
lyrata]
Length = 220
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 102/193 (52%), Gaps = 11/193 (5%)
Query: 35 KIQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLA-KSSSKLEEGFQSRICRLLKA 93
K + +++ CG RD N+ P+ + R+LS+EAIQ++ ++K A ++ S + + + RL+K+
Sbjct: 23 KRRLVSIRCGPRD-NRGPLLKGRILSTEAIQSIQSLKRAHRTGSSISLTLRP-LRRLIKS 80
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKP-DLSLYSDMILMLGKNKQIAMAEELFC 152
DL+ L EL RQ+ LA+ V + +R E Y P DL LY+D++ L +NK+ + L
Sbjct: 81 DLVSVLRELLRQDYCTLAVHVLSTLRSE--YPPLDLVLYADIVNALSRNKEFDEIDRLIG 138
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH-----KLTFTILIRN 207
E++ D + ++I + + + Y ++ SG + +L +
Sbjct: 139 EIEIIDQRSDDKALAKLIRAVVGAERRESVVRVYTLLRESGWGSESWEADEYVAEVLSKG 198
Query: 208 LENAGEEELVAAV 220
L GE++L A V
Sbjct: 199 LLRLGEQDLAAQV 211
>gi|356528509|ref|XP_003532845.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic-like [Glycine max]
Length = 580
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 102/209 (48%), Gaps = 25/209 (11%)
Query: 41 VTCGLRDANKKPMWRSRVLSSEAIQAVHAMK----------LAKSSSKLEEGFQSRICRL 90
++CG + P + L+SEA + V + L K+ +K + +++ C L
Sbjct: 85 ISCG---GPRPPKSKKSNLNSEAQELVRLLTSKIRSNDKEVLLKTLNKYVKQVRTQHCFL 141
Query: 91 LKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEEL 150
L EL + + L+VF +++K+ WY D +YS +I ++GK Q MA L
Sbjct: 142 L-------FEELGKHDNWLQCLEVFRWMQKQRWYIADNGIYSKLISVMGKKGQTRMAMWL 194
Query: 151 FCELKKEGLDPDTRVYTEMIGVYL----QVGMIDKAMETYETMKA-SGCTPHKLTFTILI 205
F E++ G PDT VY +I +L ++ + KA+ ++ MK C P+ +T+ IL+
Sbjct: 195 FSEMRNTGCRPDTSVYNALITAHLRSRDKIKALAKAIGYFQKMKGMERCKPNIVTYNILL 254
Query: 206 RNLENAGEEELVAAVRRDCIQYVEFPERF 234
R A E V ++ +D + + P+ +
Sbjct: 255 RAFAQARNVEQVNSLFKDLDESIVSPDIY 283
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ Y+ ++ + + + LF +L + + PD + ++ Y + GMI +
Sbjct: 244 KPNIVTYNILLRAFAQARNVEQVNSLFKDLDESIVSPDIYTFNGVMDAYGKNGMIREMEA 303
Query: 185 TYETMKASGCTPHKLTFTILI 205
MK++ C P +TF +LI
Sbjct: 304 VLARMKSNQCKPDLITFNLLI 324
>gi|168045050|ref|XP_001774992.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673739|gb|EDQ60258.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 385
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 113 KVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGV 172
+VF VR + WY DLS Y ++ ML K KQ A A +F L ++ L P T ++T ++ V
Sbjct: 19 QVFELVRAQEWYTADLSTYLKLLTMLAKAKQAAEASNVFDCLLEDKLRPTTAIFTALLTV 78
Query: 173 YLQVGMIDKAMETYETMK-ASGCTPHKLTFTILIRNLENAG 212
+ Q KA+E +E+M+ GC P K T+T +I+ AG
Sbjct: 79 FTQSNQFKKALEIFESMRLYEGCVPDKYTYTAMIKGCCEAG 119
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 49/108 (45%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
LT + N+ AL++F +R PD Y+ MI + A ++F E+ EG
Sbjct: 76 LTVFTQSNQFKKALEIFESMRLYEGCVPDKYTYTAMIKGCCEAGLYVQARKIFDEMMIEG 135
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
+ P Y +I Y + G+ + TM+A+ P +T+ LIR
Sbjct: 136 VKPSIVTYNILIHGYGKAGLFREVERVLSTMEANNVAPDTVTWNTLIR 183
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD ++ +I + G N +I E+ + L ++GL PD +I Y G+ +K
Sbjct: 173 PDTVTWNTLIRVFGLNCKIPEMEQAYEGLLRQGLQPDMVTLNSLISAYGTAGLFEKMESV 232
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ M+ ++T+ I++ AG
Sbjct: 233 TQYMQRYNYPMTRITYNIIMEAYGRAG 259
>gi|15230719|ref|NP_187294.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207273|sp|Q9SQU6.1|PP216_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g06430, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 2750; Flags: Precursor
gi|6437546|gb|AAF08573.1|AC011623_6 unknown protein [Arabidopsis thaliana]
gi|20466300|gb|AAM20467.1| unknown protein [Arabidopsis thaliana]
gi|30387593|gb|AAP31962.1| At3g06430 [Arabidopsis thaliana]
gi|332640870|gb|AEE74391.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 486
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 82/142 (57%), Gaps = 7/142 (4%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
+ +TL++L + + AL+VF+ +R++ +Y+P Y ++++LGK+ Q A++LF E+
Sbjct: 91 VTETLSDLIAKKQWLQALEVFDMLREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEM 150
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA-SGCTPHKLTFTILIRNLENAGE 213
+EGL+P +YT ++ Y + +ID A + MK+ C P T++ L++ +A +
Sbjct: 151 LEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQCQPDVFTYSTLLKACVDASQ 210
Query: 214 EELVAAVRRDCIQYVEFPERFL 235
+LV ++ Y E ER +
Sbjct: 211 FDLVDSL------YKEMDERLI 226
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ + ++ + G +I M E + + + G++P+TR + +IG Y + M DK
Sbjct: 263 KPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSS 322
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
E M+ T+ +I + G+
Sbjct: 323 VMEYMRKLEFPWTTSTYNNIIEAFADVGD 351
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 8/163 (4%)
Query: 58 VLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNF 117
VL ++ Q A KL LEEG + + L LL T R N +D A + +
Sbjct: 132 VLLGKSGQPNRAQKLF--DEMLEEGLEPTV--ELYTALLAAYT---RSNLIDDAFSILDK 184
Query: 118 VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177
++ +PD+ YS ++ Q + + L+ E+ + + P+T ++ Y +VG
Sbjct: 185 MKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVG 244
Query: 178 MIDKAMETYETMKAS-GCTPHKLTFTILIRNLENAGEEELVAA 219
D+ + M S C P T I++ N G+ +++ +
Sbjct: 245 RFDQMEKVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMES 287
>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Brachypodium distachyon]
Length = 925
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L + LAL++FN + K P+L YS +I LG+ ++ AEE+F ELKK+G
Sbjct: 617 INGLCNNGAIPLALEMFNKMVKHGCL-PNLHTYSSLIQALGQEGRVEEAEEMFSELKKQG 675
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210
L PD Y +MI V + G +D+A + M +GC P T+ +LI+ L+N
Sbjct: 676 LIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQN 727
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L +L + N + ++ + +E +P+L +Y+ +I L K+ + AE + ++ K G
Sbjct: 200 LIQLNKLNMTSTVMDRYHQILRE-GLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSG 258
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ PDT YT MI Y + +D A E + M GC P+ T++ LI L N+G
Sbjct: 259 MKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSG 312
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
+ D+A++V ++ +PD Y+++I K ++ +A +F E+ GL P+ Y
Sbjct: 485 DTDVAIRVLELMKAN-GCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTY 543
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN----AGEEEL 216
T +I Y + +D A E MK SGC P+ T+ +LI L +G EEL
Sbjct: 544 TALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEEL 597
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R +LD A ++FN + +E +P+ + YS +I L + ++ A + E+ + G+ P
Sbjct: 275 RNRDLDSAFEIFNRMDEE-GCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTV 333
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+T I +G I+ A + + MK GC P+ T+T LI
Sbjct: 334 HTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLI 375
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 6/137 (4%)
Query: 79 LEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILML 138
L EG Q + L+ +++ L + + A + N V K KPD Y+ MIL
Sbjct: 220 LREGLQPNL--LIYNSVINALC---KDGNVRDAESIINKVFKS-GMKPDTFTYTSMILGY 273
Query: 139 GKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK 198
+N+ + A E+F + +EG +P+ Y+ +I G +++A++ M G P
Sbjct: 274 CRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTV 333
Query: 199 LTFTILIRNLENAGEEE 215
TFT I L + G E
Sbjct: 334 HTFTAPIVALCDMGRIE 350
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ +LD A ++ +++ +P++ Y+ +I L K + AEEL + +E + PD
Sbjct: 552 KDEKLDCAARMLERMKRS-GCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDV 610
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
Y+ +I G I A+E + M GC P+ T++ LI+ L G E
Sbjct: 611 VTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVE 662
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+ Y+ ++ +L +N +I A +F + K G P+T Y E+I Y +G +KAM
Sbjct: 398 PNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSM 457
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
M TP +T+ I+I+ ++G+ ++ V
Sbjct: 458 LTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRV 492
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A K+F ++K+ KP++ Y+ +I + MA LF + ++G+ P+T Y ++
Sbjct: 352 AWKIFIDMKKK-GCKPNVYTYTSLI---SGQRVSRMAIGLFHRMSRDGVVPNTVTYNALM 407
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
V ++ ID A+ + M GC P+ ++ LIR G+ E
Sbjct: 408 NVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTE 452
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
E+D AL VFN + K P+ S Y+++I A + + K P Y
Sbjct: 415 EIDSALIVFNMMGKHGCL-PNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTY 473
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+I Y G D A+ E MKA+GC P + ++T LI + EL + +
Sbjct: 474 NIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGM 527
>gi|15232255|ref|NP_189412.1| uncharacterized protein [Arabidopsis thaliana]
gi|9294480|dbj|BAB02699.1| unnamed protein product [Arabidopsis thaliana]
gi|49660179|gb|AAT68380.1| hypothetical protein At3g27750 [Arabidopsis thaliana]
gi|60547779|gb|AAX23853.1| hypothetical protein At3g27750 [Arabidopsis thaliana]
gi|332643839|gb|AEE77360.1| uncharacterized protein [Arabidopsis thaliana]
Length = 222
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 87/158 (55%), Gaps = 8/158 (5%)
Query: 39 LTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDT 98
+++ CG RD N+ P+ + R+LS+EAIQ++ ++K A + + RL+K+DL+
Sbjct: 29 VSIRCGPRD-NRGPLLKGRILSTEAIQSIQSLKRAHRTGVSLSLTLRPLRRLIKSDLISV 87
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKP-DLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
L EL RQ+ LA+ V + +R E Y P DL LY+D++ L +NK+ + L E+ +
Sbjct: 88 LRELLRQDYCTLAVHVLSTLRTE--YPPLDLVLYADIVNALTRNKEFDEIDRLIGEI--D 143
Query: 158 GLD--PDTRVYTEMIGVYLQVGMIDKAMETYETMKASG 193
G+D D + ++I + + + Y M+ SG
Sbjct: 144 GIDQRSDDKALAKLIRAVVGAERRESVVRVYTLMRESG 181
>gi|195616496|gb|ACG30078.1| PPR2 [Zea mays]
Length = 580
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL+VF ++++ +Y P Y +I++LG++ Q A +LF E+ ++G P +YT +I
Sbjct: 209 ALQVFEMLKEQPFYHPKEGTYMKLIVLLGRSGQPTRAHQLFDEMLQQGCQPTPELYTALI 268
Query: 171 GVYLQVGMIDKAMETYETMKASG-CTPHKLTFTILIRNLENAGEEELVAAVRRD 223
G Y + G++D+A++ MK+S C P T++ +I+ +A +L A+ +D
Sbjct: 269 GAYCRSGLLDEALQLLNDMKSSPLCQPDVYTYSTIIKACVDAARFDLTDAMYKD 322
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R LD AL++ N ++ +PD+ YS +I + + + ++ ++ + + P+T
Sbjct: 273 RSGLLDEALQLLNDMKSSPLCQPDVYTYSTIIKACVDAARFDLTDAMYKDMAERSISPNT 332
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKAS-GCTPHKLTFTILIRNLENAGEEELV 217
++ Y + G +D M S C P T I++ N GE EL+
Sbjct: 333 VTQNIVLSGYGKAGRLDDMERVLSDMLDSVSCKPDVWTMNIILSLFGNRGEVELM 387
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 51/115 (44%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L+ + LD +V + + V KPD+ + ++ + G ++ + E + + + G
Sbjct: 339 LSGYGKAGRLDDMERVLSDMLDSVSCKPDVWTMNIILSLFGNRGEVELMERWYEKFRGYG 398
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
++P+TR +IG Y + M DK E M+ T+ +I AG+
Sbjct: 399 VEPETRTLNILIGAYGKRRMYDKMSAVMEHMRKLAFPWTTATYNNVIEAFAEAGD 453
>gi|357462173|ref|XP_003601368.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490416|gb|AES71619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 144
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Query: 53 MWRSRV-LSSEAIQAVHAMK-LAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDL 110
+WR + L E + +K L +L+ +S + RLLK+DL+ L E Q+ + L
Sbjct: 33 IWRRKKELGKEGLIITKELKRLQTDPVRLDRFVRSNVSRLLKSDLVSVLFEFHGQDNVFL 92
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
++K+++ VRKE+WY+PD+ Y DM++ML +NK++ + ++ +LK E
Sbjct: 93 SMKLYDIVRKEIWYRPDMFFYRDMLMMLARNKRVDETKRVWDDLKGE 139
>gi|168028441|ref|XP_001766736.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681945|gb|EDQ68367.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 560
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 69/128 (53%), Gaps = 2/128 (1%)
Query: 85 SRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQI 144
SR+ R L A ++ + L+ Q E LALK F++ +++ YK D+ Y+ MI ++G+ +
Sbjct: 26 SRVNRTLSAFHINEV--LKHQKESGLALKFFDWAKEQEGYKHDVCTYTTMIGIMGRARNF 83
Query: 145 AMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTIL 204
L E+++EG +P Y +I Y + + +AM + M+ GC+P ++T+ L
Sbjct: 84 EACSRLLQEMRREGCEPCVVTYNRLIHAYGRANFLGEAMRIFYQMQEEGCSPDRVTYCTL 143
Query: 205 IRNLENAG 212
+ AG
Sbjct: 144 VDLHSKAG 151
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 8/159 (5%)
Query: 59 LSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFV 118
L +++ V AMKL + GF R+ + +++ L ++ E +L +FN +
Sbjct: 216 LQAKSGNYVMAMKLYNDMQ--DAGFHPD--RVTYSIMMEVLGQIGHLQEAEL---MFNEM 268
Query: 119 RKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM 178
+ W PD +Y M+ M GK + A E + ++ GL P+ ++ ++G YL++
Sbjct: 269 EQAGWV-PDAPIYGVMVDMWGKARNAERALEWYQKMLDSGLTPNVQISNSLLGSYLRMQQ 327
Query: 179 IDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
D A ETMKA G P T TIL+ + + + V
Sbjct: 328 FDLAFGVIETMKAWGLVPTLQTHTILLSSCTASAQHHQV 366
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
N +D+ K+ ++ ++PD YS +I LGK +++ A +LF E+ + G P
Sbjct: 155 NAMDMYQKM-----QQAGFQPDTFTYSVIIHCLGKAGKVSEALKLFEEMVERGFAPSLVT 209
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
Y +I + + G AM+ Y M+ +G P ++T++I++ L G
Sbjct: 210 YNIIIDLQAKSGNYVMAMKLYNDMQDAGFHPDRVTYSIMMEVLGQIGH 257
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + ++ ALK+F + E + P L Y+ +I + K+ MA +L+ +++ G P
Sbjct: 182 LGKAGKVSEALKLFEEM-VERGFAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQDAGFHP 240
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI------RNLENAGE 213
D Y+ M+ V Q+G + +A + M+ +G P + +++ RN E A E
Sbjct: 241 DRVTYSIMMEVLGQIGHLQEAELMFNEMEQAGWVPDAPIYGVMVDMWGKARNAERALE 298
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R N L A+++F + +E PD Y ++ + K A +++ ++++ G PDT
Sbjct: 114 RANFLGEAMRIF-YQMQEEGCSPDRVTYCTLVDLHSKAGFHDNAMDMYQKMQQAGFQPDT 172
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y+ +I + G + +A++ +E M G P +T+ I+I
Sbjct: 173 FTYSVIIHCLGKAGKVSEALKLFEEMVERGFAPSLVTYNIII 214
>gi|293330977|ref|NP_001169349.1| uncharacterized protein LOC100383216 [Zea mays]
gi|30961817|gb|AAP37977.1| PPR2 [Zea mays]
gi|224028857|gb|ACN33504.1| unknown [Zea mays]
gi|414883415|tpg|DAA59429.1| TPA: pentatricopeptide repeat 2 [Zea mays]
Length = 571
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL+VF ++++ +Y P Y +I++LG++ Q A +LF E+ ++G P +YT +I
Sbjct: 200 ALQVFEMLKEQPFYHPKEGTYMKLIVLLGRSGQPTRAHQLFDEMLQQGCQPTPELYTALI 259
Query: 171 GVYLQVGMIDKAMETYETMKASG-CTPHKLTFTILIRNLENAGEEELVAAVRRD 223
G Y + G++D+A++ MK+S C P T++ +I+ +A +L A+ +D
Sbjct: 260 GAYCRSGLLDEALQLLNDMKSSPLCQPDVYTYSTIIKACIDAARFDLTDAMYKD 313
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 51/115 (44%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L+ + LD +V + + V KPD+ + ++ + G ++ + E + + + G
Sbjct: 330 LSGYGKAGRLDDMERVLSDMLDSVSCKPDVWTMNIILSLFGNRGEVELMERWYEKFRGYG 389
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
++P+TR +IG Y + M DK E M+ T+ +I AG+
Sbjct: 390 VEPETRTLNILIGAYGKRRMYDKMSAVMEHMRKLAFPWTTATYNNVIEAFAEAGD 444
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R LD AL++ N ++ +PD+ YS +I + + + ++ ++ + + P+T
Sbjct: 264 RSGLLDEALQLLNDMKSSPLCQPDVYTYSTIIKACIDAARFDLTDAMYKDMAERSISPNT 323
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKAS-GCTPHKLTFTILIRNLENAGEEELV 217
++ Y + G +D M S C P T I++ N GE EL+
Sbjct: 324 VTQNIVLSGYGKAGRLDDMERVLSDMLDSVSCKPDVWTMNIILSLFGNRGEVELM 378
>gi|168012907|ref|XP_001759143.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689842|gb|EDQ76212.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 505
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 18/162 (11%)
Query: 57 RVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFN 116
R+L++ + V ++ S KL D L L L Q++ L L+VF
Sbjct: 56 RILNASQVSVVQILESLSPSMKL-------------TDWLSLLEGLANQSKWALTLEVFR 102
Query: 117 FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176
+++++ WY D Y+ +I++ GK + + MA LF E+K+ G PD+ +Y +I YL
Sbjct: 103 WMQRQKWYNHDDGFYAKLIVISGKARDLRMAVWLFNEVKRSGSRPDSSLYNALITAYLHS 162
Query: 177 ----GMIDKAMETYETMK-ASGCTPHKLTFTILIRNLENAGE 213
+ AM+ +E MK C P+ +T+ IL+R G+
Sbjct: 163 RDKGRGFEAAMKLFEKMKQKPKCQPNLVTYNILLRASAQLGD 204
>gi|223946379|gb|ACN27273.1| unknown [Zea mays]
gi|413924536|gb|AFW64468.1| pentatricopeptide repeat 5 [Zea mays]
Length = 386
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 67/122 (54%), Gaps = 5/122 (4%)
Query: 118 VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYL--- 174
++K+ WY D +YS +I ++G+ QI MA LF +++ G PDT VY +IG +L
Sbjct: 1 MQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHSR 60
Query: 175 -QVGMIDKAMETYETMKA-SGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
+ + KA+ +E MK C P +T+ IL+R AG+ + V + +D + V P+
Sbjct: 61 DKTKALAKALGYFEKMKCIERCQPTIVTYNILLRAFAQAGDTKQVDMLFKDLDESVVSPD 120
Query: 233 RF 234
+
Sbjct: 121 VY 122
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 139 GKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK 198
G KQ+ M LF +L + + PD Y ++ Y + GMI + MK++ C P
Sbjct: 100 GDTKQVDM---LFKDLDESVVSPDVYTYNGVLDAYGKNGMIKEMESVLVRMKSTQCRPDV 156
Query: 199 LTFTILI 205
+TF ILI
Sbjct: 157 ITFNILI 163
>gi|242057231|ref|XP_002457761.1| hypothetical protein SORBIDRAFT_03g013016 [Sorghum bicolor]
gi|241929736|gb|EES02881.1| hypothetical protein SORBIDRAFT_03g013016 [Sorghum bicolor]
Length = 267
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL++F +RK+ WY+P Y+ +++MLGK +Q A LF + E L P VYT ++
Sbjct: 57 ALEIFELLRKQHWYEPRSQTYARLLMMLGKCRQPGPAAALFKAMLSERLRPTADVYTALV 116
Query: 171 GVYLQVGMIDKAMETYETMK-ASGCTPHKLTFT 202
G Y G +D+A+ E MK A+ C P TF+
Sbjct: 117 GAYGYSGFLDEALAAVEQMKGAADCKPDGYTFS 149
>gi|449525698|ref|XP_004169853.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic-like [Cucumis sativus]
Length = 494
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 70/128 (54%), Gaps = 5/128 (3%)
Query: 101 ELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD 160
EL ++++ L+VF +++K+ WY D +YS +I ++GK QI MA LF E++ G
Sbjct: 100 ELGKRDKWLECLEVFRWMQKQRWYIADNGVYSKLISIMGKKGQIRMAMWLFSEMRNSGCR 159
Query: 161 PDTRVYTEMIGVYL----QVGMIDKAMETYETMKA-SGCTPHKLTFTILIRNLENAGEEE 215
PDT VY +I +L + + K + +E MK C P+ +T+ IL R A + +
Sbjct: 160 PDTSVYNALITAHLHSKDKAKALVKVLSYFEKMKGMERCKPNIVTYNILTRAFAQAAKVD 219
Query: 216 LVAAVRRD 223
V + +D
Sbjct: 220 QVNTLFKD 227
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P L ++ MI GK + AEE+F ++K G DP +I +Y + KA E
Sbjct: 304 RPTLPTFNSMITNYGKARLREKAEEVFRKMKDMGYDPSYVTCESLIMMYGHCDCVSKARE 363
Query: 185 TYETMKASG 193
++ M SG
Sbjct: 364 IFDGMVNSG 372
>gi|449451631|ref|XP_004143565.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic-like [Cucumis sativus]
Length = 528
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 5/133 (3%)
Query: 101 ELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD 160
EL ++++ L+VF +++K+ WY D +YS +I ++GK QI MA LF E++ G
Sbjct: 100 ELGKRDKWLECLEVFRWMQKQRWYIADNGVYSKLISIMGKKGQIRMAMWLFSEMRNSGCR 159
Query: 161 PDTRVYTEMIGVYL----QVGMIDKAMETYETMKA-SGCTPHKLTFTILIRNLENAGEEE 215
PDT VY +I +L + + K + +E MK C P+ +T+ IL R A + +
Sbjct: 160 PDTSVYNALITAHLHSKDKAKALVKVLSYFEKMKGMERCKPNIVTYNILTRAFAQAAKVD 219
Query: 216 LVAAVRRDCIQYV 228
V + +D + V
Sbjct: 220 QVNTLFKDLDESV 232
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P L ++ MI GK + AEE+F ++K G DP +I +Y + KA E
Sbjct: 304 RPTLPTFNSMITNYGKARLREKAEEVFRKMKDMGYDPSYVTCESLIMMYGHCDCVSKARE 363
Query: 185 TYETMKASG 193
++ M SG
Sbjct: 364 IFDGMVNSG 372
>gi|224081220|ref|XP_002306340.1| predicted protein [Populus trichocarpa]
gi|222855789|gb|EEE93336.1| predicted protein [Populus trichocarpa]
Length = 416
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 74/139 (53%), Gaps = 5/139 (3%)
Query: 101 ELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD 160
EL + ++ L+VF +++K+ WY D YS +I ++GK Q MA LF E++ G
Sbjct: 62 ELGKTDKWLQCLEVFRWMQKQRWYVADNGCYSKLISVMGKKGQTRMAMWLFSEMRNSGCR 121
Query: 161 PDTRVYTEMIGVYL----QVGMIDKAMETYETMKA-SGCTPHKLTFTILIRNLENAGEEE 215
PDT VY +I +L + + KA+ +E MK+ C P+ +T+ I++R A
Sbjct: 122 PDTSVYNALITAHLHSKDKAKSLTKALAYFEKMKSIERCQPNVVTYNIILRAFAQARNVN 181
Query: 216 LVAAVRRDCIQYVEFPERF 234
V A+ +D + + P+ +
Sbjct: 182 QVNALFKDLEESIVSPDIY 200
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ ++ + + + LF +L++ + PD Y ++ Y + GMI +
Sbjct: 161 QPNVVTYNIILRAFAQARNVNQVNALFKDLEESIVSPDIYTYNGVLDAYGKNGMIREMES 220
Query: 185 TYETMKASGCTPHKLTFTILI 205
MK C P +TF +LI
Sbjct: 221 VLSRMKIDQCKPDIITFNLLI 241
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 43/94 (45%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y P + +I+M G ++ A ++F ++ + G + ++ VY G+ +A
Sbjct: 300 YTPSFITFESLIMMYGICDCVSKARDIFDDMVESGKEVKVSTLNAVLNVYCMNGLHMEAH 359
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
E ++ G P+ T+ +L R A +ELV
Sbjct: 360 ILLENARSIGVPPNSSTYKLLYRAYTKAKMKELV 393
>gi|242047208|ref|XP_002461350.1| hypothetical protein SORBIDRAFT_02g001400 [Sorghum bicolor]
gi|241924727|gb|EER97871.1| hypothetical protein SORBIDRAFT_02g001400 [Sorghum bicolor]
Length = 560
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL+VF ++++ +Y P + +I++LG++ Q A A +LF E+ ++G P +YT +I
Sbjct: 189 ALQVFEMLKEQPFYHPKEGTFMKLIVLLGRSGQPARAHQLFDEMLQQGCQPTPGLYTALI 248
Query: 171 GVYLQVGMIDKAMETYETMKASG-CTPHKLTFTILIRNLENAGEEELVAAVRRD 223
G Y + G++D A++ MK S C P T++ +I+ +A +L+ + +D
Sbjct: 249 GAYCRSGLLDDALQLLNDMKGSPLCQPDVYTYSTIIKACVDATRFDLIDVMYKD 302
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 51/115 (44%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L+ + LD KV + + KPD+ + ++ + G Q+ + E+ + + + G
Sbjct: 319 LSGYGKAGRLDDMEKVLSDMLDSTACKPDVWTMNIILSLFGNKGQVELMEKWYEKFRSYG 378
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
++P+TR +IG Y + M DK E M+ T+ +I AG+
Sbjct: 379 IEPETRTLNILIGAYGKKRMYDKMSAVMEYMRKLAFPWTTATYNNVIEAFAEAGD 433
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R LD AL++ N ++ +PD+ YS +I + + + ++ ++ + + P+T
Sbjct: 253 RSGLLDDALQLLNDMKGSPLCQPDVYTYSTIIKACVDATRFDLIDVMYKDMAERSIAPNT 312
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETM-KASGCTPHKLTFTILIRNLENAGEEELV 217
++ Y + G +D + M ++ C P T I++ N G+ EL+
Sbjct: 313 VTQNIVLSGYGKAGRLDDMEKVLSDMLDSTACKPDVWTMNIILSLFGNKGQVELM 367
>gi|302765999|ref|XP_002966420.1| hypothetical protein SELMODRAFT_407939 [Selaginella moellendorffii]
gi|300165840|gb|EFJ32447.1| hypothetical protein SELMODRAFT_407939 [Selaginella moellendorffii]
Length = 261
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 8/177 (4%)
Query: 45 LRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTEL-- 102
+RDA R+ S+ IQ + + K KS +KL+ S RLL DL L
Sbjct: 58 IRDAAPPKTLRASRESATVIQLLRSAK--KSPAKLDAYLGSHASRLLCKDLQYVLNVFLK 115
Query: 103 RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG----KNKQIAMAEELFCELKKEG 158
++N++DLA K+F +RKE WYKP S Y ++ + K + EL + EG
Sbjct: 116 NQENDIDLAFKIFELIRKESWYKPSESTYMRLVSFYCRADERKKPMRPILELLNTAQGEG 175
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ + TE + + D ++ Y M++SGC H+ +T L ++ AG +E
Sbjct: 176 VALSEAMLTEPMRCCILQADFDTCLQFYRLMRSSGCQVHRGLYTYLAKSFSRAGLKE 232
>gi|302797108|ref|XP_002980315.1| hypothetical protein SELMODRAFT_444519 [Selaginella moellendorffii]
gi|300151931|gb|EFJ18575.1| hypothetical protein SELMODRAFT_444519 [Selaginella moellendorffii]
Length = 2030
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
+++ L+LK+F + + +K DL YS MI++LG + MAE LF E+++ GL DT
Sbjct: 1497 KHDASLSLKLFTWAKTIPGFKHDLVNYSTMIMILGDDGNYLMAEALFVEIQELGLRLDTF 1556
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
MI Y +V I +A++ Y M GC P TF +LI
Sbjct: 1557 AVNNMIRCYTRVNRIQEALDLYRKMPYFGCHPDNCTFGLLI 1597
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%)
Query: 129 SLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYET 188
+ Y+ +I M K + A EL+ + + GL+P+ VY +I Y G A
Sbjct: 1661 ATYAILIHMYAKARDSKAAAELYADYLRSGLEPNLIVYNNVILSYGSSGFPGHAQNILGD 1720
Query: 189 MKASGCTPHKLTFTILIRNLENAG 212
++ +G P + T+ LI + AG
Sbjct: 1721 IRKAGLAPDRFTYCTLISSWARAG 1744
>gi|302759176|ref|XP_002963011.1| hypothetical protein SELMODRAFT_438275 [Selaginella moellendorffii]
gi|300169872|gb|EFJ36474.1| hypothetical protein SELMODRAFT_438275 [Selaginella moellendorffii]
Length = 2074
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
+++ L+LK+F + + +K DL YS MI++LG + MAE LF E+++ GL DT
Sbjct: 1541 KHDASLSLKLFTWAKTIPGFKHDLVNYSTMIMILGDDGNYLMAEALFVEIQELGLRLDTF 1600
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
MI Y +V I +A++ Y M GC P TF +LI
Sbjct: 1601 AVNNMIRCYTRVNRIQEALDLYRKMPYFGCHPDNCTFGLLI 1641
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%)
Query: 129 SLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYET 188
+ Y+ +I M K + A EL+ + + GL+P+ VY +I Y G A
Sbjct: 1705 ATYAILIHMYAKARDSKAAAELYADYLRSGLEPNLIVYNNVILSYGSSGFPGHAQNILGD 1764
Query: 189 MKASGCTPHKLTFTILIRNLENAG 212
++ +G P + T+ LI + AG
Sbjct: 1765 IRKAGLAPDRFTYCTLISSWARAG 1788
>gi|302797110|ref|XP_002980316.1| hypothetical protein SELMODRAFT_420032 [Selaginella moellendorffii]
gi|300151932|gb|EFJ18576.1| hypothetical protein SELMODRAFT_420032 [Selaginella moellendorffii]
Length = 1527
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
+++ L+LK+F + + +K DL YS MI++LG + MAE LF E+++ GL DT
Sbjct: 990 KHDASLSLKLFTWAKTIPGFKHDLVNYSTMIMILGDDGNYLMAEALFVEIQELGLRLDTF 1049
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
MI Y +V I +A++ Y M GC P TF +LI
Sbjct: 1050 AVNNMIRCYTRVNRIQEALDLYSKMPYFGCHPDNCTFGLLI 1090
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%)
Query: 129 SLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYET 188
+ Y+ +I M K + A EL+ + + GL+P+ VY +I Y G A
Sbjct: 1154 ATYAILIHMYAKARDSKAAAELYADYLRSGLEPNLIVYNNVILSYGSSGFPGHAQNILGD 1213
Query: 189 MKASGCTPHKLTFTILIRNLENAG 212
++ +G P + T+ LI + AG
Sbjct: 1214 IRKAGLAPDRFTYCTLISSWARAG 1237
>gi|302759174|ref|XP_002963010.1| hypothetical protein SELMODRAFT_78269 [Selaginella moellendorffii]
gi|300169871|gb|EFJ36473.1| hypothetical protein SELMODRAFT_78269 [Selaginella moellendorffii]
Length = 265
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
+++ L+LK+F + + +K DL YS MI++LG + MAE LF E+++ GL DT
Sbjct: 14 KHDASLSLKLFTWAKTIPGFKHDLVNYSTMIMILGDDGNYLMAEALFVEIQELGLRLDTF 73
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
MI Y +V I +A++ Y M GC P TF +LI
Sbjct: 74 AVNNMIRCYTRVNRIQEALDLYRKMPYFGCHPDNCTFGLLI 114
>gi|168045490|ref|XP_001775210.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673423|gb|EDQ59946.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 404
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 3/122 (2%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
D+ LTEL+RQ++ L+VF++ +K+ WY P+ LY+ +I LG+ ++ A LF E
Sbjct: 12 DITCVLTELQRQHDWRCTLEVFSWSKKQSWYCPNSRLYTRLIGFLGREGRVHNATLLFQE 71
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS---GCTPHKLTFTILIRNLEN 210
+ E D YT ++ Y + M ++A+ + MK S C P+ +T LI L
Sbjct: 72 MLLEKCQADQYTYTALVNAYGKAKMFEEALAVFSHMKESNEPNCQPNTVTCNALIDALVK 131
Query: 211 AG 212
G
Sbjct: 132 GG 133
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 16/173 (9%)
Query: 37 QALTVTC-GLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADL 95
Q TVTC L DA K L +AIQ M+ ++ LE G + + + L
Sbjct: 116 QPNTVTCNALIDALVKGG-----LYDQAIQVFFDMR--DGTNGLEHGCEPNV--ITYNVL 166
Query: 96 LDTLTELRRQNELDLALKVFNFVRK---EVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
+D L ++ LD+ +KV ++R + +P+ + Y+ +I GK AEEL
Sbjct: 167 IDALC---KEGLLDIGMKVLQYMRDGNTDQSVQPNSATYNTLINACGKGGLYEKAEELVD 223
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ + G+ PD YT +I Y + G+ + A T++ MK + + + +T +I
Sbjct: 224 LMVEHGVQPDHITYTALIDAYGKAGLWENAENTFKGMKGTNVSVDVMAYTAMI 276
>gi|302797623|ref|XP_002980572.1| hypothetical protein SELMODRAFT_444589 [Selaginella moellendorffii]
gi|300151578|gb|EFJ18223.1| hypothetical protein SELMODRAFT_444589 [Selaginella moellendorffii]
Length = 1048
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 91/208 (43%), Gaps = 41/208 (19%)
Query: 13 LKFHFSQMGFHQRPQISLPSGKKIQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKL 72
+K F ++ R ++ L V C R + P+ R R L EAI V ++K
Sbjct: 173 VKKEFMELNAAHRWVAGFNVAERKSGLRVLCSTRSLPRLPIMRGRKLGREAILTVQSLKR 232
Query: 73 AKS-SSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLY 131
AK ++E+ +S++ RLLK D+L+ L EL RQN+ LA +
Sbjct: 233 AKGVREEMEQVLKSQVSRLLKTDMLEVLRELHRQNDCVLAYE------------------ 274
Query: 132 SDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA 191
EL+ E L PD VYTE++ YL+ + A++T++ MK
Sbjct: 275 ---------------------ELQGEML-PDGLVYTELMTAYLRCERPNDAIDTFQEMKQ 312
Query: 192 SGCTPHKLTFTILIRNLENAGEEELVAA 219
G T TFT L + LE G E +A
Sbjct: 313 LGLTVELKTFTTLAKWLEKKGLGEEASA 340
>gi|302790153|ref|XP_002976844.1| hypothetical protein SELMODRAFT_443353 [Selaginella moellendorffii]
gi|300155322|gb|EFJ21954.1| hypothetical protein SELMODRAFT_443353 [Selaginella moellendorffii]
Length = 566
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 86/187 (45%), Gaps = 42/187 (22%)
Query: 38 ALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKS-SSKLEEGFQSRICRLLKADLL 96
L V C R + P+ R R L EAI V ++K AK ++E+ +S++ RLLK D+L
Sbjct: 198 GLRVLCSTRSLPRLPIMRGRKLGREAILTVQSLKRAKGVREEMEQVLKSQVSRLLKTDML 257
Query: 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKK 156
+ L EL RQN+ LA + EL+
Sbjct: 258 EVLRELHRQNDCVLAYE---------------------------------------ELQG 278
Query: 157 EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG-EEE 215
E L PD VYTE++ YL+ + A++T++ MK G T TFT L + LE G EE
Sbjct: 279 EML-PDGLVYTELMTAYLRCERPNDAIDTFQEMKQLGLTVELKTFTTLAKWLEKKGLGEE 337
Query: 216 LVAAVRR 222
A ++R
Sbjct: 338 ASAGMQR 344
>gi|356523014|ref|XP_003530137.1| PREDICTED: uncharacterized protein LOC100799612 [Glycine max]
Length = 240
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 96/204 (47%), Gaps = 18/204 (8%)
Query: 26 PQISLPSGKKIQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSS--KLEEGF 83
P I+ P ++ V CG + + P+ + R+LS EAIQA+ +K ++ L
Sbjct: 17 PTIATPRWGYVR---VRCGGPRSQRSPLMKGRILSIEAIQAIQTLKRLHRTNPPNLSSLV 73
Query: 84 QSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMI----LMLG 139
+ + RL+K+DLL TL EL RQ +AL+ F+ +R E Y DLSLY+++I
Sbjct: 74 SNTLTRLIKSDLLATLRELLRQQHCTIALRAFSTLRSE--YGADLSLYAEIISALAAAAA 131
Query: 140 KNKQIAMAEELFCELKKEGLD---PDTRVYTEMIGVYLQVGMIDKAMETYETMKASG--- 193
+ + L +L+ E + D + +I + + + Y MK SG
Sbjct: 132 AAEMTDHVDRLILDLEAENEEIKCDDHKGLASLIKAVVAARSRESTVRIYGLMKKSGYGS 191
Query: 194 -CTPHKLTFTILIRNLENAGEEEL 216
P + +L+ L++ GEE L
Sbjct: 192 VTEPDEYVVKVLVNGLKSFGEEAL 215
>gi|357519615|ref|XP_003630096.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524118|gb|AET04572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 635
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 71/128 (55%), Gaps = 5/128 (3%)
Query: 101 ELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD 160
EL + ++ L+VF +++++ WY D +YS +I ++GK QI +A LF E++ G
Sbjct: 90 ELGKHDKWLQCLEVFRWMQRQRWYIADNGVYSKLISVMGKKGQIRLAMWLFSEMRNTGCR 149
Query: 161 PDTRVYTEMIGVYL----QVGMIDKAMETYETMKAS-GCTPHKLTFTILIRNLENAGEEE 215
PDT VY +I +L + + KA+ +E MK + C P+ +T+ IL+R A +
Sbjct: 150 PDTSVYNSLISAHLHSRDKSKALVKALGYFEKMKTTERCKPNIVTYNILLRAFAQARDVN 209
Query: 216 LVAAVRRD 223
V + +D
Sbjct: 210 QVNYLFKD 217
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
K DL Y+ +I GK +Q E++F L + P + MI Y + + DKA
Sbjct: 259 KLDLITYNLLIDSYGKKQQFDKMEQVFKSLSRSKEKPTLPTFNSMILNYGKARLKDKAEN 318
Query: 185 TYETMKASGCTPHKLTFTILI 205
++ M G TP +T LI
Sbjct: 319 VFQNMTDMGYTPSFVTHESLI 339
>gi|356565453|ref|XP_003550954.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Glycine max]
Length = 488
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL+VF+ +R++ +Y+P Y +I++LGK+ Q A +LF + +EGL+P +YT ++
Sbjct: 109 ALQVFDMLREQTFYQPKEGTYMKLIVLLGKSGQPHRAHQLFTTMIEEGLEPTPELYTALL 168
Query: 171 GVYLQVGMIDKAMETYETMKA-SGCTPHKLTFTILIRNLENAGEEELV 217
Y + MID+A MK C P T++ LI+ +A + +LV
Sbjct: 169 AAYCRSNMIDEAFSVLNEMKKLPRCQPDVFTYSTLIKVCVDAFKFDLV 216
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R N +D A V N ++K +PD+ YS +I + + + E L+ E+ + + P+T
Sbjct: 173 RSNMIDEAFSVLNEMKKLPRCQPDVFTYSTLIKVCVDAFKFDLVELLYEEMAERSIMPNT 232
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETM-KASGCTPHKLTFTILIRNLENAGEEELV 217
++G Y + GM D+ + +M ++ C P T +I N G+ +++
Sbjct: 233 VTQNIVLGGYGKAGMFDQMEKVLSSMLLSTTCKPDVWTMNTIISVFGNMGQIDMM 287
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ + +I + G QI M E+ + + + G++P+TR + +IG Y + M DK
Sbjct: 265 KPDVWTMNTIISVFGNMGQIDMMEKWYEKFRYFGIEPETRTFNILIGAYGKKRMYDKMSS 324
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
E M+ T+ +I +AG+
Sbjct: 325 VMEYMRKLQFPWTTSTYNNVIEAFADAGD 353
>gi|302806553|ref|XP_002985026.1| hypothetical protein SELMODRAFT_121322 [Selaginella moellendorffii]
gi|300147236|gb|EFJ13901.1| hypothetical protein SELMODRAFT_121322 [Selaginella moellendorffii]
Length = 288
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ ++ LGK K+ A +LF E+ GL DT YT +IG LQ G+I +A
Sbjct: 1 PDVVTYTSLMDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIGGLLQAGIIPQASSV 60
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
Y+TM + GC P +T + +I L AG + AAVR
Sbjct: 61 YKTMTSQGCVPDVVTLSTMIDGLSKAG--RIGAAVR 94
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ +I LGK K+ A +LF E+ GL D+ YT I LQ G I +A Y+TM
Sbjct: 159 YTSLIDGLGKEKRSFEAYKLFKEMASRGLALDSVCYTAFIRGLLQAGKIPQASSVYKTMM 218
Query: 191 ASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
+ GC P +T + +I L AG + AAVR
Sbjct: 219 SQGCVPDVVTLSTMIDGLSKAG--RIGAAVR 247
>gi|168000162|ref|XP_001752785.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695948|gb|EDQ82289.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 482
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 11/179 (6%)
Query: 30 LPSGKKIQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICR 89
+P KK Q L T R A K+ W + E V + SS+ E+G +
Sbjct: 20 VPETKKQQGLGETSS-RVARKQLKWEKMMREIE----VSGSAVGVLSSRKEDG------K 68
Query: 90 LLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEE 149
+ K D+L TL LR+ N+ + L+V +++++ W+ + ++ MI GK Q +AE
Sbjct: 69 VSKGDVLGTLIRLRQLNKWTMVLEVLLWLKQQDWWNFGIHDFNLMIAAYGKLGQPGIAEL 128
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
F E+++ GL+P+ +T ++ + + G +A Y+ M +G P ++T+ + I L
Sbjct: 129 SFTEMREVGLEPNVACFTSLLEAHARTGNFVRAESIYQEMLKTGPAPTEVTYQVYINAL 187
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ Y+ ++ + AE L +K+ GL+P+ Y ++ Y V I+ ++
Sbjct: 347 RPDIRSYTTLLAAYANTGNMKKAERLLKRMKQAGLEPNVVTYGTLMQGYTSVHDINAMLQ 406
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
T+E ++ +G P+ FT+L+R G++E
Sbjct: 407 TFEDLQKAGIKPNSTIFTLLVRTF---GQQE 434
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P Y+ ++ K K++ AE LF + ++ PD R YT ++ Y G + KA
Sbjct: 312 RPSRIAYNTLLDAYAKCKEVEGAESLFKSMGQDRCRPDIRSYTTLLAAYANTGNMKKAER 371
Query: 185 TYETMKASGCTPHKLTFTILIRN 207
+ MK +G P+ +T+ L++
Sbjct: 372 LLKRMKQAGLEPNVVTYGTLMQG 394
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ +I K +++ A +F E+ GL P Y ++ Y + ++ A
Sbjct: 277 KPDVITYTGLINAYSKARRVEEAHVVFREMVASGLRPSRIAYNTLLDAYAKCKEVEGAES 336
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+++M C P ++T L+ N G
Sbjct: 337 LFKSMGQDRCRPDIRSYTTLLAAYANTG 364
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 35/142 (24%)
Query: 96 LDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELK 155
++ L + R N+ A ++F + + KPD LY+ M+ GK + + + LF ++K
Sbjct: 184 INALCKAERFND---AERIFKCLDESAEAKPDARLYNLMLHTYGKAGKFSEQQALFRQMK 240
Query: 156 KEG--------------------------------LDPDTRVYTEMIGVYLQVGMIDKAM 183
G + PD YT +I Y + +++A
Sbjct: 241 GAGVPMTVVTFNSLMAFQKTVADAEACLRHMQAAKIKPDVITYTGLINAYSKARRVEEAH 300
Query: 184 ETYETMKASGCTPHKLTFTILI 205
+ M ASG P ++ + L+
Sbjct: 301 VVFREMVASGLRPSRIAYNTLL 322
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 59/154 (38%), Gaps = 20/154 (12%)
Query: 108 LDLALKVFNFVRKEVWYK--------PDLSLYSDMILMLGKNKQIAMAEELF-CELKKEG 158
L+ + NFVR E Y+ P Y I L K ++ AE +F C +
Sbjct: 149 LEAHARTGNFVRAESIYQEMLKTGPAPTEVTYQVYINALCKAERFNDAERIFKCLDESAE 208
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL-- 216
PD R+Y M+ Y + G + + MK +G +TF L+ + + E
Sbjct: 209 AKPDARLYNLMLHTYGKAGKFSEQQALFRQMKGAGVPMTVVTFNSLMAFQKTVADAEACL 268
Query: 217 ----VAAVRRDCIQYVEFPERFLEEVYQKHRKTQ 246
A ++ D I Y L Y K R+ +
Sbjct: 269 RHMQAAKIKPDVITYTG-----LINAYSKARRVE 297
>gi|302792757|ref|XP_002978144.1| hypothetical protein SELMODRAFT_417820 [Selaginella moellendorffii]
gi|300154165|gb|EFJ20801.1| hypothetical protein SELMODRAFT_417820 [Selaginella moellendorffii]
Length = 261
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 8/177 (4%)
Query: 45 LRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTEL-- 102
+RDA R+ S+ IQ + + K KS +KL+ S RLL DL L
Sbjct: 58 IRDAAPPKTLRASRESATVIQLLRSAK--KSPAKLDAYLGSHASRLLCKDLQYVLNVFLK 115
Query: 103 RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG----KNKQIAMAEELFCELKKEG 158
++N++DLA K+F +RKE WYKP S Y ++ + K + EL + EG
Sbjct: 116 NQENDIDLAFKIFELIRKESWYKPSESTYMRLVSFYCRADERKKPMRPILELLNTAQGEG 175
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ + TE + + D ++ Y M++SGC H+ + L ++ AG +E
Sbjct: 176 VALSEAMLTEPMRCCILQADFDTCLQFYRLMRSSGCQVHRGLYAYLAKSFSRAGLKE 232
>gi|115445137|ref|NP_001046348.1| Os02g0226900 [Oryza sativa Japonica Group]
gi|49388538|dbj|BAD25660.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|49388672|dbj|BAD25856.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535879|dbj|BAF08262.1| Os02g0226900 [Oryza sativa Japonica Group]
Length = 637
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 51/87 (58%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ +Y+ + LGK KQ++ LF ++K G+ PD Y MI Y +VG++DKA E +
Sbjct: 427 DVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELF 486
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGE 213
E M+AS C P +T+ LI L G+
Sbjct: 487 EVMEASSCKPDVVTYNSLINCLGKHGD 513
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 54/91 (59%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ +I LGK+ + A LF E++++G DPD Y+ +I + + ++ A
Sbjct: 495 KPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACS 554
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ M + GCTP+ +T+ IL+ LE G+ E
Sbjct: 555 LFDEMISEGCTPNIVTYNILLDCLERRGKTE 585
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 1/143 (0%)
Query: 64 IQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVW 123
I + + L +S+L E ++ C+ + L + +LD A +F + +E
Sbjct: 470 ISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEM-QEKG 528
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y PD+ YS +I GK+ ++ MA LF E+ EG P+ Y ++ + G ++A
Sbjct: 529 YDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAH 588
Query: 184 ETYETMKASGCTPHKLTFTILIR 206
+ YETMK G P +T++IL R
Sbjct: 589 KLYETMKQQGLIPDSITYSILER 611
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 42/73 (57%)
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
++++++ +++ E++++G D Y ++ + GM+D+A + +E MK C P
Sbjct: 198 RSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPDAY 257
Query: 200 TFTILIRNLENAG 212
T+TILIR AG
Sbjct: 258 TYTILIRMSGKAG 270
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R E+ +V+ +R++ YK D+ Y+ ++ L K + A ++F ++K++ PD
Sbjct: 198 RSREVSKGFQVYEEMRRK-GYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPDA 256
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
YT +I + + G K + ++ M + GC + + F +I L G+ ++V V
Sbjct: 257 YTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEAL---GKNKMVDKV 310
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L + +D A +VF ++++ PD Y+ +I M GK + + F E+ +G
Sbjct: 228 LDALAKAGMVDQAFQVFEDMKQKHCV-PDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKG 286
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
+ + +I + M+DK + M + C P++ T++I + L G+ +
Sbjct: 287 CVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLN 346
Query: 219 AVRRDCIQYVE 229
V C +++
Sbjct: 347 EVLDICSRFMN 357
>gi|218190347|gb|EEC72774.1| hypothetical protein OsI_06434 [Oryza sativa Indica Group]
Length = 579
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 51/87 (58%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ +Y+ + LGK KQ++ LF ++K G+ PD Y MI Y +VG++DKA E +
Sbjct: 369 DVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELF 428
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGE 213
E M+AS C P +T+ LI L G+
Sbjct: 429 EVMEASSCKPDVVTYNSLINCLGKHGD 455
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 54/91 (59%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ +I LGK+ + A LF E++++G DPD Y+ +I + + ++ A
Sbjct: 437 KPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACS 496
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ M + GCTP+ +T+ IL+ LE G+ E
Sbjct: 497 LFDEMISEGCTPNIVTYNILLDCLERRGKTE 527
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 1/143 (0%)
Query: 64 IQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVW 123
I + + L +S+L E ++ C+ + L + +LD A +F + +E
Sbjct: 412 ISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEM-QEKG 470
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y PD+ YS +I GK+ ++ MA LF E+ EG P+ Y ++ + G ++A
Sbjct: 471 YDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAH 530
Query: 184 ETYETMKASGCTPHKLTFTILIR 206
+ YETMK G P +T++IL R
Sbjct: 531 KLYETMKQQGLIPDSITYSILER 553
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 42/73 (57%)
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
++++++ +++ E++++G D Y ++ + GM+D+A + +E MK C P
Sbjct: 140 RSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPDAY 199
Query: 200 TFTILIRNLENAG 212
T+TILIR AG
Sbjct: 200 TYTILIRMSGKAG 212
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R E+ +V+ +R++ YK D+ Y+ ++ L K + A ++F ++K++ PD
Sbjct: 140 RSREVSKGFQVYEEMRRK-GYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPDA 198
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
YT +I + + G K + ++ M + GC + + F +I L G+ ++V V
Sbjct: 199 YTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEAL---GKNKMVDKV 252
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L + +D A +VF ++++ PD Y+ +I M GK + + F E+ +G
Sbjct: 170 LDALAKAGMVDQAFQVFEDMKQKHCV-PDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKG 228
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
+ + +I + M+DK + M + C P++ T++I + L G+ +
Sbjct: 229 CVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLN 288
Query: 219 AVRRDCIQYVE 229
V C +++
Sbjct: 289 EVLDICSRFMN 299
>gi|222622462|gb|EEE56594.1| hypothetical protein OsJ_05954 [Oryza sativa Japonica Group]
Length = 579
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 51/87 (58%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ +Y+ + LGK KQ++ LF ++K G+ PD Y MI Y +VG++DKA E +
Sbjct: 369 DVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELF 428
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGE 213
E M+AS C P +T+ LI L G+
Sbjct: 429 EVMEASSCKPDVVTYNSLINCLGKHGD 455
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 54/91 (59%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ +I LGK+ + A LF E++++G DPD Y+ +I + + ++ A
Sbjct: 437 KPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACS 496
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ M + GCTP+ +T+ IL+ LE G+ E
Sbjct: 497 LFDEMISEGCTPNIVTYNILLDCLERRGKTE 527
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 1/143 (0%)
Query: 64 IQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVW 123
I + + L +S+L E ++ C+ + L + +LD A +F + +E
Sbjct: 412 ISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEM-QEKG 470
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y PD+ YS +I GK+ ++ MA LF E+ EG P+ Y ++ + G ++A
Sbjct: 471 YDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAH 530
Query: 184 ETYETMKASGCTPHKLTFTILIR 206
+ YETMK G P +T++IL R
Sbjct: 531 KLYETMKQQGLIPDSITYSILER 553
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 42/73 (57%)
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
++++++ +++ E++++G D Y ++ + GM+D+A + +E MK C P
Sbjct: 140 RSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPDAY 199
Query: 200 TFTILIRNLENAG 212
T+TILIR AG
Sbjct: 200 TYTILIRMSGKAG 212
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R E+ +V+ +R++ YK D+ Y+ ++ L K + A ++F ++K++ PD
Sbjct: 140 RSREVSKGFQVYEEMRRK-GYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPDA 198
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
YT +I + + G K + ++ M + GC + + F +I L G+ ++V V
Sbjct: 199 YTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEAL---GKNKMVDKV 252
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L + +D A +VF ++++ PD Y+ +I M GK + + F E+ +G
Sbjct: 170 LDALAKAGMVDQAFQVFEDMKQKHCV-PDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKG 228
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
+ + +I + M+DK + M + C P++ T++I + L G+ +
Sbjct: 229 CVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLN 288
Query: 219 AVRRDCIQYVE 229
V C +++
Sbjct: 289 EVLDICSRFMN 299
>gi|302792401|ref|XP_002977966.1| hypothetical protein SELMODRAFT_417819 [Selaginella moellendorffii]
gi|300153987|gb|EFJ20623.1| hypothetical protein SELMODRAFT_417819 [Selaginella moellendorffii]
Length = 234
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 71/158 (44%), Gaps = 4/158 (2%)
Query: 59 LSSEAIQAVHAMKLAKSS-SKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNF 117
+S E + MK AK +L+ ++ + RLL+ +L+ R E+DLA +F
Sbjct: 49 MSLETVSVATMMKKAKGDPDRLKSVLRTSVSRLLREELMSLFWVFVRAKEMDLAELIFGL 108
Query: 118 VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC---ELKKEGLDPDTRVYTEMIGVYL 174
+RKE WYKP SLY +I + E +F E ++EGL P+ + I +
Sbjct: 109 IRKESWYKPQASLYLHLITAYSERLDSKAMERIFQLLDESEEEGLIPNVFSFQTPIQACV 168
Query: 175 QVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
D M Y+ M AS C + L R E AG
Sbjct: 169 SSTDFDACMTLYDRMHASTCRKDVRFYMYLTRKFEEAG 206
>gi|168062855|ref|XP_001783392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665090|gb|EDQ51786.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 540
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 55/98 (56%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ +Y+ +IL GK + A + F +LK EGL PD+ Y ++ +VG IDK ET
Sbjct: 92 PDIVIYNILILEYGKRGNFSQAMKYFSQLKDEGLLPDSGTYCAVLSACRKVGNIDKGNET 151
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
+ M+ +G P ++ ++ILI AG E AA R+
Sbjct: 152 LKEMREAGIKPDQVAYSILIDMFGKAGRHEDAAATFRE 189
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
K +L +Y+ M+ M GK +I AE L ELK L PDT YT +I Y ++G ++ +
Sbjct: 371 KGNLIVYNTMLDMYGKAGRINDAERLMAELKDSKLVPDTVTYTTLINAYNRLGRFEECIR 430
Query: 185 TYETMKASGCTPHKLTFTILI 205
+E +A G ++ I+I
Sbjct: 431 VFEQHRADGLKLDRILVAIMI 451
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E KPD YS +I M GK + A F EL+ G PD+ Y +I + +VGM+
Sbjct: 156 REAGIKPDQVAYSILIDMFGKAGRHEDAAATFRELQMSGYLPDSVAYNTLIHAFAKVGMV 215
Query: 180 DKAMETYETMKASGCTPHKLTFTILIR 206
D+A ++ + S C + F +I+
Sbjct: 216 DQATLVFKEAQRSFCLDDPVIFYTMIQ 242
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 8/152 (5%)
Query: 78 KLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILM 137
KL E Q CR ++ + L + A ++ +R ++ ++ ++ YS +I M
Sbjct: 290 KLFEEMQESNCRFGESTYITMLNVYSKAGFHSAAEELLAKMR-QLGFRRNVVAYSTLIDM 348
Query: 138 LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH 197
GK ++ A LF +K++G + VY M+ +Y + G I+ A +K S P
Sbjct: 349 YGKVGKLQEATRLFSTMKQQGCKGNLIVYNTMLDMYGKAGRINDAERLMAELKDSKLVPD 408
Query: 198 KLTFTILIRNLENAGEEELVAAVRRDCIQYVE 229
+T+T LI G E +CI+ E
Sbjct: 409 TVTYTTLINAYNRLGRFE-------ECIRVFE 433
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ E ++ A+K F+ ++ E PD Y ++ K I E E+++ G
Sbjct: 101 ILEYGKRGNFSQAMKYFSQLKDEGLL-PDSGTYCAVLSACRKVGNIDKGNETLKEMREAG 159
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ PD Y+ +I ++ + G + A T+ ++ SG P + + LI G
Sbjct: 160 IKPDQVAYSILIDMFGKAGRHEDAAATFRELQMSGYLPDSVAYNTLIHAFAKVG 213
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 43/96 (44%)
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
++++ + +V+ + ++P LY L + ++ E L E+ + PD + Y +
Sbjct: 6 VSVEFYKWVKSQDGFEPHFHLYVAFAHCLMRVQKWVALEILVDEMIGKNCPPDIKFYALV 65
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
I + G A + MK GC P + + ILI
Sbjct: 66 IKEAINTGRFQTAQHWFSKMKLLGCPPDIVIYNILI 101
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
K D L + MI + GK +Q + EL + K G+ PDTR+ ++ +Y GM + A E
Sbjct: 441 KLDRILVAIMINVYGKARQYSKLAELLEVMPKSGIQPDTRILKTVVEIYEDGGMCENAAE 500
>gi|302766721|ref|XP_002966781.1| hypothetical protein SELMODRAFT_407940 [Selaginella moellendorffii]
gi|300166201|gb|EFJ32808.1| hypothetical protein SELMODRAFT_407940 [Selaginella moellendorffii]
Length = 234
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 71/158 (44%), Gaps = 4/158 (2%)
Query: 59 LSSEAIQAVHAMKLAKSS-SKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNF 117
+S E + MK AK +L+ ++ + RLL +L+ R E+DLA +F
Sbjct: 49 MSLETVSVATMMKKAKGDPDRLKSVLRTSVSRLLTKELMSLFWVFVRAKEMDLAELIFGL 108
Query: 118 VRKEVWYKPDLSLYSDMILMLGK---NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYL 174
VRKE WYKP SLY +I + +K + +L E ++EGL P+ + I +
Sbjct: 109 VRKESWYKPQASLYLHLITAYSERLDSKAMERIFQLLDESEEEGLIPNVFSFQTPIQACV 168
Query: 175 QVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
D M Y M AS C + L R E AG
Sbjct: 169 SSNDFDACMRLYNRMHASTCRKDVRFYMYLTRKFEEAG 206
>gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 642
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 6/161 (3%)
Query: 58 VLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNF 117
V+ SE ++A+ K+ + + + R C+ + + L ++ + + +V+
Sbjct: 163 VVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTE 222
Query: 118 VRKEVWYKPDLSLYSDMILM---LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYL 174
+ E PD YS +I LG+N A LF E+K + P ++YT ++G+Y
Sbjct: 223 MCNEGDCFPDTITYSALISSYEKLGRNDS---AIRLFDEMKDNCMQPTEKIYTTLLGIYF 279
Query: 175 QVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+VG ++KA++ +E MK +GC+P T+T LI+ L AG E
Sbjct: 280 KVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVE 320
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E + P + Y +I LGK K+ A ELF ELK+ + +RVY MI + + G +
Sbjct: 437 EKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLS 496
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+A++ + MK G P + L+ + AG
Sbjct: 497 EAVDLFNEMKNQGSGPDVYAYNALMSGMVKAG 528
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Query: 80 EEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
E+GF C L++ L + +R + K KE + +Y+ MI G
Sbjct: 437 EKGFPP--CPAAYCSLINALGKAKRYEAANELFKEL----KENFGNVSSRVYAVMIKHFG 490
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
K +++ A +LF E+K +G PD Y ++ ++ GM+++A M+ +GCT
Sbjct: 491 KCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMVNEANSLLRKMEENGCTADIN 550
Query: 200 TFTILIRNLENAG 212
+ I++ G
Sbjct: 551 SHNIILNGFARTG 563
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
D A+++F+ + K+ +P +Y+ ++ + K ++ A +LF E+K+ G P YTE
Sbjct: 250 DSAIRLFDEM-KDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTE 308
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210
+I + G +++A + Y+ M G TP + + NL N
Sbjct: 309 LIKGLGKAGRVEEAYDLYKNMLTDGLTPD----VVFLNNLMN 346
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 43/83 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + Y+++I LGK ++ A +L+ + +GL PD ++ + +VG +++
Sbjct: 301 PTVYTYTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNLMNILGKVGRLEELTNV 360
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ M CTP +++ +I+ L
Sbjct: 361 FNEMGTWRCTPTVVSYNTVIKAL 383
>gi|255574572|ref|XP_002528197.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532409|gb|EEF34204.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 642
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 82/171 (47%)
Query: 56 SRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVF 115
S V SE ++ + K+ + + + R C+ + L+++ L+ +++
Sbjct: 162 SSVYLSEIVKLLGKAKMVNKALSVFYQIKGRKCKPAATTYNSMILMLKQEGHLEKVHEIY 221
Query: 116 NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175
N + + PD YS +I GK A LF E+K+ GL P ++YT ++G+Y +
Sbjct: 222 NEMCNDGNCFPDTVTYSALISAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFK 281
Query: 176 VGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
+ ++KA++ + MK GCT T+T I+ L AG + V D I+
Sbjct: 282 LDKVEKALDVIKEMKDKGCTLTVFTYTEWIKGLGKAGRVDDAYRVFLDMIK 332
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 12/136 (8%)
Query: 80 EEGFQSRICRLLKADLLDTLTELRR---QNELDLALKVFNFVRKEVWYKPDLSLYSDMIL 136
E+GF C L+++L +++R NEL L LK E +Y+ MI
Sbjct: 438 EKGFPP--CPAAYCSLINSLGKVKRYEAANELFLELK-------ENCGHSSARVYAVMIK 488
Query: 137 MLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP 196
GK +++ A +LF E++K G PD Y ++ ++ GMID+A TM +GC+P
Sbjct: 489 HFGKCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVRAGMIDEAQSLLRTMDENGCSP 548
Query: 197 HKLTFTILIRNLENAG 212
+ I++ L G
Sbjct: 549 DLNSHNIILNGLARTG 564
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 44/78 (56%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y++ I LGK ++ A +F ++ K+G PD + +I + +VG ++ ++ + M+
Sbjct: 307 YTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLEVTLKLFRKME 366
Query: 191 ASGCTPHKLTFTILIRNL 208
+ C P+ +T+ +I+ L
Sbjct: 367 SWQCKPNVVTYNTVIKAL 384
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
L A+ +FN + K + KPD+ Y+ ++ + + I A+ L + + G PD +
Sbjct: 496 LSEAVDLFNEMEK-LGSKPDVYAYNALMSGMVRAGMIDEAQSLLRTMDENGCSPDLNSHN 554
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
++ + G+ D+A+E + MK+S P +++ ++ L +AG E A + R+
Sbjct: 555 IILNGLARTGVPDRAIEMFAKMKSSIIKPDAVSYNTVLGCLSHAGLFEEAAKLMRE 610
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 88 CRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMA 147
C L + + L + +D A +VF + K+ KPD+ L + +I +LGK ++ +
Sbjct: 300 CTLTVFTYTEWIKGLGKAGRVDDAYRVFLDMIKD-GCKPDVVLINSLINILGKVGRLEVT 358
Query: 148 EELFCELKKEGLDPDTRVYTEMIGVYLQV-GMIDKAMETYETMKASGCTPHKLTFTILI 205
+LF +++ P+ Y +I + +A +E MK G P T++ILI
Sbjct: 359 LKLFRKMESWQCKPNVVTYNTVIKALFECKAPASEAASWFEKMKGCGIAPSSFTYSILI 417
Score = 36.6 bits (83), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 45/95 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL+ ++ ++ L + A E+F ++K + PD Y ++G G+ ++A +
Sbjct: 548 PDLNSHNIILNGLARTGVPDRAIEMFAKMKSSIIKPDAVSYNTVLGCLSHAGLFEEAAKL 607
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
M G + +T+T ++ + E+ AA+
Sbjct: 608 MREMNLKGFEYNNITYTSILEAVGKVDEDRAPAAL 642
>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 80/166 (48%)
Query: 61 SEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRK 120
SE ++ + +K+ + + + R CR + L ++ + +++N +
Sbjct: 164 SEIVKILGRVKMVNKALSIFYQVKGRKCRPTAGTYNSVILMLMQEGHHEKVHELYNEMCS 223
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E PD YS +I GK + A LF E+K+ GL P ++YT ++G+Y ++G ++
Sbjct: 224 EGHCFPDTVTYSALISAFGKLNRDDSAVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVE 283
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
+A+ M+ C P T+T LIR L +G E V ++ ++
Sbjct: 284 EALNLVHEMRMRRCVPTVYTYTELIRGLGKSGRVEDAYGVYKNMLK 329
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 80 EEGFQSRICRLLKADLLDTLTELRR---QNELDLALKVFNFVRKEVWYKPDLSLYSDMIL 136
E+GF C L+++L + +R NEL LK E + +Y+ MI
Sbjct: 435 EKGFPP--CPAAYCSLINSLGKAKRYEAANELFQELK-------ENCGSSSVRVYAVMIK 485
Query: 137 MLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP 196
GK + A LF E+KK G PD Y +I ++ M+D+A + TM+ +GC P
Sbjct: 486 HFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMVRADMMDEAFSLFRTMEENGCNP 545
Query: 197 HKLTFTILIRNLENAG 212
+ I++ L G
Sbjct: 546 DINSHNIILNGLARTG 561
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 48/83 (57%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + Y+++I LGK+ ++ A ++ + K+G PD + +I + + + +A+E
Sbjct: 299 PTVYTYTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVEL 358
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+E M+ CTP+ +T+ +I++L
Sbjct: 359 FEEMRLLNCTPNVVTYNTIIKSL 381
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI-GVYLQVGMIDKAM 183
KPD+ L +++I +LG++ ++ A ELF E++ P+ Y +I ++ +A
Sbjct: 333 KPDVVLMNNLINILGRSDRLKEAVELFEEMRLLNCTPNVVTYNTIIKSLFEDKAPPSEAS 392
Query: 184 ETYETMKASGCTPHKLTFTILI 205
E MK G P T++ILI
Sbjct: 393 SWLERMKKDGVVPSSFTYSILI 414
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A+ +FN ++K + PD+ Y+ +I + + + A LF +++ G +PD + ++
Sbjct: 496 AMGLFNEMKK-LGCIPDVYAYNALITGMVRADMMDEAFSLFRTMEENGCNPDINSHNIIL 554
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ G +AME + MK+S P +++ ++ L AG
Sbjct: 555 NGLARTGGPKRAMEMFAKMKSSTIKPDAVSYNTVLGCLSRAG 596
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+T + R + +D A +F + +E PD++ ++ ++ L + A E+F ++K
Sbjct: 519 ITGMVRADMMDEAFSLFRTM-EENGCNPDINSHNIILNGLARTGGPKRAMEMFAKMKSST 577
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
+ PD Y ++G + G+ ++A + + M + G +T++ ++ + E+ +A
Sbjct: 578 IKPDAVSYNTVLGCLSRAGLFEEATKLMKEMNSKGFEYDLITYSSILEAVGKVDEDRNMA 637
>gi|225445222|ref|XP_002280919.1| PREDICTED: pentatricopeptide repeat-containing protein At5g21222
[Vitis vinifera]
gi|297738818|emb|CBI28063.3| unnamed protein product [Vitis vinifera]
Length = 636
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 14/155 (9%)
Query: 71 KLAKSSSKLEEGFQSRI--------CRLLKA--DLLDTLTELRRQNELDLALKVFNFVRK 120
+L S+ ++ QSR CR +++ L++ L E + E L +FN + +
Sbjct: 43 QLQSVSTSMDSQIQSRCLVCLGNNSCRTVRSRTKLMNILIEKGKPQEAQL---IFNSLTE 99
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E ++P L Y+ ++ L + K+ L +L+K GL PD+ + MI + + G +
Sbjct: 100 E-GHRPTLITYTTLLAALTRQKRFKSIPSLISKLEKNGLKPDSVFFNAMINAFSESGNVK 158
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+AM+ + MK GC P TF LI+ NAG E
Sbjct: 159 EAMKIFRKMKDRGCKPTTSTFNTLIKGYGNAGMPE 193
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+ ++ + +D AL + +E KPD+ +S ++ + +E+F ++
Sbjct: 323 LIKGFLDITDTDGVDEALTLM----EEFGVKPDVVTFSTIMNAWSSVGLMDKCQEIFDDM 378
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
K G++PD ++ + Y++ G +KA M SG P+ + FT +I +AG+
Sbjct: 379 VKAGIEPDIHAFSILAKGYVRAGEPEKAESLLTAMGKSGVQPNVVIFTTIISGWCSAGKM 438
Query: 215 ELVAAV 220
E + V
Sbjct: 439 EYASRV 444
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+L +++ +I +E +++ G+ PD ++ ++ + VG++DK E
Sbjct: 315 PNLVIFNSLIKGFLDITDTDGVDEALTLMEEFGVKPDVVTFSTIMNAWSSVGLMDKCQEI 374
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRRDCIQ 226
++ M +G P F+IL + AGE E L+ A+ + +Q
Sbjct: 375 FDDMVKAGIEPDIHAFSILAKGYVRAGEPEKAESLLTAMGKSGVQ 419
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ +S + + + AE L + K G+ P+ ++T +I + G ++ A
Sbjct: 384 EPDIHAFSILAKGYVRAGEPEKAESLLTAMGKSGVQPNVVIFTTIISGWCSAGKMEYASR 443
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
YE M G P+ TF LI A E +
Sbjct: 444 VYEKMCEMGICPNLKTFETLIWGYGEAKEPQ 474
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD ++ MI ++ + A ++F ++K G P T + +I Y GM ++ ++
Sbjct: 138 KPDSVFFNAMINAFSESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGYGNAGMPEECLK 197
Query: 185 TYETM-KASGCTPHKLTFTILIR 206
+ M + P+ TF LIR
Sbjct: 198 LLDLMSQEENVKPNDRTFNSLIR 220
>gi|15221893|ref|NP_173324.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|42571539|ref|NP_973860.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75151479|sp|Q8GYP6.1|PPR49_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18900
gi|26450017|dbj|BAC42129.1| unknown protein [Arabidopsis thaliana]
gi|28827402|gb|AAO50545.1| unknown protein [Arabidopsis thaliana]
gi|332191657|gb|AEE29778.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332191658|gb|AEE29779.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 860
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 63/122 (51%)
Query: 91 LKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEEL 150
L+ D L++ N+ AL F +++++ +K D Y+ M+ LG+ KQ +L
Sbjct: 327 LRIDAYQANQVLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKL 386
Query: 151 FCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210
E+ ++G P+T Y +I Y + +++AM + M+ +GC P ++T+ LI
Sbjct: 387 LDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAK 446
Query: 211 AG 212
AG
Sbjct: 447 AG 448
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 24/161 (14%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R N L+ A+ VFN + +E KPD Y +I + K + +A +++ ++ GL PDT
Sbjct: 411 RANYLNEAMNVFNQM-QEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDT 469
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTI----------------LIRN 207
Y+ +I + G + A + + M GCTP+ +T+ I L R+
Sbjct: 470 FTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRD 529
Query: 208 LENAGEE------ELVAAVRRDCIQYVEFPERFLEEVYQKH 242
++NAG E +V V C Y+E E E+ QK+
Sbjct: 530 MQNAGFEPDKVTYSIVMEVLGHC-GYLEEAEAVFTEMQQKN 569
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 4/132 (3%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
LD+A+ ++ ++ PD YS +I LGK + A +LFCE+ +G P+ Y
Sbjct: 450 LDIAMDMYQRMQAG-GLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYN 508
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227
M+ ++ + A++ Y M+ +G P K+T++I++ L + G E AV + Q
Sbjct: 509 IMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQK 568
Query: 228 VEFPERFLEEVY 239
P+ E VY
Sbjct: 569 NWIPD---EPVY 577
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
ALK++ + + ++PD YS ++ +LG + AE +F E++++ PD VY ++
Sbjct: 523 ALKLYRDM-QNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLV 581
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
++ + G ++KA + Y+ M +G P+ T L+
Sbjct: 582 DLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLL 616
>gi|297844848|ref|XP_002890305.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336147|gb|EFH66564.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 860
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 63/122 (51%)
Query: 91 LKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEEL 150
L+ D L++ N+ AL F +++++ +K D Y+ M+ LG+ KQ +L
Sbjct: 327 LRIDAYQANQVLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKL 386
Query: 151 FCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210
E+ ++G P+T Y +I Y + +++AM + M+ +GC P ++T+ LI
Sbjct: 387 LDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAK 446
Query: 211 AG 212
AG
Sbjct: 447 AG 448
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 24/161 (14%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R N L+ A+ VFN + +E KPD Y +I + K + +A +++ ++ GL PDT
Sbjct: 411 RANYLNEAMNVFNQM-QEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDT 469
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTI----------------LIRN 207
Y+ +I + G + A + + M GCTP+ +T+ I L R+
Sbjct: 470 FTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQSALKLYRD 529
Query: 208 LENAGEE------ELVAAVRRDCIQYVEFPERFLEEVYQKH 242
++NAG E +V V C Y+E E E+ QK+
Sbjct: 530 MQNAGFEPDKVTYSIVMEVLGHC-GYLEEAEAVFTEMQQKN 569
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 4/132 (3%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
LD+A+ ++ ++ PD YS +I LGK + A +LFCE+ +G P+ Y
Sbjct: 450 LDIAMDMYQRMQAG-GLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYN 508
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227
M+ ++ + A++ Y M+ +G P K+T++I++ L + G E AV + Q
Sbjct: 509 IMMDLHAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQK 568
Query: 228 VEFPERFLEEVY 239
P+ E VY
Sbjct: 569 NWIPD---EPVY 577
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
ALK++ + + ++PD YS ++ +LG + AE +F E++++ PD VY ++
Sbjct: 523 ALKLYRDM-QNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLV 581
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
++ + G ++KA + Y+ M +G P+ T L+
Sbjct: 582 DLWGKAGNVEKAWQWYQAMLHAGLLPNVPTCNSLL 616
>gi|8778269|gb|AAF79278.1|AC068602_1 F14D16.2 [Arabidopsis thaliana]
Length = 977
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 63/122 (51%)
Query: 91 LKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEEL 150
L+ D L++ N+ AL F +++++ +K D Y+ M+ LG+ KQ +L
Sbjct: 444 LRIDAYQANQVLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKL 503
Query: 151 FCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210
E+ ++G P+T Y +I Y + +++AM + M+ +GC P ++T+ LI
Sbjct: 504 LDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAK 563
Query: 211 AG 212
AG
Sbjct: 564 AG 565
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 24/161 (14%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R N L+ A+ VFN + +E KPD Y +I + K + +A +++ ++ GL PDT
Sbjct: 528 RANYLNEAMNVFNQM-QEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDT 586
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTI----------------LIRN 207
Y+ +I + G + A + + M GCTP+ +T+ I L R+
Sbjct: 587 FTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRD 646
Query: 208 LENAGEE------ELVAAVRRDCIQYVEFPERFLEEVYQKH 242
++NAG E +V V C Y+E E E+ QK+
Sbjct: 647 MQNAGFEPDKVTYSIVMEVLGHC-GYLEEAEAVFTEMQQKN 686
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 4/132 (3%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
LD+A+ ++ ++ PD YS +I LGK + A +LFCE+ +G P+ Y
Sbjct: 567 LDIAMDMYQRMQAG-GLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYN 625
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227
M+ ++ + A++ Y M+ +G P K+T++I++ L + G E AV + Q
Sbjct: 626 IMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQK 685
Query: 228 VEFPERFLEEVY 239
P+ E VY
Sbjct: 686 NWIPD---EPVY 694
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 46/82 (56%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++PD YS ++ +LG + AE +F E++++ PD VY ++ ++ + G ++KA
Sbjct: 652 FEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAW 711
Query: 184 ETYETMKASGCTPHKLTFTILI 205
+ Y+ M +G P+ T L+
Sbjct: 712 QWYQAMLHAGLRPNVPTCNSLL 733
>gi|226500056|ref|NP_001147821.1| pentatricopeptide repeat 2 [Zea mays]
gi|195613946|gb|ACG28803.1| PPR2 [Zea mays]
Length = 562
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL+VF ++++ +Y P Y +I++LG++ Q A +LF E+ ++G P +YT +I
Sbjct: 191 ALQVFEMLKEQPFYHPKEGTYMKLIVLLGRSGQPTRAHQLFDEMLQQGCQPTPELYTALI 250
Query: 171 GVYLQVGMIDKAMETYETMKASG-CTPHKLTFTILIRNLENAGEEELVAAVRRD 223
G Y + ++D+A++ MK+S C P T++ +I+ +A +L + +D
Sbjct: 251 GAYCRSCLLDEALQLLNDMKSSPLCQPDVYTYSTIIKACVDAARFDLTDTMYKD 304
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 51/115 (44%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L+ + LD +V + + V KPD+ + ++ + G ++ + E + + + G
Sbjct: 321 LSGYGKAGRLDDMERVLSDMLDSVSCKPDVWTMNIILSLFGNRGEVELMERWYEKFRGYG 380
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
++P+TR +IG Y + M DK E M+ T+ +I AG+
Sbjct: 381 VEPETRTLNILIGAYGKRRMYDKMSAVMEHMRKLAFPWTTATYNNVIEAFAEAGD 435
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
LD AL++ N ++ +PD+ YS +I + + + ++ ++ + + P+T
Sbjct: 259 LDEALQLLNDMKSSPLCQPDVYTYSTIIKACVDAARFDLTDTMYKDMAERSISPNTVTQN 318
Query: 168 EMIGVYLQVGMIDKAMETYETMKAS-GCTPHKLTFTILIRNLENAGEEELV 217
++ Y + G +D M S C P T I++ N GE EL+
Sbjct: 319 IVLSGYGKAGRLDDMERVLSDMLDSVSCKPDVWTMNIILSLFGNRGEVELM 369
>gi|302817236|ref|XP_002990294.1| hypothetical protein SELMODRAFT_131439 [Selaginella moellendorffii]
gi|300141856|gb|EFJ08563.1| hypothetical protein SELMODRAFT_131439 [Selaginella moellendorffii]
Length = 1139
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P L Y MI + K+ + AE++F +LK G PD +VY++M+ Y + GM + A +
Sbjct: 893 RPSLQTYDTMISVFAKSGRTRDAEKMFKDLKSAGFQPDEKVYSQMMNCYAKSGMYEHAAD 952
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
+E MK G PH++++ LI AG+
Sbjct: 953 LFEAMKLRGLRPHEVSYNNLIDAYARAGQ 981
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 62/112 (55%)
Query: 100 TELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGL 159
T L+ Q A + F +++ ++ Y P + +YS ++ + G++KQI +AE F E+ + L
Sbjct: 244 TVLKWQQGWKEAQEFFAWMKLQLSYIPSVIVYSMLLKVYGRDKQIGLAEAAFQEMLDQKL 303
Query: 160 DPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
DPD ++ MI Y M D+ + YE M + G P +T+T ++ +L A
Sbjct: 304 DPDEVAFSTMILNYANAEMFDEMLTMYEAMMSRGIVPSSVTYTTMLIHLNKA 355
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
DL Y+D++ + + + A+ LF +LK + PD + M+ +Y M+ A E
Sbjct: 585 DLMAYNDVLSLYAEFDMLEDAKLLFQQLKSSSIQPDQVWFGTMVKLYCNANMVAAAEEVL 644
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
M+ G TP +T ILI A E A +
Sbjct: 645 RQMREKGFTPDHITQGILINAYGEANRIEEAAGL 678
>gi|225438599|ref|XP_002276540.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic [Vitis vinifera]
gi|296082481|emb|CBI21486.3| unnamed protein product [Vitis vinifera]
Length = 489
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 5/139 (3%)
Query: 101 ELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD 160
EL + ++ L+VF +++K+ WY D +YS +I ++GK Q MA LF E++ G
Sbjct: 107 ELGKTDKWLQCLEVFRWMQKQRWYIADNGVYSKLISVMGKKGQTRMAMWLFSEMRNSGCR 166
Query: 161 PDTRVYTEMIGVYL----QVGMIDKAMETYETMKA-SGCTPHKLTFTILIRNLENAGEEE 215
PDT VY +I +L + + KA+ ++ MK C P+ +T+ IL+R A
Sbjct: 167 PDTSVYNALITAHLHSRDKSKALIKALGYFDKMKGMERCKPNIVTYNILLRAFAQAQNVN 226
Query: 216 LVAAVRRDCIQYVEFPERF 234
A+ ++ + + P+ F
Sbjct: 227 QANALFKELNESIVSPDIF 245
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL F+ ++ KP++ Y+ ++ + + + A LF EL + + PD + ++
Sbjct: 192 ALGYFDKMKGMERCKPNIVTYNILLRAFAQAQNVNQANALFKELNESIVSPDIFTFNGVM 251
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y + GMI + MK++ C P +TF +LI
Sbjct: 252 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNVLI 286
>gi|334182677|ref|NP_001185030.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332191659|gb|AEE29780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 886
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 63/122 (51%)
Query: 91 LKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEEL 150
L+ D L++ N+ AL F +++++ +K D Y+ M+ LG+ KQ +L
Sbjct: 327 LRIDAYQANQVLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKL 386
Query: 151 FCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210
E+ ++G P+T Y +I Y + +++AM + M+ +GC P ++T+ LI
Sbjct: 387 LDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAK 446
Query: 211 AG 212
AG
Sbjct: 447 AG 448
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 24/161 (14%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R N L+ A+ VFN + +E KPD Y +I + K + +A +++ ++ GL PDT
Sbjct: 411 RANYLNEAMNVFNQM-QEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDT 469
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTI----------------LIRN 207
Y+ +I + G + A + + M GCTP+ +T+ I L R+
Sbjct: 470 FTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRD 529
Query: 208 LENAGEE------ELVAAVRRDCIQYVEFPERFLEEVYQKH 242
++NAG E +V V C Y+E E E+ QK+
Sbjct: 530 MQNAGFEPDKVTYSIVMEVLGHC-GYLEEAEAVFTEMQQKN 569
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 4/132 (3%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
LD+A+ ++ ++ PD YS +I LGK + A +LFCE+ +G P+ Y
Sbjct: 450 LDIAMDMYQRMQAG-GLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYN 508
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227
M+ ++ + A++ Y M+ +G P K+T++I++ L + G E AV + Q
Sbjct: 509 IMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQK 568
Query: 228 VEFPERFLEEVY 239
P+ E VY
Sbjct: 569 NWIPD---EPVY 577
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
ALK++ + + ++PD YS ++ +LG + AE +F E++++ PD VY ++
Sbjct: 523 ALKLYRDM-QNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLV 581
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
++ + G ++KA + Y+ M +G P+ T L+
Sbjct: 582 DLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLL 616
>gi|302794911|ref|XP_002979219.1| hypothetical protein SELMODRAFT_110655 [Selaginella moellendorffii]
gi|300152987|gb|EFJ19627.1| hypothetical protein SELMODRAFT_110655 [Selaginella moellendorffii]
Length = 1143
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 9/124 (7%)
Query: 90 LLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEE 149
++KADL R L A+ ++ + + +P L Y MI + K+ + AE+
Sbjct: 868 IIKADL--------RAGRLKKAIDTYSSL-TNLGLRPSLQTYDTMISVFAKSGRTRDAEK 918
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209
+F +LK G PD +VY++M+ Y + GM + A + +E MK G PH++++ LI
Sbjct: 919 MFKDLKSAGFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMKLRGLRPHEVSYNNLIDAYA 978
Query: 210 NAGE 213
AG+
Sbjct: 979 RAGQ 982
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 62/112 (55%)
Query: 100 TELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGL 159
T L+ Q A + F +++ ++ Y P + +YS ++ + G++KQI +AE F E+ + L
Sbjct: 248 TVLKWQQGWKEAQEFFAWMKLQLSYIPSVIVYSMLLKVYGRDKQIGLAEAAFQEMLDQKL 307
Query: 160 DPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
DPD ++ MI Y M D+ + YE M + G P +T+T ++ +L A
Sbjct: 308 DPDEVAFSTMILNYANAEMFDEMLTMYEAMMSRGIVPSSVTYTTMLIHLNKA 359
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
DL Y+DM+ + + + A+ LF +LK + PD + M+ +Y M+ A E
Sbjct: 589 DLMAYNDMLSLYAEFDMLEDAKLLFQQLKSSSIQPDQVWFGTMVKLYCNANMVAAAEEVL 648
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
M+ G TP +T ILI A E A +
Sbjct: 649 RQMREKGFTPDHITQGILINAYGEANRIEEAAGL 682
>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+Q L A ++F + + KP+L +Y+ +I + K+ + A +LF EL GL PD
Sbjct: 453 KQGYLGKAFRLFR-AMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDV 511
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
++YT +I + G++D+A+E + M+ GC P++ ++ ++IR
Sbjct: 512 QIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGF 556
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ YS +I K+I A++LF E+ +GL P+T YT +I + Q+G + +A E
Sbjct: 368 KPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARE 427
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
++ M +G P T+++L+ G
Sbjct: 428 LFKDMHTNGYLPDLCTYSVLLEGFCKQG 455
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 47/84 (55%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ Y+ +I L K + A A L ++ + G PD Y+ +I + ++++A++
Sbjct: 193 QPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALD 252
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
+ MKA G +P +++T LI+ L
Sbjct: 253 IFSYMKAKGISPTVVSYTSLIQGL 276
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
+DL V V K + +P + ++ +I L K + A A ELF ++ G PD Y
Sbjct: 141 HVDLGFSVLAKVIK-LGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTY 199
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
T +I ++G A + M GC P +T++ LI +L
Sbjct: 200 TTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSL 241
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E+ +P++ Y+ ++ ++ A +LF + G PD Y+ +I Y V ID
Sbjct: 329 EMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRID 388
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+A + + M G TP+ +++T LI G+
Sbjct: 389 EAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGK 421
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%)
Query: 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF 201
+ + + + ++ K GL P +T +I + G +A+E ++ M A GC P T+
Sbjct: 140 QHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTY 199
Query: 202 TILIRNLENAGEEELVAAV 220
T +I L GE A +
Sbjct: 200 TTIINGLCKMGETAAAAGL 218
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
EV +PD+ YS +I L K++ + A ++F +K +G+ P YT +I
Sbjct: 224 EVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWK 283
Query: 181 KAMETYETMKASGCTPHKLTFTILI 205
+A M + P +TF++LI
Sbjct: 284 EASAMLNEMTSLNIMPDIVTFSLLI 308
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
+ L+D+L + R NE AL +F++++ + P + Y+ +I L + A +
Sbjct: 235 STLIDSLCKDRLVNE---ALDIFSYMKAK-GISPTVVSYTSLIQGLCSFSRWKEASAMLN 290
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN 207
E+ + PD ++ +I ++ + G + +A +TM G P+ +T+ L+
Sbjct: 291 EMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHG 345
>gi|15240032|ref|NP_196258.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171850|sp|Q9FNG8.1|PP366_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g06400, mitochondrial; Flags: Precursor
gi|9758420|dbj|BAB08962.1| unnamed protein product [Arabidopsis thaliana]
gi|332003627|gb|AED91010.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1030
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 62/107 (57%)
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
LA++ FN+V+++ + + +Y+ M+ + G+ + + M +EL E++K G D D R +T +
Sbjct: 171 LAMRFFNWVKQKDGFSHRVGIYNTMLSIAGEARNLDMVDELVSEMEKNGCDKDIRTWTIL 230
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
I VY + I K + +E M+ SG + I+IR+L AG +L
Sbjct: 231 ISVYGKAKKIGKGLLVFEKMRKSGFELDATAYNIMIRSLCIAGRGDL 277
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L ++ +L AL N + KE+ KP + +Y+ +I+ K KQ+ E +++ E +P
Sbjct: 864 LLQRGDLQKALDKVNSM-KEIGTKPGVHVYTSLIVYFFKEKQLEKVLETCQKMEGESCEP 922
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
YT MI Y+ +G +++A + M+ G +P T++ I L A + E
Sbjct: 923 SVVTYTAMICGYMSLGKVEEAWNAFRNMEERGTSPDFKTYSKFINCLCQACKSE 976
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D + ++ L + ++ A E+ +K+ LD D+ VY +I YL+ + KA+E +
Sbjct: 363 DAKYFEILVKGLCRANRMVDALEIVDIMKRRKLD-DSNVYGIIISGYLRQNDVSKALEQF 421
Query: 187 ETMKASGCTPHKLTFTILIRNL 208
E +K SG P T+T ++++L
Sbjct: 422 EVIKKSGRPPRVSTYTEIMQHL 443
>gi|147820978|emb|CAN74604.1| hypothetical protein VITISV_025315 [Vitis vinifera]
Length = 525
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
Query: 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKK 156
+ L++L + + AL+VF +R++ +Y+P Y ++++LGK+ Q A ELF + +
Sbjct: 113 EALSDLVLKKQWLQALEVFEMLREQPFYQPKEGTYMKLLVLLGKSGQPLRAHELFDTMVE 172
Query: 157 EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA-SGCTPHKLTFTILIRNLENAGEEE 215
EG +P T +YT ++ Y + +ID+A MK C P T++ L++ +A E
Sbjct: 173 EGCEPTTELYTALLASYCRSNLIDEAFSILNQMKTLPRCQPDVFTYSTLLKACVDASRFE 232
Query: 216 LVAAV 220
LV ++
Sbjct: 233 LVESL 237
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 35/149 (23%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L+ + + D KV + + + KPD+ + ++ + G QI + E+ + + + G
Sbjct: 257 LSGYGKAGKFDEMEKVLSGMLESTSSKPDVWTMNTILSLFGNKGQIEIMEKWYEKFRNFG 316
Query: 159 LDPDTRVYTEMIGVYLQVGMIDK---AME------------------------------- 184
++P+TR + +IG Y + M DK ME
Sbjct: 317 IEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFSDVGDAKNME 376
Query: 185 -TYETMKASGCTPHKLTFTILIRNLENAG 212
T++ M+A G TF LIR NAG
Sbjct: 377 YTFDQMRAEGMKADTKTFCCLIRGYANAG 405
>gi|28393724|gb|AAO42273.1| unknown protein [Arabidopsis thaliana]
Length = 642
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 6/174 (3%)
Query: 56 SRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVF 115
S + SE ++A+ K+ + + + R C+ + + L ++ + + +V+
Sbjct: 161 SPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVY 220
Query: 116 NFVRKEVWYKPDLSLYSDMILM---LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGV 172
+ E PD YS +I LG+N A LF E+K + P ++YT ++G+
Sbjct: 221 TEMCNEGDCFPDTITYSALISSYEKLGRNDS---AIRLFDEMKDNCMQPTEKIYTTLLGI 277
Query: 173 YLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
Y +VG ++KA++ +E MK +GC+P T+T LI+ L AG + +D ++
Sbjct: 278 YFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLR 331
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E + P + Y +I LGK K+ A+ELF ELK+ + +RVY MI + + G +
Sbjct: 437 EKGFPPCPAAYCSLINALGKAKRYEAADELFKELKENFGNVSSRVYAVMIKHFGKCGKLS 496
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+A++ + MK G P + L+ + AG
Sbjct: 497 EAVDLFNEMKNQGSGPDVYAYNALMSGMVKAG 528
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 6/133 (4%)
Query: 80 EEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
E+GF C L++ L + +R D K KE + +Y+ MI G
Sbjct: 437 EKGFPP--CPAAYCSLINALGKAKRYEAADELFKEL----KENFGNVSSRVYAVMIKHFG 490
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
K +++ A +LF E+K +G PD Y ++ ++ GMI++A M+ +GC
Sbjct: 491 KCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADIN 550
Query: 200 TFTILIRNLENAG 212
+ I++ G
Sbjct: 551 SHNIILNGFARTG 563
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+ + +L R D A+++F+ + K+ +P +Y+ ++ + K ++ A +LF E+
Sbjct: 239 LISSYEKLGRN---DSAIRLFDEM-KDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEM 294
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
K+ G P YTE+I + G +D+A Y+ M G TP + L+ L G
Sbjct: 295 KRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRV 354
Query: 215 ELVAAV 220
E + V
Sbjct: 355 EELTNV 360
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 43/83 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + Y+++I LGK ++ A + ++ ++GL PD ++ + +VG +++
Sbjct: 301 PTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNV 360
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ M CTP +++ +I+ L
Sbjct: 361 FSEMGMWRCTPTVVSYNTVIKAL 383
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/155 (20%), Positives = 66/155 (42%), Gaps = 14/155 (9%)
Query: 61 SEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRK 120
SEA+ + MK S + + + + ++KA +++ L R+ E
Sbjct: 496 SEAVDLFNEMKNQGSGPDVY-AYNALMSGMVKAGMINEANSLLRKME------------- 541
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E + D++ ++ ++ + A E+F +K G+ PD Y ++G + GM +
Sbjct: 542 ENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFE 601
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+A MK G +T++ ++ + N E+
Sbjct: 602 EAARMMREMKDKGFEYDAITYSSILDAVGNVDHEK 636
>gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010
gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana]
gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 642
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 6/174 (3%)
Query: 56 SRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVF 115
S + SE ++A+ K+ + + + R C+ + + L ++ + + +V+
Sbjct: 161 SPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVY 220
Query: 116 NFVRKEVWYKPDLSLYSDMILM---LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGV 172
+ E PD YS +I LG+N A LF E+K + P ++YT ++G+
Sbjct: 221 TEMCNEGDCFPDTITYSALISSYEKLGRNDS---AIRLFDEMKDNCMQPTEKIYTTLLGI 277
Query: 173 YLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
Y +VG ++KA++ +E MK +GC+P T+T LI+ L AG + +D ++
Sbjct: 278 YFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLR 331
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E + P + Y +I LGK K+ A ELF ELK+ + +RVY MI + + G +
Sbjct: 437 EKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLS 496
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+A++ + MK G P + L+ + AG
Sbjct: 497 EAVDLFNEMKNQGSGPDVYAYNALMSGMVKAG 528
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 6/133 (4%)
Query: 80 EEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
E+GF C L++ L + +R + K KE + +Y+ MI G
Sbjct: 437 EKGFPP--CPAAYCSLINALGKAKRYEAANELFKEL----KENFGNVSSRVYAVMIKHFG 490
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
K +++ A +LF E+K +G PD Y ++ ++ GMI++A M+ +GC
Sbjct: 491 KCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADIN 550
Query: 200 TFTILIRNLENAG 212
+ I++ G
Sbjct: 551 SHNIILNGFARTG 563
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+ + +L R D A+++F+ + K+ +P +Y+ ++ + K ++ A +LF E+
Sbjct: 239 LISSYEKLGRN---DSAIRLFDEM-KDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEM 294
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
K+ G P YTE+I + G +D+A Y+ M G TP + L+ L G
Sbjct: 295 KRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRV 354
Query: 215 ELVAAV 220
E + V
Sbjct: 355 EELTNV 360
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 43/83 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + Y+++I LGK ++ A + ++ ++GL PD ++ + +VG +++
Sbjct: 301 PTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNV 360
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ M CTP +++ +I+ L
Sbjct: 361 FSEMGMWRCTPTVVSYNTVIKAL 383
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/155 (20%), Positives = 66/155 (42%), Gaps = 14/155 (9%)
Query: 61 SEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRK 120
SEA+ + MK S + + + + ++KA +++ L R+ E
Sbjct: 496 SEAVDLFNEMKNQGSGPDVY-AYNALMSGMVKAGMINEANSLLRKME------------- 541
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E + D++ ++ ++ + A E+F +K G+ PD Y ++G + GM +
Sbjct: 542 ENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFE 601
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+A MK G +T++ ++ + N E+
Sbjct: 602 EAARMMREMKDKGFEYDAITYSSILDAVGNVDHEK 636
>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
Length = 616
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+Q L A ++F + + KP++ +Y+ +I + K++ + A +LF EL +GL P+
Sbjct: 484 KQGYLAKAFRLFR-AMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNV 542
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
++YT +I + G++D+A+E + M+ GC P++ ++ ++IR
Sbjct: 543 QIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGF 587
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y+PD+ Y+ +I L K + A LF ++ + G PD Y+ +I + +++A+
Sbjct: 223 YQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEAL 282
Query: 184 ETYETMKASGCTPHKLTFTILIRNLEN 210
+ + MKA G +P+ T+ LI+ L N
Sbjct: 283 DIFSYMKAKGISPNIFTYNSLIQGLCN 309
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ +I K K+I A++LF E+ +GL PD Y +I Q+G + +A +
Sbjct: 399 KPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHD 458
Query: 185 TYETMKASGCTPHKLTFTILI 205
++ M +G P T++IL+
Sbjct: 459 LFKNMLTNGNLPDLCTYSILL 479
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L++ +L+R +DL V + K + + + ++ +I L K + A ELF ++
Sbjct: 163 LINCFFQLQR---VDLGFSVLAKIIK-LGLQLTIVTFNTLINGLCKVGKFGQAVELFDDM 218
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
G PD YT +I ++G A + M +GC P +T++ +I +L
Sbjct: 219 VARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSL 272
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E+ +P++ YS ++ ++ A +LF + +G PD Y +I Y + I
Sbjct: 360 EMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIG 419
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+A + + M G TP +++ LI L G
Sbjct: 420 EAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLG 451
>gi|218192673|gb|EEC75100.1| hypothetical protein OsI_11265 [Oryza sativa Indica Group]
Length = 588
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL+VF ++++ +Y P + ++L+LG++ Q + A LF E+ ++G P +YT +I
Sbjct: 130 ALQVFQMLKEQPFYHPKEGTFMKLLLLLGRSGQPSRARYLFDEMLQQGCQPTPELYTALI 189
Query: 171 GVYLQVGMIDKAMETYETMKASG-CTPHKLTFTILIRNLENAGEEELVAAVRRD 223
Y + G++D A MKAS C P T++ +I+ +A ++V A+ +D
Sbjct: 190 AAYCRNGLLDDAFRLLADMKASPVCQPDVYTYSTIIKACVDASRFDIVDAMYKD 243
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L+ R LD KV + + KPD+ + ++ + G QI E+ + + + G
Sbjct: 260 LSGYGRAGRLDDMEKVLSAMLDSTTSKPDVWTMNIILSLFGNRGQIESMEKWYEKFRGYG 319
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
++P+TR +IG Y + M DK E M+ TF +I +AG+
Sbjct: 320 IEPETRTLNILIGAYGKKRMYDKMSAVMEYMRKLAFPWTTATFNNVIEAFADAGD 374
>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
Length = 1088
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + LAL++FN + ++ P+L YS +I LG+ ++ AE LF EL++ GL P
Sbjct: 780 LCKNGSTSLALEMFNKMIEQGCL-PNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIP 838
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210
D Y +MI Y+ G ++ A M +GC P T+ +LI+ L+N
Sbjct: 839 DEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKN 887
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 10/141 (7%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ +LD A + +++ +P++ Y+ +I L K + AEEL + +EG+ P+
Sbjct: 712 KDEKLDTATSLLEHMKRS-GCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNV 770
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE----EELVAA 219
YT MI + G A+E + M GC P+ LT++ LIR L G+ E L A
Sbjct: 771 VTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAE 830
Query: 220 VRR-----DCIQYVEFPERFL 235
+ R D I YV+ E ++
Sbjct: 831 LERHGLIPDEITYVKMIEAYI 851
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL++ + +R + KPD Y+++I K ++ A LF E+ +GL P+ YT +I
Sbjct: 649 ALRILDLMR-DGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALI 707
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN----AGEEEL 216
Y + +D A E MK SGC P+ T+ +LI L +G EEL
Sbjct: 708 DGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEEL 757
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 51/88 (57%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P+L +Y+ +I L K+ +A AE + ++ + + PDT YT MI + + +D A++
Sbjct: 382 QPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQ 441
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ M GC P+ +T++ LI L ++G
Sbjct: 442 VFNQMAKEGCEPNTVTYSTLINGLCDSG 469
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+++LD AL+VFN + KE +P+ YS +I L + ++ A +L E+ G+ P
Sbjct: 432 RKHDLDSALQVFNQMAKE-GCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTA 490
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
T I +G + A + MK GC P+ T+T LI L +G
Sbjct: 491 HTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSG 539
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
PD Y+ MIL + + A ++F ++ KEG +P+T Y+ +I G +++A +
Sbjct: 417 SPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFD 476
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
M G P T T I L + G
Sbjct: 477 LIREMILHGILPTAHTCTGPIIALCDMG 504
>gi|115452625|ref|NP_001049913.1| Os03g0309800 [Oryza sativa Japonica Group]
gi|108707769|gb|ABF95564.1| PPR2, putative, expressed [Oryza sativa Japonica Group]
gi|108707770|gb|ABF95565.1| PPR2, putative, expressed [Oryza sativa Japonica Group]
gi|108707771|gb|ABF95566.1| PPR2, putative, expressed [Oryza sativa Japonica Group]
gi|113548384|dbj|BAF11827.1| Os03g0309800 [Oryza sativa Japonica Group]
gi|125586018|gb|EAZ26682.1| hypothetical protein OsJ_10586 [Oryza sativa Japonica Group]
gi|215686360|dbj|BAG87621.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215741099|dbj|BAG97594.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767065|dbj|BAG99293.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767110|dbj|BAG99338.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 501
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL+VF ++++ +Y P + ++L+LG++ Q + A LF E+ ++G P +YT +I
Sbjct: 130 ALQVFQMLKEQPFYHPKEGTFMKLLLLLGRSGQPSRARYLFDEMLQQGCQPTPELYTALI 189
Query: 171 GVYLQVGMIDKAMETYETMKASG-CTPHKLTFTILIRNLENAGEEELVAAVRRD 223
Y + G++D A MKAS C P T++ +I+ +A ++V A+ +D
Sbjct: 190 AAYCRNGLLDDAFRLLADMKASPVCQPDVYTYSTIIKACVDASRFDIVDAMYKD 243
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L+ R LD KV + + KPD+ + ++ + G QI E+ + + + G
Sbjct: 260 LSGYGRAGRLDDMEKVLSAMLDSTTSKPDVWTMNIILSLFGNRGQIESMEKWYEKFRGYG 319
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
++P+TR +IG Y + M DK E M+ TF +I +AG+
Sbjct: 320 IEPETRTLNILIGAYGKKRMYDKMSAVMEYMRKLAFPWTTATFNNVIEAFADAGD 374
>gi|224098475|ref|XP_002334555.1| predicted protein [Populus trichocarpa]
gi|222873072|gb|EEF10203.1| predicted protein [Populus trichocarpa]
Length = 244
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 65/114 (57%), Gaps = 4/114 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LLD L +Q L A ++F ++ KPDL +Y+ ++ + K+ + A ELF EL
Sbjct: 105 LLDGLC---KQGYLGKAFRLFRAMQSSSL-KPDLVMYNILVDAMCKSGNLKDARELFSEL 160
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+GL P+ ++YT +I + G++D+A+E + M+ GC P + ++ ++IR
Sbjct: 161 FVKGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEFSYNVIIRGF 214
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
YKPD+ Y+ +I K +I A++L+ E+ +GL PD Y +I Q+G + +A
Sbjct: 25 YKPDVFCYNILINGYCKATRIDKAKQLYNEMILQGLTPDKVTYNTLIHGLCQLGRLREAQ 84
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAG 212
+ ++ M +G P ++IL+ L G
Sbjct: 85 DLFKNMHKNGNLPDLFAYSILLDGLCKQG 113
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%)
Query: 143 QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFT 202
++ A +LF + +G PD Y +I Y + IDKA + Y M G TP K+T+
Sbjct: 9 EVVEARKLFDVMITKGYKPDVFCYNILINGYCKATRIDKAKQLYNEMILQGLTPDKVTYN 68
Query: 203 ILIRNLENAG 212
LI L G
Sbjct: 69 TLIHGLCQLG 78
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ +I L + ++ A++LF + K G PD Y+ ++ + G + KA
Sbjct: 62 PDKVTYNTLIHGLCQLGRLREAQDLFKNMHKNGNLPDLFAYSILLDGLCKQGYLGKAFRL 121
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+ M++S P + + IL+ + +G
Sbjct: 122 FRAMQSSSLKPDLVMYNILVDAMCKSGN 149
>gi|125555457|gb|EAZ01063.1| hypothetical protein OsI_23091 [Oryza sativa Indica Group]
Length = 552
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
Query: 98 TLTELRRQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKK 156
+T + E+D ALKV+ V V +P++ LYS MI L ++ AE LF E+
Sbjct: 264 VITGFCKSGEIDCALKVWEAMVASPV--RPNVVLYSAMIGGLANFGKMTEAELLFREMID 321
Query: 157 EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
P+ Y MI Y ++G +A+ +E M +GC P+ ++++ILI L N G
Sbjct: 322 SKCAPNIITYGSMIQGYFKIGDTSRALSVWEEMIGAGCMPNAVSYSILINGLCNVG 377
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
LD+AL++ + + PD YS ++ L ++ A L E+ +G+ +
Sbjct: 99 LDVALRILHEIIPGWDLAPDKFTYSTVVSALADAGRVDDAVALVHEMVADGVVA-AEAFN 157
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
++ L+ G + A + +E M+ GC P T+ +L+ L G V R
Sbjct: 158 PVLRAMLRAGDVKGAAKLFEFMQLKGCVPTAATYNVLVHGLLVCGRAGAAMGVMR 212
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEG-LDPDTRVYTEMIGVYLQVGMIDKAME 184
PD Y+ MI L + + LF ++ G DPD Y ++ L + +AM+
Sbjct: 396 PDTIAYTSMIKGLCVSGMVDGGLRLFYDMLASGHADPDVISYNVLLDGLLLAKDLPRAMD 455
Query: 185 TYETMKASGCTPHKLTFTILIRNL---ENAGEEELVAAVRRDC 224
M GC P +T I +R E G E L V R C
Sbjct: 456 LLNRMLDQGCDPDTVTCNIFLREFGAGERKGREFLEGLVVRLC 498
>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
++ L A ++F V + + KPD+++Y+ +I + K + A +LF EL +GL P+
Sbjct: 457 KEGYLGKAFRLFR-VMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNV 515
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
++YT +I + G++D+A+E + M+ GC P + ++ ++IR +E A
Sbjct: 516 QIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGFLQYKDESRAA 570
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D + L+R +DLA VF+ + K + +PD ++ +I L K + A A E F +
Sbjct: 136 LIDCFSHLQR---VDLAFSVFSKMIK-LGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDF 191
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ G P YT +I ++G A ++ M+ +GC P+ +T+ ILI +L
Sbjct: 192 EASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSL 245
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ S +I +++ +A +F ++ K GL PD + +I +VG +A+E
Sbjct: 128 PDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEF 187
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
++ +ASGC P T+T +I L GE A +
Sbjct: 188 FDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGL 222
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD Y+ +I K K+I A++LF E+ +GL PD Y +I Q+G + +A +
Sbjct: 372 KPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQD 431
Query: 185 TYETMKASGCTPHKLTFTILI 205
++ M ++G P T+++L+
Sbjct: 432 LFKNMHSNGNLPDLFTYSMLL 452
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E+ +PD+ YS ++ +I A +LF + +G PD Y +I Y + ID
Sbjct: 333 EMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRID 392
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+A + + M G TP + + LI L G
Sbjct: 393 EAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLG 424
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 44/81 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ ++ ++ + K +++ A+ +F + + G++PD Y+ ++ Y I +A +
Sbjct: 303 PNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKL 362
Query: 186 YETMKASGCTPHKLTFTILIR 206
++ M GC P ++ ILI+
Sbjct: 363 FDAMITKGCKPDAFSYNILIK 383
>gi|225432159|ref|XP_002274904.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic [Vitis vinifera]
Length = 498
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 71/127 (55%), Gaps = 1/127 (0%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
+ + L++L + + AL+VF +R++ +Y+P Y ++++LGK+ Q A ELF +
Sbjct: 111 VAEALSDLVLKKQWLQALEVFEMLREQPFYQPKEGTYMKLLVLLGKSGQPLRAHELFDTM 170
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA-SGCTPHKLTFTILIRNLENAGE 213
+EG +P T +YT ++ Y + +ID+A MK C P T++ L++ +A
Sbjct: 171 VEEGCEPTTELYTALLASYCRSNLIDEAFSILNQMKTLPRCQPDVFTYSTLLKACVDASR 230
Query: 214 EELVAAV 220
ELV ++
Sbjct: 231 FELVESL 237
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 35/149 (23%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L+ + + D KV + + + KPD+ + ++ + G QI + E+ + + + G
Sbjct: 257 LSGYGKAGKFDEMEKVLSGMLESTSSKPDVWTMNTILSLFGNKGQIEIMEKWYEKFRNFG 316
Query: 159 LDPDTRVYTEMIGVYLQVGMIDK---AME------------------------------- 184
++P+TR + +IG Y + M DK ME
Sbjct: 317 IEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFSDVGDAKNME 376
Query: 185 -TYETMKASGCTPHKLTFTILIRNLENAG 212
T++ M+A G TF LIR NAG
Sbjct: 377 YTFDQMRAEGMKADTKTFCCLIRGYANAG 405
>gi|357140426|ref|XP_003571769.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Brachypodium distachyon]
Length = 637
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ +Y+ + LGK KQ++ LF ++K G+ PD Y MI Y +VG++DKA +
Sbjct: 427 DIGMYNMVFSALGKLKQVSFISTLFDKMKASGIAPDLFTYNIMISSYGRVGLVDKASGLF 486
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGE 213
E M+AS C P +T+ LI L G+
Sbjct: 487 EEMEASSCKPDVITYNTLINCLGKNGD 513
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 52/89 (58%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ +I LGKN + A LF E++++G DPD Y+ +I + + +D A
Sbjct: 495 KPDVITYNTLINCLGKNGDLDEAHILFKEMQEKGYDPDVFTYSTLIECFGKSNKVDMACS 554
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
++ M A GC P+ +T+ IL+ LE G+
Sbjct: 555 LFDEMIAEGCIPNIVTYNILLDCLERRGK 583
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 7/146 (4%)
Query: 64 IQAVHAMKLAKSSSKLEEGFQSRICRLLKADLL--DTLTE-LRRQNELDLALKVFNFVRK 120
I + + L +S L E ++ C K D++ +TL L + +LD A +F + +
Sbjct: 470 ISSYGRVGLVDKASGLFEEMEASSC---KPDVITYNTLINCLGKNGDLDEAHILFKEM-Q 525
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E Y PD+ YS +I GK+ ++ MA LF E+ EG P+ Y ++ + G
Sbjct: 526 EKGYDPDVFTYSTLIECFGKSNKVDMACSLFDEMIAEGCIPNIVTYNILLDCLERRGKTA 585
Query: 181 KAMETYETMKASGCTPHKLTFTILIR 206
+A + YETMK G TP +T++IL R
Sbjct: 586 EAHKHYETMKQQGLTPDSITYSILER 611
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 41/74 (55%)
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
++++++ E++ E+ ++G D Y ++ + GM+D+A + +E MK C P
Sbjct: 198 RSREVSKGFEVYEEMHRKGYKLDIFAYNMLLDALAKAGMVDQAYQVFEDMKQKYCVPDAY 257
Query: 200 TFTILIRNLENAGE 213
T+TILIR G+
Sbjct: 258 TYTILIRMSGKTGQ 271
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 1/131 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L + +D A +VF + K+ + PD Y+ +I M GK Q F E+ G
Sbjct: 228 LDALAKAGMVDQAYQVFEDM-KQKYCVPDAYTYTILIRMSGKTGQTYKFLSFFDEMVSRG 286
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
+ Y +I + M+DK + M S C P++ T+++ + L G+ +
Sbjct: 287 CALNLIAYNTVIEALGKNKMVDKVIFVLSKMIESDCQPNQFTYSLTLDILATEGQLHRLN 346
Query: 219 AVRRDCIQYVE 229
V C +Y+
Sbjct: 347 EVLDICDRYLN 357
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R E+ +V+ + ++ YK D+ Y+ ++ L K + A ++F ++K++ PD
Sbjct: 198 RSREVSKGFEVYEEMHRK-GYKLDIFAYNMLLDALAKAGMVDQAYQVFEDMKQKYCVPDA 256
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
YT +I + + G K + ++ M + GC + + + +I L G+ ++V V
Sbjct: 257 YTYTILIRMSGKTGQTYKFLSFFDEMVSRGCALNLIAYNTVIEAL---GKNKMVDKV 310
>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
Length = 1007
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + LAL++FN + ++ P+L YS +I LG+ ++ AE LF EL++ GL P
Sbjct: 610 LCKNGSTSLALEMFNKMIEQGCL-PNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIP 668
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210
D Y +MI Y+ G ++ A M +GC P T+ +LI+ L+N
Sbjct: 669 DEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKN 717
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 10/141 (7%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ +LD A + +++ +P++ Y+ +I L K + AEEL + +EG+ P+
Sbjct: 542 KDEKLDTATSLLEHMKRS-GCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNV 600
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE----EELVAA 219
YT MI + G A+E + M GC P+ LT++ LIR L G+ E L A
Sbjct: 601 VTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAE 660
Query: 220 VRR-----DCIQYVEFPERFL 235
+ R D I YV+ E ++
Sbjct: 661 LERHGLIPDEITYVKMIEAYI 681
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL++ + +R + KPD Y+++I K ++ A LF E+ +GL P+ YT +I
Sbjct: 479 ALRILDLMR-DGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALI 537
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN----AGEEEL 216
Y + +D A E MK SGC P+ T+ +LI L +G EEL
Sbjct: 538 DGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEEL 587
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 51/88 (57%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P+L +Y+ +I L K+ +A AE + ++ + + PDT YT MI + + +D A++
Sbjct: 212 QPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQ 271
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ M GC P+ +T++ LI L ++G
Sbjct: 272 VFNQMAKEGCEPNTVTYSTLINGLCDSG 299
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+++LD AL+VFN + KE +P+ YS +I L + ++ A +L E+ G+ P
Sbjct: 262 RKHDLDSALQVFNQMAKE-GCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTA 320
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
T I +G + A + MK GC P+ T+T LI L +G
Sbjct: 321 HTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSG 369
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
L +A+ +F+ + ++ + P+ Y+ +I +L +N++I A + + + G P+ Y
Sbjct: 371 LKVAIGLFHRMSRDGVF-PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYN 429
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
EMI Y +G KAM M G + + +T+ +I+ ++G
Sbjct: 430 EMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGN 475
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 51/102 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ +I L + + +A LF + ++G+ P+T Y +I + ++ I A
Sbjct: 352 EPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFV 411
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
M +GC+P+ +T+ +I+ G+ + V + +Q
Sbjct: 412 VLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQ 453
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
PD Y+ MIL + + A ++F ++ KEG +P+T Y+ +I G +++A +
Sbjct: 247 SPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFD 306
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
M G P T T I L + G
Sbjct: 307 LIREMILHGILPTAHTCTGPIIALCDMG 334
>gi|357458279|ref|XP_003599420.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488468|gb|AES69671.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 511
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 93/192 (48%), Gaps = 22/192 (11%)
Query: 15 FHFSQMGFHQRPQISLPSGKKIQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAK 74
FH S + + S PS + GL+ KK + SR+L +EA A+K +
Sbjct: 40 FHSSSFRVYSLKRSSKPSYE---------GLQKDPKKDL--SRILRTEA-----AIKGVE 83
Query: 75 SSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDM 134
+ +K + Q +L+A L D + + QN AL +F +R + WY+P Y+ +
Sbjct: 84 NKAKSWKHKQLWPKAVLEA-LDDAIKGCQWQN----ALMIFELLRNQYWYEPRCQTYTKL 138
Query: 135 ILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA-SG 193
++ML K KQ A +L+ + EGL P V T ++ Y Q G+ A T E MK+
Sbjct: 139 LMMLSKCKQPKEASQLYETMLFEGLKPTVDVLTALVSAYGQSGLFRHAFSTIEDMKSVVD 198
Query: 194 CTPHKLTFTILI 205
C P T+++LI
Sbjct: 199 CKPDVYTYSVLI 210
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K + KP+ Y ++ K I + + ++ + DT + +I Y QVG +
Sbjct: 371 KHIGMKPNSVTYCSLVNAYSKAGLIRKIDSILRHVENSDVILDTPFFNCIISAYGQVGDL 430
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
K E + M+A C P + TFT +I+ G E
Sbjct: 431 KKMGELFLAMRARKCEPDRTTFTCMIQAYNTQGITE 466
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ + +I G +I E+ + E + + PD + + MI Y + GM DK
Sbjct: 271 QPDVFTLNSLIGSYGNGGKIDKMEKWYDEFQLMSIKPDIKTFNMMIKSYGKAGMYDKMKS 330
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ M+ P +T+ +I AGE E
Sbjct: 331 VMDFMERRFFAPTIVTYNTVIEVYGKAGEIE 361
>gi|224136033|ref|XP_002327364.1| predicted protein [Populus trichocarpa]
gi|222835734|gb|EEE74169.1| predicted protein [Populus trichocarpa]
Length = 662
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ R ++D A+K+F + ++ YKPD Y+ +I LGKN + A F E+ ++G
Sbjct: 495 ISSFGRAGKVDEAIKIFEEL-EDSDYKPDTCSYNSLINCLGKNGHLDEAHMKFKEMCEKG 553
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
L+PD Y+ +I + + ++ A ++ M A GC P+ +T+ IL+ LE +G
Sbjct: 554 LNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCYPNIVTYNILLDCLERSG 607
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 7/139 (5%)
Query: 76 SSKLEEGFQSRICRLLKADLLDT------LTELRRQNELDLALKVFNFVRKEVWYKPDLS 129
S E+GF + K +LD L L + +E+D A KVF ++++ +PD
Sbjct: 224 SRNTEKGFAVYLEMKKKGHMLDIFAFNMLLDALVKDSEVDHAYKVFEDMKRK-HCEPDEY 282
Query: 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM 189
Y+ MI M GK + + ELF E+ +G P+ Y MI M+DKA+ + M
Sbjct: 283 TYTIMIRMTGKIGKPDESLELFEEMLNKGYSPNVIAYNTMIQALANARMVDKAILLFLKM 342
Query: 190 KASGCTPHKLTFTILIRNL 208
C P + T+++++ L
Sbjct: 343 VEKECRPSEFTYSVILHLL 361
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D +Y+ + LGK KQI+ +L+ ++K++G PDT Y +I + + G +D+A++ +
Sbjct: 452 DTVMYNTVFSALGKLKQISPLHDLYEKMKQDGPLPDTFTYNILISSFGRAGKVDEAIKIF 511
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGE 213
E ++ S P ++ LI L G
Sbjct: 512 EELEDSDYKPDTCSYNSLINCLGKNGH 538
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
PD+ YS +I GK ++ MA LF E+ EG P+ Y ++ + G +A++
Sbjct: 555 NPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCYPNIVTYNILLDCLERSGRTAEAVD 614
Query: 185 TYETMKASGCTPHKLTFTILIR 206
Y +K G P +T+++L R
Sbjct: 615 LYAKLKQQGLIPDSITYSVLAR 636
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 51/85 (60%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ ++ ++ L K+ ++ A ++F ++K++ +PD YT MI + ++G D+++E +
Sbjct: 245 DIFAFNMLLDALVKDSEVDHAYKVFEDMKRKHCEPDEYTYTIMIRMTGKIGKPDESLELF 304
Query: 187 ETMKASGCTPHKLTFTILIRNLENA 211
E M G +P+ + + +I+ L NA
Sbjct: 305 EEMLNKGYSPNVIAYNTMIQALANA 329
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ +I G+ ++ A ++F EL+ PDT Y +I + G +D+A
Sbjct: 486 PDTFTYNILISSFGRAGKVDEAIKIFEELEDSDYKPDTCSYNSLINCLGKNGHLDEAHMK 545
Query: 186 YETMKASGCTPHKLTFTILI 205
++ M G P +T++ LI
Sbjct: 546 FKEMCEKGLNPDVVTYSTLI 565
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%)
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209
++ E+KK+G D + ++ ++ +D A + +E MK C P + T+TI+IR
Sbjct: 233 VYLEMKKKGHMLDIFAFNMLLDALVKDSEVDHAYKVFEDMKRKHCEPDEYTYTIMIRMTG 292
Query: 210 NAGEEE 215
G+ +
Sbjct: 293 KIGKPD 298
>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
Length = 918
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + LAL++FN + ++ P+L YS +I LG+ ++ AE LF EL++ GL P
Sbjct: 610 LCKNGSTSLALEMFNKMIEQGCL-PNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIP 668
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210
D Y +MI Y+ G ++ A M +GC P T+ +LI+ L+N
Sbjct: 669 DEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKN 717
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 10/141 (7%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ +LD A + +++ +P++ Y+ +I L K + AEEL + +EG+ P+
Sbjct: 542 KDEKLDTATSLLEHMKRS-GCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNV 600
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE----EELVAA 219
YT MI + G A+E + M GC P+ LT++ LIR L G+ E L A
Sbjct: 601 VTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAE 660
Query: 220 VRR-----DCIQYVEFPERFL 235
+ R D I YV+ E ++
Sbjct: 661 LERHGLIPDEITYVKMIEAYI 681
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL++ + +R + KPD Y+++I K ++ A LF E+ +GL P+ YT +I
Sbjct: 479 ALRILDLMR-DGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALI 537
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN----AGEEEL 216
Y + +D A E MK SGC P+ T+ +LI L +G EEL
Sbjct: 538 DGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEEL 587
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 51/88 (57%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P+L +Y+ +I L K+ +A AE + ++ + + PDT YT MI + + +D A++
Sbjct: 212 QPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQ 271
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ M GC P+ +T++ LI L ++G
Sbjct: 272 VFNQMAKEGCEPNTVTYSTLINGLCDSG 299
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+++LD AL+VFN + KE +P+ YS +I L + ++ A +L E+ G+ P
Sbjct: 262 RKHDLDSALQVFNQMAKE-GCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTA 320
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
T I +G + A + MK GC P+ T+T LI L +G
Sbjct: 321 HTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSG 369
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
L +A+ +F+ + ++ + P+ Y+ +I +L +N++I A + + + G P+ Y
Sbjct: 371 LKVAIGLFHRMSRDGVF-PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYN 429
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
EMI Y +G KAM M G + + +T+ +I+ ++G
Sbjct: 430 EMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGN 475
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 51/102 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ +I L + + +A LF + ++G+ P+T Y +I + ++ I A
Sbjct: 352 EPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFV 411
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
M +GC+P+ +T+ +I+ G+ + V + +Q
Sbjct: 412 VLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQ 453
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
PD Y+ MIL + + A ++F ++ KEG +P+T Y+ +I G +++A +
Sbjct: 247 SPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFD 306
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
M G P T T I L + G
Sbjct: 307 LIREMILHGILPTAHTCTGPIIALCDMG 334
>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
Length = 918
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + LAL++FN + ++ P+L YS +I LG+ ++ AE LF EL++ GL P
Sbjct: 610 LCKNGSTSLALEMFNKMIEQGCL-PNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIP 668
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210
D Y +MI Y+ G ++ A M +GC P T+ +LI+ L+N
Sbjct: 669 DEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKN 717
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 10/141 (7%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ +LD A + +++ +P++ Y+ +I L K + AEEL + +EG+ P+
Sbjct: 542 KDEKLDTATSLLEHMKRS-GCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNV 600
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE----EELVAA 219
YT MI + G A+E + M GC P+ LT++ LIR L G+ E L A
Sbjct: 601 VTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAE 660
Query: 220 VRR-----DCIQYVEFPERFL 235
+ R D I YV+ E ++
Sbjct: 661 LERHGLIPDEITYVKMIEAYI 681
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL++ + +R + KPD Y+++I K ++ A LF E+ +GL P+ YT +I
Sbjct: 479 ALRILDLMR-DGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALI 537
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN----AGEEEL 216
Y + +D A E MK SGC P+ T+ +LI L +G EEL
Sbjct: 538 DGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEEL 587
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 51/88 (57%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P+L +Y+ +I L K+ +A AE + ++ + + PDT YT MI + + +D A++
Sbjct: 212 QPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQ 271
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ M GC P+ +T++ LI L ++G
Sbjct: 272 VFNQMAKEGCEPNTVTYSTLINGLCDSG 299
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+++LD AL+VFN + KE +P+ YS +I L + ++ A +L E+ G+ P
Sbjct: 262 RKHDLDSALQVFNQMAKE-GCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTA 320
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
T I +G + A + MK GC P+ T+T LI L +G
Sbjct: 321 HTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSG 369
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
L +A+ +F+ + ++ + P+ Y+ +I +L +N++I A + + + G P+ Y
Sbjct: 371 LKVAIGLFHRMSRDGVF-PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYN 429
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
EMI Y +G KAM M G + + +T+ +I+ ++G
Sbjct: 430 EMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGN 475
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 51/102 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ +I L + + +A LF + ++G+ P+T Y +I + ++ I A
Sbjct: 352 EPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFV 411
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
M +GC+P+ +T+ +I+ G+ + V + +Q
Sbjct: 412 VLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQ 453
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
PD Y+ MIL + + A ++F ++ KEG +P+T Y+ +I G +++A +
Sbjct: 247 SPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFD 306
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
M G P T T I L + G
Sbjct: 307 LIREMILHGILPTAHTCTGPIIALCDMG 334
>gi|297736801|emb|CBI26002.3| unnamed protein product [Vitis vinifera]
Length = 469
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 71/127 (55%), Gaps = 1/127 (0%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
+ + L++L + + AL+VF +R++ +Y+P Y ++++LGK+ Q A ELF +
Sbjct: 111 VAEALSDLVLKKQWLQALEVFEMLREQPFYQPKEGTYMKLLVLLGKSGQPLRAHELFDTM 170
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA-SGCTPHKLTFTILIRNLENAGE 213
+EG +P T +YT ++ Y + +ID+A MK C P T++ L++ +A
Sbjct: 171 VEEGCEPTTELYTALLASYCRSNLIDEAFSILNQMKTLPRCQPDVFTYSTLLKACVDASR 230
Query: 214 EELVAAV 220
ELV ++
Sbjct: 231 FELVESL 237
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 35/149 (23%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L+ + + D KV + + + KPD+ + ++ + G QI + E+ + + + G
Sbjct: 257 LSGYGKAGKFDEMEKVLSGMLESTSSKPDVWTMNTILSLFGNKGQIEIMEKWYEKFRNFG 316
Query: 159 LDPDTRVYTEMIGVYLQVGMIDK---AME------------------------------- 184
++P+TR + +IG Y + M DK ME
Sbjct: 317 IEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFSDVGDAKNME 376
Query: 185 -TYETMKASGCTPHKLTFTILIRNLENAG 212
T++ M+A G TF LIR NAG
Sbjct: 377 YTFDQMRAEGMKADTKTFCCLIRGYANAG 405
Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 129 SLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME---- 184
S Y+++I E F +++ EG+ DT+ + +I Y G+ KA +
Sbjct: 357 STYNNVIEAFSDVGDAKNMEYTFDQMRAEGMKADTKTFCCLIRGYANAGLFHKAEDLIEM 416
Query: 185 --TYETMKASGCTPHKLTFTILIRNLENAG 212
+ MK C P T++I++ + G
Sbjct: 417 ERVFNRMKDKHCQPDSTTYSIMVEAYKKEG 446
>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
Length = 698
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 67/128 (52%), Gaps = 8/128 (6%)
Query: 95 LLDTLTELRRQNE-LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
LL+ L ++ R E +DL K+ + PD+ Y+ +I LGK K+ A +LF E
Sbjct: 300 LLNGLCKMGRLEEAIDLLRKIV-----DNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKE 354
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ GL DT YT +I LQ G I +A Y+TM + GC P +T + +I L AG
Sbjct: 355 MASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAG- 413
Query: 214 EELVAAVR 221
+ AAVR
Sbjct: 414 -RIGAAVR 420
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ S MI L K +I A +F ++ GL P+ VY+ +I + +D A+E
Sbjct: 397 PDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEM 456
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAA 219
MK + CTP +T+ ILI L +G+ E A
Sbjct: 457 LAQMKKAFCTPDTITYNILIDGLCKSGDVEAARA 490
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + + A+++F + P+ +YS +I L K +++ A E+ ++KK P
Sbjct: 409 LSKAGRIGAAVRIFKSMEAR-GLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTP 467
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
DT Y +I + G ++ A ++ M +GC P T+ ILI L AG + V
Sbjct: 468 DTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVL 527
Query: 222 RD 223
D
Sbjct: 528 DD 529
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ Y+ ++ L KNK+I A L ++ G P Y ++ ++G +++A++
Sbjct: 258 DIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLL 317
Query: 187 ETMKASGCTPHKLTFTILIRNL 208
+ +GCTP +T+T LI L
Sbjct: 318 RKIVDNGCTPDVVTYTSLIDGL 339
>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
Length = 1627
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
N+ AL +F +R + + +PD+ Y+++I LGK +I A FCE+++EG PDT
Sbjct: 1269 NDAHGALSLFEEMRHQ-YCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVF 1327
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
MI + G +D AM+ ++ M+ C P +T+ +I+ L
Sbjct: 1328 MNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKAL 1370
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 15/157 (9%)
Query: 80 EEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
E+GF C L+D L + +R DLA ++F + KE +Y+ MI LG
Sbjct: 1424 EKGFPP--CPAAYCSLIDALGKAKR---YDLACELFQEL-KENCGSSSARVYAVMIKHLG 1477
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
K ++ A +F E+ K G PD Y ++ + GM+D+A+ T M+ GC P
Sbjct: 1478 KAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDIN 1537
Query: 200 TFTILIRNLENAGEEELV---------AAVRRDCIQY 227
++ I++ L G + VR D + Y
Sbjct: 1538 SYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSY 1574
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 72/152 (47%)
Query: 61 SEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRK 120
S+ ++ + K+ + + + ++R C+ + + L + + + +++N +
Sbjct: 1153 SDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMST 1212
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E PD YS +I K + A +L E+K+ G+ P T++YT +I ++ +
Sbjct: 1213 EGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAH 1272
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAG 212
A+ +E M+ C P T+T LIR L AG
Sbjct: 1273 GALSLFEEMRHQYCRPDVFTYTELIRGLGKAG 1304
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+ +L R+ D A+++ N + KE+ +P +Y+ +I + K A LF E+
Sbjct: 1226 LISAFCKLGRR---DSAIQLLNEM-KEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEM 1281
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ + PD YTE+I + G ID+A + M+ GC P + +I L AG
Sbjct: 1282 RHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAG 1339
>gi|242086476|ref|XP_002443663.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
gi|241944356|gb|EES17501.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
Length = 853
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 5/120 (4%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
LD+A+ ++ + +EV PD YS M+ LGK Q+A A +LFCE+ + G P+ Y
Sbjct: 446 LDIAMDLYGRM-QEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYN 504
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV----RRD 223
MI + + + ++ Y+ M+ +G P K+T++I++ L + G + AV RRD
Sbjct: 505 IMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRRD 564
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 10/133 (7%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R N L A+KVF + +E Y+PD Y +I + K + +A +L+ +++ GL PDT
Sbjct: 407 RANYLKEAVKVFEEM-QEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDT 465
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI------RNLENA---GEE 214
Y+ M+ + G + A + + M +GCTP+ +T+ I+I RN EN ++
Sbjct: 466 FTYSAMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVVKLYKD 525
Query: 215 ELVAAVRRDCIQY 227
VA R D I Y
Sbjct: 526 MQVAGFRPDKITY 538
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 93/234 (39%), Gaps = 40/234 (17%)
Query: 26 PQISLPSGKKIQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQS 85
P + SG KIQ T T + RS Q H ++ K E +
Sbjct: 261 PNVFSGSGNKIQGSTGTIKAHSGAPQSSLRSLKSLRSVEQYYHTLQQMKWGPMTEHVLDN 320
Query: 86 RICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIA 145
C++ D L+ ++ +AL F +++++ +K D Y+ MI +LG+ +Q
Sbjct: 321 LHCKI---DAFQANQVLKLLHDHTVALGFFQWLKRQPGFKHDGHTYTTMIGILGQARQFG 377
Query: 146 M-----------------------------------AEELFCELKKEGLDPDTRVYTEMI 170
+ A ++F E+++ G +PD Y +I
Sbjct: 378 VLKKLLDEMSRAHCKPTVVTYNRIIHAYGRANYLKEAVKVFEEMQEAGYEPDRVTYCTLI 437
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDC 224
++ + G +D AM+ Y M+ G +P T++ ++ L G +L AA + C
Sbjct: 438 DIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGG--QLAAAYKLFC 489
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
LD A VF +R++ + PD +Y ++ + GK + A + + ++GL P+
Sbjct: 549 GHLDEAEAVFIEMRRD--WAPDEPVYGLLVDLWGKAGNVDKALGWYQAMLQDGLQPNVPT 606
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
++ +L++ A + M A G P T+T+L+
Sbjct: 607 CNSLLSAFLKMNRFQDAYIVLQNMLAQGLVPSVQTYTLLL 646
>gi|297797201|ref|XP_002866485.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312320|gb|EFH42744.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 983
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 96 LDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELK 155
L + EL + N+ D A V + V +E+ +P +++YS +I LGK ++ AEE F ++
Sbjct: 552 LIVVNELCKNNDRDAAFSVID-VMEELGLRPTVAIYSSIIGSLGKQGRVVEAEETFAKML 610
Query: 156 KEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ G+ PD Y MI Y + G ID+A E E + P T+T+LI G E
Sbjct: 611 ESGIQPDEIAYMIMINAYARNGRIDEANELVEEVVKHFVRPSSFTYTVLISGFVKMGMME 670
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 87/200 (43%), Gaps = 6/200 (3%)
Query: 35 KIQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKAD 94
K+++L +DAN + + V ++ Q + L++ + G C L
Sbjct: 461 KVESLLEEIARKDANLAAVGLAVVTTALCSQRNYIAALSRIEKMVNLG-----CTPLPFS 515
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
+ L ++N ++ + N + +E+ + PD+ Y ++ L KN A + +
Sbjct: 516 YNSVIKCLFQENIIEDLGSLVNLI-QELDFVPDVDTYLIVVNELCKNNDRDAAFSVIDVM 574
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
++ GL P +Y+ +IG + G + +A ET+ M SG P ++ + I+I G
Sbjct: 575 EELGLRPTVAIYSSIIGSLGKQGRVVEAEETFAKMLESGIQPDEIAYMIMINAYARNGRI 634
Query: 215 ELVAAVRRDCIQYVEFPERF 234
+ + + +++ P F
Sbjct: 635 DEANELVEEVVKHFVRPSSF 654
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 36/60 (60%)
Query: 156 KEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
K+ + P+ ++ ++ Y G +D+A E+M+ G P+++T+TIL+++ AG+ E
Sbjct: 788 KKSIIPNLYLHNTIVTGYCAAGRLDEAYNHLESMQKEGIVPNQVTYTILMKSHIEAGDIE 847
Score = 36.6 bits (83), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 65/131 (49%), Gaps = 6/131 (4%)
Query: 79 LEEGFQSRICRLLKAD-LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILM 137
+E G + + RLL+ ++ + L A++V V+K + P+L L++ ++
Sbjct: 747 VEPGKEKLLQRLLQTKPIVSISSSLCNYGSKSFAMEVIGKVKKSII--PNLYLHNTIVTG 804
Query: 138 LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH 197
++ A ++KEG+ P+ YT ++ +++ G I+ A++ +E K C P
Sbjct: 805 YCAAGRLDEAYNHLESMQKEGIVPNQVTYTILMKSHIEAGDIESAIDLFEETK---CEPD 861
Query: 198 KLTFTILIRNL 208
++ + L++ L
Sbjct: 862 QVMCSTLLKGL 872
>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 827
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 17/178 (9%)
Query: 46 RDANKKPMWRSRVLSSEAIQAVHAM--------KLAKSSSKLEEGFQ-------SRICRL 90
RD N+ W S LS+ Q + ++ +L K S+L E + S
Sbjct: 83 RDPNRGKPWASHRLSTLGQQVLDSLIDPCFEGSELDKVLSQLFEYYHKEELSLSSGTWNS 142
Query: 91 LKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDL--SLYSDMILMLGKNKQIAMAE 148
L D+L + L + D+A+ VF++VR+ ++ L S+ + +I MLGK +++ A
Sbjct: 143 LSMDVLGIIKGLGFYKKCDMAMSVFSWVREREDFESVLNCSVVAVIITMLGKEGKVSAAS 202
Query: 149 ELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
+ L+K+G D D YT +I Y G A+ ++ M+ GC P +T+ +++
Sbjct: 203 SILNNLRKDGFDLDVYAYTSLITAYASNGRYRDAVLVFKKMEEEGCKPTLITYNVILN 260
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 14/158 (8%)
Query: 55 RSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKV 114
R L EA Q MKL+ GF ++ LLD + RR E LK
Sbjct: 299 RRGSLYEEAAQVFEEMKLS--------GFSPD--KVTFNTLLDVYGKSRRPKEAMEVLKE 348
Query: 115 FNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYL 174
F + P + Y+ +I ++ + A EL ++ ++G+ PD YT ++ +
Sbjct: 349 MEFSG----FSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFE 404
Query: 175 QVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ GM + AM + M+A+GC P+ TF LI+ N G
Sbjct: 405 KAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRG 442
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 103 RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
RR + + A +VF + K + PD ++ ++ + GK+++ A E+ E++ G P
Sbjct: 299 RRGSLYEEAAQVFEEM-KLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPS 357
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
Y +I Y + G++ +AME + M G P T+T L+ E AG +E
Sbjct: 358 IVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDE 410
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A ++ NF+ E + P L+ Y+ ++ M +++ +EE+ E+ +GL PD Y +I
Sbjct: 656 ANEILNFM-NESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAKGLKPDLISYNTVI 714
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y + G + A + MK G P +T+ +
Sbjct: 715 FAYCRNGRMKDASRIFSYMKTYGLVPDVITYNTFV 749
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 43/87 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ ++ ++ + G+N + +F E+K+ G P+ + +I Y + G +AM
Sbjct: 461 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAV 520
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
Y+ M +G TP ++ ++ L G
Sbjct: 521 YKRMLEAGVTPDLSSYNAVLAALARGG 547
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A+++F +R KP++ ++ +I M G + A ++F E++ PD + ++
Sbjct: 412 AMRIFGEMRA-AGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLL 470
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
V+ Q GM + ++ MK +G P + TF LI G + AV +
Sbjct: 471 AVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYK 522
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPDL Y+ +I +N ++ A +F +K GL PD Y + Y + + A+
Sbjct: 704 KPDLISYNTVIFAYCRNGRMKDASRIFSYMKTYGLVPDVITYNTFVASYAADSLFEDAIG 763
Query: 185 TYETMKASGCTPHKLTFTILI 205
M GC ++ T+ ++
Sbjct: 764 VVRYMIKHGCKRNQNTYNSIV 784
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 125 KPDLSLYSDMILMLGK-NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
KP L Y+ ++ + GK + L +K G+ PD Y +I + + ++A
Sbjct: 249 KPTLITYNVILNVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYNTLISCCRRGSLYEEAA 308
Query: 184 ETYETMKASGCTPHKLTFTILI 205
+ +E MK SG +P K+TF L+
Sbjct: 309 QVFEEMKLSGFSPDKVTFNTLL 330
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 49/109 (44%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ ++ K A +F E++ G P+ + +I ++ G + M+
Sbjct: 390 KPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMK 449
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPER 233
+E ++ C P +T+ L+ G + V+ V ++ + PER
Sbjct: 450 VFEEIEICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPER 498
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ +I + A ++F E+K G PD + ++ VY + +AME
Sbjct: 286 PDDYTYNTLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEV 345
Query: 186 YETMKASGCTPHKLTFTILI 205
+ M+ SG +P +T+ LI
Sbjct: 346 LKEMEFSGFSPSIVTYNSLI 365
>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
Length = 597
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+Q L A ++F + + KP+L +Y+ ++ + K+ A +LF EL +GL P
Sbjct: 455 KQGYLGKAFRLFR-AMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHV 513
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
++YT +I + G++D+A+E + M+A GC P ++++ ++IR L
Sbjct: 514 QLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGL 558
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
++ +L+R +DL V V K + +P + ++ +I L K + A A ELF ++
Sbjct: 134 FMNCFCQLQR---VDLGFSVLAKVIK-LGLQPTIVTFTTLINGLCKVGEFAQAVELFDDM 189
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+G PD Y +I ++G A + M+ +GC P+ +T++ LI +L
Sbjct: 190 VAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSL 243
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ Y+ +I K K+I A +LF E+ +GL P+ Y +I + Q+G + +A +
Sbjct: 370 KPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQD 429
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ M +G P T++IL+ G
Sbjct: 430 LFRNMCTNGNLPDLFTYSILLDGFCKQG 457
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 47/84 (55%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ Y+ +I L K + A A L ++++ G P+ Y+ +I + ++++A++
Sbjct: 195 QPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALD 254
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
+ MKA G +P T+T LI+ L
Sbjct: 255 IFSYMKAKGISPDIFTYTSLIQGL 278
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
+ L+D+L R NE AL +F++++ + PD+ Y+ +I L K + A L
Sbjct: 237 STLIDSLCRDRLVNE---ALDIFSYMKAK-GISPDIFTYTSLIQGLCKFSRWKEASALLN 292
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
E+ + PD + ++ + + G + +A+ +TM G P+ +T++ L+
Sbjct: 293 EMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLM 345
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 4/140 (2%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+DT + + +E LK E+ +P++ YS ++ + A +LF +
Sbjct: 309 LVDTFCKEGKVSEALGVLKTMT----EMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVM 364
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
+G P+ Y +I Y + ID+AM+ + M G TP+ +++ LI G+
Sbjct: 365 ITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKL 424
Query: 215 ELVAAVRRDCIQYVEFPERF 234
+ R+ P+ F
Sbjct: 425 REAQDLFRNMCTNGNLPDLF 444
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%)
Query: 122 VWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDK 181
V P++ S + + +++ + + ++ K GL P +T +I +VG +
Sbjct: 122 VGLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQ 181
Query: 182 AMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
A+E ++ M A GC P T+ +I L GE A + +
Sbjct: 182 AVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLK 222
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 44/94 (46%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E +P++ YS +I L +++ + A ++F +K +G+ PD YT +I +
Sbjct: 225 EEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRW 284
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+A M + P +TF +L+ G+
Sbjct: 285 KEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGK 318
>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
Length = 694
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R ELD A +V + +R+E KP+L ++ M+ L K ++ A ++F E+ +EGL PD
Sbjct: 199 RAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDV 258
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE-EELVAAV 220
Y ++ Y +VG + +++ + M G P +TFT LI AG E+ VA V
Sbjct: 259 VSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALV 316
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD YS +I L + K++ A ELF + + G+ PD YT +I + + G ++KA+
Sbjct: 431 PDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSL 490
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
++ M G P +T+++LI L +
Sbjct: 491 HDEMIRKGVLPDVVTYSVLINGLSKS 516
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
LD AL +RK +P + Y+ +I K ++ +A EL E++ + + PD Y+
Sbjct: 344 LDDALLAVEEMRK-CGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYS 402
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+I Y +VG +D A + + M G P +T++ LIR L
Sbjct: 403 TIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGL 443
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y P + Y+ ++L L + + A + + G+ P+ Y ++ G +++A+
Sbjct: 114 YAPSVPAYNAVLLAL-SDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAV 172
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGE 213
M+ +GC P+ +T+ L+ AGE
Sbjct: 173 GVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 202
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ YS +I K + A +L ++ K+G+ PD Y+ +I + ++ A E
Sbjct: 395 KPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACE 454
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
+E M G P + T+T LI G E ++ + I+ P+
Sbjct: 455 LFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPD 502
>gi|224069810|ref|XP_002303045.1| predicted protein [Populus trichocarpa]
gi|222844771|gb|EEE82318.1| predicted protein [Populus trichocarpa]
Length = 388
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 114 VFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY 173
VF +R+++WY+P +Y +I+MLGK KQ A +LF + EG YT ++ Y
Sbjct: 16 VFELLREQLWYRPYAGMYVKLIVMLGKCKQPDKAHQLFQAMIDEGCAVTHESYTALLSAY 75
Query: 174 LQVGMIDKAMETYETMKAS-GCTPHKLTFTILIRN 207
+ G+ DKA E MK + C P T++ILI++
Sbjct: 76 GRSGLFDKAFSIMEEMKNTPDCRPDVHTYSILIKS 110
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 112 LKVFNFVRKEVW--------YKPDLSLYSDMILMLGKNKQIAMAEELFCE-LKKEGLDPD 162
L+VF F + +V +P+ Y+ +I GK K A E E L ++ +PD
Sbjct: 112 LQVFAFDKVQVLLSDMESLGIRPNTVTYNTVIDAYGKAKMFAEMEATLMEMLSQQDCEPD 171
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
I + G ++ YE +++G P+ TF IL+ + AG + ++AV
Sbjct: 172 VWTMNSTIRAFGGSGQMEMMENCYEKFQSAGIEPNIKTFNILLDSYGKAGNYQKMSAV 229
>gi|414869157|tpg|DAA47714.1| TPA: hypothetical protein ZEAMMB73_516901 [Zea mays]
Length = 853
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 5/120 (4%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
LD+A+ ++ + +EV PD YS M+ LGK Q+A A +LFCE+ + G P+ Y
Sbjct: 446 LDIAMDLYGRM-QEVGLSPDTFTYSVMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYN 504
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV----RRD 223
MI + + + ++ Y+ M+ +G P K+T++I++ L + G + AV RRD
Sbjct: 505 IMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRRD 564
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 94/234 (40%), Gaps = 40/234 (17%)
Query: 26 PQISLPSGKKIQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQS 85
P + SG KIQ T + RS L Q H ++ K E +
Sbjct: 261 PNVFSGSGNKIQGSTGRVKAHSGGPQSNLRSLKLLRSVEQYYHTLQQMKWGPMTEHVLDN 320
Query: 86 RICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIA 145
C++ D L+ ++ +AL F +++++ +K D Y+ MI +LG+ +Q
Sbjct: 321 LHCKI---DAFQANQVLKLLHDHTVALGFFQWLKRQPGFKHDGHTYTTMIGILGQARQFG 377
Query: 146 MAEEL-----------------------------------FCELKKEGLDPDTRVYTEMI 170
+ +EL F E+++ G +PD Y +I
Sbjct: 378 VLKELLDEMSRAHCKPTVVTYNRIIHAYGRANYLKEAVKVFEEMQEAGYEPDRVTYCTLI 437
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDC 224
++ + G +D AM+ Y M+ G +P T+++++ L G +L AA + C
Sbjct: 438 DIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSVMVNCLGKGG--QLAAAYKLFC 489
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 10/133 (7%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R N L A+KVF + +E Y+PD Y +I + K + +A +L+ +++ GL PDT
Sbjct: 407 RANYLKEAVKVFEEM-QEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDT 465
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI------RNLENA---GEE 214
Y+ M+ + G + A + + M +GCTP+ +T+ I+I RN EN ++
Sbjct: 466 FTYSVMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVVKLYKD 525
Query: 215 ELVAAVRRDCIQY 227
VA R D I Y
Sbjct: 526 MQVAGFRPDKITY 538
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
LD A VF +R++ + PD +Y ++ + GK + A + + ++GL P+
Sbjct: 550 HLDEAEAVFIEMRRD--WAPDEPVYGLLVDLWGKAGNVDKALGWYQAMLQDGLQPNVPTC 607
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
++ +L++ A + M A G P T+T+L+
Sbjct: 608 NSLLSAFLKMNRFQDAYIVLQNMLARGLVPSVQTYTLLL 646
>gi|326513138|dbj|BAK06809.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 637
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ +Y+ + LGK KQ++ LF ++K G+ PD Y MI Y +VG++DKA +
Sbjct: 427 DVGMYNMVFSALGKLKQVSFITSLFDKMKANGIAPDLFTYNIMISSYGRVGLVDKASGLF 486
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGE 213
E M AS C P +T+ LI L G+
Sbjct: 487 EDMNASSCKPDVITYNSLINCLGKNGD 513
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 50/89 (56%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ +I LGKN + A LF E++++G PD Y+ +I + + +D A
Sbjct: 495 KPDVITYNSLINCLGKNGDLDEAHMLFKEMQEKGYGPDVFTYSILIECFGKSNKVDMACN 554
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
+ M A GC P+ +T+ IL+ LE G+
Sbjct: 555 LFLDMIAEGCIPNVVTYNILLDCLERHGK 583
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 1/143 (0%)
Query: 64 IQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVW 123
I + + L +S L E + C+ + L + +LD A +F + +E
Sbjct: 470 ISSYGRVGLVDKASGLFEDMNASSCKPDVITYNSLINCLGKNGDLDEAHMLFKEM-QEKG 528
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y PD+ YS +I GK+ ++ MA LF ++ EG P+ Y ++ + G +A
Sbjct: 529 YGPDVFTYSILIECFGKSNKVDMACNLFLDMIAEGCIPNVVTYNILLDCLERHGKTAEAH 588
Query: 184 ETYETMKASGCTPHKLTFTILIR 206
+ YETMK G TP +T +IL R
Sbjct: 589 KHYETMKQQGLTPDSITCSILER 611
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%)
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
++++++ E++ E++++G D Y ++ + GM+D+A + +E MK C P
Sbjct: 198 RSREVSKGFEVYEEMRRKGYMLDIFGYNMLLDALAKSGMVDQAYQVFEDMKQKYCEPDAY 257
Query: 200 TFTILIRNLENAGE 213
T+TILIR AG+
Sbjct: 258 TYTILIRMSGRAGK 271
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 4/124 (3%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL Y+ MI G+ + A LF ++ PD Y +I + G +D+A
Sbjct: 461 PDLFTYNIMISSYGRVGLVDKASGLFEDMNASSCKPDVITYNSLINCLGKNGDLDEAHML 520
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE----RFLEEVYQK 241
++ M+ G P T++ILI + + ++ + D I P L + ++
Sbjct: 521 FKEMQEKGYGPDVFTYSILIECFGKSNKVDMACNLFLDMIAEGCIPNVVTYNILLDCLER 580
Query: 242 HRKT 245
H KT
Sbjct: 581 HGKT 584
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L + +D A +VF ++++ + +PD Y+ +I M G+ + + F E+ +G
Sbjct: 228 LDALAKSGMVDQAYQVFEDMKQK-YCEPDAYTYTILIRMSGRAGKASKFLSFFDEMVSKG 286
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
+ Y +I + M+DK + M GC P++ T++I + L G+ +
Sbjct: 287 CALNLIAYNTLIEALGKNKMVDKVIFVLSKMIEGGCQPNQFTYSITLDILAKEGQLHRLN 346
Query: 219 AVRRDCIQYVE 229
V C +Y+
Sbjct: 347 EVLDICDRYMN 357
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 60/117 (51%), Gaps = 4/117 (3%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R E+ +V+ +R++ Y D+ Y+ ++ L K+ + A ++F ++K++ +PD
Sbjct: 198 RSREVSKGFEVYEEMRRK-GYMLDIFGYNMLLDALAKSGMVDQAYQVFEDMKQKYCEPDA 256
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
YT +I + + G K + ++ M + GC + + + LI L G+ ++V V
Sbjct: 257 YTYTILIRMSGRAGKASKFLSFFDEMVSKGCALNLIAYNTLIEAL---GKNKMVDKV 310
>gi|224074009|ref|XP_002304213.1| predicted protein [Populus trichocarpa]
gi|222841645|gb|EEE79192.1| predicted protein [Populus trichocarpa]
Length = 190
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Query: 41 VTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLT 100
+ CG R + + P+ R R+LS+EAI A+ ++K A ++ + R++++DLL +
Sbjct: 5 IRCGPR-SKRGPLVRGRILSTEAILAIQSLKRADNNKSESSKKLPNLARMIRSDLLSIIR 63
Query: 101 ELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNK 142
EL RQ+ LAL+V + +R E + DL+LY+D+I L +NK
Sbjct: 64 ELLRQDLCSLALQVLSTLRSEYPGQIDLNLYADVIFALSRNK 105
>gi|224079734|ref|XP_002305931.1| predicted protein [Populus trichocarpa]
gi|222848895|gb|EEE86442.1| predicted protein [Populus trichocarpa]
Length = 120
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 52/84 (61%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPDL +Y+ ++ + K+ + A ELF EL +GL P+ ++YT +I + G++D+A+E
Sbjct: 7 KPDLVMYNILVDAMCKSGNLKDARELFSELFVKGLQPNVQIYTTIINGLCKEGLLDEALE 66
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
+ M+ GC P + ++ ++IR
Sbjct: 67 AFRNMEEDGCPPDEFSYNVIIRGF 90
>gi|297724885|ref|NP_001174806.1| Os06g0499301 [Oryza sativa Japonica Group]
gi|52076487|dbj|BAD45366.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|125597333|gb|EAZ37113.1| hypothetical protein OsJ_21452 [Oryza sativa Japonica Group]
gi|255677074|dbj|BAH93534.1| Os06g0499301 [Oryza sativa Japonica Group]
Length = 642
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
Query: 98 TLTELRRQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKK 156
+T + E+D ALKV+ V V +P++ LYS MI L ++ AE LF E+
Sbjct: 354 VITGFCKSGEIDCALKVWEAMVASPV--RPNVVLYSAMIGGLANFGKMTEAELLFREMIH 411
Query: 157 EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
P+ Y +I Y ++G +A+ +E M +GC P+ ++++ILI L N G
Sbjct: 412 SKCAPNIITYGSIIQGYFKIGDTSRALSVWEEMIGAGCVPNAVSYSILINGLCNVG 467
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEG-LDPDTRVYTEMIGVYLQVGMIDKAME 184
PD Y+ MI L + + LF ++ G DPD Y ++ L + +AM+
Sbjct: 486 PDTIAYTSMIKGLCVSGMVDGGLRLFYDMLASGHADPDVISYNVLLDGLLLAKDLPRAMD 545
Query: 185 TYETMKASGCTPHKLTFTILIRNL---ENAGEEELVAAVRRDC 224
M GC P +T I +R E G E L V R C
Sbjct: 546 LLNRMLDQGCDPDTVTCNIFLREFGAGERKGREFLEGLVVRLC 588
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
LD+AL++ + + PD YS ++ L ++ A L E+ +G+ +
Sbjct: 189 LDVALRILHEIIPGWDLAPDKFTYSTVVSALADAGRVDDAVALVHEMVADGVV-AAEAFN 247
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
++ L+ G + A + + M+ GC P T+ +L+ L G V R
Sbjct: 248 PVLRAMLRAGDVKGAAKLFGFMQLKGCVPTTATYNVLVHGLLVCGRAGAAMGVMR 302
>gi|302806226|ref|XP_002984863.1| hypothetical protein SELMODRAFT_121207 [Selaginella moellendorffii]
gi|300147449|gb|EFJ14113.1| hypothetical protein SELMODRAFT_121207 [Selaginella moellendorffii]
Length = 564
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 70/138 (50%), Gaps = 2/138 (1%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L++Q E +A F + RK+ +K D+ Y+ ++ +LG+ K + L E+ +EG +P
Sbjct: 41 LKQQKEAGVAYNFFIWARKQAGFKHDVHTYTTILGILGRAKSFDVLNNLLDEMIREGCEP 100
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
+ Y +I Y + +D +++ + M+ GC P ++T+ LI AG + +
Sbjct: 101 NVVTYNRLIHCYGRANDLDSSLKLFNVMQMVGCEPDRVTYCTLIDLQAKAGFHDAAMDLY 160
Query: 222 RDCIQYVEF-PERFLEEV 238
R +Q+ F P+ F +
Sbjct: 161 RQ-MQHAGFRPDTFTYSI 177
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++PD YS +I LGK ++ A +LFCE+ G P Y +I ++ + G D A+
Sbjct: 168 FRPDTFTYSIIIHCLGKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKFDMAL 227
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ Y ++ G P ++T+ I++ L N G E
Sbjct: 228 KLYSDLQEVGYAPDRVTYGIIMEVLGNCGHIE 259
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 1/130 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R N+LD +LK+FN V + V +PD Y +I + K A +L+ +++ G PDT
Sbjct: 114 RANDLDSSLKLFN-VMQMVGCEPDRVTYCTLIDLQAKAGFHDAAMDLYRQMQHAGFRPDT 172
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
Y+ +I + G ++ A + + M G P +T+ I+I AG+ ++ + D
Sbjct: 173 FTYSIIIHCLGKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYSD 232
Query: 224 CIQYVEFPER 233
+ P+R
Sbjct: 233 LQEVGYAPDR 242
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ + D+ALK+++ + +EV Y PD Y ++ +LG I AE++F E+++ G D
Sbjct: 219 KAGKFDMALKLYSDL-QEVGYAPDRVTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADN 277
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH 197
++ M+ ++ + G +KA + + M SG P+
Sbjct: 278 PIFGLMVDMWGKTGNAEKAAQWFNRMLDSGLQPN 311
Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + +L+ A K+F + Y P L Y+ +I + K + MA +L+ +L++ G P
Sbjct: 182 LGKAGKLNAAYKLFCEMTDRG-YAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVGYAP 240
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
D Y ++ V G I+ A + +E M+ +G F +++ G E A
Sbjct: 241 DRVTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGLMVDMWGKTGNAEKAA 297
>gi|302808451|ref|XP_002985920.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
gi|300146427|gb|EFJ13097.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
Length = 574
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 70/138 (50%), Gaps = 2/138 (1%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L++Q E +A F + RK+ +K D+ Y+ ++ +LG+ K + L E+ +EG +P
Sbjct: 41 LKQQKEAGVAYNFFIWARKQAGFKHDVHTYTTILGILGRAKSFDVLNNLLDEMIREGCEP 100
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
+ Y +I Y + +D +++ + M+ GC P ++T+ LI AG + +
Sbjct: 101 NVVTYNRLIHCYGRANDLDSSLKLFNVMQMVGCEPDRVTYCTLIDLQAKAGFHDAAMELY 160
Query: 222 RDCIQYVEF-PERFLEEV 238
R +Q+ F P+ F +
Sbjct: 161 RQ-MQHAGFRPDTFTYSI 177
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 13/124 (10%)
Query: 92 KADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELF 151
KA D EL RQ + ++PD YS +I LGK ++ A +LF
Sbjct: 149 KAGFHDAAMELYRQ-------------MQHAGFRPDTFTYSIIIHCLGKAGKLNAAYKLF 195
Query: 152 CELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
CE+ G P Y +I ++ + G D A++ Y ++ G P ++T+ I++ L N
Sbjct: 196 CEMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVGYAPDRVTYGIIMEVLGNC 255
Query: 212 GEEE 215
G E
Sbjct: 256 GHIE 259
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 1/130 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R N+LD +LK+FN V + V +PD Y +I + K A EL+ +++ G PDT
Sbjct: 114 RANDLDSSLKLFN-VMQMVGCEPDRVTYCTLIDLQAKAGFHDAAMELYRQMQHAGFRPDT 172
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
Y+ +I + G ++ A + + M G P +T+ I+I AG+ ++ + D
Sbjct: 173 FTYSIIIHCLGKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYSD 232
Query: 224 CIQYVEFPER 233
+ P+R
Sbjct: 233 LQEVGYAPDR 242
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ + D+ALK+++ + +EV Y PD Y ++ +LG I AE++F E+++ G D
Sbjct: 219 KAGKFDMALKLYSDL-QEVGYAPDRVTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADN 277
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH 197
++ M+ ++ + G +KA + + M SG P+
Sbjct: 278 PIFGLMVDMWGKTGNAEKAAQWFNRMLDSGLQPN 311
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + +L+ A K+F + Y P L Y+ +I + K + MA +L+ +L++ G P
Sbjct: 182 LGKAGKLNAAYKLFCEMTDRG-YAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVGYAP 240
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
D Y ++ V G I+ A + +E M+ +G F +++ G E A
Sbjct: 241 DRVTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGLMVDMWGKTGNAEKAA 297
>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
Length = 717
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R ELD A +V + +R+E KP+L ++ M+ L K ++ A ++F E+ +EGL PD
Sbjct: 199 RAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDV 258
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE-EELVAAV 220
Y ++ Y +VG + +++ + M G P +TFT LI AG E+ VA V
Sbjct: 259 VSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALV 316
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD YS +I L + K++ A ELF + + G+ PD YT +I + + G ++KA+
Sbjct: 431 PDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSL 490
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
++ M G P +T+++LI L +
Sbjct: 491 HDEMIRKGVLPDVVTYSVLINGLSKS 516
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
++ LD AL +RK +P + Y+ +I K ++ +A EL E++ + + PD
Sbjct: 340 KKGFLDDALLAVEEMRK-CGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDV 398
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
Y+ +I Y +VG +D A + + M G P +T++ LIR L
Sbjct: 399 VTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGL 443
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y P + Y+ ++L L + + A + + G+ P+ Y ++ G +++A+
Sbjct: 114 YAPSVPAYNAVLLAL-SDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAV 172
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRRD 223
M+ +GC P+ +T+ L+ AGE E +V+ +R +
Sbjct: 173 GVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREE 216
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ YS +I K + A +L ++ K+G+ PD Y+ +I + ++ A E
Sbjct: 395 KPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACE 454
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
+E M G P + T+T LI G E ++ + I+ P+
Sbjct: 455 LFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPD 502
>gi|224109914|ref|XP_002333182.1| predicted protein [Populus trichocarpa]
gi|222835036|gb|EEE73485.1| predicted protein [Populus trichocarpa]
Length = 319
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L +Q LD AL++F ++ + PDL +Y+ +I + K+ ++ A ELF +L +G
Sbjct: 152 LHGLSKQGYLDQALELFREMQNN-YLNPDLVIYNILIDAMCKSGKLEDARELFLKLHVKG 210
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN-LENAG 212
L PD R +T +I + G++D+A + + M+ GC P ++ +++R L+N G
Sbjct: 211 LLPDVRSWTSIISGLCREGLLDEAYKAFRQMERDGCPPDCCSYNVIVRGFLQNNG 265
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 10/110 (9%)
Query: 105 QNELDLALKVFN--FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
QN + A KVFN R + PD+ Y+ +I K ++I A+++F E+ GL P+
Sbjct: 58 QNRVFEARKVFNAMITRGCI---PDVLSYNILINGCCKAQRIDEAKQIFDEMSFRGLIPN 114
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
T Y ++G G + ++ ++ M A GC+P +T++I + L G
Sbjct: 115 TATYNTLLG-----GFWKQKIQLFKDMHAQGCSPDLVTYSIFLHGLSKQG 159
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 44/81 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD ++ ++ L K +I+ A+ + + ++G++P+T Y+ ++ YL + +A +
Sbjct: 8 PDAVTFNILVDTLCKKGKISEAQGIVKTMIEKGVEPNTVTYSSLMNGYLLQNRVFEARKV 67
Query: 186 YETMKASGCTPHKLTFTILIR 206
+ M GC P L++ ILI
Sbjct: 68 FNAMITRGCIPDVLSYNILIN 88
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 9/121 (7%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL YS + L K + A ELF E++ L+PD +Y +I + G ++ A E
Sbjct: 143 PDLVTYSIFLHGLSKQGYLDQALELFREMQNNYLNPDLVIYNILIDAMCKSGKLEDAREL 202
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG-EEELVAAVRR--------DCIQYVEFPERFLE 236
+ + G P ++T +I L G +E A R+ DC Y FL+
Sbjct: 203 FLKLHVKGLLPDVRSWTSIISGLCREGLLDEAYKAFRQMERDGCPPDCCSYNVIVRGFLQ 262
Query: 237 E 237
Sbjct: 263 N 263
>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 966
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Query: 113 KVFNFVRKEV--WYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
K F V++ + + PD S Y+ +I L + K++ A LF E+KK G++PD YT +I
Sbjct: 435 KAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILI 494
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ + G+I++A ++ M+++GC+P+ +T+T L+
Sbjct: 495 DSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALL 529
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ LDLA+KV + + K+ P++ Y+ M+ L K + A L ++K+G P+
Sbjct: 690 KDGRLDLAMKVLSQMLKDSC-NPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNV 748
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
YT +I + G +D +E + MK GC P+ +T+ ILI + AG
Sbjct: 749 VTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILINHCCAAG 797
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
E+D A +VF + K Y P + Y+ +I + K+ ++ +A ++ ++ K+ +P+
Sbjct: 657 GEIDSAQEVFLRMTK-CGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVT 715
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
YT M+ + G +KA+ M+ GC+P+ +T+T LI L AG+
Sbjct: 716 YTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGK 763
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
+T L + +D A +F ++K V PD+ Y+ +I K I A+ F E++
Sbjct: 458 VITFLCQAKRVDKAFLLFQEMKK-VGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSA 516
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
G P+ YT ++ YL+ + +A + + M C P+ +T++ LI L AGE
Sbjct: 517 GCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGE 572
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 5/114 (4%)
Query: 101 ELRRQNELDLALKVFN--FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
EL LDLA KV+ V V K + + ++ + +GK ++ A ++ E+ ++G
Sbjct: 391 ELPNPELLDLAEKVYEEMLVASCVLNKINTANFARCLCGVGKFEK---AFQIVKEMMRKG 447
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
PD YT++I Q +DKA ++ MK G P T+TILI + AG
Sbjct: 448 FVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAG 501
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P+ +Y ++ K +I A+E+F + K G P YT +I + G +D AM+
Sbjct: 640 EPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMK 699
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
M C P+ +T+T ++ L GE E
Sbjct: 700 VLSQMLKDSCNPNVVTYTAMVDGLCKTGETE 730
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y ++ L K ++++ A +L + G +P+ VY ++ + +VG ID A E
Sbjct: 606 PNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEV 665
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+ M G P T+T LI + G +L V
Sbjct: 666 FLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKV 700
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y P++ Y ++ K KQ+ + + + EG +P ++ ++ Y A
Sbjct: 302 YIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAY 361
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
+ + M GC P + + I I ++ G EEL
Sbjct: 362 KLFNRMNTCGCPPGYVVYNIFIGSI--CGREEL 392
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 56/115 (48%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
+L ++ F + ++V YK + Y + +LG AE L E+ ++ D R+
Sbjct: 115 ELCVRFFLWAERQVGYKHTGACYDALAEVLGFEDPARTAERLLREIGEDDRDVLGRLLNV 174
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
++ G+ +A+E +K G P +T+ L++ L +AG+ E+ V+++
Sbjct: 175 LVRRCCLQGLWGEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMAFRVQKE 229
>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
Length = 721
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 113 KVFNFVRKEV--WYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
K +N +R+ + + PD S YS +I L ++ A +LF E+K+ G+ PD VYT +I
Sbjct: 205 KAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLI 264
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
+ + G I++A ++ M+ GC P+ +T+T LI
Sbjct: 265 DSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIH 300
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 54/97 (55%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ +Y+ +I K I A F E++++G P+ YT +I YL+ + KA E
Sbjct: 255 PDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEV 314
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
YE M + GCTP+ +T+T LI L AG+ E + + +
Sbjct: 315 YEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYK 351
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 76/137 (55%), Gaps = 6/137 (4%)
Query: 76 SSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMI 135
++ LE G+ + + L+D L + +R LDLALKV + + + P++ +Y++MI
Sbjct: 438 TTMLECGYDPNV--YTYSSLIDRLFKDKR---LDLALKVLSKMLENSC-APNVVIYTEMI 491
Query: 136 LMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCT 195
L K + A +L ++++G +P+ YT MI + + G ++K +E + M + GC
Sbjct: 492 DGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCA 551
Query: 196 PHKLTFTILIRNLENAG 212
P+ +T+ +LI + + G
Sbjct: 552 PNFVTYRVLINHCCSTG 568
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ +LD A +VF + E Y P++ YS +I L K+K++ +A ++ ++ + P+
Sbjct: 426 KAGKLDEAQEVFTTML-ECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNV 484
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+YTEMI +VG D+A + M+ GC P+ +T+T +I +G E
Sbjct: 485 VIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVE 536
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 105 QNELDLALKVFNFVRKE--VWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
++ LDLA K + + + V K ++S +S + +GK ++ A + E+ +G PD
Sbjct: 165 KDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEK---AYNVIREMMSKGFIPD 221
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
T Y+++IG ++KA + ++ MK +G P +T LI + AG
Sbjct: 222 TSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAG 271
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
L+KE PDT +YT+MI + + ++AM+ M+AS C P+ LT+ IL+
Sbjct: 33 LEKEEFVPDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLPNVLTYRILL 84
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 45/91 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P+ +Y +I K ++ A+E+F + + G DP+ Y+ +I + +D A++
Sbjct: 411 EPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALK 470
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
M + C P+ + +T +I L G+ +
Sbjct: 471 VLSKMLENSCAPNVVIYTEMIDGLCKVGKTD 501
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 37/65 (56%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+ +I K+++++ A E++ + +G P+ YT +I + G I+KA +
Sbjct: 290 PNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQI 349
Query: 186 YETMK 190
Y+ MK
Sbjct: 350 YKIMK 354
>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
Length = 552
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R ELD A +V + +R+E KP+L ++ M+ L K ++ A ++F E+ +EGL PD
Sbjct: 57 RAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDV 116
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE-EELVAAV 220
Y ++ Y +VG + +++ + M G P +TFT LI AG E+ VA V
Sbjct: 117 VSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALV 174
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD YS +I L + K++ A ELF + + G+ PD YT +I + + G ++KA+
Sbjct: 289 PDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSL 348
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
++ M G P +T+++LI L +
Sbjct: 349 HDEMIRKGVLPDVVTYSVLINGLSKS 374
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
LD AL +RK +P + Y+ +I K ++ +A EL E++ + + PD Y+
Sbjct: 202 LDDALLAVEEMRK-CGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYS 260
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+I Y +VG +D A + + M G P +T++ LIR L
Sbjct: 261 TIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGL 301
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ YS +I K + A +L ++ K+G+ PD Y+ +I + ++ A E
Sbjct: 253 KPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACE 312
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
+E M G P + T+T LI G E ++ + I+ P+
Sbjct: 313 LFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPD 360
>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
Length = 443
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 67/128 (52%), Gaps = 8/128 (6%)
Query: 95 LLDTLTELRRQNE-LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
LL+ L ++ R E +DL K+ + PD+ Y+ +I LGK K+ A +LF E
Sbjct: 75 LLNGLCKMGRLEEAIDLLRKIV-----DNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKE 129
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ GL DT YT +I LQ G I +A Y+TM + GC P +T + +I L AG
Sbjct: 130 MASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAG- 188
Query: 214 EELVAAVR 221
+ AAVR
Sbjct: 189 -RIGAAVR 195
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + ++D AL++ ++K + PD Y+ +I L K+ +A A F E+ + G P
Sbjct: 219 LCKARKMDCALEMLAQMKK-AFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKP 277
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
D Y +I + + G D A ++ M +S C+P+ +T+ LI L
Sbjct: 278 DVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGL 324
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ S MI L K +I A +F ++ GL P+ VY+ +I + +D A+E
Sbjct: 172 PDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEM 231
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
MK + CTP +T+ ILI L +G+ VAA R
Sbjct: 232 LAQMKKAFCTPDTITYNILIDGLCKSGD---VAAAR 264
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + + A+++F + P+ +YS +I L K +++ A E+ ++KK P
Sbjct: 184 LCKAGRIGAAVRIFKSMEAR-GLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTP 242
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
DT Y +I + G + A ++ M +GC P T+ ILI AG + V
Sbjct: 243 DTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVF 302
Query: 222 RD 223
D
Sbjct: 303 DD 304
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ Y+ ++ L KNK+I A L ++ G P Y ++ ++G +++A++
Sbjct: 33 DIHTYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLL 92
Query: 187 ETMKASGCTPHKLTFTILIRNL 208
+ +GCTP +T+T LI L
Sbjct: 93 RKIVDNGCTPDVVTYTSLIDGL 114
>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic [Vitis vinifera]
Length = 867
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
Query: 68 HAMKLAKSSSKLEE---GFQSRICRLLKADLLDTLTELRRQNELDLALKVFNF-VRKEVW 123
HA++ A ++ F+SR+C D L EL + E A++ F F VR+E
Sbjct: 123 HAIRFASDDKGIDSVLLNFESRLCG--SDDYTFLLRELGNRGEWAKAIRCFEFAVRREQR 180
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
L S MI +LG+ Q+ +A+ +F EG ++ +I Y + G D+A+
Sbjct: 181 RNEQGKLASAMISILGRLGQVELAKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEAI 240
Query: 184 ETYETMKASGCTPHKLTFTILI 205
+ +ETMK+SG P+ +T+ +I
Sbjct: 241 KVFETMKSSGLKPNLVTYNAVI 262
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+Q + + +VF ++ E + P+L YS +I + K A E+F E KK GL D
Sbjct: 443 KQGKYEEVKRVFEEMKAERIF-PNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADV 501
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
+Y+ +I + G+++ A+ + M G P+ +T+ +I +G E V
Sbjct: 502 VLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGSAECV 555
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 6/127 (4%)
Query: 95 LLDTLTELRRQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
LLD + + ++DLA ++ + RK + P++ YS +I K ++ A LF E
Sbjct: 332 LLDAVC---KGGQMDLAFQIMSEMPRKHI--MPNVVTYSTVIDGYAKAGRLDEALNLFNE 386
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+K + D Y ++ +Y ++G ++A+ + M++SG +T+ L+ G+
Sbjct: 387 MKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGK 446
Query: 214 EELVAAV 220
E V V
Sbjct: 447 YEEVKRV 453
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNK-QIAMAEELFCELKKE 157
++ R D A+KVF + K KP+L Y+ +I GK A E+F E+ +
Sbjct: 227 ISAYGRSGYCDEAIKVFETM-KSSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMLRN 285
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
G+ PD + ++ V + G+ + A + M G T+ L+ + G+ +L
Sbjct: 286 GVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLA 345
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
K D Y+ ++ GK + + +F E+K E + P+ Y+ +I VY + G+ +AME
Sbjct: 428 KKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAME 487
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
+ K +G + ++ LI L
Sbjct: 488 VFREFKKAGLKADVVLYSALIDAL 511
>gi|356564951|ref|XP_003550709.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Glycine max]
Length = 488
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL+VF+ +R++ +Y+P +I++LGK+ Q A +LF + +EGL+P +YT ++
Sbjct: 109 ALQVFDMLREQTFYQPKEGTCMKLIVLLGKSGQPHRAHQLFTTMIEEGLEPTPELYTALL 168
Query: 171 GVYLQVGMIDKAMETYETMKA-SGCTPHKLTFTILIRNLENAGEEELV 217
Y + MID+A MK C P T++ LI+ +A + +LV
Sbjct: 169 AAYCRSNMIDEAFSVLNEMKKLPLCQPDVFTYSTLIKVCVDAFKFDLV 216
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R N +D A V N ++K +PD+ YS +I + + + + L+ E+ + + P+T
Sbjct: 173 RSNMIDEAFSVLNEMKKLPLCQPDVFTYSTLIKVCVDAFKFDLVQLLYEEMAERSITPNT 232
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETM-KASGCTPHKLTFTILIRNLENAGEEELV 217
++G Y + GM D+ + +M +++ C P T +I N G+ ++
Sbjct: 233 VTQNIVLGGYGKAGMFDQMEKVLSSMLQSTTCKPDVWTMNTIISVFGNMGQIDMT 287
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
D KV + + + KPD+ + +I + G QI M E+ + + + G++P+TR +
Sbjct: 248 FDQMEKVLSSMLQSTTCKPDVWTMNTIISVFGNMGQIDMTEKWYEKFRYFGIEPETRTFN 307
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+IG Y + M DK E M+ T+ +I +AG+
Sbjct: 308 ILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADAGD 353
>gi|297743170|emb|CBI36037.3| unnamed protein product [Vitis vinifera]
Length = 646
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ R ++ A+K+F + KPD+ ++ +I LGKN I A F E+++EG
Sbjct: 479 ISSFGRAGRVEEAVKIFEELENSSC-KPDIISFNSLINCLGKNGDIDEAHMRFKEMREEG 537
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
L PD Y+ +I + + ++ A ++ M A GC+P+ +T+ IL+ LE +G
Sbjct: 538 LSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSG 591
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 3/124 (2%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + ++D A F +R+E PD+ YS +I GK ++ MA LF E+ EG P
Sbjct: 517 LGKNGDIDEAHMRFKEMREE-GLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSP 575
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
+ Y ++ + G +A++ Y +K G TP +T+ +L R +G + V R
Sbjct: 576 NIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVLER--LQSGSHQKVRVRR 633
Query: 222 RDCI 225
++ I
Sbjct: 634 KNPI 637
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 59/107 (55%), Gaps = 1/107 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R N + A +V+ +R+ YK D+ Y+ ++ L K+ ++ +F ++K++ +PD
Sbjct: 237 RSNNSNKAFEVYVELRRR-GYKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDE 295
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210
YT MI + ++G D+++ ++ M G TP+ + + +I+ L N
Sbjct: 296 YTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALAN 342
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 6/120 (5%)
Query: 95 LLDTLTELRRQNE-LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
+L++L + + E LDL K+ E D +Y+ ++ LGK K+ + +L+ +
Sbjct: 408 MLESLCDAGKTTEALDLLSKI-----HEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEK 462
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+K++G PD Y +I + + G +++A++ +E ++ S C P ++F LI L G+
Sbjct: 463 MKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGD 522
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 95 LLDTLTELRRQNEL-DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
+L L +L++ ++L DL K+ K+ PD+ Y+ +I G+ ++ A ++F E
Sbjct: 443 VLSALGKLKKTSDLHDLYEKM-----KQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEE 497
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
L+ PD + +I + G ID+A ++ M+ G +P +T++ LI
Sbjct: 498 LENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLI 549
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 147 AEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
A E++ EL++ G D Y ++ + +D+ ++ MK C P + T+TI+IR
Sbjct: 244 AFEVYVELRRRGYKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDEYTYTIMIR 303
Query: 207 NLENAGEEE 215
G+ +
Sbjct: 304 MTGKIGKAD 312
>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 730
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 64/117 (54%)
Query: 89 RLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAE 148
L ++LL + L R+ + + AL+VFN++R+ V ++PD + M+ +LG+ Q+
Sbjct: 43 NLSSSELLSIMKGLGREGQWNKALEVFNWMRQSVNFRPDGVTIAVMLRILGRESQLTTVS 102
Query: 149 ELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
LF L++EG D YT +I + +A+ +E MK +G P +T+ ++I
Sbjct: 103 RLFKSLREEGYPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVII 159
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 7/146 (4%)
Query: 63 AIQAVHAMKLAKSSSKLEEGFQSRIC---RLLKADLLDTLTELRRQNELDLALKVFNFVR 119
AI A + L + +++L +S C R+ LLD + NE LK
Sbjct: 194 AITACASGSLCEEATELFTQMKSSNCTPDRVTYNALLDVYGKAGWYNEAANVLKEM---- 249
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+ P++ Y++++ G+ A E+ + +G++PD YT ++ Y + G +
Sbjct: 250 ESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKV 309
Query: 180 DKAMETYETMKASGCTPHKLTFTILI 205
++AME Y M+ S CTP+ TF LI
Sbjct: 310 EQAMEIYNQMRTSNCTPNSFTFNALI 335
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL Y+ +I K+ Q++ A +F E+ G+ PD+ Y +G Y+ GM +A+
Sbjct: 606 PDLVSYNTVIFSYSKHGQLSSATRIFHEMVSNGIQPDSFTYNTFVGCYVNGGMFPEALSV 665
Query: 186 YETMKASGCTPHKLTFTILI 205
+ M +GC P ++T+ L+
Sbjct: 666 VKHMHKTGCKPDEVTYRTLV 685
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ ++ ++ GKN + ++F +KK G +PD + +I Y + G D+A+
Sbjct: 360 EPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALS 419
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
Y+ M +GCTP TF L+ L G E
Sbjct: 420 IYDGMLQAGCTPDLATFNTLLAALAREGRWE 450
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 85/172 (49%), Gaps = 7/172 (4%)
Query: 58 VLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLL---DTLTELRRQNELDLALKV 114
V +E + A L +++++++ S + + ++ D+ L+ R +++ A+++
Sbjct: 259 VTYNELLSAFGRAGLCNAAAEMKD---SMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEI 315
Query: 115 FNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYL 174
+N +R P+ ++ +I M GKNK + +F +++ G++PD + ++G +
Sbjct: 316 YNQMRTSNC-TPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFG 374
Query: 175 QVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
+ GM + ++ + MK +G P K TF ILI G + ++ +Q
Sbjct: 375 KNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQ 426
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK-NKQIAMAEELFCELKKE 157
++ L R + AL F + KE +P L Y+ +I + GK + ELF E+K +
Sbjct: 124 ISALSRNRKFKEALGFFEQM-KEAGPQPSLVTYNVIIDLYGKKGRSWENILELFEEMKAQ 182
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
G+ PD Y I + ++A E + MK+S CTP ++T+ L+ AG
Sbjct: 183 GIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNALLDVYGKAGWYNEA 242
Query: 218 AAVRRD 223
A V ++
Sbjct: 243 ANVLKE 248
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y D S ++ MI M GK + A + F L+ GL+PD Y ++G+Y + GM K
Sbjct: 534 YLSDTSTFNAMISMYGKKGMMDKATDTFALLRSTGLEPDVVTYNCLMGMYGREGMYRKCE 593
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
T A+G TP +++ +I + G +L +A R
Sbjct: 594 ATLRECMAAGQTPDLVSYNTVIFSYSKHG--QLSSATR 629
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%)
Query: 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM 189
L +L+ K + AE+ F ++ G DT + MI +Y + GM+DKA +T+ +
Sbjct: 505 LLKTFVLVYSKCSLVDEAEDAFLAMRHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALL 564
Query: 190 KASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
+++G P +T+ L+ G A R+C+ + P+
Sbjct: 565 RSTGLEPDVVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPD 607
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD Y+ I A ELF ++K PD Y ++ VY + G ++A
Sbjct: 185 QPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNALLDVYGKAGWYNEAAN 244
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ M+++GC P+ +T+ L+ AG
Sbjct: 245 VLKEMESAGCLPNIVTYNELLSAFGRAG 272
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ ++ + GK A + E++ G P+ Y E++ + + G+ + A E
Sbjct: 221 PDRVTYNALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEM 280
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
++M + G P T+T L+ AG+ E
Sbjct: 281 KDSMVSKGIEPDVFTYTSLLSAYSRAGKVE 310
>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 864
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 76/153 (49%), Gaps = 7/153 (4%)
Query: 87 ICRLLKAD-LLDT------LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
+C++LK LLD+ L R L ALKVF+ + +E P+ YS +I L
Sbjct: 218 MCKILKVGFLLDSHIVTSLLLGFCRGLNLRDALKVFDLMSREGTCAPNSVSYSILIHGLC 277
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
+ ++ A L ++ ++G P TR YT +I G+IDKA ++ M A GC P+
Sbjct: 278 EVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVH 337
Query: 200 TFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
T+T+LI L G+ E V R ++ FP
Sbjct: 338 TYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPS 370
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%)
Query: 137 MLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP 196
ML K ++ + ++ K GL P YT ++ ++ G I + E MK SGC P
Sbjct: 555 MLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLP 614
Query: 197 HKLTFTILIRNLENAGEEE 215
+ +TI+I L G E
Sbjct: 615 NVYPYTIIINGLCQFGRVE 633
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Query: 113 KVFNFVRKEV--WYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
K FN + + KP++ Y+ +I L ++ +I A + ++ K+G+ P Y +I
Sbjct: 319 KAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALI 378
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
Y + G + A E M+ C P+ TF L+ L G+
Sbjct: 379 NGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGK 421
Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+ +I L + ++ AE+L ++ G+ P+ YT M+ Y+ G +D+A+ET
Sbjct: 614 PNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALET 673
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
M G + ++ L+R
Sbjct: 674 VRAMVERGYELNDRIYSSLLRGF 696
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + Y+ +I K+ ++ A EL ++K P+ R + E++ +VG KA+
Sbjct: 369 PSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHL 428
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+ M +G +P +++ +LI L G
Sbjct: 429 LKRMLDNGLSPDIVSYNVLIDGLCREGH 456
>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
Length = 604
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
N+ AL +F +R + + +PD+ Y+++I LGK +I A FCE+++EG PDT
Sbjct: 246 NDAHGALSLFEEMRHQ-YCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVF 304
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
MI + G +D AM+ ++ M+ C P +T+ +I+ L
Sbjct: 305 MNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKAL 347
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 6/133 (4%)
Query: 80 EEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
E+GF C L+D L + +R DLA ++F + KE +Y+ MI LG
Sbjct: 401 EKGFPP--CPAAYCSLIDALGKAKR---YDLACELFQEL-KENCGSSSARVYAVMIKHLG 454
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
K ++ A +F E+ K G PD Y ++ + GM+D+A+ T M+ GC P
Sbjct: 455 KAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDIN 514
Query: 200 TFTILIRNLENAG 212
++ I++ L G
Sbjct: 515 SYNIILNGLAKTG 527
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 72/152 (47%)
Query: 61 SEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRK 120
S+ ++ + K+ + + + ++R C+ + + L + + + +++N +
Sbjct: 130 SDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMST 189
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E PD YS +I K + A +L E+K+ G+ P T++YT +I ++ +
Sbjct: 190 EGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAH 249
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAG 212
A+ +E M+ C P T+T LIR L AG
Sbjct: 250 GALSLFEEMRHQYCRPDVFTYTELIRGLGKAG 281
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+ +L R+ D A+++ N + KE+ +P +Y+ +I + K A LF E+
Sbjct: 203 LISAFCKLGRR---DSAIQLLNEM-KEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEM 258
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ + PD YTE+I + G ID+A + M+ GC P + +I L AG
Sbjct: 259 RHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAG 316
>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Vitis vinifera]
Length = 725
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 76/155 (49%)
Query: 61 SEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRK 120
SE ++ + K+ + + + R C+ + L ++ + +++N +
Sbjct: 163 SEIVKVLGKAKMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCN 222
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E PD YS +I GK + A LF E+K+ GL P ++YT ++G+Y ++G ++
Sbjct: 223 EGDCLPDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVE 282
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
KA+ + MK GC T+T LI+ + AG+ E
Sbjct: 283 KALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVE 317
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)
Query: 80 EEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
E+GF C L++ L + +R + A ++F +R+ Y +Y+ MI LG
Sbjct: 434 EKGFAP--CPAAYCSLINALGKAKR---YEAANELFQELRENCGYS-SARVYAVMIKHLG 487
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
K +++ A +LF E+KK G +PD Y ++ ++VGM D+A TM+ +GCTP
Sbjct: 488 KCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLN 547
Query: 200 TFTILIRNLENAG 212
+ I++ G
Sbjct: 548 SHNIILNGFARTG 560
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 45/78 (57%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+++I +GK ++ A +F + KEG PD + +I + + G + A++ +E M+
Sbjct: 303 YTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEME 362
Query: 191 ASGCTPHKLTFTILIRNL 208
+ CTP+ +T+ +I+ L
Sbjct: 363 SLQCTPNVVTYNTVIKAL 380
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Query: 88 CRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMA 147
C L + + + + +++ A +F + KE KPD+ L +++I +LGK ++A A
Sbjct: 296 CALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKE-GCKPDVVLINNLINLLGKAGRLADA 354
Query: 148 EELFCELKKEGLDPDTRVYTEMI-GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+LF E++ P+ Y +I ++ +A YE MK +G P T++ILI
Sbjct: 355 IKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILI 413
>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
Length = 638
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 76/155 (49%)
Query: 61 SEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRK 120
SE ++ + K+ + + + R C+ + L ++ + +++N +
Sbjct: 163 SEIVKVLGKAKMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCN 222
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E PD YS +I GK + A LF E+K+ GL P ++YT ++G+Y ++G ++
Sbjct: 223 EGDCLPDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVE 282
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
KA+ + MK GC T+T LI+ + AG+ E
Sbjct: 283 KALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVE 317
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)
Query: 80 EEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
E+GF C L++ L + +R + A ++F +R+ Y +Y+ MI LG
Sbjct: 434 EKGFAP--CPAAYCSLINALGKAKR---YEAANELFQELRENCGYS-SARVYAVMIKHLG 487
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
K +++ A +LF E+KK G +PD Y ++ ++VGM D+A TM+ +GCTP
Sbjct: 488 KCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLN 547
Query: 200 TFTILIRNLENAG 212
+ I++ G
Sbjct: 548 SHNIILNGFARTG 560
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 45/78 (57%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+++I +GK ++ A +F + KEG PD + +I + + G + A++ +E M+
Sbjct: 303 YTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEME 362
Query: 191 ASGCTPHKLTFTILIRNL 208
+ CTP+ +T+ +I+ L
Sbjct: 363 SLQCTPNVVTYNTVIKAL 380
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Query: 88 CRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMA 147
C L + + + + +++ A +F + KE KPD+ L +++I +LGK ++A A
Sbjct: 296 CALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKE-GCKPDVVLINNLINLLGKAGRLADA 354
Query: 148 EELFCELKKEGLDPDTRVYTEMI-GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+LF E++ P+ Y +I ++ +A YE MK +G P T++ILI
Sbjct: 355 IKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILI 413
>gi|449484944|ref|XP_004157025.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g16010-like [Cucumis sativus]
Length = 637
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%)
Query: 113 KVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGV 172
+++N + E PD YS +I GK ++ A LF E+K+ GL P ++YT ++ +
Sbjct: 215 ELYNEICSEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAM 274
Query: 173 YLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
Y ++ ++ A+ E MK GC P T+T LI+ L G
Sbjct: 275 YFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLGKVG 314
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 12/136 (8%)
Query: 80 EEGFQSRICRLLKADLLDTLTELRR---QNELDLALKVFNFVRKEVWYKPDLSLYSDMIL 136
E+GF C L+D+L +R NEL LK E + +Y+ MI
Sbjct: 434 EKGFPP--CPAAYCSLIDSLGRAKRYEAANELFQELK-------ENCGRSSARVYAVMIK 484
Query: 137 MLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP 196
G +++ A +LFCE +K G PD Y ++ ++ GMID+A M+ +GCTP
Sbjct: 485 HFGNCGRLSDAVDLFCEXEKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTP 544
Query: 197 HKLTFTILIRNLENAG 212
+ I++ L G
Sbjct: 545 DIKSHNIILNGLAKTG 560
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
D A ++F+ + KE P +Y+ ++ M K ++ A L E+K +G P YTE
Sbjct: 247 DFAFRLFDEM-KENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTE 305
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+I +VG +D A + M GC P + LI L AG E
Sbjct: 306 LIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLE 352
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 45/83 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + Y+++I LGK ++ A LF + K+G PD + +I + + G ++ A++
Sbjct: 298 PTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKL 357
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ M + C P+ +T+ +I+ +
Sbjct: 358 FGKMDSLQCAPNVVTYNTVIKAI 380
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
+S+++ +LGK K + A +F ++K +P VY +I + + G +K E Y +
Sbjct: 162 WSEILKILGKAKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEIC 221
Query: 191 ASG-CTPHKLTFTILI 205
+ G C+P +T++ LI
Sbjct: 222 SEGNCSPDTITYSALI 237
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI-GVYLQVGMIDKAM 183
KPD+ L +++I +LG+ ++ A +LF ++ P+ Y +I ++ +A
Sbjct: 332 KPDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAA 391
Query: 184 ETYETMKASGCTPHKLTFTILI 205
+E MKA+G P T+ ILI
Sbjct: 392 LWFEKMKANGIAPSSFTYAILI 413
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 47/98 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ ++ + + I A L +++ G PD + + ++ + G +A+E
Sbjct: 509 PDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEM 568
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
+ MK S P +++ ++ L AG E+ A + R+
Sbjct: 569 FTKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMRE 606
>gi|147845950|emb|CAN82028.1| hypothetical protein VITISV_000613 [Vitis vinifera]
Length = 790
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ R ++ A+K+F + KPD+ ++ +I LGKN I A F E+++EG
Sbjct: 543 ISSFGRAGRVEEAVKIFEELENSSC-KPDIISFNSLINCLGKNGDIDEAHMRFKEMREEG 601
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
L PD Y+ +I + + ++ A ++ M A GC+P+ +T+ IL+ LE +G
Sbjct: 602 LSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSG 655
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 3/124 (2%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + ++D A F +R+E PD+ YS +I GK ++ MA LF E+ EG P
Sbjct: 581 LGKNGDIDEAHMRFKEMREE-GLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSP 639
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
+ Y ++ + G +A++ Y +K G TP +T+ +L R +G + V R
Sbjct: 640 NIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVLER--LQSGSHQKVRVRR 697
Query: 222 RDCI 225
++ I
Sbjct: 698 KNPI 701
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 6/120 (5%)
Query: 95 LLDTLTELRRQNE-LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
+L++L + + E LDL K+ E D +Y+ ++ LGK K+ + +L+ +
Sbjct: 472 MLESLCDAGKTTEALDLLSKI-----HEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEK 526
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+K++G PD Y +I + + G +++A++ +E ++ S C P ++F LI L G+
Sbjct: 527 MKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGD 586
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 93 ADLLDTLTELRRQN-----ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMA 147
A+LLD LT + E+D VF ++++ +PD Y+ MI M GK + +
Sbjct: 288 AELLDCLTVALDNDKIISVEVDQVYMVFKDMKRK-HCEPDEYTYTIMIRMTGKIGKADES 346
Query: 148 EELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN 207
LF E+ ++G P+ Y MI M+DK + + M + C P+ TF++++
Sbjct: 347 LTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVENNCRPNGFTFSVILNV 406
Query: 208 LENAGE 213
L G+
Sbjct: 407 LVAEGQ 412
Score = 43.5 bits (101), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 95 LLDTLTELRRQNEL-DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
+L L +L++ ++L DL K+ K+ PD+ Y+ +I G+ ++ A ++F E
Sbjct: 507 VLSALGKLKKTSDLHDLYEKM-----KQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEE 561
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
L+ PD + +I + G ID+A ++ M+ G +P +T++ LI
Sbjct: 562 LENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLI 613
>gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Cucumis sativus]
Length = 637
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%)
Query: 113 KVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGV 172
+++N + E PD YS +I GK ++ A LF E+K+ GL P ++YT ++ +
Sbjct: 215 ELYNEICSEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAM 274
Query: 173 YLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
Y ++ ++ A+ E MK GC P T+T LI+ L G
Sbjct: 275 YFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLGKVG 314
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 12/136 (8%)
Query: 80 EEGFQSRICRLLKADLLDTLTELRR---QNELDLALKVFNFVRKEVWYKPDLSLYSDMIL 136
E+GF C L+D+L +R NEL LK E + +Y+ MI
Sbjct: 434 EKGFPP--CPAAYCSLIDSLGRAKRYEAANELFQELK-------ENCGRSSARVYAVMIK 484
Query: 137 MLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP 196
G +++ A +LFCE+KK G PD Y ++ ++ GMID+A M+ +GCTP
Sbjct: 485 HFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTP 544
Query: 197 HKLTFTILIRNLENAG 212
+ I++ L G
Sbjct: 545 DIKSHNIILNGLAKTG 560
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
D A ++F+ + KE P +Y+ ++ M K ++ A L E+K +G P YTE
Sbjct: 247 DFAFRLFDEM-KENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTE 305
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+I +VG +D A + M GC P + LI L AG E
Sbjct: 306 LIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLE 352
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 45/83 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + Y+++I LGK ++ A LF + K+G PD + +I + + G ++ A++
Sbjct: 298 PTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKL 357
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ M + C P+ +T+ +I+ +
Sbjct: 358 FGKMDSLQCAPNVVTYNTVIKAI 380
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
+S+++ +LGK K + A +F ++K +P VY +I + + G +K E Y +
Sbjct: 162 WSEILKILGKAKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEIC 221
Query: 191 ASG-CTPHKLTFTILI 205
+ G C+P +T++ LI
Sbjct: 222 SEGNCSPDTITYSALI 237
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI-GVYLQVGMIDKAM 183
KPD+ L +++I +LG+ ++ A +LF ++ P+ Y +I ++ +A
Sbjct: 332 KPDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAA 391
Query: 184 ETYETMKASGCTPHKLTFTILI 205
+E MKA+G P T+ ILI
Sbjct: 392 LWFEKMKANGIAPSSFTYAILI 413
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 50/104 (48%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K++ PD+ Y+ ++ + + I A L +++ G PD + + ++ + G
Sbjct: 503 KKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGP 562
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
+A+E + MK S P +++ ++ L AG E+ A + R+
Sbjct: 563 KRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMRE 606
>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 4/116 (3%)
Query: 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
A LLD +Q L A ++F + + KP+L +Y+ ++ + K+ + A ELF
Sbjct: 329 AILLDGFC---KQGYLGKAFRLFR-AMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFS 384
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
EL GL P+ ++YT +I + G++D+A+E + M+ GC P + ++ ++IR
Sbjct: 385 ELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGF 440
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 6/127 (4%)
Query: 82 GFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141
G C L L++ +L+R +DL V K + +P + ++ +I LGK
Sbjct: 5 GLSPNTCTL--NILINCFCQLQR---VDLGFSVLAKGIK-LGLQPTIVTFTTLINGLGKV 58
Query: 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF 201
+ A A ELF ++ G PD YT +I ++G A ++ M+ +GC + +T+
Sbjct: 59 GKFAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTY 118
Query: 202 TILIRNL 208
+ LI +L
Sbjct: 119 STLIHSL 125
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ YS +I K K+I A++LF E+ +G P+ Y +I Q+G + +A +
Sbjct: 252 KPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQD 311
Query: 185 TYETMKASGCTPHKLTFTILI 205
++ M +G P+ T+ IL+
Sbjct: 312 LFKNMHTNGNLPNLYTYAILL 332
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%)
Query: 156 KEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
K GL P +T +I +VG +A+E ++ M A GC P T+T +I L GE
Sbjct: 38 KLGLQPTIVTFTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETA 97
Query: 216 LVAAV 220
L A +
Sbjct: 98 LAAGL 102
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E+ +PD+ Y+ ++ ++ A +LF + +G PD Y+ +I Y + ID
Sbjct: 213 EMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRID 272
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+A + + M G TP+ +++ LI L G
Sbjct: 273 EAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLG 304
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD Y+ +I L K + A+A LF ++++ G + Y+ +I + +++A++
Sbjct: 77 QPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALD 136
Query: 185 TYETMKASGCTPHKLTFTILIRNLEN 210
+ MKA +P T+T LI+ L N
Sbjct: 137 IFSYMKAKDISPTIFTYTSLIQGLCN 162
>gi|224133034|ref|XP_002327945.1| predicted protein [Populus trichocarpa]
gi|222837354|gb|EEE75733.1| predicted protein [Populus trichocarpa]
Length = 1450
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 12/128 (9%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A +V+ ++ WY P+ + S ++ +LGK Q +A E+F + ++ +VY M+
Sbjct: 205 AFEVYEWLNLRHWYSPNARMLSTILAVLGKANQEPLAVEVFTR-AEPSVENTVKVYNAMM 263
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE------ELVAAVRR-- 222
GVY + G +K E ++ M+ GC P ++F LI AGE EL+ VRR
Sbjct: 264 GVYARSGKFNKVQELFDLMRERGCEPDLVSFNTLINARLKAGEMTPNLAIELLTEVRRSG 323
Query: 223 ---DCIQY 227
D I Y
Sbjct: 324 LRPDIITY 331
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+Q + DLAL+++ + K PD+ Y+ +I LGK +I A + E+ G+ P
Sbjct: 445 KQGQNDLALQLYRDM-KSSGRNPDVITYTVLIDSLGKTNKIEEAAGMMSEMLNTGVKPTL 503
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
R Y+ +I Y + G +A ET++ M SG P +L +++++
Sbjct: 504 RTYSALICGYAKAGKPVEAEETFDCMLRSGTRPDQLAYSVML 545
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP L YS +I K + AEE F + + G PD Y+ M+ ++L+ +AM
Sbjct: 500 KPTLRTYSALICGYAKAGKPVEAEETFDCMLRSGTRPDQLAYSVMLDIHLRFNEPKRAMT 559
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
Y+ M G P + +++R L NA + E + V RD
Sbjct: 560 FYKEMIHDGIMPEHSLYELMLRTLGNANKVEDIGRVVRD 598
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 89 RLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAE 148
++ K+ +L L R + K+++ + K Y P + LY M +L + KQ+ E
Sbjct: 882 KISKSSILLMLDAFARAGNIFEVKKIYHGM-KAAGYFPSMHLYRVMAQLLCRGKQVRDVE 940
Query: 149 ELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ E+++ G PD ++ ++ +Y+ + K + Y+ +K G P + T+ ILI
Sbjct: 941 AMLSEMEEAGFKPDLSIWNSVLKMYVAIDDFRKTTQIYQRIKEDGLEPDEDTYNILI 997
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A ++FN + ++ PD Y+ + + + +++ E+ K G D Y MI
Sbjct: 382 AEQLFNDLESRGFF-PDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFGKDEMTYNTMI 440
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+Y + G D A++ Y MK+SG P +T+T+LI +L + E A +
Sbjct: 441 HMYGKQGQNDLALQLYRDMKSSGRNPDVITYTVLIDSLGKTNKIEEAAGM 490
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 1/125 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ R + L+ A+ VF+ + +PDL Y+ MI + G+ AE+LF +L+ G
Sbjct: 335 ISACSRASNLEEAVNVFDDMVAH-HCEPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRG 393
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
PD Y + + + G ++K + E M G ++T+ +I G+ +L
Sbjct: 394 FFPDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFGKDEMTYNTMIHMYGKQGQNDLAL 453
Query: 219 AVRRD 223
+ RD
Sbjct: 454 QLYRD 458
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+ V +P L Y ++ GK + + AEELF EL+ G D Y M+ +Y G
Sbjct: 1017 RTVGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSTGCKLDRSFYHIMMKIYRNSGSH 1076
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
KA + MK G P T +L+ + ++G+ +
Sbjct: 1077 SKAQRLFSMMKDEGVEPTIATMHLLMVSYGSSGQPQ 1112
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
++ + D Y+ MI M GK Q +A +L+ ++K G +PD YT +I + I+
Sbjct: 426 KIGFGKDEMTYNTMIHMYGKQGQNDLALQLYRDMKSSGRNPDVITYTVLIDSLGKTNKIE 485
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+A M +G P T++ LI AG+
Sbjct: 486 EAAGMMSEMLNTGVKPTLRTYSALICGYAKAGK 518
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
+LA+++ VR+ +PD+ Y+ +I + + A +F ++ +PD Y
Sbjct: 310 NLAIELLTEVRRS-GLRPDIITYNTLISACSRASNLEEAVNVFDDMVAHHCEPDLWTYNA 368
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
MI VY + G+ KA + + +++ G P +++ + G E V +
Sbjct: 369 MISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSFLYAFAREGNVEKVKDI 420
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 50/93 (53%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE +PD Y+ +I+M ++ + L E++ GL+P Y ++ + + ++
Sbjct: 982 KEDGLEPDEDTYNILIVMYCRDHRPKEGLVLMDEMRTVGLEPKLDTYKSLVASFGKQQLV 1041
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
++A E +E ++++GC + + I+++ N+G
Sbjct: 1042 EQAEELFEELQSTGCKLDRSFYHIMMKIYRNSG 1074
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E +KPDLS+++ ++ M +++ +K++GL+PD Y +I +Y +
Sbjct: 947 EEAGFKPDLSIWNSVLKMYVAIDDFRKTTQIYQRIKEDGLEPDEDTYNILIVMYCRDHRP 1006
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
+ + + M+ G P T+ L+ + G+++LV
Sbjct: 1007 KEGLVLMDEMRTVGLEPKLDTYKSLVASF---GKQQLV 1041
>gi|357127305|ref|XP_003565323.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Brachypodium distachyon]
Length = 746
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
Query: 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
+T + E+D A +V++ + KP++ LYS MI L + ++ AE LF E+ +
Sbjct: 459 VITGFCKLGEVDRASRVWDTM-VAAGIKPNVVLYSAMIDGLARCGKMTEAELLFREMIEA 517
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
P+ Y+ M+ Y Q+G +A+ +E M GCTP+ +T+++LI L N G +
Sbjct: 518 KCVPNIMTYSSMVRGYFQIGDSSQALSFWEDMLRIGCTPNAVTYSVLINGLCNVGRSK 575
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 50/88 (56%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + Y ++ L + ++ A ++ E++ +GL P+ V++ +I + ++G +D+A
Sbjct: 416 PGVMTYGAVVDGLVRCGRLEDACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEVDRASRV 475
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
++TM A+G P+ + ++ +I L G+
Sbjct: 476 WDTMVAAGIKPNVVLYSAMIDGLARCGK 503
>gi|357479161|ref|XP_003609866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510921|gb|AES92063.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 496
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 67/129 (51%), Gaps = 1/129 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL+ + +R++ +Y+P Y +I++LGK+ Q A +LF + +EG DP +YT ++
Sbjct: 121 ALETLDMLREQSFYQPREGTYMKLIVLLGKSGQPQRAHQLFTAMIEEGCDPTPELYTALL 180
Query: 171 GVYLQVGMIDKAMETYETMKASG-CTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVE 229
Y + MID+A+ + MK C P T++ LI+ + + EL+ + + Q
Sbjct: 181 AAYCRSNMIDEALSILDEMKNHPLCQPDVFTYSTLIKACVDIFKFELIELLYEEMAQRSI 240
Query: 230 FPERFLEEV 238
P + +
Sbjct: 241 MPNTVTQNI 249
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ + +I + G QI M E+ + + + G++P+TR + +IG Y + M DK
Sbjct: 277 KPDVWTMNTIIGVFGNMGQIDMMEKWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSS 336
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
E M+ T+ +I AG+
Sbjct: 337 VMEYMRKLQFPWTTSTYNNVIEAFAEAGD 365
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R N +D AL + + ++ +PD+ YS +I + + E L+ E+ + + P+T
Sbjct: 185 RSNMIDEALSILDEMKNHPLCQPDVFTYSTLIKACVDIFKFELIELLYEEMAQRSIMPNT 244
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETM-KASGCTPHKLTFTILIRNLENAGEEELV 217
++ Y + GM D+ + M +++ C P T +I N G+ +++
Sbjct: 245 VTQNIVLNGYGKAGMFDQMEKVLSGMLQSADCKPDVWTMNTIIGVFGNMGQIDMM 299
>gi|19071826|dbj|BAB85657.1| PnC401 homologue [Arabidopsis thaliana]
Length = 831
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 92 KADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELF 151
+ L++ L E R E A +FN + +E +KP L Y+ ++ L + K L
Sbjct: 322 RTKLMNGLIERGRPQE---AHSIFNTLIEE-GHKPSLITYTTLVTALTRQKHFHSLLSLI 377
Query: 152 CELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
+++K GL PDT ++ +I + G +D+AM+ +E MK SGC P TF LI+
Sbjct: 378 SKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKI 437
Query: 212 GEEE 215
G+ E
Sbjct: 438 GKLE 441
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
N++D +V + + +E KPD+ +S ++ + EE++ ++ + G+DPD
Sbjct: 580 NDMDGVGEVVDLM-EEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHA 638
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
++ + Y + G +KA + M+ G P+ + +T +I +AGE
Sbjct: 639 FSILAKGYARAGEPEKAKQILNQMRKFGVRPNVVIYTQIISGWCSAGE 686
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ +S + + + A+++ +++K G+ P+ +YT++I + G + KAM+
Sbjct: 634 PDIHAFSILAKGYARAGEPEKAKQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQV 693
Query: 186 YETM-KASGCTPHKLTFTILIRNLENA 211
Y+ M G +P+ T+ LI A
Sbjct: 694 YKKMCGIVGLSPNLTTYETLIWGFGEA 720
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
+ +++ AL+ F + KE+ P+L +++ +I + E+ +++ G+ PD
Sbjct: 544 EGKMEEALRFF-YRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVV 602
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ ++ + VG + + E Y M G P F+IL + AGE E
Sbjct: 603 TFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPE 653
>gi|29294052|gb|AAO73889.1| protein kinase family [Arabidopsis thaliana]
Length = 854
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 92 KADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELF 151
+ L++ L E R E A +FN + +E +KP L Y+ ++ L + K L
Sbjct: 345 RTKLMNGLIERGRPQE---AHSIFNTLIEE-GHKPSLITYTTLVTALTRQKHFHSLLSLI 400
Query: 152 CELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
+++K GL PDT ++ +I + G +D+AM+ +E MK SGC P TF LI+
Sbjct: 401 SKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKI 460
Query: 212 GEEE 215
G+ E
Sbjct: 461 GKLE 464
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
N++D +V + + +E KPD+ +S ++ + EE++ ++ + G+DPD
Sbjct: 603 NDMDGVGEVVDLM-EEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHA 661
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
++ + Y + G +KA + M+ G P+ + +T +I +AGE
Sbjct: 662 FSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGE 709
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ +S + + + AE++ +++K G+ P+ +YT++I + G + KAM+
Sbjct: 657 PDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQV 716
Query: 186 YETM-KASGCTPHKLTFTILIRNLENA 211
Y+ M G +P+ T+ LI A
Sbjct: 717 YKKMCGIVGLSPNLTTYETLIWGFGEA 743
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
+ +++ AL+ F + KE+ P+L +++ +I + E+ +++ G+ PD
Sbjct: 567 EGKMEEALRFF-YRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVV 625
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ ++ + VG + + E Y M G P F+IL + AGE E
Sbjct: 626 TFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPE 676
>gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Glycine max]
Length = 631
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 76/155 (49%)
Query: 61 SEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRK 120
SE ++ + K+ + + + R CR + + L ++ + +++N +
Sbjct: 157 SEIVRILGKAKMVNRALSVFYQVKGRKCRPTASTYNSIILMLMQEGHHEKVHELYNEMCS 216
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
EV PD YS +I K + A LF E+K+ GL P ++YT ++G+Y +VG ++
Sbjct: 217 EVHCFPDTVTYSALISAFAKLNRDDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVE 276
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+A+ + M+A C T+T LIR L +G E
Sbjct: 277 EALGLVKEMRARRCLLTVFTYTELIRGLGKSGRVE 311
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 6/133 (4%)
Query: 80 EEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
E+GF C L++TL +R D+A ++F + KE +Y+ MI G
Sbjct: 428 EKGFPP--CPAAYCSLINTLGVAKR---YDVANELFQEL-KENCGCSSARVYAVMIKHFG 481
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
K ++ A LF E+KK G PD Y ++ ++ +D+A + TM+ +GCTP
Sbjct: 482 KCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTMEENGCTPDIN 541
Query: 200 TFTILIRNLENAG 212
+ I++ L G
Sbjct: 542 SHNIILNGLARTG 554
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV-GMIDKAM 183
KPD+ L +++I +LG++ + A +LF E+K P+ Y +I + + +A
Sbjct: 326 KPDVVLMNNLINILGRSNHLRDAIKLFDEMKLLNCAPNVVTYNTIIKSLFEAKAPLSEAS 385
Query: 184 ETYETMKASGCTPHKLTFTILI 205
+E MK G P T++ILI
Sbjct: 386 SWFERMKKDGIVPSSFTYSILI 407
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 43/78 (55%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+++I LGK+ ++ A + + K+G PD + +I + + + A++ ++ MK
Sbjct: 297 YTELIRGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILGRSNHLRDAIKLFDEMK 356
Query: 191 ASGCTPHKLTFTILIRNL 208
C P+ +T+ +I++L
Sbjct: 357 LLNCAPNVVTYNTIIKSL 374
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 6/128 (4%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ-IAMAEELFCELKKEGLD 160
L R N L A+K+F+ + K + P++ Y+ +I L + K ++ A F +KK+G+
Sbjct: 339 LGRSNHLRDAIKLFDEM-KLLNCAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIV 397
Query: 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE----EEL 216
P + Y+ +I Y + ++KA+ E M G P + LI L A EL
Sbjct: 398 PSSFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVANEL 457
Query: 217 VAAVRRDC 224
++ +C
Sbjct: 458 FQELKENC 465
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
L+ A+ +FN ++K + PD+ Y+ ++ + + +++ A LF +++ G PD +
Sbjct: 486 LNEAINLFNEMKK-LGCTPDVYAYNALMTGMVRAERMDEAFSLFRTMEENGCTPDINSHN 544
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
++ + G A+E + MK S P ++F ++ L AG
Sbjct: 545 IILNGLARTGGPKGALEMFTKMKNSTIKPDVVSFNTILGCLSRAG 589
>gi|115447913|ref|NP_001047736.1| Os02g0679200 [Oryza sativa Japonica Group]
gi|50253128|dbj|BAD29374.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113537267|dbj|BAF09650.1| Os02g0679200 [Oryza sativa Japonica Group]
Length = 491
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ M+ LG Q+ A ++F E+ KEG P Y +I V + G ++ A+
Sbjct: 271 KPDVVSYTTMVHGLGVAGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNVEDAVT 330
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
++ M+ G P+ +T+T+LIR L +AG+
Sbjct: 331 VFDGMRVKGYVPNVVTYTVLIRGLCHAGK 359
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
+L+ A KVF+ + KE P ++ Y+ +I ++ K + A +F ++ +G P+
Sbjct: 288 GQLEKARKVFDEMAKE-GCAPSVATYNALIQVICKKGNVEDAVTVFDGMRVKGYVPNVVT 346
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
YT +I G ID+ ++ E MK GC P T+ +LIR L GE E
Sbjct: 347 YTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIVQTYNVLIRYLFEEGEME 396
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG-----LDPDTRVYTEMIGVYLQ 175
E P + Y+ ++ + Q+ A + F ++KK G PD YT M+
Sbjct: 227 ESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKKRGSKDESCKPDVVSYTTMVHGLGV 286
Query: 176 VGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
G ++KA + ++ M GC P T+ LI+ + G E
Sbjct: 287 AGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNVE 326
>gi|242064536|ref|XP_002453557.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
gi|241933388|gb|EES06533.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
Length = 390
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 52/89 (58%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ MI LGKN + A LF +++++G DPD Y+ +I + + +D A
Sbjct: 249 KPDVITYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECFGKSNKVDMACS 308
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
++ M A GC P+ +T+ IL+ LE G+
Sbjct: 309 LFDEMIAQGCVPNIVTYNILLDCLERHGK 337
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ +Y+ + LGK KQ++ L+ ++K G+ PD Y MI + +VG++DKA E +
Sbjct: 181 DVGMYNIIFSALGKLKQVSFMSSLYDKMKANGVAPDVFTYNIMISSFGRVGLVDKASELF 240
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGE 213
E M S C P +T+ +I L G+
Sbjct: 241 EEMDDSSCKPDVITYNSMINCLGKNGD 267
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 1/143 (0%)
Query: 64 IQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVW 123
I + + L +S+L E C+ + L + +LD A +F ++ E
Sbjct: 224 ISSFGRVGLVDKASELFEEMDDSSCKPDVITYNSMINCLGKNGDLDEAHMLFKDMQ-EKG 282
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y PD+ YS +I GK+ ++ MA LF E+ +G P+ Y ++ + G +A
Sbjct: 283 YDPDVFTYSILIECFGKSNKVDMACSLFDEMIAQGCVPNIVTYNILLDCLERHGKTREAH 342
Query: 184 ETYETMKASGCTPHKLTFTILIR 206
+ YET+K G P +T++IL R
Sbjct: 343 KLYETLKQQGLAPDSITYSILER 365
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 4/125 (3%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI G+ + A ELF E+ PD Y MI + G +D+A
Sbjct: 215 PDVFTYNIMISSFGRVGLVDKASELFEEMDDSSCKPDVITYNSMINCLGKNGDLDEAHML 274
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE----RFLEEVYQK 241
++ M+ G P T++ILI + + ++ ++ + I P L + ++
Sbjct: 275 FKDMQEKGYDPDVFTYSILIECFGKSNKVDMACSLFDEMIAQGCVPNIVTYNILLDCLER 334
Query: 242 HRKTQ 246
H KT+
Sbjct: 335 HGKTR 339
Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ +I M GK + E+ +G + Y +I + M+DKA+
Sbjct: 8 PDAYTYTILIRMSGKAGKATKFVSFLEEMVSKGCVLNLIAYNTVIEALGKNKMVDKAIFM 67
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
M S C P++ T++I++ L G+
Sbjct: 68 LSKMIESDCQPNQFTYSIMLDVLATGGQ 95
>gi|42570531|ref|NP_850859.2| SNF1-like protein kinase [Arabidopsis thaliana]
gi|75160582|sp|Q8S9D1.1|PP395_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g21222; AltName: Full=SNF1-like protein kinase AtC401
gi|19071860|dbj|BAB85674.1| SNF1-like protein kinase [Arabidopsis thaliana]
gi|332005563|gb|AED92946.1| SNF1-like protein kinase [Arabidopsis thaliana]
Length = 831
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 92 KADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELF 151
+ L++ L E R E A +FN + +E +KP L Y+ ++ L + K L
Sbjct: 322 RTKLMNGLIERGRPQE---AHSIFNTLIEE-GHKPSLITYTTLVTALTRQKHFHSLLSLI 377
Query: 152 CELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
+++K GL PDT ++ +I + G +D+AM+ +E MK SGC P TF LI+
Sbjct: 378 SKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKI 437
Query: 212 GEEE 215
G+ E
Sbjct: 438 GKLE 441
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
N++D +V + + +E KPD+ +S ++ + EE++ ++ + G+DPD
Sbjct: 580 NDMDGVGEVVDLM-EEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHA 638
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
++ + Y + G +KA + M+ G P+ + +T +I +AGE
Sbjct: 639 FSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGE 686
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ +S + + + AE++ +++K G+ P+ +YT++I + G + KAM+
Sbjct: 634 PDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQV 693
Query: 186 YETM-KASGCTPHKLTFTILIRNLENA 211
Y+ M G +P+ T+ LI A
Sbjct: 694 YKKMCGIVGLSPNLTTYETLIWGFGEA 720
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
+ +++ AL+ F + KE+ P+L +++ +I + E+ +++ G+ PD
Sbjct: 544 EGKMEEALRFF-YRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVV 602
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ ++ + VG + + E Y M G P F+IL + AGE E
Sbjct: 603 TFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPE 653
>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
Length = 593
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 61/105 (58%), Gaps = 2/105 (1%)
Query: 113 KVFNFVR--KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
K F R + + KP+L +Y+ +I + K+ + A +LF EL +GL P+ ++YT +I
Sbjct: 466 KAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTII 525
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ G++D+A+E + M+ GC P ++++ ++IR + +E
Sbjct: 526 NGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDES 570
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+DT+ + + +E LK E+ +PD+ YS ++ ++ A +LF +
Sbjct: 314 LVDTICKEGKVSEAQGVLKTMT----EMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAM 369
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+G PD Y +I Y +V ID+A + + M G TP+ +++ LI L G
Sbjct: 370 ITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGS 428
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 13/124 (10%)
Query: 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKK 156
DT+ L +Q EL P++ S +I +++ +A + ++ K
Sbjct: 115 DTVISLTKQMEL-------------AGLSPNIYTLSILINCFSHLQRVDLAFSVLAKIIK 161
Query: 157 EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
GL P +T +I +VG +AME ++ M A GC P T+T +I L GE
Sbjct: 162 LGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAA 221
Query: 217 VAAV 220
A +
Sbjct: 222 AAGL 225
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L++ + L+R +DLA V + K + +P + ++ +I L K + A A ELF ++
Sbjct: 139 LINCFSHLQR---VDLAFSVLAKIIK-LGLQPTIVTFTTLINWLCKVGKFAQAMELFDDM 194
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
G PD YT +I ++G A + M+ +GC P+ +T++ +I
Sbjct: 195 VARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTII 245
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ +I K K+I A++LF E+ +GL P+ Y +I Q+G + +A
Sbjct: 375 KPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARN 434
Query: 185 TYETMKASGCTPHKLTFTILI 205
++ M +G P+ T++IL+
Sbjct: 435 LFKNMHTNGNLPNLFTYSILL 455
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 60/126 (47%), Gaps = 6/126 (4%)
Query: 80 EEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
E G Q + + + ++D+ + RR NE AL +F++++ + PD+ Y+ +I L
Sbjct: 231 EAGCQPNV--VTYSTIIDSHRKDRRVNE---ALDIFSYMKVK-GISPDIFTYNSLIQGLC 284
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
Q A L E++ + PD + ++ + G + +A +TM G P +
Sbjct: 285 NFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVV 344
Query: 200 TFTILI 205
T++ L+
Sbjct: 345 TYSSLM 350
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/81 (20%), Positives = 42/81 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ ++ ++ + K +++ A+ + + + G++PD Y+ ++ Y + +A +
Sbjct: 306 PDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKL 365
Query: 186 YETMKASGCTPHKLTFTILIR 206
++ M GC P ++ ILI
Sbjct: 366 FDAMITKGCKPDVFSYNILIN 386
Score = 37.0 bits (84), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 44/94 (46%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E +P++ YS +I K++++ A ++F +K +G+ PD Y +I
Sbjct: 230 EEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQW 289
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+A M++ P +TF +L+ + G+
Sbjct: 290 KEASALLNEMRSLNIMPDIVTFNVLVDTICKEGK 323
>gi|302829725|ref|XP_002946429.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
nagariensis]
gi|300268175|gb|EFJ52356.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
nagariensis]
Length = 961
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 63/112 (56%), Gaps = 5/112 (4%)
Query: 99 LTELRRQNELDLALKVFNFVRK-----EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
L EL +Q L A+++F+++R E+ DL Y+ MI G ++Q+ A EL E
Sbjct: 242 LKELAKQGYLKRAVEIFDWLRNLEPSHELSSLCDLYTYTTMISQCGSHQQLRRALELVAE 301
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
++ G+D + Y+ ++ V ++ +D A + Y+ M GC+P+ +T+ ILI
Sbjct: 302 MRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQMLEEGCSPNLVTYNILI 353
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ + ++AL++F+ + KE KP++ ++ +I A ELF +++ +G
Sbjct: 458 ISACEKAGRWEMALELFSKMHKEN-CKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQG 516
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
PD+ Y +I Y + G +A++ +E M+ GC P F L+ L +G
Sbjct: 517 CKPDSITYCGLITAYERGGQWRRALKAFEQMQTQGCHPDAAVFNSLMEVLWQSG 570
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 1/123 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ NELDLA V+ + +E P+L Y+ +I + K Q A ++ L+K+ + +
Sbjct: 323 KANELDLAQDVYKQMLEEG-CSPNLVTYNILIDVYVKRCQWEEAVKVLDTLEKQAIQAEV 381
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
R Y +I + G ++A++ YE M A+G P T+T LI G+ E + RD
Sbjct: 382 RTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALEIFRD 441
Query: 224 CIQ 226
I+
Sbjct: 442 MIR 444
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Query: 104 RQNELDLALKVF-NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
++ +++ AL++F + +R+ + ++ YS +I K + MA ELF ++ KE P+
Sbjct: 428 KKGQVEKALEIFRDMIRRGC--ERNVITYSSLISACEKAGRWEMALELFSKMHKENCKPN 485
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ +I G +KA E +E M+ GC P +T+ LI E G+
Sbjct: 486 VVTFNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQ 536
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A+KV + + K+ + ++ Y+ +I K+ Q A +++ ++ G+ P YT +I
Sbjct: 365 AVKVLDTLEKQA-IQAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALI 423
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
Y + G ++KA+E + M GC + +T++ LI E AG E+
Sbjct: 424 SAYGKKGQVEKALEIFRDMIRRGCERNVITYSSLISACEKAGRWEMA 470
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP + Y+ +I GK Q+ A E+F ++ + G + + Y+ +I + G + A+E
Sbjct: 413 KPSATTYTALISAYGKKGQVEKALEIFRDMIRRGCERNVITYSSLISACEKAGRWEMALE 472
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ M C P+ +TF LI + G E
Sbjct: 473 LFSKMHKENCKPNVVTFNSLIAACSHGGHWE 503
>gi|297839351|ref|XP_002887557.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333398|gb|EFH63816.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 845
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 59/111 (53%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L++ + AL F +++++ +K D Y+ M+ LG+ KQ L E+ K+G P
Sbjct: 323 LKQMDNYANALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINRLLDEMVKDGCKP 382
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+T Y +I Y + +++AM ++ M+ +GC P ++T+ LI AG
Sbjct: 383 NTVTYNRLIHSYGRANYLNEAMNVFKQMQEAGCEPDRVTYCTLIDIHAKAG 433
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP+ Y+ +I G+ + A +F ++++ G +PD Y +I ++ + G +D AM+
Sbjct: 381 KPNTVTYNRLIHSYGRANYLNEAMNVFKQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMD 440
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDC 224
Y+ M+A+G +P T++++I L AG L AA R C
Sbjct: 441 MYQRMQAAGLSPDTFTYSVIINCLGKAG--HLPAAHRLFC 478
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
LD+A+ ++ + + PD YS +I LGK + A LFCE+ +G P+ +
Sbjct: 435 LDIAMDMYQRM-QAAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFN 493
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
MI ++ + + A++ Y M+ +G P K+T++I++ L + G
Sbjct: 494 IMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCG 538
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 7/114 (6%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R N L+ A+ VF + +E +PD Y +I + K + +A +++ ++ GL PDT
Sbjct: 396 RANYLNEAMNVFKQM-QEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAAGLSPDT 454
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI------RNLENA 211
Y+ +I + G + A + M GCTP+ +TF I+I RN E A
Sbjct: 455 FTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETA 508
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
+ ALK++ + + ++PD YS ++ +LG + AE +F E++++ PD VY
Sbjct: 506 ETALKLYRDM-QNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGL 564
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
++ ++ + G ++KA + Y+ M +G P+ T L+
Sbjct: 565 LVDLWGKAGNVEKAWQWYQEMLHAGLRPNVPTCNSLL 601
>gi|357159149|ref|XP_003578355.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Brachypodium distachyon]
Length = 857
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
L++A+ ++ + +EV PD YS M+ LGK Q+A A +LFCE+ + G P+ Y
Sbjct: 450 LEVAMDLYGRM-QEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYN 508
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV----RRD 223
+I + + D ++ Y M+ +G P K+T++I++ L + G + AV RRD
Sbjct: 509 IIIALQAKARNYDNVVKLYRDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRRD 568
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 10/133 (7%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R N L A+KVF + +E Y+PD Y +I + K + +A +L+ +++ GL PDT
Sbjct: 411 RANYLREAVKVFEEM-EEAGYEPDRVTYCTLIDIHAKAGYLEVAMDLYGRMQEVGLSPDT 469
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI------RNLENAGE---E 214
Y+ M+ + G + A + + M +GCTP+ +T+ I+I RN +N + +
Sbjct: 470 FTYSAMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIIIALQAKARNYDNVVKLYRD 529
Query: 215 ELVAAVRRDCIQY 227
VA R D I Y
Sbjct: 530 MQVAGFRPDKITY 542
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 100/239 (41%), Gaps = 53/239 (22%)
Query: 34 KKIQALTVTCGLRDANKKPMW---------RSRVLSSEAIQAV----HAMKLAKSSSKLE 80
+ A TV G D +K P +S + S ++++AV H ++ K E
Sbjct: 260 RNFSAPTVYSGPSDKSKGPSGTIKAHGGGPQSNLRSLKSLRAVEQYYHTLQQMKWGPMTE 319
Query: 81 EGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK 140
S C++ D L+ ++ +AL F++++++ +K D Y+ MI +LG+
Sbjct: 320 HVLDSLHCKI---DAFQANQVLKLLHDHTMALGFFHWLKRQPGFKHDGHTYTTMIGILGQ 376
Query: 141 NKQIAM-----------------------------------AEELFCELKKEGLDPDTRV 165
+Q + A ++F E+++ G +PD
Sbjct: 377 ARQFGIMRNLLHEMNRDRCKPTVVTYNRIIHAYGRANYLREAVKVFEEMEEAGYEPDRVT 436
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDC 224
Y +I ++ + G ++ AM+ Y M+ G +P T++ ++ L G +L AA + C
Sbjct: 437 YCTLIDIHAKAGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGG--QLAAAYKLFC 493
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
LD A VF +R++ + PD +Y ++ + GK + A + + ++GL P+
Sbjct: 554 HLDEAEAVFIEMRRD--WAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNVPTC 611
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
++ +L++ A + M A G P T+T+L+
Sbjct: 612 NSLLSAFLKINRFQDAYSVLQNMLAQGLVPSLQTYTLLL 650
>gi|224138176|ref|XP_002326537.1| predicted protein [Populus trichocarpa]
gi|222833859|gb|EEE72336.1| predicted protein [Populus trichocarpa]
Length = 826
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 1/107 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+QN+L ALK+F + K+ KP++ Y+ +I + + AE+ F E++ GL P+
Sbjct: 567 KQNDLHNALKLFGQMVKQKC-KPNVVTYTSLINGFCRTGDSSRAEKTFEEMRSSGLKPNV 625
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210
YT +IG + + G I KA +E M + C P+ +TF LI L N
Sbjct: 626 VTYTILIGCFCKEGKISKACSFFELMLLNRCIPNDVTFNYLINGLTN 672
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PD YS +I K + A +LF ++ K+ P+ YT +I + + G +A
Sbjct: 551 HSPDEFTYSTIIDGYVKQNDLHNALKLFGQMVKQKCKPNVVTYTSLINGFCRTGDSSRAE 610
Query: 184 ETYETMKASGCTPHKLTFTILI 205
+T+E M++SG P+ +T+TILI
Sbjct: 611 KTFEEMRSSGLKPNVVTYTILI 632
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 52/108 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD++ Y+ +I ++ ++ AEEL K GL P+ YT +I VY + G +A +
Sbjct: 342 EPDITTYNTLISGSCRDGKVHEAEELLEHAIKRGLSPNKLSYTPLIHVYCKQGKCLRAFD 401
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
+ M G + + L+ L AGE ++ VR ++ P+
Sbjct: 402 LFIGMTEKGHPLDLVAYGALVHGLVAAGEVDVALTVRDKMVERGVLPD 449
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 12/127 (9%)
Query: 101 ELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD 160
++ R N L LK+ F+ P Y MI L K + L E+K+ G+D
Sbjct: 255 DVERANGLFKELKMKGFL-------PTTETYGIMINGLCKKCNFKAVDGLLVEMKERGVD 307
Query: 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG-----EEE 215
+ +VY ++ ++ G + +T + +GC P T+ LI G EE
Sbjct: 308 VNVQVYNSIVDAQIKHGCKIEVGKTLRWITENGCEPDITTYNTLISGSCRDGKVHEAEEL 367
Query: 216 LVAAVRR 222
L A++R
Sbjct: 368 LEHAIKR 374
>gi|359482557|ref|XP_002277683.2| PREDICTED: pentatricopeptide repeat-containing protein At5g39710
[Vitis vinifera]
Length = 990
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ R ++ A+K+F + KPD+ ++ +I LGKN I A F E+++EG
Sbjct: 326 ISSFGRAGRVEEAVKIFEELENSS-CKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEG 384
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
L PD Y+ +I + + ++ A ++ M A GC+P+ +T+ IL+ LE +G
Sbjct: 385 LSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSG 438
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 2/133 (1%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + ++D A F +R+E PD+ YS +I GK ++ MA LF E+ EG P
Sbjct: 364 LGKNGDIDEAHMRFKEMREEG-LSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSP 422
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
+ Y ++ + G +A++ Y +K G TP +T+ +L R L++ +++ +
Sbjct: 423 NIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVLER-LQSGSHQKVRVRRK 481
Query: 222 RDCIQYVEFPERF 234
+V P R
Sbjct: 482 NPITGWVVSPLRL 494
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Query: 99 LTELRRQNELDLALKVF-NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
L L + N++D VF + RK +PD Y+ MI M GK + + LF E+ ++
Sbjct: 84 LDALAKDNKVDQVYMVFKDMKRKHC--EPDEYTYTIMIRMTGKIGKADESLTLFQEMTEK 141
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
G P+ Y MI M+DK + + M + C P+ TF++++ L G+
Sbjct: 142 GYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVENNCRPNGFTFSVILNVLVAEGQ 197
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 59/107 (55%), Gaps = 1/107 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R N + A +V+ +R+ YK D+ Y+ ++ L K+ ++ +F ++K++ +PD
Sbjct: 54 RSNNSNKAFEVYVELRRRG-YKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDE 112
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210
YT MI + ++G D+++ ++ M G TP+ + + +I+ L N
Sbjct: 113 YTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALAN 159
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 50/87 (57%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D +Y+ ++ LGK K+ + +L+ ++K++G PD Y +I + + G +++A++ +
Sbjct: 283 DTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIF 342
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGE 213
E ++ S C P ++F LI L G+
Sbjct: 343 EELENSSCKPDIISFNSLINCLGKNGD 369
Score = 43.1 bits (100), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 95 LLDTLTELRRQNEL-DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
+L L +L++ ++L DL K+ K+ PD+ Y+ +I G+ ++ A ++F E
Sbjct: 290 VLSALGKLKKTSDLHDLYEKM-----KQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEE 344
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
L+ PD + +I + G ID+A ++ M+ G +P +T++ LI
Sbjct: 345 LENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLI 396
>gi|413926076|gb|AFW66008.1| hypothetical protein ZEAMMB73_411794 [Zea mays]
Length = 633
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 52/89 (58%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ MI LGKN + A LF +++++G DPD Y+ +I + + +D A
Sbjct: 492 KPDVVTYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECFGKSNKVDMACS 551
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
++ M A GC P+ +T+ IL+ LE G+
Sbjct: 552 LFDEMVAQGCIPNIVTYNILLDCLERRGK 580
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ +Y+ + LGK KQ++ L+ ++ G+ PD Y MI + +VG++DKA E +
Sbjct: 424 DVGMYNMIFSALGKLKQVSFMSSLYDTMRANGVVPDVFTYNIMISSFGRVGLVDKASELF 483
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGE 213
E M+ C P +T+ +I L G+
Sbjct: 484 EEMEDGSCKPDVVTYNSMINCLGKNGD 510
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 1/143 (0%)
Query: 64 IQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVW 123
I + + L +S+L E + C+ + L + +LD A +F + +E
Sbjct: 467 ISSFGRVGLVDKASELFEEMEDGSCKPDVVTYNSMINCLGKNGDLDEAHMLFKDM-QEKG 525
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y PD+ YS +I GK+ ++ MA LF E+ +G P+ Y ++ + G +A
Sbjct: 526 YDPDVFTYSILIECFGKSNKVDMACSLFDEMVAQGCIPNIVTYNILLDCLERRGKTTEAH 585
Query: 184 ETYETMKASGCTPHKLTFTILIR 206
+ YET+K G TP +T++IL R
Sbjct: 586 KFYETLKQQGLTPDSITYSILER 608
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 43/74 (58%)
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
+++++ E++ +++++G D Y ++ + GM+D+A + +E MK + C P
Sbjct: 195 RSREVWKGFEVYEKMRRKGYKLDIFAYNMLLNALAKAGMVDQAYQVFEDMKQNYCDPDAY 254
Query: 200 TFTILIRNLENAGE 213
T+TILIR AG+
Sbjct: 255 TYTILIRMSGKAGK 268
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI G+ + A ELF E++ PD Y MI + G +D+A
Sbjct: 458 PDVFTYNIMISSFGRVGLVDKASELFEEMEDGSCKPDVVTYNSMINCLGKNGDLDEAHML 517
Query: 186 YETMKASGCTPHKLTFTILI 205
++ M+ G P T++ILI
Sbjct: 518 FKDMQEKGYDPDVFTYSILI 537
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L + +D A +VF + K+ + PD Y+ +I M GK + L E+ EG
Sbjct: 225 LNALAKAGMVDQAYQVFEDM-KQNYCDPDAYTYTILIRMSGKAGKTTKFVSLLEEMVSEG 283
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ Y +I + M+D+A+ M S C P++ T++I++ L G+
Sbjct: 284 CVLNLIAYNTVIEALGKNKMVDEAIFMLSKMIESDCRPNQFTYSIMLDVLSTGGQ 338
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R E+ +V+ +R++ YK D+ Y+ ++ L K + A ++F ++K+ DPD
Sbjct: 195 RSREVWKGFEVYEKMRRK-GYKLDIFAYNMLLNALAKAGMVDQAYQVFEDMKQNYCDPDA 253
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
YT +I + + G K + E M + GC + + + +I L
Sbjct: 254 YTYTILIRMSGKAGKTTKFVSLLEEMVSEGCVLNLIAYNTVIEAL 298
>gi|357448559|ref|XP_003594555.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483603|gb|AES64806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ R +D A+K+F + +PD+ Y+ +I LGKN + A F E++++G
Sbjct: 472 ISSYGRAGRVDSAVKIFEELENSNC-QPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKG 530
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
L+PD Y+ +I + + ++ A ++ M A GC+P+ +T+ IL+ LE +G
Sbjct: 531 LNPDVVTYSTLIECFGKTDKVEMACSLFDEMIAEGCSPNLVTYNILLDCLERSG 584
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D +Y+ + LG+ KQ++ +L+ ++K++G PD Y +I Y + G +D A++ +
Sbjct: 429 DTIMYNTVFTALGRLKQVSHIHDLYEKMKQDGPPPDIFTYNILISSYGRAGRVDSAVKIF 488
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGE 213
E ++ S C P +++ LI L G+
Sbjct: 489 EELENSNCQPDVISYNSLINCLGKNGD 515
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E PD+ YS +I GK ++ MA LF E+ EG P+ Y ++ + G
Sbjct: 527 QEKGLNPDVVTYSTLIECFGKTDKVEMACSLFDEMIAEGCSPNLVTYNILLDCLERSGRT 586
Query: 180 DKAMETYETMKASGCTPHKLTFTILIR 206
+A++ Y +K G TP +T+ +L R
Sbjct: 587 AEAVDLYAKLKQQGLTPDSITYAVLER 613
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L + ++D A KVF +++ +PD Y+ MI M GK + + LF + ++G
Sbjct: 230 LDALAKDQKVDKAYKVFEDMKRR-HCEPDTFTYTIMIRMTGKAGKTDESLALFQAMLEKG 288
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ Y MI + M DKA+ + M +GC P++ T+++L+ L G+
Sbjct: 289 FTLNLIAYNTMIEALAKGRMADKAVLLFSKMVENGCQPNEFTYSVLLNVLVAEGQ 343
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I G+ ++ A ++F EL+ PD Y +I + G +D+A
Sbjct: 463 PDIFTYNILISSYGRAGRVDSAVKIFEELENSNCQPDVISYNSLINCLGKNGDVDEAHMR 522
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
++ M+ G P +T++ LI + E+ ++
Sbjct: 523 FKEMQEKGLNPDVVTYSTLIECFGKTDKVEMACSL 557
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 47/85 (55%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y D+ ++ ++ L K++++ A ++F ++K+ +PDT YT MI + + G D+++
Sbjct: 219 YSLDIFAFNMLLDALAKDQKVDKAYKVFEDMKRRHCEPDTFTYTIMIRMTGKAGKTDESL 278
Query: 184 ETYETMKASGCTPHKLTFTILIRNL 208
++ M G T + + + +I L
Sbjct: 279 ALFQAMLEKGFTLNLIAYNTMIEAL 303
Score = 37.0 bits (84), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
K D Y M+ L + +IA A +L ++ + DT +Y + ++ + +
Sbjct: 392 KGDKDAYMSMLESLCSSGKIAEAIDLLNRFHEKCITTDTIMYNTVFTALGRLKQVSHIHD 451
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
YE MK G P T+ ILI + AG
Sbjct: 452 LYEKMKQDGPPPDIFTYNILISSYGRAG 479
>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
Length = 577
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 67/128 (52%), Gaps = 8/128 (6%)
Query: 95 LLDTLTELRRQNE-LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
LL+ L ++ R E +DL K+ + PD+ Y+ +I LGK K+ A +LF E
Sbjct: 27 LLNGLCKMGRLEEAIDLLRKIVDN-----GCTPDVVTYTSLIDGLGKEKRSFEAYKLFKE 81
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ GL DT YT +I LQ G I +A Y+TM + GC P +T + +I L AG
Sbjct: 82 MALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAG- 140
Query: 214 EELVAAVR 221
+ AAVR
Sbjct: 141 -RIGAAVR 147
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 67/128 (52%), Gaps = 8/128 (6%)
Query: 95 LLDTLTELRRQNE-LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
LL+ L ++ R E +DL K+ + PD+ Y+ +I LGK K+ A +LF E
Sbjct: 308 LLNGLCKMGRLEEAIDLLRKIVDN-----GCTPDVVTYTSLIDGLGKEKRSFEAYKLFKE 362
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ GL DT YT +I LQ G I +A Y+TM + GC P +T + +I L AG
Sbjct: 363 MALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAG- 421
Query: 214 EELVAAVR 221
+ AAVR
Sbjct: 422 -RIGAAVR 428
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ S MI L K +I A +F ++ GL P+ VY+ +I + +D A+E
Sbjct: 405 PDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEM 464
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
MK + CTP +T+ ILI L +G+ E
Sbjct: 465 LAQMKKAFCTPDTITYNILIDGLCKSGDVE 494
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ S MI L K +I A +F ++ GL P+ VY+ +I + +D A+E
Sbjct: 124 PDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEM 183
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
MK + CTP +T+ +LI L +G+ E
Sbjct: 184 LAQMKKAFCTPDTITYNVLIDGLCKSGDVE 213
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + + A+++F + P+ +YS +I L K +++ A E+ ++KK P
Sbjct: 417 LSKAGRIGAAVRIFKSMEAR-GLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTP 475
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
DT Y +I + G ++ A ++ M +GC P T+ ILI AG + V
Sbjct: 476 DTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVF 535
Query: 222 RD 223
D
Sbjct: 536 DD 537
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + + A+++F + P+ +YS +I L K +++ A E+ ++KK P
Sbjct: 136 LSKAGRIGAAVRIFKSMEAR-GLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTP 194
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
DT Y +I + G ++ A ++ M +GC P T+ ILI AG +
Sbjct: 195 DTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTD 248
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + ++D AL++ ++K + PD Y+ +I L K+ + A F E+ + G P
Sbjct: 452 LCKARKMDCALEMLAQMKK-AFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKP 510
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
D Y +I + + G D A ++ M +S C+ + +T+ LI L
Sbjct: 511 DVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGL 557
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ Y+ ++ L KNK+I A L ++ G P Y ++ ++G +++A++
Sbjct: 266 DIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLL 325
Query: 187 ETMKASGCTPHKLTFTILIRNL 208
+ +GCTP +T+T LI L
Sbjct: 326 RKIVDNGCTPDVVTYTSLIDGL 347
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + ++D AL++ ++K + PD Y+ +I L K+ + A F E+ + G P
Sbjct: 171 LCKARKMDCALEMLAQMKK-AFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKP 229
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETY-ETMKASGCTPHKLTFTILIRNL-ENAGEEELVA 218
D Y +I + + G D A + + +GCT T+T ++ L +N EE VA
Sbjct: 230 DVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVA 288
>gi|297737369|emb|CBI26570.3| unnamed protein product [Vitis vinifera]
Length = 1042
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 9/129 (6%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT- 163
Q+ AL+V+ ++ WY P+ + + ++ +LGK Q A+A E+F + E +T
Sbjct: 140 QSSWQRALEVYEWLNLRHWYSPNARMLATILSVLGKANQEALAVEIFA--RAEAASGNTV 197
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE------ELV 217
+VY M+GVY + G K E + M++ GC P ++F LI +G EL+
Sbjct: 198 QVYNAMMGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELL 257
Query: 218 AAVRRDCIQ 226
VRR IQ
Sbjct: 258 NEVRRSGIQ 266
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ R++ L+ A+KV+N + +PDL Y+ MI + G+ A LF +L+ +G
Sbjct: 276 ISACSRESNLEEAVKVYNDMVAHR-CQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKG 334
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
PD Y ++ + + G +DK E E M G ++T+ +I G+ +L
Sbjct: 335 FLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAF 394
Query: 219 AVRRD 223
+ D
Sbjct: 395 QLYSD 399
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PD Y+ ++ + + +E+ ++ K G D Y +I +Y + G D A
Sbjct: 335 FLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAF 394
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENA 211
+ Y MK SG +P +T+T+LI +L A
Sbjct: 395 QLYSDMKLSGRSPDAVTYTVLIDSLGKA 422
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 84/181 (46%), Gaps = 10/181 (5%)
Query: 55 RSRVLSSEAIQAVHAMK--LAKSS--SKLEEGFQSRICRLLKADLL--DTLTELRRQNEL 108
R+ S +Q +AM A++ +K++E R + DL+ +TL R ++
Sbjct: 188 RAEAASGNTVQVYNAMMGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGT 247
Query: 109 ---DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
+LA+++ N VR+ +PD+ Y+ +I + + A +++ ++ PD
Sbjct: 248 MVTNLAIELLNEVRRSG-IQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWT 306
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCI 225
Y MI VY + GM +A ++ +++ G P +T+ L+ G + V + D +
Sbjct: 307 YNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMV 366
Query: 226 Q 226
+
Sbjct: 367 K 367
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
++ + DLA ++++ + K PD Y+ +I LGK I A E+ E+ + P
Sbjct: 386 KRGQHDLAFQLYSDM-KLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTL 444
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
R ++ +I Y + G +A ET++ M SG P L +++++ L E + ++
Sbjct: 445 RTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQE 504
Query: 224 CIQYVEFPERFLEEV 238
+ + P+ L EV
Sbjct: 505 MVLHSFKPDHALYEV 519
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP L +S +I K + AEE F + + G+ PD Y+ M+ + L+ KAM+
Sbjct: 441 KPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMK 500
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
Y+ M P + +++R L EE V V +D
Sbjct: 501 LYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKD 539
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ D Y+ +I M GK Q +A +L+ ++K G PD YT +I + MI +A
Sbjct: 370 FGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAA 429
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGE 213
E M + P TF+ LI AG+
Sbjct: 430 EVMSEMLNARVKPTLRTFSALICGYAKAGK 459
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 1/132 (0%)
Query: 75 SSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDM 134
+ +L EG S+ C+L ++ + R A K+ V KE +P ++ +
Sbjct: 592 GTEELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLG-VMKEAGVEPTIATMHLL 650
Query: 135 ILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGC 194
++ + Q AE++ LK EGL T Y+ +I YL+ G + A++ MK G
Sbjct: 651 MVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGL 710
Query: 195 TPHKLTFTILIR 206
P +T +R
Sbjct: 711 EPDHRIWTCFVR 722
>gi|297808179|ref|XP_002871973.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
gi|297317810|gb|EFH48232.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
Length = 831
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 92 KADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELF 151
+ L++ L E R E A +FN + +E +KP + Y+ ++ L + K L
Sbjct: 322 RTKLMNGLIERGRPQE---AHSIFNTLIEE-GHKPSIITYTTLVTALTRQKHFHSLLSLI 377
Query: 152 CELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
+++K GL PDT ++ +I + G +D+AM+ +E MK SGC P TF LI+
Sbjct: 378 SKVQKNGLRPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKI 437
Query: 212 GEEE 215
G+ E
Sbjct: 438 GKLE 441
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ +S + + + AE++ +++K G+ P+ +YT++I + G + KAM+
Sbjct: 634 PDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQV 693
Query: 186 YETMKAS-GCTPHKLTFTILIRNLENA 211
Y M+ S G +P+ T+ LI A
Sbjct: 694 YNKMRGSVGLSPNLTTYETLIWGFGEA 720
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
N++D +V + + +E KPD+ +S ++ + EE++ ++ + G+DPD
Sbjct: 580 NDMDGVGEVVDLM-EEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYRDMLEGGIDPDIHA 638
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
++ + Y + G +KA + M+ G P+ + +T +I +AGE
Sbjct: 639 FSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGE 686
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
+ +++ AL+ F + KE+ P+L +++ +I + E+ +++ G+ PD
Sbjct: 544 EGKMEEALRFF-YRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVV 602
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ ++ + VG + + E Y M G P F+IL + AGE E
Sbjct: 603 TFSTLMNAWSSVGDMKRCEEIYRDMLEGGIDPDIHAFSILAKGYARAGEPE 653
>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g07290, mitochondrial; Flags: Precursor
gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 880
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 63/121 (52%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
ALKVF+ + KEV P+ YS +I L + ++ A L ++ ++G P TR YT +I
Sbjct: 249 ALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLI 308
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEF 230
G+IDKA ++ M GC P+ T+T+LI L G+ E V R ++ F
Sbjct: 309 KALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIF 368
Query: 231 P 231
P
Sbjct: 369 P 369
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%)
Query: 137 MLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP 196
ML K ++ + ++ K GL P YT ++ ++ G I + E MK SGC P
Sbjct: 555 MLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLP 614
Query: 197 HKLTFTILIRNLENAGEEE 215
+ +TI+I L G E
Sbjct: 615 NVYPYTIIINGLCQFGRVE 633
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+ +I L + ++ AE+L ++ G+ P+ YT M+ Y+ G +D+A+ET
Sbjct: 614 PNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALET 673
Query: 186 YETMKASG 193
M G
Sbjct: 674 VRAMVERG 681
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 113 KVFNFVRKEV--WYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
K FN + + KP++ Y+ +I L ++ +I A + ++ K+ + P Y +I
Sbjct: 319 KAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALI 378
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
Y + G + A E M+ C P+ TF L+ L G+
Sbjct: 379 NGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGK 421
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + Y+ +I K+ ++ A EL ++K P+ R + E++ +VG KA+
Sbjct: 369 PSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHL 428
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ M +G +P +++ +LI L G
Sbjct: 429 LKRMLDNGLSPDIVSYNVLIDGLCREG 455
>gi|359490016|ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Vitis vinifera]
Length = 1442
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 9/129 (6%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT- 163
Q+ AL+V+ ++ WY P+ + + ++ +LGK Q A+A E+F + E +T
Sbjct: 165 QSSWQRALEVYEWLNLRHWYSPNARMLATILSVLGKANQEALAVEIFA--RAEAASGNTV 222
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE------ELV 217
+VY M+GVY + G K E + M++ GC P ++F LI +G EL+
Sbjct: 223 QVYNAMMGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELL 282
Query: 218 AAVRRDCIQ 226
VRR IQ
Sbjct: 283 NEVRRSGIQ 291
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R++ L+ A+KV+N + +PDL Y+ MI + G+ A LF +L+ +G PD
Sbjct: 306 RESNLEEAVKVYNDMVAHR-CQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDA 364
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
Y ++ + + G +DK E E M G ++T+ +I G+ +L + D
Sbjct: 365 VTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSD 424
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PD Y+ ++ + + +E+ ++ K G D Y +I +Y + G D A
Sbjct: 360 FLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAF 419
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENA 211
+ Y MK SG +P +T+T+LI +L A
Sbjct: 420 QLYSDMKLSGRSPDAVTYTVLIDSLGKA 447
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K Y P + LY MI +L K K++ E + E++ PD ++ ++ +Y +G
Sbjct: 879 KAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVARFKPDLSIWNSVLKLYTGIGDF 938
Query: 180 DKAMETYETMKASGCTPHKLTFTILI 205
K + Y+ ++ +G P + T+ LI
Sbjct: 939 KKTGQVYQLIQEAGLKPDEDTYNTLI 964
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 50/93 (53%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E KPD Y+ +ILM ++++ L E+++ GL+P Y +I + ++ M+
Sbjct: 949 QEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMV 1008
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
++A E +E + + C + + I+++ N+G
Sbjct: 1009 EQAEELFEGLLSKECKLDRSFYHIMMKMFRNSG 1041
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 84/181 (46%), Gaps = 10/181 (5%)
Query: 55 RSRVLSSEAIQAVHAMK--LAKSS--SKLEEGFQSRICRLLKADLL--DTLTELRRQNEL 108
R+ S +Q +AM A++ +K++E R + DL+ +TL R ++
Sbjct: 213 RAEAASGNTVQVYNAMMGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGT 272
Query: 109 ---DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
+LA+++ N VR+ +PD+ Y+ +I + + A +++ ++ PD
Sbjct: 273 MVTNLAIELLNEVRRS-GIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWT 331
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCI 225
Y MI VY + GM +A ++ +++ G P +T+ L+ G + V + D +
Sbjct: 332 YNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMV 391
Query: 226 Q 226
+
Sbjct: 392 K 392
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
++ + DLA ++++ + K PD Y+ +I LGK I A E+ E+ + P
Sbjct: 411 KRGQHDLAFQLYSDM-KLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTL 469
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
R ++ +I Y + G +A ET++ M SG P L +++++ L E + ++
Sbjct: 470 RTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQE 529
Query: 224 CIQYVEFPERFLEEV 238
+ + P+ L EV
Sbjct: 530 MVLHSFKPDHALYEV 544
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP L +S +I K + AEE F + + G+ PD Y+ M+ + L+ KAM+
Sbjct: 466 KPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMK 525
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
Y+ M P + +++R L EE V V +D
Sbjct: 526 LYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKD 564
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ D Y+ +I M GK Q +A +L+ ++K G PD YT +I + MI +A
Sbjct: 395 FGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAA 454
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGE 213
E M + P TF+ LI AG+
Sbjct: 455 EVMSEMLNARVKPTLRTFSALICGYAKAGK 484
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 1/143 (0%)
Query: 64 IQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVW 123
I A +++ + + +L EG S+ C+L ++ + R A K+ V KE
Sbjct: 999 ISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLG-VMKEAG 1057
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+P ++ +++ + Q AE++ LK EGL T Y+ +I YL+ G + A+
Sbjct: 1058 VEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVAI 1117
Query: 184 ETYETMKASGCTPHKLTFTILIR 206
+ MK G P +T +R
Sbjct: 1118 QKLMEMKKDGLEPDHRIWTCFVR 1140
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+ V +P L Y +I GK + + AEELF L + D Y M+ ++ G
Sbjct: 984 RRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRNSGNH 1043
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
KA + MK +G P T +L+ + +G+ E
Sbjct: 1044 SKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPE 1079
>gi|356558071|ref|XP_003547332.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Glycine max]
Length = 647
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ R +D+A+K F + KPD+ Y+ +I LGKN + A F E++++G
Sbjct: 480 ISSFGRAGRVDIAVKFFEELENSDC-KPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKG 538
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
L+PD Y+ +I + + ++ A ++ M A CTP+ +T+ IL+ LE +G
Sbjct: 539 LNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEECTPNLITYNILLDCLERSG 592
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D +Y+ + LG+ KQI+ +L+ ++K++G PD Y +I + + G +D A++ +
Sbjct: 437 DTIMYNTVFTALGRLKQISHIHDLYEKMKQDGPPPDIFTYNILISSFGRAGRVDIAVKFF 496
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGE 213
E ++ S C P +++ LI L G+
Sbjct: 497 EELENSDCKPDVISYNSLINCLGKNGD 523
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E PD+ YS +I GK ++ MA LF E+ E P+ Y ++ + G
Sbjct: 535 QEKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEECTPNLITYNILLDCLERSGRT 594
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
+A++ Y +K G TP +T+ +L R L++ G +L
Sbjct: 595 AEAVDLYAKLKQQGLTPDSITYAVLER-LQSGGHGKL 630
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 5/119 (4%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LLD L ++E + KVF +++ +PD+ Y+ MI M GK+ + A LF +
Sbjct: 238 LLDALA----KDEKVCSYKVFEDMKRR-HCEPDVFTYTIMIRMTGKSSKTDEALALFQAM 292
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+G P+ Y MI + M+DKA+ + M + P++ T+++++ L G+
Sbjct: 293 LAKGCTPNLIGYNTMIEALAKGRMVDKAVLLFSKMVENDIQPNEFTYSVILNLLVAEGK 351
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I G+ ++ +A + F EL+ PD Y +I + G +D+A
Sbjct: 471 PDIFTYNILISSFGRAGRVDIAVKFFEELENSDCKPDVISYNSLINCLGKNGDVDEAHMR 530
Query: 186 YETMKASGCTPHKLTFTILI 205
++ M+ G P +T++ LI
Sbjct: 531 FKEMQEKGLNPDVVTYSTLI 550
>gi|242058841|ref|XP_002458566.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
gi|241930541|gb|EES03686.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
Length = 796
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 13/159 (8%)
Query: 76 SSKLEEGFQSR---ICRLLKADL------LDTLTELRRQNELDLALKVFNFVRKEVWYKP 126
+SK++E Q R I R K DL L T L + E+ L + + ++ E KP
Sbjct: 505 ASKMDEAIQLRDDMIKRGFKPDLFTFNIFLHTYCNLGKVEEI---LHLLDQMKSE-GLKP 560
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ Y +I K K + A E EL K GL P+ +Y +IG Y + G I A+
Sbjct: 561 DIVTYGTIIDGYCKAKDMHKANEYLTELMKNGLRPNAVIYNALIGGYGRNGNISDAIGIL 620
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCI 225
+TMK +G P +T+ L+ + +AG E V AV CI
Sbjct: 621 DTMKYNGIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQCI 659
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
+LD+A KVF +R PD+ Y+ MI L + +I A + EL++ G+ P
Sbjct: 189 GQLDVARKVFGEMRDGKTVAPDVHTYTAMIKALCRAGEIDAAFAMLAELRRSGIQPTVVT 248
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
Y ++ + G +++A M P +TF ILI L + V AV
Sbjct: 249 YNVLMDALCKSGRVEEAFRLKGRMVEGRVRPSIVTFGILISGLARGQQFGEVGAV 303
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 46/91 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P + + +I L + +Q + E++ G+ P+ +Y EMIG + + G +A++
Sbjct: 278 RPSIVTFGILISGLARGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHCRKGHCSEALK 337
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ M + G +T+ ++ + L GE E
Sbjct: 338 LFDEMVSKGIKQTVVTYNLIAKALCKEGEME 368
>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 634
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 57/96 (59%), Gaps = 2/96 (2%)
Query: 113 KVFNFVRKEV--WYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
K +N +R+ + + PD S YS +I L ++ A +LF E+K+ G+ PD YT ++
Sbjct: 105 KAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLL 164
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
+ +VG+I++A ++ M+ GC P+ +T+T LI
Sbjct: 165 DRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIH 200
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ ++ K I A F E++++G P+ YT +I YL+ + +A E
Sbjct: 155 PDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEI 214
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+E M ++GC P+ +T+T LI AGE E
Sbjct: 215 FEMMLSNGCVPNIVTYTALIDGHCKAGETE 244
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 66/120 (55%), Gaps = 4/120 (3%)
Query: 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
+ L+D L + +R LDLALKV + + P++ +Y++M+ L K + A L
Sbjct: 353 SSLIDKLFKDKR---LDLALKVLTKMLENSC-APNVVIYTEMVDGLCKVGKTDEAYRLML 408
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
++++G P+ YT MI + + G +D+ +E + M + GC P+ +T+ +LI + AG
Sbjct: 409 MMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAG 468
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ YS +I L K+K++ +A ++ ++ + P+ +YTEM+ +VG D+A
Sbjct: 347 PNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRL 406
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
M+ GC P+ +T+T +I AG
Sbjct: 407 MLMMEEKGCYPNVVTYTAMIDGFGKAG 433
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
++D+ ++ + KE P++ Y ++ L K ++ A +L + EG +P+ +Y
Sbjct: 262 DVDIYFRIVDSELKE----PNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIY 317
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+I + +VG +D+A E + M GC+P+ T++ LI L
Sbjct: 318 DALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKL 359
>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
Length = 833
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 7/154 (4%)
Query: 78 KLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILM 137
+L G + +C L L RR ++L A +VF + KE +P+ YS +I
Sbjct: 156 RLGFGLDTHVCTSL------VLANCRR-DDLGEAFRVFEKMSKEESCRPNSVTYSILIHG 208
Query: 138 LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH 197
L + ++ A +L E+ ++G P TR YT +I +GM DKAM+ + M C P+
Sbjct: 209 LCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPN 268
Query: 198 KLTFTILIRNLENAGEEELVAAVRRDCIQYVEFP 231
T+TILI L G+ E V R +++ P
Sbjct: 269 VHTYTILIDRLCREGKIEEANGVFRKMLKHGLCP 302
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R E L+LK+ + K+ P++ Y+ +I L N ++ AE + + G+ P+
Sbjct: 526 RAGETALSLKMLERM-KQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNH 584
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y ++ +++ G +D+A + TM +GC P+ ++ L+
Sbjct: 585 FTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALL 626
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 138 LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH 197
LGK+ ++ A + ++ K GL P +T +I + + G +++ E MK +GC+P+
Sbjct: 489 LGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPN 548
Query: 198 KLTFTILIRNLENAGEEE 215
T+TI+I L N G E
Sbjct: 549 VYTYTIIINGLCNNGRVE 566
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ ++ K Q+ MA +F + GL+PD +T +I ++G +++A
Sbjct: 372 PDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGI 431
Query: 186 YETMKASGCTPHKLTFTILI 205
+M G + ++TFT LI
Sbjct: 432 LGSMVKKGISLDEVTFTALI 451
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM- 189
Y ++ L KN + AE C++ + G DT V T ++ + + +A +E M
Sbjct: 131 YRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMS 190
Query: 190 KASGCTPHKLTFTILIRNLENAGEEE 215
K C P+ +T++ILI L AG E
Sbjct: 191 KEESCRPNSVTYSILIHGLCEAGRLE 216
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ Y++++ L + + A L + GL PD Y ++ + + G ++ A
Sbjct: 336 KPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFN 395
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ +M ++G P TFT LI L G E
Sbjct: 396 IFNSMNSAGLEPDGFTFTALIDGLCKLGRLE 426
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+ +I L + +I A +F ++ K GL P + +I Y + G + A +
Sbjct: 267 PNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQL 326
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
M+ C P+ T+ L+ L
Sbjct: 327 LSVMEKGNCKPNIRTYNELMEGL 349
>gi|108707772|gb|ABF95567.1| PPR2, putative, expressed [Oryza sativa Japonica Group]
Length = 443
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 63/112 (56%), Gaps = 1/112 (0%)
Query: 113 KVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGV 172
+VF ++++ +Y P + ++L+LG++ Q + A LF E+ ++G P +YT +I
Sbjct: 74 QVFQMLKEQPFYHPKEGTFMKLLLLLGRSGQPSRARYLFDEMLQQGCQPTPELYTALIAA 133
Query: 173 YLQVGMIDKAMETYETMKASG-CTPHKLTFTILIRNLENAGEEELVAAVRRD 223
Y + G++D A MKAS C P T++ +I+ +A ++V A+ +D
Sbjct: 134 YCRNGLLDDAFRLLADMKASPVCQPDVYTYSTIIKACVDASRFDIVDAMYKD 185
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L+ R LD KV + + KPD+ + ++ + G QI E+ + + + G
Sbjct: 202 LSGYGRAGRLDDMEKVLSAMLDSTTSKPDVWTMNIILSLFGNRGQIESMEKWYEKFRGYG 261
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
++P+TR +IG Y + M DK E M+ TF +I +AG+
Sbjct: 262 IEPETRTLNILIGAYGKKRMYDKMSAVMEYMRKLAFPWTTATFNNVIEAFADAGD 316
>gi|357502007|ref|XP_003621292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124360248|gb|ABN08261.1| Pentatricopeptide repeat [Medicago truncatula]
gi|355496307|gb|AES77510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 738
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 61/123 (49%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PD Y+ MI K + A ELF ++K+ G+ PD YT MI Y ++ + +A
Sbjct: 612 FTPDAVTYTIMINGYCKTNCLPEAHELFKDMKERGITPDAVTYTIMINGYCKMNCLREAH 671
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVYQKHR 243
E ++ MK G P + +T++I+ L N+G E+ + + I P L+ QK
Sbjct: 672 ELFKDMKERGIKPDVIAYTVIIKGLLNSGHTEIAFQLYNEMIDMGMTPGATLKRCIQKAN 731
Query: 244 KTQ 246
K Q
Sbjct: 732 KRQ 734
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E+ KP +YS + L N + A LF G PD YT MI Y + +
Sbjct: 574 EMNMKPSKVMYSKIFTALCCNGNMEGAHTLFNLFIHTGFTPDAVTYTIMINGYCKTNCLP 633
Query: 181 KAMETYETMKASGCTPHKLTFTILIR 206
+A E ++ MK G TP +T+TI+I
Sbjct: 634 EAHELFKDMKERGITPDAVTYTIMIN 659
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ +I ++ AE +F E++K+GL PD VY ++ Y DKA+ Y++M
Sbjct: 298 YTAVIRGFCNETKLDEAESVFLEMEKQGLVPDVYVYCALVHGYCNSRNFDKALAVYKSMI 357
Query: 191 ASGCTPHKLTFTILIRNLENAG 212
+ G + + F+ ++ L+ G
Sbjct: 358 SRGIKTNCVIFSCILHCLDEMG 379
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE PD Y+ MI K + A ELF ++K+ G+ PD YT +I L G
Sbjct: 643 KERGITPDAVTYTIMINGYCKMNCLREAHELFKDMKERGIKPDVIAYTVIIKGLLNSGHT 702
Query: 180 DKAMETYETMKASGCTP 196
+ A + Y M G TP
Sbjct: 703 EIAFQLYNEMIDMGMTP 719
Score = 36.6 bits (83), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 147 AEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
A+ LF E+++ G PD Y + + + +AM+ M++ G P+ T I+I
Sbjct: 454 AQSLFKEMEERGFKPDVVAYNVLAAGFFRNRTDFEAMDLLNYMESQGVEPNSTTHKIIIE 513
Query: 207 NLENAGEEE 215
L +AG+ E
Sbjct: 514 GLCSAGKVE 522
>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
Length = 883
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 7/154 (4%)
Query: 78 KLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILM 137
+L G + +C L L RR ++L A +VF + KE +P+ YS +I
Sbjct: 222 RLGFGLDTHVCTSL------VLANCRR-DDLGEAFRVFEKMSKEENCRPNSVTYSILIHG 274
Query: 138 LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH 197
L + ++ A +L E+ ++G P TR YT +I +GM DKAM+ + M C P+
Sbjct: 275 LCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPN 334
Query: 198 KLTFTILIRNLENAGEEELVAAVRRDCIQYVEFP 231
T+TILI L G+ E V R +++ P
Sbjct: 335 VHTYTILIDRLCREGKIEEANGVFRKMLKHGLCP 368
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R E L+LK+ + K+ P++ Y+ +I L N ++ AE + + G+ P+
Sbjct: 592 RAGETALSLKMLERM-KQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNH 650
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y ++ +++ G +D+A + TM +GC P+ ++ L+
Sbjct: 651 FTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALL 692
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 138 LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH 197
LGK+ ++ A + ++ K GL P +T +I + + G +++ E MK +GC+P+
Sbjct: 555 LGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPN 614
Query: 198 KLTFTILIRNLENAGEEE 215
T+TI+I L N G E
Sbjct: 615 VYTYTIIINGLCNNGRVE 632
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ ++ K Q+ MA +F + GL+PD +T +I ++G +++A
Sbjct: 438 PDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGI 497
Query: 186 YETMKASGCTPHKLTFTILI 205
+M G + ++TFT LI
Sbjct: 498 LGSMVKKGISLDEVTFTALI 517
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM- 189
Y ++ L KN + AE C++ + G DT V T ++ + + +A +E M
Sbjct: 197 YRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMS 256
Query: 190 KASGCTPHKLTFTILIRNLENAGEEE 215
K C P+ +T++ILI L AG E
Sbjct: 257 KEENCRPNSVTYSILIHGLCEAGRLE 282
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ Y++++ L + + A L + GL PD Y ++ + + G ++ A
Sbjct: 402 KPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFN 461
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ +M ++G P TFT LI L G E
Sbjct: 462 IFNSMNSAGLEPDGFTFTALIDGLCKLGRLE 492
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+ +I L + +I A +F ++ K GL P + +I Y + G + A +
Sbjct: 333 PNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQL 392
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
M+ C P+ T+ L+ L
Sbjct: 393 LSVMEKGNCKPNIRTYNELMEGL 415
>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
mitochondrial [Vitis vinifera]
Length = 876
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 7/154 (4%)
Query: 78 KLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILM 137
+L G + +C L L RR ++L A +VF + KE +P+ YS +I
Sbjct: 199 RLGFGLDTHVCTSL------VLANCRR-DDLGEAFRVFEKMSKEENCRPNSVTYSILIHG 251
Query: 138 LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH 197
L + ++ A +L E+ ++G P TR YT +I +GM DKAM+ + M C P+
Sbjct: 252 LCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPN 311
Query: 198 KLTFTILIRNLENAGEEELVAAVRRDCIQYVEFP 231
T+TILI L G+ E V R +++ P
Sbjct: 312 VHTYTILIDRLCREGKIEEANGVFRKMLKHGLCP 345
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R E L+LK+ + K+ P++ Y+ +I L N ++ AE + + G+ P+
Sbjct: 569 RAGETALSLKMLERM-KQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNH 627
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y ++ +++ G +D+A + TM +GC P+ ++ L+
Sbjct: 628 FTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALL 669
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 138 LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH 197
LGK+ ++ A + ++ K GL P +T +I + + G +++ E MK +GC+P+
Sbjct: 532 LGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPN 591
Query: 198 KLTFTILIRNLENAGEEE 215
T+TI+I L N G E
Sbjct: 592 VYTYTIIINGLCNNGRVE 609
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ ++ K Q+ MA +F + GL+PD +T +I ++G +++A
Sbjct: 415 PDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGI 474
Query: 186 YETMKASGCTPHKLTFTILI 205
+M G + ++TFT LI
Sbjct: 475 LGSMVKKGISLDEVTFTALI 494
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM- 189
Y ++ L KN + AE C++ + G DT V T ++ + + +A +E M
Sbjct: 174 YRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMS 233
Query: 190 KASGCTPHKLTFTILIRNLENAGEEE 215
K C P+ +T++ILI L AG E
Sbjct: 234 KEENCRPNSVTYSILIHGLCEAGRLE 259
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ Y++++ L + + A L + GL PD Y ++ + + G ++ A
Sbjct: 379 KPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFN 438
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ +M ++G P TFT LI L G E
Sbjct: 439 IFNSMNSAGLEPDGFTFTALIDGLCKLGRLE 469
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+ +I L + +I A +F ++ K GL P + +I Y + G + A +
Sbjct: 310 PNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQL 369
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
M+ C P+ T+ L+ L
Sbjct: 370 LSVMEKGNCKPNIRTYNELMEGL 392
>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 819
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 83/171 (48%), Gaps = 11/171 (6%)
Query: 46 RDANKKPMWRSRVLSSEAIQAVHAM--------KLAKSSSKLEEGFQSRICRLLKADLLD 97
RD N W LS + Q + ++ +L S+L E F+ + ++LL
Sbjct: 82 RDPNLGKPWSYHGLSPQGQQVLRSLIEPNFDSGQLDSVLSELFEPFKDK-PESTSSELLA 140
Query: 98 TLTELRRQNELDLALKVFNFVRKEVWYKP--DLSLYSDMILMLGKNKQIAMAEELFCELK 155
L L + DLAL+ F++ K+ Y+ D S+ + +I MLGK +++ A +F L+
Sbjct: 141 FLKGLGFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQ 200
Query: 156 KEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
++G D YT +I + G +A+ ++ M+ GC P +T+ +++
Sbjct: 201 EDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILN 251
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%)
Query: 59 LSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFV 118
L EA Q MK A GF ++ LLD + R E A+KV N +
Sbjct: 294 LHQEAAQVFEEMKAA--------GFSYD--KVTYNALLDVYGKSHRPKE---AMKVLNEM 340
Query: 119 RKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM 178
+ P + Y+ +I ++ + A EL ++ ++G PD YT ++ + + G
Sbjct: 341 VLN-GFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGK 399
Query: 179 IDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
++ AM +E M+ +GC P+ TF I+ N G+
Sbjct: 400 VESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGK 434
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 1/124 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L+ R +++ A+ +F +R KP++ ++ I M G + ++F E+ G
Sbjct: 391 LSGFERAGKVESAMSIFEEMRN-AGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCG 449
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
L PD + ++ V+ Q GM + ++ MK +G P + TF LI G E
Sbjct: 450 LSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAM 509
Query: 219 AVRR 222
V R
Sbjct: 510 TVYR 513
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K + D Y+ ++ + GK+ + A ++ E+ G P Y +I Y + GM+
Sbjct: 306 KAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGML 365
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
D+AME M G P T+T L+ E AG+ E ++
Sbjct: 366 DEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSI 406
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ +I +N ++ A +F E++ G+ PD Y IG Y M ++A+
Sbjct: 696 KPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIG 755
Query: 185 TYETMKASGCTPHKLTFTILI 205
M GC P++ T+ ++
Sbjct: 756 VVRYMIKHGCRPNQNTYNSIV 776
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ ++ ++ + G+N + +F E+K+ G P+ + +I Y + G ++AM
Sbjct: 452 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTV 511
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
Y M +G TP T+ ++ L G
Sbjct: 512 YRRMLDAGVTPDLSTYNTVLAALARGG 538
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P L ++L+ K + AE F ELK+ G PD M+ +Y + M+ KA
Sbjct: 591 EPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANG 650
Query: 185 TYETMKASGCTPHKLTFTILI----RNLENAGEEE-----LVAAVRRDCIQY 227
+ MK G TP T+ L+ R+ + EE L ++ D I Y
Sbjct: 651 VLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISY 702
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE + P ++ Y+ ++ M ++ +EE+ E+ +G+ PD Y +I Y + +
Sbjct: 656 KERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRM 715
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNL-ENAGEEELVAAVR 221
A + M+ SG P +T+ I + ++ EE + VR
Sbjct: 716 RDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVR 758
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 125 KPDLSLYSDMILMLGK-----NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KP L Y+ ++ + GK NK ++ E++ K +G+ PD Y +I + +
Sbjct: 240 KPTLITYNVILNVFGKMGTPWNKITSLVEKM----KSDGIAPDAYTYNTLITCCKRGSLH 295
Query: 180 DKAMETYETMKASGCTPHKLTFTILI 205
+A + +E MKA+G + K+T+ L+
Sbjct: 296 QEAAQVFEEMKAAGFSYDKVTYNALL 321
>gi|15241801|ref|NP_201043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180621|sp|Q9LVA2.1|PP443_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g62370
gi|8809650|dbj|BAA97201.1| unnamed protein product [Arabidopsis thaliana]
gi|332010218|gb|AED97601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 982
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 96 LDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELK 155
L + EL ++N+ D A + + +E+ +P +++YS +I LGK ++ AEE F ++
Sbjct: 551 LIVVNELCKKNDRDAAFAIID-AMEELGLRPTVAIYSSIIGSLGKQGRVVEAEETFAKML 609
Query: 156 KEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ G+ PD Y MI Y + G ID+A E E + P T+T+LI G E
Sbjct: 610 ESGIQPDEIAYMIMINTYARNGRIDEANELVEEVVKHFLRPSSFTYTVLISGFVKMGMME 669
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 41/204 (20%), Positives = 87/204 (42%), Gaps = 6/204 (2%)
Query: 35 KIQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKAD 94
K+++L +DAN + + V ++ Q + L++ + G C L
Sbjct: 460 KVESLLGEIARKDANLAAVGLAVVTTALCSQRNYIAALSRIEKMVNLG-----CTPLPFS 514
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
+ L ++N ++ + N + +E+ + PD+ Y ++ L K A + +
Sbjct: 515 YNSVIKCLFQENIIEDLASLVNII-QELDFVPDVDTYLIVVNELCKKNDRDAAFAIIDAM 573
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
++ GL P +Y+ +IG + G + +A ET+ M SG P ++ + I+I G
Sbjct: 574 EELGLRPTVAIYSSIIGSLGKQGRVVEAEETFAKMLESGIQPDEIAYMIMINTYARNGRI 633
Query: 215 ELVAAVRRDCIQYVEFPERFLEEV 238
+ + + +++ P F V
Sbjct: 634 DEANELVEEVVKHFLRPSSFTYTV 657
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP +S+ S LG + A E+ ++KK + P+ ++ +I Y G +D+A
Sbjct: 761 KPLVSIPSS----LGNYGSKSFAMEVIGKVKKS-IIPNLYLHNTIITGYCAAGRLDEAYN 815
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
E+M+ G P+ +T+TIL+++ AG+ E
Sbjct: 816 HLESMQKEGIVPNLVTYTILMKSHIEAGDIE 846
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 66/131 (50%), Gaps = 6/131 (4%)
Query: 79 LEEGFQSRICRLLKAD-LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILM 137
+E G + + RL++ L+ + L A++V V+K + P+L L++ +I
Sbjct: 746 VEPGKEKLLQRLIRTKPLVSIPSSLGNYGSKSFAMEVIGKVKKSII--PNLYLHNTIITG 803
Query: 138 LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH 197
++ A ++KEG+ P+ YT ++ +++ G I+ A++ +E + C P
Sbjct: 804 YCAAGRLDEAYNHLESMQKEGIVPNLVTYTILMKSHIEAGDIESAIDLFE---GTNCEPD 860
Query: 198 KLTFTILIRNL 208
++ ++ L++ L
Sbjct: 861 QVMYSTLLKGL 871
>gi|147778634|emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
Length = 1494
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 9/129 (6%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT- 163
Q+ AL+V+ ++ WY P+ + + ++ +LGK Q A+A E+F + E +T
Sbjct: 197 QSSWQRALEVYEWLNLRHWYSPNARMLATILSVLGKANQEALAVEIFA--RAEAAXGNTV 254
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE------ELV 217
+VY M+GVY + G K E + M++ GC P ++F LI +G EL+
Sbjct: 255 QVYNAMMGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELL 314
Query: 218 AAVRRDCIQ 226
VRR IQ
Sbjct: 315 NEVRRSGIQ 323
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ R++ L+ A+KV+N + +PDL Y+ MI + G+ A LF +L+ +G
Sbjct: 333 ISACSRESNLEEAVKVYNDMVAHR-CQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKG 391
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
PD Y ++ + + G +DK E E M G ++T+ +I G+ +L
Sbjct: 392 FLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAF 451
Query: 219 AVRRD 223
+ D
Sbjct: 452 QLYSD 456
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PD Y+ ++ + + +E+ ++ K G D Y +I +Y + G D A
Sbjct: 392 FLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAF 451
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENA 211
+ Y MK SG +P +T+T+LI +L A
Sbjct: 452 QLYSDMKLSGRSPDAVTYTVLIDSLGKA 479
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K Y P + LY MI +L K K++ E + E++ PD ++ ++ +Y +G
Sbjct: 911 KAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVAXFKPDLSIWNSVLKLYTGIGDF 970
Query: 180 DKAMETYETMKASGCTPHKLTFTILI 205
K + Y+ ++ +G P + T+ LI
Sbjct: 971 KKTGQVYQLIQEAGLKPDEDTYNTLI 996
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 50/93 (53%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E KPD Y+ +ILM ++++ L E+++ GL+P Y +I + ++ M+
Sbjct: 981 QEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMV 1040
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
++A E +E + + C + + I+++ N+G
Sbjct: 1041 EQAEELFEGLLSKECKLDRSFYHIMMKMFRNSG 1073
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
++ + DLA ++++ + K PD Y+ +I LGK I A E+ E+ + P
Sbjct: 443 KRGQHDLAFQLYSDM-KLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNAXVKPTL 501
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
R ++ +I Y + G +A ET++ M SG P L +++++ L E + ++
Sbjct: 502 RTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQE 561
Query: 224 CIQYVEFPERFLEEV 238
+ + P+ L EV
Sbjct: 562 MVLHSFKPDHALYEV 576
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
+LA+++ N VR+ +PD+ Y+ +I + + A +++ ++ PD Y
Sbjct: 308 NLAIELLNEVRRS-GIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNA 366
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
MI VY + GM +A ++ +++ G P +T+ L+ G + V + D ++
Sbjct: 367 MISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVK 424
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP L +S +I K + AEE F + + G+ PD Y+ M+ + L+ KAM+
Sbjct: 498 KPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMK 557
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
Y+ M P + +++R L EE V V +D
Sbjct: 558 LYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKD 596
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ D Y+ +I M GK Q +A +L+ ++K G PD YT +I + MI +A
Sbjct: 427 FGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAA 486
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGE 213
E M + P TF+ LI AG+
Sbjct: 487 EVMSEMLNAXVKPTLRTFSALICGYAKAGK 516
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 1/143 (0%)
Query: 64 IQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVW 123
I A +++ + + +L EG S+ C+L ++ + R A K+ V KE
Sbjct: 1031 ISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLG-VMKEAG 1089
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+P ++ +++ + Q AE++ LK EGL T Y+ +I YL+ G + A+
Sbjct: 1090 VEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVAI 1149
Query: 184 ETYETMKASGCTPHKLTFTILIR 206
+ MK G P +T +R
Sbjct: 1150 QKLMEMKKDGLEPDHRIWTCFVR 1172
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+ V +P L Y +I GK + + AEELF L + D Y M+ ++ G
Sbjct: 1016 RRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRNSGNH 1075
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
KA + MK +G P T +L+ + +G+ E
Sbjct: 1076 SKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPE 1111
>gi|224112076|ref|XP_002316075.1| predicted protein [Populus trichocarpa]
gi|222865115|gb|EEF02246.1| predicted protein [Populus trichocarpa]
Length = 434
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 69/126 (54%), Gaps = 7/126 (5%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A++VF ++++ +Y+P + Y ++++LG+ Q A +LF E+ +EG++P T +YT ++
Sbjct: 70 AIQVFEMLKEQPFYQPKEATYMKLLVLLGRCGQPQRAHQLFDEMVEEGIEPTTELYTALL 129
Query: 171 GVYLQVGMIDKAMETYETMKA-SGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVE 229
Y + +ID+ MK+ C P T++ L++ +A EL+ + Y E
Sbjct: 130 AAYCRNNLIDEGFSIINQMKSLPRCQPDVYTYSTLLKACVDASRFELIDTL------YQE 183
Query: 230 FPERFL 235
ER +
Sbjct: 184 MDERLI 189
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ + ++ + G QI + E + + + G++P+TR + +IG Y + M DK
Sbjct: 226 KPDVWTMNIILSVFGNEGQIDLMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSS 285
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
E M+ T+ +I + G+
Sbjct: 286 VMEYMRKVQFPWTTSTYNNVIEAFADVGD 314
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R N +D + N ++ +PD+ YS ++ + + + L+ E+ + + P+T
Sbjct: 134 RNNLIDEGFSIINQMKSLPRCQPDVYTYSTLLKACVDASRFELIDTLYQEMDERLISPNT 193
Query: 164 RVYTEMIGVYLQVGMIDKAMETY--ETMKASGCTPHKLTFTILIRNLENAGEEELV 217
++ Y +VGM D+ ME E ++++ C P T I++ N G+ +L+
Sbjct: 194 VTQNVVLSGYGRVGMYDQ-MERVLSEMLESAACKPDVWTMNIILSVFGNEGQIDLM 248
>gi|326490553|dbj|BAJ84940.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 856
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 6/131 (4%)
Query: 98 TLTELR-RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKK 156
TL ++ + L++A+ ++ + +EV PD YS M+ LGK Q+A A +LFCE+
Sbjct: 438 TLIDIHAKSGYLEVAMDLYGRM-QEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMID 496
Query: 157 EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
G P+ Y +I + + D ++ Y M+ +G P K+T++I++ L + G +
Sbjct: 497 NGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGHLDE 556
Query: 217 VAAV----RRD 223
AV RRD
Sbjct: 557 AEAVFLEMRRD 567
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 10/133 (7%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R N L A+KVF + + Y+PD Y +I + K+ + +A +L+ +++ GL PDT
Sbjct: 410 RANYLREAVKVFEEM-EGAGYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDT 468
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI------RNLENAGE---E 214
Y+ M+ + G + A + + M +GCTP+ +T+ I+I RN +N + +
Sbjct: 469 FTYSAMVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRD 528
Query: 215 ELVAAVRRDCIQY 227
+A R D I Y
Sbjct: 529 MQIAGFRPDKITY 541
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/229 (19%), Positives = 92/229 (40%), Gaps = 44/229 (19%)
Query: 31 PSGKKIQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRL 90
P G + + G +N + + R + + + MK + + +G + +I
Sbjct: 273 PQGPSVGTMKGHGGGPQSNLRSLKSLRAVE-QYYHTLQQMKWGPMTEHVLDGLRCKI--- 328
Query: 91 LKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAM---- 146
D L+ ++ ++AL F++++++ +K D Y+ MI +LG+ KQ
Sbjct: 329 ---DAFQANQVLKLLHDHNIALGFFHWLKRQPGFKHDGHTYTTMIGILGQAKQFGTMRKL 385
Query: 147 -------------------------------AEELFCELKKEGLDPDTRVYTEMIGVYLQ 175
A ++F E++ G PD Y +I ++ +
Sbjct: 386 LDEMSSVNCKPTVVTYNRIIHAYGRANYLREAVKVFEEMEGAGYQPDRVTYCTLIDIHAK 445
Query: 176 VGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDC 224
G ++ AM+ Y M+ G +P T++ ++ L G +L AA + C
Sbjct: 446 SGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGG--QLAAAYKLFC 492
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
LD A VF +R++ + PD +Y ++ + GK + A + + ++GL P+
Sbjct: 552 GHLDEAEAVFLEMRRD--WAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNVPT 609
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
++ +L++ A + M A G P T+T+L+
Sbjct: 610 CNSLLSAFLKLNRFQDAYGVLQNMLAQGLVPSLQTYTLLL 649
>gi|255557937|ref|XP_002519997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540761|gb|EEF42321.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1429
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 12/128 (9%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL+VF ++ WY P+ + + ++ +LGK Q A+A E+F + +D +VY M+
Sbjct: 159 ALEVFEWLNLRHWYSPNARMLATILAVLGKANQEALAVEIFIR-AESTVDNTVQVYNAMM 217
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE------ELVAAVRR-- 222
GVY + G +K + M+ GC P ++F LI AG EL+ VRR
Sbjct: 218 GVYARTGRFNKVQGMLDLMRERGCEPDLVSFNTLINARLKAGAMTPNVAIELLNEVRRSG 277
Query: 223 ---DCIQY 227
D I Y
Sbjct: 278 LRPDIITY 285
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 36/150 (24%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ R++ L+ A+KVF+ + + +PDL Y+ MI + G+ AE+LF EL+ +G
Sbjct: 289 ISACSRESNLEEAVKVFDDMEAH-YCQPDLWTYNAMISVYGRCGFSGKAEQLFKELESKG 347
Query: 159 LDPDTRVYTEMIGVYLQVGMIDK-----------------------------------AM 183
PD Y ++ + + G +DK A+
Sbjct: 348 YFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFIRDEMTYNTIIHMYGKQGQHGLAL 407
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ Y MK SG TP +T+T+LI +L A +
Sbjct: 408 QLYRDMKLSGRTPDAITYTVLIDSLGKANK 437
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 48/99 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP L YS +I + Q AEE F +++ G+ PD Y+ M+ V+L+ KAM
Sbjct: 454 KPTLRTYSALICGYARAGQRLEAEETFDCMRRSGIRPDQLAYSVMLDVFLRFDEATKAMM 513
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
Y M G TP + ++RNL + E + + RD
Sbjct: 514 LYREMVRDGITPDPTVYGAMLRNLGRENKVEDIQRIIRD 552
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 82 GFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141
GFQ + K+ +L L R + + A K++ + K Y P + LY MI +L K
Sbjct: 835 GFQ-----ISKSSILLILDAFARVSNIAEAKKIYQGM-KAAGYFPTMHLYRIMIGLLCKG 888
Query: 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF 201
K++ E + E+++ G PD ++ M+ +Y + K ++ Y+ +K G P + T+
Sbjct: 889 KRVRDVEAMVTEMEEAGFRPDLSIWNSMLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTY 948
Query: 202 TILI 205
LI
Sbjct: 949 NTLI 952
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+Q + LAL+++ + K PD Y+ +I LGK ++ A + E+ G+ P
Sbjct: 399 KQGQHGLALQLYRDM-KLSGRTPDAITYTVLIDSLGKANKMVEAANVMSEMLNIGVKPTL 457
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
R Y+ +I Y + G +A ET++ M+ SG P +L +++++
Sbjct: 458 RTYSALICGYARAGQRLEAEETFDCMRRSGIRPDQLAYSVML 499
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 65/134 (48%), Gaps = 9/134 (6%)
Query: 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
++ L + +LD ALK +N R+ W+ ++Y +I +N+ A A ++F +++
Sbjct: 634 SIVTLCKAKQLDAALKEYNDTREFDWFTGSCTMYESLIQCCEENEFTAEASQIFSDMRFN 693
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE---- 213
G+ P +Y M+ +Y ++G + A + + G K++ + + +E G+
Sbjct: 694 GVKPSKSLYRSMVLMYCKMGFPETAHYLIDLAEIEGMPFDKISIDVAV--IETYGKLKLW 751
Query: 214 ---EELVAAVRRDC 224
E LV +R+ C
Sbjct: 752 QKAESLVGNLRQRC 765
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
++A+++ N VR+ +PD+ Y+ +I + + A ++F +++ PD Y
Sbjct: 264 NVAIELLNEVRRS-GLRPDIITYNTLISACSRESNLEEAVKVFDDMEAHYCQPDLWTYNA 322
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
MI VY + G KA + ++ +++ G P +T+ L+ G + V + + +Q
Sbjct: 323 MISVYGRCGFSGKAEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQ 380
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 4/134 (2%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+ + +P L Y +I GK + + AEELF EL +G D Y M+ +Y G
Sbjct: 972 RRIGLEPKLDTYKSLIAAFGKQQLVVDAEELFEELLSKGSKLDRSFYHIMMKIYRNSGNH 1031
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRRDCIQYVEFPERFL 235
KA + MK +G P T +L+ + ++G+ E+++ ++ + P +
Sbjct: 1032 SKAEKLLSMMKDAGVEPTIATMHLLMVSYGSSGQPQEAEKVLTNLKEMGLSLSTLPYSSV 1091
Query: 236 EEVYQKHRKTQVDL 249
+ Y K++ V +
Sbjct: 1092 IDAYLKNKDYSVGI 1105
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 11/115 (9%)
Query: 116 NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175
F+R E+ Y+ +I M GK Q +A +L+ ++K G PD YT +I +
Sbjct: 382 GFIRDEM-------TYNTIIHMYGKQGQHGLALQLYRDMKLSGRTPDAITYTVLIDSLGK 434
Query: 176 VGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRRDCIQ 226
+ +A M G P T++ LI AG+ EE +RR I+
Sbjct: 435 ANKMVEAANVMSEMLNIGVKPTLRTYSALICGYARAGQRLEAEETFDCMRRSGIR 489
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E ++PDLS+++ M+ + +++ +K++GL PD Y +I +Y +
Sbjct: 902 EEAGFRPDLSIWNSMLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMYCRDHRP 961
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
++ M+ G P T+ LI G+++LV
Sbjct: 962 EEGCSLMHEMRRIGLEPKLDTYKSLIAAF---GKQQLV 996
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 46/93 (49%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE +PD Y+ +I+M ++ + L E+++ GL+P Y +I + + ++
Sbjct: 937 KEDGLQPDEDTYNTLIVMYCRDHRPEEGCSLMHEMRRIGLEPKLDTYKSLIAAFGKQQLV 996
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
A E +E + + G + + I+++ N+G
Sbjct: 997 VDAEELFEELLSKGSKLDRSFYHIMMKIYRNSG 1029
>gi|125537564|gb|EAY84052.1| hypothetical protein OsI_39281 [Oryza sativa Indica Group]
Length = 762
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 10/133 (7%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R N L A+KVF ++K Y+PD Y +I + K + +A +L+ +++ GL PDT
Sbjct: 413 RANYLREAVKVFEEMQK-AGYEPDRVTYCTLIDIHAKGGYLEVAMDLYTRMQEVGLSPDT 471
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI------RNLENA---GEE 214
Y+ M+ + G + A + + M +GCTP+ +T+ I+I RN EN ++
Sbjct: 472 FTYSAMVNCLGKGGHLAAAYKLFCEMVENGCTPNLVTYNIMIALQAKARNYENVVKLYKD 531
Query: 215 ELVAAVRRDCIQY 227
VA R D I Y
Sbjct: 532 MQVAGFRPDKITY 544
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
L++A+ ++ + +EV PD YS M+ LGK +A A +LFCE+ + G P+ Y
Sbjct: 452 LEVAMDLYTRM-QEVGLSPDTFTYSAMVNCLGKGGHLAAAYKLFCEMVENGCTPNLVTYN 510
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
MI + + + ++ Y+ M+ +G P K+T++I++ L + G + AV
Sbjct: 511 IMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAV 563
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 93/236 (39%), Gaps = 44/236 (18%)
Query: 26 PQISLPSGKKIQALTVTCGLRDANKKPMWRSRVLSS--EAIQAVHAMKLAKSSSKLEEGF 83
P + SG K QAL T ++ P R L S Q H ++ K
Sbjct: 267 PAMYTGSGHKSQALAGT--IKSHGGGPQSNLRSLKSLRSVEQYYHTLQQMKWVPMTGHVL 324
Query: 84 QSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ 143
+ C++ D L+ ++ +AL F +++++ +K D Y+ MI +LG+ +Q
Sbjct: 325 DNLHCKI---DAFQANQVLKLLHDHTIALGFFQWLKRQPGFKHDGHSYTTMIGILGQARQ 381
Query: 144 IAM-----------------------------------AEELFCELKKEGLDPDTRVYTE 168
A ++F E++K G +PD Y
Sbjct: 382 FGTMRKLLDEMNSVHCKPTVVTYNRIIHAYGRANYLREAVKVFEEMQKAGYEPDRVTYCT 441
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDC 224
+I ++ + G ++ AM+ Y M+ G +P T++ ++ L G L AA + C
Sbjct: 442 LIDIHAKGGYLEVAMDLYTRMQEVGLSPDTFTYSAMVNCLGKGG--HLAAAYKLFC 495
Score = 43.5 bits (101), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++PD YS ++ +LG + AE +F E++ + PD VY ++ ++ + G +DKA+
Sbjct: 537 FRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRHD-WAPDEPVYGLLVDLWGKAGNVDKAL 595
Query: 184 ETYETMKASGCTPHKLTFTILI 205
Y M G P+ T L+
Sbjct: 596 GWYHAMLQDGLQPNVPTCNSLL 617
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
LD A VF +R + + PD +Y ++ + GK + A + + ++GL P+
Sbjct: 556 HLDEAEAVFIEMRHD--WAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNVPTC 613
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
++ +L++ A + M A G P T+T+L+
Sbjct: 614 NSLLSAFLKINRFQDAYSVLQNMLAQGLVPSLQTYTLLL 652
>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
Length = 570
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 67/128 (52%), Gaps = 8/128 (6%)
Query: 95 LLDTLTELRRQNE-LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
LL+ L ++ R E +DL K+ + PD+ Y+ +I LGK K+ A +LF E
Sbjct: 206 LLNGLCKMGRLEEAIDLLRKIV-----DNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKE 260
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ GL DT YT +I LQ G I +A Y+TM + GC P +T + +I L AG
Sbjct: 261 MALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAG- 319
Query: 214 EELVAAVR 221
+ AAVR
Sbjct: 320 -RIGAAVR 326
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ S MI L K +I A +F ++ GL P+ VY+ +I + +D A+E
Sbjct: 303 PDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEM 362
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAA 219
MK + CTP +T+ ILI L +G+ E A
Sbjct: 363 LAQMKKAFCTPDTITYNILIDGLCKSGDVEAARA 396
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + ++D AL++ ++K + PD Y+ +I L K+ + A F E+ + G P
Sbjct: 350 LCKARKMDCALEMLAQMKK-AFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKP 408
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
D Y ++ + + G D A ++ M +S C+P+ +T+ LI L
Sbjct: 409 DVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGL 455
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + + A+++F + P+ +YS +I L K +++ A E+ ++KK P
Sbjct: 315 LCKAGRIGAAVRIFKSMEAR-GLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTP 373
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
DT Y +I + G ++ A ++ M +GC P T+ IL+ AG + V
Sbjct: 374 DTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVF 433
Query: 222 RD 223
D
Sbjct: 434 DD 435
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ Y+ ++ L KNK+I A L ++ G P Y ++ ++G +++A++
Sbjct: 164 DIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLL 223
Query: 187 ETMKASGCTPHKLTFTILIRNL 208
+ +GCTP +T+T LI L
Sbjct: 224 RKIVDNGCTPDVVTYTSLIDGL 245
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ D A VF+ + P++ Y +I L K +Q+ A F +K+ G PD+
Sbjct: 422 KAGNTDAACGVFDDMSSS-HCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDS 480
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASG 193
VY+ ++ + G ++ ++ M+ SG
Sbjct: 481 FVYSSLVDGLCKSGKLEGGCMLFDEMERSG 510
>gi|297852926|ref|XP_002894344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297340186|gb|EFH70603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 650
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ R E+D A+ +F + + KPD+ Y+ +I LGKN + A F E++++G
Sbjct: 484 ISSFGRVGEVDEAINIFEELERSDC-KPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKG 542
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
L+PD Y+ ++ + + ++ A +E M GC P+ +T+ IL+ LE +G
Sbjct: 543 LNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKSG 596
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 50/87 (57%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D +Y+ + LGK KQI+ +LF ++KK+G PD Y +I + +VG +D+A+ +
Sbjct: 441 DTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILISSFGRVGEVDEAINIF 500
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGE 213
E ++ S C P +++ LI L G+
Sbjct: 501 EELERSDCKPDIISYNSLINCLGKNGD 527
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E PD+ YS ++ GK +++ MA LF E+ +G P+ Y ++ + G
Sbjct: 539 QEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKSGRT 598
Query: 180 DKAMETYETMKASGCTPHKLTFTILIR 206
+A++ Y MK G TP +T+T+L R
Sbjct: 599 AEAVDLYTKMKQQGLTPDSITYTVLER 625
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 67/127 (52%), Gaps = 8/127 (6%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A +VF ++K + + S Y+ MI +G+ + A LF E+ EGL + Y ++
Sbjct: 254 ACQVFEDMKKRHCRRDEYS-YTIMIRTMGRIGKYDEAVGLFNEMITEGLTLNVVGYNTLM 312
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEF 230
V + M+DKA++ + M +GC P++ T+++++ L G+ VR D I VE
Sbjct: 313 QVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLVLNLLVAEGQ-----LVRLDGI--VEI 365
Query: 231 PERFLEE 237
+R++ +
Sbjct: 366 SKRYMTQ 372
>gi|168019209|ref|XP_001762137.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686541|gb|EDQ72929.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 513
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 66/130 (50%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
DL++T+ E RRQ + A+ ++ ++ + +KPD+ ++ ++ G+ KQ AE F
Sbjct: 67 DLMETVAEFRRQRKWRSAIVIYEWILQGSMFKPDVGCFNMLMDAYGRTKQWTEAENTFHL 126
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+KK P + ++ Y + G +++A MK S C+P +T+ + L +G
Sbjct: 127 MKKFQCLPTETSFNVLMAAYSRGGQLERAERVLHEMKESNCSPGLVTYNTYLEVLNKSGS 186
Query: 214 EELVAAVRRD 223
+L V R+
Sbjct: 187 WQLAEDVFRE 196
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ + +I + + I AEE+F L+ +G PD +T ++G Y + + K +
Sbjct: 413 KPDIITLNTLINVYAQGGYIERAEEIFNSLESKGFTPDVMSWTSLMGAYSKRKLYRKCVS 472
Query: 185 TYETMKASGCTPHKLTFTILI 205
Y+ M +GC P + T +L+
Sbjct: 473 VYQKMLIAGCIPDRATAKVLL 493
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K+V +KP + + ++ K ++ AE L+ G++PDT ++ ++G Y G +
Sbjct: 338 KKVGFKPTMKSHILLLSAFVKAGRVTDAENFVRRLESMGVEPDTFMFNSLLGAYGNSGRM 397
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
DK YE+M+ S C P +T LI G
Sbjct: 398 DKMESLYESMQGSVCKPDIITLNTLINVYAQGG 430
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R +L+ A +V + + KE P L Y+ + +L K+ +AE++F E++ G+ P
Sbjct: 148 RGGQLERAERVLHEM-KESNCSPGLVTYNTYLEVLNKSGSWQLAEDVFREMQNRGVPPAV 206
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+T MI +Y + KA +++M+ + C P T+T LI
Sbjct: 207 NTFTLMINIYGKAHHSAKAEHLFQSMRKALCPPSLFTYTALI 248
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P L Y+ +I + AEE+F EL+ G PD Y ++ Y + G A E
Sbjct: 239 PSLFTYTALINAHAREGNCVRAEEIFAELQSVGFVPDIYTYNALLEAYSRGGHPAGAKEV 298
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ETM +G +++ ILI AG
Sbjct: 299 FETMLEAGVKADHVSYNILIDAFGRAG 325
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 116 NFVRK--EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY 173
NFVR+ + +PD +++ ++ G + ++ E L+ ++ PD +I VY
Sbjct: 367 NFVRRLESMGVEPDTFMFNSLLGAYGNSGRMDKMESLYESMQGSVCKPDIITLNTLINVY 426
Query: 174 LQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Q G I++A E + ++++ G TP +++T L+
Sbjct: 427 AQGGYIERAEEIFNSLESKGFTPDVMSWTSLM 458
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 6/144 (4%)
Query: 73 AKSSSKLEEGFQSRICRLLKADLLDTLTEL----RRQNELDLALKVFNFVRKEVWYKPDL 128
A S+K E FQS L L T T L R+ A ++F + + V + PD+
Sbjct: 219 AHHSAKAEHLFQSMRKALCPPSLF-TYTALINAHAREGNCVRAEEIFAEL-QSVGFVPDI 276
Query: 129 SLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYET 188
Y+ ++ + A A+E+F + + G+ D Y +I + + G+I A Y++
Sbjct: 277 YTYNALLEAYSRGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGLISDAQAIYDS 336
Query: 189 MKASGCTPHKLTFTILIRNLENAG 212
MK G P + +L+ AG
Sbjct: 337 MKKVGFKPTMKSHILLLSAFVKAG 360
>gi|115489794|ref|NP_001067384.1| Os12g0638900 [Oryza sativa Japonica Group]
gi|77556813|gb|ABA99609.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113649891|dbj|BAF30403.1| Os12g0638900 [Oryza sativa Japonica Group]
gi|125580213|gb|EAZ21359.1| hypothetical protein OsJ_37016 [Oryza sativa Japonica Group]
Length = 859
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 10/133 (7%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R N L A+KVF ++K Y+PD Y +I + K + A +L+ +++ GL PDT
Sbjct: 413 RANYLREAVKVFEEMQK-AGYEPDRVTYCTLIDIHAKGGYLEFAMDLYTRMQEVGLSPDT 471
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI------RNLENA---GEE 214
Y+ M+ + G + A + + M +GCTP+ +T+ I+I RN EN ++
Sbjct: 472 FTYSAMVNCLGKGGHLAAAYKLFCEMVENGCTPNLVTYNIMIALQAKARNYENVVKLYKD 531
Query: 215 ELVAAVRRDCIQY 227
VA R D I Y
Sbjct: 532 MQVAGFRPDKITY 544
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
L+ A+ ++ + +EV PD YS M+ LGK +A A +LFCE+ + G P+ Y
Sbjct: 452 LEFAMDLYTRM-QEVGLSPDTFTYSAMVNCLGKGGHLAAAYKLFCEMVENGCTPNLVTYN 510
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
MI + + + ++ Y+ M+ +G P K+T++I++ L + G + AV
Sbjct: 511 IMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAV 563
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 94/236 (39%), Gaps = 44/236 (18%)
Query: 26 PQISLPSGKKIQALTVTCGLRDANKKPMWRSRVLSS--EAIQAVHAMKLAKSSSKLEEGF 83
P + SG K QAL T ++ P R L S Q H ++ K E
Sbjct: 267 PAMYTGSGHKSQALAGT--IKSHGGGPQSNLRSLKSLRSVEQYYHTLQQMKWGPMTEHVL 324
Query: 84 QSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ 143
+ C++ D L+ ++ +AL F +++++ +K D Y+ MI +LG+ +Q
Sbjct: 325 DNLHCKI---DAFQANQVLKLLHDHTIALGFFQWLKRQPGFKHDGHSYTTMIGILGQARQ 381
Query: 144 IAM-----------------------------------AEELFCELKKEGLDPDTRVYTE 168
A ++F E++K G +PD Y
Sbjct: 382 FGTMRKLLDEMNSVHCKPTVVTYNRIIHAYGRANYLREAVKVFEEMQKAGYEPDRVTYCT 441
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDC 224
+I ++ + G ++ AM+ Y M+ G +P T++ ++ L G L AA + C
Sbjct: 442 LIDIHAKGGYLEFAMDLYTRMQEVGLSPDTFTYSAMVNCLGKGG--HLAAAYKLFC 495
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++PD YS ++ +LG + AE +F E++ + PD VY ++ ++ + G +DKA+
Sbjct: 537 FRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRHD-WAPDEPVYGLLVDLWGKAGNVDKAL 595
Query: 184 ETYETMKASGCTPHKLTFTILI 205
Y M G P+ T L+
Sbjct: 596 GWYHAMLQDGLQPNVPTCNSLL 617
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
LD A VF +R + + PD +Y ++ + GK + A + + ++GL P+
Sbjct: 556 HLDEAEAVFIEMRHD--WAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNVPTC 613
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
++ +L++ A + M A G P T+T+L+
Sbjct: 614 NSLLSAFLKINRFQDAYSVLQNMLAQGLVPSLQTYTLLL 652
>gi|255556562|ref|XP_002519315.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541630|gb|EEF43179.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 491
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 67/126 (53%), Gaps = 7/126 (5%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL+VF ++++ +Y P Y ++++LG+ Q A +LF E+ +EG++P +YT ++
Sbjct: 113 ALEVFEMLKEQPFYHPKEGTYMKLLVLLGRTGQPQRAHQLFDEMVEEGIEPTAELYTALL 172
Query: 171 GVYLQVGMIDKAMETYETMKA-SGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVE 229
Y + + D+A + MK C P T++ L++ +A ELV A+ Y E
Sbjct: 173 AAYCRNHLTDEAFSILQQMKTLPRCLPDVYTYSTLLKACVDASRFELVEAL------YQE 226
Query: 230 FPERFL 235
ER +
Sbjct: 227 MGERLI 232
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ + ++ + G QI + E+ + + + G++P+TR + +IG Y + M DK
Sbjct: 269 KPDVWTMNIILSVFGNKGQIDLMEKWYEKFRSFGIEPETRTFNILIGAYGKKRMYDKMSS 328
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAA 219
E M+ KL F N E VA
Sbjct: 329 VMEFMR-------KLQFPWTTSTYNNVIEAFAVAG 356
>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 530
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 85/162 (52%), Gaps = 15/162 (9%)
Query: 59 LSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFV 118
L++EA+ A + M E + + ++ + ++ +L + RR +E +L F+ +
Sbjct: 193 LAAEAVHAFNRM----------EDYGCKPDKVSFSIVISSLCKKRRASEAEL---FFDSL 239
Query: 119 RKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM 178
+ + ++PD+ +Y+ ++ + IA AEE+F ++K+ G+ P+ Y+ +I + G
Sbjct: 240 KHK--FEPDVIVYTSLVHGWCRAGDIAKAEEVFSDMKEAGVKPNVYTYSIVIDSLCRCGQ 297
Query: 179 IDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
I +A + + M +GC P+ +TF L+R AG E V V
Sbjct: 298 ITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQV 339
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R ++ A +VF+ + KE KP++ YS +I L + QI A ++F E+ G DP+
Sbjct: 259 RAGDIAKAEEVFSDM-KEAGVKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNA 317
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
+ ++ V+++ G +K ++ Y MK GC +++ LI + + +E L AV+
Sbjct: 318 VTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCAADTISYNFLIES--HCKDENLDEAVK 373
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
+L FN+ + Y++MI + GK + +A L +K G+ ++ ++
Sbjct: 126 SLAFFNWATTLEGFPSSPEPYNEMIDLAGKLRHFDLAWHLIDLMKSRGVRITVSTFSVLV 185
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL---ENAGEEEL 216
Y++ G+ +A+ + M+ GC P K++F+I+I +L A E EL
Sbjct: 186 RRYVRAGLAAEAVHAFNRMEDYGCKPDKVSFSIVISSLCKKRRASEAEL 234
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 112 LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIG 171
L+V+N + K + D Y+ +I K++ + A ++ + K+G+ P+ + + G
Sbjct: 337 LQVYNQM-KRLGCAADTISYNFLIESHCKDENLDEAVKVLDTMVKKGVAPNASTFNSIFG 395
Query: 172 VYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
++ ++ A Y MK C P+ LT+ IL+R ++ ++V ++++
Sbjct: 396 CIAELHDVNGAHRMYAKMKELKCMPNTLTYNILMRMFADSKSIDMVLKLKKE 447
>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
Length = 418
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 55/96 (57%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ YS +I L K ++ A ELF E+ GL P+ +T +I V+ + GM+D AME
Sbjct: 203 QPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAME 262
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
Y+ M + G +P +T+ LI L G+ + V A+
Sbjct: 263 IYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRAL 298
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 114 VFNFVRK--EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIG 171
V++F ++ E Y L ++ ++ K ++ A+ +F + K GL P + ++
Sbjct: 120 VWDFYKEILECGYPASLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMN 179
Query: 172 VYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
Y+++G +D+ M ASG P T+++LI L
Sbjct: 180 GYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGL 216
Score = 37.4 bits (85), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 98 TLTELRRQNEL-DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKK 156
TL ++ +N + D A++++ + + + PDL Y+ +I L K + L E+
Sbjct: 246 TLIDVHCKNGMVDSAMEIYKQMLSQ-GFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSM 304
Query: 157 EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
GL PD YT +I + G ++ A E + M + +T L+ L G +
Sbjct: 305 NGLKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRAD 363
>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
Length = 571
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
N++ AL +F +R + + +PD+ Y+++I LGK +I A F E+++EG PDT V
Sbjct: 279 NDVHGALSLFEEMRHQ-YCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIV 337
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
MI + G +D AM+ ++ M C P +T+ +I+ L
Sbjct: 338 MNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKAL 380
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 71/152 (46%)
Query: 61 SEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRK 120
SE ++ + K+ + + ++R C+ + L + + + +++N +
Sbjct: 163 SEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMST 222
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E PD YS +I K + A +L E+K G+ P T++YT ++ ++ ++ +
Sbjct: 223 EGHCFPDTMTYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVH 282
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAG 212
A+ +E M+ C P T+T LIR L AG
Sbjct: 283 GALSLFEEMRHQYCRPDVFTYTELIRGLGKAG 314
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 8/142 (5%)
Query: 80 EEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
E+GF C L+D L + +R DLA ++F + KE +Y+ MI LG
Sbjct: 434 EKGFPP--CPAAYCSLIDALGKAKR---YDLACELFQEL-KENCGSSSSRVYAVMIKHLG 487
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
K ++ A +F E+ K G PD Y ++ + GM+D+A+ T M+ GC P
Sbjct: 488 KAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDIN 547
Query: 200 TFTILIRNLENAGEEELVAAVR 221
++ I++ L+ +E+L+ R
Sbjct: 548 SYNIILNGLQK--QEDLIVQWR 567
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+ +L R+ D A+++ N + K+ +P +Y+ ++ + K + A LF E+
Sbjct: 236 LISAFCKLGRR---DSAIQLLNEM-KDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEM 291
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ + PD YTE+I + G ID+A + M+ GC P + +I L AG
Sbjct: 292 RHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAG 349
>gi|218191356|gb|EEC73783.1| hypothetical protein OsI_08468 [Oryza sativa Indica Group]
Length = 616
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ M+ LG Q+ A ++F E+ KEG P Y +I V + G ++ A+
Sbjct: 271 KPDVVSYTTMVHGLGVAGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNVEDAVT 330
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
++ M G P+ +T+T+LIR L +AG+
Sbjct: 331 VFDGMLVKGYVPNVVTYTVLIRGLCHAGK 359
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
+L+ A KVF+ + KE P ++ Y+ +I ++ K + A +F + +G P+
Sbjct: 288 GQLEKARKVFDEMAKE-GCAPSVATYNALIQVICKKGNVEDAVTVFDGMLVKGYVPNVVT 346
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
YT +I G ID+ ++ E MK GC P T+ +LIR L GE E
Sbjct: 347 YTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIVQTYNVLIRYLFEEGEME 396
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG-----LDPDTRVYTEMIGVYLQ 175
E P + Y+ ++ + Q+ A + F ++KK G PD YT M+
Sbjct: 227 ESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKKRGSKDESCKPDVVSYTTMVHGLGV 286
Query: 176 VGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
G ++KA + ++ M GC P T+ LI+ + G E
Sbjct: 287 AGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNVE 326
>gi|147771903|emb|CAN75708.1| hypothetical protein VITISV_031421 [Vitis vinifera]
Length = 1313
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 74/138 (53%), Gaps = 1/138 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L+ Q+ + L+VF +++ + Y P++ Y+ ++ +LG+ ++ + E+ K G+ P
Sbjct: 463 LKEQSSWERVLRVFEWIKSQEDYVPNVIHYNVVLRVLGRAQKWDELRLCWIEMAKNGVLP 522
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
Y ++ VY + G++ +A+ + MK G P ++T ++R L++AGE +
Sbjct: 523 TNNTYGMLVDVYGKAGLVKEALLWIKHMKLRGVFPDEVTMNTVVRVLKDAGEFDWADRFY 582
Query: 222 RD-CIQYVEFPERFLEEV 238
RD C+ VE + LE V
Sbjct: 583 RDWCVGKVELGDFDLESV 600
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D S Y+ I G + I A ++F +++ EGL+PD Y + G Y + GM++ Y
Sbjct: 1205 DSSFYNVAIYAYGASGSIDKALKMFMKMQDEGLEPDLVTYINLAGCYGKAGMLEGLKRIY 1264
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
+K P++ F +I +A +L V ++
Sbjct: 1265 SQLKYREIEPNESLFKAIIDAYRSAKRHDLAELVSQE 1301
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%)
Query: 119 RKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM 178
++++ K D+ Y+ M+ GK K A LF ++ G P+ Y +I ++ +
Sbjct: 850 KRDLGQKKDVVEYNVMVKAYGKAKLYDKAFSLFKGMRNHGTWPNESTYNSLIQMFSGGDL 909
Query: 179 IDKAMETYETMKASGCTPHKLTFTILI 205
+D+A + M+ G P LTF+ +I
Sbjct: 910 VDEARDILAEMQKMGFKPQCLTFSAVI 936
>gi|356508608|ref|XP_003523047.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Glycine max]
Length = 879
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
LD+A+ ++ + +EV PD YS MI LGK+ ++ A LFCE+ +G P+ Y
Sbjct: 469 LDVAMSMYERM-QEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYN 527
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+I + + A+E Y M+ +G P K+T++I++ L + G E AV
Sbjct: 528 ILIALQAKARNYQTALELYRDMQNAGFKPDKVTYSIVMEVLGHCGYLEEAEAV 580
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ +I G+ + A +F ++++ G +PD Y +I ++ + G +D AM
Sbjct: 415 QPNVVTYNRLIHSYGRANYLREALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMS 474
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDC 224
YE M+ G +P T++++I L +G L AA R C
Sbjct: 475 MYERMQEVGLSPDTFTYSVMINCLGKSG--NLSAAHRLFC 512
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 24/161 (14%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R N L AL VFN + +E+ +PD Y +I + K + +A ++ +++ GL PDT
Sbjct: 430 RANYLREALNVFNQM-QEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDT 488
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI----------------RN 207
Y+ MI + G + A + M GC P+ +T+ ILI R+
Sbjct: 489 FTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALELYRD 548
Query: 208 LENAG------EEELVAAVRRDCIQYVEFPERFLEEVYQKH 242
++NAG +V V C Y+E E E+ Q H
Sbjct: 549 MQNAGFKPDKVTYSIVMEVLGHC-GYLEEAEAVFFEMRQNH 588
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 57/111 (51%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L++ + +A+ F +++++ + D Y+ M+ +LG+ ++ +L ++ K+G P
Sbjct: 357 LKQLQDHSVAVGFFCWLKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQP 416
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ Y +I Y + + +A+ + M+ GC P ++T+ LI AG
Sbjct: 417 NVVTYNRLIHSYGRANYLREALNVFNQMQEMGCEPDRVTYCTLIDIHAKAG 467
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+KPD YS ++ +LG + AE +F E+++ PD VY ++ ++ + G ++KA
Sbjct: 554 FKPDKVTYSIVMEVLGHCGYLEEAEAVFFEMRQNHWVPDEPVYGLLVDLWGKAGNVEKAW 613
Query: 184 ETYETMKASGCTPHKLTFTILI 205
E Y TM +G P+ T L+
Sbjct: 614 EWYHTMLRAGLLPNVPTCNSLL 635
>gi|225457182|ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic [Vitis vinifera]
Length = 869
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 71/138 (51%), Gaps = 5/138 (3%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
D E ++ + +L++F ++++++W KP+ +Y+ MI +LG+ + +E+F E
Sbjct: 112 DFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMIGVLGREGLLEKCQEIFDE 171
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG- 212
+ G+ P +T +I Y + G ++E + MK +P LT+ +I + G
Sbjct: 172 MPSHGVAPSVFSFTALINAYGRNGQYKSSLELLDRMKKERVSPSILTYNTVINSCARGGL 231
Query: 213 -EEELV---AAVRRDCIQ 226
EEL+ A +R + IQ
Sbjct: 232 DWEELLGLFAQMRHEGIQ 249
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD++ YS ++ GK ++ EL E++ G PD Y ++ + Q G I +AM
Sbjct: 285 PDITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGV 344
Query: 186 YETMKASGCTPHKLTFTILI 205
+ M+ +GC P+ T++IL+
Sbjct: 345 FRQMQGAGCVPNAATYSILL 364
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y +I GK A+++ + ++G+ P ++ YT +I Y Q + ++A+
Sbjct: 424 EPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALV 483
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ TM G P T+ LI+ G
Sbjct: 484 AFNTMNEVGSKPTVETYNSLIQMFAKGG 511
Score = 37.0 bits (84), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 37/83 (44%)
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209
LF +++ EG+ D Y ++ + G+ D+A + TM G P T++ L+
Sbjct: 239 LFAQMRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFG 298
Query: 210 NAGEEELVAAVRRDCIQYVEFPE 232
E V+ + ++ FP+
Sbjct: 299 KLNRLEKVSELLKEMESGGSFPD 321
>gi|224112321|ref|XP_002316152.1| predicted protein [Populus trichocarpa]
gi|222865192|gb|EEF02323.1| predicted protein [Populus trichocarpa]
Length = 785
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L + LD A K+F + KE ++P L ++S ++ +GK ++ + +++ E++ G
Sbjct: 269 IPSLAKSGRLDAAFKLFQEM-KERNFRPSLGIFSSLVDSMGKAGRLETSMKVYMEMQGLG 327
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
L P +Y +I Y + G +D A+ ++ MK +G P+ +T++I + +G+ ++
Sbjct: 328 LRPSAIMYVSLIESYTKAGKLDAALRLWDEMKIAGFRPNFGLYTLIIESHAKSGKLDIAM 387
Query: 219 AVRRD 223
++ RD
Sbjct: 388 SIFRD 392
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 68/125 (54%), Gaps = 4/125 (3%)
Query: 81 EGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK 140
+G R ++ L+++ T + +LD AL++++ + K ++P+ LY+ +I K
Sbjct: 324 QGLGLRPSAIMYVSLIESYT---KAGKLDAALRLWDEM-KIAGFRPNFGLYTLIIESHAK 379
Query: 141 NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT 200
+ ++ +A +F +++K G P Y+ ++ ++ G +D AM+ Y +M +G P T
Sbjct: 380 SGKLDIAMSIFRDMEKAGFLPTPSTYSSLLEMHAASGQVDAAMKLYNSMTNAGLRPGLST 439
Query: 201 FTILI 205
+T L+
Sbjct: 440 YTALL 444
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 37/156 (23%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPD--------------------LSLYSD 133
++ + L+ NE D L +F + +++ WY P+ SL+ +
Sbjct: 121 NMTHVVQALKIINESDALLSLFKWAKRQTWYVPNDECYVMLFDGLNQSRDFDGIQSLFDE 180
Query: 134 MILMLGKN-----------KQIAMAEEL---FCELKK---EGLDPDTRVYTEMIGVYLQV 176
M+ K+ K +A AE+L FC KK G DT Y ++ ++L
Sbjct: 181 MVCDSIKSATQFSAYNRVLKYLAKAEKLEVSFCCFKKVQDSGCKIDTETYNILMKLFLNK 240
Query: 177 GMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
G+ KA E YETM+A+ C+ T+ ++I +L +G
Sbjct: 241 GLPYKAFEIYETMEAAHCSLDVSTYELMIPSLAKSG 276
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+S Y MI L K+ ++ A +LF E+K+ P +++ ++ + G ++ +M+ Y
Sbjct: 261 DVSTYELMIPSLAKSGRLDAAFKLFQEMKERNFRPSLGIFSSLVDSMGKAGRLETSMKVY 320
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
M+ G P + + LI + AG +L AA+R
Sbjct: 321 MEMQGLGLRPSAIMYVSLIESYTKAG--KLDAALR 353
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ +LD+A+ +F + K + P S YS ++ M + Q+ A +L+ + GL P
Sbjct: 379 KSGKLDIAMSIFRDMEK-AGFLPTPSTYSSLLEMHAASGQVDAAMKLYNSMTNAGLRPGL 437
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASG 193
YT ++ + ++D A + MKA G
Sbjct: 438 STYTALLTLLAHKKLVDVAAKILLEMKAMG 467
>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Vitis vinifera]
gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LLD L + N L A+++F+++ ++P + +++ +I L K ++I +A ELF L
Sbjct: 454 LLDGLC---KNNHLSEAMELFHYLENH-DFQPSIQIFNCLIDGLCKARKIEIARELFNRL 509
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
EGL+P+ YT MI + G ++ A + + M+ GC P+ +TF L+R
Sbjct: 510 SHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGF 563
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 54/113 (47%)
Query: 122 VWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDK 181
V KP+L Y +I L K+ I +ELF E+K G+ PD Y+ +I G +
Sbjct: 232 VTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEG 291
Query: 182 AMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERF 234
A + M G P+ +TF +LI L AG+ E + + IQ E P+ F
Sbjct: 292 AKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTF 344
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
LT L R+ ++ A +F ++ P+ Y+ ++ L KN ++ A ELF L+
Sbjct: 420 LTGLFREGKVRDAWNLFGEMKVHDL-TPESCTYNILLDGLCKNNHLSEAMELFHYLENHD 478
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
P +++ +I + I+ A E + + G P+ +T+T++I L +G+ E
Sbjct: 479 FQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLE 535
>gi|168023641|ref|XP_001764346.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684498|gb|EDQ70900.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 978
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 61/110 (55%), Gaps = 1/110 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
++ +D AL V++ ++K+ KPD +S ++ G + I A + +KKEGL P
Sbjct: 484 QKGNVDYALLVYDDLKKD-GVKPDEVFFSALVDAAGHAQDIEKAFSIIANMKKEGLKPGA 542
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
VY+ ++GV +G +KA+E Y+ +++SG P TF L+ L A +
Sbjct: 543 VVYSSLMGVCSNLGNWEKALEVYQDIRSSGLQPTVSTFNALMTALCEANQ 592
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R E+D AL+V+ +R E K + Y+ ++ + + A ++ +LKK+G+ PD
Sbjct: 449 RAGEVDRALEVYQNMR-ESNVKGSPACYTAVVHACSQKGNVDYALLVYDDLKKDGVKPDE 507
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
++ ++ I+KA MK G P + ++ L+ N G E V +D
Sbjct: 508 VFFSALVDAAGHAQDIEKAFSIIANMKKEGLKPGAVVYSSLMGVCSNLGNWEKALEVYQD 567
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 5/123 (4%)
Query: 104 RQNELDLALKVFNF-VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG--LD 160
R +L A + + K V KPD +++ +I + + A ++ ++K E +
Sbjct: 377 RAGQLPKAFGAYGIMISKNV--KPDRVIFNTLINACTRAGAVQRAFDVLTDMKAEATPIK 434
Query: 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
PD Y +I + G +D+A+E Y+ M+ S +T ++ G + V
Sbjct: 435 PDHVTYGALISACARAGEVDRALEVYQNMRESNVKGSPACYTAVVHACSQKGNVDYALLV 494
Query: 221 RRD 223
D
Sbjct: 495 YDD 497
>gi|356532886|ref|XP_003535000.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Glycine max]
Length = 485
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
+AL++F+ +R++ +Y+P Y +I++LGK+ Q A ELF + ++G T +YT +
Sbjct: 110 IALELFDMLREQPYYQPREDTYMKLIVLLGKSSQPLRAHELFNSIHEDGCG-STELYTAL 168
Query: 170 IGVYLQVGMIDKAMETY-ETMKASGCTPHKLTFTILIRNLENAGEEELV 217
I + Q ++D+A+ E M C P T++ LI+ L ++ + E+V
Sbjct: 169 IAAFCQNNLVDEALSILDEMMNLPSCQPDIFTYSTLIKALVDSLKFEMV 217
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ N +D AL + + + +PD+ YS +I L + + M E LF ++ K + P+T
Sbjct: 174 QNNLVDEALSILDEMMNLPSCQPDIFTYSTLIKALVDSLKFEMVELLFDKMAKRSIVPNT 233
Query: 164 RVYTEMIGVYLQVGMIDKAMETYET-MKASGCTPHKLTFTILIRNLENAGEEELV 217
++ Y + G D+ + + M+ + C P T +I + G+ +++
Sbjct: 234 YTQNLILSGYGKAGRFDQMEKIVSSMMEGTTCKPDVWTMNTVISVFGDKGQIDIM 288
>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 621
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + + D AL++ +R PD+ Y+ +I LGK +++ A LF E+++ G P
Sbjct: 89 LGKAGQFDEALRLLAEMRDNGCV-PDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVP 147
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
DT Y +I +VG KAME E M+ GC P +T++ LI L GE
Sbjct: 148 DTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGE 199
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ YS +I LGK+ + A +LF E+K+ G PD+ +T ++ + G +D A+E
Sbjct: 182 PDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALEL 241
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+ MK G P +T+ LI G+
Sbjct: 242 LDEMKERGVKPGVVTYNALIAGFGKVGD 269
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ YS +I L K Q+ A ++ +++KEG PDT Y +I + G+++ A
Sbjct: 286 KPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGR 345
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVE 229
++ MK+ GC P +T++ LI L A A V C+ + E
Sbjct: 346 LFDRMKSKGCNPDVVTYSTLITALGKA------ARVESACVLFEE 384
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 1/163 (0%)
Query: 64 IQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVW 123
I + L + +L + +S+ C +T L + ++ A +F + + V
Sbjct: 331 INGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEM-ESVG 389
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+PDL Y +I +LGK Q+ A+ LF E++ +GL PD Y + + G +A
Sbjct: 390 IQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEAR 449
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
+ +E MK SG P T+ L+ L E + + ++ I+
Sbjct: 450 KIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIE 492
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L + R +D AL++ + + KE KP + Y+ +I GK + A L E+
Sbjct: 225 LMDALGKAGR---VDDALELLDEM-KERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEM 280
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
K+ G PD Y+ +I ++ +D+A + + M+ GC P +T+ LI L AG
Sbjct: 281 KRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAG 338
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L R + + AL+V ++ + KP+L Y+ ++ LGK Q A L E++ G
Sbjct: 51 INSLGRAGKWEAALEVVAEMQAK-GCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNG 109
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
PD R Y +I + G + +A + M+ GC P T+ LI L G +
Sbjct: 110 CVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQ 166
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+T L + E A K+F +++ KPD ++ ++ LGK ++ A EL E+K+ G
Sbjct: 191 ITGLGKDGETVKAFKLFQEMKRR-GRKPDSITFTALMDALGKAGRVDDALELLDEMKERG 249
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ P Y +I + +VG + +A + MK +GC P +T++ LI L
Sbjct: 250 VKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGL 299
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L + + + A +F ++ W PD+ YS +I LG+ + A E+ E++ +G
Sbjct: 16 LNALAKAGQCEEAQLLFEELKAAKW-TPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKG 74
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
P+ Y ++ + G D+A+ M+ +GC P T+ LI L AG
Sbjct: 75 CKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAG 128
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+T L + ++LD A +V + KE PD Y+ +I LGK + A LF +K +G
Sbjct: 296 ITGLIKASQLDEACQVLKKMEKE-GCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKG 354
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+PD Y+ +I + ++ A +E M++ G P T+ +I L AG+
Sbjct: 355 CNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQ 409
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ L + L A +F +R E PD Y+ +I LGK + A EL E+++ G
Sbjct: 121 ISTLGKAGRLSEAFTLFAEMR-ERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHG 179
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
PD Y+ +I + G KA + ++ MK G P +TFT L+ L AG
Sbjct: 180 CPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAG 233
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+ ++ L K Q A+ LF ELK PD Y+ +I + G + A+E
Sbjct: 7 PNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEV 66
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
M+A GC P+ T+ L+ L AG+
Sbjct: 67 VAEMQAKGCKPNLWTYNTLVDCLGKAGQ 94
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Query: 102 LRRQNELDLALKVFNFVR-KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD 160
L +D A ++ F K +W P S Y+ +I L K +++ A +LK++G
Sbjct: 509 LTSWGNVDEAHELLQFANSKGLW--PGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGK 566
Query: 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
PD Y+ +I Q G ID A E E M G +++ L+R L++ G
Sbjct: 567 PDIVSYSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRSYSNLVRKLQDWG 618
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+T L + ++D A ++F+ +R + PD+ Y+ + LG+ + A ++F ++K+ G
Sbjct: 401 ITVLGKAGQVDDADRLFSEMRGK-GLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESG 459
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF 201
L PD Y ++ + +D A + + GC L F
Sbjct: 460 LLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKF 502
>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Brachypodium distachyon]
Length = 966
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 53/83 (63%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PD S Y+ +I L + K++ + LF E+K+ G++PD YT +I + + G+I++A
Sbjct: 448 FVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQAR 507
Query: 184 ETYETMKASGCTPHKLTFTILIR 206
++ M++ GC+P+ +T+T L+
Sbjct: 508 SWFDEMRSVGCSPNVVTYTALLH 530
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
++D A +VF + K Y P + Y+ +I + K+ ++ +A ++ E+ + +P+
Sbjct: 657 GKIDNAQEVFLRMTK-CGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVT 715
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
YT MI +VG I+KA+ M+ GC+P+ +T+T LI L G+ +
Sbjct: 716 YTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKAD 765
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ LDLA+KV + + + P++ Y+ MI L K +I A L ++++G P+
Sbjct: 690 KDGRLDLAMKVLSEMLNDSC-NPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNV 748
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
YT +I + G D +++ ++ M + GC P+ +T+ +LI + AG
Sbjct: 749 VTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAG 797
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P+ +Y +I K +I A+E+F + K G P YT +I + G +D AM+
Sbjct: 640 EPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMK 699
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
M C P+ +T+T +I L GE E
Sbjct: 700 VLSEMLNDSCNPNVVTYTAMIDGLSKVGEIE 730
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 57/115 (49%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
+L ++ F + ++V Y + Y + +LG AE L E+ ++ + R+
Sbjct: 115 ELCVRFFLWAERQVGYSHTGACYDALAEILGFEDPARTAERLLREIGEDDREVLRRLLNV 174
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
++ + G+ D+A+E +K G P +T+ L++ L +AG+ E+ V+++
Sbjct: 175 LVRRCCRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKE 229
>gi|168036199|ref|XP_001770595.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678116|gb|EDQ64578.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 743
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
DL+ Y+ +I + G++ +IA E LF ++++EG PD Y MI Y DKA++T+
Sbjct: 639 DLASYNILINIYGRHTKIAEMEALFHKMQEEGFIPDRWTYNTMIRTYGYADYPDKAVDTF 698
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
+ M+ SG P ++T+ +L+ E AG L+ A R
Sbjct: 699 KMMQDSGIMPDRVTYVMLVAAFEKAG--NLLEAAR 731
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL++F + KE +PD YS MI G+ ++ A + F +K+ G+ P + + +I
Sbjct: 204 ALRLFEKM-KEAGLEPDEVTYSCMIGACGRAGKLRDALDYFQAMKRLGIMPASSNFNTLI 262
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+Y + + + MK GCTP T ++R E AG+ + V V
Sbjct: 263 SLYGKARNVVGIVRVLADMKNFGCTPDSQTLDAVVRAYERAGQTKKVVQV 312
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ MI GK A LF ++K+ GL+PD Y+ MIG + G + A++ ++ MK
Sbjct: 188 YNSMITAYGKAGLYEKALRLFEKMKEAGLEPDEVTYSCMIGACGRAGKLRDALDYFQAMK 247
Query: 191 ASGCTPHKLTFTILI 205
G P F LI
Sbjct: 248 RLGIMPASSNFNTLI 262
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD + + G+ +I AE + +++ G+ Y MI Y + G+ +KA+
Sbjct: 148 PDRDNWLKQMNTYGQQGKIEEAEHIMDTMERLGMHLGVVGYNSMITAYGKAGLYEKALRL 207
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERF 234
+E MK +G P ++T++ +I AG+ RD + Y + +R
Sbjct: 208 FEKMKEAGLEPDEVTYSCMIGACGRAGK-------LRDALDYFQAMKRL 249
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 65/162 (40%), Gaps = 20/162 (12%)
Query: 59 LSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFV 118
L EA+ AM+ A + K E +S IC A + + T + R
Sbjct: 340 LQKEALSVFSAMRKAGMAPK-EYMCRSLICACKDAGMFEDATNVFRD------------- 385
Query: 119 RKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM 178
+ P L MI + G + AEELF L+ D Y +I VY++ GM
Sbjct: 386 MQSAGVVPSLETSCTMINVHGLKGDVKQAEELFRSLRSSVSKLDIIAYNVIINVYMRYGM 445
Query: 179 IDKAMETYETM-KASGCTPHKLTFTILIR-----NLENAGEE 214
++A Y+ M + G P T+ ++R NL+ EE
Sbjct: 446 HEEAFRIYKLMEEEDGLLPDSYTYHSMLRMCQKCNLQTQAEE 487
Score = 37.0 bits (84), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 41/85 (48%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ M +LG +Q + +EL ++ +G PD + +I + D A ++ M
Sbjct: 14 YNIMFKILGSRQQWPIIDELLGQMLGDGCVPDDYTFNTLIMSASKADYADYATRAFQMML 73
Query: 191 ASGCTPHKLTFTILIRNLENAGEEE 215
G P +LT+++++ + G+ E
Sbjct: 74 EKGVQPTRLTYSMMMLLYQKNGKVE 98
>gi|317106735|dbj|BAJ53231.1| JHL06P13.11 [Jatropha curcas]
Length = 826
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 60/107 (56%), Gaps = 1/107 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+QN+L AL++F + K+ KP++ ++ +I +N + AE++F E++ G +P+
Sbjct: 564 KQNDLRGALRMFGLMLKKTC-KPNVVTFTSLINGFCRNGDLNRAEKVFEEMRSFGFEPNV 622
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210
YT +IG + + G + KA +E M + C P+ TF L+ L N
Sbjct: 623 VTYTILIGYFCKEGKLTKACFFFEQMLINKCIPNDATFNYLVNGLTN 669
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 17/139 (12%)
Query: 101 ELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD 160
++ R N L LKV F+ P + Y MI K + ++L E+K+ GL
Sbjct: 252 DIERANLLFKELKVKGFL-------PTVKTYGAMINAFCKKGKFEAVDKLLVEMKERGLA 304
Query: 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG-----EEE 215
+++ +I + G +A + M SGC P T+ LI + G EE
Sbjct: 305 VSLQIFNGIIDARFKHGCEIEAADAVRWMIESGCEPDMATYNTLINGSCSKGKVREAEEL 364
Query: 216 LVAAVRRDCIQYVEFPERF 234
L A+RR FP +F
Sbjct: 365 LEHAIRRGL-----FPNKF 378
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 113 KVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGV 172
++FN V + PD YS +I K + A +F + K+ P+ +T +I
Sbjct: 542 RMFNGV-----HSPDEFTYSTIIDGYVKQNDLRGALRMFGLMLKKTCKPNVVTFTSLING 596
Query: 173 YLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ + G +++A + +E M++ G P+ +T+TILI
Sbjct: 597 FCRNGDLNRAEKVFEEMRSFGFEPNVVTYTILI 629
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD++ Y+ +I ++ AEEL + GL P+ YT +I + + G +A E
Sbjct: 339 EPDMATYNTLINGSCSKGKVREAEELLEHAIRRGLFPNKFSYTPLIHAFSKNGEYVRASE 398
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
M G T + + L+ L AGE ++ VR
Sbjct: 399 LLIEMSERGHTLDLIAYGALVHGLVVAGEVDVALTVR 435
>gi|414880311|tpg|DAA57442.1| TPA: hypothetical protein ZEAMMB73_673693 [Zea mays]
Length = 770
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 71/155 (45%), Gaps = 5/155 (3%)
Query: 76 SSKLEEGFQSR---ICRLLKADLLDTLTELRRQNELDLALKVFNFVR--KEVWYKPDLSL 130
+SK+EE Q R I R K DL T LR L + + + K KPD+
Sbjct: 510 ASKMEEAIQLRDDMIKRGFKPDLFTFNTFLRAYCNLGKVEDILHLLDQMKSEGLKPDIVT 569
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y +I K K + A + EL K GL P+ +Y +IG Y + G I A+ +TMK
Sbjct: 570 YGTIIDGYCKAKDVHKANKYLIELIKNGLRPNAVIYNALIGGYGRNGSISDAIGVLDTMK 629
Query: 191 ASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCI 225
+G P +T+ L+ + +AG E + CI
Sbjct: 630 HNGIQPTPITYNSLMYWMCHAGLVEEAKEIFAQCI 664
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
+LDLA KVF +R PD+ Y+ MI L + +I A + EL++ G+ P
Sbjct: 194 GQLDLARKVFGEMRDGNAVAPDVYTYTVMIKALCRAGEIDAAFVMLAELERSGIQPTVVT 253
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
Y ++ + G +++A + M P +TF ILI L
Sbjct: 254 YNVLMDALCRSGRVEEAFQLKGRMVEGRLRPSIVTFGILINGL 296
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKK-EGLDPDTRVYTEMIGVYLQVGMIDKAM 183
P + + ++ LG Q+ +A ++F E++ + PD YT MI + G ID A
Sbjct: 177 SPSIKTCNILVEALGCGGQLDLARKVFGEMRDGNAVAPDVYTYTVMIKALCRAGEIDAAF 236
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ SG P +T+ +L+ L +G E
Sbjct: 237 VMLAELERSGIQPTVVTYNVLMDALCRSGRVE 268
>gi|449507908|ref|XP_004163164.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Cucumis sativus]
Length = 685
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ L R ++ A++VF + KPD+ Y+ +I LGKN + A F E++ +G
Sbjct: 518 ISSLGRVGKVKEAVEVFEELESSDC-KPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKG 576
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
L+PD Y+ +I + + ++ A ++ M GC P+ +T+ IL+ LE AG
Sbjct: 577 LNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLDCLERAG 630
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 1/115 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L + +LD + KVF ++ + PD Y+ MI M GK + + LF E+ +G
Sbjct: 276 LDALAKDEQLDRSYKVFKDMKLK-HCNPDEYTYTIMIRMTGKMGRAEESLALFEEMLTKG 334
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
P+ Y MI + GM+DKA+ + M + C P++ T++I++ L G+
Sbjct: 335 CTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSIILNVLVAEGQ 389
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 51/87 (58%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D +Y+ ++ LGK KQ++ +L+ ++K++G PD Y +I +VG + +A+E +
Sbjct: 475 DTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVF 534
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGE 213
E +++S C P +++ LI L G+
Sbjct: 535 EELESSDCKPDIISYNSLINCLGKNGD 561
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 60/103 (58%), Gaps = 4/103 (3%)
Query: 113 KVFNFVRKEVW---YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
+ FN V E+W Y+ D+ Y+ ++ L K++Q+ + ++F ++K + +PD YT M
Sbjct: 252 RAFN-VYMEMWSNGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIM 310
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
I + ++G ++++ +E M GCTP+ + + +I+ L +G
Sbjct: 311 IRMTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSG 353
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
PD+ YS +I GK ++ MA LF + +G P+ Y ++ + G + ++
Sbjct: 578 NPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLDCLERAGRTAETVD 637
Query: 185 TYETMKASGCTPHKLTFTILIR 206
Y ++ G TP +T+ IL R
Sbjct: 638 LYAKLREQGLTPDSITYAILDR 659
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D Y M+ L + + A EL ++ ++G+ DT +Y ++ ++ + + Y
Sbjct: 440 DRDAYISMLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLY 499
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGE 213
E MK G P T+ ILI +L G+
Sbjct: 500 EKMKQDGPFPDIFTYNILISSLGRVGK 526
>gi|168040538|ref|XP_001772751.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675976|gb|EDQ62465.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 526
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 62/123 (50%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ P++ LY+ +I LG+ +I A + F + E PDTR Y +I + VG +D A
Sbjct: 378 FAPNVHLYNKLIYQLGEAGRINDALKTFERMCSESCYPDTRTYNVVINLLGGVGKVDLAH 437
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVYQKHR 243
+ +E MK GC P+ T+ I++ +L AG +L + R+ + P ++ Q H
Sbjct: 438 QLFEQMKEKGCKPNLQTYNIMVGHLVRAGRYQLGPKLCREMVANHIEPREGALKILQFHE 497
Query: 244 KTQ 246
K
Sbjct: 498 KAS 500
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 100 TELRRQNELDLALKVFNFVRKEVWYK--------PDLSLYSDMILMLGKNKQIAMAEELF 151
T L + +D+ ++V+ E ++ PD Y+ MI +GK I A +LF
Sbjct: 68 TTLVYNSMIDILRTSGDYVQAEKLFRSMNPSSCAPDTITYTMMIDCMGKAGHIQAAFDLF 127
Query: 152 CELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
E+ + G + Y+ +I + G I +A M+ +GC P+ +T+ LI L A
Sbjct: 128 QEMHRMGYKANVITYSSLIRSLCKAGRISEACNLLSGMRINGCNPNDVTYNGLIVGLGGA 187
Query: 212 GEEELVAAVRRDCIQYVEFPE 232
G+ +LV + ++ + P
Sbjct: 188 GQADLVCSYYKEMKSFGLIPN 208
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
Query: 89 RLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAE 148
R+ L + + N+++ +LK F+ + K KP +Y+ MI +L + AE
Sbjct: 31 RVTPTIFLGVIRSYVKANQIEDSLKTFHAMDKYDC-KPTTLVYNSMIDILRTSGDYVQAE 89
Query: 149 ELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+LF + PDT YT MI + G I A + ++ M G + +T++ LIR+L
Sbjct: 90 KLFRSMNPSSCAPDTITYTMMIDCMGKAGHIQAAFDLFQEMHRMGYKANVITYSSLIRSL 149
Query: 209 ENAG 212
AG
Sbjct: 150 CKAG 153
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 96 LDTLTE-LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC-E 153
L+ LT L ++ +L+ A+ V F+ K D + ++ +L K + E++ E
Sbjct: 317 LNALTNSLVKEEKLEAAIDVVRFINKH-RIGDDAYAHERLVDLLCKTHRF---EDVISQE 372
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
L K+G P+ +Y ++I + G I+ A++T+E M + C P T+ ++I L G+
Sbjct: 373 LPKQGFAPNVHLYNKLIYQLGEAGRINDALKTFERMCSESCYPDTRTYNVVINLLGGVGK 432
Query: 214 EEL 216
+L
Sbjct: 433 VDL 435
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 7/138 (5%)
Query: 80 EEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
++GF + L L+ L E R N+ ALK F + E Y PD Y+ +I +LG
Sbjct: 375 KQGFAPNV--HLYNKLIYQLGEAGRIND---ALKTFERMCSESCY-PDTRTYNVVINLLG 428
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
++ +A +LF ++K++G P+ + Y M+G ++ G + M A+ P +
Sbjct: 429 GVGKVDLAHQLFEQMKEKGCKPNLQTYNIMVGHLVRAGRYQLGPKLCREMVANHIEPREG 488
Query: 200 TFTIL-IRNLENAGEEEL 216
IL + G +EL
Sbjct: 489 ALKILQFHEKASGGHDEL 506
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%)
Query: 122 VWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDK 181
+ YK ++ YS +I L K +I+ A L ++ G +P+ Y +I G D
Sbjct: 133 MGYKANVITYSSLIRSLCKAGRISEACNLLSGMRINGCNPNDVTYNGLIVGLGGAGQADL 192
Query: 182 AMETYETMKASGCTPHKLTFTILIRNLENAGE 213
Y+ MK+ G P+ T ++I +L G+
Sbjct: 193 VCSYYKEMKSFGLIPNLPTQAVVISSLVRIGK 224
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 42/84 (50%)
Query: 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM 189
+YS M+ +LG ++ L ++K++G ++ +I Y++ I+ +++T+ M
Sbjct: 1 MYSTMLRLLGDARRFDYLWALLDDMKRDGHRVTPTIFLGVIRSYVKANQIEDSLKTFHAM 60
Query: 190 KASGCTPHKLTFTILIRNLENAGE 213
C P L + +I L +G+
Sbjct: 61 DKYDCKPTTLVYNSMIDILRTSGD 84
>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Glycine max]
Length = 564
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 67/126 (53%), Gaps = 5/126 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
++ +L + RR NE A F+ ++ ++PD+ +Y+ ++ + I+ AEE+F ++
Sbjct: 254 VISSLCKKRRANE---AQSFFDSLKHR--FEPDVVVYTSLVHGWCRAGDISKAEEVFSDM 308
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
K G+ P+ Y+ +I + G I +A + + M +GC P+ +TF L+R AG
Sbjct: 309 KMAGIKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRT 368
Query: 215 ELVAAV 220
E V V
Sbjct: 369 EKVLKV 374
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 7/116 (6%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R ++ A +VF+ + K KP++ YS +I L + QI A ++F E+ G DP+
Sbjct: 294 RAGDISKAEEVFSDM-KMAGIKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNA 352
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI------RNLENAGE 213
+ ++ V+++ G +K ++ Y MK GC +++ +I NLE A +
Sbjct: 353 VTFNSLMRVHVKAGRTEKVLKVYNQMKRLGCPADTISYNFIIESHCRDENLEEAAK 408
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 51/98 (52%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
+L FN+ + Y++M+ + GK +Q +A + +K G++ ++ ++
Sbjct: 161 SLAFFNWSSSLDGFPASPEPYNEMLDLAGKLRQFDLAWHVIDLMKSRGVEITVHTFSALV 220
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
Y++ G+ +A+ + M+ GCTP + F+I+I +L
Sbjct: 221 RRYVRAGLAAEAVHAFNRMEDYGCTPDMVAFSIVISSL 258
Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 112 LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIG 171
LKV+N + K + D Y+ +I +++ + A ++ + K+G+ P+ + + G
Sbjct: 372 LKVYNQM-KRLGCPADTISYNFIIESHCRDENLEEAAKILNLMVKKGVAPNASTFNFIFG 430
Query: 172 VYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
++ ++ A Y MK C P+ LT+ IL+R + ++V ++++
Sbjct: 431 CIAKLHDVNGAHRMYARMKELNCQPNTLTYNILMRMFAESRSTDMVLKMKKE 482
>gi|449465242|ref|XP_004150337.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Cucumis sativus]
Length = 690
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ +I LGKN + A F E++ +GL+PD Y+ +I + + ++ A
Sbjct: 548 KPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARS 607
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
++ M GC P+ +T+ IL+ LE AG
Sbjct: 608 LFDRMITQGCCPNIVTYNILLDCLERAG 635
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 1/115 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L + +LD + KVF ++ + PD Y+ MI M GK + + LF E+ +G
Sbjct: 281 LDALAKDEQLDRSYKVFKDMKLK-HCNPDEYTYTIMIRMTGKMGRAEESLALFEEMLTKG 339
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
P+ Y MI + GM+DKA+ + M + C P++ T++I++ L G+
Sbjct: 340 CTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSIILNVLVAEGQ 394
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 51/87 (58%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D +Y+ ++ LGK KQ++ +L+ ++K++G PD Y +I +VG + +A+E +
Sbjct: 480 DTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVF 539
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGE 213
E +++S C P +++ LI L G+
Sbjct: 540 EELESSDCKPDIISYNSLINCLGKNGD 566
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 60/103 (58%), Gaps = 4/103 (3%)
Query: 113 KVFNFVRKEVW---YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
+ FN V E+W Y+ D+ Y+ ++ L K++Q+ + ++F ++K + +PD YT M
Sbjct: 257 RAFN-VYMEMWSKGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIM 315
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
I + ++G ++++ +E M GCTP+ + + +I+ L +G
Sbjct: 316 IRMTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSG 358
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
PD+ YS +I GK ++ MA LF + +G P+ Y ++ + G + ++
Sbjct: 583 NPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLDCLERAGRTAETVD 642
Query: 185 TYETMKASGCTPHKLTFTILIR 206
Y ++ G TP +T+ IL R
Sbjct: 643 LYAKLREQGLTPDSITYAILDR 664
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D Y M+ L + + A EL ++ ++G+ DT +Y ++ ++ + + Y
Sbjct: 445 DRDAYISMLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLY 504
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGE 213
E MK G P T+ ILI +L G+
Sbjct: 505 EKMKQDGPFPDIFTYNILISSLGRVGK 531
>gi|168033824|ref|XP_001769414.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679334|gb|EDQ65783.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 410
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 5/103 (4%)
Query: 103 RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
RRQ AL+VF F+++ + Y+ +I +LG+ ++ +A E+F + K G+ P
Sbjct: 10 RRQ-----ALQVFRFLQEHLEYELKEHNCVTIISILGREGKLGLAREIFEGMSKAGVAPS 64
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
YT ++ Y + G++ +A +E MK GC+P+ LT+ LI
Sbjct: 65 VHAYTALLSGYAKQGLLKEAWALFEAMKEKGCSPNVLTYNTLI 107
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL Y+ +I M G+ A AE +F E++++G PD Y M+ Y + +A +
Sbjct: 239 PDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYSKWSRRGRARDL 298
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+TMK +GCTP T+ IL+ AG
Sbjct: 299 LKTMKRAGCTPDLWTYNILLDAAGKAG 325
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 64/133 (48%), Gaps = 4/133 (3%)
Query: 89 RLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAE 148
R+ +LD ++ R+ LK K PDL Y+ ++ GK + A
Sbjct: 276 RVTYNTMLDAYSKWSRRGRARDLLKTM----KRAGCTPDLWTYNILLDAAGKAGSASEAM 331
Query: 149 ELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
++F ELK G P+ ++ +I +Y ++G ++A + M+A+GC P+ + L+ +
Sbjct: 332 QIFHELKAAGHSPNLVSFSALINMYGRLGYFEEAERAWVEMRATGCVPNATAYCGLMNSY 391
Query: 209 ENAGEEELVAAVR 221
+ G +++ +R
Sbjct: 392 SHHGMYKVLCCIR 404
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+ MI LG++ ++ A ELF E+K+ G P++ Y ++ Y + G +KAM
Sbjct: 169 PNVISYTTMINSLGRSGRLDEAVELFEEMKELGRSPNSWTYNSLLKAYAREGRYEKAMCL 228
Query: 186 YETMKASGCTPHKLTFTILI 205
+ M+ GC P T+ +I
Sbjct: 229 FVGMEDEGCIPDLYTYNTVI 248
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L R LD A+++F + KE+ P+ Y+ ++ + + A LF ++ EG
Sbjct: 178 INSLGRSGRLDEAVELFEEM-KELGRSPNSWTYNSLLKAYAREGRYEKAMCLFVGMEDEG 236
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
PD Y +I + + G+ +A + M+ GCTP ++T+ ++
Sbjct: 237 CIPDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTML 283
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%)
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209
LF E+K+ G+ P+ Y M+ + + + D A + + MKA C P+ +++T +I +L
Sbjct: 123 LFEEMKQAGVQPNDITYNCMVNACVCLSLFDTASQILKEMKAVNCLPNVISYTTMINSLG 182
Query: 210 NAG 212
+G
Sbjct: 183 RSG 185
Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%)
Query: 147 AEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
A ++ E+K P+ YT MI + G +D+A+E +E MK G +P+ T+ L++
Sbjct: 155 ASQILKEMKAVNCLPNVISYTTMINSLGRSGRLDEAVELFEEMKELGRSPNSWTYNSLLK 214
Query: 207 NLENAGEEE 215
G E
Sbjct: 215 AYAREGRYE 223
>gi|384251704|gb|EIE25181.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
Length = 905
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 3/116 (2%)
Query: 99 LTELRRQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
++ + +LD ++VF V K + + YS +I K Q +A ELF E+ E
Sbjct: 357 ISAYGKAGQLDKVMEVFQEMVHKGC--ERSVITYSSLISACEKAGQWELALELFNEMAGE 414
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
G P+T Y +I Q +KA E +E M+ GCTP +TFT LI + E G+
Sbjct: 415 GCIPNTVTYNSLITACAQGAQWEKASEVFEQMQKGGCTPDVVTFTALISSYEKGGQ 470
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ + + +LAL++FN + E P+ Y+ +I + Q A E+F +++K G
Sbjct: 392 ISACEKAGQWELALELFNEMAGEGCI-PNTVTYNSLITACAQGAQWEKASEVFEQMQKGG 450
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
PD +T +I Y + G +A+ YE M+ C P + F +I L G
Sbjct: 451 CTPDVVTFTALISSYEKGGQWRRALGAYEQMRLQRCKPDAIVFNAIIDTLWETG 504
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
+KV ++ E +P L Y+ +I+ Q A ++ + EG P+ Y +I
Sbjct: 299 GIKVLTLMKTEG-VEPVLRTYNTLIIACNMCGQPREAMAVYKRMLDEGYSPNATTYNALI 357
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
Y + G +DK ME ++ M GC +T++ LI E AG+ EL
Sbjct: 358 SAYGKAGQLDKVMEVFQEMVHKGCERSVITYSSLISACEKAGQWELA 404
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y P+ + Y+ +I GK Q+ E+F E+ +G + Y+ +I + G + A+
Sbjct: 346 YSPNATTYNALISAYGKAGQLDKVMEVFQEMVHKGCERSVITYSSLISACEKAGQWELAL 405
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
E + M GC P+ +T+ LI + E + V
Sbjct: 406 ELFNEMAGEGCIPNTVTYNSLITACAQGAQWEKASEV 442
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
LAL +N +R++ P++ Y+ +I + GK ++ +K EG++P R Y +
Sbjct: 263 LALDTYNHMRQDG-ACPNVVTYNTLIDVYGKMGLWEQGIKVLTLMKTEGVEPVLRTYNTL 321
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
I G +AM Y+ M G +P+ T+ LI AG+ + V V ++ +
Sbjct: 322 IIACNMCGQPREAMAVYKRMLDEGYSPNATTYNALISAYGKAGQLDKVMEVFQEMVH 378
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 83 FQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKP-----DLSLYSDMILM 137
F SR LL DL R A+++F ++R P D+ Y+ MI M
Sbjct: 167 FDSRATALLLKDLSKAGLGFR-------AVEIFEWLRNLDANHPLASLCDVYTYTAMISM 219
Query: 138 LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH 197
+ + A +L E++ ++ + YT ++ V ++ G A++TY M+ G P+
Sbjct: 220 CIYQQDVDRAMDLAKEMRVRNIERNVHTYTALMNVCIKCGNCPLALDTYNHMRQDGACPN 279
Query: 198 KLTFTILI 205
+T+ LI
Sbjct: 280 VVTYNTLI 287
>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Brachypodium distachyon]
Length = 1102
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R L+ A+ +FN + K P+L Y+ +IL LGK + A A +++ EL K G P
Sbjct: 996 LGRSGRLEEAVSLFNDMEKS-GIAPNLYTYNSLILYLGKEGKAAEAGKMYEELLKNGWKP 1054
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ Y +IG Y G D A +Y M GC P+ T+ L L
Sbjct: 1055 NVFTYNALIGGYSVSGSTDNAFASYGQMIVGGCPPNSSTYMQLPNQL 1101
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 85/184 (46%), Gaps = 19/184 (10%)
Query: 67 VHAMKLAKSSSKLEEGFQSRICRLLKAD------LLDTLTELRRQNELDLALKVFNFVRK 120
++ +LA ++ K+ E FQ+ + + + D L+ L R N+ +L F +
Sbjct: 923 LNGYRLAGNTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLND---SLSYFRQL-T 978
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E+ +PDL Y+ +I LG++ ++ A LF +++K G+ P+ Y +I + G
Sbjct: 979 ELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLILYLGKEGKAA 1038
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEEE---------LVAAVRRDCIQYVEFP 231
+A + YE + +G P+ T+ LI +G + +V + Y++ P
Sbjct: 1039 EAGKMYEELLKNGWKPNVFTYNALIGGYSVSGSTDNAFASYGQMIVGGCPPNSSTYMQLP 1098
Query: 232 ERFL 235
+ L
Sbjct: 1099 NQLL 1102
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ + ++ L K+ ++ MA+ +F ELK G+ PD YT MI + D+AM+
Sbjct: 459 PDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYTMMIKCCSKASNADEAMKV 518
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ M + C P L LI L AG
Sbjct: 519 FSEMIETRCVPDVLAVNSLIDTLYKAG 545
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 56/109 (51%), Gaps = 9/109 (8%)
Query: 121 EVW-------YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY 173
E+W Y ++ Y+ ++ L + ++ A ++F ++K++G++P Y +I +
Sbjct: 342 EIWNAMKADGYNDNVVAYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGF 401
Query: 174 LQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
L+ ++ A+E + M G TP+ T+ + I +GE + A++R
Sbjct: 402 LKADRLNHALELFNHMNIHGPTPNGYTYVLFINYYGKSGES--LKAIKR 448
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 91/197 (46%), Gaps = 24/197 (12%)
Query: 45 LRDANKKPMWRSRVLSSEAIQAVHAMKLAKS-SSKLEEG-FQSRICRLLKADLLDT---- 98
L D P+ R S +A++A +K +S L+ G + + IC L+ +L+D
Sbjct: 739 LDDFFLSPLIRHLCKSKKALEAHELVKKFESLGVSLKTGSYNALICGLVDENLIDVAEGL 798
Query: 99 LTELRRQ-------------NELDLALKVFNF--VRKEV---WYKPDLSLYSDMILMLGK 140
+E++R + + ++++ + V+KE+ Y+ Y+ +I L K
Sbjct: 799 FSEMKRLGCDPDEFTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLVK 858
Query: 141 NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT 200
+K + A +L+ +L EG P Y ++ L+ G I+ A + ++ M GC P++
Sbjct: 859 SKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAI 918
Query: 201 FTILIRNLENAGEEELV 217
+ IL+ AG E V
Sbjct: 919 YNILLNGYRLAGNTEKV 935
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + YS ++L GK + + L E++ G+ P+ YT I V Q G ++A +
Sbjct: 215 PSVRTYSVLMLAFGK-RDVETVVWLLREMEDHGVKPNVYSYTICIRVLGQAGRFEEAYKI 273
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ M+ GC P +T T+LI+ L +AG
Sbjct: 274 LQKMEDEGCKPDVVTNTVLIQILCDAG 300
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 71/148 (47%), Gaps = 12/148 (8%)
Query: 79 LEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMI--- 135
+ EGF C LLD L + +++ A +F+ + + KP+ ++Y+ ++
Sbjct: 873 MSEGFSPTPCTY--GPLLDGLL---KDGKIEDAEDLFDEML-DYGCKPNRAIYNILLNGY 926
Query: 136 LMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCT 195
+ G +++ ELF + +G++PD + YT +IG G ++ ++ + + G
Sbjct: 927 RLAGNTEKVC---ELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLE 983
Query: 196 PHKLTFTILIRNLENAGEEELVAAVRRD 223
P +T+ +LI L +G E ++ D
Sbjct: 984 PDLITYNLLIHGLGRSGRLEEAVSLFND 1011
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD Y ++ G N E++ +K +G + + YT ++ QVG +D+A +
Sbjct: 318 KPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYTAVVDALCQVGRVDEASD 377
Query: 185 TYETMKASGCTPHKLTFTILIRNLENA 211
++ MK G P + ++ LI A
Sbjct: 378 VFDQMKQKGIEPQQYSYNSLISGFLKA 404
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ Y+ I +LG+ + A ++ +++ EG PD T +I + G + A +
Sbjct: 248 KPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILCDAGRVSDAKD 307
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+ MKAS P ++T+ L+ + G+ V +
Sbjct: 308 VFWKMKASDQKPDRVTYITLLDKCGDNGDSRSVIEI 343
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
++D L ++ R +E A VF+ ++++ +P Y+ +I K ++ A ELF +
Sbjct: 362 VVDALCQVGRVDE---ASDVFDQMKQK-GIEPQQYSYNSLISGFLKADRLNHALELFNHM 417
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
G P+ Y I Y + G KA++ YE MK+ G P + ++ +L +G
Sbjct: 418 NIHGPTPNGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSG 475
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 6/130 (4%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+DTL + R NE A K+F+ + KE+ P Y+ ++ LG+ ++ L E+
Sbjct: 537 LIDTLYKAGRGNE---AWKIFHEL-KEMNLDPTDCTYNTLLAGLGREGKVKEVMHLLEEM 592
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
P+ Y ++ + G ++ A+ M GC P ++ + L E+
Sbjct: 593 NSNSYPPNLITYNTVLDCLCKNGEVNYALGMLYNMTMKGCMPDLSSYNTALHGL--VKED 650
Query: 215 ELVAAVRRDC 224
L A R C
Sbjct: 651 RLTEAFRIFC 660
>gi|224133318|ref|XP_002321537.1| predicted protein [Populus trichocarpa]
gi|222868533|gb|EEF05664.1| predicted protein [Populus trichocarpa]
Length = 834
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P + Y+ +I G+ + A E+F +++K G +PD Y +I ++ + G ++ AME
Sbjct: 370 QPTVVTYNRLIHSYGRANYLNDAVEVFNQMQKAGCEPDRVTYCTLIDIHAKAGFLNFAME 429
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDC 224
Y+ M+A+G +P T++++I L AG L AA + C
Sbjct: 430 MYQRMQAAGLSPDTFTYSVMINCLGKAG--HLAAADKLFC 467
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
PD YS MI LGK +A A++LFCE+ ++G P+ Y MI + + A++
Sbjct: 440 SPDTFTYSVMINCLGKAGHLAAADKLFCEMIEQGCVPNLVTYNIMIALQAKARNYQNALK 499
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
Y M+ +G P K+T++I++ L ++G
Sbjct: 500 LYRDMQNAGFEPDKVTYSIVMEVLGHSG 527
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 7/114 (6%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R N L+ A++VFN ++K +PD Y +I + K + A E++ ++ GL PDT
Sbjct: 385 RANYLNDAVEVFNQMQK-AGCEPDRVTYCTLIDIHAKAGFLNFAMEMYQRMQAAGLSPDT 443
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI------RNLENA 211
Y+ MI + G + A + + M GC P+ +T+ I+I RN +NA
Sbjct: 444 FTYSVMINCLGKAGHLAAADKLFCEMIEQGCVPNLVTYNIMIALQAKARNYQNA 497
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++PD YS ++ +LG + + AE +F E+K++ PD VY ++ ++ + G ++KA
Sbjct: 509 FEPDKVTYSIVMEVLGHSGYLDEAEAIFSEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAW 568
Query: 184 ETYETMKASGCTPHKLTFTILI 205
E Y+ M +G P+ T L+
Sbjct: 569 EWYQAMLHAGLCPNVPTCNSLL 590
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+L Y+ MI + K + A +L+ +++ G +PD Y+ ++ V G +D+A
Sbjct: 476 PNLVTYNIMIALQAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHSGYLDEAEAI 535
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ MK P + + +L+ AG E
Sbjct: 536 FSEMKRKNWVPDEPVYGLLVDLWGKAGNVE 565
>gi|224102855|ref|XP_002312829.1| predicted protein [Populus trichocarpa]
gi|222849237|gb|EEE86784.1| predicted protein [Populus trichocarpa]
Length = 734
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 1/107 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ E +Q +L A + + + KE+ KP +++Y +I L + ++I+ AE LF ++++G
Sbjct: 461 VNEYCKQEDLASAFGILDQM-KEMGPKPSVAIYDCIIACLSQQRRISEAETLFHRMRRDG 519
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
LDPD Y MI Y + G DKA+ +E M + P ++T LI
Sbjct: 520 LDPDEVAYMTMINAYARDGRGDKALNLFEKMIENAIQPSSYSYTSLI 566
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
DLA K+ + K + P L LY+ +I + A F ++KEG+ P+ +T
Sbjct: 572 DLASKLMQKI-KGTRFMPYLYLYNIIIFGFCWANMMQDAHHQFKLMQKEGIHPNA-TFTI 629
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+IG + + G ID+A+ + M A GCTP + ++ L+++L +G+
Sbjct: 630 LIGAHGRAGEIDRAIGLFNRMSADGCTPDRCAYSTLLKSLCESGD 674
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D +Y+ ++ GKNK++ MA ++ + K+G DPD Y +I +L++G+ DKA +
Sbjct: 267 DKVMYTSLMNAHGKNKKMKMAMRVYFRMLKKGCDPDICTYNTLIHGFLKMGLFDKAWALW 326
Query: 187 ETMKASGCTPHK 198
M SG P++
Sbjct: 327 SLMSDSGIQPNE 338
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L Q + A++VF+ + K P L ++ + L K + AE +F E++ +G
Sbjct: 204 INGLCHQRYVGEAIQVFDIMCKRTGSPPTLHMFKTLFFGLCKAGWLVEAELVFEEMEVQG 263
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
D +YT ++ + + + AM Y M GC P T+ LI G
Sbjct: 264 FFVDKVMYTSLMNAHGKNKKMKMAMRVYFRMLKKGCDPDICTYNTLIHGFLKMG 317
>gi|255073313|ref|XP_002500331.1| predicted protein [Micromonas sp. RCC299]
gi|226515594|gb|ACO61589.1| predicted protein [Micromonas sp. RCC299]
Length = 709
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 51/86 (59%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
++ ++ +I G +KQ+ AEE F + GL P YT ++ ++VG +D+A + +
Sbjct: 185 EIKFFNRIIKDFGNDKQMGFAEEAFRRIGDAGLSPTVYSYTNLLNACVRVGELDRARKVW 244
Query: 187 ETMKASGCTPHKLTFTILIRNLENAG 212
+ M A+G P+++T+T+L++ L G
Sbjct: 245 DDMIAAGVDPNEVTYTVLVKGLAQDG 270
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 52/106 (49%), Gaps = 10/106 (9%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + Y++++ + ++ A +++ ++ G+DP+ YT ++ Q G++ +A T
Sbjct: 219 PTVYSYTNLLNACVRVGELDRARKVWDDMIAAGVDPNEVTYTVLVKGLAQDGLLAEAART 278
Query: 186 YETMKA------SGCTPHKLTFTILIRN----LENAGEEELVAAVR 221
M A G P+ TF+ L+RN + +E +AA+R
Sbjct: 279 VRDMTAQSRAGVEGVAPNVRTFSTLLRNCVRHADPGVADECIAAMR 324
>gi|297806669|ref|XP_002871218.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317055|gb|EFH47477.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1029
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 60/107 (56%)
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
LA++ FN+V+ + + + +Y+ M+ + G+ + + M +EL E++K D D R +T +
Sbjct: 170 LAMRFFNWVKLKDGFSHRVGIYNTMLSIAGEARNLDMVDELVKEMEKHACDKDIRTWTIL 229
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
I VY + I K + +E M+ SG + I+IR+L AG +L
Sbjct: 230 ISVYGKAKKIGKGLLVFEKMRKSGFELDAAAYNIMIRSLCIAGRGDL 276
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L ++ +L AL N + KE+ KP + +Y+ +I+ K KQ E ++K+E +P
Sbjct: 862 LLQRGDLHKALDKVNSM-KEIGIKPGVHVYTSLIVHFFKEKQFEKVLETCHKMKEESCEP 920
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
YT MI Y+ +G +++A + + ++ G +P T++ I L AG+ E
Sbjct: 921 SVVTYTAMICGYMSLGKVEEAWKAFRNIEEKGTSPDFKTYSKFINCLCQAGKSE 974
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 45/101 (44%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE +P + Y+ MI ++ A + F ++++G PD + Y++ I Q G
Sbjct: 914 KEESCEPSVVTYTAMICGYMSLGKVEEAWKAFRNIEEKGTSPDFKTYSKFINCLCQAGKS 973
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+ A++ M G P + F + L G+++L V
Sbjct: 974 EDALKLLSEMLDKGIAPSTINFRTVFYGLNREGKQDLARIV 1014
Score = 37.0 bits (84), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D + ++ L + ++ A E+ +K+ LD D+ VY +I YL+ + KA+E +
Sbjct: 362 DAKYFEILVKGLCRANRMVDALEIVDIMKRRKLD-DSNVYGIIISGYLRQNDVSKALEQF 420
Query: 187 ETMKASGCTPHKLTFTILIRNL 208
E +K SG P T+T +++ L
Sbjct: 421 EIIKKSGRPPRVSTYTEIMQQL 442
>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
Length = 1115
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Query: 87 ICRLLKAD---LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ 143
+CR + D L+ + L + + +A VF KE+ KP L +Y+ +I +
Sbjct: 746 VCRAICKDDSVLIPIIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHN 805
Query: 144 IAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTI 203
+ +A LF E+K G PDT Y +I + + G I++ + Y+ M GC P+ +T+ +
Sbjct: 806 VEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNM 865
Query: 204 LIRNL 208
+I NL
Sbjct: 866 VISNL 870
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K+ PDL Y+ MI LG++++ A LF E++ G+ PD Y +I VGMI
Sbjct: 992 KQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMI 1051
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
++A + YE ++ G P+ T+ LIR +G EL + +
Sbjct: 1052 EEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYK 1094
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ ++D A+K+ + + K V +PD+ + + +I L K ++ A ++FC +++ L P
Sbjct: 521 KVGQVDEAIKLLSEMSK-VQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTV 579
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
Y ++ + G I KA++ +E+M GC+P+ +TF L+ L E +L
Sbjct: 580 VTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDL 632
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 102 LRRQNELDLALKVFNFVRKEVWY--KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGL 159
L + LD A ++F+ + V Y +P+ ++Y+ ++ GK + A E F + KEG+
Sbjct: 905 LLKSGRLDDAHEMFDGM---VHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGI 961
Query: 160 DPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
PD + YT ++ + G +D A+ +E +K +G P + + ++I L
Sbjct: 962 RPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGL 1010
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP L +S +++ GK + I L E++ GL P+ YT I V + G ID+A
Sbjct: 226 KPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYR 285
Query: 185 TYETMKASGCTPHKLTFTILIRNLENA 211
+ M GC P +T+T+LI L A
Sbjct: 286 IMKRMDDDGCGPDVVTYTVLIDALCTA 312
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 129 SLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYET 188
SLYS L + ++ A+ +F ELK GL PD+ Y M+ Y +VG +D+A++
Sbjct: 480 SLYS-----LAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSE 534
Query: 189 MKASGCTPHKLTFTILIRNLENAGEEE 215
M C P + LI L AG E
Sbjct: 535 MSKVQCEPDVIVINSLIDTLYKAGRVE 561
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 82/197 (41%), Gaps = 22/197 (11%)
Query: 31 PSGKKIQALTVTCGLRDANKKPM-----WRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQS 85
PS K AL V G R K M S L +++ K++E +
Sbjct: 227 PSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAY-- 284
Query: 86 RICRLLKAD-----------LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDM 134
RI + + D L+D L R+ LD A+ +F + K +KPD Y +
Sbjct: 285 RIMKRMDDDGCGPDVVTYTVLIDALCTARK---LDDAMCLFTKM-KSSSHKPDKVTYVTL 340
Query: 135 ILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGC 194
+ + E+++ E++ +G PD +T ++ + G I++A + +TM+ G
Sbjct: 341 LDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGV 400
Query: 195 TPHKLTFTILIRNLENA 211
P+ T+ LI L A
Sbjct: 401 LPNLHTYNTLISGLLRA 417
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R ++D A ++ + + PD+ Y+ +I L +++ A LF ++K P
Sbjct: 274 LGRDGKIDEAYRIMKRMDDD-GCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKP 332
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
D Y ++ + G +DK + + M+A G P +TFTIL+ L AG
Sbjct: 333 DKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAG 383
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL Y+ +IL LG I A +++ EL+ GL P+ Y +I Y G + A
Sbjct: 1033 PDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGI 1092
Query: 186 YETMKASGCTPHKLTFTIL 204
Y+ M GC P+ TF L
Sbjct: 1093 YKKMMVGGCDPNTGTFAQL 1111
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L++ L + R NE A + + +RK+ P+L Y+ +I L + ++ A +LF +
Sbjct: 375 LVNALCKAGRINE---AFDLLDTMRKQ-GVLPNLHTYNTLISGLLRANRLDDALDLFSNM 430
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH 197
+ G++P Y +I + + G KA+ET+E MKA G P+
Sbjct: 431 ESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPN 473
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ I +LG++ +I A + + +G PD YT +I +D AM
Sbjct: 261 RPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMC 320
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+ MK+S P K+T+ L+ + G + V +
Sbjct: 321 LFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKI 356
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y PD+ ++ ++ L K +I A +L ++K+G+ P+ Y +I L+ +D A+
Sbjct: 365 YAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDAL 424
Query: 184 ETYETMKASGCTPHKLTFTILI 205
+ + M++ G P T+ +LI
Sbjct: 425 DLFSNMESLGVEPTAYTYILLI 446
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
+D A + F + KE +PDL Y+ ++ +L ++ A F +LK+ GLDPD
Sbjct: 944 GHVDTACEFFKRMVKE-GIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVA 1002
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
Y MI + ++A+ + M+ G P T+ LI NL G
Sbjct: 1003 YNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVG 1049
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 8/148 (5%)
Query: 61 SEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRK 120
S+ Q A+KL SK+ Q ++ L+DTL + R E A ++F + +
Sbjct: 520 SKVGQVDEAIKLLSEMSKV----QCEPDVIVINSLIDTLYKAGRVEE---AWQMFCRM-E 571
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E+ P + Y+ ++ LGK QI A +LF + G P+T + ++ + +D
Sbjct: 572 EMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVD 631
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNL 208
A++ + M C P LTF +I
Sbjct: 632 LALKMFYKMTTMNCRPDVLTFNTIIHGF 659
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ +I GK+ +I +L+ E+ G P+T Y +I ++ +DKAM+
Sbjct: 823 PDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDL 882
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
Y + + +P TF LI L +G
Sbjct: 883 YYNLVSGDFSPTPCTFGPLIDGLLKSG 909
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 10/126 (7%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP+ Y+ +I L K+ ++ A +L+ L P + +I L+ G +D A E
Sbjct: 857 KPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHE 916
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVYQKHRK 244
++ M GC P+ + IL+ G V C EF +R ++E + K
Sbjct: 917 MFDGMVHYGCRPNSAIYNILVNGYGKLGH------VDTAC----EFFKRMVKEGIRPDLK 966
Query: 245 TQVDLV 250
+ LV
Sbjct: 967 SYTILV 972
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 96 LDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELK 155
L +L E+ R E A +FN + K PD Y+ M+ K Q+ A +L E+
Sbjct: 481 LYSLAEMGRLGE---AKAMFNEL-KSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMS 536
Query: 156 KEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
K +PD V +I + G +++A + + M+ P +T+ IL+ L G+
Sbjct: 537 KVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQ 594
>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 50/91 (54%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP L YS +++ LGK + M L E++ GL P+ +T I V + G ID+A E
Sbjct: 224 KPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYE 283
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ M GC P +T+T+LI L NAG+ E
Sbjct: 284 IFRRMDDEGCGPDLVTYTVLIDALCNAGQLE 314
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R ++D A ++F + E PDL Y+ +I L Q+ A+ELF ++K G P
Sbjct: 272 LGRAGKIDEAYEIFRRMDDE-GCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKP 330
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
D +Y ++ + G +D E + M+A G P +TFTIL+
Sbjct: 331 DQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILV 374
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD Y+ +I L K+ + A + F +L P R Y +I +VG +++AM
Sbjct: 855 KPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMR 914
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+E M GC P+ F ILI G+ E
Sbjct: 915 LFEEMSDYGCKPNCAIFNILINGYGKIGDTE 945
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
+D AL FN + K PD Y+ +I LGK++++ A L+ E++ G+ PD Y
Sbjct: 979 VDEALYYFNEL-KSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYN 1037
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
++ GM+++A YE ++ +G P T+ LIR
Sbjct: 1038 SLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIR 1076
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ ++ I +LG+ +I A E+F + EG PD YT +I G ++ A E
Sbjct: 259 RPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKE 318
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
+ MKA+G P ++ + L+ + G+
Sbjct: 319 LFVKMKANGHKPDQVIYITLLDKFNDFGD 347
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 13/118 (11%)
Query: 96 LDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELK 155
LDT E Q E D Y PD+ ++ ++ +L K + A F ++
Sbjct: 348 LDTFKEFWSQMEAD-------------GYMPDVVTFTILVDVLCKARDFDEAFATFDVMR 394
Query: 156 KEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
K+G+ P+ Y +I L+ G I+ A++ TM++ G P T+ I I +GE
Sbjct: 395 KQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGE 452
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L + ++ AL ++N +R PDL Y+ ++L LG + A+ ++ EL+ G
Sbjct: 1005 INGLGKSQRMEEALALYNEMRNR-GIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAG 1063
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTIL 204
L+PD Y +I Y + A Y+ M GC P+ T+ L
Sbjct: 1064 LEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L + R + D A F+ +RK+ P+L Y+ +I L + +I A +L +
Sbjct: 373 LVDVLCKAR---DFDEAFATFDVMRKQ-GILPNLHTYNTLICGLLRAGRIEDALKLLGTM 428
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH 197
+ G+ P Y I + + G KA+ET+E MKA G P+
Sbjct: 429 ESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPN 471
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 129 SLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYET 188
SLYS L + ++ A+ +F L++ GL PD+ Y M+ Y +VG +D+A+
Sbjct: 478 SLYS-----LAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSE 532
Query: 189 MKASGCTPHKLTFTILIRNLENAG 212
M +GC P + LI +L AG
Sbjct: 533 MIRNGCEPDVIVVNSLIDSLYKAG 556
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L ++ R E A+++F + + KP+ ++++ +I GK A +LF +
Sbjct: 899 LIDGLAKVGRLEE---AMRLFEEM-SDYGCKPNCAIFNILINGYGKIGDTETACQLFKRM 954
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
EG+ PD + YT ++ G +D+A+ + +K++G P + + +I L
Sbjct: 955 VNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGL 1008
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A ++F+ K++ P L+ Y+ +I L + A +LF ++K G PD + ++
Sbjct: 771 AYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLL 830
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
V+ + G I + E Y+ M + C P +T+ I+I +L
Sbjct: 831 AVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSL 868
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 96 LDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELK 155
L +L E+ R E A +FN +R E PD Y+ M+ K Q+ A L E+
Sbjct: 479 LYSLAEMGRLRE---AKTMFNGLR-ENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMI 534
Query: 156 KEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ G +PD V +I + G +D+A + ++ MK +P +T+ L+ L G
Sbjct: 535 RNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEG 591
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PDL Y+ ++ L ++ A F ELK GLDPD Y +I + +++A+
Sbjct: 960 RPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALA 1019
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
Y M+ G P T+ L+ NL AG
Sbjct: 1020 LYNEMRNRGIVPDLYTYNSLMLNLGLAG 1047
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 117 FVR-KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175
FV+ K +KPD +Y ++ + +E + +++ +G PD +T ++ V +
Sbjct: 320 FVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCK 379
Query: 176 VGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
D+A T++ M+ G P+ T+ LI L AG E
Sbjct: 380 ARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIE 419
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ + + +I L K ++ A ++F +K L P Y ++ + G + KA+E
Sbjct: 539 EPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIE 598
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
+E+M C+P+ ++F L+ E EL
Sbjct: 599 LFESMIEKKCSPNTISFNTLLDCFCKNDEVEL 630
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D+L + R +E A ++F+ + K++ P + Y+ ++ LGK ++ A ELF +
Sbjct: 548 LIDSLYKAGRVDE---AWQMFDRM-KDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESM 603
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
++ P+T + ++ + + ++ A++ + M C P LT+ +I L
Sbjct: 604 IEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGL 657
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
LR ++++ VF F++K++ + DL Y + L + + +++K G
Sbjct: 132 LRVHDKVEDMAAVFEFMQKKI-IRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVL 190
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
+ Y +I + +Q G +A+E Y M + G P T++ L+ L + E+V +
Sbjct: 191 NAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLL 250
Query: 222 RD 223
++
Sbjct: 251 KE 252
>gi|255540881|ref|XP_002511505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550620|gb|EEF52107.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 876
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 58/100 (58%), Gaps = 2/100 (2%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ +I G+ + A ++F E+++ G +PD Y +I ++ + G +D A+E
Sbjct: 412 QPNVVTYNRLIHSYGRANYLNDAVDVFNEMQRVGCEPDRVTYCTLIDIHAKAGFLDFALE 471
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDC 224
Y+ M+A+G +P T++++I L AG L AA + C
Sbjct: 472 MYQRMQAAGLSPDTFTYSVIINCLGKAG--HLAAAHKLFC 509
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 58/111 (52%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L++ + +AL F +++++ + D Y+ M+ +LG+ KQ +L ++ K+G P
Sbjct: 354 LKQLQDHTVALNFFYWLKRQPGFNHDGHTYTTMVGILGRAKQFGAINKLLDQMVKDGCQP 413
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ Y +I Y + ++ A++ + M+ GC P ++T+ LI AG
Sbjct: 414 NVVTYNRLIHSYGRANYLNDAVDVFNEMQRVGCEPDRVTYCTLIDIHAKAG 464
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
LD AL+++ + + PD YS +I LGK +A A +LFCE+ ++G P+ Y
Sbjct: 466 LDFALEMYQRM-QAAGLSPDTFTYSVIINCLGKAGHLAAAHKLFCEMVEQGCVPNLVTYN 524
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
MI + + A++ Y M+++G P K+T++I++ L + G + AV
Sbjct: 525 IMIALQAKARNYQSALKLYRDMQSAGFQPDKVTYSIVMEVLGHCGYLDEAEAV 577
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 7/114 (6%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R N L+ A+ VFN +++ V +PD Y +I + K + A E++ ++ GL PDT
Sbjct: 427 RANYLNDAVDVFNEMQR-VGCEPDRVTYCTLIDIHAKAGFLDFALEMYQRMQAAGLSPDT 485
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI------RNLENA 211
Y+ +I + G + A + + M GC P+ +T+ I+I RN ++A
Sbjct: 486 FTYSVIINCLGKAGHLAAAHKLFCEMVEQGCVPNLVTYNIMIALQAKARNYQSA 539
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++PD YS ++ +LG + AE +F E+K++ PD VY ++ ++ + G ++KA
Sbjct: 551 FQPDKVTYSIVMEVLGHCGYLDEAEAVFSEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAW 610
Query: 184 ETYETMKASGCTPHKLTFTILI 205
+ Y+TM +G P+ T L+
Sbjct: 611 QWYQTMLNTGLRPNVPTCNSLL 632
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+L Y+ MI + K + A +L+ +++ G PD Y+ ++ V G +D+A
Sbjct: 518 PNLVTYNIMIALQAKARNYQSALKLYRDMQSAGFQPDKVTYSIVMEVLGHCGYLDEAEAV 577
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ MK P + + +L+ AG E
Sbjct: 578 FSEMKRKNWVPDEPVYGLLVDLWGKAGNVE 607
>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g31850, chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 50/91 (54%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP L YS +++ LGK + M L E++ GL P+ +T I V + G ID+A E
Sbjct: 224 KPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYE 283
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ M GC P +T+T+LI L NAG+ E
Sbjct: 284 IFRRMDDEGCGPDLVTYTVLIDALCNAGQLE 314
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R ++D A ++F + E PDL Y+ +I L Q+ A+ELF ++K G P
Sbjct: 272 LGRAGKIDEAYEIFRRMDDE-GCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKP 330
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
D +Y ++ + G +D E + M+A G P +TFTIL+
Sbjct: 331 DQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILV 374
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD Y+ +I L K+ + A + F +L P R Y +I +VG +++AM
Sbjct: 855 KPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMR 914
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+E M GC P+ F ILI G+ E
Sbjct: 915 LFEEMSDYGCKPNCAIFNILINGYGKIGDTE 945
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
+D AL FN + K PD Y+ +I LGK++++ A L+ E++ G+ PD Y
Sbjct: 979 VDEALYYFNEL-KSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYN 1037
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
++ GM+++A YE ++ +G P T+ LIR
Sbjct: 1038 SLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIR 1076
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ ++ I +LG+ +I A E+F + EG PD YT +I G ++ A E
Sbjct: 259 RPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKE 318
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
+ MKA+G P ++ + L+ + G+
Sbjct: 319 LFVKMKANGHKPDQVIYITLLDKFNDFGD 347
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L + ++ AL ++N +R PDL Y+ ++L LG + A+ ++ EL+ G
Sbjct: 1005 INGLGKSQRMEEALALYNEMRNR-GIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAG 1063
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTIL 204
L+PD Y +I Y + A Y+ M GC P+ T+ L
Sbjct: 1064 LEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 13/118 (11%)
Query: 96 LDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELK 155
LDT E Q E D Y PD+ ++ ++ +L K + A F ++
Sbjct: 348 LDTFKEFWSQMEAD-------------GYMPDVVTFTILVDVLCKARDFDEAFATFDVMR 394
Query: 156 KEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
K+G+ P+ Y +I L+ G I+ A++ +TM++ G P T+ I +GE
Sbjct: 395 KQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGE 452
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L + R + D A F+ +RK+ P+L Y+ +I L + +I A +L +
Sbjct: 373 LVDVLCKAR---DFDEAFATFDVMRKQ-GILPNLHTYNTLICGLLRAGRIEDALKLLDTM 428
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH 197
+ G+ P Y I + + G KA+ET+E MKA G P+
Sbjct: 429 ESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPN 471
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 129 SLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYET 188
SLYS L + ++ A+ +F L++ GL PD+ Y M+ Y +VG +D+A+
Sbjct: 478 SLYS-----LAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSE 532
Query: 189 MKASGCTPHKLTFTILIRNLENAG 212
M +GC P + LI +L AG
Sbjct: 533 MIRNGCEPDVIVVNSLIDSLYKAG 556
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L ++ R E A+++F + + KP+ ++++ +I GK A +LF +
Sbjct: 899 LIDGLAKVGRLEE---AMRLFEEM-SDYGCKPNCAIFNILINGYGKIGDTETACQLFKRM 954
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
EG+ PD + YT ++ G +D+A+ + +K++G P + + +I L
Sbjct: 955 VNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGL 1008
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A ++F+ K++ P L+ Y+ +I L + A +LF ++K G PD + ++
Sbjct: 771 AYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLL 830
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
V+ + G I + E Y+ M + C P +T+ I+I +L
Sbjct: 831 AVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSL 868
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 96 LDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELK 155
L +L E+ R E A +FN +R E PD Y+ M+ K Q+ A L E+
Sbjct: 479 LYSLAEMGRLRE---AKTMFNGLR-ENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMI 534
Query: 156 KEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ G +PD V +I + G +D+A + ++ MK +P +T+ L+ L G
Sbjct: 535 RNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEG 591
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PDL Y+ ++ L ++ A F ELK GLDPD Y +I + +++A+
Sbjct: 960 RPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALA 1019
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
Y M+ G P T+ L+ NL AG E
Sbjct: 1020 LYNEMRNRGIVPDLYTYNSLMLNLGLAGMVE 1050
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 117 FVR-KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175
FV+ K +KPD +Y ++ + +E + +++ +G PD +T ++ V +
Sbjct: 320 FVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCK 379
Query: 176 VGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
D+A T++ M+ G P+ T+ LI L AG E
Sbjct: 380 ARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIE 419
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ + + +I L K ++ A ++F +K L P Y ++ + G + KA+E
Sbjct: 539 EPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIE 598
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
+E+M C+P+ ++F L+ E EL
Sbjct: 599 LFESMIXKKCSPNTISFNTLLDCFCKNDEVEL 630
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D+L + R +E A ++F+ + K++ P + Y+ ++ LGK ++ A ELF +
Sbjct: 548 LIDSLYKAGRVDE---AWQMFDRM-KDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESM 603
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ P+T + ++ + + ++ A++ + M C P LT+ +I L
Sbjct: 604 IXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGL 657
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
LR ++++ VF F++K++ + DL Y + L + + +++K G
Sbjct: 132 LRVHDKVEDMAAVFEFMQKKI-IRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVL 190
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
+ Y +I + +Q G +A+E Y M + G P T++ L+ L + E+V +
Sbjct: 191 NAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLL 250
Query: 222 RD 223
++
Sbjct: 251 KE 252
>gi|15221377|ref|NP_177613.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207514|sp|Q9SSF9.1|PP123_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74750
gi|5882748|gb|AAD55301.1|AC008263_32 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
gi|332197508|gb|AEE35629.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 855
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 58/111 (52%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L++ + AL F +++++ +K D Y+ M+ LG+ KQ +L E+ ++G P
Sbjct: 333 LKQMDNYANALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKP 392
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+T Y +I Y + + +AM + M+ +GC P ++T+ LI AG
Sbjct: 393 NTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAG 443
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP+ Y+ +I G+ + A +F ++++ G +PD Y +I ++ + G +D AM+
Sbjct: 391 KPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMD 450
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDC 224
Y+ M+ +G +P T++++I L AG L AA R C
Sbjct: 451 MYQRMQEAGLSPDTFTYSVIINCLGKAG--HLPAAHRLFC 488
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
LD+A+ ++ + +E PD YS +I LGK + A LFCE+ +G P+ +
Sbjct: 445 LDIAMDMYQRM-QEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFN 503
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
MI ++ + + A++ Y M+ +G P K+T++I++ L + G
Sbjct: 504 IMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCG 548
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 7/114 (6%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R N L A+ VFN + +E +PD Y +I + K + +A +++ +++ GL PDT
Sbjct: 406 RANYLKEAMNVFNQM-QEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDT 464
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI------RNLENA 211
Y+ +I + G + A + M GCTP+ +TF I+I RN E A
Sbjct: 465 FTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETA 518
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
+ ALK++ + + ++PD YS ++ +LG + AE +F E++++ PD VY
Sbjct: 516 ETALKLYRDM-QNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGL 574
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
++ ++ + G +DKA + Y+ M +G P+ T L+
Sbjct: 575 LVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLL 611
>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
Length = 969
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 77/149 (51%), Gaps = 4/149 (2%)
Query: 58 VLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNF 117
+ S E + + + LA+ K+ E + C L K + + L + D A ++
Sbjct: 389 ICSGEELPSPDLLALAE---KVYEEMLASSCVLNKVNTANFARCLCGMGKFDKAFQIIKL 445
Query: 118 VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177
+ ++ + PD S YS +I L + ++ A LF E+K G+ PD YT +I + +VG
Sbjct: 446 MMRK-GFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVG 504
Query: 178 MIDKAMETYETMKASGCTPHKLTFTILIR 206
+I++A ++ M++ GC+P +T+T L+
Sbjct: 505 LIEQARSWFDEMESVGCSPSVVTYTALLH 533
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K V PD+ Y+ +I K I A F E++ G P YT ++ YL+ +
Sbjct: 482 KSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQV 541
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+A + + M +GC P+ +T++ L+ L AGE +
Sbjct: 542 PQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQ 577
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D + + RR LDLA+KV + + E P++ Y+ MI L + + A +L +
Sbjct: 687 LIDAMFKDRR---LDLAIKVLSQML-ESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMM 742
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+K G +P+ YT +I + G +D +++ + M GC P+ +T+ +LI + AG
Sbjct: 743 EKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAG 800
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ +LD A +VF F + Y P + Y+ +I + K++++ +A ++ ++ + P+
Sbjct: 658 KVGKLDNAQEVF-FRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNV 716
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
YT MI ++G KA++ M+ GC P+ +T+T LI L +G+ ++
Sbjct: 717 VTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDM 769
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P+ +Y +I K ++ A+E+F + K G P YT +I + +D A++
Sbjct: 643 EPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIK 702
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
M S CTP+ +T+T +I L GE
Sbjct: 703 VLSQMLESSCTPNVVTYTAMIDGLCRIGE 731
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y +I L K ++ A+EL + G +P+ +Y +I + +VG +D A E
Sbjct: 609 PNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEV 668
Query: 186 YETMKASGCTPHKLTFTILI 205
+ M G P T+T LI
Sbjct: 669 FFRMSKCGYLPTVHTYTSLI 688
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R E ALK+ + + K P++ Y+ +I LGK+ ++ M+ +LF ++ +G P
Sbjct: 726 LCRIGECQKALKLLSMMEKR-GCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAP 784
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMK 190
+ Y +I G++D+A MK
Sbjct: 785 NYVTYRVLINHCCAAGLLDEAHSLLSEMK 813
>gi|22330179|ref|NP_683419.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
gi|75216707|sp|Q9ZU27.1|PPR76_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g51965, mitochondrial; Flags: Precursor
gi|4220445|gb|AAD12672.1| Similar to gi|3004555 F19F24.14 salt inducible protein homolog from
Arabidopsis thaliana BAC gb|AC003673 [Arabidopsis
thaliana]
gi|332194619|gb|AEE32740.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
Length = 650
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ R E+D A+ +F + + KPD+ Y+ +I LGKN + A F E++++G
Sbjct: 484 IASFGRVGEVDEAINIFEELERSDC-KPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKG 542
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
L+PD Y+ ++ + + ++ A +E M GC P+ +T+ IL+ LE G
Sbjct: 543 LNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNG 596
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 50/87 (57%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D +Y+ + LGK KQI+ +LF ++KK+G PD Y +I + +VG +D+A+ +
Sbjct: 441 DTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIF 500
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGE 213
E ++ S C P +++ LI L G+
Sbjct: 501 EELERSDCKPDIISYNSLINCLGKNGD 527
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
PD+ YS ++ GK +++ MA LF E+ +G P+ Y ++ + G +A++
Sbjct: 544 NPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVD 603
Query: 185 TYETMKASGCTPHKLTFTILIR 206
Y MK G TP +T+T+L R
Sbjct: 604 LYSKMKQQGLTPDSITYTVLER 625
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 7/107 (6%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ MI +G+ + A LF E+ EGL + Y ++ V + M+DKA++ + M
Sbjct: 273 YTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMV 332
Query: 191 ASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEE 237
+GC P++ T+++L+ L G+ VR D + VE +R++ +
Sbjct: 333 ETGCRPNEYTYSLLLNLLVAEGQ-----LVRLDGV--VEISKRYMTQ 372
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 41/80 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I G+ ++ A +F EL++ PD Y +I + G +D+A
Sbjct: 475 PDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVR 534
Query: 186 YETMKASGCTPHKLTFTILI 205
++ M+ G P +T++ L+
Sbjct: 535 FKEMQEKGLNPDVVTYSTLM 554
>gi|18394846|ref|NP_564110.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174883|sp|Q9LN22.1|PPR54_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g20300, mitochondrial; Flags: Precursor
gi|9558596|gb|AAF88159.1|AC026234_10 Contains similarity to a hypothetical protein T3P18.15 gi|5454201
from Arabidopsis thaliana BAC T3P18 gb|AC005698 and
contains multiple PPR PF|01535 repeats [Arabidopsis
thaliana]
gi|17386104|gb|AAL38598.1|AF446865_1 At1g20300/F14O10_8 [Arabidopsis thaliana]
gi|15450347|gb|AAK96467.1| At1g20300/F14O10_8 [Arabidopsis thaliana]
gi|332191838|gb|AEE29959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 537
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 69/126 (54%), Gaps = 5/126 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
++ L+ RR +E A F+ ++ ++PD+ +Y++++ + +I+ AE++F E+
Sbjct: 227 VISNLSRKRRASE---AQSFFDSLKDR--FEPDVIVYTNLVRGWCRAGEISEAEKVFKEM 281
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
K G++P+ Y+ +I + G I +A + + M SGC P+ +TF L+R AG
Sbjct: 282 KLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRT 341
Query: 215 ELVAAV 220
E V V
Sbjct: 342 EKVLQV 347
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y++MI + GK +Q +A L +K ++ +T +I Y++ G+ +A+ + M+
Sbjct: 154 YNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRME 213
Query: 191 ASGCTPHKLTFTILIRNL 208
GC P K+ F+I+I NL
Sbjct: 214 DYGCVPDKIAFSIVISNL 231
>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 819
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 11/171 (6%)
Query: 46 RDANKKPMWRSRVLSSEAIQAVHAM--------KLAKSSSKLEEGFQSRICRLLKADLLD 97
RD N W LS + Q + ++ +L S+L E F+ + ++LL
Sbjct: 82 RDPNLGKPWSYHGLSPQGQQVLRSLIEPNFDSGQLDALLSELFEPFKDKP-ESTSSELLA 140
Query: 98 TLTELRRQNELDLALKVFNFVRKEVWYKP--DLSLYSDMILMLGKNKQIAMAEELFCELK 155
L L + DLAL F++ K+ Y+ D S+ + +I MLGK +++ A LF L+
Sbjct: 141 FLKGLGFHKKFDLALCAFDWFMKQKDYQSMLDNSVIAIVISMLGKEGRVSSAANLFNGLQ 200
Query: 156 KEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
++G D YT +I + G +A+ ++ M+ GC P +T+ +++
Sbjct: 201 EDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEEGCKPTLITYNVILN 251
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%)
Query: 59 LSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFV 118
L EA Q MK A GF ++ LLD + R E A+KV N +
Sbjct: 294 LHQEAAQVFEEMKAA--------GFSHD--KVTYNALLDVYGKSHRPKE---AMKVLNEM 340
Query: 119 RKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM 178
+ P + Y+ +I ++ + A EL ++ ++G PD YT ++ + + G
Sbjct: 341 ELN-GFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGK 399
Query: 179 IDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
++ AM +E M+ +GC P+ TF I+ N G+
Sbjct: 400 VESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGK 434
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 1/124 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L+ R +++ A+ +F +R KP++ ++ I M G + ++F E+ G
Sbjct: 391 LSGFERAGKVESAMNIFEEMRN-AGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCG 449
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
L PD + ++ V+ Q GM + ++ MK +G P + TF LI G E
Sbjct: 450 LSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAM 509
Query: 219 AVRR 222
V R
Sbjct: 510 TVYR 513
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K + D Y+ ++ + GK+ + A ++ E++ G P Y +I Y + GM+
Sbjct: 306 KAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGML 365
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
D+AME M G P T+T L+ E AG+ E
Sbjct: 366 DEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVE 401
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ +I +N ++ A +F E++ G+ PD Y IG Y M ++A+
Sbjct: 696 KPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVITYNTFIGSYAADSMFEEAIG 755
Query: 185 TYETMKASGCTPHKLTFTILI 205
M GC P++ T+ ++
Sbjct: 756 VVRYMIKHGCRPNQNTYNSIV 776
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ ++ ++ + G+N + +F E+K+ G P+ + +I Y + G ++AM
Sbjct: 452 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTV 511
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
Y M +G TP T+ ++ L G
Sbjct: 512 YRRMLDAGVTPDLSTYNTVLAALARGG 538
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 9/112 (8%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P L ++L+ K + AE F ELK+ G PD M+ +Y + M+ KA E
Sbjct: 591 EPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKANE 650
Query: 185 TYETMKASGCTPHKLTFTILI----RNLENAGEEE-----LVAAVRRDCIQY 227
+ MK G TP T+ L+ R+ + EE L ++ D I Y
Sbjct: 651 VLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISY 702
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE + P ++ Y+ ++ M ++ +EE+ E+ +G+ PD Y +I Y + +
Sbjct: 656 KERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRM 715
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNL-ENAGEEELVAAVR 221
A + M+ SG P +T+ I + ++ EE + VR
Sbjct: 716 RDASRIFSEMRDSGIVPDVITYNTFIGSYAADSMFEEAIGVVR 758
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 10/100 (10%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGK-----NKQIAMAEELFCELKKEGLDPDTRV 165
A+ VF + +E KP L Y+ ++ + GK NK ++ E++ K +G+ PD
Sbjct: 227 AVNVFKKMEEE-GCKPTLITYNVILNVFGKMGTPWNKITSLVEKM----KSDGIAPDAYT 281
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y +I + + +A + +E MKA+G + K+T+ L+
Sbjct: 282 YNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALL 321
>gi|224093190|ref|XP_002309826.1| predicted protein [Populus trichocarpa]
gi|222852729|gb|EEE90276.1| predicted protein [Populus trichocarpa]
Length = 1480
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 14/129 (10%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT-RVYTEM 169
AL+V+ ++ WY P+ + S ++ +LGK Q A+A E+F ++ E +T +VY M
Sbjct: 203 ALEVYEWLNLRHWYSPNARMLSTILSVLGKANQEALAVEVF--MRAEPSAGNTVQVYNAM 260
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE------ELVAAVRR- 222
+GVY + G +K E + M+ GC P ++F LI AG EL+ VRR
Sbjct: 261 MGVYARRGRFNKVQELLDLMRERGCKPDLVSFNTLINARLKAGAMMPNLAIELLNEVRRS 320
Query: 223 ----DCIQY 227
D I Y
Sbjct: 321 GLRPDTITY 329
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R + L+ A KVF+ + +PDL Y+ MI + G+ AE+LF +L+ G PD
Sbjct: 338 RASNLEEAAKVFDDMEAH-HCQPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDA 396
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
Y ++ + + G ++K E +E M G ++T+ +I G+ EL + RD
Sbjct: 397 VSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMIHMYGKQGQNELALQLYRD 456
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+Q + +LAL+++ ++ PD Y+ +I LGK +IA A + E+ G+ P
Sbjct: 443 KQGQNELALQLYRDMQSS-GRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLNTGVKPTL 501
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ Y+ +I Y + G +A ET++ M SG P L +++++
Sbjct: 502 KTYSALICGYAKAGKPVEAEETFDCMLRSGIRPDHLAYSVML 543
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 89 RLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAE 148
++ K+ +L L R + K+++ + K Y P + LY M +L + KQ+ E
Sbjct: 880 KISKSSILLMLDAFARAGNIFEVKKIYHGM-KAAGYFPTMHLYRVMARLLSRGKQVRDVE 938
Query: 149 ELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ E+++ G PD ++ ++ +Y+ + K ++ Y+ +K G P + T+ LI
Sbjct: 939 AMLSEMEEAGFKPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLI 995
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A ++FN + ++ PD Y+ ++ + + +E++ E+ K G D Y MI
Sbjct: 380 AEQLFNDLESRGFF-PDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMI 438
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+Y + G + A++ Y M++SG P +T+T+LI +L
Sbjct: 439 HMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSL 476
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P L Y ++ GK + + AEELF EL+ +G D Y M+ +Y G KA
Sbjct: 1020 EPKLDTYKSLVASFGKQQLVEQAEELFEELQSKGCKLDRSFYHTMMKIYRNSGSHSKAER 1079
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ MK +G P T +L+ + ++G+ +
Sbjct: 1080 LFSMMKDAGVEPTIATMHLLMVSYGSSGQPQ 1110
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP L YS +I K + AEE F + + G+ PD Y+ M+ ++L+ +AM
Sbjct: 498 KPTLKTYSALICGYAKAGKPVEAEETFDCMLRSGIRPDHLAYSVMLDIHLRFNEPKRAMT 557
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
Y+ M G T + +++R L + E + V RD
Sbjct: 558 LYKEMLHDGITLDHSLYELMLRTLRKVNKVEDIGRVIRD 596
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
+LA+++ N VR+ +PD Y+ +I + + A ++F +++ PD Y
Sbjct: 308 NLAIELLNEVRRS-GLRPDTITYNTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYNA 366
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
MI VY + G+ KA + + +++ G P +++ L+ G E V + + ++
Sbjct: 367 MISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVK 424
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 120 KEVW-------YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGV 172
KE+W + D Y+ MI M GK Q +A +L+ +++ G +PD YT +I
Sbjct: 416 KEIWEEMVKIGFGKDEMTYNTMIHMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDS 475
Query: 173 YLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ I +A M +G P T++ LI AG+
Sbjct: 476 LGKTNKIAEAAGVMSEMLNTGVKPTLKTYSALICGYAKAGK 516
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E +KPDLS+++ ++ M + +++ +K++GL+PD Y +I +Y +
Sbjct: 945 EEAGFKPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVMYCRDHRP 1004
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
++ M+ +G P T+ L+ + G+++LV
Sbjct: 1005 EEGFSLMHEMRVAGLEPKLDTYKSLVASF---GKQQLV 1039
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 48/93 (51%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE +PD Y+ +I+M ++ + L E++ GL+P Y ++ + + ++
Sbjct: 980 KEDGLEPDEDTYNTLIVMYCRDHRPEEGFSLMHEMRVAGLEPKLDTYKSLVASFGKQQLV 1039
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
++A E +E +++ GC + + +++ N+G
Sbjct: 1040 EQAEELFEELQSKGCKLDRSFYHTMMKIYRNSG 1072
>gi|357455187|ref|XP_003597874.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359582|gb|ABD28711.2| Tetratricopeptide-like helical [Medicago truncatula]
gi|355486922|gb|AES68125.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 822
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+Q++LD ALK+F + K+ YKP++ Y+ +I K ++ AE++F ++ L+P+
Sbjct: 567 KQHDLDSALKMFGQMMKQ-KYKPNVVAYTSLINGFCKIADMSRAEKVFRAMQSFNLEPNV 625
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
YT +IG + + G +KA +E M + C P+ TF LI L N L+
Sbjct: 626 VTYTILIGGFSKTGKPEKAASFFELMLMNNCLPNDTTFHYLINGLTNITNTTLL 679
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
++ +L A +VF ++ + + P L Y +I K + + ++L E+ GL+ +
Sbjct: 252 KKGDLKRATRVFEELKLK-GFLPTLETYGALIDGFCKAGKFQVVDQLLNEMNVMGLNVNV 310
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
+V+ +I + G++DKA E M GC P T+ ILI
Sbjct: 311 KVFNSIIDAKYKYGLVDKAAEMMRMMTEMGCEPDITTYNILIN 353
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 14/126 (11%)
Query: 107 ELDLALKVFNFVRKEVWYK---PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
E+D+AL VR+++ K PD +Y+ ++ L K + A+ L E+ L PD
Sbjct: 430 EIDVAL----MVREKMMEKGVFPDAQIYNVLMSGLCKKGRFPAAKLLLSEMLDLNLQPDA 485
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
+Y ++ +++ +DKA E +E + + G P + + ++I+ L G+ D
Sbjct: 486 YMYATLVDGFIRNNELDKATELFEVVMSKGIDPGVVGYNVMIKGLCKCGK-------MTD 538
Query: 224 CIQYVE 229
+ YV
Sbjct: 539 AVSYVN 544
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 48/96 (50%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PD +S +I K + A ++F ++ K+ P+ YT +I + ++ + +A
Sbjct: 551 HAPDEYTHSTVIDGYVKQHDLDSALKMFGQMMKQKYKPNVVAYTSLINGFCKIADMSRAE 610
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAA 219
+ + M++ P+ +T+TILI G+ E A+
Sbjct: 611 KVFRAMQSFNLEPNVVTYTILIGGFSKTGKPEKAAS 646
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD +Y+ ++ +N ++ A ELF + +G+DP Y MI + G + A+
Sbjct: 482 QPDAYMYATLVDGFIRNNELDKATELFEVVMSKGIDPGVVGYNVMIKGLCKCGKMTDAVS 541
Query: 185 TYETMKASGCTPHKLTFTILI 205
MK + P + T + +I
Sbjct: 542 YVNKMKIANHAPDEYTHSTVI 562
>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 915
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L + +E D A +F+ + PD+ +Y+ I + ++ AE L C++ +G
Sbjct: 596 IDNLLKDDEFDQAHDMFDQML-STGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKG 654
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
+ PDT +YT I Y + G ID A + M GC P T++ LI++L NA +E+
Sbjct: 655 IMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSNAKPKEV 712
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
++ +L A K+ + + E PD YS I L K + A LF LK++G+ +
Sbjct: 461 KEGDLGSAYKLLSLM-NESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANE 519
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+Y+ +I Y +VG + + M ++GC P+ +T+ LI
Sbjct: 520 VIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLI 561
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 87 ICRLLKADL-LDTLTELR------RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
+ ++++A L LDT T R +D A +F + + + ++S Y+++I
Sbjct: 227 VSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVS-YTNLIHGFC 285
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
+ +++ A +LF ++ ++ P R YT +I Q+G +A+ ++ M C P+
Sbjct: 286 EARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVH 345
Query: 200 TFTILIRNL 208
T+T+LI +L
Sbjct: 346 TYTVLICSL 354
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+ + Y I L K + +A LF +K++G P+ +Y ++G Q+G+ +A+
Sbjct: 756 PNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLGCSCQLGLYGEAIRW 815
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ M + PH + +L+ L + G +E
Sbjct: 816 LDIMIENRHLPHLDSCKLLLCGLYDEGNDE 845
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D Y+ +IL +NK + A +F + +G + YT +I + + +D+A++ +
Sbjct: 238 DTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLF 297
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEE 214
M C P T+T++I L G +
Sbjct: 298 SQMHEDNCWPTVRTYTVIIFALCQLGRK 325
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L +L R+ E AL +F + E +P++ Y+ +I L ++ A+++ + ++G
Sbjct: 319 LCQLGRKTE---ALNMFKEM-TEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKG 374
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
L P Y +I Y + G+ A+E M+++ C+P+ T+ LI
Sbjct: 375 LIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELI 421
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P Y+ +I L K+ + A ++F ++ G PD +YT I Y G + A
Sbjct: 586 EPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEV 645
Query: 185 TYETMKASGCTPHKLTFTILI 205
M A G P + +T+ I
Sbjct: 646 LICKMNAKGIMPDTMLYTLFI 666
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 60/135 (44%), Gaps = 9/135 (6%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ +I K + A +L + + GL PD Y+ I + G++++A
Sbjct: 446 QPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARS 505
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG---------EEELVAAVRRDCIQYVEFPERFL 235
+E++K G +++ ++ LI G ++ L A + I Y + +
Sbjct: 506 LFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYC 565
Query: 236 EEVYQKHRKTQVDLV 250
+E K + VD++
Sbjct: 566 KEKNFKEARLLVDIM 580
>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 11/147 (7%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
LT LR+ ++D ALKVF ++K+ P+LS Y+ +I ML + ++ A EL ++K G
Sbjct: 350 LTCLRKMGKVDEALKVFEEMKKDA--APNLSTYNILIDMLCRAGKLDTAFELRDSMQKAG 407
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG------ 212
L P+ R M+ + +D+A +E M CTP ++TF LI L G
Sbjct: 408 LFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAY 467
Query: 213 ---EEELVAAVRRDCIQYVEFPERFLE 236
E+ L + R + I Y + F
Sbjct: 468 KVYEKMLDSDCRTNSIVYTSLIKNFFN 494
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ LY+ I GK ++ MA + F E++ GL PD YT MIGV + +D+A+E +
Sbjct: 237 DIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMF 296
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGE 213
E ++ + P + +I +AG+
Sbjct: 297 EHLEKNRRVPCTYAYNTMIMGYGSAGK 323
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
N D+ L +F + +E+ Y+P + L++ +I K ++ A L E+K LD D +
Sbjct: 182 NHSDMMLTLFQQM-QELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVL 240
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y I + +VG +D A + + ++A+G P ++T+T +I
Sbjct: 241 YNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMI 280
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 74/142 (52%), Gaps = 10/142 (7%)
Query: 71 KLAKSSSKLEE----GFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKP 126
K+ K+ LEE GF+ + + ++D L ++ R +E + + R E+
Sbjct: 602 KVNKAYQLLEEMKTKGFEPTV--VTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIEL---- 655
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
++ +YS +I GK +I A + EL ++GL P+ + ++ ++ I++A+ +
Sbjct: 656 NVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCF 715
Query: 187 ETMKASGCTPHKLTFTILIRNL 208
++MK CTP+++T+ ILI L
Sbjct: 716 QSMKELKCTPNQVTYGILINGL 737
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LLD L + NE AL F + KE+ P+ Y +I L K ++ A + E+
Sbjct: 698 LLDALVKAEEINE---ALVCFQSM-KELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEM 753
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
+K+G+ P T YT MI + G I +A ++ KA+G P + +I L N
Sbjct: 754 QKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNG 810
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
++D+A K F+ + KPD Y+ MI +L K ++ A E+F L+K P T Y
Sbjct: 253 KVDMAWKFFHEIEAN-GLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAY 311
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
MI Y G D+A E +A G P + + ++ L G+
Sbjct: 312 NTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGK 358
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PD YS +I L K ELF +K++G DTR Y +I + + G ++KA
Sbjct: 548 FVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAY 607
Query: 184 ETYETMKASGCTPHKLTFTILIRNL 208
+ E MK G P +T+ +I L
Sbjct: 608 QLLEEMKTKGFEPTVVTYGSVIDGL 632
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 11/110 (10%)
Query: 115 FNFVRKEVWYK-----------PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
FN RKE +K PDL L + + + K + +F E+K PD
Sbjct: 493 FNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDA 552
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
R Y+ +I ++ G ++ E + +MK GC + I+I G+
Sbjct: 553 RSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGK 602
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++P + Y +I L K ++ A LF E K + ++ + +Y+ +I + +VG ID+A
Sbjct: 618 FEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAY 677
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGE 213
E + G TP+ T+ L+ L A E
Sbjct: 678 LILEELMQKGLTPNLYTWNSLLDALVKAEE 707
>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
Length = 609
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 12/139 (8%)
Query: 80 EEGFQSRICRLLKADLLDTLTELRR---QNELDLALKVFNFVRKEVWYKPDLSLYSDMIL 136
E+GF C L++ L + +R NEL L LK E + +Y+ MI
Sbjct: 405 EKGFPP--CPAAYCSLINALGKAKRYEAANELFLELK-------ENCGRSSARIYAVMIK 455
Query: 137 MLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP 196
LGK + + A +LF E+KK G +PD Y ++ ++ GMI++A TM+ +GCTP
Sbjct: 456 NLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAFSALRTMEENGCTP 515
Query: 197 HKLTFTILIRNLENAGEEE 215
+ I++ L G E
Sbjct: 516 DLNSHNIILNGLARTGRPE 534
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 75/144 (52%), Gaps = 2/144 (1%)
Query: 79 LEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILML 138
++E +S C + ADL + + L + ++ AL VF ++ KP S Y+ MILML
Sbjct: 118 IQEMVRSPTCVIGPADLSEVVKILGKAKMVNKALSVFYQIKSRKC-KPTASTYNSMILML 176
Query: 139 GKNKQIAMAEELFCELKKEG-LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH 197
+ EL+ E+ EG PDT Y+ ++ ++++G D A+ ++ MKA+G P
Sbjct: 177 MQEGHHEKIHELYHEMCNEGDCFPDTMTYSVLVSAFVKLGRDDYAIRLFDEMKANGLHPT 236
Query: 198 KLTFTILIRNLENAGEEELVAAVR 221
+T L+ +G+E+ + V+
Sbjct: 237 AKIYTTLLAIYFKSGDEKALGLVQ 260
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 49/83 (59%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + Y+++I LGK+ ++ A +F + K+G PD + +I ++ + G ++ A++
Sbjct: 269 PTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLEDALKL 328
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
++ M++ C P+ +T+ +I+ L
Sbjct: 329 FDQMRSLKCAPNVVTYNTVIKAL 351
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI-GVYLQVGMIDKAM 183
KPD+ L +++I + GK ++ A +LF +++ P+ Y +I ++ +A
Sbjct: 303 KPDVVLINNLINIFGKAGRLEDALKLFDQMRSLKCAPNVVTYNTVIKALFESKAPASEAA 362
Query: 184 ETYETMKASGCTPHKLTFTILI 205
+E MKA+G TP T++ILI
Sbjct: 363 SWFEKMKANGVTPSSFTYSILI 384
>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
Length = 638
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 61/110 (55%), Gaps = 1/110 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+T + +++ AL +F +R + + +PD+ Y+++I LGK +I A F E+++EG
Sbjct: 272 ITLFFKLDDVHGALSLFEEMRHQ-YCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREG 330
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
PDT V MI + G +D AM+ ++ M C P +T+ +I+ L
Sbjct: 331 CRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKAL 380
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 6/133 (4%)
Query: 80 EEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
E+GF C L+D L + +R DLA ++F + KE +Y+ MI LG
Sbjct: 434 EKGFPP--CPAAYCSLIDALGKAKR---YDLACELFQEL-KENCGSSSARVYAVMIKHLG 487
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
K ++ A +F E+ K G PD Y ++ + GM+D+A+ T M+ GC P
Sbjct: 488 KAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDIN 547
Query: 200 TFTILIRNLENAG 212
++ I++ L G
Sbjct: 548 SYNIILNGLAKTG 560
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 71/152 (46%)
Query: 61 SEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRK 120
SE ++ + K+ + + ++R C+ + L + + +++N +
Sbjct: 163 SEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYGKVHELYNEMST 222
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E PD YS +I K + A +L E+K+ G+ P T++YT +I ++ ++ +
Sbjct: 223 EGHCFPDTMTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVH 282
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAG 212
A+ +E M+ C P T+T LIR L AG
Sbjct: 283 GALSLFEEMRHQYCRPDVFTYTELIRGLGKAG 314
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+ +L R+ D A ++ N + KE +P +Y+ +I + K + A LF E+
Sbjct: 236 LISAFCKLGRR---DSATQLLNEM-KENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEM 291
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ + PD YTE+I + G ID+A + M+ GC P + +I L AG
Sbjct: 292 RHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAG 349
>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
Length = 632
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL +F +R ++ +PD+ Y+++I LGK +I A + E+++EG PDT V MI
Sbjct: 284 ALSLFEEMRY-MYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMI 342
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ G +D ++ +E M S C P+ +T+ +I+ L
Sbjct: 343 NFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKAL 380
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 71/152 (46%)
Query: 61 SEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRK 120
S+ I+ + K+ + + ++R C+ + L + + + +++N +
Sbjct: 163 SQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSN 222
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E +PD YS +I K + A L E+K+ G+ P ++YT +I ++ ++ +
Sbjct: 223 EGHCQPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVH 282
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAG 212
A+ +E M+ C P T+T LIR L AG
Sbjct: 283 GALSLFEEMRYMYCRPDVFTYTELIRGLGKAG 314
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 6/133 (4%)
Query: 80 EEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
E+GF C L+D L + +R DLA ++F + KE +Y+ MI LG
Sbjct: 434 EKGFPP--CPAAYCSLIDALGKAKR---YDLACELFQEL-KENCGSSSARVYAVMIKHLG 487
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
K ++ A LF E+ K G P+ Y ++ + M+D+A+ T M+ GC P
Sbjct: 488 KAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDIN 547
Query: 200 TFTILIRNLENAG 212
++ I++ L G
Sbjct: 548 SYNIILNGLAKTG 560
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+ +L RQ D A+++ N + KE +P +Y+ +I + K + A LF E+
Sbjct: 236 LISAFCKLGRQ---DSAIRLLNEM-KENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEM 291
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ PD YTE+I + G ID+A Y M+ GC P + +I L AG
Sbjct: 292 RYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAG 349
>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Cucumis sativus]
Length = 1000
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 77/152 (50%), Gaps = 14/152 (9%)
Query: 62 EAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKE 121
EA + H M +E G+ + + L+D L + +R LDL LKV + + +
Sbjct: 698 EAQEVFHKM--------VEHGYNPNV--YTYSSLIDRLFKDKR---LDLVLKVLSKMLEN 744
Query: 122 VWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDK 181
P++ +Y++MI L K + A +L ++++G P+ YT MI + + G +DK
Sbjct: 745 SC-APNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDK 803
Query: 182 AMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+E + M + GC P+ +T+T+LI + G
Sbjct: 804 CLELFREMGSKGCAPNFVTYTVLINHCCATGH 835
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 11/124 (8%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYK-----------PDLSLYSDMILMLGKNK 142
++L T L + N + A + F + E YK PD S YS++I L
Sbjct: 444 EMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNAS 503
Query: 143 QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFT 202
++ A LF E+K G+ PD YT +I + + G+I +A + M GC P +T+T
Sbjct: 504 RVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYT 563
Query: 203 ILIR 206
LI
Sbjct: 564 TLIH 567
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I K I A E+ ++G +P YT +I YL+ + A E
Sbjct: 522 PDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANEL 581
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+E M A GC P+ +T+T LI +G E
Sbjct: 582 FELMIAKGCFPNVITYTALIDGYCKSGNIE 611
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ +LD A +VF+ + E Y P++ YS +I L K+K++ + ++ ++ + P+
Sbjct: 692 KAAKLDEAQEVFHKMV-EHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNI 750
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+YTEMI +V D+A + M+ GC P+ +T+T +I AG+
Sbjct: 751 VIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGK 800
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
E+ G PDT Y+E+IG ++ A ++ MK +G P T+TILI AG
Sbjct: 479 EMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAG 538
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
++D+ K+ N V + KP++ Y ++ L K ++ A +L + +G +P+T VY
Sbjct: 628 DVDMYFKIKNNVAE----KPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVY 683
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+I + + +D+A E + M G P+ T++ LI L +LV V
Sbjct: 684 DALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKV 737
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P + Y+ +I K K++++A ELF + +G P+ YT +I Y + G I+KA +
Sbjct: 556 EPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQ 615
Query: 185 TYETMKASGCTP 196
Y M+ P
Sbjct: 616 IYARMRGDADIP 627
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 90 LLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEE 149
++ +++D L+++ + +E A K+ + +E KP++ Y+ MI GK ++ E
Sbjct: 751 VIYTEMIDGLSKVAKTDE---AYKLM-LMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLE 806
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
LF E+ +G P+ YT +I G +D+A E MK + H ++ +I
Sbjct: 807 LFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVI 862
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 18/117 (15%)
Query: 90 LLKADLLDTLTELRRQ-NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAE 148
L+AD LDT + R+ +EL L++ F L ++ + +GK +
Sbjct: 251 FLRADKLDTAQLVHREMSELGLSMDEFT-----------LGFFAQALCKVGKWR------ 293
Query: 149 ELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
E ++KE P+T +Y +MI + ++AM+ M+++ C P+ T+ IL+
Sbjct: 294 EALSLIEKEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILL 350
>gi|449440748|ref|XP_004138146.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Cucumis sativus]
Length = 874
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 58/104 (55%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L+R ++ +AL F ++++ ++ D Y+ MI +LG+ KQ A +L ++ K+G P
Sbjct: 353 LKRVDDHAVALGFFYWLKRLPRFRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQP 412
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ Y +I Y + + A+ ++ M+ +GC P ++T+ LI
Sbjct: 413 NVVTYNRIIHSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCTLI 456
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ +I G+ + A +F ++++ G +PD Y +I ++ + G +D AM
Sbjct: 411 QPNVVTYNRIIHSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMG 470
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDC 224
YE M+ +G TP T++++I L AG L AA R C
Sbjct: 471 MYEKMQDAGLTPDTFTYSVMINCLGKAG--HLNAAHRLFC 508
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
LD+A+ ++ + ++ PD YS MI LGK + A LFC + EG P+ Y
Sbjct: 465 LDVAMGMYEKM-QDAGLTPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYN 523
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
MI + + + A++ Y M+ SG P K+T+ I++ L + G
Sbjct: 524 IMIALQAKARNYEIALKLYRDMQQSGFEPDKVTYCIVMEVLGHCG 568
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 1/130 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R N L A+ VF + +E +PD Y +I + K+ + +A ++ +++ GL PDT
Sbjct: 426 RANYLQDAVNVFKQM-QEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDT 484
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
Y+ MI + G ++ A + M GC P+ +T+ I+I A E+ + RD
Sbjct: 485 FTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALKLYRD 544
Query: 224 CIQYVEFPER 233
Q P++
Sbjct: 545 MQQSGFEPDK 554
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
++ALK++ +++ ++PD Y ++ +LG + AE +F E++K+ PD VY
Sbjct: 536 EIALKLYRDMQQS-GFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGL 594
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
++ ++ + G + KA E Y M +G P+ T L+
Sbjct: 595 LVDLWGKSGNVQKAWEWYHAMLKAGLKPNVPTCNSLL 631
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
L+ A +F ++K+ W PD +Y ++ + GK+ + A E + + K GL P+
Sbjct: 570 LEEAEGIFIEMQKKNWV-PDEPVYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKPNVPTCN 628
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
++ +L+V + A + ++M G P T+T+L+ +A ++
Sbjct: 629 SLLSAFLRVHQLSDAYQLLQSMLTFGLKPSLQTYTLLLSCCTDAQTNDM 677
>gi|42573413|ref|NP_974803.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122214363|sp|Q3E9F0.1|PP392_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g18475
gi|110737103|dbj|BAF00503.1| hypothetical protein [Arabidopsis thaliana]
gi|332005185|gb|AED92568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 506
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R E++ A K+ +F++K P++ YS ++ K +I A++ F E+KK GL DT
Sbjct: 280 RAGEVERAKKILDFMKKN-GCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDT 338
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
YT ++ + + G D+AM+ MKAS C LT+ +++R L + G E
Sbjct: 339 VGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGRSE 390
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 88 CRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMA 147
CR ++ L+ + R + D +++FN ++ KP L+ S + +L + ++ ++
Sbjct: 120 CRFQESLFLNLMRHFSRSDLHDKVMEMFNLIQVIARVKPSLNAISTCLNLLIDSGEVNLS 179
Query: 148 EELFCELKKE-GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCT-PHKLTFTILI 205
+L K GL P+T ++ ++ + + G I+ A E MK SG + P+ +T++ L+
Sbjct: 180 RKLLLYAKHNLGLQPNTCIFNILVKHHCKNGDINFAFLVVEEMKRSGISYPNSITYSTLM 239
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
+ L+D L R E A+++F + + PD ++ MI + ++ A+++
Sbjct: 236 STLMDCLFAHSRSKE---AVELFEDMISKEGISPDPVTFNVMINGFCRAGEVERAKKILD 292
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+KK G +P+ Y+ ++ + +VG I +A +T++ +K +G + +T L+ G
Sbjct: 293 FMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDTVGYTTLMNCFCRNG 352
Query: 213 EEE 215
E +
Sbjct: 353 ETD 355
>gi|297812025|ref|XP_002873896.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319733|gb|EFH50155.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 507
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R E++ A + +F++K P++ YS ++ K +I A+++F E+KK GL DT
Sbjct: 281 RSGEVERAKMILDFMKKN-GCNPNVYNYSALMNGFCKEGKIQEAKQVFDEVKKTGLKLDT 339
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
YT ++ + G ID+AM+ MKAS C LT+ +++R L + G E
Sbjct: 340 VGYTTLMNCLCRNGEIDEAMKLLGEMKASRCRADALTYNVILRGLSSEGRSE 391
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 88 CRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMA 147
CR ++ L+ + R + D +++FN ++ KP L+ S + +L + ++ +A
Sbjct: 121 CRFQESLFLNLMRHFSRFDLHDKVMEMFNLIQVIARVKPSLNAISTCLNLLIDSGEVDLA 180
Query: 148 EELFCELKKE-GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCT-PHKLTFTILI 205
+L K L P+T ++ ++ + + G ID A E MK SG + P+ +T++ L+
Sbjct: 181 RKLLLYAKHNLALQPNTCIFNILVKHHCKNGDIDSAFRVVEEMKRSGISYPNSITYSTLM 240
>gi|449477323|ref|XP_004154991.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g18900-like [Cucumis sativus]
Length = 874
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 58/104 (55%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L+R ++ +AL F ++++ ++ D Y+ MI +LG+ KQ A +L ++ K+G P
Sbjct: 353 LKRVDDHAVALGFFYWLKRLPRFRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQP 412
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ Y +I Y + + A+ ++ M+ +GC P ++T+ LI
Sbjct: 413 NVVTYNRIIHSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCTLI 456
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ +I G+ + A +F ++++ G +PD Y +I ++ + G +D AM
Sbjct: 411 QPNVVTYNRIIHSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMG 470
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDC 224
YE M+ +G TP T++++I L AG L AA R C
Sbjct: 471 MYEKMQDAGLTPDTFTYSVMINCLGKAG--HLNAAHRLFC 508
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
LD+A+ ++ + ++ PD YS MI LGK + A LFC + EG P+ Y
Sbjct: 465 LDVAMGMYEKM-QDAGLTPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYN 523
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
MI + + + A++ Y M+ SG P K+T+ I++ L + G
Sbjct: 524 IMIALQAKARNYEIALKLYRDMQQSGFEPDKVTYCIVMEVLGHCG 568
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 1/130 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R N L A+ VF + +E +PD Y +I + K+ + +A ++ +++ GL PDT
Sbjct: 426 RANYLQDAVNVFKQM-QEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDT 484
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
Y+ MI + G ++ A + M GC P+ +T+ I+I A E+ + RD
Sbjct: 485 FTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALKLYRD 544
Query: 224 CIQYVEFPER 233
Q P++
Sbjct: 545 MQQSGFEPDK 554
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
++ALK++ +++ ++PD Y ++ +LG + AE +F E++K+ PD VY
Sbjct: 536 EIALKLYRDMQQS-GFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGL 594
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
++ ++ + G + KA E Y M +G P+ T L+
Sbjct: 595 LVDLWGKSGNVQKAWEWYHAMLKAGLKPNVPTCNSLL 631
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
L+ A +F ++K+ W PD +Y ++ + GK+ + A E + + K GL P+
Sbjct: 570 LEEAEGIFIEMQKKNWV-PDEPVYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKPNVPTCN 628
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
++ +L+V + A + ++M G P T+T+L+ +A ++
Sbjct: 629 SLLSAFLRVHQLSDAYQLLQSMLTFGLKPSLQTYTLLLSCCTDAQTNDM 677
>gi|357128238|ref|XP_003565781.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial-like [Brachypodium distachyon]
Length = 547
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 5/134 (3%)
Query: 91 LKADLLD---TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMA 147
LKADL D + L + ++ A +F +++ + PDL Y+ ++ G K + M
Sbjct: 226 LKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRNGRFVPDLKTYTVLMEGWGHEKDLLML 285
Query: 148 EELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN 207
+ ++ E+ G+ PD Y +I + + G D+A++ + M+A+GC P + +LI
Sbjct: 286 KSVYQEMLDAGIKPDVVAYGTLISSFCKSGKCDEAIKVFREMEANGCMPSPHVYCMLING 345
Query: 208 LENAGEEELVAAVR 221
L EE L A++
Sbjct: 346 L--GSEERLDEALK 357
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R ++ A K+ + +RK P+ Y ++ L K+++I A +F + EG +P
Sbjct: 383 RSSKFQHAFKMVDEMRK-TGIGPNARTYDIILQYLIKSQKIEEAYNVFQRMGMEGCEPQL 441
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL--ENAGEEELV 217
YT M+G++ +D A++ ++ MK G P F+ LI L EN EE V
Sbjct: 442 NTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSSLINGLCFENRLEEACV 497
>gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Vitis vinifera]
Length = 513
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
++D ALK+ F++K P++ YS ++ K ++ A+E+F E+K GL PDT Y
Sbjct: 287 KVDRALKIMEFMKKN-GCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGY 345
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
T +I + + G +D+AME + M+ + C +TF +++ L G E
Sbjct: 346 TTLINFFCRAGRVDEAMELLKDMRENKCRADTVTFNVILGGLCREGRFE 394
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL-KKEGLDPD 162
+ ++D A +V ++K P+L YS +I L + ++ A ELF E+ K+ + PD
Sbjct: 212 KNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPD 271
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
Y +I + +D+A++ E MK +GC P+ ++ L+ G E
Sbjct: 272 ALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLE 324
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Query: 88 CRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMA 147
C+ + L+ + + + + +++F+ +R V KP L S + +L ++ Q+ +
Sbjct: 124 CKFHEGIFLNLMKHFSKLSLHERVVEMFDAIRPIVREKPSLKAISTCLNLLVESNQVDLT 183
Query: 148 EELFCELKKE-GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCT-PHKLTFTILI 205
+ KK L+P+T ++ ++ + + G ID A E E MK S + P+ +T++ LI
Sbjct: 184 RKFLLNSKKSLNLEPNTCIFNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLI 243
Query: 206 RNLENAG 212
L +G
Sbjct: 244 NGLCGSG 250
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 45/87 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ +I +++ A ++ +KK G +P+ Y+ ++ + + G +++A E
Sbjct: 270 PDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEV 329
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
++ MK+ G P + +T LI AG
Sbjct: 330 FDEMKSLGLKPDTVGYTTLINFFCRAG 356
>gi|297737325|emb|CBI26526.3| unnamed protein product [Vitis vinifera]
Length = 1005
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 104 RQNELDLALKVFNFVR-KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
R +LD A+++FN R V D Y+++I GK + A LF E+++EG+ P
Sbjct: 760 RGRKLDKAVEMFNKARCSGVGVSLDEKTYTNLISYYGKAGKSHEASLLFREMQEEGIKPG 819
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
Y MI VY G+ +A E ++ M GC+P LT+ LIR
Sbjct: 820 KVSYNIMINVYATAGLHHEAQELFQAMLRDGCSPDSLTYLALIR 863
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 84/188 (44%), Gaps = 6/188 (3%)
Query: 23 HQRPQISLPSGKKIQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKL-AKSSSKLEE 81
+Q PQ P K + L+D ++ V++ AI+ V ++ S + E
Sbjct: 91 NQGPQAQTPKWIKRTPEQMVQYLQDDRNGHLYGKHVVA--AIRIVRSLAARPDGSYNMRE 148
Query: 82 GFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141
S + +L ++ L E R + A F +++ ++ Y+P + +Y+ ++ + G+
Sbjct: 149 VMGSFVAKLSFREMCVVLKEQRGWRQ---ARDFFGWMKLQLSYQPSVIVYTILLRVYGQV 205
Query: 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF 201
+I +AE+ F E+ + G +PD M+ Y + G + Y ++ G P F
Sbjct: 206 GKIKLAEQAFLEMLEAGCEPDEVACGTMLCTYARWGRHKAMLSFYSAVQERGIIPSIAVF 265
Query: 202 TILIRNLE 209
++ +L+
Sbjct: 266 NFMLSSLQ 273
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP Y+ MI + A+ELF + ++G PD+ Y +I Y Q +A E
Sbjct: 817 KPGKVSYNIMINVYATAGLHHEAQELFQAMLRDGCSPDSLTYLALIRAYTQSFKFLEAEE 876
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
T +M+ G P + F L+ AG E
Sbjct: 877 TIMSMQNEGVLPSCVHFNQLLSAFAKAGFTE 907
Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y +I ++ + AEE ++ EG+ P + +++ + + G ++A
Sbjct: 853 PDSLTYLALIRAYTQSFKFLEAEETIMSMQNEGVLPSCVHFNQLLSAFAKAGFTEEAERV 912
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFL 235
Y T+ ++G +P + ++R + G E + VE P+RF+
Sbjct: 913 YHTLLSAGLSPDVACYRTMLRGYLDYGCVEKGITFFEQIRESVE-PDRFI 961
>gi|225454795|ref|XP_002274101.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27270-like [Vitis vinifera]
Length = 1071
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 104 RQNELDLALKVFNFVR-KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
R +LD A+++FN R V D Y+++I GK + A LF E+++EG+ P
Sbjct: 826 RGRKLDKAVEMFNKARCSGVGVSLDEKTYTNLISYYGKAGKSHEASLLFREMQEEGIKPG 885
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
Y MI VY G+ +A E ++ M GC+P LT+ LIR
Sbjct: 886 KVSYNIMINVYATAGLHHEAQELFQAMLRDGCSPDSLTYLALIR 929
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 91/213 (42%), Gaps = 6/213 (2%)
Query: 23 HQRPQISLPSGKKIQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKL-AKSSSKLEE 81
+Q PQ P K + L+D ++ V++ AI+ V ++ S + E
Sbjct: 91 NQGPQAQTPKWIKRTPEQMVQYLQDDRNGHLYGKHVVA--AIRIVRSLAARPDGSYNMRE 148
Query: 82 GFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141
S + +L ++ L E R + A F +++ ++ Y+P + +Y+ ++ + G+
Sbjct: 149 VMGSFVAKLSFREMCVVLKEQRGWRQ---ARDFFGWMKLQLSYQPSVIVYTILLRVYGQV 205
Query: 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF 201
+I +AE+ F E+ + G +PD M+ Y + G + Y ++ G P F
Sbjct: 206 GKIKLAEQAFLEMLEAGCEPDEVACGTMLCTYARWGRHKAMLSFYSAVQERGIIPSIAVF 265
Query: 202 TILIRNLENAGEEELVAAVRRDCIQYVEFPERF 234
++ +L+ V + R+ + P F
Sbjct: 266 NFMLSSLQKKSLHGKVIDLWREMVDKGVVPNSF 298
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 48/80 (60%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P +++++ M+ L K +L+ E+ +G+ P++ YT +I ++ G+++++ +T
Sbjct: 260 PSIAVFNFMLSSLQKKSLHGKVIDLWREMVDKGVVPNSFTYTVVISSLVKDGLVEESFKT 319
Query: 186 YETMKASGCTPHKLTFTILI 205
+ MK G P ++T+++LI
Sbjct: 320 FYEMKNLGFVPEEVTYSLLI 339
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP Y+ MI + A+ELF + ++G PD+ Y +I Y Q +A E
Sbjct: 883 KPGKVSYNIMINVYATAGLHHEAQELFQAMLRDGCSPDSLTYLALIRAYTQSFKFLEAEE 942
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
T +M+ G P + F L+ AG E
Sbjct: 943 TIMSMQNEGVLPSCVHFNQLLSAFAKAGFTE 973
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y +I ++ + AEE ++ EG+ P + +++ + + G ++A
Sbjct: 919 PDSLTYLALIRAYTQSFKFLEAEETIMSMQNEGVLPSCVHFNQLLSAFAKAGFTEEAERV 978
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFL 235
Y T+ ++G +P + ++R + G E + VE P+RF+
Sbjct: 979 YHTLLSAGLSPDVACYRTMLRGYLDYGCVEKGITFFEQIRESVE-PDRFI 1027
>gi|302806551|ref|XP_002985025.1| hypothetical protein SELMODRAFT_72770 [Selaginella moellendorffii]
gi|300147235|gb|EFJ13900.1| hypothetical protein SELMODRAFT_72770 [Selaginella moellendorffii]
Length = 120
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ +I LGK K+ A +LF E+ GL DT YT +I LQ G I +A Y+TM
Sbjct: 3 YTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMT 62
Query: 191 ASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
+ GC P +T + +I L AG + AAVR
Sbjct: 63 SQGCVPDVVTLSTMIDGLSKAG--RIKAAVR 91
>gi|225439358|ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g06400, mitochondrial-like [Vitis vinifera]
Length = 1048
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 63/117 (53%)
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
LAL+ FN+V+ Y+ M+ + G+ K+ + E+L E++++G D + +T +
Sbjct: 187 LALRFFNWVKFRNGGCHTTRTYNTMLYIAGEAKEFGLVEKLIGEMEEKGCKRDIKTWTIL 246
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
I Y + +I KA+ E M SGC P + ILIR+L NA + ++ ++ +Q
Sbjct: 247 ISHYGKAKLIGKALLILEKMWKSGCEPDVAAYMILIRSLCNAQKADIALEFYKEMVQ 303
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D +Y ++ L + ++ A E +K+ G+ P VYT +I + + + KA+ET+
Sbjct: 872 DQYIYGSLVHGLLRRGRLKEALEKVDSMKQIGIHPTVHVYTSLIVHFFKEKQMRKALETF 931
Query: 187 ETMKASGCTPHKLTFTILIRN 207
+ MK GC P +T++ LIR
Sbjct: 932 QKMKEEGCEPTIVTYSALIRG 952
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG--LDPDTRVYTE 168
AL F++V K Y Y+ I + G +K LF E++++G + PDT +T
Sbjct: 680 ALLFFSWVGKRDGYSHTTETYNMGIKISGCSKNFRSMRNLFFEMRRKGHPVTPDT--WTI 737
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
MI Y + G+ + A+ + MKA+ C P+ T+ LI
Sbjct: 738 MIMQYGRAGLTEIALRNFAEMKANDCKPNGSTYKYLI 774
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K++ P + +Y+ +I+ K KQ+ A E F ++K+EG +P Y+ +I ++ +G
Sbjct: 900 KQIGIHPTVHVYTSLIVHFFKEKQMRKALETFQKMKEEGCEPTIVTYSALIRGHMAMGNF 959
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
A + ++ G P T+++ I L G+ E
Sbjct: 960 VDARNVFGLLQLKGPFPDFKTYSMFISCLCKVGKSE 995
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+N++ A V + E Y P +S Y++++ L + + +L+ E+ + G++PD+
Sbjct: 426 RRNDIPKAFDVLQTM-TESGYLPTISTYTELMQHLFRLNEYQKGCKLYDEMLERGVEPDS 484
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
T M+ +++ I +A + + +M+ G ++++ I+ L
Sbjct: 485 VAITAMVAGHVRQNHIFEAWKVFNSMQERGIRATWKSYSVFIKEL 529
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
++ ++ AL+ F +++E +P + YS +I A +F L+ +G PD
Sbjct: 920 KEKQMRKALETFQKMKEE-GCEPTIVTYSALIRGHMAMGNFVDARNVFGLLQLKGPFPDF 978
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+ Y+ I +VG ++A++ M SG P + F ++ L G+ L V
Sbjct: 979 KTYSMFISCLCKVGKSEEALQLLSEMLDSGIIPSTINFRTVMFGLNREGKHSLANIV 1035
>gi|356557251|ref|XP_003546931.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Glycine max]
Length = 808
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+Q+++ ALK+F + K +KP++ Y+ +I K + AE++F +K L P+
Sbjct: 563 KQHDMSSALKMFGQMMKH-KFKPNVITYTSLINGFCKKADMIRAEKVFRGMKSFDLVPNV 621
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
YT ++G + + G +KA +E M +GC P+ TF LI L N ++
Sbjct: 622 VTYTTLVGGFFKAGKPEKATSIFELMLMNGCPPNDATFHYLINGLTNTATSPVL 675
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 49/101 (48%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K V + PD YS +I K ++ A ++F ++ K P+ YT +I + + +
Sbjct: 543 KNVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADM 602
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+A + + MK+ P+ +T+T L+ AG+ E ++
Sbjct: 603 IRAEKVFRGMKSFDLVPNVVTYTTLVGGFFKAGKPEKATSI 643
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + Y +I K + ++L E+ GL+ + +V+ +I + G++ KA ET
Sbjct: 269 PTVETYGALINGFCKAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEFKYGLVTKAAET 328
Query: 186 YETMKASGCTPHKLTFTILIR 206
M GC P T+ +I
Sbjct: 329 MRRMAEMGCGPDITTYNTMIN 349
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E+ PD++ Y+ MI K +I A+E + K+ GL P+ YT ++ Y + G
Sbjct: 334 EMGCGPDITTYNTMINFSCKGGRIKEADEFLEKAKERGLLPNKFSYTPLMHAYCKQGDYV 393
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
KA + G P +++ I + GE ++ VR ++ FP+
Sbjct: 394 KAAGMLFRIAEIGEKPDLVSYGAFIHGVVVHGEIDVALMVREKMMEKGVFPD 445
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Query: 105 QNELDLALKVFNFVRKEVWYK---PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
E+D+AL VR+++ K PD +Y+ ++ L KN + + L E+ + P
Sbjct: 424 HGEIDVAL----MVREKMMEKGVFPDAQIYNVLMSGLCKNGRFPAMKLLLSEMLDRNVQP 479
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
D V+ ++ +++ G +D+A++ ++ + G P + + +I+ G+
Sbjct: 480 DVYVFATLMDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGK 531
>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 528
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 15/162 (9%)
Query: 59 LSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFV 118
L+SEA+ A + M E + + ++ + L+ L RR E A F+ +
Sbjct: 192 LASEAVHAFNRM----------EDYNCKPDKIAFSILISILCRKRRATE---AQSFFDSL 238
Query: 119 RKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM 178
+ + ++PD+ +Y++++ + I AE +F E+K G P+ YT +I + G
Sbjct: 239 KDK--FEPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVYTYTIVIDALCRCGQ 296
Query: 179 IDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
I +A + + M GC P+ +TF L+R AG E V V
Sbjct: 297 ITRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQV 338
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 46/95 (48%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL FN+ + Y++MI + GK + + ++ +K ++ ++ +I
Sbjct: 125 ALSFFNWATSRPGFTHHPEPYNEMIDLAGKVRNFDLGWQVIDLMKARNVEISIETFSILI 184
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y++ G+ +A+ + M+ C P K+ F+ILI
Sbjct: 185 RRYVRAGLASEAVHAFNRMEDYNCKPDKIAFSILI 219
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 48/88 (54%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
+V +P+ +++++ + K + +++ ++K+ G PDT Y +I + + G +D
Sbjct: 309 DVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMGCPPDTVTYNFLIESHCKDGNLD 368
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNL 208
+A++ +M GC+P+ TF L ++
Sbjct: 369 EALKVLNSMVKKGCSPNASTFNGLFGSI 396
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 112 LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIG 171
L+V+N + K + PD Y+ +I K+ + A ++ + K+G P+ + + G
Sbjct: 336 LQVYNQM-KRMGCPPDTVTYNFLIESHCKDGNLDEALKVLNSMVKKGCSPNASTFNGLFG 394
Query: 172 VYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
++ ++ A Y MK C + +T+ IL+R + ++V ++++
Sbjct: 395 SIAKLRDVNGAHRLYAKMKELKCKANTVTYNILMRMFVDTKSTDMVLKLKKE 446
>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Cucumis sativus]
Length = 1000
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 77/152 (50%), Gaps = 14/152 (9%)
Query: 62 EAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKE 121
EA + H M +E G+ + + L+D L + +R LDL LKV + + +
Sbjct: 698 EAQEVFHKM--------VERGYNPNV--YTYSSLIDRLFKDKR---LDLVLKVLSKMLEN 744
Query: 122 VWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDK 181
P++ +Y++MI L K + A +L ++++G P+ YT MI + + G +DK
Sbjct: 745 SC-APNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDK 803
Query: 182 AMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+E + M + GC P+ +T+T+LI + G
Sbjct: 804 CLELFREMGSKGCAPNFVTYTVLINHCCATGH 835
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 11/124 (8%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYK-----------PDLSLYSDMILMLGKNK 142
++L T L + N + A + F + E YK PD S YS++I L
Sbjct: 444 EMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNAS 503
Query: 143 QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFT 202
++ A LF E+K G+ PD YT +I + + G+I +A + M GC P +T+T
Sbjct: 504 RVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYT 563
Query: 203 ILIR 206
LI
Sbjct: 564 TLIH 567
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I K I A E+ ++G +P YT +I YL+ + A E
Sbjct: 522 PDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANEL 581
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+E M A GC P+ +T+T LI +G E
Sbjct: 582 FELMIAKGCFPNVITYTALIDGYCKSGNIE 611
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ +LD A +VF+ + E Y P++ YS +I L K+K++ + ++ ++ + P+
Sbjct: 692 KAAKLDEAQEVFHKMV-ERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNI 750
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+YTEMI +V D+A + M+ GC P+ +T+T +I AG+
Sbjct: 751 VIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGK 800
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
E+ G PDT Y+E+IG ++ A ++ MK +G P T+TILI AG
Sbjct: 479 EMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAG 538
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
++D+ K+ N V + KP++ Y ++ L K ++ A +L + +G +P+T VY
Sbjct: 628 DVDMYFKIKNNVAE----KPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVY 683
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+I + + +D+A E + M G P+ T++ LI L +LV V
Sbjct: 684 DALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKV 737
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P + Y+ +I K K++++A ELF + +G P+ YT +I Y + G I+KA +
Sbjct: 556 EPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQ 615
Query: 185 TYETMKASGCTP 196
Y M+ P
Sbjct: 616 IYARMRGDADIP 627
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 90 LLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEE 149
++ +++D L+++ + +E A K+ + +E KP++ Y+ MI GK ++ E
Sbjct: 751 VIYTEMIDGLSKVAKTDE---AYKLM-LMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLE 806
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
LF E+ +G P+ YT +I G +D+A E MK + H ++ +I
Sbjct: 807 LFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVI 862
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 18/117 (15%)
Query: 90 LLKADLLDTLTELRRQ-NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAE 148
L+AD LDT + R+ +EL L++ F L ++ + +GK +
Sbjct: 251 FLRADKLDTAQLVHREMSELGLSMDEFT-----------LGFFAQALCKVGKWR------ 293
Query: 149 ELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
E ++KE P+T +Y +MI + ++AM+ M+++ C P+ T+ IL+
Sbjct: 294 EALSLIEKEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILL 350
>gi|356547426|ref|XP_003542113.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Glycine max]
Length = 825
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+Q+++ ALK+F + K +KP++ Y+ +I K + AE++F +K L P+
Sbjct: 567 KQHDMSSALKMFGQMMKH-KFKPNVITYTSLINGFCKKADMIRAEKVFSGMKSFDLVPNV 625
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210
YT ++G + + G ++A +E M +GC P+ TF LI L N
Sbjct: 626 VTYTTLVGGFFKAGKPERATSIFELMLMNGCLPNDATFHYLINGLTN 672
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 48/101 (47%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
V + PD YS +I K ++ A ++F ++ K P+ YT +I + + +
Sbjct: 547 NSVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADM 606
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+A + + MK+ P+ +T+T L+ AG+ E ++
Sbjct: 607 IRAEKVFSGMKSFDLVPNVVTYTTLVGGFFKAGKPERATSI 647
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 37/81 (45%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + Y +I K + ++L E+ GL+ + +V+ +I + G++ +A E
Sbjct: 273 PTVETYGALINGFCKAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEYKYGLVTEAAEM 332
Query: 186 YETMKASGCTPHKLTFTILIR 206
M GC P T+ I+I
Sbjct: 333 LRRMAEMGCGPDITTYNIMIN 353
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 106 NELDLALKVFNFVRKEVWYK---PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
E+D+AL VR+++ K PD +Y+ ++ L K +I + L E+ + PD
Sbjct: 429 GEIDVAL----MVREKMMEKGVFPDAQIYNILMSGLCKKGRIPAMKLLLSEMLDRNVQPD 484
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
V+ +I +++ G +D+A++ ++ + G P + + +I+ G+
Sbjct: 485 VYVFATLIDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGK 535
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E+ PD++ Y+ MI K +I A+EL + K+ GL P+ YT ++ Y + G
Sbjct: 338 EMGCGPDITTYNIMINFSCKGGRIEEADELLEKAKERGLLPNKFSYTPLMHAYCKKGDYV 397
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
KA + G +++ I + AGE ++ VR ++ FP+
Sbjct: 398 KASGMLFRIAEIGEKSDLVSYGAFIHGVVVAGEIDVALMVREKMMEKGVFPD 449
>gi|295830911|gb|ADG39124.1| AT5G21222-like protein [Capsella grandiflora]
Length = 166
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+KP + Y+ ++ L + K L +++K GL PDT ++ +I + G +D+AM
Sbjct: 6 HKPSIITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAM 65
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ +E MK SGC P TF LI+ G+ E
Sbjct: 66 KIFEKMKESGCKPTTSTFNTLIKGYGKIGKLE 97
>gi|255546465|ref|XP_002514292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546748|gb|EEF48246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 608
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 6/130 (4%)
Query: 88 CRLL--KADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIA 145
CR + + L++ L + +E +L N V E ++P L Y+ ++ L K K
Sbjct: 55 CRTVHSRTKLMNILIGKGKPHEANLIFD--NLV--EDGHRPTLITYTTLVAALTKLKHFE 110
Query: 146 MAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
L ++++ G+ PD+ +Y MI + + G + +AM+ ++ MK +GC P TF LI
Sbjct: 111 SIFLLISKVEENGMKPDSILYNAMINAFSESGNVKEAMKIFQKMKDTGCKPTTSTFNTLI 170
Query: 206 RNLENAGEEE 215
+ NAG+ E
Sbjct: 171 KGYGNAGKPE 180
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 49/106 (46%)
Query: 115 FNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYL 174
F + KE+ P+L +++ +I +E +++ G+ PD ++ ++ +
Sbjct: 291 FVYRMKELGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEYGVKPDVITFSTIMNAWS 350
Query: 175 QVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
G++DK E + M +G P F+IL + AGE E +V
Sbjct: 351 SAGLMDKCQEIFNDMAKAGIEPDIHAFSILAKGYVRAGETENAESV 396
Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 4/121 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+ ++ + +D AL + +E KPD+ +S ++ + +E+F ++
Sbjct: 310 LIKGFLDITDTDGVDEALTLM----EEYGVKPDVITFSTIMNAWSSAGLMDKCQEIFNDM 365
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
K G++PD ++ + Y++ G + A +M SG P+ + T +I +AG+
Sbjct: 366 AKAGIEPDIHAFSILAKGYVRAGETENAESVLTSMAKSGVRPNVVICTTIISGWCSAGKM 425
Query: 215 E 215
E
Sbjct: 426 E 426
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD LY+ MI ++ + A ++F ++K G P T + +I Y G ++ ++
Sbjct: 125 KPDSILYNAMINAFSESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYGNAGKPEEGLK 184
Query: 185 TYETMKASGCT-PHKLTFTILIR------NLE---NAGEEELVAAVRRDCIQY 227
M G P+ T+ IL+R N+E N + + + ++ D + Y
Sbjct: 185 MLHLMSLDGSVKPNDRTYNILVRAWCSKKNIEEAWNVLHKMVASGIQPDVVTY 237
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
+D ++FN + K +PD+ +S + + + AE + + K G+ P+ + T
Sbjct: 355 MDKCQEIFNDMAK-AGIEPDIHAFSILAKGYVRAGETENAESVLTSMAKSGVRPNVVICT 413
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+I + G ++ A YE M G +P+ TF LI
Sbjct: 414 TIISGWCSAGKMENAKMVYEKMCEIGISPNLKTFETLI 451
>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 806
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 6/141 (4%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
+D A+ V+N + K+ +P+++ YS +I K+ + A E + ++ G P+ VY
Sbjct: 364 NMDEAISVWNQMEKDS-IRPNVTTYSTIIYGFAKSGDLVSACETWNKMINCGCRPNVVVY 422
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV-----R 221
T M+ V Q+ M D+A + + M + GC P +TF I+ L AG E V +
Sbjct: 423 TCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVLDQMEK 482
Query: 222 RDCIQYVEFPERFLEEVYQKH 242
+C+ + L+ +++ +
Sbjct: 483 YECLPNIRTYNELLDGLFRAN 503
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 103 RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
RR N + LK+F +R E +P + +Y+ ++ L M L+ +K EGL+P+
Sbjct: 120 RRSNLGEQGLKMFYRIR-EFGCEPSVKIYNLVLDALLSQNLFKMINALYNNMKSEGLEPN 178
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
Y ++ Q G +D A + M GC P +++T +I ++ G+
Sbjct: 179 VFTYNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTVISSMCKLGD 229
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 44/85 (51%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++P + +Y+ +I + K + A +L E+ G+DP+ Y+ +I +G ++ ++
Sbjct: 240 FEPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMGNVELSL 299
Query: 184 ETYETMKASGCTPHKLTFTILIRNL 208
+ M GC P+ TFT LI+
Sbjct: 300 AVFGRMFVRGCRPNVQTFTSLIKGF 324
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
L L QN + ++N ++ E +P++ Y+ ++ L +N ++ A +L E+ +
Sbjct: 150 VLDALLSQNLFKMINALYNNMKSE-GLEPNVFTYNVLLKALCQNGKVDGACKLLVEMSNK 208
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAME 184
G DPD YT +I ++G +DKA E
Sbjct: 209 GCDPDDVSYTTVISSMCKLGDVDKARE 235
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A+ ++N + +E P++ Y+ +I L + + A ++ +++K+ + P+ Y+ +I
Sbjct: 333 AVGLWNLMIRE-GVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTII 391
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ + G + A ET+ M GC P+ + +T ++
Sbjct: 392 YGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMV 426
>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
Length = 1320
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 72/133 (54%), Gaps = 10/133 (7%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R ELD LK+ + ++ + KPD +Y+++IL+L KN ++ AE+L ++K G+ PD
Sbjct: 289 RIGELDKVLKLVDELKGKG-LKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDN 347
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE---------E 214
VYT +I + ++G + A + ++ M+ P +T+T +I + +G+ E
Sbjct: 348 VVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNE 407
Query: 215 ELVAAVRRDCIQY 227
LV + D + Y
Sbjct: 408 MLVKGLEPDEVTY 420
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 5/120 (4%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A K+F+ +R++ PD+ Y+ +I + K+ ++ A E+F E+ +GL+PD YT +I
Sbjct: 366 ACKLFDEMRRKK-IVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALI 424
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRRDCIQ 226
Y + G + +A + M G TP+ +T+T L L GE EL+ + R +Q
Sbjct: 425 DGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQ 484
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 102 LRRQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD 160
L + E+D+A ++ + RK + +P++ Y+ ++ L K I +L E+ G
Sbjct: 462 LCKNGEIDVANELLHEMSRKGL--QPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFY 519
Query: 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
PDT YT ++ Y ++G + KA E M P +TF +L+ +G
Sbjct: 520 PDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSG 571
>gi|295830921|gb|ADG39129.1| AT5G21222-like protein [Neslia paniculata]
Length = 166
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+KP + Y+ ++ L + K L +++K GL PDT ++ +I + G +D+AM
Sbjct: 6 HKPSIITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAM 65
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ +E MK SGC P TF LI+ G+ E
Sbjct: 66 KIFEQMKESGCKPTTSTFNTLIKGYGKLGKLE 97
>gi|297844992|ref|XP_002890377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336219|gb|EFH66636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 537
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 69/126 (54%), Gaps = 5/126 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
++ L+ RR +E A F+ ++ ++PD+ +Y++++ + +I+ AE++F ++
Sbjct: 227 VISNLSRKRRASE---AQSFFDSLKDR--FEPDVIVYTNLVRGWCRAGEISEAEKVFKDM 281
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
K G++P+ Y+ +I + G I +A + + M SGC P+ +TF L+R AG
Sbjct: 282 KLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRP 341
Query: 215 ELVAAV 220
E V V
Sbjct: 342 EKVLQV 347
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 85 SRICRLLKADLLDTLTELRRQNELDLALKVFNF-VRKEVWYKPDLSLYSDMILMLGKNKQ 143
SRI + +++ +R L +L FN+ ++ + + Y++MI + GK +Q
Sbjct: 107 SRISPSVVRCVIEKCGSVRHGIPLHQSLAFFNWATSRDDYDQKSPHPYNEMIDLAGKVRQ 166
Query: 144 IAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTI 203
+A L +K ++ +T +I Y++ G+ +A+ + M+ GC P ++ F+I
Sbjct: 167 FDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDQIAFSI 226
Query: 204 LIRNL 208
+I NL
Sbjct: 227 VISNL 231
>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 11/147 (7%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
LT LR+ ++D AL+VF ++K+ P+LS Y+ +I ML + ++ A EL ++K G
Sbjct: 350 LTCLRKMGKVDEALRVFEEMKKDA--APNLSTYNILIDMLCRAGKLDCAFELRDSMQKAG 407
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG------ 212
L P+ R M+ + +D+A +E M CTP ++TF LI L G
Sbjct: 408 LFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAY 467
Query: 213 ---EEELVAAVRRDCIQYVEFPERFLE 236
E+ L + R + I Y + F
Sbjct: 468 KIYEKMLDSDCRTNSIVYTSLIKNFFN 494
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ LY+ I GK ++ MA + F E++ GL PD YT MIGV + +D+A+E +
Sbjct: 237 DIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMF 296
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGE 213
E ++ + P + +I +AG+
Sbjct: 297 EHLEKNRRVPCTYAYNTMIMGYGSAGK 323
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
N D+ L +F + +E+ Y+P + L++ +I K ++ A L E+K LD D +
Sbjct: 182 NHSDMMLTLFQQM-QELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVL 240
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y I + +VG +D A + + ++A+G P ++T+T +I
Sbjct: 241 YNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMI 280
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 74/142 (52%), Gaps = 10/142 (7%)
Query: 71 KLAKSSSKLEE----GFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKP 126
K+ K+ LEE GF+ + + ++D L ++ R +E + + R E+
Sbjct: 602 KVNKAYQLLEEMKTKGFEPTV--VTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIEL---- 655
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
++ +YS +I GK +I A + EL ++GL P+ + ++ ++ I++A+ +
Sbjct: 656 NVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCF 715
Query: 187 ETMKASGCTPHKLTFTILIRNL 208
++MK CTP+++T+ ILI L
Sbjct: 716 QSMKELKCTPNQVTYGILINGL 737
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LLD L + NE AL F + KE+ P+ Y +I L K ++ A + E+
Sbjct: 698 LLDALVKAEEINE---ALVCFQSM-KELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEM 753
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
+K+G+ P T YT MI + G I +A ++ KA+G P + +I L N
Sbjct: 754 QKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNG 810
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
++D+A K F+ + KPD Y+ MI +L K ++ A E+F L+K P T Y
Sbjct: 253 KVDMAWKFFHEIEAN-GLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAY 311
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
MI Y G D+A E +A G P + + ++ L G+
Sbjct: 312 NTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGK 358
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PD YS +I L K ELF +K++G DTR Y +I + + G ++KA
Sbjct: 548 FVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAY 607
Query: 184 ETYETMKASGCTPHKLTFTILIRNL 208
+ E MK G P +T+ +I L
Sbjct: 608 QLLEEMKTKGFEPTVVTYGSVIDGL 632
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 11/110 (10%)
Query: 115 FNFVRKEVWYK-----------PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
FN RKE +K PDL L + + + K + +F E+K PD
Sbjct: 493 FNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDA 552
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
R Y+ +I ++ G ++ E + +MK GC + I+I G+
Sbjct: 553 RSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGK 602
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++P + Y +I L K ++ A LF E K + ++ + +Y+ +I + +VG ID+A
Sbjct: 618 FEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAY 677
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGE 213
E + G TP+ T+ L+ L A E
Sbjct: 678 LILEELMQKGLTPNVYTWNSLLDALVKAEE 707
>gi|295830915|gb|ADG39126.1| AT5G21222-like protein [Capsella grandiflora]
Length = 166
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+KP + Y+ ++ L + K L +++K GL PDT ++ +I + G +D+AM
Sbjct: 6 HKPSIITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAM 65
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ +E MK SGC P TF LI+ G+ E
Sbjct: 66 KIFEKMKESGCKPTTSTFNTLIKGYGKIGKLE 97
>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
Length = 814
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 57/105 (54%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A +VF+ + + PD +L++ M+ L K K++ A E+F +++K G PD Y MI
Sbjct: 208 AFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMI 267
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ G +A++ + M A C P ++T+ IL+ +L AG E
Sbjct: 268 DGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLE 312
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 14/173 (8%)
Query: 60 SSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVR 119
+ EA++ + M LAK+ E + + L KA L+ EL R V
Sbjct: 276 AQEALKVLDNM-LAKACVPTEVTYGILVNSLCKAGTLERAEELFR-------------VM 321
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
++P+ +Y+ +I K+ ++ A LF E+ + G PD +T MI + G
Sbjct: 322 AASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNF 381
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
++A +++E M GC P+ +T+T +I+ L G + + I + FP+
Sbjct: 382 EQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPD 434
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E Y+PD+ ++ MI L K+ A + F E+ + G P+ YT +I ++G +
Sbjct: 358 EAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVA 417
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAG 212
A + M A GC P +T+ L+ G
Sbjct: 418 NAFRIMKGMIAHGCFPDSVTYICLLDGFCKLG 449
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + E+D A+K+ W D+ Y+ + L Q+ A LF E+ ++G P
Sbjct: 588 LCKIGEVDRAVKMLEEASSRGW-NADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAP 646
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
D Y +I ++V ++ A + ++ M G P T+T L++ L +AG
Sbjct: 647 DAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGN 698
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
LR A+ F + ++ ++ D+ Y+ ++ +L K + + E+ K G+ P
Sbjct: 93 LRSLKVTGTAISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAP 152
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+T + +I + + D A+ +E MK C P TF IL+ L AG +E
Sbjct: 153 NTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDE 206
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+N ++ A + + + K V Y PD Y+ + + L K ++ A ++ E G + D
Sbjct: 555 RENRVERAFALLHDLEK-VGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADV 613
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
YT + G +D+A+ ++ M G P + +I L
Sbjct: 614 VAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGL 658
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 100 TELRRQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
T L Q ++D A+ +F VR+ PD + Y +I L K K++ A + F E+ +G
Sbjct: 621 TGLCYQGQVDRAVSLFQEMVRQ--GGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKG 678
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG 193
P YT ++ G +D+A +E+M A G
Sbjct: 679 QKPTVATYTALVQALCHAGNVDEAFHRFESMLARG 713
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ--IAMAEELFCELKK 156
+ L + LD A ++F + E KPD + Y+ +I L ++++ + A L +L+K
Sbjct: 513 IVGLCKTGRLDEACRIFQRMVSE-GCKPDATTYNILINGLCRSRENRVERAFALLHDLEK 571
Query: 157 EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
G PD YT + ++G +D+A++ E + G + +T L L G+
Sbjct: 572 VGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQ 628
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMA-EELFCE 153
LLD +L R LD A ++ + + K P+L LYS ++ L + ++LF +
Sbjct: 441 LLDGFCKLGR---LDEAAQLLDELDK-CSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQ 496
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
K D + +I + G +D+A ++ M + GC P T+ ILI L
Sbjct: 497 SKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGL 551
>gi|295830917|gb|ADG39127.1| AT5G21222-like protein [Capsella grandiflora]
Length = 166
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+KP + Y+ ++ L + K L +++K GL PDT ++ +I + G +D+AM
Sbjct: 6 HKPSIITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAM 65
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ +E MK SGC P TF LI+ G+ E
Sbjct: 66 KIFEKMKESGCKPTTSTFNTLIKGYGKIGKLE 97
>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
Length = 814
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 57/105 (54%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A +VF+ + + PD +L++ M+ L K K++ A E+F +++K G PD Y MI
Sbjct: 208 AFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMI 267
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ G +A++ + M A C P ++T+ IL+ +L AG E
Sbjct: 268 DGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLE 312
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 14/173 (8%)
Query: 60 SSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVR 119
+ EA++ + M LAK+ E + + L KA L+ EL R V
Sbjct: 276 AQEALKVLDNM-LAKACVPTEVTYGILVNSLCKAGTLERAEELFR-------------VM 321
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
++P+ +Y+ +I K+ ++ A LF E+ + G PD +T MI + G
Sbjct: 322 AASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNF 381
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
++A +++E M GC P+ +T+T +I+ L G + + I + FP+
Sbjct: 382 EQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPD 434
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E Y+PD+ ++ MI L K+ A + F E+ + G P+ YT +I ++G +
Sbjct: 358 EAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVA 417
Query: 181 KAMETYETMKASGCTPHKLTFTILI 205
A + M A GC P +T+ L+
Sbjct: 418 NAFRIMKGMIAHGCFPDSVTYICLL 442
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
LR A+ F + ++ ++ D+ Y+ ++ +L K + + E+ K G+ P
Sbjct: 93 LRSLKVTGTAISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAP 152
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+T + +I + + D A+ +E MK C P TF IL+ L AG +E
Sbjct: 153 NTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDE 206
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + E+D A+K+ W D+ Y+ + L Q+ A LF E+ ++G P
Sbjct: 588 LCKIGEVDRAVKMLEEASSRGW-NADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAP 646
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
D Y +I ++ ++ A + ++ M G P T+T L++ L +AG
Sbjct: 647 DAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGN 698
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 100 TELRRQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
T L Q ++D A+ +F VR+ PD + Y +I L K K++ A + F E+ +G
Sbjct: 621 TGLCYQGQVDRAVSLFQEMVRQ--GGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKG 678
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG 193
P YT ++ G +D+A +E M A G
Sbjct: 679 QKPTVATYTALVQALCHAGNVDEAFHRFEGMLARG 713
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMA-EELFCE 153
LLD +L R LD A ++ + + K P+L LYS ++ L + ++LF +
Sbjct: 441 LLDGFCKLGR---LDEAAQLLDELDK-CSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQ 496
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
K + D + +I + G +D+A ++ M + GC P T+ ILI L
Sbjct: 497 SKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGL 551
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+N ++ A + + + + V Y PD Y+ + + L K ++ A ++ E G + D
Sbjct: 555 RENRVERAFALLHDL-EMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADV 613
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
YT + G +D+A+ ++ M G P + +I L
Sbjct: 614 VAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGL 658
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 46/91 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ Y+ +I L K ++A A + + G PD+ Y ++ + ++G +D+A +
Sbjct: 397 KPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQ 456
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ + +P+ ++ L++ L + G E
Sbjct: 457 LLDELDKCSSSPNLQLYSSLVKGLCDGGSVE 487
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ--IAMAEELFCELKK 156
+ L + LD A ++F + E KPD + Y+ +I L ++++ + A L +L+
Sbjct: 513 IVGLCKTGRLDEACRIFQRMVSE-GCKPDATTYNILINGLCRSRENRVERAFALLHDLEM 571
Query: 157 EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
G PD YT + ++G +D+A++ E + G + +T L L G+
Sbjct: 572 VGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQ 628
>gi|295830913|gb|ADG39125.1| AT5G21222-like protein [Capsella grandiflora]
Length = 166
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+KP + Y+ ++ L + K L +++K GL PDT ++ +I + G +D+AM
Sbjct: 6 HKPSIITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAM 65
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ +E MK SGC P TF LI+ G+ E
Sbjct: 66 KIFEKMKESGCKPTTSTFNTLIKGYGKJGKLE 97
>gi|295830909|gb|ADG39123.1| AT5G21222-like protein [Capsella grandiflora]
gi|295830919|gb|ADG39128.1| AT5G21222-like protein [Capsella grandiflora]
Length = 166
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+KP + Y+ ++ L + K L +++K GL PDT ++ +I + G +D+AM
Sbjct: 6 HKPSIITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAM 65
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ +E MK SGC P TF LI+ G+ E
Sbjct: 66 KIFEKMKESGCKPTTSTFNTLIKGYGKJGKLE 97
>gi|224142151|ref|XP_002324422.1| predicted protein [Populus trichocarpa]
gi|222865856|gb|EEF02987.1| predicted protein [Populus trichocarpa]
Length = 453
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 68/130 (52%), Gaps = 6/130 (4%)
Query: 88 CRLLKA--DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIA 145
CR++++ L++ L + E A +FN + E +KP L Y+ ++ L + K
Sbjct: 10 CRIVRSRTKLMNVLIGKGKPRE---AHSIFNSLMDE-GHKPTLITYTTLVAALTRQKLFK 65
Query: 146 MAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
L ++++ G+ PD+ ++ +I + + G + +AM+ + MK SGC P TF LI
Sbjct: 66 SILRLISKVEENGMKPDSILFNSIINAFSESGNMKEAMKLFRKMKESGCKPTTSTFNTLI 125
Query: 206 RNLENAGEEE 215
+ NAG+ E
Sbjct: 126 KGYGNAGKTE 135
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 70/145 (48%), Gaps = 10/145 (6%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L RQ L++ + V +E KPD L++ +I ++ + A +LF ++K+ G P
Sbjct: 58 LTRQKLFKSILRLISKV-EENGMKPDSILFNSIINAFSESGNMKEAMKLFRKMKESGCKP 116
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR---NLENAGE----- 213
T + +I Y G ++A++ E ++ G P++ T+ IL+R N EN E
Sbjct: 117 TTSTFNTLIKGYGNAGKTEEALKLLEFLQDGGVKPNQRTYNILVRAWCNKENMEEAWNMV 176
Query: 214 -EELVAAVRRDCIQYVEFPERFLEE 237
+ + + ++ D + Y + E+
Sbjct: 177 YKMVASGMQPDAVTYNTLARAYAEK 201
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 51/117 (43%)
Query: 115 FNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYL 174
F F KE+ P+L +++ +I +E+ +++ G+ PD ++ ++ +
Sbjct: 245 FVFRMKELGVLPNLFVFNSLIKGFLDTMDTEGVDEVLTLMEENGVRPDVVTFSTIMNAWS 304
Query: 175 QVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFP 231
G +DK E + M + P F+IL + AGE E ++ +Y P
Sbjct: 305 SAGRMDKCKEIFNDMVKAEIEPDIHAFSILAKGYVRAGEPEKAESILTSMRKYGVHP 361
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 14/192 (7%)
Query: 27 QISLPSGKKIQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSS----SKLEE- 81
+ + GK +A ++ L D KP + + + + A+ KL KS SK+EE
Sbjct: 21 NVLIGKGKPREAHSIFNSLMDEGHKP---TLITYTTLVAALTRQKLFKSILRLISKVEEN 77
Query: 82 GFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141
G + +L +++ +E E A+K+F + KE KP S ++ +I G
Sbjct: 78 GMKPD--SILFNSIINAFSESGNMKE---AMKLFRKM-KESGCKPTTSTFNTLIKGYGNA 131
Query: 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF 201
+ A +L L+ G+ P+ R Y ++ + +++A M ASG P +T+
Sbjct: 132 GKTEEALKLLEFLQDGGVKPNQRTYNILVRAWCNKENMEEAWNMVYKMVASGMQPDAVTY 191
Query: 202 TILIRNLENAGE 213
L R GE
Sbjct: 192 NTLARAYAEKGE 203
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 46/91 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ +S ++ ++ +E+F ++ K ++PD ++ + Y++ G +KA
Sbjct: 290 RPDVVTFSTIMNAWSSAGRMDKCKEIFNDMVKAEIEPDIHAFSILAKGYVRAGEPEKAES 349
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+M+ G P+ + T +I +AG+ E
Sbjct: 350 ILTSMRKYGVHPNVVICTTVISGWCSAGKME 380
>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
Length = 698
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R E+D A ++ + +R E KP+L ++ ++ + K ++ A ++F E+ KEGL PD
Sbjct: 204 RAGEVDRAERLVDMMR-EGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDG 262
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
Y ++G Y +VG +A+ + M G P +TFT LI + AG E + R+
Sbjct: 263 VSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVRE 322
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD YS +I +L + K++ A LF + GL PD YT +I + + G +++A+
Sbjct: 435 PDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSL 494
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
++ M +G P +T+++LI L +
Sbjct: 495 HDEMVKAGVLPDVVTYSVLINGLSKS 520
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y P + Y+ ++L L + + A F + +G+ P+ Y ++ G +A+
Sbjct: 119 YAPSVLAYNAVLLAL-SDASLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEAL 177
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGE 213
M+ +GC P+ +T+ L+ AGE
Sbjct: 178 SVLRDMRGAGCDPNAVTYNTLVAAFCRAGE 207
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEE---LFCELKKEGLDPDTRVYT 167
A KVF+ + KE PD Y+ ++ G ++ + E +F E+ ++G+ PD +T
Sbjct: 246 ARKVFDEMVKE-GLAPDGVSYNTLV---GGYCKVGCSHEALSVFAEMTRKGIMPDVVTFT 301
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+I V + G +++A+ M+ G +++TFT LI
Sbjct: 302 SLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALI 339
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 42/90 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+ ++ L A + +++ G DP+ Y ++ + + G +D+A
Sbjct: 155 PNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERL 214
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ M+ G P+ +TF ++ + AG E
Sbjct: 215 VDMMREGGLKPNLVTFNSVVNGICKAGRME 244
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ YS ++ KN A +L ++ + G+ PD Y+ +I V + + A
Sbjct: 399 KPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHV 458
Query: 185 TYETMKASGCTPHKLTFTILIR------NLENA---GEEELVAAVRRDCIQY 227
++ M + G P ++T+T LI N+E A +E + A V D + Y
Sbjct: 459 LFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTY 510
>gi|255549794|ref|XP_002515948.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544853|gb|EEF46368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 706
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 52/88 (59%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ +I LGKN + A F E++++GL+PD Y+ +I + + ++ A
Sbjct: 351 KPDIISYNSLINCLGKNGDLDEAHIRFREMQEKGLNPDVVTYSTLIECFGKTDKVEMACR 410
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
++ M A GC P+ +T+ IL+ LE +G
Sbjct: 411 LFDEMLAEGCFPNIVTYNILLDCLERSG 438
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 54/88 (61%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y D+ ++ ++ L K++++ A ++F ++KK+ +PD YT MI + ++G +D+++
Sbjct: 73 YTLDIFAFNMLLDALAKDQKVDQAFKVFEDMKKKHCEPDEYTYTIMIRMTGRIGKLDESL 132
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENA 211
+E M GC+P+ + + +I+ L N+
Sbjct: 133 ALFEEMLNKGCSPNLIAYNTMIQALANS 160
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L + ++D A KVF ++K+ +PD Y+ MI M G+ ++ + LF E+ +G
Sbjct: 84 LDALAKDQKVDQAFKVFEDMKKK-HCEPDEYTYTIMIRMTGRIGKLDESLALFEEMLNKG 142
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
P+ Y MI M+DK + + M C P++ T+++++ L G+
Sbjct: 143 CSPNLIAYNTMIQALANSRMVDKTILLFSKMMEKNCRPNEFTYSVILTLLAAEGQ 197
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D +Y+ + LG+ KQI+ +L+ ++K +G PD Y +I + + G + +A++ +
Sbjct: 283 DTIMYNTVFTALGRLKQISHLYDLYEKMKLDGPLPDIFTYNILISSFGRAGKVYEAIKIF 342
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGE 213
E ++ S C P +++ LI L G+
Sbjct: 343 EELENSDCKPDIISYNSLINCLGKNGD 369
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
++ E+K++G D + ++ + +D+A + +E MK C P + T+TI+IR
Sbjct: 64 VYLEMKRKGYTLDIFAFNMLLDALAKDQKVDQAFKVFEDMKKKHCEPDEYTYTIMIR 120
>gi|224149779|ref|XP_002336862.1| predicted protein [Populus trichocarpa]
gi|222837029|gb|EEE75408.1| predicted protein [Populus trichocarpa]
Length = 370
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 82/162 (50%), Gaps = 15/162 (9%)
Query: 59 LSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFV 118
L++EAI A + M E + + ++ + L+ L RR +E A + F+ +
Sbjct: 197 LAAEAIHAFNRM----------EDYNCKPDKIAFSILISILCRKRRASE---AQEFFDSL 243
Query: 119 RKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM 178
+ + ++PD+ +Y++++ + I+ AE +F E+K G+ P+ Y+ +I + G
Sbjct: 244 KDK--FEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQ 301
Query: 179 IDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
I +A + + M +GC P+ +T+ L+R AG E V V
Sbjct: 302 ITRAHDVFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQV 343
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ YS +I L + QI A ++F E+ G P++ Y ++ ++++ G +K ++
Sbjct: 283 KPNVYTYSIVIDSLCRCGQITRAHDVFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQ 342
Query: 185 TYETMKASGCTPHKLTFTILI 205
Y MK GC P +T+ LI
Sbjct: 343 VYNQMKRLGCEPDTVTYNFLI 363
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/94 (20%), Positives = 45/94 (47%)
Query: 112 LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIG 171
L FN+ + + +++M+ GK + +A + +K ++ ++ ++
Sbjct: 131 LAFFNWASYQDGFDKSPEAFNEMVDFAGKVRMFDLAWHVIDLMKARDVEITVETFSILMR 190
Query: 172 VYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y++ G+ +A+ + M+ C P K+ F+ILI
Sbjct: 191 RYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILI 224
>gi|225447241|ref|XP_002272784.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g73710-like [Vitis vinifera]
Length = 1008
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L+ Q+ + L+VF +++ + Y P++ Y+ ++ +LG+ ++ + E+ K G+ P
Sbjct: 158 LKEQSSWERVLRVFEWIKSQEDYVPNVIHYNVVLRVLGRAQKWDELRLCWIEMAKNGVLP 217
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
Y ++ VY + G++ +A+ + MK G P ++ ++R L++AGE +
Sbjct: 218 TNNTYGMLVDVYGKAGLVKEALLWIKHMKLRGVFPDEVAMNTVVRVLKDAGEFDWADRFY 277
Query: 222 RD-CIQYVEFPERFLEEV 238
RD C+ VE + LE V
Sbjct: 278 RDWCVGKVELGDFDLESV 295
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D S Y+ I G + I A ++F +++ EGL+PD Y + G Y + GM++ Y
Sbjct: 900 DSSFYNVAIYAYGASGSIDKALKMFMKMQDEGLEPDLVTYINLAGCYGKAGMLEGLKRIY 959
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
+K P++ F +I +A +L V ++
Sbjct: 960 SQLKYREIEPNESLFKAIIDAYRSAKRHDLAELVSQE 996
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%)
Query: 119 RKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM 178
++++ K D+ Y+ M+ GK K A LF ++ G P+ Y +I ++ +
Sbjct: 545 KRDLGQKKDVVEYNVMVKAYGKAKLYDKAFSLFKGMRNHGTWPNESTYNSLIQMFSGGDL 604
Query: 179 IDKAMETYETMKASGCTPHKLTFTILI 205
+D+A M+ G P LTF+ +I
Sbjct: 605 VDEARGILAEMQKMGFKPQCLTFSAVI 631
>gi|115444491|ref|NP_001046025.1| Os02g0170000 [Oryza sativa Japonica Group]
gi|49388067|dbj|BAD25179.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535556|dbj|BAF07939.1| Os02g0170000 [Oryza sativa Japonica Group]
Length = 397
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
++KVFN + K + KP++ Y+ ++ + AEE+F E+++ G +PD Y ++
Sbjct: 101 SMKVFNEM-KSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALM 159
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
Y + G+ A E + M+ GC P + ++ IL+ AG E AV
Sbjct: 160 EAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAV 209
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A++V+ +++E + + ++ MI + GK KQ + ++F E+K G P+ YT ++
Sbjct: 66 AVEVYQRMKRERC-RANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALV 124
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ + G+ +KA E +E M+ +G P + L+ AG
Sbjct: 125 NAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAG 166
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E P+ ++Y+ + L K + A E++ +K+E +T +T MI VY +
Sbjct: 39 REHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQP 98
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+M+ + MK+ GC P+ T+T L+ G
Sbjct: 99 MSSMKVFNEMKSIGCKPNICTYTALVNAFAREG 131
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 147 AEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
AE + E+++ G+ P+ VY + L+ +KA+E Y+ MK C + TFT++I
Sbjct: 31 AEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMI 89
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A ++F+ + + + +PD + Y+ ++ G+ AE +F ELK+ G+ P + + ++
Sbjct: 171 ASEIFSLM-QHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLL 229
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRR 222
+ + G + E + SG TP ++ AG E L AA+ R
Sbjct: 230 AAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAMER 285
Score = 37.0 bits (84), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 42/86 (48%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
++ ++PD+ Y+ ++ + A E+F ++ G +PD Y ++ Y + G+
Sbjct: 144 QQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLH 203
Query: 180 DKAMETYETMKASGCTPHKLTFTILI 205
+ A +E +K G +P + +L+
Sbjct: 204 EDAEAVFEELKQRGMSPTMKSHMLLL 229
>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
Length = 474
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L + L+ A +F +++ KP+L +Y+ +I L K +I +ELF L EG
Sbjct: 314 LDGLCKHGNLEEAFALFQEMQRST-VKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEG 372
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
L P+ YT ++G + G+I +A + + M+ GCTP K + ++I+
Sbjct: 373 LKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGF 422
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ +I L K+ + A +++K G P+ Y+ +I Y G +D+A
Sbjct: 164 QPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARS 223
Query: 185 TYETMKASGCTPHKLTFTILIRN 207
++ M + GCTP+ T+T L+
Sbjct: 224 VFDLMVSKGCTPNVYTYTSLMNG 246
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
+ ++D A VF+ + + P++ Y+ ++ K ++I A +L E ++GL PD
Sbjct: 215 RGQMDEARSVFDLMVSK-GCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIV 273
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+T +I + G A + + + A G TP+ +T+ +L+ L G E
Sbjct: 274 TFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLE 324
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 8/120 (6%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRK--EVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
++++L++ + NE F+++ +V P++ YS +I Q+ A +F
Sbjct: 173 IINSLSKSGKANE------ALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFD 226
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ +G P+ YT ++ Y ++ I++A++ + G P +TFT +I L AG
Sbjct: 227 LMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAG 286
Score = 37.0 bits (84), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ P++ Y ++ L K+ + A LF E+++ + P+ +YT +I + G I
Sbjct: 303 HTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGK 362
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAG 212
E + + G P+ T+T L+ L G
Sbjct: 363 ELFSRLIDEGLKPNVYTYTALVGALCKEG 391
>gi|357122970|ref|XP_003563186.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Brachypodium distachyon]
Length = 675
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD Y+ MI GK + A + F +++EG++PD + +I + + G D+AME
Sbjct: 408 QPDRHFYNVMIDTFGKYNCLGHAMDAFNRMREEGIEPDVVTWNTLIDAHRKGGRHDRAME 467
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+E M+ S C P T+ I+I L GE+E
Sbjct: 468 LFEEMRESNCPPGTTTYNIMINLL---GEQE 495
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 5/128 (3%)
Query: 103 RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
R+ D A+++F +R E P + Y+ MI +LG+ ++ E + E+K++GL P+
Sbjct: 457 RKGGRHDRAMELFEEMR-ESNCPPGTTTYNIMINLLGEQERWVGVETMLSEMKEQGLVPN 515
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE----LVA 218
YT ++ VY + G +A+E E MKA G P + L+ G + +V
Sbjct: 516 IITYTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPTMYHALVNAYAQRGLADHALNVVK 575
Query: 219 AVRRDCIQ 226
A+R D ++
Sbjct: 576 AMRADGLE 583
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 112 LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ---IAMAEELFCELKKEGLDPDTRVYTE 168
L++ +R E + PDL+ YS ++ L + A+ E L +L++ L+PD ++++
Sbjct: 182 LRLLALIR-EHGFLPDLASYSHLLASLLNTRDPPDAAILERLLGDLRESRLEPDAPLFSD 240
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+I + + + D A++ + +A G TP T LI L AG
Sbjct: 241 LISAFARAALPDAALDLLASAQAIGLTPRSNAVTALISALGGAG 284
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 117 FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176
F+ E+ KP Y+ ++ K + AE++ E+ G+ PD Y+ ++ Y +
Sbjct: 297 FLAGEI--KPRTRAYNALLKGYVKIGSLKNAEQVLDEMSDCGVAPDEATYSLLVDAYTRA 354
Query: 177 GMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLE 236
G + A + M+A G P F+ ++ + G+ + AV R+ P+R
Sbjct: 355 GRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFY 414
Query: 237 EV 238
V
Sbjct: 415 NV 416
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
D AL V +R + + L S ++ G+++++ A + +K+ L PD YT
Sbjct: 568 DHALNVVKAMRADGLEASTVVLNS-LMNAFGEDRRVVEAFSVLQFMKENDLRPDVITYTT 626
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHK 198
++ +++ DK YE M SGC P +
Sbjct: 627 LMKALIRIEQFDKVPVIYEEMITSGCAPDR 656
>gi|297734042|emb|CBI15289.3| unnamed protein product [Vitis vinifera]
Length = 793
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
LD+AL ++ + +E PD YS +I LGK + A +LFCE+ +G P+ Y
Sbjct: 474 LDVALHMYQKM-QEAHLSPDTFTYSVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYN 532
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
MI + + A+E Y M+ +G P K+T++I++ L + G E A+
Sbjct: 533 IMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAI 585
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++PD YS ++ +LG + AE +F E+K++ PD VY ++ ++ +VG ++K+
Sbjct: 559 FQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVDLWGKVGNVEKSW 618
Query: 184 ETYETMKASGCTPHKLTFTILI 205
E Y+ M +G P+ T L+
Sbjct: 619 EWYQAMLNAGLCPNVPTCNSLL 640
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 17/125 (13%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R N L+ A+ VF+ + +E +PD Y +I + K + +A ++ ++++ L PDT
Sbjct: 435 RANYLNEAVSVFDRM-QEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDT 493
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI----------------RN 207
Y+ +I + G + A + + M GC P+ +T+ I+I R+
Sbjct: 494 FTYSVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYRD 553
Query: 208 LENAG 212
++NAG
Sbjct: 554 MQNAG 558
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+L Y+ MI + K + A EL+ +++ G PD Y+ ++ V G +++A
Sbjct: 526 PNLVTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAI 585
Query: 186 YETMKASGCTPHKLTFTILI 205
+ MK P + + +L+
Sbjct: 586 FTEMKRKNWVPDEPVYGLLV 605
>gi|193848521|gb|ACF22711.1| PPR protein [Brachypodium distachyon]
Length = 292
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD Y+ MI GK + A + F +++EG++PD + +I + + G D+AME
Sbjct: 25 QPDRHFYNVMIDTFGKYNCLGHAMDAFNRMREEGIEPDVVTWNTLIDAHRKGGRHDRAME 84
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+E M+ S C P T+ I+I L GE+E
Sbjct: 85 LFEEMRESNCPPGTTTYNIMINLL---GEQE 112
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 5/128 (3%)
Query: 103 RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
R+ D A+++F +R E P + Y+ MI +LG+ ++ E + E+K++GL P+
Sbjct: 74 RKGGRHDRAMELFEEMR-ESNCPPGTTTYNIMINLLGEQERWVGVETMLSEMKEQGLVPN 132
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE----LVA 218
YT ++ VY + G +A+E E MKA G P + L+ G + +V
Sbjct: 133 IITYTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPTMYHALVNAYAQRGLADHALNVVK 192
Query: 219 AVRRDCIQ 226
A+R D ++
Sbjct: 193 AMRADGLE 200
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
D AL V +R + + L S ++ G+++++ A + +K+ L PD YT
Sbjct: 185 DHALNVVKAMRADGLEASTVVLNS-LMNAFGEDRRVVEAFSVLQFMKENDLRPDVITYTT 243
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHK 198
++ +++ DK YE M SGC P +
Sbjct: 244 LMKALIRIEQFDKVPVIYEEMITSGCAPDR 273
>gi|356562783|ref|XP_003549648.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Glycine max]
Length = 859
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 5/138 (3%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
D E ++ + +L++F ++++++W KP+ +Y+ MI +LG+ + E+F E
Sbjct: 102 DFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMITLLGREGLLDKCREVFDE 161
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR-----NL 208
+ G+ VYT +I Y + G ++E MK +P LT+ +I L
Sbjct: 162 MPSNGVARTVYVYTAVINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINACARGGL 221
Query: 209 ENAGEEELVAAVRRDCIQ 226
+ G L A +R + IQ
Sbjct: 222 DWEGLLGLFAEMRHEGIQ 239
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 46/81 (56%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD++ YS ++ GK ++ EL E++ G PD Y ++ Y ++G I +AM+
Sbjct: 275 PDINTYSYLVQTFGKLNRLEKVSELLREMESGGNLPDITSYNVLLEAYAELGSIKEAMDV 334
Query: 186 YETMKASGCTPHKLTFTILIR 206
+ M+A+GC + T+++L+
Sbjct: 335 FRQMQAAGCVANAATYSVLLN 355
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL VFN EV P + Y+ I + AE + + + GL D + +I
Sbjct: 471 ALVVFN-TMNEVGSNPTVETYNSFIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVI 529
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ Q G ++A+++Y M+ + C P++LT +++ +AG
Sbjct: 530 KAFRQGGQYEEAVKSYVEMEKANCEPNELTLEVVLSVYCSAG 571
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 41/88 (46%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y +I GK A+++ + ++G+ P ++ YT +I + Q + ++A+
Sbjct: 414 EPNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAFGQAALYEEALV 473
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ TM G P T+ I G
Sbjct: 474 VFNTMNEVGSNPTVETYNSFIHAFARGG 501
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209
LF E++ EG+ PD Y ++G G+ D+A + TM SG P T++ L++
Sbjct: 229 LFAEMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFG 288
Query: 210 NAGEEELVAAVRRD 223
E V+ + R+
Sbjct: 289 KLNRLEKVSELLRE 302
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 43/81 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
K D+ ++ +I + Q A + + E++K +P+ ++ VY G++D++ E
Sbjct: 519 KRDVHSFNGVIKAFRQGGQYEEAVKSYVEMEKANCEPNELTLEVVLSVYCSAGLVDESEE 578
Query: 185 TYETMKASGCTPHKLTFTILI 205
++ +KASG P + + +++
Sbjct: 579 QFQEIKASGILPSVMCYCLML 599
>gi|302801820|ref|XP_002982666.1| hypothetical protein SELMODRAFT_421954 [Selaginella moellendorffii]
gi|300149765|gb|EFJ16419.1| hypothetical protein SELMODRAFT_421954 [Selaginella moellendorffii]
Length = 796
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L+ E D+A F ++R++ WY P +S ++ G+ K + + +LK +
Sbjct: 109 LKNIQEPDVANGFFQWIRRQKWYVPSTYSFSILLNTYGRGKDFQAVQRVLADLKADKCPM 168
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
T Y +I VY + +D+A Y+ M+ S C P TF L+ AG+ E V V
Sbjct: 169 TTVAYNTLIKVYGKAHKLDEAWGYYKEMQDSRCVPDIFTFNTLMSLYSYAGQSEKVLEV 227
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ L++ K F +R + +P L ++ +I K+ ++ + F +++ P+
Sbjct: 287 KSGRLEIGTKYFEEMR-SLEIRPLLGTFASLIEAYCKSGRLETGLKFFKDMEAFNYKPNL 345
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
+Y ++ + + GM+D A+E YE M+ G L F +LI AG+ E + R+
Sbjct: 346 CIYAALVDAHAKAGMLDAALEFYERMRGVGLWLPPLIFAVLIEQHAQAGKAETAVRLYRE 405
Score = 36.6 bits (83), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 44/91 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ ++ ++ + Q E++ E++K G D Y ++ +VG +D A
Sbjct: 203 PDIFTFNTLMSLYSYAGQSEKVLEVYDEMQKIGCSLDRVGYEVVVPHAGKVGRLDLACML 262
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEEL 216
+E MKA G P+ + ++ LI +G E+
Sbjct: 263 FERMKAEGHQPNAVAYSALIAGQLKSGRLEI 293
>gi|414874000|tpg|DAA52557.1| TPA: hypothetical protein ZEAMMB73_743775 [Zea mays]
Length = 630
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 3/116 (2%)
Query: 98 TLTELRRQNELDLALKVF-NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKK 156
+T + E+D AL V+ V V KP++ LYS MI ++ ++ AE+LF E+
Sbjct: 342 VITGFCKSGEVDRALMVWETMVAARV--KPNVVLYSAMIDGFARSGRMTEAEKLFEEMVD 399
Query: 157 EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
P+ Y+ M+ Y + +A+ T+E M GC P ++++ILI L + G
Sbjct: 400 AKCIPNIVTYSSMVRGYFHIANSSRALSTWEEMIKVGCVPTAISYSILISGLCDVG 455
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 46/87 (52%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P L Y ++ L K ++ A ++ E+ +GL P V++ +I + + G +D+A+
Sbjct: 299 PGLMTYGAVVDGLVKCGRVEDAWKVAQEMGGQGLAPSEFVFSAVITGFCKSGEVDRALMV 358
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ETM A+ P+ + ++ +I +G
Sbjct: 359 WETMVAARVKPNVVLYSAMIDGFARSG 385
>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
Length = 659
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
++ L ++ R +E ALK+ V E +P+L YS +I L K K++ A + +
Sbjct: 512 IIGGLCDVERGDE---ALKMLQ-VMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVM 567
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
++G PD YT +I + ++ +D A + ++TM+ SGC P KL + ILI +G
Sbjct: 568 LEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNV 627
Query: 215 E 215
E
Sbjct: 628 E 628
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L++ L + +R + A+ V + V E PD++ Y+ +I K ++ A + F +
Sbjct: 547 LINGLCKTKRVED---AINVLD-VMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTM 602
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ G +PD Y +I + Q G ++KA+E + M GC P T+ L+R+L
Sbjct: 603 RDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLMRSL 656
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
+LD AL F R ++W P Y +I L + ++I A +L E+ ++ PD V
Sbjct: 73 GDLDRALSHF---RGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAV 129
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y +I ++G ID A + M C P +T+T LI
Sbjct: 130 YNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLI 169
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD + YS M+ L ++ A+E+ + K+G P + Y +IG V D+A++
Sbjct: 469 PDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKM 528
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ M GC P+ T++ILI L
Sbjct: 529 LQVMSERGCEPNLYTYSILINGL 551
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD ++Y+ +I L K +I A + + + PD YT +I Q +D+A +
Sbjct: 125 PDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKL 184
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERF 234
E MK SG TP + + L+ L + E V+ + + ++ P+ F
Sbjct: 185 MEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTF 233
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL Y+ ++ L K ++ A EL + ++ PD Y+ ++ ++G +D A
Sbjct: 335 PDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLL 394
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
E M GC P+ +TF +I AG+
Sbjct: 395 LEMMLERGCQPNLVTFNTMIDGFCKAGK 422
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + Y+ +I + ++A A + ++ K G+ PD Y ++ + G +++A E
Sbjct: 300 PTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHEL 359
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
E M C P +T++IL+ L G+
Sbjct: 360 LEVMVEKDCAPDVVTYSILVNGLCKLGK 387
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 9/115 (7%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ ++D KV + KEV PD+ YS +I K ++ A + G+ PD
Sbjct: 419 KAGKVDEGHKVLELM-KEVSCTPDVVTYSTLIDGYCKANRMQDAFAIL------GISPDK 471
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA--GEEEL 216
Y+ M+ G +++A E + M GC P + ++I L + G+E L
Sbjct: 472 ASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEAL 526
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ N LD A K+ + KE PD Y+ ++ L K Q+ +L E+ + G +PDT
Sbjct: 174 QTNALDEARKLMEKM-KESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDT 232
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y ++ + G ++A + E M C P +T+ L+
Sbjct: 233 FSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLM 274
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 112 LKVFNFVRKEVW--YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
L+ ++F R+ KP S Y +I + M E+ E+ PD + +
Sbjct: 6 LEGYSFFRERFSDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTI 65
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ Y Q+G +D+A+ + C+P T+ ILI L
Sbjct: 66 LKAYCQIGDLDRALSHFR--GKMWCSPTAFTYCILIHGL 102
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L +QN+L+ K+ + E +PD Y+ ++ L ++ + A ++ ++ ++
Sbjct: 204 LNGLCKQNQLEEVSKLLEEMV-EAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKK 262
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
PD Y ++ + +V +D+A E M C P +T+T LI A
Sbjct: 263 CGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRA 315
>gi|302776386|ref|XP_002971363.1| hypothetical protein SELMODRAFT_451140 [Selaginella moellendorffii]
gi|300161345|gb|EFJ27961.1| hypothetical protein SELMODRAFT_451140 [Selaginella moellendorffii]
Length = 745
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 35/158 (22%)
Query: 91 LKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEEL 150
+ D L L ++ AL+ F +V K+ YK D +Y+ MI +LG++ + EEL
Sbjct: 465 FRWDPWKVLRVLMGMRDVTAALRFFYWVEKQPGYKHDSFVYTKMISLLGRHHHFSQVEEL 524
Query: 151 FCELKKEGLD-----------------------------------PDTRVYTEMIGVYLQ 175
+L+ ++ P+TR YT +I + ++
Sbjct: 525 LMKLQSSDIEVSIVTMNSIIFTLSVSHNPDLAMKIFYWMKDLKVKPNTRTYTTVIDMLVK 584
Query: 176 VGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ D+AM Y+ M +GC P T+T+LI++L G+
Sbjct: 585 MRHFDRAMAIYQEMLDAGCKPDAHTYTVLIQSLGREGK 622
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
DLA+K+F ++ K++ KP+ Y+ +I ML K + A ++ E+ G PD YT
Sbjct: 554 DLAMKIFYWM-KDLKVKPNTRTYTTVIDMLVKMRHFDRAMAIYQEMLDAGCKPDAHTYTV 612
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+I + G ID A E M +GC P+ + +T LI +L + G AV
Sbjct: 613 LIQSLGREGKIDAAEHLLEKMPLNGCKPNVVNYTSLINSLIHYGRVSHALAV 664
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 108 LDLALKVFNFVRKEVWY--------KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGL 159
+D+ +K+ +F R Y KPD Y+ +I LG+ +I AE L ++ G
Sbjct: 579 IDMLVKMRHFDRAMAIYQEMLDAGCKPDAHTYTVLIQSLGREGKIDAAEHLLEKMPLNGC 638
Query: 160 DPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
P+ YT +I + G + A+ ++ M+ G P+ +T++++ + L+ A
Sbjct: 639 KPNVVNYTSLINSLIHYGRVSHALAVFKRMQDEGVMPNSITYSLMSKGLKRAN 691
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R +++D A++++N + K V P++ Y+ ++ +L K K+ E+F ++ G P+
Sbjct: 228 RADDIDRAVEMWNQMLK-VGCLPNVVTYTMLMSLLTKLKRFRQVGEIFKDMVSAGCRPNV 286
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
R YT +I G +D A+ +E + + +P TF +L+ + +AG+ EL+ +
Sbjct: 287 RTYTVLIQCLASSGNLDAALLVFEKLDSLKASPTAATFRVLMDSAASAGDLELLKGL 343
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%)
Query: 96 LDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELK 155
L L LR+ E D A F +++ Y+ Y+ +I + G+ K + +++ ++
Sbjct: 149 LVVLQVLRQPLEPDAAWGFFQWLKGVEGYRHTEHTYNSLIEVFGRVKDVTGIQKVLDDMS 208
Query: 156 KEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
G + ++T +I Y + ID+A+E + M GC P+ +T+T+L+ L
Sbjct: 209 AYGCGMNVVLFTTVIHWYSRADDIDRAVEMWNQMLKVGCLPNVVTYTMLMSLLTKLKRFR 268
Query: 216 LVAAVRRDCI 225
V + +D +
Sbjct: 269 QVGEIFKDMV 278
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 48/86 (55%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
++ L++ +I + I A E++ ++ K G P+ YT ++ + ++ + E +
Sbjct: 215 NVVLFTTVIHWYSRADDIDRAVEMWNQMLKVGCLPNVVTYTMLMSLLTKLKRFRQVGEIF 274
Query: 187 ETMKASGCTPHKLTFTILIRNLENAG 212
+ M ++GC P+ T+T+LI+ L ++G
Sbjct: 275 KDMVSAGCRPNVRTYTVLIQCLASSG 300
>gi|168026089|ref|XP_001765565.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683203|gb|EDQ69615.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 505
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 4/135 (2%)
Query: 81 EGFQSRICRLLKADLLD---TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILM 137
E FQ + L AD + + L R +LD A + +E P++ Y+ +I
Sbjct: 328 ELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGALL-LEMEENGCAPNIITYNTLISS 386
Query: 138 LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH 197
GK ++ A LF E+K+ G+ P+ Y+ +I + + G D A+ + MKA GC P+
Sbjct: 387 YGKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAEGCPPN 446
Query: 198 KLTFTILIRNLENAG 212
+T+ +LI L AG
Sbjct: 447 HVTYNLLIDCLIRAG 461
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PD + ++ +I L K Q+ A +F ++ K + PD YT +I +G ID M
Sbjct: 96 FVPDHTTFNILIDSLAKADQVEEACNVFGDMFKLNVSPDVYTYTILIRSLGTIGRIDAVM 155
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAG 212
+ +E+M A GC P+ T+ ++ +AG
Sbjct: 156 KLFESMTAQGCQPNLFTYHSVMHAFGSAG 184
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE P++ YS +I GK + A LF E+K EG P+ Y +I ++ G
Sbjct: 404 KERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNLLIDCLIRAGRF 463
Query: 180 DKAMETYETMKASGCTPHKLTFTILIR 206
AME M+ +GC K+T ++L+R
Sbjct: 464 GAAMEYLREMRDAGCQMGKVTKSLLVR 490
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D+L + ++++ A VF + K + PD+ Y+ +I LG +I +LF +
Sbjct: 106 LIDSLA---KADQVEEACNVFGDMFK-LNVSPDVYTYTILIRSLGTIGRIDAVMKLFESM 161
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
+G P+ Y ++ + G +D+A + ++ M G P +T+ ILI G+
Sbjct: 162 TAQGCQPNLFTYHSVMHAFGSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQL 221
Query: 215 E 215
E
Sbjct: 222 E 222
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
K D L++ +I + G+ + A + KEG P Y+ MI V+++ G + +
Sbjct: 27 KLDTQLFNTLIHIYGEANMMEKALQTLAAFTKEGGRPTAYTYSSMIQVFMKGGDVQNGLL 86
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERF 234
Y+ M + P TF ILI +L A + E V D + P+ +
Sbjct: 87 MYKQMLKAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMFKLNVSPDVY 136
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
K D+ ++++ L K ++ A ELF ++K +GL+ DT Y +I + G +D A
Sbjct: 304 KYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGA 363
Query: 185 TYETMKASGCTPHKLTFTILI 205
M+ +GC P+ +T+ LI
Sbjct: 364 LLLEMEENGCAPNIITYNTLI 384
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 33/142 (23%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
+D +K+F + + +P+L Y ++ G ++ A ++F ++ ++GL PD Y
Sbjct: 151 IDAVMKLFESMTAQ-GCQPNLFTYHSVMHAFGSAGRVDEACDIFQQMVQKGLQPDAVTYN 209
Query: 168 EMIGVYLQVGMIDKA--------------------------------METYETMKASGCT 195
+I + + G +++A ME + MKA G
Sbjct: 210 ILIDAFGKTGQLERAFDFVGKSRSFTNEVTYNSLLSSLGRKGDIQGLMELFGQMKAKGLV 269
Query: 196 PHKLTFTILIRNLENAGEEELV 217
++LT+ ILI L AG E V
Sbjct: 270 SNELTYAILIERLGWAGRVEDV 291
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L+ L R+ ++ +++F ++ + +L+ Y+ +I LG ++ +L+ E+
Sbjct: 244 LSSLGRKGDIQGLMELFGQMKAKGLVSNELT-YAILIERLGWAGRVEDVWQLYLEMVDND 302
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
+ D ++ + G ++ A E ++ MK G +T+ ILI L AG+ +
Sbjct: 303 IKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAG 362
Query: 219 AV 220
A+
Sbjct: 363 AL 364
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 2/128 (1%)
Query: 91 LKADLLDTLTELRRQ-NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEE 149
L L +TL + + N ++ AL+ KE +P YS MI + K +
Sbjct: 28 LDTQLFNTLIHIYGEANMMEKALQTLAAFTKEGG-RPTAYTYSSMIQVFMKGGDVQNGLL 86
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209
++ ++ K PD + +I + +++A + M +P T+TILIR+L
Sbjct: 87 MYKQMLKAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMFKLNVSPDVYTYTILIRSLG 146
Query: 210 NAGEEELV 217
G + V
Sbjct: 147 TIGRIDAV 154
Score = 36.6 bits (83), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 41/80 (51%)
Query: 134 MILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG 193
M+ +LG ++ + L ++K+ DT+++ +I +Y + M++KA++T G
Sbjct: 1 MLTLLGAARRYDDVQRLVESMQKDRTKLDTQLFNTLIHIYGEANMMEKALQTLAAFTKEG 60
Query: 194 CTPHKLTFTILIRNLENAGE 213
P T++ +I+ G+
Sbjct: 61 GRPTAYTYSSMIQVFMKGGD 80
>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 58/109 (53%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
+ ++DLALKVF + K+ KP L Y+ +I I A +L E+ GL+PDT
Sbjct: 92 KGKIDLALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTF 151
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
Y + + G +D+A E T+ + GC P +T+ IL+R L N G+
Sbjct: 152 TYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGK 200
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
+D A +V + K KPD+ Y+ +I K +I A+ + +K++G PD +
Sbjct: 25 NIDKATRVMGILEKH--GKPDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTH 82
Query: 167 TEMIGVYLQVGMIDKAMETY-ETMKASGCTPHKLTFTILIRN--LENAGEEEL 216
MIG + G ID A++ + E +K + C P +T+TILI LE +E L
Sbjct: 83 NIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEAL 135
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 65/164 (39%), Gaps = 39/164 (23%)
Query: 87 ICRLLKADLLD---TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ 143
IC D+++ + L + D A+++F + EV P++S Y+ M+ L +
Sbjct: 282 ICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKL-DEVGCPPNVSSYNTMLSALWSSGD 340
Query: 144 IAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM------------------------- 178
A + ++ +G+DPD Y +I + GM
Sbjct: 341 RYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKT 400
Query: 179 ----------IDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
ID A+E M +GC P++ T+T+LI + +G
Sbjct: 401 VLLGLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIEGIGFSG 444
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 45/91 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ YS +I L ++ +I + L +K++GL PD Y +I + + G +D A+E
Sbjct: 217 EPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIE 276
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ M G P + + ++ L G +
Sbjct: 277 FLDCMICDGFLPDIVNYNTIMAALCKNGNGD 307
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+ +LD+A++ + + + + PD+ Y+ ++ L KN A E+F +L + G P+
Sbjct: 267 REGKLDMAIEFLDCMICD-GFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNV 325
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
Y M+ G +A+ M + G P +T+ LI L G
Sbjct: 326 SSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDG 374
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 43/96 (44%)
Query: 118 VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177
V KE PD Y +I + ++ MA E + +G PD Y ++ + G
Sbjct: 245 VMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNG 304
Query: 178 MIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
D A+E + + GC P+ ++ ++ L ++G+
Sbjct: 305 NGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGD 340
>gi|225456631|ref|XP_002266698.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74750
[Vitis vinifera]
Length = 875
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
LD+AL ++ + +E PD YS +I LGK + A +LFCE+ +G P+ Y
Sbjct: 465 LDVALHMYQKM-QEAHLSPDTFTYSVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYN 523
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
MI + + A+E Y M+ +G P K+T++I++ L + G E A+
Sbjct: 524 IMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAI 576
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++PD YS ++ +LG + AE +F E+K++ PD VY ++ ++ +VG ++K+
Sbjct: 550 FQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVDLWGKVGNVEKSW 609
Query: 184 ETYETMKASGCTPHKLTFTILI 205
E Y+ M +G P+ T L+
Sbjct: 610 EWYQAMLNAGLCPNVPTCNSLL 631
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 17/125 (13%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R N L+ A+ VF+ + +E +PD Y +I + K + +A ++ ++++ L PDT
Sbjct: 426 RANYLNEAVSVFDRM-QEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDT 484
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI----------------RN 207
Y+ +I + G + A + + M GC P+ +T+ I+I R+
Sbjct: 485 FTYSVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYRD 544
Query: 208 LENAG 212
++NAG
Sbjct: 545 MQNAG 549
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+L Y+ MI + K + A EL+ +++ G PD Y+ ++ V G +++A
Sbjct: 517 PNLVTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAI 576
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ MK P + + +L+ G E
Sbjct: 577 FTEMKRKNWVPDEPVYGLLVDLWGKVGNVE 606
>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
chloroplastic-like [Glycine max]
Length = 556
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 10/130 (7%)
Query: 93 ADLLDTLTELRRQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELF 151
+ L+D L + LD A+ +F + +E+ +PD+ Y+ +I L K ++ +A+E+F
Sbjct: 423 SSLIDALC---KNCHLDQAIALFKKMITQEI--QPDMYTYTILIDGLCKGGRLKIAQEVF 477
Query: 152 CELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL--- 208
L +G D R YT MI + + G+ D+A+ M+ +GC P+ +TF I+I L
Sbjct: 478 QHLLIKGYHLDIRTYTVMISGFCKAGLFDEALALLSKMEDNGCIPNAITFDIIICALFEK 537
Query: 209 -ENAGEEELV 217
EN E+L+
Sbjct: 538 DENDKAEKLL 547
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A K+ V + + KPD+ Y+ ++ ++ A+ +F + + G+ P + YT MI
Sbjct: 297 AAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMI 356
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ M+D+A+ +E MK P+ +TF LI L +G
Sbjct: 357 DGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSG 398
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ +Y+ +I L KNK + A L+ E+ + + P+ YT +I + +G + +A+
Sbjct: 206 KPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVA 265
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE---------LVAAVRRDCIQYVEFPERFL 235
MK P TF+ILI L G+ + + A V+ D + Y + +
Sbjct: 266 LLNEMKLKNINPDVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYF 325
Query: 236 EEVYQKHRK 244
KH K
Sbjct: 326 LVNEVKHAK 334
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
PD+ +S +I LGK ++ A+ + + K + PD Y ++ Y V + A
Sbjct: 276 NPDVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKY 335
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
+ +M SG TP ++TI+I L
Sbjct: 336 VFNSMAQSGVTPGVQSYTIMIDGL 359
>gi|147843358|emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera]
Length = 714
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
++D ALK+ F++K P++ YS ++ K ++ A+E+F E+K GL PDT Y
Sbjct: 330 KVDRALKIMEFMKKN-GCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGY 388
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
T +I + + G +D+AME + M + C +TF +++ L G E
Sbjct: 389 TTLINFFCRAGRVDEAMELLKDMXENKCRADTVTFNVILGGLCREGRFE 437
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL-KKEGLDPD 162
+ ++D A +V ++K P+L YS +I L + ++ A ELF E+ K+ + PD
Sbjct: 255 KNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPD 314
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
Y +I + +D+A++ E MK +GC P+ ++ L+ G E
Sbjct: 315 ALTYNALINGFCHGXKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLE 367
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 44/87 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ +I ++ A ++ +KK G +P+ Y+ ++ + + G +++A E
Sbjct: 313 PDALTYNALINGFCHGXKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEV 372
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
++ MK+ G P + +T LI AG
Sbjct: 373 FDEMKSLGLKPDTVGYTTLINFFCRAG 399
>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 712
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++E RQ + AL +F+ + K V +PD+ Y+ +I + K++ +E+LF E G
Sbjct: 481 ISEFCRQTDNKQALAIFSRMFK-VGLQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLG 539
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210
L P YT MI Y + G I A++ + M+ GC P +T+ LI L N
Sbjct: 540 LLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISGLCN 591
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
YKP++ Y+ MI K +++ AE L +K++GL P+T YT +I + + G +A
Sbjct: 365 YKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAY 424
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAG 212
E + M G TP+ T+ +I L G
Sbjct: 425 ELMDLMGKEGFTPNIFTYNAIIDGLCKKG 453
>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
Length = 769
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PD S YS +I L ++ A LF E+K G+ PD YT +I + + G+I++A
Sbjct: 453 FVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQ 512
Query: 184 ETYETMKASGCTPHKLTFTILI 205
+E M++ GC+P +T+T LI
Sbjct: 513 WLFEEMRSVGCSPTVVTYTALI 534
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K V PD+ Y+ +I K I A+ LF E++ G P YT +I YL+ +
Sbjct: 484 KMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQV 543
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+A + + M +GC P+ +T+ L+ L AG
Sbjct: 544 PQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGN 577
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P+ +Y +I K +I A+E+F ++ K G P YT +I + G +D AM+
Sbjct: 645 EPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMK 704
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
M CTP+ +T+T +I L GE E
Sbjct: 705 VLSQMLKDSCTPNVVTYTAMIDGLCRIGESE 735
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ ++D A +VF + K Y P + Y+ +I + K+ ++ +A ++ ++ K+ P+
Sbjct: 660 KAGKIDSAQEVFLQMTK-CGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNV 718
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
YT MI ++G +KA++ M+ GC+P+ +T+T LI L + ++
Sbjct: 719 VTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGQSWQD 769
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 108 LDLALKVFN--FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
LDLA K++ V K +++ ++ + +GK + A +L E+ ++G PDT
Sbjct: 403 LDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDK---AFQLIKEMMRKGFVPDTST 459
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
Y+++I ++KA ++ MK G TP T+TILI + AG
Sbjct: 460 YSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAG 506
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 10/168 (5%)
Query: 58 VLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKAD--LLDTLTELRRQNELDLALKVF 115
VL S+AI+A A K+ L R CR D ++ L +R EL + F
Sbjct: 75 VLISKAIRAFGADFDGKAERVL------RRCRGFLTDSVVVAVLGAVRDAPEL--CARFF 126
Query: 116 NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175
+ ++V Y + Y + LG + + AE L E+ +E + R+ ++ +
Sbjct: 127 LWAERQVGYSHTGACYDALADALGFDGRARDAERLLREIGEEDREVLGRLLNVLVRRCCR 186
Query: 176 VGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
GM ++A+E +K G P K+T+ L++ L +AG+ +L V+++
Sbjct: 187 GGMWNEALEELGRLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKE 234
>gi|115480461|ref|NP_001063824.1| Os09g0542800 [Oryza sativa Japonica Group]
gi|32526676|dbj|BAC79199.1| chloroplast RNA processing 1 -like protein [Oryza sativa Japonica
Group]
gi|113632057|dbj|BAF25738.1| Os09g0542800 [Oryza sativa Japonica Group]
gi|125606498|gb|EAZ45534.1| hypothetical protein OsJ_30195 [Oryza sativa Japonica Group]
gi|215768653|dbj|BAH00882.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 543
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Query: 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
A LL L++ R +E + V + PD+ LY+ ++ ++ ++ AE +F
Sbjct: 219 ASLLGALSKKRLASEAQAMFDSYKSV-----FTPDVVLYTTLVHAWCRSGRLNEAERVFA 273
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
E+++ G+ P+ YT +I + G + +A E M SGC P+ TF ++R AG
Sbjct: 274 EMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFNAIMRAHVKAG 333
Query: 213 EEELVAAV 220
E V V
Sbjct: 334 RSEQVLQV 341
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R L+ A +VF + ++ P++ Y+ +I + + Q+ A+EL C++ G P+T
Sbjct: 261 RSGRLNEAERVFAEM-QQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNT 319
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
+ ++ +++ G ++ ++ + M+ GC P +T+ L+ G+ L AA++
Sbjct: 320 ATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETHCGKGQSNLDAAMK 377
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 64/116 (55%), Gaps = 7/116 (6%)
Query: 112 LKVFNFVRKEVWYKPDLSLYSDMI-LMLGKNK-QIAMAEELFCELKKEGLDPDTRVYTEM 169
L+V N +R ++ +PD+ Y+ ++ GK + + A ++ + +G PD + M
Sbjct: 339 LQVHNQMR-QLGCEPDIITYNFLMETHCGKGQSNLDAAMKMLTRMIAKGCIPDCHTFNPM 397
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR--NLENAGEEELVAAVRRD 223
+ + L +G ++ A + YE M+ C P+ +T+ +L+R NLE + ++V +++D
Sbjct: 398 LKLVLVLGNVNAARKLYERMQELQCKPNVVTYNLLMRLFNLEKS--MDMVLRIKKD 451
>gi|345293243|gb|AEN83113.1| AT5G21222-like protein, partial [Capsella rubella]
gi|345293245|gb|AEN83114.1| AT5G21222-like protein, partial [Capsella rubella]
gi|345293247|gb|AEN83115.1| AT5G21222-like protein, partial [Capsella rubella]
gi|345293249|gb|AEN83116.1| AT5G21222-like protein, partial [Capsella rubella]
gi|345293251|gb|AEN83117.1| AT5G21222-like protein, partial [Capsella rubella]
gi|345293253|gb|AEN83118.1| AT5G21222-like protein, partial [Capsella rubella]
gi|345293255|gb|AEN83119.1| AT5G21222-like protein, partial [Capsella rubella]
gi|345293257|gb|AEN83120.1| AT5G21222-like protein, partial [Capsella rubella]
Length = 160
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP + Y+ ++ L + K L +++K GL PDT ++ +I + G +D+AM+
Sbjct: 1 KPSIITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMK 60
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+E MK SGC P TF LI+ G+ E
Sbjct: 61 IFEKMKESGCKPTTSTFNTLIKGYGKIGKLE 91
>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Brachypodium distachyon]
Length = 628
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
N + AL +F +R + + +PD+ Y+++I LGK + A F E+++EG PDT V
Sbjct: 275 NNVHGALGLFEEMRHQ-YCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVV 333
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
MI + G +D A++ +E M C P +T+ +I+ L
Sbjct: 334 INNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKAL 376
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 6/133 (4%)
Query: 80 EEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
E+GF C L+D L + +R D+A ++F + KE +Y+ MI LG
Sbjct: 430 EKGFPP--CPAAYCSLIDALGKAKR---YDIAHELFQEL-KENCGSSSARVYAVMIKHLG 483
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
K ++ A LF E+ K G P+ Y ++ + GM+D+A+ T M+ GC P
Sbjct: 484 KAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGCIPDIN 543
Query: 200 TFTILIRNLENAG 212
++ I++ L G
Sbjct: 544 SYNIILNGLAKTG 556
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ P + Y +I LGK K+ +A ELF ELK+ RVY MI + G +D A+
Sbjct: 433 FPPCPAAYCSLIDALGKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAV 492
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGE-EELVAAVRR 222
++ M GCTP+ + L+ L AG +E + +RR
Sbjct: 493 NLFDEMNKLGCTPNVYAYNALMSGLARAGMLDEALTTMRR 532
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%)
Query: 113 KVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGV 172
+++N + E PD YS +I K + A L E+K G+ P ++YT +I +
Sbjct: 211 ELYNEMSNEGHCFPDTVTYSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIAL 270
Query: 173 YLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ ++ + A+ +E M+ C P T+T LIR L AG
Sbjct: 271 FFKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAG 310
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+ +L RQ D A+++ N + K+ +P +Y+ +I + K + A LF E+
Sbjct: 232 LISAFCKLGRQ---DSAIRLLNEM-KDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEM 287
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ + PD YTE+I + G D+A + M+ GC P + +I L AG
Sbjct: 288 RHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAG 345
>gi|302798857|ref|XP_002981188.1| hypothetical protein SELMODRAFT_420654 [Selaginella moellendorffii]
gi|300151242|gb|EFJ17889.1| hypothetical protein SELMODRAFT_420654 [Selaginella moellendorffii]
Length = 796
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L+ E D+A F ++R++ WY P +S ++ G+ K + + +LK +
Sbjct: 109 LKNIQEPDVANGFFQWIRRQKWYVPSTYSFSILLNTYGRGKDFQAVQRVLSDLKADKCPM 168
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
T Y +I VY + +D+A Y+ M+ S C P TF L+ AG+ E V V
Sbjct: 169 TTVAYNTLIKVYGKAHKLDEAWGYYKEMQDSRCVPDIFTFNTLMSLYSYAGQSEKVLEV 227
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ L++ K F +R + +P L ++ +I K+ ++ + F +++ P+
Sbjct: 287 KSGRLEIGTKYFEEMRS-LEIRPLLGTFASLIEAYCKSGRLETGLKFFKDMEAFNYKPNL 345
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
+Y ++ + + GM+D A+E YE M+ G L F +LI AG+ E + R+
Sbjct: 346 CIYAALVDAHAKAGMLDAALEFYERMRGVGLWLPPLIFAVLIEQHAQAGKAETAVRLYRE 405
Score = 36.6 bits (83), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 44/91 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ ++ ++ + Q E++ E++K G D Y ++ +VG +D A
Sbjct: 203 PDIFTFNTLMSLYSYAGQSEKVLEVYDEMQKIGCSLDRVGYEVVVPHAGKVGRLDLACML 262
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEEL 216
+E MKA G P+ + ++ LI +G E+
Sbjct: 263 FERMKAEGHQPNAVAYSALIAGQLKSGRLEI 293
>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06710, mitochondrial; Flags: Precursor
gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
Length = 987
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 113 KVFNFVRKEVW--YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
K F+ +R+ + + PD S YS ++ L ++ +A LF E+K+ GL D YT M+
Sbjct: 466 KAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMV 525
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
+ + G+I++A + + M+ GCTP+ +T+T LI
Sbjct: 526 DSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIH 561
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
L L ++++LA +F +++ D+ Y+ M+ K I A + F E+++
Sbjct: 489 VLNYLCNASKMELAFLLFEEMKRG-GLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREV 547
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
G P+ YT +I YL+ + A E +ETM + GC P+ +T++ LI AG+ E
Sbjct: 548 GCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVE 605
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 20/167 (11%)
Query: 80 EEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
E GF + + + L+D +++RQ DLA KV + + + P++ +Y++MI L
Sbjct: 702 EHGFPATL--YTYSSLIDRYFKVKRQ---DLASKVLSKMLENSC-APNVVIYTEMIDGLC 755
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
K + A +L ++++G P+ YT MI + +G I+ +E E M + G P+ +
Sbjct: 756 KVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYV 815
Query: 200 TFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVYQKHRKTQ 246
T+ +LI + G ++ LEE+ Q H T
Sbjct: 816 TYRVLIDHCCKNGA--------------LDVAHNLLEEMKQTHWPTH 848
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A K FN +R EV P++ Y+ +I K K+++ A ELF + EG P+ Y+ +I
Sbjct: 537 ARKWFNEMR-EVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALI 595
Query: 171 GVYLQVGMIDKAMETYETMKASGCTP 196
+ + G ++KA + +E M S P
Sbjct: 596 DGHCKAGQVEKACQIFERMCGSKDVP 621
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 18/117 (15%)
Query: 90 LLKADLLDTLTELRRQNELDLA-LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAE 148
LKAD LD+ + + R E+ LA L++ F + Y + +GK +
Sbjct: 245 FLKADRLDSASLIHR--EMSLANLRMDGFTLRCFAYS---------LCKVGKWR------ 287
Query: 149 ELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
E ++ E PDT YT++I + + ++AM+ M+A+ C P+ +T++ L+
Sbjct: 288 EALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLL 344
>gi|356516744|ref|XP_003527053.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Glycine max]
Length = 882
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 4/132 (3%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
LD+A+ ++ + +EV PD YS MI LGK+ ++ A LFCE+ +G P+ Y
Sbjct: 472 LDVAMSMYERM-QEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYN 530
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227
+I + + A++ Y M+ +G P K+T++I++ L G E AV + Q
Sbjct: 531 ILIALQAKARNYQTALKLYRDMQNAGFKPDKVTYSIVMEVLGYCGYLEEAEAVFFEMKQN 590
Query: 228 VEFPERFLEEVY 239
P+ E VY
Sbjct: 591 NWVPD---EPVY 599
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ +I G+ + A +F ++++ G +PD Y +I ++ + G +D AM
Sbjct: 418 QPNVVTYNRLIHSYGRANYLGEALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMS 477
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDC 224
YE M+ G +P T++++I L +G L AA R C
Sbjct: 478 MYERMQEVGLSPDTFTYSVMINCLGKSG--NLSAAHRLFC 515
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 57/111 (51%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L++ + +AL F +++++ + D Y+ M+ +LG+ ++ +L ++ K+G P
Sbjct: 360 LKQLQDHSVALSFFYWLKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQP 419
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ Y +I Y + + +A+ + M+ GC P ++T+ LI AG
Sbjct: 420 NVVTYNRLIHSYGRANYLGEALNVFNQMQEMGCEPDRVTYCTLIDIHAKAG 470
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R N L AL VFN + +E+ +PD Y +I + K + +A ++ +++ GL PDT
Sbjct: 433 RANYLGEALNVFNQM-QEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDT 491
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y+ MI + G + A + M GC P+ +T+ ILI
Sbjct: 492 FTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILI 533
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+KPD YS ++ +LG + AE +F E+K+ PD VY +I ++ + G ++KA
Sbjct: 557 FKPDKVTYSIVMEVLGYCGYLEEAEAVFFEMKQNNWVPDEPVYGLLIDLWGKAGNVEKAW 616
Query: 184 ETYETMKASGCTPHKLTFTILI 205
E Y M +G P+ T L+
Sbjct: 617 EWYHAMLRAGLLPNVPTCNSLL 638
>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
lyrata]
gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
lyrata]
Length = 988
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 113 KVFNFVRKEVW--YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
K F+ +R+ + + PD S YS ++ L ++ +A LF E+K+ GL D YT M+
Sbjct: 466 KAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMV 525
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
+ + G+I++A + + M+ GCTP+ +T+T LI
Sbjct: 526 DSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIH 561
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ Y+ M+ K I A + F E+++ G P+ YT +I YL+ + A E +
Sbjct: 517 DVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELF 576
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEE 215
ETM + GC P+ +T++ LI AG+ E
Sbjct: 577 ETMLSEGCLPNIVTYSALIDGHCKAGQME 605
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 20/167 (11%)
Query: 80 EEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
E GF + + + L+D +++RQ DLA KV + + + P++ +Y++MI L
Sbjct: 703 EHGFPATL--YTYSSLIDRYFKVKRQ---DLASKVLSKMLENSC-APNVVIYTEMIDGLC 756
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
K + A +L ++++G P+ YT MI + ++G I+ +E E M + G P+ +
Sbjct: 757 KVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYV 816
Query: 200 TFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVYQKHRKTQ 246
T+ +LI + G ++ LEE+ Q H T
Sbjct: 817 TYRVLIDHCCKNGA--------------LDVAHNLLEEMKQTHWPTH 849
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A K FN +R EV P++ Y+ +I K K+++ A ELF + EG P+ Y+ +I
Sbjct: 537 ARKWFNEMR-EVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALI 595
Query: 171 GVYLQVGMIDKAMETYETMKASGCTP 196
+ + G ++KA + +E M S P
Sbjct: 596 DGHCKAGQMEKACQIFERMCGSKDVP 621
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 18/117 (15%)
Query: 90 LLKADLLDTLTELRRQNELDLA-LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAE 148
LKAD LD+ + + R E+ LA L++ F L Y+ + +GK +
Sbjct: 245 FLKADCLDSASLVHR--EMSLANLRMDGFT---------LRCYAYSLCKVGKWR------ 287
Query: 149 ELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
E ++ E PDT YT++I + + ++AM+ M+A+ C P+ +T++ L+
Sbjct: 288 EALTLMETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLL 344
>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 997
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 113 KVFNFVRKEVW--YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
K F+ +R+ + + PD S YS ++ L ++ +A LF E+K+ GL D YT M+
Sbjct: 466 KAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMV 525
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
+ + G+I++A + + M+ GCTP+ +T+T LI
Sbjct: 526 DSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIH 561
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ Y+ M+ K I A + F E+++ G P+ YT +I YL+ + A E +
Sbjct: 517 DVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELF 576
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEE 215
ETM + GC P+ +T++ LI AG+ E
Sbjct: 577 ETMLSEGCLPNIVTYSALIDGHCKAGQVE 605
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 20/167 (11%)
Query: 80 EEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
E GF + + + L+D +++RQ DLA KV + + + P++ +Y++MI L
Sbjct: 702 EHGFPATL--YTYSSLIDRYFKVKRQ---DLASKVLSKMLENSC-APNVVIYTEMIDGLC 755
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
K + A +L ++++G P+ YT MI + +G I+ +E E M + G P+ +
Sbjct: 756 KVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYV 815
Query: 200 TFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVYQKHRKTQ 246
T+ +LI + G ++ LEE+ Q H T
Sbjct: 816 TYRVLIDHCCKNGA--------------LDVAHNLLEEMKQTHWPTH 848
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A K FN +R EV P++ Y+ +I K K+++ A ELF + EG P+ Y+ +I
Sbjct: 537 ARKWFNEMR-EVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALI 595
Query: 171 GVYLQVGMIDKAMETYETMKASGCTP 196
+ + G ++KA + +E M S P
Sbjct: 596 DGHCKAGQVEKACQIFERMCGSKDVP 621
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 18/117 (15%)
Query: 90 LLKADLLDTLTELRRQNELDLA-LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAE 148
LKAD LD+ + + R E+ LA L++ F L ++ + +GK +
Sbjct: 245 FLKADRLDSASLIHR--EMSLANLRMDGFT---------LRCFAYSLCKVGKWR------ 287
Query: 149 ELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
E ++ E PDT YT++I + + ++AM+ M+A+ C P+ +T++ L+
Sbjct: 288 EALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLL 344
>gi|449469499|ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Cucumis sativus]
gi|449487784|ref|XP_004157799.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Cucumis sativus]
Length = 502
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
E+ A KVFN + E P + Y+ MI +L K + A +F E+ K+G P+
Sbjct: 301 GEIKRARKVFNEMVGE-GILPSTATYNAMIQVLCKKDSVENAVLMFEEMVKKGYVPNLTT 359
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
Y +I G +DKAME E MK GC P+ T+ + IR +AG+ E
Sbjct: 360 YNVVIRGLFHAGNMDKAMEFIERMKTDGCEPNVQTYNVAIRYFCDAGDVE 409
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ Y+ M+ G +I A ++F E+ EG+ P T Y MI V + ++ A+ +
Sbjct: 286 DVVTYTTMVHGFGVVGEIKRARKVFNEMVGEGILPSTATYNAMIQVLCKKDSVENAVLMF 345
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGE 213
E M G P+ T+ ++IR L +AG
Sbjct: 346 EEMVKKGYVPNLTTYNVVIRGLFHAGN 372
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P ++ Y+ ++ + Q+ A E F ++K+ ++ D YT M+ + VG I +A +
Sbjct: 250 PTITTYNILLKGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKV 309
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ M G P T+ +I+ L
Sbjct: 310 FNEMVGEGILPSTATYNAMIQVL 332
>gi|227463004|gb|ACP39954.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463006|gb|ACP39955.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 547
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 14/140 (10%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LLDTL + R ++ A KVF+ ++K + PD+ Y+ ++ GK + +E++ E+
Sbjct: 232 LLDTLCKSR---HVEKANKVFDKMKKRR-FVPDIKSYTILLEGWGKEHNLLRLDEVYLEM 287
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
K +G +PD Y +I Y + D A+E + M+A C P + LI L G E
Sbjct: 288 KYDGFEPDVVTYGILISAYCKAKKYDAAIELFHEMEAKNCKPTPHVYCTLINGL---GSE 344
Query: 215 ELVAAVRRDCIQYVEFPERF 234
+ ++ + +EF ERF
Sbjct: 345 KRLS-------EALEFFERF 357
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP +Y +I LG K+++ A E F K G P+ Y ++G Y ID A +
Sbjct: 328 KPTPHVYCTLINGLGSEKRLSEALEFFERFKSCGFTPEAPTYNSLVGAYCWSMRIDDAFQ 387
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
+ M+ P+ T+ I++ +L
Sbjct: 388 VIDEMRKHSAGPNSRTYDIILHHL 411
>gi|449437410|ref|XP_004136485.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Cucumis sativus]
gi|449519964|ref|XP_004167004.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Cucumis sativus]
Length = 534
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 14/167 (8%)
Query: 55 RSRVLSSEAIQAVHAMKLAKSSSKLEE-GFQSRICRLLKADLLDTLTELRRQNELDLALK 113
R V + A +AVHA +++E+ G + I ++++ L + RR E A
Sbjct: 191 RRYVRAGLAAEAVHAF------NRMEDYGCNADIIAF--SNVISILCKKRRAVE---AQS 239
Query: 114 VFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY 173
F+ ++ + ++PD+ +Y+ ++ + I+ AE +F E+K G+ P+ Y+ +I
Sbjct: 240 FFDNLKHK--FEPDVIVYTSLVHGWCRAGDISEAESVFREMKMAGISPNVYTYSIVIDAL 297
Query: 174 LQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+ G I +A + + M +GC P+ +TF LIR AG E V V
Sbjct: 298 CRSGQITRAHDVFAEMLDAGCNPNSVTFNNLIRVHLRAGRTEKVLQV 344
Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 46/95 (48%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL FN+ ++ Y++MI + GK KQ +A L +K ++ ++ ++
Sbjct: 131 ALAFFNWATAGEGFEHSPQPYNEMIDLAGKVKQFGLAWYLIDLMKARNVEITVVTFSMLV 190
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y++ G+ +A+ + M+ GC + F+ +I
Sbjct: 191 RRYVRAGLAAEAVHAFNRMEDYGCNADIIAFSNVI 225
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 117 FVR-KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175
F R KEV KP+ Y+ ++ M K M +L E+ +E ++P+ Y E+I +Y
Sbjct: 415 FARMKEVGCKPNTVTYNILMRMFAVPKSADMIFKLKKEMDEEEVEPNFNTYRELIALYCG 474
Query: 176 VGMIDKAMETYETMKASGCT-PHKLTFTILIRNLENAGE----EELV 217
+G + A + M C P + +++ L AG+ EELV
Sbjct: 475 MGHWNHAYMFFREMIDEKCIKPSMPLYKMVLEELRKAGQLKKHEELV 521
>gi|125580966|gb|EAZ21897.1| hypothetical protein OsJ_05550 [Oryza sativa Japonica Group]
Length = 595
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
++KVFN + K + KP++ Y+ ++ + AEE+F E+++ G +PD Y ++
Sbjct: 299 SMKVFNEM-KSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALM 357
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
Y + G+ A E + M+ GC P + ++ IL+ AG E AV
Sbjct: 358 EAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAV 407
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 61/147 (41%), Gaps = 35/147 (23%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELF-- 151
DL++ + R + DL + V ++ ++PD+ Y+ +I GK +Q+ AE ++
Sbjct: 141 DLVNVAVQFRMNKKWDLIIPVCEWILYRSSFRPDIICYNLLIESYGKKRQLNKAESIYMA 200
Query: 152 ---------------------------------CELKKEGLDPDTRVYTEMIGVYLQVGM 178
E+++ G+ P+ VY + L+
Sbjct: 201 LLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARC 260
Query: 179 IDKAMETYETMKASGCTPHKLTFTILI 205
+KA+E Y+ MK C + TFT++I
Sbjct: 261 TEKAVEVYQRMKRERCRANTETFTLMI 287
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A++V+ +++E + + ++ MI + GK KQ + ++F E+K G P+ YT ++
Sbjct: 264 AVEVYQRMKRERC-RANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALV 322
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ + G+ +KA E +E M+ +G P + L+ AG
Sbjct: 323 NAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAG 364
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+ ++Y+ + L K + A E++ +K+E +T +T MI VY + +M+
Sbjct: 243 PNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKV 302
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ MK+ GC P+ T+T L+ G
Sbjct: 303 FNEMKSIGCKPNICTYTALVNAFAREG 329
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD + Y+ ++ G+ AE +F ELK+ G+ P + + ++ + + G + E
Sbjct: 382 EPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEE 441
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRR 222
+ SG TP ++ AG E L AA+ R
Sbjct: 442 VMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAMER 483
>gi|125564557|gb|EAZ09937.1| hypothetical protein OsI_32236 [Oryza sativa Indica Group]
Length = 544
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Query: 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
A LL L++ R +E + V + PD+ LY+ ++ ++ ++ AE +F
Sbjct: 220 ASLLGALSKKRLASEAQAMFDSYKSV-----FTPDVVLYTTLVHAWCRSGRLDEAERVFA 274
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
E+++ G+ P+ YT +I + G + +A E M SGC P+ TF ++R AG
Sbjct: 275 EMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFNAIMRAHVKAG 334
Query: 213 EEELVAAV 220
E V V
Sbjct: 335 RSEQVLQV 342
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R LD A +VF + ++ P++ Y+ +I + + Q+ A+EL C++ G P+T
Sbjct: 262 RSGRLDEAERVFAEM-QQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNT 320
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
+ ++ +++ G ++ ++ + M+ GC P +T+ L+ G+ L AA++
Sbjct: 321 ATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETHCGKGQSNLDAAMK 378
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 64/116 (55%), Gaps = 7/116 (6%)
Query: 112 LKVFNFVRKEVWYKPDLSLYSDMI-LMLGKNK-QIAMAEELFCELKKEGLDPDTRVYTEM 169
L+V N +R ++ +PD+ Y+ ++ GK + + A ++ + +G PD + M
Sbjct: 340 LQVHNQMR-QLGCEPDIITYNFLMETHCGKGQSNLDAAMKMLTRMIAKGCIPDCHTFNPM 398
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR--NLENAGEEELVAAVRRD 223
+ + L +G ++ A + YE M+ C P+ +T+ +L+R NLE + ++V ++RD
Sbjct: 399 LKLVLVLGNVNAARKLYERMQELQCKPNVVTYNLLMRLFNLEKS--MDMVLRIKRD 452
>gi|255582955|ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528066|gb|EEF30142.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 521
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
D A K+ F+R P++ YS ++ K ++ A+E+F E+K GL PDT YT
Sbjct: 288 DRARKIMEFMRSN-GCDPNVFNYSVLMNGFCKEGRLEEAKEVFDEMKSSGLKPDTVGYTT 346
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+I + VG ID+AME + M C +TF +L++ L G
Sbjct: 347 LINCFCGVGRIDEAMELLKEMTEMKCKADAVTFNVLLKGLCREG 390
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 60/113 (53%), Gaps = 1/113 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL-KKEGLDPD 162
+ +L+ AL+V + ++K P++ YS +I L N ++ A ELF E+ K+ + PD
Sbjct: 211 KSGDLESALEVMHEMKKSRRSYPNVITYSTLIDGLCGNGRLKEAIELFEEMVSKDQILPD 270
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
Y+ +I + G D+A + E M+++GC P+ +++L+ G E
Sbjct: 271 ALTYSVLIKGFCHGGKADRARKIMEFMRSNGCDPNVFNYSVLMNGFCKEGRLE 323
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD YS +I + A ++ ++ G DP+ Y+ ++ + + G +++A E
Sbjct: 269 PDALTYSVLIKGFCHGGKADRARKIMEFMRSNGCDPNVFNYSVLMNGFCKEGRLEEAKEV 328
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
++ MK+SG P + +T LI G
Sbjct: 329 FDEMKSSGLKPDTVGYTTLINCFCGVG 355
Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 63/127 (49%), Gaps = 2/127 (1%)
Query: 88 CRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMA 147
C+ + L+ + + + + L++F ++ V KP L S + +L ++KQI +A
Sbjct: 123 CKFHENIFLNLMKHFYKSSLHERVLEMFYAIQPIVREKPSLKAISTCLNILVESKQIDLA 182
Query: 148 EELFCELKKE-GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS-GCTPHKLTFTILI 205
++ + + + P+T ++ ++ + + G ++ A+E MK S P+ +T++ LI
Sbjct: 183 QKCLLYVNEHLKVRPNTCIFNILVKHHCKSGDLESALEVMHEMKKSRRSYPNVITYSTLI 242
Query: 206 RNLENAG 212
L G
Sbjct: 243 DGLCGNG 249
>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
Length = 946
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 113 KVFNFVRKEVW--YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
K F+ +R+ + + PD S YS ++ L ++ +A LF E+K+ GL D YT M+
Sbjct: 425 KAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMV 484
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
+ + G+I++A + + M+ GCTP+ +T+T LI
Sbjct: 485 DSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIH 520
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
L L ++++LA +F +++ D+ Y+ M+ K I A + F E+++
Sbjct: 448 VLNYLCNASKMELAFLLFEEMKRG-GLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREV 506
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
G P+ YT +I YL+ + A E +ETM + GC P+ +T++ LI AG+ E
Sbjct: 507 GCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVE 564
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 20/167 (11%)
Query: 80 EEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
E GF + + + L+D +++RQ DLA KV + + + P++ +Y++MI L
Sbjct: 661 EHGFPATL--YTYSSLIDRYFKVKRQ---DLASKVLSKMLENSC-APNVVIYTEMIDGLC 714
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
K + A +L ++++G P+ YT MI + +G I+ +E E M + G P+ +
Sbjct: 715 KVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYV 774
Query: 200 TFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVYQKHRKTQ 246
T+ +LI + G ++ LEE+ Q H T
Sbjct: 775 TYRVLIDHCCKNGA--------------LDVAHNLLEEMKQTHWPTH 807
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A K FN +R EV P++ Y+ +I K K+++ A ELF + EG P+ Y+ +I
Sbjct: 496 ARKWFNEMR-EVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALI 554
Query: 171 GVYLQVGMIDKAMETYETMKASGCTP 196
+ + G ++KA + +E M S P
Sbjct: 555 DGHCKAGQVEKACQIFERMCGSKDVP 580
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 18/117 (15%)
Query: 90 LLKADLLDTLTELRRQNELDLA-LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAE 148
LKAD LD+ + + R E+ LA L++ F + Y + +GK +
Sbjct: 204 FLKADRLDSASLIHR--EMSLANLRMDGFTLRCFAYS---------LCKVGKWR------ 246
Query: 149 ELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
E ++ E PDT YT++I + + ++AM+ M+A+ C P+ +T++ L+
Sbjct: 247 EALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLL 303
>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 901
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+ LD AL + + ++ + D+ LY+ I GK ++ MA + F E+K GL PD
Sbjct: 245 REGRLDAALSLLDEMKSNCLH-ADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDD 303
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
YT MIGV + +D+A+E +E M+ + P + +I +AG+
Sbjct: 304 VTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGK 353
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
LT L ++ L AL+ F ++K+ P+LS Y+ +I ML K ++ A ++ +K+ G
Sbjct: 380 LTCLGKKGRLGEALRTFEEMKKDA--APNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAG 437
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
L P+ MI + +D+A +E M C+P ++TF LI L G
Sbjct: 438 LFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQG 491
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LLD L + NE AL F + K + P+ YS +I L + ++ A + E+
Sbjct: 728 LLDALVKAEEINE---ALVCFQNM-KNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEM 783
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+K+GL P+T YT MI + G I +A +E KA+G P ++ +I L
Sbjct: 784 QKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGL 837
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P + Y +I L K ++ A LF E K GL+ + +Y+ +I + +VG ID+A
Sbjct: 649 QPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYL 708
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
E + G TP+ T+ L+ L A E
Sbjct: 709 IMEELMQKGLTPNVYTWNCLLDALVKAEE 737
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 46/82 (56%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
++ +YS +I GK +I A + EL ++GL P+ + ++ ++ I++A+ +
Sbjct: 686 NVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCF 745
Query: 187 ETMKASGCTPHKLTFTILIRNL 208
+ MK TP+ +T++ILI L
Sbjct: 746 QNMKNLKGTPNHITYSILINGL 767
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PD+ YS +I L K ELF +K++G DT Y I + + G ++KA
Sbjct: 578 FIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAY 637
Query: 184 ETYETMKASGCTPHKLTFTILIRNL 208
+ E MK G P +T+ +I L
Sbjct: 638 QLLEEMKTKGRQPTVVTYGSVIDGL 662
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 61/163 (37%), Gaps = 35/163 (21%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ ++D+A K F+ ++ PD Y+ MI +L K ++ A E+F ++++ P
Sbjct: 280 KAGKVDMAWKFFHEIKSHGLL-PDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCA 338
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL------------------------ 199
Y MI Y G D+A E KA GC P +
Sbjct: 339 YAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEE 398
Query: 200 ----------TFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
T+ +LI L AGE E VR + FP
Sbjct: 399 MKKDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPN 441
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + Y+ ++ LGK ++ A F E+KK+ P+ Y +I + + G ++ A +
Sbjct: 371 PSVIAYNCILTCLGKKGRLGEALRTFEEMKKDAA-PNLSTYNVLIDMLCKAGEVEAAFKV 429
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ MK +G P+ +T I+I L
Sbjct: 430 RDAMKEAGLFPNVMTVNIMIDRL 452
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 42/207 (20%), Positives = 83/207 (40%), Gaps = 10/207 (4%)
Query: 15 FHFSQMGFHQRPQISLPSGKKIQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAK 74
F F + + R IS+ +G DA+ W + E + V + +
Sbjct: 17 FRFWNIYTNSRKWISIYTGLSSGLDGQVTSFMDADNHENWTKSGTAKEVVDDVCKILESG 76
Query: 75 SSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSL---- 130
+ E S K DL+ + LRR +++ A+ F + + K D +L
Sbjct: 77 NWGPDVENALSLFVESPKTDLV--IGVLRRAKDVNQAISYFRWTER----KTDQALCPEA 130
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y ++L++ KN + E++ E+ G P T+ E+I ++ + + + + M+
Sbjct: 131 YDSLLLVMAKNVKFDYFEQILGEMSIAGFGPSTKTCIELILSCIKSNKLREGFDLIQCMR 190
Query: 191 ASGCTPHKLTFTILIRNLENAGEEELV 217
P +T LI L + E +++
Sbjct: 191 KFKFRPAFSAYTTLIGALSSVQESDIM 217
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + E++ A KV + KE P++ + MI L K K++ A +F + + P
Sbjct: 417 LCKAGEVEAAFKVRD-AMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSP 475
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
D + +I + G +D A YE M S P+ + +T LI++ G +E
Sbjct: 476 DEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKE 529
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L + +LD A +F + ++ PD + +I LGK ++ A L+ ++
Sbjct: 449 IDRLCKAKKLDEACSIFEGMNHKIC-SPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSD 507
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP 196
P+ VYT +I + + G + + ++ M GC+P
Sbjct: 508 KIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSP 545
>gi|326524964|dbj|BAK04418.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 565
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 6/128 (4%)
Query: 91 LKADLLD---TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMA 147
LKADL D + L + ++ A +F +++ + PDL Y+ ++ G K + M
Sbjct: 244 LKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRNGRFVPDLKTYTVLMEGWGHEKDLLML 303
Query: 148 EELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN 207
+ ++ E+ GL PD Y +I + + G D+A++ + M+ +GC P + +LI
Sbjct: 304 KSVYQEMLDAGLQPDVVAYGMLISSFCKSGKCDEAIKVFREMETNGCMPSPHVYCMLING 363
Query: 208 LENAGEEE 215
L G EE
Sbjct: 364 L---GSEE 368
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R ++ A K+ + +RK P+ Y ++ L K+++I A +F + K+G +P
Sbjct: 401 RSSKFQHAFKMVDEMRKS-GIGPNSRTYDIILHHLIKSQKIEEAYNVFQGMSKDGCEPQL 459
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL--ENAGEE 214
YT M+G++ +D A++ + MK G P F+ LI L EN EE
Sbjct: 460 NTYTMMVGMFCSNERVDVALKVWNQMKEKGVLPCMHMFSALINGLCFENRLEE 512
>gi|297842227|ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
lyrata]
gi|297334836|gb|EFH65254.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
lyrata]
Length = 863
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL+ YS ++ GK +++ +L E+ G PD Y ++ Y + G I +AM
Sbjct: 280 PDLTTYSHLVETFGKLRRLEKVSDLLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGV 339
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ M+A+GCTP+ T+++L+ +G
Sbjct: 340 FHQMQAAGCTPNANTYSVLLNLFGQSG 366
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 67/138 (48%), Gaps = 5/138 (3%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
D E + + +L++F ++++++W KP+ +Y+ MI +LG+ + E+F E
Sbjct: 107 DFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDE 166
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ +G+ YT +I Y + G + ++E + MK +P LT+ +I G
Sbjct: 167 MPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNDKISPSILTYNTVINACARGGL 226
Query: 214 E-----ELVAAVRRDCIQ 226
+ L A +R + IQ
Sbjct: 227 DWEGLLGLFAEMRHEGIQ 244
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 48/101 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD++ Y+ ++ K+ I A +F +++ G P+ Y+ ++ ++ Q G D +
Sbjct: 315 PDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQL 374
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
+ MK+S P T+ ILI G + V + D ++
Sbjct: 375 FLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVE 415
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 39/88 (44%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ Y +I GK A ++ + + P ++ YT +I + Q + ++A+
Sbjct: 419 EPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALV 478
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ TM G P T+ L+ + G
Sbjct: 479 AFNTMHEVGSNPSIETYHSLLYSFARGG 506
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL FN + EV P + Y ++ + + +E + L G+ + + I
Sbjct: 476 ALVAFNTMH-EVGSNPSIETYHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQI 534
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y Q G ++A++TY M+ S C P + T ++
Sbjct: 535 EAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVL 569
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
LF E++ EG+ PD Y ++ G+ D+A + TM G P T++ L+
Sbjct: 234 LFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLV 289
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 37/80 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+ + YS ++ + G++ + +LF E+K DPD Y +I V+ + G + +
Sbjct: 350 PNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTL 409
Query: 186 YETMKASGCTPHKLTFTILI 205
+ M P T+ +I
Sbjct: 410 FHDMVEENIEPDMETYEGII 429
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD + Y+ +I + G+ LF ++ +E ++PD Y +I + G+ + A +
Sbjct: 385 PDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKI 444
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG--EEELVA 218
+ M A+ P +T +I A EE LVA
Sbjct: 445 LQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVA 479
>gi|218197756|gb|EEC80183.1| hypothetical protein OsI_22045 [Oryza sativa Indica Group]
Length = 577
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E ++PD Y+ ++ K + E + EL K G D Y MI +Y ++G +D
Sbjct: 129 EKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLD 188
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNL 208
A+ Y+ M+A GCTP +T+T+L+ +L
Sbjct: 189 LALGLYDEMRAIGCTPDAVTYTVLVDSL 216
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 1/135 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ LDLAL +++ +R + PD Y+ ++ LGK +I+ A ++ E+ GL P
Sbjct: 183 KMGRLDLALGLYDEMRA-IGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTL 241
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
++ +I Y + G D A T++ M SG P +L + +++ + E + + R
Sbjct: 242 VTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRA 301
Query: 224 CIQYVEFPERFLEEV 238
I+ P+ L +V
Sbjct: 302 MIKDGYKPDDGLYQV 316
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIA--MAEELFCELKKEGLDP 161
R D A ++ + +R + +PDL ++ +I K+ +A +A EL E+++ GL P
Sbjct: 6 RSGRFDDARQLLDAMRDQD-IEPDLVSFNTLINARAKSGCLAAGVALELLHEVRQAGLRP 64
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
D Y +I Q +D A+ +E M AS C P T+ ++
Sbjct: 65 DAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMV 108
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++ D Y+ MI M GK ++ +A L+ E++ G PD YT ++ ++ I +A
Sbjct: 167 FRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAG 226
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ E M +G P +TF+ LI +G ++
Sbjct: 227 KVLEEMADAGLKPTLVTFSALICAYAKSGRQD 258
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 4/129 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D+L ++ R +E A KV + + KP L +S +I K+ + AE F +
Sbjct: 212 LVDSLGKMDRISE---AGKVLEEM-ADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRM 267
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
+ G+ PD Y M+ V+ + K M Y M G P + +L+ L E
Sbjct: 268 VESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEH 327
Query: 215 ELVAAVRRD 223
+ + V +D
Sbjct: 328 DEIEGVIQD 336
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 10/127 (7%)
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
+AL++ + VR + +PD Y+ +I + + A +F E+ PD Y M
Sbjct: 49 VALELLHEVR-QAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAM 107
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE--------EELV-AAV 220
+ V+ + G +A ++ + G P +T+ L+ G+ EELV A
Sbjct: 108 VSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGF 167
Query: 221 RRDCIQY 227
R+D I Y
Sbjct: 168 RKDGITY 174
>gi|302761046|ref|XP_002963945.1| hypothetical protein SELMODRAFT_82351 [Selaginella moellendorffii]
gi|300167674|gb|EFJ34278.1| hypothetical protein SELMODRAFT_82351 [Selaginella moellendorffii]
Length = 376
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 5/114 (4%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ L + +LD A KVF +E+ P+L ++ + L + K I+ A +++ +L+K+G
Sbjct: 246 ISTLSKHGKLDDARKVF----RELA-SPELVHFNSFMSALCQRKLISEAFQVYEQLQKKG 300
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
L PDT YT +IG VG D+A+ +TM + C P +T+ IL L AG
Sbjct: 301 LVPDTYTYTILIGGLCDVGRTDQALSLKDTMIQNNCKPDSVTYGILRAGLLKAG 354
Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L + +E AL V + + + P + +Y+ +I L K ++ A EL +
Sbjct: 70 LVDGFLRLSKFSE---ALAVLDVMAERGCIPPAI-VYNQLIDGLCKAGKVEEAFELSTTM 125
Query: 155 KKEGLDPDTRVYTEMI-GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
K G P Y +I G+ LQ G D+A + + M SG P +T+T+LI +L G
Sbjct: 126 VKNGCSPTLYTYNSLINGLCLQ-GKTDEARDFLQEMADSGYNPDVVTYTVLINSLRRDGN 184
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 63/158 (39%), Gaps = 30/158 (18%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEE--------- 149
+ LRR A+ VF+ + + PD + Y +++ L K + + +E
Sbjct: 176 INSLRRDGNFRAAVDVFDEMVSKGGCVPDRASYMPLLIGLCKEGCVQLVQEFLEKHRARL 235
Query: 150 ---------LFCELKKEG-LDPDTRVYTEM-----------IGVYLQVGMIDKAMETYET 188
L L K G LD +V+ E+ + Q +I +A + YE
Sbjct: 236 DLGSFFHNLLISTLSKHGKLDDARKVFRELASPELVHFNSFMSALCQRKLISEAFQVYEQ 295
Query: 189 MKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
++ G P T+TILI L + G + +++ IQ
Sbjct: 296 LQKKGLVPDTYTYTILIGGLCDVGRTDQALSLKDTMIQ 333
>gi|297846140|ref|XP_002890951.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297336793|gb|EFH67210.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 689
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
++ E+D A ++F V ++ PDL YS +I K + M +LF + +G+ D
Sbjct: 190 KRGEMDRAFELFK-VMEQRGIAPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDV 248
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
V++ I VY++ G + A + Y+ M G +P+ +T+TILI+ L G
Sbjct: 249 VVFSSTIDVYVKFGYLTTAFDVYKRMLCQGISPNVVTYTILIKGLCQDG 297
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+ +I L ++ +I A ++C++ K GL+P Y+ +I + + G +
Sbjct: 281 PNVVTYTILIKGLCQDGRIYEAFGIYCQILKRGLEPSVVTYSSLIDGFCKYGNLRSGFAL 340
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
YE M G P + + +L+ L G
Sbjct: 341 YEDMIKMGYPPDVVIYGVLVDGLCKQG 367
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
+ L++F+ +++ D+++ + +I +L K + + A + F L + ++PD Y M
Sbjct: 476 IGLQLFDLMQRN-KIPADIAVCNVVINLLFKGQSVEEASKFFNNLLEGKMEPDIVTYNTM 534
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
I Y + +D+A +E +K + P+ +T TILI L
Sbjct: 535 ICGYCSLRRLDEAARIFEMLKFTPFGPNAVTLTILIHTL 573
>gi|307104938|gb|EFN53189.1| hypothetical protein CHLNCDRAFT_25863, partial [Chlorella
variabilis]
Length = 166
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
+S +I ++ + +A LF E+++EG P+ Y +IG Q GM KA E +++M
Sbjct: 5 FSSLISACERSGRCDLALRLFDEMRREGCRPNVVTYNGLIGACAQAGMWAKAAEVFDSMI 64
Query: 191 ASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVE 229
G P +TF++L+ E G+ R C+Q E
Sbjct: 65 GGGVRPDAVTFSVLVAAYERGGQW-------RRCLQAFE 96
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ R DLAL++F+ +R+E +P++ Y+ +I + A A E+F + G
Sbjct: 9 ISACERSGRCDLALRLFDEMRREG-CRPNVVTYNGLIGACAQAGMWAKAAEVFDSMIGGG 67
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTIL 204
+ PD ++ ++ Y + G + ++ +E M+ G P + ++
Sbjct: 68 VRPDAVTFSVLVAAYERGGQWRRCLQAFEQMQQQGFRPDACVYNVV 113
>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
lyrata]
gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
lyrata]
Length = 1114
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 62/127 (48%)
Query: 87 ICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAM 146
ICR + L+ + + N A +F K++ +P L Y+ +I L + I +
Sbjct: 746 ICRDGDSILVPIIRYSFKHNNASGARMLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEI 805
Query: 147 AEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
A+++F ++K G PD Y ++ Y + G ID+ E Y+ M A C P+ +T I+I
Sbjct: 806 AQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVIS 865
Query: 207 NLENAGE 213
L AG
Sbjct: 866 GLVKAGN 872
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++P L YS +++ LGK + I L E++ GL P+ +T I V + G I++A
Sbjct: 221 FRPSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAY 280
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYV 228
E + M GC P +T+T+LI + L A + DC + V
Sbjct: 281 EILKRMDDEGCGPDVVTYTVLI--------DALCTARKLDCAKEV 317
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 55/103 (53%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L + + L+ AL +FN ++K PDL Y+ +IL LG + A +++ E+++ G
Sbjct: 1005 INGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAG 1064
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF 201
L+P+ + +I Y G + A Y+TM G +P+ T+
Sbjct: 1065 LEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTY 1107
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE-GLDPDTRVYTEMIGVYLQVGM 178
KE PD+ Y+ +I LGK ++ A LF E+KK G+ PD Y +I GM
Sbjct: 990 KESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNLGIAGM 1049
Query: 179 IDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+++A + Y ++ +G P+ TF LIR +G+ E AV
Sbjct: 1050 VEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAV 1091
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P+ ++Y+ +I GK + A LF + KEG+ PD + Y+ ++ VG +D+ +
Sbjct: 925 RPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLH 984
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
+ +K SG P + + ++I L
Sbjct: 985 YFRELKESGLNPDVVCYNLIINGL 1008
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 2/141 (1%)
Query: 76 SSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMI 135
+ +L EG CR A + + E D A +F + KE +PDL YS ++
Sbjct: 912 AKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKE-GVRPDLKTYSVLV 970
Query: 136 LMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS-GC 194
L ++ F ELK+ GL+PD Y +I + +++A+ + MK S G
Sbjct: 971 DCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGI 1030
Query: 195 TPHKLTFTILIRNLENAGEEE 215
TP T+ LI NL AG E
Sbjct: 1031 TPDLYTYNSLILNLGIAGMVE 1051
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L + + +D A K+F KE+ KP + Y+ ++ LGKN +I A ELF + ++G
Sbjct: 547 INTLYKADRVDEAWKMF-MRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKG 605
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
P+T + + + + A++ M GC P T+ +I L G+
Sbjct: 606 CPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQ 660
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ E+D A+K+ + + + +PD+ + + +I L K ++ A ++F +K+ L P
Sbjct: 517 KVGEIDEAIKLLSEMVENCC-EPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTV 575
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y ++ + G I +A+E +E M GC P+ +TF L
Sbjct: 576 VTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLF 617
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L R+ LD A +VF + K +KPD Y ++ N+ + + + E+
Sbjct: 301 LIDALCTARK---LDCAKEVFAKM-KTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEM 356
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+K+G PD +T ++ + G +A + M+ G P+ T+ LI L
Sbjct: 357 EKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGL 410
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 129 SLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYET 188
SLYS + G++++ A+++F LK GL PD+ Y M+ Y +VG ID+A++
Sbjct: 476 SLYS--LAKAGRDRE---AKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSE 530
Query: 189 MKASGCTPHKLTFTILIRNLENA 211
M + C P + LI L A
Sbjct: 531 MVENCCEPDVIVVNSLINTLYKA 553
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+L Y+ +I L + ++ A E+F ++ G+ P Y I Y + G A+ET
Sbjct: 398 PNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALET 457
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEE 214
+E MK G P+ + + +L AG +
Sbjct: 458 FEKMKTKGIAPNIVACNASLYSLAKAGRD 486
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ ++ I +LG+ +I A E+ + EG PD YT +I +D A E
Sbjct: 257 KPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKE 316
Query: 185 TYETMKASGCTPHKLTFTILI 205
+ MK P ++T+ L+
Sbjct: 317 VFAKMKTGRHKPDRVTYITLL 337
Score = 40.0 bits (92), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I L +++ A+E+F ++K PD Y ++ + +D +
Sbjct: 293 PDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQF 352
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+ M+ G P +TFTIL+ L AG
Sbjct: 353 WSEMEKDGHVPDVVTFTILVDALCKAGN 380
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD++ Y+ ++ GK+ +I E++ E+ +P+T + +I ++ G +D A++
Sbjct: 820 PDVATYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDL 879
Query: 186 -YETMKASGCTPHKLTFTILIRNLENAG 212
Y+ M +P T+ LI L +G
Sbjct: 880 YYDLMSDRDFSPTACTYGPLIDGLSKSG 907
>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
Length = 855
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PD S YS +I L ++ A LF E+K G+ PD YT +I + + G+I++A
Sbjct: 284 FVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQ 343
Query: 184 ETYETMKASGCTPHKLTFTILIR 206
+E M++ GC+P +T+T LI
Sbjct: 344 WLFEEMRSVGCSPTVVTYTALIH 366
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ ++D A +VF + K Y P + Y+ +I + K+ ++ +A ++ ++ K+ P+
Sbjct: 491 KAGKIDSAQEVFLQMTK-CGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNV 549
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
YT MI ++G +KA++ M+ GC+P+ +T+T LI L AG+ +L
Sbjct: 550 VTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDL 602
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ LDLA+KV + + K+ P++ Y+ MI L + + A +L ++++G P+
Sbjct: 526 KDGRLDLAMKVLSQMLKDSC-TPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNV 584
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
YT +I + G ID +++ + M GC+P+ +T+ +LI +L AG
Sbjct: 585 VTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAG 633
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K V PD+ Y+ +I K I A+ LF E++ G P YT +I YL+ +
Sbjct: 315 KMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQV 374
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+A + + M +GC P+ +T+ L+ L AG
Sbjct: 375 PQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGN 408
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P+ +Y +I K +I A+E+F ++ K G P YT +I + G +D AM+
Sbjct: 476 EPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMK 535
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
M CTP+ +T+T +I L GE E
Sbjct: 536 VLSQMLKDSCTPNVVTYTAMIDGLCRIGESE 566
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query: 101 ELRRQNELDLALKVFN--FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+L + LDLA K++ V K +++ ++ + +GK + A +L E+ ++G
Sbjct: 227 KLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDK---AFQLIKEMMRKG 283
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
PDT Y+++I ++KA ++ MK G TP T+TILI + AG
Sbjct: 284 FVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAG 337
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R E + ALK+ + + +E P++ Y+ +I LGK +I ++ +LF ++ ++G P
Sbjct: 559 LCRIGESEKALKLLSLM-EEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSP 617
Query: 162 DTRVYTEMIGVYLQVGMIDKA 182
+ Y +I G++DKA
Sbjct: 618 NYVTYRVLINHLCAAGLLDKA 638
>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
Length = 764
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 2/120 (1%)
Query: 95 LLDTLTEL-RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
LL TL + R+ +D AL + + ++ + D+ LY+ I GK ++ MA + F E
Sbjct: 98 LLTTLIRVFSREGRVDAALSLLDEMKSNT-FDADIVLYNVCIDCFGKVGKVDMAWKFFHE 156
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+K GL PD YT M+GV + +D+A+E +E M+ + P + +I +AG+
Sbjct: 157 MKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGK 216
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
LT L ++ + D AL++F ++++ P+L Y+ +I ML K + A ++ +K+ G
Sbjct: 243 LTCLGKKGKTDKALRIFEEMKRDAM--PNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAG 300
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
L P+ R MI + +D+A +E M C+P TF LI L G
Sbjct: 301 LFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQG 354
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 59/111 (53%), Gaps = 4/111 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+ L+E+ E D L +FN + +E+ Y+ ++ L + +I + + ++ A L E+
Sbjct: 67 LIGALSEV---GESDRMLALFNQM-QELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEM 122
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
K D D +Y I + +VG +D A + + MKA+G P +T+T ++
Sbjct: 123 KSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMM 173
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LLD L + NE AL F + K++ P+ Y +I L K ++ A + E+
Sbjct: 591 LLDGLVKAEEINE---ALVCFQSM-KDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEM 646
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
+K+GL P+T YT MI + G + +A +E +ASG P ++ +I L A
Sbjct: 647 QKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFRASGGIPDSASYNAMIEGLSIA 703
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 71/182 (39%), Gaps = 41/182 (22%)
Query: 69 AMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVF------------- 115
A KL ++ S + EG ++C A + L +Q +D A +++
Sbjct: 318 AQKLDEACS-IFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVV 376
Query: 116 -------NFV---RKEVWYK-----------PDLSL---YSDMILMLGKNKQIAMAEELF 151
NF RKE +K PDL L Y D + G+ ++ LF
Sbjct: 377 VYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCVFKAGETEK---GRALF 433
Query: 152 CELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
E+K G PDTR Y+ +I ++ G + E Y MK GC + +I +
Sbjct: 434 EEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKS 493
Query: 212 GE 213
G+
Sbjct: 494 GK 495
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K + + P + Y ++ L K ++ A LF E K G++ + +Y+ +I + +VG +
Sbjct: 507 KTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRV 566
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
D+A E M G TP+ T+ L+ L A E
Sbjct: 567 DEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEE 600
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 46/79 (58%)
Query: 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM 189
+YS +I GK ++ A + E+ ++GL P+ + ++ ++ I++A+ +++M
Sbjct: 552 IYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSM 611
Query: 190 KASGCTPHKLTFTILIRNL 208
K CTP+++T+ ILI L
Sbjct: 612 KDLKCTPNQITYCILINGL 630
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + Y+ ++ LGK + A +F E+K++ + P+ Y +IG+ + G ++ A +
Sbjct: 234 PSVVAYNCILTCLGKKGKTDKALRIFEEMKRDAM-PNLPTYNIIIGMLCKAGNVEAAFKV 292
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ MK +G P+ T I+I L
Sbjct: 293 RDAMKEAGLFPNVRTINIMIDRL 315
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PD YS +I L K EL+ +K +G DTR Y +I + + G ++KA
Sbjct: 441 FLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAY 500
Query: 184 ETYETMKASGCTPHKLTFTILIRNL 208
+ E MK G P +T+ ++ L
Sbjct: 501 QLLEEMKTMGHHPTVVTYGSVVDGL 525
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L + +LD A +F + +V PD + + +I LGK ++ A ++ +
Sbjct: 312 IDRLCKAQKLDEACSIFEGMDYKVC-SPDGATFCSLIDGLGKQGRVDDAYRIYERMLDAD 370
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
P+ VYT +I + + + + Y+ M SGC+P + + + AGE E
Sbjct: 371 QIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCVFKAGETE 427
>gi|428186270|gb|EKX55120.1| hypothetical protein GUITHDRAFT_53115, partial [Guillardia theta
CCMP2712]
Length = 363
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ +YS ++ GK A +F ++K+EGL PD Y+ +I Y + G +A+E
Sbjct: 200 KPDIIVYSAVMAACGKAGLWEPAARIFQKMKREGLTPDVVAYSTLIQAYQRAGEWSRALE 259
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
++ M+ +G P+ + +T I AGE
Sbjct: 260 VFQLMEKAGVRPNVIAYTEAIAACAKAGE 288
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD +S I K + A ++ E++ +G++P+ + +I + G + KA E
Sbjct: 60 RPDTVTFSTAISACAKGGEWQRAMNMYHEMEAQGIEPNEFTFAALITACEKGGQVSKAFE 119
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
+E M+A G + TFT I + E G+
Sbjct: 120 VFERMQARGIVGNVYTFTAAISSCEKLGD 148
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 9/114 (7%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P+L YS I K + A L + E + PD VY+ ++ + G+ + A
Sbjct: 165 QPNLQAYSAAISACEKAAEARPALGLLERMTNEKIKPDIIVYSAVMAACGKAGLWEPAAR 224
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELV---------AAVRRDCIQYVE 229
++ MK G TP + ++ LI+ + AGE A VR + I Y E
Sbjct: 225 IFQKMKREGLTPDVVAYSTLIQAYQRAGEWSRALEVFQLMEKAGVRPNVIAYTE 278
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A ++F +++E PD+ YS +I + + + A E+F ++K G+ P+ YTE I
Sbjct: 222 AARIFQKMKREG-LTPDVVAYSTLIQAYQRAGEWSRALEVFQLMEKAGVRPNVIAYTEAI 280
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ G +++ E MKA P + + +I L G+
Sbjct: 281 AACAKAGEWRRSLGLLERMKADKLRPDAVAYNFVISALSRGGQ 323
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ----IAMAEELFCELKKE-----GL 159
+ AL+V + KE P Y+ + L +N + ++M + +F + ++ L
Sbjct: 1 EAALEVLKSIEKEG-LTPTRVSYNAAMSALTRNGRWREALSMFDSVFSQTERNKVAARSL 59
Query: 160 DPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
PDT ++ I + G +AM Y M+A G P++ TF LI E G+
Sbjct: 60 RPDTVTFSTAISACAKGGEWQRAMNMYHEMEAQGIEPNEFTFAALITACEKGGQ 113
>gi|224137548|ref|XP_002322585.1| predicted protein [Populus trichocarpa]
gi|222867215|gb|EEF04346.1| predicted protein [Populus trichocarpa]
Length = 243
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 123 WYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKA 182
+ PDL +Y+ +I + K+ ++ A ELF +L +GL PD R +T +I + G++D+A
Sbjct: 99 YLNPDLVIYNILIDAMCKSGKLEDARELFLKLHVKGLLPDVRSWTSIISGLCREGLLDEA 158
Query: 183 METYETMKASGCTPHKLTFTILIRN-LENAG 212
+ + M+ GC P ++ +++R L+N G
Sbjct: 159 YKAFRQMERDGCPPDCCSYNVIVRGFLQNNG 189
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+ +I K +I A++LF E+ GL P+T Y +I QVG I +A E
Sbjct: 8 PNVLSYNILINGSCKALRIDEAKQLFDEMSFRGLIPNTASYNTLISGLFQVGRILEAKEL 67
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
++ M A GC+P +T++IL+ L
Sbjct: 68 FKDMHAQGCSPDLVTYSILLDGL 90
>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 754
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 68/138 (49%), Gaps = 5/138 (3%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
D E ++ + +L++F ++++++W KP+ +Y+ +I +LG+ + + E+F E
Sbjct: 108 DFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKSTEIFEE 167
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ G+ YT +I Y + G + ++E E MK TP LT+ +I + G
Sbjct: 168 MPTHGVPRSVFSYTALINSYGRHGQYEVSLELLERMKKEKVTPSILTYNTVINSCARGGL 227
Query: 214 E-----ELVAAVRRDCIQ 226
L A +R + IQ
Sbjct: 228 NWEGLLSLFAEMRHEGIQ 245
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD++ Y +++ GK ++ EL E++ G PD Y ++ Y G I AM
Sbjct: 281 PDITTYRNLVETFGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGV 340
Query: 186 YETMKASGCTPHKLTFTILIR 206
+ M+ + C P+ +T+++L+
Sbjct: 341 FRQMQEARCVPNAVTYSMLLN 361
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y +I GK A+++ + ++G+ P T+ YT +I Y Q ++A+
Sbjct: 420 EPNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYTGVIEAYGQAASYEEALV 479
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ TM G P T+ LI G
Sbjct: 480 MFNTMNEMGSKPTVETYNSLINMFARGG 507
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D ++ +I + Q A + + EL+K PD R + ++ VY G++D++ E +
Sbjct: 527 DRDSFNGVIEGYRQGGQFEEAIKTYVELEKARFQPDERTFEAVLSVYCTAGLVDESEEQF 586
Query: 187 ETMKASGCTPHKLTFTILI 205
++ASG P + + ++I
Sbjct: 587 REIRASGILPSVMCYCMMI 605
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
LF E++ EG+ PD Y ++ G+ D+A + TM G P T+ L+
Sbjct: 235 LFAEMRHEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDITTYRNLV 290
>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
Length = 801
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PD S YS +I L ++ A LF E+K G+ PD YT +I + + G+I++A
Sbjct: 284 FVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQ 343
Query: 184 ETYETMKASGCTPHKLTFTILIR 206
+E M++ GC+P +T+T LI
Sbjct: 344 WLFEEMRSVGCSPTVVTYTALIH 366
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ ++D A +VF + K Y P + Y+ +I + K+ ++ +A ++ ++ K+ P+
Sbjct: 491 KAGKIDSAQEVFLQMTK-CGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNV 549
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
YT MI ++G +KA++ M+ GC+P+ +T+T LI L AG+ +L
Sbjct: 550 VTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDL 602
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ LDLA+KV + + K+ P++ Y+ MI L + + A +L ++++G P+
Sbjct: 526 KDGRLDLAMKVLSQMLKDSC-TPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNV 584
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
YT +I + G ID +++ + M GC+P+ +T+ +LI +L AG
Sbjct: 585 VTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAG 633
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K V PD+ Y+ +I K I A+ LF E++ G P YT +I YL+ +
Sbjct: 315 KMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQV 374
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+A + + M +GC P+ +T+ L+ L AG
Sbjct: 375 PQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGN 408
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P+ +Y +I K +I A+E+F ++ K G P YT +I + G +D AM+
Sbjct: 476 EPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMK 535
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
M CTP+ +T+T +I L GE E
Sbjct: 536 VLSQMLKDSCTPNVVTYTAMIDGLCRIGESE 566
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query: 101 ELRRQNELDLALKVFN--FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+L + LDLA K++ V K +++ ++ + +GK + A +L E+ ++G
Sbjct: 227 KLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDK---AFQLIKEMMRKG 283
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
PDT Y+++I ++KA ++ MK G TP T+TILI + AG
Sbjct: 284 FVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAG 337
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R E + ALK+ + + +E P++ Y+ +I LGK +I ++ +LF ++ ++G P
Sbjct: 559 LCRIGESEKALKLLSLM-EEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSP 617
Query: 162 DTRVYTEMIGVYLQVGMIDKA 182
+ Y +I G++DKA
Sbjct: 618 NYVTYRVLINHLCAAGLLDKA 638
>gi|440798589|gb|ELR19656.1| PPR repeat-containing protein [Acanthamoeba castellanii str. Neff]
Length = 366
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PDL ++S ++ +LGK +Q A F E+++ GL PDT ++ +I G +D A
Sbjct: 114 HTPDLFVFSGLLQVLGKARQPDKALHYFAEIERSGLTPDTHCFSALIAALGTAGRVDDAE 173
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAG 212
+ M G P+ F+ LI L AG
Sbjct: 174 RHFAQMTQLGVVPNAHCFSALIAALGTAG 202
>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
Length = 736
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PD S YS +I L ++ A LF E+K G+ PD YT +I + + G+I++A
Sbjct: 219 FVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQ 278
Query: 184 ETYETMKASGCTPHKLTFTILIR 206
+E M++ GC+P +T+T LI
Sbjct: 279 WLFEEMRSVGCSPTVVTYTALIH 301
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ ++D A +VF + K Y P + Y+ +I + K+ ++ +A ++ ++ K+ P+
Sbjct: 426 KAGKIDSAQEVFLQMTK-CGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNV 484
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
YT MI ++G +KA++ M+ GC+P+ +T+T LI L AG+ +L
Sbjct: 485 VTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDL 537
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ LDLA+KV + + K+ P++ Y+ MI L + + A +L ++++G P+
Sbjct: 461 KDGRLDLAMKVLSQMLKDSC-TPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNV 519
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
YT +I + G ID +++ + M GC+P+ +T+ +LI +L AG
Sbjct: 520 VTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAG 568
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K V PD+ Y+ +I K I A+ LF E++ G P YT +I YL+ +
Sbjct: 250 KMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQV 309
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+A + + M +GC P+ +T+ L+ L AG
Sbjct: 310 PQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGN 343
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P+ +Y +I K +I A+E+F ++ K G P YT +I + G +D AM+
Sbjct: 411 EPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMK 470
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
M CTP+ +T+T +I L GE E
Sbjct: 471 VLSQMLKDSCTPNVVTYTAMIDGLCRIGESE 501
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query: 101 ELRRQNELDLALKVFN--FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+L + LDLA K++ V K +++ ++ + +GK + A +L E+ ++G
Sbjct: 162 KLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDK---AFQLIKEMMRKG 218
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
PDT Y+++I ++KA ++ MK G TP T+TILI + AG
Sbjct: 219 FVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAG 272
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R E + ALK+ + + +E P++ Y+ +I LGK +I ++ +LF ++ ++G P
Sbjct: 494 LCRIGESEKALKLLSLM-EEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSP 552
Query: 162 DTRVYTEMIGVYLQVGMIDKA 182
+ Y +I G++DKA
Sbjct: 553 NYVTYRVLINHLCAAGLLDKA 573
>gi|222635128|gb|EEE65260.1| hypothetical protein OsJ_20463 [Oryza sativa Japonica Group]
Length = 1443
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++PD Y+ ++ K + E + EL K G D Y MI +Y ++G +D A+
Sbjct: 359 FQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLAL 418
Query: 184 ETYETMKASGCTPHKLTFTILIRNL 208
Y+ M+A GCTP +T+T+L+ +L
Sbjct: 419 GLYDEMRAIGCTPDAVTYTVLVDSL 443
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 89 RLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAE 148
++ K+ +L L + ++ +K++N + K Y P++ LY MI +L NK+ E
Sbjct: 849 KISKSTVLLMLEAFAKAGDVFEVMKIYNGM-KAAGYLPNMHLYRIMISLLCHNKRFRDVE 907
Query: 149 ELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ E++ G PD V ++ +Y G D+ +E Y ++ +G P + T+ LI
Sbjct: 908 LMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLI 964
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 1/135 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ LDLAL +++ +R + PD Y+ ++ LGK +I+ A ++ E+ GL P
Sbjct: 410 KMGRLDLALGLYDEMRA-IGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTL 468
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
++ +I Y + G D A T++ M SG P +L + +++ + E + + R
Sbjct: 469 VTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRA 528
Query: 224 CIQYVEFPERFLEEV 238
I+ P+ L +V
Sbjct: 529 MIKDGYKPDDGLYQV 543
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIA--MAEELFCELKKEGLDP 161
R D A ++ + +R + +PDL ++ +I K+ +A +A EL E+++ GL P
Sbjct: 233 RSGRFDDARQLLDAMRDQD-IEPDLVSFNTLINARAKSGCLAAGVALELLHEVRQAGLRP 291
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
D Y +I Q +D A+ +E M AS C P T+ ++
Sbjct: 292 DAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMV 335
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++ D Y+ MI M GK ++ +A L+ E++ G PD YT ++ ++ I +A
Sbjct: 394 FRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAG 453
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ E M +G P +TF+ LI +G ++
Sbjct: 454 KVLEEMADAGLKPTLVTFSALICAYAKSGRQD 485
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 4/129 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D+L ++ R +E A KV + + KP L +S +I K+ + AE F +
Sbjct: 439 LVDSLGKMDRISE---AGKVLEEM-ADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRM 494
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
+ G+ PD Y M+ V+ + K M Y M G P + +L+ L E
Sbjct: 495 VESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEH 554
Query: 215 ELVAAVRRD 223
+ + V +D
Sbjct: 555 DEIEGVIQD 563
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 13/96 (13%)
Query: 143 QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFT 202
Q A+AE++F +EG +V+ M+GVY + G D A + + M+ P ++F
Sbjct: 203 QDALAEDVFLRFAREG--ATVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFN 260
Query: 203 ILIRNLENAG-----------EEELVAAVRRDCIQY 227
LI +G E A +R D I Y
Sbjct: 261 TLINARAKSGCLAAGVALELLHEVRQAGLRPDAITY 296
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 10/127 (7%)
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
+AL++ + VR + +PD Y+ +I + + A +F E+ PD Y M
Sbjct: 276 VALELLHEVR-QAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAM 334
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE--------EELV-AAV 220
+ V+ + G +A ++ + G P +T+ L+ G+ EELV A
Sbjct: 335 VSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGF 394
Query: 221 RRDCIQY 227
R+D I Y
Sbjct: 395 RKDGITY 401
Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 59/125 (47%), Gaps = 5/125 (4%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
D ++V++ + E +PD Y+ +I+M +N + L E+ K GL P
Sbjct: 936 GNFDRTIEVYHSIL-EAGLEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGLTPKLES 994
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVR 221
Y ++ + + ++A +E M+ G ++ + ++++ NA E L++A++
Sbjct: 995 YKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMK 1054
Query: 222 RDCIQ 226
D I+
Sbjct: 1055 EDGIE 1059
>gi|168019305|ref|XP_001762185.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686589|gb|EDQ72977.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 237
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 51/82 (62%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + + ++ A+ LF ++ ++GL PD Y +I ++++ G KA++
Sbjct: 13 PDIVTYNTMIHICSRAGRVREAKSLFKKISEKGLVPDVASYNTLISMFIKRGEKQKALQY 72
Query: 186 YETMKASGCTPHKLTFTILIRN 207
Y+ MK +G TP +TF IL+++
Sbjct: 73 YQKMKTAGVTPDTVTFRILLKH 94
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 49/90 (54%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ MI G ++ A + E++ + + D +T +I VY ++G+++ Y+ MK
Sbjct: 104 YNAMIYAFGNAGRVDEAVRISMEMQNKAVKADVITHTTVITVYAKMGLMEGVSRVYKRMK 163
Query: 191 ASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+ C P ++T+ LI +N+G E+L A +
Sbjct: 164 RAQCEPDEVTYKQLIWIYKNSGREDLAAMI 193
>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Glycine max]
Length = 1024
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L ++ LDL LKV + + + P++ +Y+DMI L K + A L ++++ G
Sbjct: 686 INSLFKEKRLDLVLKVLSKMLENSC-TPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVG 744
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
P+ YT MI + ++G I++ +E Y M + GC P+ +T+ +LI + + G
Sbjct: 745 CYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLINHCCSTG 798
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PD S YS +I L ++ A LF E+KK G+ P YT +I + + G+I +A
Sbjct: 449 FVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQAR 508
Query: 184 ETYETMKASGCTPHKLTFTILIR 206
++ M CTP+ +T+T LI
Sbjct: 509 NWFDEMLRDNCTPNVVTYTSLIH 531
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 117 FVR-KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175
FV+ E Y P+L YS +I L K K++ + ++ ++ + P+ +YT+MI +
Sbjct: 667 FVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCK 726
Query: 176 VGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
VG ++A M+ GC P+ +T+T +I G+ E + RD
Sbjct: 727 VGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRD 774
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 16/133 (12%)
Query: 83 FQSRIC---RLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
F IC L +DLL+ L E LDL + V K ++S ++ + G
Sbjct: 383 FIGSICSNEELPGSDLLE-LAEKAYSEMLDLGV---------VLNKVNVSNFARCLCGAG 432
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
K + A E+ CE+ +G PD Y+++IG ++KA +E MK +G P
Sbjct: 433 KFDK---AFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVY 489
Query: 200 TFTILIRNLENAG 212
T+TILI + AG
Sbjct: 490 TYTILIDSFCKAG 502
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + Y+ +I K I A F E+ ++ P+ YT +I YL+ + A +
Sbjct: 486 PSVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKL 545
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+E M G P+ +T+T LI AG+
Sbjct: 546 FEMMLLEGSKPNVVTYTALIDGHCKAGQ 573
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 16/106 (15%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+ +I K +++ A +LF + EG P+ YT +I + + G IDKA +
Sbjct: 521 PNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQI 580
Query: 186 YETMKA---------------SGC-TPHKLTFTILIRNLENAGEEE 215
Y M+ + C TP+ +T+ L+ L A E
Sbjct: 581 YARMQGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANRVE 626
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
L+KE PDT Y M+ + + +AM+ + M++ C P+ +T+ IL+ G+
Sbjct: 263 LEKEEFVPDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQ 322
>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
Length = 996
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 4/120 (3%)
Query: 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
+ L+D L + +R LDLALKV + + + P++ +Y++MI L K + A L
Sbjct: 710 SSLIDRLFKDKR---LDLALKVLSRMLENSC-APNVIIYTEMIDGLCKVGKTDEAYRLMS 765
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
++++G P+ YT MI + + G +DK +E M A GC P+ +T+ +LI + AG
Sbjct: 766 MMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAG 825
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ +LD A VF + E Y P++ YS +I L K+K++ +A ++ + + P+
Sbjct: 683 KVGKLDEAQMVFTKM-SERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNV 741
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+YTEMI +VG D+A M+ GC P+ +T+T +I AG+
Sbjct: 742 IIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGK 791
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 11/124 (8%)
Query: 93 ADLLDTLTELRRQNELDLAL---------KVFNFVRKEV--WYKPDLSLYSDMILMLGKN 141
++LD L + N +LA K ++ +R+ + + PD S YS +I +L
Sbjct: 434 GEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNA 493
Query: 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF 201
++ A LF E+K + PD YT +I + +VG++ +A + ++ M GC P+ +T+
Sbjct: 494 SKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTY 553
Query: 202 TILI 205
T LI
Sbjct: 554 TALI 557
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I K + A + F E+ ++G P+ YT +I YL+ + A E
Sbjct: 513 PDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANEL 572
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+E M + GC P+ +T+T LI +G+ E
Sbjct: 573 FEMMLSEGCIPNVVTYTALIDGHCKSGQIE 602
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
E+ +G PDT Y+++IG+ +D A +E MK++ P T+TILI + G
Sbjct: 470 EMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVG 529
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y ++ L K ++ A +L + EG +P+ VY +I + +VG +D+A
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ M G P+ T++ LI L
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRL 716
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+ +I K ++++ A ELF + EG P+ YT +I + + G I+KA +
Sbjct: 548 PNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQI 607
Query: 186 YETMKASGCTP 196
Y M+ + P
Sbjct: 608 YARMRGNADIP 618
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
++KE DT +YT+MI + + ++AM+ M++S C P+ +T+ IL+
Sbjct: 290 IEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILL 341
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 8/117 (6%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y ++ + +Q+ + + + EG P R++ +I Y + G A +
Sbjct: 332 PNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKL 391
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVYQKH 242
+ M GC P + + ILI + G E+L + + +E E+ E+ H
Sbjct: 392 LKKMGDCGCQPGYVVYNILIGGI--CGNEKLPS------LDVLELAEKAYGEMLDAH 440
>gi|15228104|ref|NP_181260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216851|sp|Q9ZUU3.1|PP190_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37230
gi|4056478|gb|AAC98044.1| unknown protein [Arabidopsis thaliana]
gi|28973644|gb|AAO64144.1| unknown protein [Arabidopsis thaliana]
gi|110736716|dbj|BAF00321.1| hypothetical protein [Arabidopsis thaliana]
gi|330254276|gb|AEC09370.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 757
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
L+ AL+ F + K PD + ++ MI + K++ AE+LF E+K + P YT
Sbjct: 271 LETALRFFEDM-KTRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSYT 329
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
MI YL V +D + +E M++SG P+ T++ L+ L +AG+
Sbjct: 330 TMIKGYLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGK 375
>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
Length = 731
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R E+D A ++ +R E KP+L ++ M+ + K ++ A ++F E+ +EGL PD
Sbjct: 237 RAGEVDGAERLVGMMR-EGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDG 295
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE-EELVAAVRR 222
Y ++G Y + G +A+ + M G P +TFT LI + AG E V VR+
Sbjct: 296 VSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQ 355
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD YS +I +L K+++ A LF + K GL PD YT +I + + G ++ A+
Sbjct: 468 PDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSL 527
Query: 186 YETMKASGCTPHKLTFTILIRNLE 209
++ M +G P +T+++LI L
Sbjct: 528 HDKMVKAGVLPDVVTYSVLINGLS 551
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 120 KEVWYKPDLSLYSDMI---LMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176
K+ KP + Y+ +I M+G+ + A EL E++ +GL PD Y+ +I Y +
Sbjct: 392 KQCRIKPSVVCYNALINGYCMVGRMDE---ARELLHEMEAKGLKPDVVTYSTIISAYCKN 448
Query: 177 GMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAA 219
A E + M G P +T++ LIR L GE+ L A
Sbjct: 449 CDTHSAFELNQQMLEKGVLPDAITYSSLIRVL--CGEKRLSDA 489
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y P + Y+ ++L L + + A F + +G+ P+ Y ++ G +A+
Sbjct: 152 YVPSVLAYNAVLLAL-SDASLTSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEAL 210
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVR 221
M+ +GC P+ +T+ L+ AGE E LV +R
Sbjct: 211 SILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMR 252
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ +++ A KVF+ + +E PD Y+ ++ K A +F E+ ++G+ PD
Sbjct: 272 KAGKMEDARKVFDEMVRE-GLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDV 330
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+T +I V + G +++A+ M+ G +++TFT LI
Sbjct: 331 VTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALI 372
>gi|255566203|ref|XP_002524089.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536657|gb|EEF38299.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1072
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 65/117 (55%)
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
LA + F++V+ + Y M+ + G+ K+ + ++L E++K + D + ++ +
Sbjct: 192 LAFRFFSWVKMRDGFCHTTKTYYTMLYIAGEAKEFKVVDDLVEEMEKNSCEKDIKTWSIL 251
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
I + + +I KA+ +E MK SGC P + + +++ +L NAG+ E+ A ++ +Q
Sbjct: 252 ISQFGKAKLIGKALLFFEKMKTSGCEPDEKIYKMMVHSLCNAGKGEVALAFYKEMVQ 308
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR---NLEN 210
+K+ G++P VYT +I + + I+KAM+ +E M+ GC P +T++ LIR N+E
Sbjct: 921 MKEAGINPTVHVYTSLIVHFFKEKQIEKAMQIFEKMQQDGCEPTVVTYSALIRGYMNMER 980
Query: 211 AGE 213
A +
Sbjct: 981 ADD 983
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+ +L A+++F + KE +P S Y++++ L Q ELF E+ + G+ D+
Sbjct: 431 RKKDLSKAIELFQRM-KESGIQPITSTYTELMQCLFNLNQYDKGFELFNEMLERGIRVDS 489
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
++ +++ I +A E + TMK G P +++I I+ L
Sbjct: 490 VATMAIVAAHVRQNHISEAWEVFNTMKDKGANPTWKSYSIFIKEL 534
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ +S +I GK K I A F ++K G +PD ++Y M+ G + A+ Y
Sbjct: 244 DIKTWSILISQFGKAKLIGKALLFFEKMKTSGCEPDEKIYKMMVHSLCNAGKGEVALAFY 303
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
+ M + IL+ ++ +G+ V V D + + PE
Sbjct: 304 KEMVQKDMRLDLSLYKILLISMAKSGDVGAVHLVANDMSRLSQIPE 349
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 90 LLKADLLDTLTE-LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAE 148
L+ + L TL + L R + + A+++ ++K D +Y +I + K ++ A
Sbjct: 382 LIDYEYLGTLVKGLCRGDRITDAVEIVEIMKKRNLI--DAKIYGIIINGYLRKKDLSKAI 439
Query: 149 ELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG 193
ELF +K+ G+ P T YTE++ + DK E + M G
Sbjct: 440 ELFQRMKESGIQPITSTYTELMQCLFNLNQYDKGFELFNEMLERG 484
>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
Length = 1010
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 4/120 (3%)
Query: 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
+ L+D L + +R LDLALKV + + + P++ +Y++MI L K + A L
Sbjct: 710 SSLIDRLFKDKR---LDLALKVLSRMLENSC-APNVIIYTEMIDGLCKVGKTDEAYRLMS 765
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
++++G P+ YT MI + + G +DK +E M A GC P+ +T+ +LI + AG
Sbjct: 766 MMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAG 825
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ +LD A VF + E Y P++ YS +I L K+K++ +A ++ + + P+
Sbjct: 683 KVGKLDEAQMVFTKM-SERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNV 741
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+YTEMI +VG D+A M+ GC P+ +T+T +I AG+
Sbjct: 742 IIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGK 791
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 11/124 (8%)
Query: 93 ADLLDTLTELRRQNELDLAL---------KVFNFVRKEV--WYKPDLSLYSDMILMLGKN 141
++LD L + N +LA K ++ +R+ + + PD S YS +I +L
Sbjct: 434 GEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNA 493
Query: 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF 201
++ A LF E+K + PD YT +I + +VG++ +A + ++ M GC P+ +T+
Sbjct: 494 SKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTY 553
Query: 202 TILI 205
T LI
Sbjct: 554 TALI 557
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I K + A + F E+ ++G P+ YT +I YL+ + A E
Sbjct: 513 PDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANEL 572
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+E M + GC P+ +T+T LI +G+ E
Sbjct: 573 FEMMLSEGCIPNVVTYTALIDGHCKSGQIE 602
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
E+ +G PDT Y+++IG+ +D A +E MK++ P T+TILI + G
Sbjct: 470 EMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVG 529
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y ++ L K ++ A +L + EG +P+ VY +I + +VG +D+A
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ M G P+ T++ LI L
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRL 716
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+ +I K ++++ A ELF + EG P+ YT +I + + G I+KA +
Sbjct: 548 PNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQI 607
Query: 186 YETMKASGCTP 196
Y M+ + P
Sbjct: 608 YARMRGNADIP 618
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
++KE DT +YT+MI + + ++AM+ M++S C P+ +T+ IL+
Sbjct: 290 IEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILL 341
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 8/117 (6%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y ++ + +Q+ + + + EG P R++ +I Y + G A +
Sbjct: 332 PNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKL 391
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVYQKH 242
+ M GC P + + ILI + G E+L + + +E E+ E+ H
Sbjct: 392 LKKMGDCGCQPGYVVYNILIGGI--CGNEKLPS------LDVLELAEKAYGEMLDAH 440
>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
Length = 708
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
RQ + + +L FN + K V + PD+ Y+ +I + KQ+ +E LF E GL P
Sbjct: 482 RQADTNRSLVFFNKMLK-VGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTK 540
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ YT MI Y + G A++ ++ M GC P +T+ LI L
Sbjct: 541 KTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGL 585
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A ++F + + YKP++ Y+ MI K ++ AE L ++++GL P+T YT +I
Sbjct: 348 AFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLI 407
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ +VG +A E + M G +P+ T+ +I L G
Sbjct: 408 DGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGS 450
>gi|449469490|ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Cucumis sativus]
Length = 864
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 72/143 (50%), Gaps = 5/143 (3%)
Query: 89 RLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAE 148
RL D E + + +L++F ++++++W KP+ +Y+ +I +LG+ +
Sbjct: 109 RLSLNDFSLVFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCS 168
Query: 149 ELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR-- 206
E+F E+ +G+ YT +I Y + G + ++E E MK +P+ LT+ +I
Sbjct: 169 EIFDEMASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINAC 228
Query: 207 ---NLENAGEEELVAAVRRDCIQ 226
+L+ G L A +R + +Q
Sbjct: 229 ARGDLDWEGLLGLFAEMRHEGVQ 251
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 48/81 (59%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+++ YS ++ GK ++ L E++ EG PD Y +I + ++G I +AM+
Sbjct: 287 PEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDV 346
Query: 186 YETMKASGCTPHKLTFTILIR 206
++ M+A+GC P+ T++IL+
Sbjct: 347 FKQMQAAGCVPNASTYSILLN 367
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y PD+S Y+ +I K I A ++F +++ G P+ Y+ ++ +Y + G D
Sbjct: 320 YLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVR 379
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCI 225
E + MK S P T+ ILIR G + V + D +
Sbjct: 380 ELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLV 421
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209
LF E++ EG+ PD Y ++ G+ D+A ++TM G P T++ ++
Sbjct: 241 LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFG 300
Query: 210 NAGEEELVA 218
G+ E VA
Sbjct: 301 KLGKLEKVA 309
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 15/79 (18%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM------- 178
P+ S YS ++ + GK+ + ELF ++K+ +PD Y +I V+ + G
Sbjct: 357 PNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTL 416
Query: 179 --------IDKAMETYETM 189
ID METYE +
Sbjct: 417 FHDLVDENIDPNMETYEGL 435
>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Brachypodium distachyon]
Length = 757
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 52/88 (59%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD + ++ +I+ L Q+ A +L EL +GL P+ + +I +VG A+
Sbjct: 369 PDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRL 428
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+E MK+SGCTP ++T+ ILI NL ++G+
Sbjct: 429 FEEMKSSGCTPDEVTYNILIDNLCSSGK 456
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + +D ALKV + +E +PD+ YS +I L N ++ A+ + ++ G P
Sbjct: 311 LCQNGHVDHALKVLGLMLQE-GCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLP 369
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
DT + +I +++A++ + G +P+ TF ILI L G+ L AVR
Sbjct: 370 DTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHL--AVR 427
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 115 FNFVRKEV--WYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGV 172
++++E+ ++PD +S + L +N + A ++ + +EG +PD Y+ +I
Sbjct: 286 LGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINC 345
Query: 173 YLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL--ENAGEEEL 216
G +++A M SGC P TF LI L EN EE L
Sbjct: 346 LCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEAL 391
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
P++ ++ +I L K +A LF E+K G PD Y +I G + KA++
Sbjct: 403 SPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALD 462
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
+ M+ SGC +T+ +I L
Sbjct: 463 LLKEMEVSGCPQSTVTYNTIIDGL 486
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
++ +I L ++I A EL ++ EGL P+ Y ++ Y + G I KA + +TM
Sbjct: 514 FNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMT 573
Query: 191 ASGCTPHKLTFTILIRNL 208
A+G +T+ LI L
Sbjct: 574 ANGFEVDVVTYATLINGL 591
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 41/83 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ ++ +I L + +Q A + E+ + PD +T ++ +++ G I+ A+
Sbjct: 193 EPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALR 252
Query: 185 TYETMKASGCTPHKLTFTILIRN 207
M GC+P +T +LI
Sbjct: 253 LKARMSEMGCSPTSVTVNVLING 275
>gi|449487793|ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Cucumis sativus]
Length = 864
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 72/143 (50%), Gaps = 5/143 (3%)
Query: 89 RLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAE 148
RL D E + + +L++F ++++++W KP+ +Y+ +I +LG+ +
Sbjct: 109 RLSLNDFSLVFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCS 168
Query: 149 ELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR-- 206
E+F E+ +G+ YT +I Y + G + ++E E MK +P+ LT+ +I
Sbjct: 169 EIFDEMASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINAC 228
Query: 207 ---NLENAGEEELVAAVRRDCIQ 226
+L+ G L A +R + +Q
Sbjct: 229 ARGDLDWEGLLGLFAEMRHEGVQ 251
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 48/81 (59%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+++ YS ++ GK ++ L E++ EG PD Y +I + ++G I +AM+
Sbjct: 287 PEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDV 346
Query: 186 YETMKASGCTPHKLTFTILIR 206
++ M+A+GC P+ T++IL+
Sbjct: 347 FKQMQAAGCVPNASTYSILLN 367
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y PD+S Y+ +I K I A ++F +++ G P+ Y+ ++ +Y + G D
Sbjct: 320 YLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVR 379
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCI 225
E + MK S P T+ ILIR G + V + D +
Sbjct: 380 ELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLV 421
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209
LF E++ EG+ PD Y ++ G+ D+A ++TM G P T++ ++
Sbjct: 241 LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFG 300
Query: 210 NAGEEELVA 218
G+ E VA
Sbjct: 301 KLGKLEKVA 309
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 15/79 (18%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM------- 178
P+ S YS ++ + GK+ + ELF ++K+ +PD Y +I V+ + G
Sbjct: 357 PNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTL 416
Query: 179 --------IDKAMETYETM 189
ID METYE +
Sbjct: 417 FHDLVDENIDPNMETYEGL 435
>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic [Vitis vinifera]
Length = 772
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ +I L KN+++ A +L ++ EGL PD Y ++ + + G I KA + +TM
Sbjct: 529 YNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMT 588
Query: 191 ASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
++GC P +T+ LI L AG EL + + R
Sbjct: 589 SNGCEPDSVTYGTLILGLSKAGRVELASRLLR 620
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD++ ++ +I L + QI A + E+ GL PD + +T ++ +++ G ++ A+
Sbjct: 208 KPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALR 267
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERF 234
E M A+GC +T +L+ G E V + + P+RF
Sbjct: 268 IREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRF 317
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 126 PDLSLYSDMI--LMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
PD+ ++ +I L L N ++AM ELF E+K +G PD Y +I G +++A+
Sbjct: 419 PDVCTFNSLIQGLCLTNNHRLAM--ELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEAL 476
Query: 184 ETYETMKASGCTPHKLTFTILI 205
+ M++SGC+ + +T+ LI
Sbjct: 477 SLLKEMESSGCSRNVVTYNTLI 498
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++PD ++ ++ L + + A E+ + +EG DPD Y +I ++G +++A+
Sbjct: 312 FRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAV 371
Query: 184 ETYETMKASGCTPHKLTFTILIRNL--ENAGEE 214
E M +P+ +T+ LI L EN EE
Sbjct: 372 EILNQMILRDFSPNTVTYNTLISTLCKENQVEE 404
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL++ + + +E + PD+ Y+ +I L K ++ A E+ ++ P+T Y +I
Sbjct: 335 ALEILDVMLQE-GFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLI 393
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ +++A E + + G P TF LI+ L
Sbjct: 394 STLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 431
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
LRRQ++ D L + ++ K+ + P +Y +++ LGK+ + E+K G +
Sbjct: 79 LRRQSDEDSILDLLDWASKQPNFVPSSVIYEEVLRKLGKDGSFGSMRRVLQEMKHTGCEI 138
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKAS-GCTPHKLTFTILIRNLENAGEEELVAAV 220
+ +I Y + + D+A+ + M+ G T+ L+ L + + +LV V
Sbjct: 139 RRGTFLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLVEIV 198
Query: 221 R 221
Sbjct: 199 N 199
>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 528
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 55/99 (55%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ Y+ ++ MLGK + A LF ++K +G++PDT Y I +D+A+
Sbjct: 412 RPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALV 471
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
++ MKA GC K + ILIR AG+ EL A ++ +
Sbjct: 472 LFKDMKAVGCPVDKAMYRILIRAAHRAGDTELEAQLKHE 510
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R +LD A+++F ++ + +PD Y ++ LGK ++ A F + + GL P+
Sbjct: 112 RSGQLDSAMEMFREMKIK-GSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNI 170
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
Y ++ + +VG +D A+ + MK G P +T+ IL+ L +AG V A R+
Sbjct: 171 PTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGR---VGAARK 226
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L + N+ D A +VF + E KPDL Y+ +I + A A ++ E+ + G
Sbjct: 317 MDALGKANKPDAAREVFARM-VESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAG 375
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
P+T+ Y +I G +D+A E M+ +GC P +T+ L+ L GE + A
Sbjct: 376 FIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAA 435
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 108 LDLALKVFNFVRKEVWYKP--------DLSLYSDMILMLGKNKQIAMAEELFCELKKEGL 159
+D+ + F R E+ YK D Y+ +I G++ Q+ A E+F E+K +G
Sbjct: 72 IDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGS 131
Query: 160 DPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
+PD Y ++ + G + +A ++ M G TP+ T+ +L+ G+ ++
Sbjct: 132 EPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMA 189
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 16/167 (9%)
Query: 76 SSKLEEG---FQSRICRLLKADLLD---TLTELRRQNELDLALKVFNFVRKEVWYKPDLS 129
S ++EE F+ + R + DL++ L L + +D K+ + ++ + PD
Sbjct: 253 SGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRK-GFHPDAF 311
Query: 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM 189
++ ++ LGK + A E+F + + G PD Y +I Y + G +A + E M
Sbjct: 312 SFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEM 371
Query: 190 KASGCTPHKLTFTILIRNLENAG---------EEELVAAVRRDCIQY 227
+G P T+ LI L G EE A R D + Y
Sbjct: 372 VEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTY 418
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/136 (19%), Positives = 66/136 (48%), Gaps = 1/136 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ R+ +LD+AL +F +++ ++P + Y+ ++ L ++ A +LF ++ +G
Sbjct: 177 MDAFRKVGQLDMALGLFAEMKRR-GFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDG 235
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
PD+ Y+ ++ + G +++A + + M G + + L+ L AG + V
Sbjct: 236 CSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVW 295
Query: 219 AVRRDCIQYVEFPERF 234
+ ++ + P+ F
Sbjct: 296 KLMKEMSRKGFHPDAF 311
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 42/90 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD YS ++ LGK+ ++ A ++F E+ G+ D Y ++ + G +D+ +
Sbjct: 238 PDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKL 297
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ M G P +F ++ L A + +
Sbjct: 298 MKEMSRKGFHPDAFSFNTIMDALGKANKPD 327
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 37/80 (46%)
Query: 134 MILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG 193
+I G+ + A +LF + + P +T++I + + G ++A Y+ + G
Sbjct: 36 LITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKG 95
Query: 194 CTPHKLTFTILIRNLENAGE 213
C + + +LIR +G+
Sbjct: 96 CQLDRFAYNVLIRYFGRSGQ 115
>gi|224132330|ref|XP_002328242.1| predicted protein [Populus trichocarpa]
gi|222837757|gb|EEE76122.1| predicted protein [Populus trichocarpa]
Length = 893
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ E +Q +L LA + + E+ KP +++Y +I L + ++I+ AE LFC + + G
Sbjct: 557 VNEYCKQEDLALAFGILEQM-DEMGLKPSVAIYDCIIACLSQQRRISEAETLFCRMLENG 615
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+DPD Y MI Y + G KA+ +E M + P ++T L+
Sbjct: 616 VDPDEVAYMTMINAYARNGKGVKALHLFEMMIKNAIQPSSYSYTALV 662
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D +Y+ ++ G++K++ MA ++ + K G DPD +I + ++G+ DKA Y
Sbjct: 267 DKVMYTSLMNAYGRDKKMKMALRVYFRMLKNGYDPDICTCNTLIYGFSKMGLFDKAWVLY 326
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGE 213
M G P+++T++I+I N G+
Sbjct: 327 NLMNDLGIQPNEVTYSIMIHNYCKKGK 353
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 7/123 (5%)
Query: 119 RKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELK---KEGLDPDTRVYTEMIGVYLQ 175
K + P+L LY+ + + + + E+ + +L+ +EGL P+ +T +IG + +
Sbjct: 676 NKRTGFMPNLYLYN---VTVSGFCWVNLIEDAYHQLRLMQEEGLLPNEVTFTILIGAHGR 732
Query: 176 VGMIDKAMETYETMKASGC-TPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERF 234
G ID+A+ + M A GC TP + T+ L+++L +G E ++ + FP R
Sbjct: 733 AGEIDRAIGLFNRMNADGCSTPDRCTYNTLLKSLCRSGRELDALSLVHTISKRGFFPNRL 792
Query: 235 LEE 237
E
Sbjct: 793 AYE 795
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 129 SLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYET 188
S YS L+ G N+++++ E E K+ G P+ +Y + + V +I+ A
Sbjct: 654 SSYSYTALVAG-NRRLSI--EAHAENKRTGFMPNLYLYNVTVSGFCWVNLIEDAYHQLRL 710
Query: 189 MKASGCTPHKLTFTILIRNLENAGE 213
M+ G P+++TFTILI AGE
Sbjct: 711 MQEEGLLPNEVTFTILIGAHGRAGE 735
>gi|147767652|emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
Length = 1563
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 84/166 (50%), Gaps = 12/166 (7%)
Query: 55 RSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKV 114
R V + A +AVHA +++E+ + + ++ + ++ +L++ RR E A
Sbjct: 1221 RRYVKAGLAAEAVHAF------NRMED-YGCKPDKIAFSVVISSLSKKRRAIE---AQSF 1270
Query: 115 FNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYL 174
F+ ++ ++PD+ +Y+ ++ + I+ AE +F E+K G+ P+ Y+ +I
Sbjct: 1271 FDSLKDR--FEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIXPNVYTYSIVIDALC 1328
Query: 175 QVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+ G I +A + + M GC P+ +TF L+R AG E V V
Sbjct: 1329 RSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQV 1374
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 8/105 (7%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ YS +I L ++ QI A ++F E+ G DP+ + ++ V+++ G +K ++
Sbjct: 1315 PNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQV 1374
Query: 186 YETMKASGCTPHKLTFTILIR------NLENAGEEELVAAVRRDC 224
Y MK GC P +T+ LI NLE A +++ +V++ C
Sbjct: 1375 YNQMKRLGCPPDAITYNFLIESHCRDDNLEEA--VKILNSVKKGC 1417
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 44/78 (56%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y +MI + GK +Q +A +L +K ++ +T ++ Y++ G+ +A+ + M+
Sbjct: 1181 YMEMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAFNRME 1240
Query: 191 ASGCTPHKLTFTILIRNL 208
GC P K+ F+++I +L
Sbjct: 1241 DYGCKPDKIAFSVVISSL 1258
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 112 LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIG 171
L+V+N + K + PD Y+ +I ++ + A ++ +KK G + + + + G
Sbjct: 1372 LQVYNQM-KRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVKK-GCNLNASSFNPIFG 1429
Query: 172 VYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
++G ++ A + MK C P+ +T+ IL+R + ++V +R++
Sbjct: 1430 CISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKE 1481
>gi|115466932|ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group]
gi|51091829|dbj|BAD36643.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113595105|dbj|BAF18979.1| Os06g0199100 [Oryza sativa Japonica Group]
Length = 1283
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++PD Y+ ++ K + E + EL K G D Y MI +Y ++G +D A+
Sbjct: 199 FQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLAL 258
Query: 184 ETYETMKASGCTPHKLTFTILIRNL 208
Y+ M+A GCTP +T+T+L+ +L
Sbjct: 259 GLYDEMRAIGCTPDAVTYTVLVDSL 283
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 89 RLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAE 148
++ K+ +L L + ++ +K++N + K Y P++ LY MI +L NK+ E
Sbjct: 689 KISKSTVLLMLEAFAKAGDVFEVMKIYNGM-KAAGYLPNMHLYRIMISLLCHNKRFRDVE 747
Query: 149 ELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ E++ G PD V ++ +Y G D+ +E Y ++ +G P + T+ LI
Sbjct: 748 LMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLI 804
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 1/135 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ LDLAL +++ +R + PD Y+ ++ LGK +I+ A ++ E+ GL P
Sbjct: 250 KMGRLDLALGLYDEMRA-IGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTL 308
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
++ +I Y + G D A T++ M SG P +L + +++ + E + + R
Sbjct: 309 VTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRA 368
Query: 224 CIQYVEFPERFLEEV 238
I+ P+ L +V
Sbjct: 369 MIKDGYKPDDGLYQV 383
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIA--MAEELFCELKKEGLDP 161
R D A ++ + +R + +PDL ++ +I K+ +A +A EL E+++ GL P
Sbjct: 73 RSGRFDDARQLLDAMRDQD-IEPDLVSFNTLINARAKSGCLAAGVALELLHEVRQAGLRP 131
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
D Y +I Q +D A+ +E M AS C P T+ ++
Sbjct: 132 DAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMV 175
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++ D Y+ MI M GK ++ +A L+ E++ G PD YT ++ ++ I +A
Sbjct: 234 FRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAG 293
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ E M +G P +TF+ LI +G ++
Sbjct: 294 KVLEEMADAGLKPTLVTFSALICAYAKSGRQD 325
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 4/129 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D+L ++ R +E A KV + + KP L +S +I K+ + AE F +
Sbjct: 279 LVDSLGKMDRISE---AGKVLEEM-ADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRM 334
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
+ G+ PD Y M+ V+ + K M Y M G P + +L+ L E
Sbjct: 335 VESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEH 394
Query: 215 ELVAAVRRD 223
+ + V +D
Sbjct: 395 DEIEGVIQD 403
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 10/127 (7%)
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
+AL++ + VR + +PD Y+ +I + + A +F E+ PD Y M
Sbjct: 116 VALELLHEVR-QAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAM 174
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE--------EELV-AAV 220
+ V+ + G +A ++ + G P +T+ L+ G+ EELV A
Sbjct: 175 VSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGF 234
Query: 221 RRDCIQY 227
R+D I Y
Sbjct: 235 RKDGITY 241
Score = 37.0 bits (84), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 59/125 (47%), Gaps = 5/125 (4%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
D ++V++ + E +PD Y+ +I+M +N + L E+ K GL P
Sbjct: 776 GNFDRTIEVYHSIL-EAGLEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGLTPKLES 834
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVR 221
Y ++ + + ++A +E M+ G ++ + ++++ NA E L++A++
Sbjct: 835 YKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMK 894
Query: 222 RDCIQ 226
D I+
Sbjct: 895 EDGIE 899
>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Vitis vinifera]
Length = 1045
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 4/120 (3%)
Query: 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
+ L+D L + +R LDLALKV + + + P++ +Y++MI L K + A L
Sbjct: 710 SSLIDRLFKDKR---LDLALKVLSRMLENSC-APNVIIYTEMIDGLCKVGKTDEAYRLMS 765
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
++++G P+ YT MI + + G +DK +E M A GC P+ +T+ +LI + AG
Sbjct: 766 MMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAG 825
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ +LD A VF + E Y P++ YS +I L K+K++ +A ++ + + P+
Sbjct: 683 KVGKLDEAQMVFTKM-SERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNV 741
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+YTEMI +VG D+A M+ GC P+ +T+T +I AG+
Sbjct: 742 IIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGK 791
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 11/124 (8%)
Query: 93 ADLLDTLTELRRQNELDLAL---------KVFNFVRKEV--WYKPDLSLYSDMILMLGKN 141
++LD L + N +LA K ++ +R+ + + PD S YS +I +L
Sbjct: 434 GEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNA 493
Query: 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF 201
++ A LF E+K + PD YT +I + +VG++ +A + ++ M GC P+ +T+
Sbjct: 494 SKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTY 553
Query: 202 TILI 205
T LI
Sbjct: 554 TALI 557
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I K + A + F E+ ++G P+ YT +I YL+ + A E
Sbjct: 513 PDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANEL 572
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+E M + GC P+ +T+T LI +G+ E
Sbjct: 573 FEMMLSEGCIPNVVTYTALIDGHCKSGQIE 602
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
E+ +G PDT Y+++IG+ +D A +E MK++ P T+TILI + G
Sbjct: 470 EMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVG 529
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y ++ L K ++ A +L + EG +P+ VY +I + +VG +D+A
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ M G P+ T++ LI L
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRL 716
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+ +I K ++++ A ELF + EG P+ YT +I + + G I+KA +
Sbjct: 548 PNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQI 607
Query: 186 YETMKASGCTP 196
Y M+ + P
Sbjct: 608 YARMRGNADIP 618
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
++KE DT +YT+MI + + ++AM+ M++S C P+ +T+ IL+
Sbjct: 290 IEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILL 341
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 8/117 (6%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y ++ + +Q+ + + + EG P R++ +I Y + G A +
Sbjct: 332 PNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKL 391
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVYQKH 242
+ M GC P + + ILI + G E+L + + +E E+ E+ H
Sbjct: 392 LKKMGDCGCQPGYVVYNILIGGI--CGNEKLPS------LDVLELAEKAYGEMLDAH 440
>gi|218190151|gb|EEC72578.1| hypothetical protein OsI_06020 [Oryza sativa Indica Group]
Length = 738
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
++KVFN + K + KP++ Y+ ++ + AEE+F E+++ G +PD Y ++
Sbjct: 442 SMKVFNEM-KSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALM 500
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
Y + G+ A E + M+ GC P + ++ IL+ AG E AV
Sbjct: 501 EAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAV 550
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 61/147 (41%), Gaps = 35/147 (23%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELF-- 151
DL++ + R + DL + V ++ ++PD+ Y+ +I GK +Q+ AE ++
Sbjct: 284 DLVNVAVQFRMNKKWDLIIPVCEWILYRSSFRPDIICYNLLIESYGKKRQLNKAESIYMA 343
Query: 152 ---------------------------------CELKKEGLDPDTRVYTEMIGVYLQVGM 178
E+++ G+ P+ VY + L+
Sbjct: 344 LLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARC 403
Query: 179 IDKAMETYETMKASGCTPHKLTFTILI 205
+KA+E Y+ MK C + TFT++I
Sbjct: 404 TEKAVEVYQRMKRERCRANTETFTLMI 430
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A++V+ +++E + + ++ MI + GK KQ + ++F E+K G P+ YT ++
Sbjct: 407 AVEVYQRMKRER-CRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALV 465
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ + G+ +KA E +E M+ +G P + L+ AG
Sbjct: 466 NAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAG 507
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+ ++Y+ + L K + A E++ +K+E +T +T MI VY + +M+
Sbjct: 386 PNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKV 445
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ MK+ GC P+ T+T L+ G
Sbjct: 446 FNEMKSIGCKPNICTYTALVNAFAREG 472
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD + Y+ ++ G+ AE +F ELK+ G+ P + + ++ + + G + E
Sbjct: 525 EPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEE 584
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRR 222
+ SG TP ++ AG E L+AA+ R
Sbjct: 585 VMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLLAAMER 626
>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Vitis vinifera]
Length = 708
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
RQ + + +L FN + K V + PD+ Y+ +I + KQ+ +E LF E GL P
Sbjct: 482 RQADTNRSLVFFNKMLK-VGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPTK 540
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ YT MI Y + G A++ ++ M GC P +T+ LI L
Sbjct: 541 KTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGL 585
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A ++F + + YKP++ Y+ MI K ++ AE L ++++GL P+T YT +I
Sbjct: 348 AFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLI 407
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ +VG +A E + M G +P+ T+ +I L G
Sbjct: 408 DGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGS 450
>gi|71027557|ref|XP_763422.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350375|gb|EAN31139.1| hypothetical protein TP03_0402 [Theileria parva]
Length = 596
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 59/103 (57%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
N +D A+++F +++ KP+ +Y+ +I G+NKQ+ A +F ++++G+ P+T
Sbjct: 216 NNNSVDSAMRLFEDMKERGKVKPNTIMYTTLIKGYGQNKQLDKAMRIFRLMQQDGVQPNT 275
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
Y +I +VG ++ A E M +SG P +TF+ +I+
Sbjct: 276 VTYNSVIDACARVGEMNSATRLLEEMLSSGIEPDLITFSTIIK 318
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 10/98 (10%)
Query: 140 KNKQIAMAEELFCELKKEG-LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK 198
N + A LF ++K+ G + P+T +YT +I Y Q +DKAM + M+ G P+
Sbjct: 216 NNNSVDSAMRLFEDMKERGKVKPNTIMYTTLIKGYGQNKQLDKAMRIFRLMQQDGVQPNT 275
Query: 199 LTFTILIRNLENAG---------EEELVAAVRRDCIQY 227
+T+ +I G EE L + + D I +
Sbjct: 276 VTYNSVIDACARVGEMNSATRLLEEMLSSGIEPDLITF 313
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 81/187 (43%), Gaps = 7/187 (3%)
Query: 32 SGKKIQALTVTCGLRDANKKPMWRSRVLSSEAI-----QAVHAMKLAKSSSKLEEGFQSR 86
+G + + TVT G + +N S V ++E + A S+ +L E + R
Sbjct: 174 TGGTVTSGTVTGGNQVSNPVTPSASTVTNNEIVYGCMFDAYVNNNSVDSAMRLFEDMKER 233
Query: 87 ICRLLKADLLDTLTELRRQN-ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIA 145
+ TL + QN +LD A+++F ++++ +P+ Y+ +I + ++
Sbjct: 234 GKVKPNTIMYTTLIKGYGQNKQLDKAMRIFRLMQQD-GVQPNTVTYNSVIDACARVGEMN 292
Query: 146 MAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
A L E+ G++PD ++ +I Y +DK+ + M G P + + L+
Sbjct: 293 SATRLLEEMLSSGIEPDLITFSTIIKGYCVQSDMDKSFQLLSVMYERGIMPDVILYNSLL 352
Query: 206 RNLENAG 212
+G
Sbjct: 353 EGCVKSG 359
>gi|356527777|ref|XP_003532484.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Glycine max]
Length = 583
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Query: 92 KADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELF 151
+ L++TL + +E A VFN + +E +KP L Y+ ++ L + K+ L
Sbjct: 25 RTKLMNTLIGKGKPHE---AQAVFNNLTEE-GHKPTLITYTTLVAALTRQKRFKSIPALL 80
Query: 152 CELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
++ G+ PD+ + MI + + G +D+AM+ ++ MK GC P T+ LI+ A
Sbjct: 81 SKVADNGMKPDSILLNAMINAFSESGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIA 140
Query: 212 G 212
G
Sbjct: 141 G 141
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
N +D AL + +E KPD+ +S ++ + EE+F ++ K G++PD
Sbjct: 285 NGVDEALTLM----EEFGIKPDVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGIEPDIHA 340
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
Y+ + Y++ G KA +M G P+ + FT +I AG+
Sbjct: 341 YSILAKGYVRAGQPRKAEALLTSMSKYGVQPNVVIFTTIISGWCAAGK 388
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ YS + + Q AE L + K G+ P+ ++T +I + G +D+A
Sbjct: 335 EPDIHAYSILAKGYVRAGQPRKAEALLTSMSKYGVQPNVVIFTTIISGWCAAGKMDRAFR 394
Query: 185 TYETMKASGCTPHKLTFTILI 205
E M G +P+ T+ LI
Sbjct: 395 LCEKMHEMGTSPNLKTYETLI 415
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL-KKE 157
+ ++D A+K+F + KE KP S Y+ +I G + + +L + + E
Sbjct: 99 INAFSESGKVDEAMKIFQKM-KEYGCKPTTSTYNTLIKGFGIAGRPYESMKLLEMMGQDE 157
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ P+ R Y +I + +++A M ASG P +T+ + R GE E
Sbjct: 158 NVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETE 215
>gi|302753732|ref|XP_002960290.1| hypothetical protein SELMODRAFT_73828 [Selaginella moellendorffii]
gi|300171229|gb|EFJ37829.1| hypothetical protein SELMODRAFT_73828 [Selaginella moellendorffii]
Length = 546
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPDL ++S +I + GK K + A LF +LK G+ PD +Y MI +Y + +A
Sbjct: 92 KPDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINLYGKAKFYKEAQG 151
Query: 185 TYETMKASGCTPHKLTFTILI 205
MK +G P +++TILI
Sbjct: 152 LLAEMKEAGLMPDTVSYTILI 172
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 68/127 (53%), Gaps = 4/127 (3%)
Query: 97 DTLTELRRQNEL-DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELK 155
+T+ ++ ++ EL A VF +++ + +P++ Y+ ++ + G Q A L +++
Sbjct: 240 NTMIKVYKEAELLSEAFNVFYYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQ 299
Query: 156 KEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ G++P+ Y+ +I +Y + G D+A ++T++ G ++ + +I E AG
Sbjct: 300 QRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFEMDEILYQSMIVVYERAG--- 356
Query: 216 LVAAVRR 222
LVA +R
Sbjct: 357 LVAHAKR 363
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD +Y+ MI + GK K A+ L E+K+ GL PDT YT +I Y + +A +
Sbjct: 128 PDKVIYNSMINLYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQV 187
Query: 186 YETMKASGCTPHKLTFTILI 205
+ MK G T ++I
Sbjct: 188 FLEMKTKGIQLDVTTCNMMI 207
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P+ YS +I + GK + A LF L+++G + D +Y MI VY + G++ A
Sbjct: 304 EPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFEMDEILYQSMIVVYERAGLVAHAKR 363
Query: 185 TYETMKASGCTPHKLTFTILIR 206
E +K P +IL +
Sbjct: 364 LLEELKQPDIVPRDTAISILAK 385
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 54/101 (53%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
Q++ +L + +++ ++ Y P + Y+ ++ + + +Q +AE L E+ ++ L PD
Sbjct: 2 QDDWQRSLALHDWMIEKGGYAPSIFAYNVVLKNVLRARQWELAEGLVLEMVEKDLVPDKF 61
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
++ +I Y + ++ AM + M+A G P + F+ LI
Sbjct: 62 TFSTLISGYGRANRLEDAMGWLQEMEAGGIKPDLVIFSTLI 102
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
RQ EL L V V K++ PD +S +I G+ ++ A E++ G+ PD
Sbjct: 39 RQWELAEGL-VLEMVEKDL--VPDKFTFSTLISGYGRANRLEDAMGWLQEMEAGGIKPDL 95
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+++ +I + +V KA + +KASG P K+ + +I
Sbjct: 96 VIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMI 137
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y MI + +NK+ A ++F +++ G PD+ ++ Y Q+ ++ A + Y M+
Sbjct: 411 YKSMIQLFVRNKRSKNAIDVFENMRESGFLPDSETTVVLLAAYGQLRQLEDAEKLYLDMR 470
Query: 191 ASGCTPHK 198
GCT K
Sbjct: 471 ERGCTLEK 478
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE PD Y+ +I ++++ A+++F E+K +G+ D MI VY ++ M+
Sbjct: 157 KEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYGKLEMV 216
Query: 180 DKAMETYETM-KASGCTPHKLTFTILIR 206
A E + +M K G + +T+ +I+
Sbjct: 217 RDAEELFWSMSKTLGIQQNVVTYNTMIK 244
>gi|302768008|ref|XP_002967424.1| hypothetical protein SELMODRAFT_231012 [Selaginella moellendorffii]
gi|300165415|gb|EFJ32023.1| hypothetical protein SELMODRAFT_231012 [Selaginella moellendorffii]
Length = 546
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPDL ++S +I + GK K + A LF +LK G+ PD +Y MI +Y + +A
Sbjct: 92 KPDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINLYGKAKFYKEAQG 151
Query: 185 TYETMKASGCTPHKLTFTILI 205
MK +G P +++TILI
Sbjct: 152 LLAEMKEAGLMPDTVSYTILI 172
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 68/127 (53%), Gaps = 4/127 (3%)
Query: 97 DTLTELRRQNEL-DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELK 155
+T+ ++ ++ EL A VF +++ + +P++ Y+ ++ + G Q A L +++
Sbjct: 240 NTMIKVYKEAELLSEAFNVFYYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQ 299
Query: 156 KEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ G++P+ Y+ +I +Y + G D+A ++T++ G ++ + +I E AG
Sbjct: 300 QRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFEMDEILYQSMIVVYERAG--- 356
Query: 216 LVAAVRR 222
LVA +R
Sbjct: 357 LVAHAKR 363
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD +Y+ MI + GK K A+ L E+K+ GL PDT YT +I Y + +A +
Sbjct: 128 PDKVIYNSMINLYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQV 187
Query: 186 YETMKASGCTPHKLTFTILI 205
+ MK G T ++I
Sbjct: 188 FLEMKTKGIQLDVTTCNMMI 207
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P+ YS +I + GK + A LF L+++G + D +Y MI VY + G++ A
Sbjct: 304 EPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFEMDEILYQSMIVVYERAGLVAHAKR 363
Query: 185 TYETMKASGCTPHKLTFTILIR 206
E +K P +IL +
Sbjct: 364 LLEELKQPDIVPRDTAISILAK 385
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 54/101 (53%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
Q++ +L + +++ ++ Y P + Y+ ++ + + +Q +AE L E+ ++ L PD
Sbjct: 2 QDDWQRSLALHDWMIEKGGYAPSIFAYNVVLKNVLRARQWELAEGLVLEMVEKDLVPDKF 61
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
++ +I Y + ++ AM + M+A G P + F+ LI
Sbjct: 62 TFSTLISGYGRANRLEDAMGWLQEMEAGGIKPDLVIFSTLI 102
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
RQ EL L V V K++ PD +S +I G+ ++ A E++ G+ PD
Sbjct: 39 RQWELAEGL-VLEMVEKDL--VPDKFTFSTLISGYGRANRLEDAMGWLQEMEAGGIKPDL 95
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+++ +I + +V KA + +KASG P K+ + +I
Sbjct: 96 VIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMI 137
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y MI + +NK+ A ++F +++ G PD+ ++ Y Q+ ++ A + Y M+
Sbjct: 411 YKSMIQLFMRNKRSKNAIDVFENMRESGFLPDSETTVVLLAAYGQLRQLEDAEKLYLDMR 470
Query: 191 ASGCTPHK 198
GCT K
Sbjct: 471 ERGCTLEK 478
Score = 37.4 bits (85), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE PD Y+ +I ++++ A+++F E+K +G+ D MI VY ++ M+
Sbjct: 157 KEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYGKLEMV 216
Query: 180 DKAMETYETM-KASGCTPHKLTFTILIR 206
A E + +M K G + +T+ +I+
Sbjct: 217 RDAEELFWSMSKTLGIQQNVVTYNTMIK 244
>gi|413953460|gb|AFW86109.1| hypothetical protein ZEAMMB73_051838 [Zea mays]
Length = 240
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 6/133 (4%)
Query: 80 EEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
E+GF C L+D L + +R DLA ++F + KE +Y+ MI LG
Sbjct: 39 EKGFPP--CPAAYCSLIDALGKAKR---YDLACELFQEL-KENCGSSSARVYAVMIKHLG 92
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
K ++ A +F E+ K G PD Y ++ + GMID+A+ T M+ GC P
Sbjct: 93 KAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMIDEALSTMRRMQEHGCIPDIN 152
Query: 200 TFTILIRNLENAG 212
++ I++ L G
Sbjct: 153 SYNIILNGLAKTG 165
>gi|226505250|ref|NP_001147833.1| GTP binding protein [Zea mays]
gi|195614010|gb|ACG28835.1| GTP binding protein [Zea mays]
gi|413952711|gb|AFW85360.1| GTP binding protein [Zea mays]
Length = 547
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 67/127 (52%), Gaps = 5/127 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+DTL+ + ++ A ++ ++++ + PDL Y+ ++ G K + M + ++ E+
Sbjct: 236 LIDTLS---KSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHEKDLLMVKTMYQEM 292
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
G+ PD Y +I + + G D+A++ + M+ASGC P + +LI L EE
Sbjct: 293 IDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGL--GSEE 350
Query: 215 ELVAAVR 221
L A++
Sbjct: 351 RLDEALK 357
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R ++ A K+ + +RK P+ Y ++ L K+++ A +F + +G +P
Sbjct: 383 RASKFQHAFKMVDEMRK-CKVGPNSRTYDVILHYLIKSQKFEEAYNIFQRMGIDGCEPQL 441
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL--ENAGEEELV 217
YT M+G++ G +D A++ ++ M G P F+ LI L EN EE V
Sbjct: 442 NTYTMMVGMFCSNGRVDMALKVWKQMGEKGVLPCMHMFSALINGLCFENRLEEACV 497
>gi|162462150|ref|NP_001105879.1| chloroplast RNA processing1 [Zea mays]
gi|3289002|gb|AAC25599.1| CRP1 [Zea mays]
Length = 668
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD Y+ MI GK + A + F ++++EG++PD + +I + + G D+A E
Sbjct: 401 RPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAE 460
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+E M+ S C P T+ I+I L GE+E
Sbjct: 461 LFEEMRESNCPPGTTTYNIMINLL---GEQE 488
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
D A ++F +R E P + Y+ MI +LG+ + E + E+K++GL P+ YT
Sbjct: 456 DRAAELFEEMR-ESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTT 514
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
++ VY + G +A++ E MKA G P + L+ G
Sbjct: 515 LVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRG 558
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Query: 112 LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ---IAMAEELFCELKKEGLDPDTRVYTE 168
L++ + +R E + PDL+ YS ++ L + A+ E L +L++ L+PD ++++
Sbjct: 175 LRLLSLLR-EHDFLPDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSD 233
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+I + + + D A+E + +A G TP T LI L AG
Sbjct: 234 LISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGTAG 277
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE P++ Y+ ++ + G++ + A + +K +GL P +Y ++ Y Q G+
Sbjct: 501 KEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLA 560
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRN-LENA-GEEELV 217
D A+ + MKA G L +IL+ N L NA GE+ V
Sbjct: 561 DHALNVVKAMKADG-----LEVSILVLNSLINAFGEDRRV 595
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 132 SDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA 191
+ +I G+++++ A + +++ GL PD YT ++ ++V DK YE M
Sbjct: 583 NSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMIT 642
Query: 192 SGCTPHK 198
SGC P +
Sbjct: 643 SGCAPDR 649
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 10/133 (7%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
++DT + N L A+ FN +R+E +PD+ ++ +I K + A ELF E+
Sbjct: 410 MIDTFG---KYNCLGHAMDAFNKMREE-GIEPDVVTWNTLIDAHCKGGRHDRAAELFEEM 465
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE- 213
++ P T Y MI + + + MK G P+ +T+T L+ +G
Sbjct: 466 RESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRY 525
Query: 214 EELVAAVRRDCIQ 226
+E + DCI+
Sbjct: 526 KEAI-----DCIE 533
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 117 FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176
F+ E+ KP Y+ ++ + + AE++ E+ + G+ PD Y+ ++ Y +
Sbjct: 290 FLAGEI--KPRTRAYNALLKGYVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRA 347
Query: 177 GMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLE 236
G + A + M+A G P F+ ++ + G+ + AV R+ P+R
Sbjct: 348 GRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFY 407
Query: 237 EV 238
V
Sbjct: 408 NV 409
>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 878
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 8/169 (4%)
Query: 50 KKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEE---GFQSRICRLLKADLLDTLTELRRQN 106
K M R ++ EA+Q V ++ K LE F+SR+C D L EL +
Sbjct: 112 KTNMNRHTSVALEALQQV--IQYGKDDKALENVLLNFESRLCG--PDDYTFLLRELGNRG 167
Query: 107 ELDLALKVFNF-VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
+ A++ F F VR+E L S MI LG+ ++ +A+ +F KEG
Sbjct: 168 DSAKAVRCFEFAVRRESGKNEQGKLASAMISTLGRLGKVELAKAVFDTALKEGYGKTVYA 227
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
++ +I Y + G ++A++ +++MK++G P+ +T+ +I G E
Sbjct: 228 FSALISAYGRSGYCNEAIKVFDSMKSNGLMPNLVTYNAVIDACGKGGVE 276
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+L YS +I + K A E+F E K+ GL D +Y+ +I + G+++ ++
Sbjct: 469 PNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCKNGLVESSVTL 528
Query: 186 YETMKASGCTPHKLTFTILI 205
+ M G P+ +T+ +I
Sbjct: 529 LDEMTKEGIRPNVVTYNSII 548
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+ D+ Y+ ++ GK + +F E+K+ + P+ Y+ +I VY + G+ +AME
Sbjct: 433 RKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRGRVSPNLLTYSTLIDVYSKGGLYKEAME 492
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ K +G + ++ LI L G
Sbjct: 493 VFREFKQAGLKADVVLYSALIDALCKNG 520
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 63/129 (48%), Gaps = 9/129 (6%)
Query: 95 LLDTLTELRRQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
LLD + + ++DLA ++ + K + P++ YS MI K ++ A +F E
Sbjct: 337 LLDAVC---KGGQMDLAFEIMSEMPTKNIL--PNVVTYSTMIDGYAKVGRLDDALNMFNE 391
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+K G+ D Y ++ VY ++G ++A++ + M+ +G +T+ L L G+
Sbjct: 392 MKFLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNAL---LAGYGK 448
Query: 214 EELVAAVRR 222
+ VRR
Sbjct: 449 QYRYDEVRR 457
Score = 36.6 bits (83), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/88 (20%), Positives = 37/88 (42%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD ++ ++ + + A LF + +G+D D Y ++ + G +D A E
Sbjct: 293 QPDRITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQMDLAFE 352
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
M P+ +T++ +I G
Sbjct: 353 IMSEMPTKNILPNVVTYSTMIDGYAKVG 380
>gi|414887035|tpg|DAA63049.1| TPA: crs2 associated factor1 [Zea mays]
Length = 668
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD Y+ MI GK + A + F ++++EG++PD + +I + + G D+A E
Sbjct: 401 RPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAE 460
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+E M+ S C P T+ I+I L GE+E
Sbjct: 461 LFEEMRESNCPPGTTTYNIMINLL---GEQE 488
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
D A ++F +R E P + Y+ MI +LG+ + E + E+K++GL P+ YT
Sbjct: 456 DRAAELFEEMR-ESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTT 514
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
++ VY + G +A++ E MKA G P + L+ G
Sbjct: 515 LVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRG 558
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Query: 112 LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ---IAMAEELFCELKKEGLDPDTRVYTE 168
L++ + +R E + PDL+ YS ++ L + A+ E L +L++ L+PD ++++
Sbjct: 175 LRLLSLLR-EHDFLPDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSD 233
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+I + + + D A+E + +A G TP T LI L AG
Sbjct: 234 LISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGTAG 277
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE P++ Y+ ++ + G++ + A + +K +GL P +Y ++ Y Q G+
Sbjct: 501 KEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLA 560
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRN-LENA-GEEELV 217
D A+ + MKA G L +IL+ N L NA GE+ V
Sbjct: 561 DHALNVVKAMKADG-----LEVSILVLNSLINAFGEDRRV 595
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 132 SDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA 191
+ +I G+++++ A + +++ GL PD YT ++ ++V DK YE M
Sbjct: 583 NSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMIT 642
Query: 192 SGCTPHK 198
SGC P +
Sbjct: 643 SGCAPDR 649
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 10/133 (7%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
++DT + N L A+ FN +R+E +PD+ ++ +I K + A ELF E+
Sbjct: 410 MIDTFG---KYNCLGHAMDAFNKMREE-GIEPDVVTWNTLIDAHCKGGRHDRAAELFEEM 465
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE- 213
++ P T Y MI + + + MK G P+ +T+T L+ +G
Sbjct: 466 RESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRY 525
Query: 214 EELVAAVRRDCIQ 226
+E + DCI+
Sbjct: 526 KEAI-----DCIE 533
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 117 FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176
F+ E+ KP Y+ ++ + + AE++ E+ + G+ PD Y+ ++ Y +
Sbjct: 290 FLAGEI--KPRTRAYNALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRA 347
Query: 177 GMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLE 236
G + A + M+A G P F+ ++ + G+ + AV R+ P+R
Sbjct: 348 GRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFY 407
Query: 237 EV 238
V
Sbjct: 408 NV 409
>gi|168049914|ref|XP_001777406.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671255|gb|EDQ57810.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 570
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
D A+ ++ V+K W KPD Y M+ + G+ I+ A +F E+K G+ P + VY
Sbjct: 130 DEAVALYESVKKSGW-KPDKVTYGTMVRLFGRAGYISAAVSIFDEMKGSGIQPGSVVYNI 188
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
MI + G + A++ ++ MK +G P+ +T + ++ +G+
Sbjct: 189 MISCLGRAGRMGHALKVFQEMKQAGVKPNAVTLSTVMEIYSRSGK 233
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD YS MI + GK + A L+ +KK G PD Y M+ ++ + G I A+
Sbjct: 111 PDAVTYSTMIDVYGKVGKYDEAVALYESVKKSGWKPDKVTYGTMVRLFGRAGYISAAVSI 170
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
++ MK SG P + + I+I L AG
Sbjct: 171 FDEMKGSGIQPGSVVYNIMISCLGRAG 197
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 88/199 (44%), Gaps = 14/199 (7%)
Query: 32 SGKKIQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQ--SRICR 89
+G+ AL V ++ A KP A+ M++ S K+ EG + +
Sbjct: 196 AGRMGHALKVFQEMKQAGVKP---------NAVTLSTVMEIYSRSGKVMEGLGIFHHMRQ 246
Query: 90 LLKADLLDTLTELRRQNELDLALKVFNFVRKEVWY--KPDLSLYSDMILMLGKNKQIAMA 147
L D++ ++ E L + ++R+ V Y +P+ Y +MI + KN A
Sbjct: 247 DLACDIIVYNAVIKMCREAGLVPEAEQYLREMVEYGHQPNDWTYRNMISLYAKNGMAVEA 306
Query: 148 EELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN 207
+ +F +L + G PD YT ++ Y +K E M ++ C P + + +++ N
Sbjct: 307 QRMFSQLVEAGYQPDVMSYTSLLQGYGNAKDYEKVQEILHEMVSANCAPDERLWCVIL-N 365
Query: 208 LENAGEEELVAAVRRDCIQ 226
L +A + ++ + R C++
Sbjct: 366 LLDACDTDVEFEILRSCLR 384
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
Query: 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKK 156
D + L +AL +F +++ E + ++ Y+ M+ +L + +Q +++++ ++
Sbjct: 12 DVVAILNTLKSWKVALSLFKWLQAEQNFNLNIYTYNVMLKVLRRGQQWELSQQIAEDMIN 71
Query: 157 EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE-EE 215
G+ PD Y+ +I + D AM ++ M + C P +T++ +I G+ +E
Sbjct: 72 AGIRPDNITYSTLISCANRCNYQDAAMAWFDRMHDAQCVPDAVTYSTMIDVYGKVGKYDE 131
Query: 216 LVA 218
VA
Sbjct: 132 AVA 134
>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 915
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ MI L K+K++ A +LF L+++G++P+ +YT +I Y + G +D+A
Sbjct: 495 PDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLM 554
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
E M + C P+ LTF LI L G+
Sbjct: 555 LEKMLSKNCLPNSLTFNALIHGLCADGK 582
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD Y+ I + ++ AE++ ++++ G+ PD Y+ +I Y +G + A +
Sbjct: 634 KPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFD 693
Query: 185 TYETMKASGCTPHKLTFTILIRNL-------ENAGEEELVA 218
+ M+ +GC P + TF LI++L + E EL A
Sbjct: 694 VLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCA 734
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 113 KVFNFVRK--EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
+ N V++ E KP++ Y+ +I L + A EL ++ ++GL P+ Y +I
Sbjct: 341 EALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALI 400
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
Y + GMI+ A++ E M++ +P+ T+ LI+
Sbjct: 401 NGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIK 436
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+ M+ K + A + ++ + GLDPD YT +I Y Q +D A +
Sbjct: 216 PNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKV 275
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ M GC +++ +T LI L
Sbjct: 276 FNEMPLKGCRRNEVAYTHLIHGL 298
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E PD Y+ +I+ + K + A ++F E+ +G + YT +I ID
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRID 305
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNL 208
+AM+ + MK C P T+T+LI++L
Sbjct: 306 EAMDLFVKMKDDECFPTVRTYTVLIKSL 333
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I ++ A L + GL PD YT MI + +++A +
Sbjct: 460 PDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDL 519
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+++++ G P+ + +T LI AG+
Sbjct: 520 FDSLEQKGVNPNVVMYTALIDGYCKAGK 547
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
++ +LD A KVFN + + + +++ Y+ +I L ++I A +LF ++K + P
Sbjct: 265 QRKDLDSAFKVFNEMPLKGCRRNEVA-YTHLIHGLCVARRIDEAMDLFVKMKDDECFPTV 323
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
R YT +I +A+ + M+ +G P+ T+T+LI +L
Sbjct: 324 RTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSL 368
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 44/100 (44%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
++ +P +S + +I L K+ A F ++ G PD YT I Y + G +
Sbjct: 595 KIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLL 654
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
A + M+ +G +P T++ LI+ + G+ V
Sbjct: 655 DAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDV 694
>gi|414887034|tpg|DAA63048.1| TPA: crs2 associated factor1 [Zea mays]
Length = 617
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD Y+ MI GK + A + F ++++EG++PD + +I + + G D+A E
Sbjct: 401 RPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAE 460
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+E M+ S C P T+ I+I L GE+E
Sbjct: 461 LFEEMRESNCPPGTTTYNIMINLL---GEQE 488
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
D A ++F +R E P + Y+ MI +LG+ + E + E+K++GL P+ YT
Sbjct: 456 DRAAELFEEMR-ESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTT 514
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYV 228
++ VY + G +A++ E MKA G P + L+ G +R D I Y
Sbjct: 515 LVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRG-------LRPDVITYT 567
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Query: 112 LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ---IAMAEELFCELKKEGLDPDTRVYTE 168
L++ + +R+ + PDL+ YS ++ L + A+ E L +L++ L+PD ++++
Sbjct: 175 LRLLSLLREHD-FLPDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSD 233
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+I + + + D A+E + +A G TP T LI L AG
Sbjct: 234 LISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGTAG 277
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ N L A+ FN +R+E +PD+ ++ +I K + A ELF E+++ P T
Sbjct: 416 KYNCLGHAMDAFNKMREE-GIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGT 474
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE-EELVAAVRR 222
Y MI + + + MK G P+ +T+T L+ +G +E +
Sbjct: 475 TTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAI----- 529
Query: 223 DCIQ 226
DCI+
Sbjct: 530 DCIE 533
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 117 FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176
F+ E+ KP Y+ ++ + + AE++ E+ + G+ PD Y+ ++ Y +
Sbjct: 290 FLAGEI--KPRTRAYNALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRA 347
Query: 177 GMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLE 236
G + A + M+A G P F+ ++ + G+ + AV R+ P+R
Sbjct: 348 GRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFY 407
Query: 237 EV 238
V
Sbjct: 408 NV 409
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 25/60 (41%)
Query: 139 GKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK 198
G M L + GL PD YT ++ ++V DK YE M SGC P +
Sbjct: 539 GLKPSPTMYHALVNAYAQRGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAPDR 598
>gi|357124917|ref|XP_003564143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Brachypodium distachyon]
Length = 1285
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E +KPD Y+ ++ K E + EL + G D Y MI +Y ++G +D
Sbjct: 198 EKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGITYNTMIHMYGKMGRLD 257
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNL 208
A+ Y+ M+A GCTP +T+T+LI +L
Sbjct: 258 LALGLYDEMRALGCTPDAVTYTVLIDSL 285
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 67/124 (54%), Gaps = 5/124 (4%)
Query: 89 RLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAE 148
++ K+ ++ L + ++ +K++N + KE Y P++ +Y MI +L +NK+ E
Sbjct: 691 KISKSTVILMLDAFTKAGDIFEVMKIYNGM-KEAGYLPNMHIYRSMISLLCRNKRYRDVE 749
Query: 149 ELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI--- 205
+ E+++ G +PD + ++ +Y G DK +E Y ++ +G P++ T+ LI
Sbjct: 750 LMVVEMERAGFEPDLTILNTLLLMYTGNGNFDKTVEVYHSILEAGLEPNEDTYNTLIVMY 809
Query: 206 -RNL 208
RNL
Sbjct: 810 SRNL 813
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ LDLAL +++ +R + PD Y+ +I LGK +I+ A ++ E+ GL P
Sbjct: 252 KMGRLDLALGLYDEMRA-LGCTPDAVTYTVLIDSLGKMDRISDAGKVLEEMADAGLKPTL 310
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
++ +I Y + G ++A+ T+ M ASG P +L + +++ + +G+
Sbjct: 311 VTFSALICAYAKGGRREEAVRTFSHMVASGVKPDRLAYLVMLDIIARSGD 360
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+K D Y+ MI M GK ++ +A L+ E++ G PD YT +I ++ I A
Sbjct: 236 FKKDGITYNTMIHMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAG 295
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ E M +G P +TF+ LI G E
Sbjct: 296 KVLEEMADAGLKPTLVTFSALICAYAKGGRRE 327
Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 4/129 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D+L ++ R ++ A KV + + KP L +S +I K + A F +
Sbjct: 281 LIDSLGKMDRISD---AGKVLEEM-ADAGLKPTLVTFSALICAYAKGGRREEAVRTFSHM 336
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
G+ PD Y M+ + + G + K M Y+TM G P + +++ L E
Sbjct: 337 VASGVKPDRLAYLVMLDIIARSGDMRKLMALYQTMMNDGYRPDNALYQVMLAALAKGNEY 396
Query: 215 ELVAAVRRD 223
+ + AV +D
Sbjct: 397 DEIEAVVQD 405
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 125 KPDLSLYSDMILMLGKNKQIA--MAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKA 182
+PDL ++ +I K+ +A A +L E+++ GL PD Y +I Q +D A
Sbjct: 95 EPDLVSFNTLINARAKSGCLAPGSAFDLLLEVRQVGLRPDVITYNTLISACSQGSNLDDA 154
Query: 183 METYETMKASGCTPHKLTFTILI 205
+ +E M AS C P T+ ++
Sbjct: 155 VAVFEEMMASECRPDLWTYNAMV 177
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 14/129 (10%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
DL L+V ++V +PD+ Y+ +I + + A +F E+ PD Y
Sbjct: 120 FDLLLEV-----RQVGLRPDVITYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYN 174
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE--------EELV-A 218
M+ V+ + G A + + G P +T+ L+ G+ EELV A
Sbjct: 175 AMVSVHGRCGKAQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRA 234
Query: 219 AVRRDCIQY 227
++D I Y
Sbjct: 235 GFKKDGITY 243
>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic [Vitis vinifera]
gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
Length = 1113
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
ALKV+ + E KP L YS +++ LGK + I L E++ GL P+ +T I
Sbjct: 211 ALKVYRRMVSE-GIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICI 269
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ + G ID+A + M +GC P +T+T+LI L NAG+
Sbjct: 270 RILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGK 312
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL Y+ MI LG+++++ A LF E++ G+ PD Y +I GM+++A +
Sbjct: 996 PDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKM 1055
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
YE ++ G P+ T+ LIR +G + AV +
Sbjct: 1056 YEELQLKGLEPNVFTYNALIRGHSMSGNPDRAYAVYK 1092
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+ LY+ ++ GK + A ELF + KEG+ PD + Y+ M+ VG +D A+
Sbjct: 926 PNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHY 985
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+E +K SG P + + ++I L
Sbjct: 986 FEELKLSGLDPDLVCYNLMINGL 1008
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+Q +++ A ++F + KE +PDL YS M+ L ++ A F ELK GLDPD
Sbjct: 940 KQGDVETACELFRRMVKE-GIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDL 998
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
Y MI + +++A+ ++ M+ G TP T+ LI NL AG E
Sbjct: 999 VCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVE 1050
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L R ++ AL +F+ +R PDL Y+ +IL LG + A +++ EL+ +G
Sbjct: 1005 INGLGRSQRVEEALSLFDEMRNR-GITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKG 1063
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTIL 204
L+P+ Y +I + G D+A Y+ M GC P+ TF L
Sbjct: 1064 LEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVGGCRPNTGTFAQL 1109
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 44/98 (44%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A VF + K P L Y+ +I L K + MA LF ++K G PD Y +
Sbjct: 771 AYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFL 830
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ G I + + YE M GC P+ +T I+I L
Sbjct: 831 DALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGL 868
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I L ++ A+ELF ++K PD Y ++ + G +D E
Sbjct: 295 PDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEF 354
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+ M+A G P +TFTILI L G+
Sbjct: 355 WSEMEADGYLPDVVTFTILIDALCKVGK 382
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 69/172 (40%), Gaps = 23/172 (13%)
Query: 62 EAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNE-LDLALKVFNFVRK 120
EA + MK + L + + IC LL+ + LD EL E L L + ++
Sbjct: 385 EAFGTLDVMKKQGVAPNLHT-YNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILF 443
Query: 121 EVWYK---------------------PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGL 159
+Y P++ + + L + ++ A+E F LKK GL
Sbjct: 444 IDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGL 503
Query: 160 DPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
PD Y ++ Y + G +D A++ M+ +GC P + LI L A
Sbjct: 504 APDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKA 555
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+KPD Y ++ + + +E + E++ +G PD +T +I +VG +D+A
Sbjct: 328 HKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAF 387
Query: 184 ETYETMKASGCTPHKLTFTILIRNL 208
T + MK G P+ T+ LI L
Sbjct: 388 GTLDVMKKQGVAPNLHTYNTLICGL 412
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 1/128 (0%)
Query: 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
+L L Q L+ A + FN ++K PD Y+ ++ GK ++ A +L E+++
Sbjct: 478 SLYSLAEQGRLEEAKEFFNGLKK-CGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEEN 536
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
G DP+ + +I + +D+A + ++ MK P +T+ L+ L G +
Sbjct: 537 GCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEA 596
Query: 218 AAVRRDCI 225
A+ + I
Sbjct: 597 TALFKGMI 604
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ ++ I +LG+ +I A + + G PD YT +I G ++ A E
Sbjct: 259 RPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKE 318
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
+ MKAS P ++T+ L+ + G+
Sbjct: 319 LFLKMKASSHKPDRVTYITLLDKFSDHGD 347
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L ++ + +E A + ++K+ P+L Y+ +I L + ++ A ELF +
Sbjct: 373 LIDALCKVGKVDE---AFGTLDVMKKQ-GVAPNLHTYNTLICGLLRLNRLDEALELFNSM 428
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
+ GL+ Y I Y + G KA++T+E MK +G P+ + + +L G
Sbjct: 429 ESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRL 488
Query: 215 E 215
E
Sbjct: 489 E 489
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 120 KEVW-------YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGV 172
KE W Y PD+ ++ +I L K ++ A +KK+G+ P+ Y +I
Sbjct: 352 KEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICG 411
Query: 173 YLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
L++ +D+A+E + +M++ G T+ + I +GE
Sbjct: 412 LLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGE 452
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+DTL + R +E A K+F + KE+ P + Y+ ++ LGK ++ A LF +
Sbjct: 548 LIDTLYKADRVDE---AWKMFQRM-KEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGM 603
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ P+T + ++ + G +D A++ M C P LT+ +I L
Sbjct: 604 IADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGL 657
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 84/201 (41%), Gaps = 16/201 (7%)
Query: 52 PMWRSRVLSSEAIQAVHA-MKLAKSS--SKLEEGFQSRICRLLKADLLDTLTELRRQNEL 108
P+ + +A+ A + +KL KS + E + S I LLKA LTE+
Sbjct: 757 PLVKFLCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKA----RLTEM------ 806
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
A +F + K PD+ Y+ + LGK+ +I +L+ E+ G P+T +
Sbjct: 807 --AWGLF-YKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNI 863
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYV 228
+I ++ +DKA++ Y + + +P T+ LI L G E + + Y
Sbjct: 864 VIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYG 923
Query: 229 EFPERFLEEVYQKHRKTQVDL 249
P L + Q D+
Sbjct: 924 CMPNCPLYNILMNGFGKQGDV 944
>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
Length = 802
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 69/131 (52%), Gaps = 1/131 (0%)
Query: 76 SSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMI 135
+ K+ E + C L K + + L + D+A ++ + + + PD S YS +I
Sbjct: 237 AEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDMAFQIIKVMMGK-GFVPDTSTYSKVI 295
Query: 136 LMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCT 195
L + ++ A LF E+K G++PD YT +I + + G+I++A ++ M++ GC+
Sbjct: 296 TFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCS 355
Query: 196 PHKLTFTILIR 206
+ +T+T L+
Sbjct: 356 ANVVTYTALLH 366
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ ++D A +VF + K Y P + Y+ +I + K++++ +A ++ ++ + P+
Sbjct: 491 KVGKIDNAQEVFLRMSK-CGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNV 549
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
YT MI ++G KA++ M+ GC+P+ +T+T LI L +G+ +L
Sbjct: 550 VTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDL 602
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D + + RR LDLA+KV + + E P++ Y+ MI L + + A +L +
Sbjct: 520 LIDAMFKDRR---LDLAMKVLSQMV-ESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMM 575
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+++G P+ YT +I + G +D +++ + M GC P+ +T+ +LI + AG
Sbjct: 576 EEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAG 633
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P+ +Y +I K +I A+E+F + K G P YT +I + +D AM+
Sbjct: 476 EPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMK 535
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
M S CTP+ +T+T +I L GE
Sbjct: 536 VLSQMVESSCTPNVVTYTAMIDGLCRIGE 564
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y +I L K ++ A+EL + G +P+ +Y +I + +VG ID A E
Sbjct: 442 PNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEV 501
Query: 186 YETMKASGCTPHKLTFTILI 205
+ M G P T+T LI
Sbjct: 502 FLRMSKCGYLPTVHTYTSLI 521
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 101 ELRRQNELDLALKVFN--FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
EL + L LA KV+ V K + + ++ + +GK MA ++ + +G
Sbjct: 227 ELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGK---FDMAFQIIKVMMGKG 283
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
PDT Y+++I + ++KA ++ MK+ G P T+TILI + AG
Sbjct: 284 FVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAG 337
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y ++ K KQ+ + + + KEG +P+ ++ ++ Y A +
Sbjct: 140 PNVVTYRTLLTGFLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKL 199
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEEL 216
+ M GC P + + I I ++ G EEL
Sbjct: 200 LKRMADCGCPPGYVAYNIFIGSI--CGGEEL 228
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R E ALK+ + + +E P++ Y+ +I LGK+ ++ ++ +LF ++ +G P
Sbjct: 559 LCRIGECQKALKLLSMM-EEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAP 617
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMK 190
+ Y +I G++D+A MK
Sbjct: 618 NYVTYRVLINHCCAAGLLDEAHSLLSEMK 646
>gi|242092396|ref|XP_002436688.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
gi|241914911|gb|EER88055.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
Length = 551
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 67/127 (52%), Gaps = 5/127 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+DTL+ + ++ A ++ ++++ + PDL Y+ ++ G K + M + ++ E+
Sbjct: 240 LIDTLS---KSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHEKDLLMVKTMYQEM 296
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
G+ PD Y +I + + G D+A++ + M+ASGC P + +LI L EE
Sbjct: 297 IDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGL--GSEE 354
Query: 215 ELVAAVR 221
L A++
Sbjct: 355 RLDEALK 361
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R ++ + A K+ + +R E P+ Y ++ L K+++ A +F + +G +P
Sbjct: 387 RASKFEHAFKMVDEMR-ECKIGPNSRTYDVILHYLIKSQKFEEAYNVFQRMGMDGCEPQL 445
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL--ENAGEEELV 217
YT M+G++ G +D A+ ++ M G P F+ LI L EN EE V
Sbjct: 446 NTYTMMVGMFCSNGRVDMALNVWKQMGERGVLPCMHMFSALINGLCFENRLEEACV 501
>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1043
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)
Query: 80 EEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
EEG + + + L+D L + +L AL +F + K+ PD+ YS +I LG
Sbjct: 766 EEGHEPDV--VAYTSLMDVLG---KGGKLSHALIIFRAMAKKRCV-PDVVTYSSLIDSLG 819
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
K ++ A F +G P+ VY+ +I + + GM+D+A+E +E M+ C P+ +
Sbjct: 820 KEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIV 879
Query: 200 TFTILIRNLENAG 212
T+ L+ L AG
Sbjct: 880 TYNNLLSGLAKAG 892
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 1/125 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + L+ A +VF KE PD Y+ +I LGK + MA LF E+K GL P
Sbjct: 367 LAKAGRLEEACEVF-VEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVP 425
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
+ R Y MI V + G +A + + +K G P T+ LI L G+ + V A+
Sbjct: 426 NLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAII 485
Query: 222 RDCIQ 226
++ ++
Sbjct: 486 KEMVE 490
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + +++D AL VF +++E +P L Y ++ L K+++I A ++F EL++ L P
Sbjct: 643 LCKSDDVDQALDVFGRMKEE-GMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVP 701
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
DT VY M+ ++ +D+A + ++MK P T+T L+ L +G E
Sbjct: 702 DTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLE 755
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 66/116 (56%), Gaps = 4/116 (3%)
Query: 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
+ L+D+ ++ +D AL++F +++ P++ Y++++ L K ++ +AE+L
Sbjct: 847 SSLIDSFG---KKGMVDRALELFEEMQRR-QCPPNIVTYNNLLSGLAKAGRLNVAEKLLE 902
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
E++K G PD Y +I ++GM+D+A ++ MK G P +TFT LI +L
Sbjct: 903 EMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESL 958
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + N +D A K+ + ++ + PDL Y+ ++ LGK+ ++ A +F ++ +EG +P
Sbjct: 713 LVKSNRVDEACKLVDSMKNQNIL-PDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEP 771
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
D YT ++ V + G + A+ + M C P +T++ LI +L G E
Sbjct: 772 DVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVE 825
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 1/136 (0%)
Query: 78 KLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILM 137
+L E Q R C + L+ L + L++A K+ + K V PDL Y+ +I
Sbjct: 864 ELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEK-VGCVPDLVTYNILIDG 922
Query: 138 LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH 197
+GK + AE F +K++G+ PD +T +I +V + +A E +++M+ G P
Sbjct: 923 VGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPS 982
Query: 198 KLTFTILIRNLENAGE 213
+T+ +LI L AG+
Sbjct: 983 VVTYNVLIDILGRAGK 998
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 4/140 (2%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L + +D A K FN + K + P++ Y+ ++ L K ++ A E+F E+
Sbjct: 328 LIDALV---KSGNIDEACKFFNGM-KNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEM 383
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
K+ PD Y +I + G D A ++ MK G P+ T+ I+I L AG +
Sbjct: 384 KENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQ 443
Query: 215 ELVAAVRRDCIQYVEFPERF 234
+ D + P+ F
Sbjct: 444 PEAWQLFHDLKEQGAVPDVF 463
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD + + ++ ++ A E E+ K G+DP +T +I ++ G ID+A +
Sbjct: 284 QPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACK 343
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ MK C+P+ +T+T L+ L AG E
Sbjct: 344 FFNGMKNLRCSPNVVTYTTLVNGLAKAGRLE 374
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE PD+ ++ +I LGK ++ A ELF +++EG +P Y +I + + G +
Sbjct: 940 KEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKV 999
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNL 208
+A + MK GC P +T I+ R L
Sbjct: 1000 HEAAMIFHEMKVKGCMPDGITIGIMKRIL 1028
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ +YS +I GK + A ELF E+++ P+ Y ++ + G ++ A +
Sbjct: 841 PNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKL 900
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
E M+ GC P +T+ ILI + G
Sbjct: 901 LEEMEKVGCVPDLVTYNILIDGVGKMG 927
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 12/130 (9%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + E D+A +F + K+ P+L Y+ MI +LGK + A +LF +LK++G P
Sbjct: 402 LGKAGEADMACGLFKEM-KDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVP 460
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
D Y +I V + G +DK + + M G +I NAG E +
Sbjct: 461 DVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGG-------ECIISRDSNAGHEGTIEGAD 513
Query: 222 RDCIQYVEFP 231
R VE+P
Sbjct: 514 RT----VEYP 519
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 1/114 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L + L+ A +F + +E ++PD+ Y+ ++ +LGK +++ A +F + K+
Sbjct: 745 LDGLGKSGRLEEAFNMFTKMTEE-GHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKR 803
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
PD Y+ +I + G +++A +E + GCTP+ ++ LI + G
Sbjct: 804 CVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKG 857
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 48/98 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + ++ +I L K+ I A + F +K P+ YT ++ + G +++A E
Sbjct: 320 PGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEV 379
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
+ MK + C+P + + LI L AGE ++ + ++
Sbjct: 380 FVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKE 417
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 1/115 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L+ L + ++D AL++FN + +E PD +Y+ M+ L K+ ++ A +L +K +
Sbjct: 675 LSSLVKDEKIDFALQIFNEL-QESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQN 733
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ PD YT ++ + G +++A + M G P + +T L+ L G+
Sbjct: 734 ILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGK 788
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 4/127 (3%)
Query: 86 RICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIA 145
RI L LL T N + AL++FN + K P ++Y+ ++ +L K
Sbjct: 214 RISMHLLTSLLRTFGS---TNNVSGALEIFNQM-KSFGCNPSTNMYNFVLELLVKGGFYH 269
Query: 146 MAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
A +F +L + + PD + + + + + G +D A E + M SG P TFT+LI
Sbjct: 270 SAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLI 329
Query: 206 RNLENAG 212
L +G
Sbjct: 330 DALVKSG 336
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 43/82 (52%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+S YS +I L K+ + A ++F +K+EG++P Y ++ ++ ID A++ +
Sbjct: 632 DVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIF 691
Query: 187 ETMKASGCTPHKLTFTILIRNL 208
++ S P + I++ L
Sbjct: 692 NELQESSLVPDTFVYNIMVNGL 713
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 36/159 (22%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ----IAMAEEL 150
++ L + RQ E A ++F+ + KE PD+ Y+ +I +LGK Q +A+ +E+
Sbjct: 433 MISVLGKAGRQPE---AWQLFHDL-KEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEM 488
Query: 151 F-----CELKK----------EGLDPDTR------------VYTEMIGVYLQVGMIDKAM 183
C + + EG D Y ++ ++ G +D+A+
Sbjct: 489 VEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAV 548
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGE-EELVAAVR 221
+ E MK C P +T+T L+ L AG +E V+ +R
Sbjct: 549 KLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLR 587
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ +D A+K+ ++K P + Y+ ++ LGK ++ A L E++K+G
Sbjct: 535 MSAFIHNGHVDEAVKLLEVMKKHECI-PTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQG 593
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+P Y+ ++ + + ++++ ++ M GC T++++I L
Sbjct: 594 CEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCL 643
Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
E D +++ + KE ++ + L + ++ G ++ A E+F ++K G +P T +Y
Sbjct: 197 ETDAVVQILTAMWKE-GHRISMHLLTSLLRTFGSTNNVSGALEIFNQMKSFGCNPSTNMY 255
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
++ + ++ G A+ + + P TF I + + +G
Sbjct: 256 NFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSG 301
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 45/109 (41%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
Q +L LA F + ++ Y + Y+ MI L ++ ++ + KEG
Sbjct: 158 NQKDLHLAKCFFTWAGQQDGYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISM 217
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ T ++ + + A+E + MK+ GC P + ++ L G
Sbjct: 218 HLLTSLLRTFGSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGG 266
>gi|255580475|ref|XP_002531063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529358|gb|EEF31324.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 95 LLDTLTELRR----QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEEL 150
LLDTL + R+ QN D +K+ FV PD+ Y+ ++ G+ K + +E+
Sbjct: 222 LLDTLIKSRQVLSAQNVFD-KMKIRRFV-------PDIKSYTILLEGWGQEKNLLKLDEV 273
Query: 151 FCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ E+K EG +PD Y +I Y +V D A+E + M++ C P F LI L
Sbjct: 274 YREMKDEGFEPDVVTYGILINAYCKVRKYDDAIELFREMESKNCQPSPHIFCTLINGL 331
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P ++ +I LG ++++ A E F K G P+T Y ++G Y ID A
Sbjct: 318 QPSPHIFCTLINGLGSVRRLSEALEFFRRSKASGFAPETPTYNAVVGAYCWSMRIDDAYR 377
Query: 185 TYETMKASGCTPHKLTFTILIRNLENA 211
+ M+ SG P+ T+ I++ +L A
Sbjct: 378 MVDEMRKSGVGPNSRTYDIILHHLIKA 404
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 103 RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
R N LAL F + K+ + + Y+ +I LGK KQ M L ++K++G+
Sbjct: 122 RLSNAGALALSFFKWAEKQKGFMYNTESYNALIDSLGKIKQFNMIWNLVNDMKRKGV-LT 180
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ + Y + G + +AM T+E M+ G F L+ L
Sbjct: 181 KETFALISRRYARSGKVKEAMNTFEKMEKFGLKIESTDFNRLLDTL 226
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
++ ++ L K++Q+ A+ +F ++K PD + YT ++ + Q + K E Y MK
Sbjct: 219 FNRLLDTLIKSRQVLSAQNVFDKMKIRRFVPDIKSYTILLEGWGQEKNLLKLDEVYREMK 278
Query: 191 ASGCTPHKLTFTILI 205
G P +T+ ILI
Sbjct: 279 DEGFEPDVVTYGILI 293
>gi|85000739|ref|XP_955088.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65303234|emb|CAI75612.1| hypothetical protein, conserved [Theileria annulata]
Length = 559
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 59/103 (57%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
N +D A+++F +++ KP+ +Y+ +I G+NKQ+ A +F ++++G++P+T
Sbjct: 187 NNNSVDSAMRLFEDMKERGKVKPNTIMYTTLIKGYGQNKQLDKAMRIFRLMQQDGVEPNT 246
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
Y +I +VG + A E M +SG P +TF+ +I+
Sbjct: 247 VTYNSIIDACARVGEMGSATRLLEEMLSSGIEPDLITFSTIIK 289
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 140 KNKQIAMAEELFCELKKEG-LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK 198
N + A LF ++K+ G + P+T +YT +I Y Q +DKAM + M+ G P+
Sbjct: 187 NNNSVDSAMRLFEDMKERGKVKPNTIMYTTLIKGYGQNKQLDKAMRIFRLMQQDGVEPNT 246
Query: 199 LTFTILIRNLENAGE 213
+T+ +I GE
Sbjct: 247 VTYNSIIDACARVGE 261
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 98 TLTELRRQN-ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKK 156
TL + QN +LD A+++F ++++ +P+ Y+ +I + ++ A L E+
Sbjct: 216 TLIKGYGQNKQLDKAMRIFRLMQQD-GVEPNTVTYNSIIDACARVGEMGSATRLLEEMLS 274
Query: 157 EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
G++PD ++ +I Y +DK+ + M G P + + L+ +G
Sbjct: 275 SGIEPDLITFSTIIKGYCVQSDMDKSFQLLSVMYERGIMPDVILYNSLLEGCVKSG 330
>gi|255660904|gb|ACU25621.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
Length = 484
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K++ AE+ F E+K ++P YT +I Y+ V +D A+
Sbjct: 183 PDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
E MK G P+ +T++ L+ L NAG+
Sbjct: 243 VEEMKGFGIKPNAITYSTLLPGLCNAGK 270
>gi|414585491|tpg|DAA36062.1| TPA: hypothetical protein ZEAMMB73_917988 [Zea mays]
gi|414585492|tpg|DAA36063.1| TPA: hypothetical protein ZEAMMB73_917988 [Zea mays]
Length = 787
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R +LD ++++ +R+ +P LY+ ++ ++ ++ MA +LF +++K G P
Sbjct: 346 LVRSGKLDAGMELWEEMRRG-GLRPSFGLYTMVVEANARSGRLDMAAKLFGDMEKSGFFP 404
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
Y ++ ++ G +D AM Y +M SG P TFT L+ L N +L A V
Sbjct: 405 TPATYACLVEMHASAGQVDAAMRLYHSMANSGTRPGLSTFTALLTMLANKSLLDLAAKV 463
>gi|357129239|ref|XP_003566273.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 550
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 3/147 (2%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R + D A +V ++ PD+ YS +I L + +++A A + + +EG P+
Sbjct: 147 RLQQFDAAYEVVRWMTDN-GVAPDVVTYSTLICGLCRAQRVAEALGVLDLMLEEGCHPNA 205
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
YT ++ Y GMI +A + ++M A+GC P T+ +LI L G E V + +
Sbjct: 206 HTYTPIMHAYCTTGMIHEAKKLLDSMIAAGCAPSTATYNVLIEALSKVGAFEEVDVLLEE 265
Query: 224 CIQYVEFPERFLEEVYQKH--RKTQVD 248
P+ Y R +VD
Sbjct: 266 STSKGWIPDTITYSTYMDGLCRSGRVD 292
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
D AL++ + +R + +PD + ++ + L + A + + +G+ PDT T
Sbjct: 80 DRALQLLDEMRSLLQRRPDAACFTTVAAALSSASRPGAALAVLEAMAADGVAPDTVACTV 139
Query: 169 MIGVY-LQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
++GVY ++ D A E M +G P +T++ LI L A
Sbjct: 140 LVGVYACRLQQFDAAYEVVRWMTDNGVAPDVVTYSTLICGLCRA 183
>gi|326523953|dbj|BAJ96987.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1092
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 88/184 (47%), Gaps = 19/184 (10%)
Query: 67 VHAMKLAKSSSKLEEGFQSRICRLLKADL------LDTLTELRRQNELDLALKVFNFVRK 120
++ ++A + K+ E F+S + + + D+ +DTL R N+ L F +
Sbjct: 913 LNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLND---GLSYFKQL-T 968
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
++ +PDL Y+ +I LGK+ ++ A L+ +++K+G+ P+ Y +I + G
Sbjct: 969 DMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAA 1028
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEEE---------LVAAVRRDCIQYVEFP 231
+A + YE + A G P+ T+ LIR +G E +V R + Y++ P
Sbjct: 1029 EAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRPNSSTYMQLP 1088
Query: 232 ERFL 235
+ L
Sbjct: 1089 NQML 1092
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ + ++ L K ++ MA+ +F ELK G+ PD YT MI + D+AM+
Sbjct: 449 PDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKI 508
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ M + C P L LI L AG
Sbjct: 509 FAEMIENRCAPDVLAMNSLIDMLYKAG 535
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + YS ++L GK + L E++ G+ P+ YT I V Q G +++A
Sbjct: 204 PTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRI 263
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
M+ GC P +T T+LI+ L +AG
Sbjct: 264 LRKMEEEGCKPDVVTNTVLIQILCDAG 290
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
YK Y+ +I L K+K + A L+ +L EG P Y ++ L+ G I+ A
Sbjct: 832 YKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAE 891
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
++ M GC P+ + IL+ AG+ E V
Sbjct: 892 ALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKV 925
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD Y ++ G + E++ LK +G + + YT + QVG +D+A++
Sbjct: 308 KPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALD 367
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
++ MK G P + ++ LI
Sbjct: 368 VFDEMKQKGIIPQQYSYNSLISGF 391
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ L + LD A+ ++ + E + P Y ++ L K+ I AE LF E+ + G
Sbjct: 843 ISGLVKSKMLDEAINLYYQLMSE-GFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECG 901
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+P+ +Y ++ Y G +K E +E+M G P ++T++I L
Sbjct: 902 CEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTL 951
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 50/96 (52%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ I +LG+ ++ A + ++++EG PD T +I + G + A +
Sbjct: 238 RPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKD 297
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+ MKAS P ++T+ L+ ++G+ V+ +
Sbjct: 298 VFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEI 333
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 121 EVW-------YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY 173
E+W Y ++ Y+ + L + ++ A ++F E+K++G+ P Y +I +
Sbjct: 332 EIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGF 391
Query: 174 LQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
L+ ++A+E + M G TP+ T + I +GE
Sbjct: 392 LKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGE 431
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 16/188 (8%)
Query: 36 IQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKAD- 94
IQ L L DA K W+ + + + + L K + S I LKAD
Sbjct: 283 IQILCDAGRLADA-KDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADG 341
Query: 95 ----------LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQI 144
+D L ++ R +E AL VF+ ++++ P Y+ +I K +
Sbjct: 342 YNDNVVSYTAAVDALCQVGRVDE---ALDVFDEMKQK-GIIPQQYSYNSLISGFLKADRF 397
Query: 145 AMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTIL 204
A ELF + G P+ + I + + G KA++ YE MK+ G P + +
Sbjct: 398 NRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAV 457
Query: 205 IRNLENAG 212
+ L G
Sbjct: 458 LYGLAKTG 465
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L + R NE A K+F + KE+ +P Y+ ++ LG+ ++ +L +
Sbjct: 527 LIDMLYKAGRGNE---AWKIF-YELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGM 582
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
P+ Y ++ + G ++ A++ +M +GC P ++ ++ L G
Sbjct: 583 NSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEG 640
>gi|356530296|ref|XP_003533718.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Glycine max]
Length = 830
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
YKP +Y+ M+ + GK A + E++ PD+ Y E+ Y++ G +D+ M
Sbjct: 318 YKPGTVMYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSITYNELAATYVRAGFLDEGM 377
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+TM + G P+ +T+T +I AG E+
Sbjct: 378 AVIDTMTSKGVMPNAITYTTVIDAYGKAGRED 409
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
D AL++F+ + K++ P++ Y+ ++ MLGK + ++ CE+K G P+ +
Sbjct: 409 DDALRLFSKM-KDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNT 467
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
M+ V + G + + MK G P K TF LI + G E
Sbjct: 468 MLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISSYARCGSE 513
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 13/164 (7%)
Query: 78 KLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSD---- 133
+L + F S LL+AD L L + AL +F + + + D +L D
Sbjct: 127 ELNDFFNSVKFELLEADFPSLLKALDLSGNWERALLLFEW--GWLHFGSDQNLRLDNQVV 184
Query: 134 --MILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA 191
M+ +LG+ Q ++A +LF + E D R YT ++ Y + G +A++ ++ M+
Sbjct: 185 ELMVRILGRESQHSIASKLFDLIPVEKYSLDVRAYTTILHAYARSGKYKRAIDLFDKMEG 244
Query: 192 SGCTPHKLTFTILIRNLENAGEE-----ELVAAVRRDCIQYVEF 230
G P +T+ +++ G EL+ +R +++ EF
Sbjct: 245 IGLDPTLVTYNVMLDVYGKMGRSWGRILELLDEMRSKGLEFDEF 288
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%)
Query: 132 SDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA 191
S +I G+ + A + ELK G P T +Y M+ V+ + G+ +A+ + M+
Sbjct: 291 STVISACGREGMLDEARKFLAELKLNGYKPGTVMYNSMLQVFGKAGIYTEALSILKEMED 350
Query: 192 SGCTPHKLTFTILIRNLENAG 212
+ C P +T+ L AG
Sbjct: 351 NNCPPDSITYNELAATYVRAG 371
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 45/89 (50%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
YKPDL + + M+ M +NK + A E+ + + GL P+ Y ++ +Y++ KA
Sbjct: 633 YKPDLVVINSMLSMFSRNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREDECWKAE 692
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAG 212
E + ++ S P +++ +I+ G
Sbjct: 693 EVLKGIQNSVPEPDVVSYNTVIKGFCRKG 721
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R++E A +V ++ V +PD+ Y+ +I + + A + E+ +G+ P
Sbjct: 684 REDECWKAEEVLKGIQNSV-PEPDVVSYNTVIKGFCRKGLMQEAIRVLSEMTTKGIQPTI 742
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
Y + Y + + D+A E M C P +LT+ IL+ AG+ E
Sbjct: 743 VTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSELTYKILVDGYCKAGKHE 794
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 46/98 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+ + ++ M+ + + + ++ E+K G +PD + +I Y + G + +
Sbjct: 460 PNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISSYARCGSEVDSAKM 519
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
Y M SG TP T+ L+ L + G+ + +V +D
Sbjct: 520 YGEMVKSGFTPCVTTYNALLNALAHRGDWKAAESVIQD 557
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 44/98 (44%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+ Y+ +I GK + A LF ++K G P+ Y ++ + + + ++
Sbjct: 390 PNAITYTTVIDAYGKAGREDDALRLFSKMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKV 449
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
MK +GC P++ T+ ++ G+ V V R+
Sbjct: 450 LCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLRE 487
>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
Length = 648
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LLD L + EL+ AL++F ++K + +Y+ +I + ++ A LFC L
Sbjct: 490 LLDGLCD---NGELNKALEIFEKMQKS-RMTLGIGIYNIIIHGMCNASKVDDAWSLFCSL 545
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
+G+ PD Y MIG + G + +A + MK GCTP T+ ILIR + G
Sbjct: 546 SDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIR--AHLGGS 603
Query: 215 ELVAAV 220
L+++V
Sbjct: 604 GLISSV 609
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ YS +I K K++ LF E+ +GL P+T Y ++ + Q G ++ A E
Sbjct: 411 EPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKE 470
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
++ M + G P +T+ IL+ L + GE
Sbjct: 471 LFQEMVSRGVPPSVVTYGILLDGLCDNGE 499
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ +S +I + K ++ A+EL+ E+ G+ PDT Y +I + + + +A +
Sbjct: 342 PDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQM 401
Query: 186 YETMKASGCTPHKLTFTILIRN 207
++ M + GC P +T++ILI +
Sbjct: 402 FDLMVSKGCEPDIVTYSILINS 423
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 41/88 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ +I K + A ++F + +G +PD Y+ +I Y + +D M
Sbjct: 377 PDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRL 436
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+ + + G P+ +T+ L+ +G+
Sbjct: 437 FREISSKGLIPNTITYNTLVLGFCQSGK 464
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ MI L K ++ A+ LF ++K++G PD Y +I +L + ++E
Sbjct: 551 KPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVE 610
Query: 185 TYETMKASGCTPHKLTFTILIRNLEN 210
E MK G + T ++I L +
Sbjct: 611 LIEEMKVCGFSADSSTIKMVIDMLSD 636
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+ Y+ ++L ++ ++ A+ELF E+ G+ P Y ++ G ++KA+E
Sbjct: 447 PNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEI 506
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
+E M+ S T + I+I + NA
Sbjct: 507 FEKMQKSRMTLGIGIYNIIIHGMCNA 532
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 53/112 (47%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E ++PD Y ++ L K+ A+A +LF ++++ + Y+ +I + G D
Sbjct: 232 EYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFD 291
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
A+ + M+ G +T++ LI L N G+ + A + R+ I P+
Sbjct: 292 DALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPD 343
>gi|302141714|emb|CBI18917.3| unnamed protein product [Vitis vinifera]
Length = 496
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 58/106 (54%), Gaps = 8/106 (7%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ YS +I L ++ QI A ++F E+ G DP+ + ++ V+++ G +K ++
Sbjct: 247 QPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQ 306
Query: 185 TYETMKASGCTPHKLTFTILIR------NLENAGEEELVAAVRRDC 224
Y MK GC P +T+ LI NLE A +++ +V++ C
Sbjct: 307 VYNQMKRLGCPPDAITYNFLIESHCRDDNLEEA--VKILNSVKKGC 350
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 80/162 (49%), Gaps = 15/162 (9%)
Query: 59 LSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFV 118
L++EA+ A + M E + + ++ + ++ +L++ RR E A F+ +
Sbjct: 161 LAAEAVHAFNRM----------EDYGCKPDKIAFSVVISSLSKKRRAIE---AQSFFDSL 207
Query: 119 RKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM 178
+ ++PD+ +Y+ ++ + I+ AE +F E+K G+ P+ Y+ +I + G
Sbjct: 208 KDR--FEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQ 265
Query: 179 IDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
I +A + + M GC P+ +TF L+R AG E V V
Sbjct: 266 ITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQV 307
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 112 LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIG 171
L+V+N + K + PD Y+ +I ++ + A ++ +KK G + + + + G
Sbjct: 305 LQVYNQM-KRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVKK-GCNLNASSFNPIFG 362
Query: 172 VYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
++G ++ A + MK C P+ +T+ IL+R + ++V +R++
Sbjct: 363 CISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKE 414
>gi|225459754|ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Vitis vinifera]
Length = 531
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 58/106 (54%), Gaps = 8/106 (7%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ YS +I L ++ QI A ++F E+ G DP+ + ++ V+++ G +K ++
Sbjct: 282 QPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQ 341
Query: 185 TYETMKASGCTPHKLTFTILIR------NLENAGEEELVAAVRRDC 224
Y MK GC P +T+ LI NLE A +++ +V++ C
Sbjct: 342 VYNQMKRLGCPPDAITYNFLIESHCRDDNLEEA--VKILNSVKKGC 385
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 80/162 (49%), Gaps = 15/162 (9%)
Query: 59 LSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFV 118
L++EA+ A + M E + + ++ + ++ +L++ RR E A F+ +
Sbjct: 196 LAAEAVHAFNRM----------EDYGCKPDKIAFSVVISSLSKKRRAIE---AQSFFDSL 242
Query: 119 RKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM 178
+ ++PD+ +Y+ ++ + I+ AE +F E+K G+ P+ Y+ +I + G
Sbjct: 243 KDR--FEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQ 300
Query: 179 IDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
I +A + + M GC P+ +TF L+R AG E V V
Sbjct: 301 ITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQV 342
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 111 ALKVFNFVR--KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
L FN+ +E + P+ Y +MI + GK +Q +A +L +K ++ +T
Sbjct: 129 TLAFFNWATNLEEFGHSPEP--YMEMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFTI 186
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
++ Y++ G+ +A+ + M+ GC P K+ F+++I +L
Sbjct: 187 LVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSL 226
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 112 LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIG 171
L+V+N + K + PD Y+ +I ++ + A ++ +KK G + + + + G
Sbjct: 340 LQVYNQM-KRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVKK-GCNLNASSFNPIFG 397
Query: 172 VYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
++G ++ A + MK C P+ +T+ IL+R + ++V +R++
Sbjct: 398 CISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKE 449
>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
Length = 1099
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ E+ + D ALKVFN + + Y+PD+ Y+ + + +++ ++ +EG
Sbjct: 586 IGEMLKDGAFDHALKVFNHMVS-LGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEG 644
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210
+ PD YT +I Y ++G+ +A + + M +GC P +ILI+NL +
Sbjct: 645 ILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSH 696
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL +FN + KE +P++ Y+ +I L K ++ A ++ E+ ++GL P Y +I
Sbjct: 318 ALNLFNEM-KEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALI 376
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
Y + GMID A E + M+++ C P+ T+ LI L
Sbjct: 377 DGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGL 414
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ N+L+ A ++ + + E PD YS I L K ++ A LF +K +G+ +
Sbjct: 451 KVNDLESAYRLLSLMN-ENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANE 509
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+YT +I Y +VG ID A E M C P+ T+ +LI L
Sbjct: 510 VIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGL 554
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 113 KVFNFVRKEVW--------YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
K+ N V E++ PD Y+ +IL +NK + A E+F + ++G +
Sbjct: 206 KIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEV 265
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
YT +I + G I++A++ + M C P T+T+LI L +G
Sbjct: 266 SYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSG 313
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R +D A +VF + ++ + ++S Y+++I L + +I A +LF ++ ++ P
Sbjct: 241 RNKGVDNAYEVFLIMPQKGCQRNEVS-YTNLIHGLCEAGRINEALKLFADMTEDNCCPTV 299
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL--ENAGEE 214
R YT +I G +A+ + MK GC P+ T+T+LI L EN +E
Sbjct: 300 RTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDE 352
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ ++ M+ K + AE ++ + GL PDT YT +I + + +D A E
Sbjct: 192 PNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEV 251
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ M GC +++++T LI L AG
Sbjct: 252 FLIMPQKGCQRNEVSYTNLIHGLCEAG 278
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
+L+ L E R NE ALK+F + ++ P + Y+ +I L + + A LF E
Sbjct: 269 NLIHGLCEAGRINE---ALKLFADMTEDNCC-PTVRTYTVLIYALSGSGRKVEALNLFNE 324
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+K++G +P+ YT +I + +D+A + M G P +T+ LI
Sbjct: 325 MKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALI 376
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP + Y+ +I + K+ A ++F + G PD YT + Y GM+++ +
Sbjct: 576 KPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDD 635
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
M G P +T+T+LI G
Sbjct: 636 VIAKMNEEGILPDLVTYTVLIDGYARLG 663
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+ Y+ +I L K K++ A L ++ G+ P YT +IG L+ G D A++
Sbjct: 542 PNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKV 601
Query: 186 YETMKASGCTPHKLTFTILIR 206
+ M + G P T+T +
Sbjct: 602 FNHMVSLGYQPDVCTYTAFLH 622
>gi|449441652|ref|XP_004138596.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Cucumis sativus]
gi|449522692|ref|XP_004168360.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Cucumis sativus]
Length = 496
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 7/126 (5%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL+VF +R++ +Y+P Y ++++LG++ Q A LF + +E +P +YT ++
Sbjct: 125 ALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPHRARLLFDTMVQERCEPTPELYTALL 184
Query: 171 GVYLQVGMIDKAMETYETMKA-SGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVE 229
Y + +ID A T MK C P T++ILI+ + E+V ++ Y E
Sbjct: 185 AAYCRNNLIDDAFSTLNLMKTLPRCQPDVYTYSILIKACVDDSRFEIVESL------YEE 238
Query: 230 FPERFL 235
ER +
Sbjct: 239 MAERLI 244
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 47/123 (38%), Gaps = 35/123 (28%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDK--- 181
+PD+ + ++ + G I M E + + + G++P+TR + +IG Y + M DK
Sbjct: 281 RPDVWTMNIILSVFGNKGHIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSS 340
Query: 182 AME--------------------------------TYETMKASGCTPHKLTFTILIRNLE 209
ME T+E M+A G TF LI
Sbjct: 341 VMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYA 400
Query: 210 NAG 212
NAG
Sbjct: 401 NAG 403
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R N +D A N ++ +PD+ YS +I + + + E L+ E+ + + P+T
Sbjct: 189 RNNLIDDAFSTLNLMKTLPRCQPDVYTYSILIKACVDDSRFEIVESLYEEMAERLITPNT 248
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETM-KASGCTPHKLTFTILIRNLENAGEEELV 217
++ Y ++G D+ + M +++ C P T I++ N G E++
Sbjct: 249 VTQNIVLSGYGKIGKYDQMEKVLIGMLESTTCRPDVWTMNIILSVFGNKGHIEMM 303
>gi|242050034|ref|XP_002462761.1| hypothetical protein SORBIDRAFT_02g031520 [Sorghum bicolor]
gi|241926138|gb|EER99282.1| hypothetical protein SORBIDRAFT_02g031520 [Sorghum bicolor]
Length = 535
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PD+ LY+ ++ + Q+ AE +F E+++ G+ P+ YT +I + G + +A
Sbjct: 236 FTPDVVLYTAVVHAWCRAGQLDEAERVFAEMQQSGIMPNVYTYTAVIDAMYRAGQVPRAQ 295
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
E M SGC P+ TF ++R AG E V V
Sbjct: 296 ELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQV 332
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R +LD A +VF +++ P++ Y+ +I + + Q+ A+EL C++ G P+T
Sbjct: 252 RAGQLDEAERVFAEMQQS-GIMPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNT 310
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
+ ++ +++ G ++ ++ + M C P +T+ LI G+ L AA++
Sbjct: 311 ATFNAIMRAHVKAGRSEQVLQVHNQMHQLRCEPDIITYNFLIETHCGKGQGNLDAALK 368
>gi|255539453|ref|XP_002510791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549906|gb|EEF51393.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 475
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L + N+ ALK+ N + KE+ + P + ++ +I L + + F E+ K G
Sbjct: 301 LHVLGKGNKPIAALKLLNHM-KEIGFDPSILHFTTLIDGLSRAGNLDACNYFFDEMIKNG 359
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
PD YT MI Y+ G ++KA E ++ M A G P+ T+ +IR L AG+ E
Sbjct: 360 FVPDVVCYTVMITGYIVAGELEKAREIFDEMIARGQLPNVFTYNSMIRGLCMAGKFE 416
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 51/111 (45%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PD Y+ ++ +LGK + A +L +K+ G DP +T +I + G +D
Sbjct: 290 FSPDFHTYNILLHVLGKGNKPIAALKLLNHMKEIGFDPSILHFTTLIDGLSRAGNLDACN 349
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERF 234
++ M +G P + +T++I AGE E + + I + P F
Sbjct: 350 YFFDEMIKNGFVPDVVCYTVMITGYIVAGELEKAREIFDEMIARGQLPNVF 400
>gi|326510087|dbj|BAJ87260.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326520816|dbj|BAJ92771.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1092
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 88/184 (47%), Gaps = 19/184 (10%)
Query: 67 VHAMKLAKSSSKLEEGFQSRICRLLKADL------LDTLTELRRQNELDLALKVFNFVRK 120
++ ++A + K+ E F+S + + + D+ +DTL R N+ L F +
Sbjct: 913 LNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLND---GLSYFKQL-T 968
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
++ +PDL Y+ +I LGK+ ++ A L+ +++K+G+ P+ Y +I + G
Sbjct: 969 DMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAA 1028
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEEE---------LVAAVRRDCIQYVEFP 231
+A + YE + A G P+ T+ LIR +G E +V R + Y++ P
Sbjct: 1029 EAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRPNSSTYMQLP 1088
Query: 232 ERFL 235
+ L
Sbjct: 1089 NQML 1092
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ + ++ L K ++ MA+ +F ELK G+ PD YT MI + D+AM+
Sbjct: 449 PDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKI 508
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ M + C P L LI L AG
Sbjct: 509 FAEMIENRCAPDVLAMNSLIDMLYKAG 535
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + YS ++L GK + L E++ G+ P+ YT I V Q G +++A
Sbjct: 204 PTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRI 263
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
M+ GC P +T T+LI+ L +AG
Sbjct: 264 LRKMEEEGCKPDVVTNTVLIQILCDAG 290
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
YK Y+ +I L K+K + A L+ +L EG P Y ++ L+ G I+ A
Sbjct: 832 YKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAE 891
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
++ M GC P+ + IL+ AG+ E V
Sbjct: 892 ALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKV 925
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD Y ++ G + E++ LK +G + + YT + QVG +D+A++
Sbjct: 308 KPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALD 367
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
++ MK G P + ++ LI
Sbjct: 368 VFDEMKQKGIIPQQYSYNSLISGF 391
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ L + LD A+ ++ + E + P Y ++ L K+ I AE LF E+ + G
Sbjct: 843 ISGLVKSKMLDEAINLYYQLMSE-GFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECG 901
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+P+ +Y ++ Y G +K E +E+M G P ++T++I L
Sbjct: 902 CEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTL 951
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 50/96 (52%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ I +LG+ ++ A + ++++EG PD T +I + G + A +
Sbjct: 238 RPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKD 297
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+ MKAS P ++T+ L+ ++G+ V+ +
Sbjct: 298 VFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEI 333
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 121 EVW-------YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY 173
E+W Y ++ Y+ + L + ++ A ++F E+K++G+ P Y +I +
Sbjct: 332 EIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGF 391
Query: 174 LQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
L+ ++A+E + M G TP+ T + I +GE
Sbjct: 392 LKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGE 431
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 16/188 (8%)
Query: 36 IQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKAD- 94
IQ L L DA K W+ + + + + L K + S I LKAD
Sbjct: 283 IQILCDAGRLADA-KDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADG 341
Query: 95 ----------LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQI 144
+D L ++ R +E AL VF+ ++++ P Y+ +I K +
Sbjct: 342 YNDNVVSYTAAVDALCQVGRVDE---ALDVFDEMKQK-GIIPQQYSYNSLISGFLKADRF 397
Query: 145 AMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTIL 204
A ELF + G P+ + I + + G KA++ YE MK+ G P + +
Sbjct: 398 NRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAV 457
Query: 205 IRNLENAG 212
+ L G
Sbjct: 458 LYGLAKTG 465
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L + R NE A K+F + KE+ +P Y+ ++ LG+ ++ +L +
Sbjct: 527 LIDMLYKAGRGNE---AWKIF-YELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGM 582
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
P+ Y ++ + G ++ A++ +M +GC P ++ ++ L
Sbjct: 583 NSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGL 636
>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
Length = 588
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A+K+FN + K D+ + +I L K ++ A ELF +L +EG+ PD Y+ MI
Sbjct: 431 AMKLFNELESYN-MKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMI 489
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEF 230
+ + G +DKA ++ M+ +GC+P +T++IL+R + + E V + I+ +
Sbjct: 490 HGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLHRMIEKDVW 549
Query: 231 PE 232
P+
Sbjct: 550 PD 551
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 10/127 (7%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L++ L + R NE A+ +R+ Y PD+ ++ +I L +I A +LF +
Sbjct: 132 LINCLCNVNRINEGLAAMA--GIMRRG--YIPDVVTFTTLIKGLCVEHRIIEATKLFMRM 187
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM------KASGCTPHKLTFTILIRNL 208
+K G P+ Y +I +G I+ A++ ++ M C P+ ++++I+I L
Sbjct: 188 QKLGCTPNVVTYGTLIKGLCALGNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGL 247
Query: 209 ENAGEEE 215
G E
Sbjct: 248 CKVGNWE 254
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+L Y+ +I + A+ELF + +G +PD Y +I Y + +++AM+
Sbjct: 305 PNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKL 364
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+ M G P T +L++ L AG+
Sbjct: 365 FNEMLHVGMWPDVKTSGVLLKALFLAGK 392
>gi|297811525|ref|XP_002873646.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319483|gb|EFH49905.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 634
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Query: 101 ELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD 160
L R ++ D +K + + + ++ DL YS MI L K ++ E+KK+GLD
Sbjct: 371 NLCRHDKSDHLIKAYELLSSKGYFS-DLESYSLMISFLCKAGRVREGYTALHEMKKKGLD 429
Query: 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
PD +Y +I + MI A + ++ M GC + T+ +LIR L GE E
Sbjct: 430 PDVSLYNALIDACCRAEMIRPAKKLWDEMFVEGCKMNLTTYNVLIRKLSEEGEAE 484
>gi|242060656|ref|XP_002451617.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
gi|241931448|gb|EES04593.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
Length = 593
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
+LKVFN + K + KP++ Y+ ++ + AEE+F E+++ G +PD Y ++
Sbjct: 289 SLKVFNEM-KTIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALM 347
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
Y + G+ A E + M+ GC P + ++ IL+ AG
Sbjct: 348 EAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAYGRAG 389
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A++V+ ++KE + + Y+ MI + GK KQ + ++F E+K G P+ YT ++
Sbjct: 254 AVEVYQRMKKER-CRTNTETYTLMINVYGKAKQPMSSLKVFNEMKTIGCKPNICTYTALV 312
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ + G+ +KA E +E M+ +G P + L+ AG
Sbjct: 313 NAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAG 354
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 30/147 (20%), Positives = 60/147 (40%), Gaps = 35/147 (23%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELF-- 151
D+++ +LR + + + V ++ ++PD+ Y+ +I G+ +Q+ AE ++
Sbjct: 131 DIVNVAVQLRLNRQWEPIITVCEWILYRSSFRPDIICYNLLIDAYGQKRQLNKAESIYMA 190
Query: 152 ---------------------------------CELKKEGLDPDTRVYTEMIGVYLQVGM 178
E++K GL P VY + L+
Sbjct: 191 LLEAHCVPTEDTYALLLRAYCNSGQLHRAEGVISEMQKNGLPPTATVYNAYLDGLLKARC 250
Query: 179 IDKAMETYETMKASGCTPHKLTFTILI 205
+KA+E Y+ MK C + T+T++I
Sbjct: 251 SEKAVEVYQRMKKERCRTNTETYTLMI 277
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P ++Y+ + L K + A E++ +KKE +T YT MI VY + +++
Sbjct: 233 PTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVYGKAKQPMSSLKV 292
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ MK GC P+ T+T L+ G
Sbjct: 293 FNEMKTIGCKPNICTYTALVNAFAREG 319
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD S Y+ ++ + G+ + E F L GL D +T IG Y + + +E
Sbjct: 485 PDTSTYNVLVNVYGRAGYLDRMEAAFRALAARGLAADVVTWTSRIGAYARKKEYGRCLEI 544
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
+E M +GC P T +L+ + + E V A+ R
Sbjct: 545 FEEMVDAGCYPDAGTAKVLLAACSDERQVEQVTAIVR 581
Score = 37.0 bits (84), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD + Y+ ++ G+ AE F ELK++G+ P + + ++ + + G + + E
Sbjct: 372 EPDRASYNILVDAYGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHAKSGNVARCEE 431
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRR 222
+ SG P ++ AG E L+ A+ R
Sbjct: 432 VMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLLGAMER 473
>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g22470, mitochondrial; Flags: Precursor
gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 619
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LLD L + EL+ AL++F ++K + +Y+ +I + ++ A LFC L
Sbjct: 461 LLDGLCD---NGELNKALEIFEKMQKS-RMTLGIGIYNIIIHGMCNASKVDDAWSLFCSL 516
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
+G+ PD Y MIG + G + +A + MK GCTP T+ ILIR + G
Sbjct: 517 SDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIR--AHLGGS 574
Query: 215 ELVAAV 220
L+++V
Sbjct: 575 GLISSV 580
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ YS +I K K++ LF E+ +GL P+T Y ++ + Q G ++ A E
Sbjct: 382 EPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKE 441
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
++ M + G P +T+ IL+ L + GE
Sbjct: 442 LFQEMVSRGVPPSVVTYGILLDGLCDNGE 470
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ +S +I + K ++ A+EL+ E+ G+ PDT Y +I + + + +A +
Sbjct: 313 PDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQM 372
Query: 186 YETMKASGCTPHKLTFTILIRN 207
++ M + GC P +T++ILI +
Sbjct: 373 FDLMVSKGCEPDIVTYSILINS 394
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 41/88 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ +I K + A ++F + +G +PD Y+ +I Y + +D M
Sbjct: 348 PDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRL 407
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+ + + G P+ +T+ L+ +G+
Sbjct: 408 FREISSKGLIPNTITYNTLVLGFCQSGK 435
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ MI L K ++ A+ LF ++K++G PD Y +I +L + ++E
Sbjct: 522 KPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVE 581
Query: 185 TYETMKASGCTPHKLTFTILIRNLEN 210
E MK G + T ++I L +
Sbjct: 582 LIEEMKVCGFSADSSTIKMVIDMLSD 607
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+ Y+ ++L ++ ++ A+ELF E+ G+ P Y ++ G ++KA+E
Sbjct: 418 PNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEI 477
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
+E M+ S T + I+I + NA
Sbjct: 478 FEKMQKSRMTLGIGIYNIIIHGMCNA 503
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 53/112 (47%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E ++PD Y ++ L K+ A+A +LF ++++ + Y+ +I + G D
Sbjct: 203 EYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFD 262
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
A+ + M+ G +T++ LI L N G+ + A + R+ I P+
Sbjct: 263 DALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPD 314
>gi|255660876|gb|ACU25607.1| pentatricopeptide repeat-containing protein [Verbena hastata]
Length = 484
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K++ AE+ F E+K ++P YT +I Y+ V +D A+
Sbjct: 183 PDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK SG P+ +T++ L+ L NA
Sbjct: 243 VEEMKGSGIKPNAITYSTLLPGLCNA 268
>gi|225440005|ref|XP_002276355.1| PREDICTED: pentatricopeptide repeat-containing protein At2g37230
[Vitis vinifera]
Length = 763
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE PD+ Y+ MI + K++ AE+ F E+K ++P YT MI Y+ VG +
Sbjct: 284 KERRISPDVVTYNTMINGYYRIKKMEEAEKFFVEMKGRNIEPTVISYTTMIKGYVSVGRV 343
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNL 208
D + +E MK+ G P+ +T++ L+ L
Sbjct: 344 DDGLRLFEEMKSFGIKPNAVTYSTLLPGL 372
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+ +A + FN + E P Y+ MI + ++ A F E+K+ + PD
Sbjct: 234 RRGRYMMAKRYFNAMLNE-GVMPTCHTYNIMIWGFFLSLKVETANRFFEEMKERRISPDV 292
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
Y MI Y ++ +++A + + MK P +++T +I+ + G
Sbjct: 293 VTYNTMINGYYRIKKMEEAEKFFVEMKGRNIEPTVISYTTMIKGYVSVG 341
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 48/85 (56%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
D AL+ F +V + ++ D + +I +LG+ ++ A + ++ K+G++ D ++
Sbjct: 133 DHALQFFRWVERAGLFRHDRDTHLKIIEILGRASKLNHARCILLDMPKKGVEWDEDLFVL 192
Query: 169 MIGVYLQVGMIDKAMETYETMKASG 193
+I Y + G++ ++++ ++ MK G
Sbjct: 193 LIDSYGKAGIVQESVKVFQKMKELG 217
>gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa]
gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 82/162 (50%), Gaps = 15/162 (9%)
Query: 59 LSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFV 118
L++EAI A + M E + + ++ + L+ L RR ++ A + F+ +
Sbjct: 144 LAAEAIHAFNRM----------EDYNCKPDKIAFSILISILCRERRASQ---AQEFFDSL 190
Query: 119 RKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM 178
+ + ++PD+ +Y++++ + I+ AE +F E+K G+ P+ Y+ +I + G
Sbjct: 191 KDK--FEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQ 248
Query: 179 IDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
I +A + + M +GC P+ +T+ L+R AG E V V
Sbjct: 249 ITRAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQV 290
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ YS +I L + QI A ++F E+ G P++ Y ++ ++++ G +K ++
Sbjct: 230 KPNVYTYSIVIDSLCRCGQITRAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQ 289
Query: 185 TYETMKASGCTPHKLTFTILI------RNLENA 211
Y MK GC P +T+ LI NLE+A
Sbjct: 290 VYNQMKRLGCEPDTVTYNFLIETHCKDENLEDA 322
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 43/94 (45%)
Query: 112 LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIG 171
L FN+ + ++ Y++M+ G+ +A +K +D + ++
Sbjct: 78 LAFFNWASNQDGFRKSPEAYNEMVDFSGQVMMFDVAWYFIDLMKARNVDVTVETFLILMR 137
Query: 172 VYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y++ G+ +A+ + M+ C P K+ F+ILI
Sbjct: 138 RYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILI 171
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Query: 112 LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIG 171
L+V+N + K + +PD Y+ +I K++ + A ++ + K+G P+ + + G
Sbjct: 288 LQVYNQM-KRLGCEPDTVTYNFLIETHCKDENLEDAIKVIGLMAKKGCAPNASTFNTLFG 346
Query: 172 VYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
++G ++ A Y+ MK C + +T+ L++ + ++V
Sbjct: 347 CIAKLGDVNAAHRMYKKMKELNCEANTVTYNTLMKMFVASKSTDMV 392
Score = 37.0 bits (84), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 43/89 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P+ Y+ ++ + K + +++ ++K+ G +PDT Y +I + + ++ A++
Sbjct: 265 QPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLIETHCKDENLEDAIK 324
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
M GC P+ TF L + G+
Sbjct: 325 VIGLMAKKGCAPNASTFNTLFGCIAKLGD 353
>gi|58013026|gb|AAW62966.1| chloroplast embryo-defective 1270 [Arabidopsis thaliana]
Length = 1429
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 64/135 (47%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+Q +LDLAL+++ ++ PD Y+ +I LGK + A L E+ G+ P
Sbjct: 414 KQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTL 473
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
+ Y+ +I Y + G ++A +T+ M SG P L +++++ L E + RD
Sbjct: 474 QTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRD 533
Query: 224 CIQYVEFPERFLEEV 238
I P L E+
Sbjct: 534 MISDGHTPSYTLYEL 548
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL+VF ++ W+ P+ + + ++ +LG+ Q ++A E+F + D +VY M+
Sbjct: 174 ALEVFEWLNLRHWHSPNARMVAAILGVLGRWNQESLAVEIFTRAEPTVGD-RVQVYNAMM 232
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
GVY + G KA E + M+ GC P ++F LI
Sbjct: 233 GVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLI 267
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 1/125 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L+ R + LD A+KVF + +PDL Y+ MI + G+ A AE LF EL+ +G
Sbjct: 304 LSACSRDSNLDGAVKVFEDMEAHR-CQPDLWTYNAMISVYGRCGLAAEAERLFMELELKG 362
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
PD Y ++ + + +K E Y+ M+ G ++T+ +I G+ +L
Sbjct: 363 FFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLAL 422
Query: 219 AVRRD 223
+ +D
Sbjct: 423 QLYKD 427
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM 189
+Y+D+I GK K AE + L++ G PD + + ++ Y Q G ++A + TM
Sbjct: 754 MYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTM 813
Query: 190 KASGCTPHKLTFTILIRNLENAGE-EELVAAV 220
G +P + IL+ L G EEL V
Sbjct: 814 MRDGPSPTVESINILLHALCVDGRLEELYVVV 845
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P L Y +I GK K + AE+LF EL +GL D Y M+ + G KA +
Sbjct: 995 PKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKL 1054
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRRDCIQYVEFPERFLEEVYQK 241
+ MK +G P T +L+ + ++G E++++ ++ ++ P + + Y +
Sbjct: 1055 LQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLR 1114
Query: 242 HR 243
+
Sbjct: 1115 SK 1116
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
+V KP L YS +I K + AE+ F + + G PD Y+ M+ V L+
Sbjct: 466 DVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETR 525
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
KA Y M + G TP + ++I L + + RD
Sbjct: 526 KAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRD 568
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L R N+ LA+++F R E + +Y+ M+ + ++ + + A+EL +++ G
Sbjct: 198 LGVLGRWNQESLAVEIF--TRAEPTVGDRVQVYNAMMGVYSRSGKFSKAQELVDAMRQRG 255
Query: 159 LDPDTRVYTEMIGVYLQVGMI--DKAMETYETMKASGCTPHKLTFTILI 205
PD + +I L+ G + + A+E + ++ SG P +T+ L+
Sbjct: 256 CVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLL 304
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
+LA+++ + VR +PD Y+ ++ ++ + A ++F +++ PD Y
Sbjct: 279 NLAVELLDMVRNS-GLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNA 337
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI------RNLENAGE 213
MI VY + G+ +A + ++ G P +T+ L+ RN E E
Sbjct: 338 MISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKE 388
>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
Length = 790
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R LD A ++ + + KE PD Y I L K+ ++ A LF L +EG+ +
Sbjct: 339 RAGHLDSAYRLLSLM-KERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANV 397
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+Y+ +I Y +VG +D+A +E M + C+P+ TF LI L +AG
Sbjct: 398 IMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGN 447
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP Y+ I + ++ AE++ ++K+EG+ PD YT +I Y ++G+ A +
Sbjct: 499 KPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFD 558
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
++M + C P TF LI+ L
Sbjct: 559 VLKSMFDADCEPSHHTFLSLIKQL 582
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 67/166 (40%), Gaps = 41/166 (24%)
Query: 83 FQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRK---------EVWYKPDLSLYSD 133
F S ICR + D + L+ L+ NEL L F V + E + D+ ++
Sbjct: 139 FVSDICRKMSKDDITKLS-LKCYNELLTLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNL 197
Query: 134 MILMLGKNKQIAMAEELFCELKKEGLDPDT--------------------RVYTEM---- 169
MI + K + A++ C++ + GL PD RV+ EM
Sbjct: 198 MINVYCKMGFVKEAKQFMCKMIQAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEMPNRN 257
Query: 170 -------IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
I + G ID+A+ + MK C P+ T+T LI+ L
Sbjct: 258 EVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGL 303
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 100 TELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGL 159
+ + + E D+ +++F + K PD Y +I + K + + +A +L +++KEG+
Sbjct: 609 SNMWKMMEFDIVIELFEEMEKH-GCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGI 667
Query: 160 DPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
P V+ +I ++ +A E M SG +P LI L GE E
Sbjct: 668 SPSEMVFNAVISCCCKLQKYGEAANIVEDMICSGHSPQLEHCKTLICGLYEEGETE 723
Score = 36.6 bits (83), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL +F+ + K + KP + ++ +I + K A + ++ G P R Y I
Sbjct: 451 ALSLFDQMVK-MGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFI 509
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
VY G + +A + MK G P T+T LI+
Sbjct: 510 EVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIK 545
>gi|224111048|ref|XP_002315730.1| predicted protein [Populus trichocarpa]
gi|222864770|gb|EEF01901.1| predicted protein [Populus trichocarpa]
Length = 760
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI ++K++ AE+LF E+K + + P YT MI Y V I+ +
Sbjct: 287 PDVVTYNTMINGYYRHKRMEEAEKLFAEMKAKDIAPTVISYTTMIKGYFAVDRINDGLRL 346
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
E MK+ G P+ +T+T L+ +L +AG+
Sbjct: 347 LEEMKSVGIKPNNVTYTTLLPDLCDAGK 374
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 41/86 (47%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE+ + + Y+ + ++ + + MA+ F ++ EG+ P Y +I + +
Sbjct: 211 KELGVERSVKSYNALFKVIVRKGRYMMAKRFFNKMLDEGIGPTRHTYNVLIWGFFLSMRL 270
Query: 180 DKAMETYETMKASGCTPHKLTFTILI 205
A+ YE MK G +P +T+ +I
Sbjct: 271 RTAVRFYEDMKVRGISPDVVTYNTMI 296
>gi|334185431|ref|NP_188439.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|322510063|sp|Q5G1S8.2|PP241_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g18110, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 1270; Flags: Precursor
gi|9294066|dbj|BAB02023.1| unnamed protein product [Arabidopsis thaliana]
gi|332642528|gb|AEE76049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1440
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 64/135 (47%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+Q +LDLAL+++ ++ PD Y+ +I LGK + A L E+ G+ P
Sbjct: 414 KQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTL 473
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
+ Y+ +I Y + G ++A +T+ M SG P L +++++ L E + RD
Sbjct: 474 QTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRD 533
Query: 224 CIQYVEFPERFLEEV 238
I P L E+
Sbjct: 534 MISDGHTPSYTLYEL 548
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL+VF ++ W+ P+ + + ++ +LG+ Q ++A E+F + D +VY M+
Sbjct: 174 ALEVFEWLNLRHWHSPNARMVAAILGVLGRWNQESLAVEIFTRAEPTVGD-RVQVYNAMM 232
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
GVY + G KA E + M+ GC P ++F LI
Sbjct: 233 GVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLI 267
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 1/125 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L+ R + LD A+KVF + +PDL Y+ MI + G+ A AE LF EL+ +G
Sbjct: 304 LSACSRDSNLDGAVKVFEDMEAHR-CQPDLWTYNAMISVYGRCGLAAEAERLFMELELKG 362
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
PD Y ++ + + +K E Y+ M+ G ++T+ +I G+ +L
Sbjct: 363 FFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLAL 422
Query: 219 AVRRD 223
+ +D
Sbjct: 423 QLYKD 427
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM 189
+Y+D+I GK K AE + L++ G PD + + ++ Y Q G ++A + TM
Sbjct: 754 MYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTM 813
Query: 190 KASGCTPHKLTFTILIRNLENAGE-EELVAAV 220
G +P + IL+ L G EEL V
Sbjct: 814 MRDGPSPTVESINILLHALCVDGRLEELYVVV 845
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P L Y +I GK K + AE+LF EL +GL D Y M+ + G KA +
Sbjct: 995 PKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKL 1054
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRRDCIQYVEFPERFLEEVYQK 241
+ MK +G P T +L+ + ++G E++++ ++ ++ P + + Y +
Sbjct: 1055 LQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLR 1114
Query: 242 HR 243
+
Sbjct: 1115 SK 1116
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
+V KP L YS +I K + AE+ F + + G PD Y+ M+ V L+
Sbjct: 466 DVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETR 525
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
KA Y M + G TP + ++I L + + RD
Sbjct: 526 KAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRD 568
Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L R N+ LA+++F R E + +Y+ M+ + ++ + + A+EL +++ G
Sbjct: 198 LGVLGRWNQESLAVEIF--TRAEPTVGDRVQVYNAMMGVYSRSGKFSKAQELVDAMRQRG 255
Query: 159 LDPDTRVYTEMIGVYLQVGMI--DKAMETYETMKASGCTPHKLTFTILI 205
PD + +I L+ G + + A+E + ++ SG P +T+ L+
Sbjct: 256 CVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLL 304
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
+LA+++ + VR +PD Y+ ++ ++ + A ++F +++ PD Y
Sbjct: 279 NLAVELLDMVRNSG-LRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNA 337
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI------RNLENAGE 213
MI VY + G+ +A + ++ G P +T+ L+ RN E E
Sbjct: 338 MISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKE 388
>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1246
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 113 KVFNFVR--KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
K+ N + K + +P++ Y+ I LG+ ++I A +F E+ EG PD YT +I
Sbjct: 253 KIMNLLEEMKSIGLRPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLI 312
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
G +DKA E Y M+AS +P ++T+ L+ G+ E V
Sbjct: 313 DALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETV 359
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 22/152 (14%)
Query: 83 FQSRICRLLKADLLDTLTELRRQNE-LDLALKVFNFVRKEVWYK---------------- 125
+ + IC LLKA LD EL E L + F++V +Y
Sbjct: 413 YNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMK 472
Query: 126 -----PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
P ++ + + L + +I+ AE++F +L K GL PD+ Y ++ Y + G ID
Sbjct: 473 KRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQID 532
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAG 212
KA + M + GC P + LI L AG
Sbjct: 533 KATQLLSEMISKGCEPDVMIINSLINTLYKAG 564
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+ +Y+ +I GK+ +I A ELF ++ KEG+ PD + YT ++ G ID+A++
Sbjct: 934 PNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQY 993
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+E +K +G P +++ +I L
Sbjct: 994 FEELKLTGLDPDTVSYNFIINGL 1016
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 1/113 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ E+D A ++F + KE +PDL Y+ ++ L +I A + F ELK GLDPDT
Sbjct: 948 KSGEIDFACELFKKMVKE-GIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDT 1006
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
Y +I + +D+A+ + MK G +P T+ LI +L AG+ ++
Sbjct: 1007 VSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDV 1059
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L + LD AL +F+ ++ PDL Y+ +IL LG ++ +A +++ EL+ G
Sbjct: 1013 INGLGKSRRLDEALSLFSEMKNR-GISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVG 1071
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
L+P Y +I + G D+A ++ M GC+P+ TF L AG
Sbjct: 1072 LEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQLPNKYPRAG 1125
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ +I LGK++++ A LF E+K G+ PD Y +I G +D A++
Sbjct: 1004 PDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKM 1063
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
YE ++ G P T+ LIR +G ++ +V
Sbjct: 1064 YEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSV 1098
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 15/152 (9%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
ALKV+ + E KP + YS +++ LG+ L E+K GL P+ YT I
Sbjct: 219 ALKVYKRMISE-GMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICI 277
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRR---- 222
+ ID A ++ M GC P +T+T+LI L AG+ +EL +R
Sbjct: 278 RALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHS 337
Query: 223 -DCIQYVEFPERF-----LEEVYQKHRKTQVD 248
D + Y+ ++F LE V + + +VD
Sbjct: 338 PDRVTYITLMDKFGKVGDLETVKRFWNEMEVD 369
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L + +D A K+F + K + P + Y+ ++ LGK +I A ELF + + G
Sbjct: 557 INTLYKAGRVDAAWKMFGRL-KNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESG 615
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
P+T + ++ + +D A++ + M C P LT+ +I L G
Sbjct: 616 CPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREG 669
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 103 RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
+R+ LD A VF+ K + P L Y+ ++ L + A ELF ++K G P+
Sbjct: 772 KRKKALD-AQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPN 830
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
Y ++ + + I+K + Y M++ GC P+ +T I+I L
Sbjct: 831 NFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISAL 876
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P+ ++ +I L K+ + A +L+ EL P Y +I L+ G ++AM+
Sbjct: 863 EPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMK 922
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
+E M GC P+ + + ILI +GE
Sbjct: 923 IFEEMLDYGCGPNSVIYNILINGFGKSGE 951
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 96 LDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELK 155
L TL E R +E A +FN + K PD Y+ ++ K QI A +L E+
Sbjct: 487 LYTLAETGRISE---AEDIFNDLHK-CGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMI 542
Query: 156 KEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+G +PD + +I + G +D A + + +K P +T+ IL+ L G+
Sbjct: 543 SKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGK 600
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ + + +I L K ++ A ++F LK L P Y ++ + G I KA+E
Sbjct: 547 EPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALE 606
Query: 185 TYETMKASGCTPHKLTFTILI 205
+ +M SGC P+ +TF L+
Sbjct: 607 LFGSMTESGCPPNTITFNSLL 627
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + ++D A + + + + + P+L Y+ MI L K +++ A EL ++ G+ P
Sbjct: 385 LCKSGDVDRAFDMLDVMTTKGIF-PNLHTYNTMICGLLKARRLDEALELLENMESLGVKP 443
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP 196
Y I Y + G KA++T+ETMK G P
Sbjct: 444 TAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMP 478
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 7/133 (5%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
LT L ++ ++ AL++F + E P+ ++ ++ L KN + +A ++FC +
Sbjct: 592 LTGLGKEGKILKALELFGSM-TESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMN 650
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE--- 215
+PD Y +I ++ G ID A + MK +P +T LI + G E
Sbjct: 651 CNPDVLTYNTIIYGLIREGRIDYAFWFFHQMKKF-LSPDYVTLCTLIPGVVRHGRVEDAI 709
Query: 216 --LVAAVRRDCIQ 226
++ V + C+Q
Sbjct: 710 KVVMEFVHQACLQ 722
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PD Y ++ GK + + + E++ +G PD YT +I + G +D+A
Sbjct: 336 HSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAF 395
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENA 211
+ + M G P+ T+ +I L A
Sbjct: 396 DMLDVMTTKGIFPNLHTYNTMICGLLKA 423
>gi|357485117|ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514181|gb|AES95804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 892
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
++D+A ++F +++ Y PD Y+ ++ ++ A LF E+ +EG P+ Y
Sbjct: 575 KMDVAYRLFKGMKESRVY-PDQIAYTSLVAGFCNTGEMTRARALFDEMSREGCSPNVVTY 633
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
T I YL++ ++A + YE MK G P ++ +T+LI N GE
Sbjct: 634 TCFINEYLKLNKNNQAHKLYEKMKERGVYPDQILYTMLIAAFCNTGE 680
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ YS +I + ++ A E+F E++ G+ P+ Y+ +I + + G +DKA+E
Sbjct: 313 PDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILPNIYSYSILIDGFCKEGRVDKALEV 372
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+E MK SG P +++ILI G+
Sbjct: 373 FEEMKNSGILPDVYSYSILIDGFCRKGD 400
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 7/86 (8%)
Query: 126 PDLSLYSDMI---LMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKA 182
P++ Y+ I L L KN Q A +L+ ++K+ G+ PD +YT +I + G +++A
Sbjct: 628 PNVVTYTCFINEYLKLNKNNQ---AHKLYEKMKERGVYPDQILYTMLIAAFCNTGEMNRA 684
Query: 183 METYETMKASG-CTPHKLTFTILIRN 207
++ MK G CTP+ + +T LI +
Sbjct: 685 EALFDEMKQEGRCTPNVVMYTCLINS 710
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+ +D A +VF +R P++ YS +I K ++ A E+F E+K G+ PD
Sbjct: 327 RKGRVDQASEVFKEMRNS-GILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDV 385
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
Y+ +I + + G +D A++ +E M ++ +P + LI+
Sbjct: 386 YSYSILIDGFCRKGDMDSAIKFWEEMTSNNFSPSAFNYCSLIK 428
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ E + N+ + A K++ +++ Y PD LY+ +I ++ AE LF E+K+EG
Sbjct: 637 INEYLKLNKNNQAHKLYEKMKERGVY-PDQILYTMLIAAFCNTGEMNRAEALFDEMKQEG 695
Query: 159 -LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG 193
P+ +YT +I Y+++ D+A + YE M+A G
Sbjct: 696 RCTPNVVMYTCLINSYIKLNKRDQAEKLYEEMRAKG 731
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 42/79 (53%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
++ Y+ +I + + ++ +A LF +K+ + PD YT ++ + G + +A +
Sbjct: 559 NVKTYTILINLFISDCKMDVAYRLFKGMKESRVYPDQIAYTSLVAGFCNTGEMTRARALF 618
Query: 187 ETMKASGCTPHKLTFTILI 205
+ M GC+P+ +T+T I
Sbjct: 619 DEMSREGCSPNVVTYTCFI 637
>gi|297741611|emb|CBI32743.3| unnamed protein product [Vitis vinifera]
Length = 772
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE PD+ Y+ MI + K++ AE+ F E+K ++P YT MI Y+ VG +
Sbjct: 284 KERRISPDVVTYNTMINGYYRIKKMEEAEKFFVEMKGRNIEPTVISYTTMIKGYVSVGRV 343
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNL 208
D + +E MK+ G P+ +T++ L+ L
Sbjct: 344 DDGLRLFEEMKSFGIKPNAVTYSTLLPGL 372
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+ +A + FN + E P Y+ MI + ++ A F E+K+ + PD
Sbjct: 234 RRGRYMMAKRYFNAMLNE-GVMPTCHTYNIMIWGFFLSLKVETANRFFEEMKERRISPDV 292
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
Y MI Y ++ +++A + + MK P +++T +I+ + G
Sbjct: 293 VTYNTMINGYYRIKKMEEAEKFFVEMKGRNIEPTVISYTTMIKGYVSVG 341
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 48/85 (56%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
D AL+ F +V + ++ D + +I +LG+ ++ A + ++ K+G++ D ++
Sbjct: 133 DHALQFFRWVERAGLFRHDRDTHLKIIEILGRASKLNHARCILLDMPKKGVEWDEDLFVL 192
Query: 169 MIGVYLQVGMIDKAMETYETMKASG 193
+I Y + G++ ++++ ++ MK G
Sbjct: 193 LIDSYGKAGIVQESVKVFQKMKELG 217
>gi|413953459|gb|AFW86108.1| hypothetical protein ZEAMMB73_051838 [Zea mays]
Length = 388
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 6/133 (4%)
Query: 80 EEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
E+GF C L+D L + +R DLA ++F + KE +Y+ MI LG
Sbjct: 39 EKGFPP--CPAAYCSLIDALGKAKR---YDLACELFQEL-KENCGSSSARVYAVMIKHLG 92
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
K ++ A +F E+ K G PD Y ++ + GMID+A+ T M+ GC P
Sbjct: 93 KAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMIDEALSTMRRMQEHGCIPDIN 152
Query: 200 TFTILIRNLENAG 212
++ I++ L G
Sbjct: 153 SYNIILNGLAKTG 165
Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 1/110 (0%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD++ Y+ ++ L K A E+ +K+ + PD Y ++G GM ++A +
Sbjct: 149 PDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVSPDVVSYNTVLGALSHAGMFEEASKL 208
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFL 235
+ M G +T++ ++ + + EE + V R ERF+
Sbjct: 209 MKEMNTLGFEYDLITYSSILEAIGKS-EEAIATIVPRYTYSMRVLDERFI 257
>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
Length = 420
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L ++ ++ A+++F + +E PD Y+ +I L K+ Q+ M L E++ G
Sbjct: 98 INGLCKKGQIAEAMEIFREM-EEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARG 156
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
P YT +I + G +D AM+ + M+ G TP+ +T+T LI+ L + GE E
Sbjct: 157 FSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVE 213
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ +Y+ +I L K ++ A E+ + ++G+ PD YT +I G++D+A+
Sbjct: 302 DVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLM 361
Query: 187 ETMKASGCTPHKLTFTILIRNLENA 211
+ M+A G P+ +T+T LI A
Sbjct: 362 QEMRAKGIVPNSVTYTTLINGFTQA 386
Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L ++ ELD A + + E PD+ Y+ +I L + A L E+
Sbjct: 309 LIDGLCKM---GELDFA-REMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEM 364
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ +G+ P++ YT +I + Q D A++ MK++G P + IL ++L
Sbjct: 365 RAKGIVPNSVTYTTLINGFTQADRTDHALQLVNEMKSNGLMPAGDIYKILFKSL 418
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ P + Y+ +I ++ A ++ E++ G+ P+T YT +I G +++A+
Sbjct: 157 FSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAI 216
Query: 184 ETYETMKASG--CTPHKLTFTILIRNLENAG 212
+ MK G C P+ +T+T LI L G
Sbjct: 217 LVLKEMKLRGNECCPNVVTYTQLIHGLCQKG 247
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD--PDTRVYTEMIGVYLQVGMIDKAM 183
P+ Y+ +I L ++ A + E+K G + P+ YT++I Q G+ + M
Sbjct: 194 PNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGM 253
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAG 212
E + M SGC P+ T+T LI L G
Sbjct: 254 EFLDEMIISGCFPNNATYTALIHGLCQKG 282
>gi|302769109|ref|XP_002967974.1| hypothetical protein SELMODRAFT_88078 [Selaginella moellendorffii]
gi|300164712|gb|EFJ31321.1| hypothetical protein SELMODRAFT_88078 [Selaginella moellendorffii]
Length = 376
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 5/114 (4%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ + +LD A KVF +E+ P+L ++ + L + K I+ A +++ +L+K+G
Sbjct: 246 ISTFSKHGKLDDARKVF----RELA-SPELVHFNSFMSALCQRKLISEAFQVYEQLQKKG 300
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
L PDT YT +IG VG D+A+ +TM + C P +T+ IL L AG
Sbjct: 301 LVPDTYTYTILIGGLCDVGRTDQALSLKDTMIQNNCKPDSVTYGILRAGLLKAG 354
Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L + +E AL V + + + P + +Y+ +I L K ++ A EL +
Sbjct: 70 LVDGFLRLSKFSE---ALAVLDVMAERGCIPPAI-VYNQLIDGLCKAGKVEEAFELSTTM 125
Query: 155 KKEGLDPDTRVYTEMI-GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
K G P Y +I G+ LQ G D+A + + M SG P +T+T+LI +L G
Sbjct: 126 VKNGCSPTLYTYNSLINGLCLQ-GKTDEARDFLQEMADSGYNPDVVTYTVLINSLRRDGN 184
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 19/119 (15%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P L Y+ +I L + A + E+ G +PD YT +I + G A++
Sbjct: 132 PTLYTYNSLINGLCLQGKTDEARDFLQEMADSGYNPDVVTYTVLINSLRRDGNFKAAVDV 191
Query: 186 YETMKA-SGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVYQKHR 243
++ M + GC P + ++ L L+ + C+Q V +E +KHR
Sbjct: 192 FDEMVSKGGCVPDRASYMPL-----------LIGLCKEGCVQLV-------QEFLEKHR 232
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 62/158 (39%), Gaps = 30/158 (18%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEE--------- 149
+ LRR A+ VF+ + + PD + Y +++ L K + + +E
Sbjct: 176 INSLRRDGNFKAAVDVFDEMVSKGGCVPDRASYMPLLIGLCKEGCVQLVQEFLEKHRARL 235
Query: 150 ---------LFCELKKEG-LDPDTRVYTEM-----------IGVYLQVGMIDKAMETYET 188
L K G LD +V+ E+ + Q +I +A + YE
Sbjct: 236 DLGSFFHNLLISTFSKHGKLDDARKVFRELASPELVHFNSFMSALCQRKLISEAFQVYEQ 295
Query: 189 MKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
++ G P T+TILI L + G + +++ IQ
Sbjct: 296 LQKKGLVPDTYTYTILIGGLCDVGRTDQALSLKDTMIQ 333
>gi|242062936|ref|XP_002452757.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
gi|241932588|gb|EES05733.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
Length = 502
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 51/89 (57%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ ++ LG Q+ A ++F E+ +EG P Y +I V + G ++ A+
Sbjct: 282 KPDVVSYTTVLHGLGVAGQLDKARKVFDEMSREGCTPSIATYNALIQVTCKKGNVEDAVA 341
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
++ M G P+ +T+T+LIR L +AG+
Sbjct: 342 VFDDMIRKGYIPNVVTYTVLIRGLCHAGK 370
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 74/137 (54%), Gaps = 7/137 (5%)
Query: 104 RQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
++ ++ A+ VF+ +RK Y P++ Y+ +I L +I A +L ++K+EG +P+
Sbjct: 332 KKGNVEDAVAVFDDMIRK--GYIPNVVTYTVLIRGLCHAGKIDRAMKLLDKMKREGCEPN 389
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETM-KASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
+ Y +IG + G I+KA+ +ETM K C P++ T+ I+I + E +A
Sbjct: 390 VQTYNVLIGYLFEEGDIEKALHLFETMSKGEECLPNQDTYNIIISAMFVRKRAEDMAVAA 449
Query: 222 RDCIQYVE---FPERFL 235
R ++ V+ P RF+
Sbjct: 450 RMVVEMVDRGYLPRRFM 466
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
+LD A KVF+ + +E P ++ Y+ +I + K + A +F ++ ++G P+
Sbjct: 299 GQLDKARKVFDEMSRE-GCTPSIATYNALIQVTCKKGNVEDAVAVFDDMIRKGYIPNVVT 357
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
YT +I G ID+AM+ + MK GC P+ T+ +LI L G+ E
Sbjct: 358 YTVLIRGLCHAGKIDRAMKLLDKMKREGCEPNVQTYNVLIGYLFEEGDIE 407
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD-----PDTRVYTEMIGVYLQ 175
E P + Y+ ++ ++ Q+ A + F ++KK G + PD YT ++
Sbjct: 238 ESGIAPTKTTYNIILKGFFRSGQLQHAWDFFLQMKKRGSNDENCKPDVVSYTTVLHGLGV 297
Query: 176 VGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
G +DKA + ++ M GCTP T+ LI+ G E AV D I+ P
Sbjct: 298 AGQLDKARKVFDEMSREGCTPSIATYNALIQVTCKKGNVEDAVAVFDDMIRKGYIPN 354
>gi|356528212|ref|XP_003532699.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37230-like [Glycine max]
Length = 738
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 62/110 (56%), Gaps = 6/110 (5%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I + K++ AE+LF E+K + P+ +T M+ Y+ G ID A++
Sbjct: 260 PDVVTYNTLINGYFRFKKVEEAEKLFVEMKGRDIVPNVISFTTMLKGYVAAGQIDDALKV 319
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFL 235
+E MK G P+ +TF+ L+ L +A E++ A RD + E ER++
Sbjct: 320 FEEMKGCGVKPNAVTFSTLLPGLCDA--EKMAEA--RDVLG--EMVERYI 363
Score = 37.0 bits (84), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+ +A + +N + E +P Y+ ++ + + ++ A + ++K G+ PD
Sbjct: 204 RRGRYMMAKRYYNAMLNES-VEPTRHTYNILLWGMFLSLRLDTAVRFYEDMKSRGILPDV 262
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
Y +I Y + +++A + + MK P+ ++FT +++ AG+
Sbjct: 263 VTYNTLINGYFRFKKVEEAEKLFVEMKGRDIVPNVISFTTMLKGYVAAGQ 312
>gi|357447159|ref|XP_003593855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482903|gb|AES64106.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 790
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + D AL VF +E + D YS ++ KNK I A+ L ++ +G +P
Sbjct: 383 LSKHGHADDAL-VFLREAEEKGFHIDKVGYSAVVDSFCKNKNIDKAKSLVIDMYSKGCNP 441
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
D YT +I + +VG ID+A + + M GC P+ +T+T+L+ L + G+
Sbjct: 442 DVVTYTAIIDGFCRVGKIDEAKKMLQQMYKHGCKPNTVTYTVLLNGLCHNGK 493
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
+ R L AL++ ++K +PDLS+ + I +L K ++ A +K
Sbjct: 238 VMVSYSRAGMLRNALRILTLMQK-AGVEPDLSICNTAIYVLVKGNKLEKALRFLERMKVA 296
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF 201
G++PD Y +I Y V ID A+E M GC P K+++
Sbjct: 297 GIEPDIVSYNCLIKGYCDVHRIDDALELIAEMPFKGCPPDKVSY 340
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ + LGK ++ A EL ++ +G+DP Y +I + Q G +D M+
Sbjct: 616 PDAITYTTLFDALGKKSRLDEASELIVKMLGKGIDPTPVTYRAVIHRFCQWGRVDDMMKL 675
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
E M A P K + +I L G E
Sbjct: 676 LEKMIAR--QPFKTVYNQVIEKLCYFGNRE 703
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ +I L K+ A E +++G D Y+ ++ + + IDKA
Sbjct: 371 PDQVTYNTLIYALSKHGHADDALVFLREAEEKGFHIDKVGYSAVVDSFCKNKNIDKAKSL 430
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
M + GC P +T+T +I G+
Sbjct: 431 VIDMYSKGCNPDVVTYTAIIDGFCRVGK 458
>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
Length = 1512
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LLD L + L+ A+ +F ++K +KP++ ++S ++ + + ++ A + F E+
Sbjct: 1336 LLDGLC---KNGHLEEAMDLFQSIKK-TEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEI 1391
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
K GL+PDT Y +I GM+ +A++ M+ GC P +TF ++I+NL
Sbjct: 1392 SKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNL 1445
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
K D+ Y +I L K+ A ++F E+ G+ PD VY+ ++ + G + +A+E
Sbjct: 1082 KGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALE 1141
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
++ M+ G + T+ LI L AG
Sbjct: 1142 FFKEMEGRGISADVYTYNSLIHGLSRAG 1169
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%)
Query: 128 LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYE 187
LS Y ++ L KN + A +LF +KK P+ V++ ++ + G +++A + ++
Sbjct: 1330 LSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFD 1389
Query: 188 TMKASGCTPHKLTFTILIRNLENAG 212
+ +G P + + ILI L N G
Sbjct: 1390 EISKNGLEPDTIAYNILINGLCNKG 1414
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ +YS ++ L + ++ A E F E++ G+ D Y +I + G+ +
Sbjct: 1118 PDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWF 1177
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
M G +P TFTILI L G+
Sbjct: 1178 LNLMVDRGFSPDAFTFTILIDGLCKEGK 1205
Score = 40.0 bits (92), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 128 LSLYSDMILMLG--KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
L+++S IL+ G K+++I A F E++ +GL P T Y +IG Q G + A +
Sbjct: 1258 LNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKL 1317
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ M+ G T+ +L+ L G E
Sbjct: 1318 FVEMQTCGQFLKLSTYCVLLDGLCKNGHLE 1347
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ Y+ ++ L Q+ A +LF L G+ + Y +I Y + ID+A
Sbjct: 1222 EPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFR 1281
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+E M+ G P +T+ LI L +G
Sbjct: 1282 FFEEMRPKGLKPSTVTYNTLIGALCQSG 1309
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ ++D A + F +R + KP Y+ +I L ++ ++ A++LF E++ G
Sbjct: 1272 KDQKIDEAFRFFEEMRPK-GLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKL 1330
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
Y ++ + G +++AM+ ++++K + P+ F+IL+ + AG+ E
Sbjct: 1331 STYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLE 1382
>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
Length = 550
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 14/165 (8%)
Query: 59 LSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFV 118
L + I+ MKL + + S ICR +L+ A ++F+ +
Sbjct: 236 LKKDGIELYEKMKLTGIVPNVYT-YNSMICRCC------------NDGKLNNAFELFDEM 282
Query: 119 RKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM 178
R E ++ Y+ +I L + +++ AE L C +K++GL P+ Y +I Y +G
Sbjct: 283 R-ERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGN 341
Query: 179 IDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
+DKA + MK+SG +P T+ ILI A V + R+
Sbjct: 342 LDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVRE 386
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 49/94 (52%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E+ P++ +Y+ +I KN I ++LF ++ + + + YT +I + ++G+
Sbjct: 178 EEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLK 237
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+E YE MK +G P+ T+ +I N G+
Sbjct: 238 KDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGK 271
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
LD A +FN + K P L+ Y+ +I + K A ++ E++ GL P Y
Sbjct: 341 NLDKASSLFNQM-KSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTY 399
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
T ++ ++ I+KA + Y +M+ +G + +LI L G+
Sbjct: 400 TILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGD 446
>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LLD L + L+ A+ +F ++K +KP++ ++S ++ + + ++ A + F E+
Sbjct: 397 LLDGLC---KNGHLEEAIDLFQSIKK-TEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEI 452
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
K GL+PDT Y +I GM+ +A++ M+ GC P +TF ++I+NL
Sbjct: 453 SKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNL 506
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
K D+ Y +I L K+ A ++F E+ G+ PD VY+ ++ + G + +A+E
Sbjct: 143 KGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALE 202
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
++ M+ G + T+ LI L AG
Sbjct: 203 FFKEMEGRGISADVYTYNSLIHGLSRAG 230
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%)
Query: 128 LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYE 187
LS Y ++ L KN + A +LF +KK P+ V++ ++ + G +++A + ++
Sbjct: 391 LSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFD 450
Query: 188 TMKASGCTPHKLTFTILIRNLENAG 212
+ +G P + + ILI L N G
Sbjct: 451 EISKNGLEPDTIAYNILINGLCNKG 475
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ +YS ++ L + ++ A E F E++ G+ D Y +I + G+ +
Sbjct: 179 PDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWF 238
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
M G +P TFTILI L G+
Sbjct: 239 LNLMVDRGFSPDAFTFTILIDGLCKEGK 266
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 128 LSLYSDMILMLG--KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
L+++S IL+ G K+++I A LF E++ +GL P T Y +IG Q G + A +
Sbjct: 319 LNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKL 378
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ M+ G T+ +L+ L G E
Sbjct: 379 FVEMQTCGQFLKLSTYCVLLDGLCKNGHLE 408
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L + + E L++ + KE PD+ Y+ ++ L Q+ A +LF L
Sbjct: 257 LIDGLCKEGKVGEAQQILELMHHKGKE----PDILTYNTLMNGLCLVGQLEDATKLFESL 312
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
G+ + Y +I Y + ID+A +E M+ G P +T+ LI L +G
Sbjct: 313 ADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSG 370
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 60/112 (53%), Gaps = 1/112 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ ++D A ++F +R + KP Y+ +I L ++ ++ A++LF E++ G
Sbjct: 333 KDQKIDEAFRLFEEMRPK-GLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKL 391
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
Y ++ + G +++A++ ++++K + P+ F+IL+ + AG+ E
Sbjct: 392 STYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLE 443
>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
Length = 558
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 105 QNELDLALKVFNF-VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ LD A ++F F V K+ + PDL Y+ +I K+K++ ELF E+ GL DT
Sbjct: 302 HDRLDKAKQMFEFMVSKDCF--PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDT 359
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
YT +I G D A + ++ M + G P +T++IL+ L N G+ E
Sbjct: 360 VTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE 411
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L +L+ AL+VF++++K K D+ +Y+ MI + K ++ +LFC L +G
Sbjct: 401 LDGLCNNGKLEKALEVFDYMQKS-EIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKG 459
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI----RNLENAGEE 214
+ P+ Y MI ++ +A + MK G P T+ LI R+ + A
Sbjct: 460 VKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASA 519
Query: 215 ELVAAVR 221
EL+ +R
Sbjct: 520 ELIREMR 526
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
P+L ++ +I K + AE+L ++ K +DPD Y +I + +DKA +
Sbjct: 251 NPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQ 310
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
+E M + C P T+ LI+
Sbjct: 311 MFEFMVSKDCFPDLDTYNTLIKGF 334
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + D A KVF + + PD+ YS ++ L N ++ A E+F ++K +
Sbjct: 369 LFHDGDCDNAQKVFKQMVSD-GVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL 427
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
D +YT MI + G +D + + ++ G P+ +T+ +I L
Sbjct: 428 DIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGL 474
Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI-GVYLQVGMI 179
++ Y+P + S ++ K+I+ A L ++ + G PDT +T +I G++L
Sbjct: 72 KLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH-NKA 130
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
+A+ + M GC P+ +T+ +++ L G+ +L
Sbjct: 131 SEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDL 167
>gi|297737955|emb|CBI27156.3| unnamed protein product [Vitis vinifera]
Length = 625
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
+ALKVF+ +R + KP++ ++ ++ + AEE+F +L++ GL+PD Y +
Sbjct: 329 MALKVFHEMRSQKC-KPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNAL 387
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+ Y + G A E + M+ GC P + ++ I++ AG E AV
Sbjct: 388 MEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAV 438
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y D+S Y+ +I + G+ A EELF L L PD +T IG Y + ++ +
Sbjct: 517 YPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCL 576
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
E +E M +GC P T +L+ N + + V V R
Sbjct: 577 EVFEEMIDAGCYPDGGTAKVLLSACSNGDQIQEVTTVIR 615
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 66/160 (41%), Gaps = 4/160 (2%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
D+++ +LR + D + + ++ + PD+ Y+ +I G+ AE + E
Sbjct: 172 DIINVAVQLRLNKQWDAIVLICGWILYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLE 231
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
L + P Y ++ Y G+++KA + M+ G P + + I L G+
Sbjct: 232 LLEARCVPTEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGD 291
Query: 214 E----ELVAAVRRDCIQYVEFPERFLEEVYQKHRKTQVDL 249
E+ ++RD Q L +Y K K+ + L
Sbjct: 292 TQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMAL 331
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
L+ A VF +RK + P +Y+ I L K A E+F +K++ P T YT
Sbjct: 257 LEKAEAVFAEMRK-YGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYT 315
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+I +Y + A++ + M++ C P+ TFT L+ G
Sbjct: 316 MLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREG 360
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E +PD+ Y+ ++ + A E+F ++ G +PD Y M+ Y + G+
Sbjct: 373 QEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLH 432
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRRDCIQYVEFPERFL 235
+ A +E MK G TP + +L+ AG+ EE+V + + I+ P+ F+
Sbjct: 433 EDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIK----PDTFV 488
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 43/95 (45%)
Query: 118 VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177
V K + P + + ++ + ++A EE+ ++ K G+ PDT V M+ +Y ++G
Sbjct: 441 VMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLG 500
Query: 178 MIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+K E M+ T+ ILI AG
Sbjct: 501 QFEKMEEVLTAMEKGPYPADISTYNILINIYGRAG 535
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD + + M+ + G+ Q EE+ ++K D Y +I +Y + G + E
Sbjct: 483 KPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEE 542
Query: 185 TYETMKASGCTPHKLTFT 202
+ ++ A P +T+T
Sbjct: 543 LFRSLPARNLIPDVVTWT 560
>gi|225423724|ref|XP_002276864.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Vitis vinifera]
Length = 587
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
+ALKVF+ +R + KP++ ++ ++ + AEE+F +L++ GL+PD Y +
Sbjct: 291 MALKVFHEMRSQKC-KPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNAL 349
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+ Y + G A E + M+ GC P + ++ I++ AG E AV
Sbjct: 350 MEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAV 400
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y D+S Y+ +I + G+ A EELF L L PD +T IG Y + ++ +
Sbjct: 479 YPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCL 538
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
E +E M +GC P T +L+ N + + V V R
Sbjct: 539 EVFEEMIDAGCYPDGGTAKVLLSACSNGDQIQEVTTVIR 577
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 147 AEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
AE +F E++K G P VY I ++ G KA+E +E MK C P T+T+LI
Sbjct: 222 AEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLI 280
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 66/160 (41%), Gaps = 4/160 (2%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
D+++ +LR + D + + ++ + PD+ Y+ +I G+ AE + E
Sbjct: 134 DIINVAVQLRLNKQWDAIVLICGWILYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLE 193
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
L + P Y ++ Y G+++KA + M+ G P + + I L G+
Sbjct: 194 LLEARCVPTEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGD 253
Query: 214 E----ELVAAVRRDCIQYVEFPERFLEEVYQKHRKTQVDL 249
E+ ++RD Q L +Y K K+ + L
Sbjct: 254 TQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMAL 293
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
L+ A VF +RK + P +Y+ I L K A E+F +K++ P T YT
Sbjct: 219 LEKAEAVFAEMRK-YGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYT 277
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+I +Y + A++ + M++ C P+ TFT L+ G
Sbjct: 278 MLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREG 322
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E +PD+ Y+ ++ + A E+F ++ G +PD Y M+ Y + G+
Sbjct: 335 QEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLH 394
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRRDCIQYVEFPERFL 235
+ A +E MK G TP + +L+ AG+ EE+V + + I+ P+ F+
Sbjct: 395 EDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIK----PDTFV 450
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 129 SLYSDMILMLGKNK--QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
++ S M+L+ ++ ++A EE+ ++ K G+ PDT V M+ +Y ++G +K E
Sbjct: 412 TMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVL 471
Query: 187 ETMKASGCTPHKLTFTILIRNLENAG 212
M+ T+ ILI AG
Sbjct: 472 TAMEKGPYPADISTYNILINIYGRAG 497
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD + + M+ + G+ Q EE+ ++K D Y +I +Y + G + E
Sbjct: 445 KPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEE 504
Query: 185 TYETMKASGCTPHKLTFT 202
+ ++ A P +T+T
Sbjct: 505 LFRSLPARNLIPDVVTWT 522
>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Glycine max]
Length = 1476
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 84/188 (44%), Gaps = 19/188 (10%)
Query: 46 RDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEG-FQSRICRLLKADLLDTLTELRR 104
RD N WR RV + + LA S + G + R ++ D + + +
Sbjct: 143 RDKN----WRERV------KYLTDTILALKSEEFVAGVLEERRVQMTPTDFCFVVKWVGQ 192
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
QN AL+++ + WY P+ + + ++ +LGK Q A+A E+F + D +
Sbjct: 193 QN-WQRALELYECLNLRHWYAPNARMVATILGVLGKANQEALAVEIFARAESSVGD-TVQ 250
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE------LVA 218
VY M+GVY + G K E + M+ GC P ++F LI +G E L+
Sbjct: 251 VYNAMMGVYARNGRFSKVKELLDLMRERGCVPDLVSFNTLINARMKSGAMEPNLALQLLN 310
Query: 219 AVRRDCIQ 226
VRR I+
Sbjct: 311 EVRRSGIR 318
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 36/152 (23%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R++ L+ A+ VF+ + +PDL Y+ MI + G+ + AEELF EL+ +G PD
Sbjct: 333 RESNLEEAVAVFSDMESHRC-QPDLWTYNAMISVYGRCARARKAEELFKELESKGFFPDA 391
Query: 164 RVYTEM-----------------------------------IGVYLQVGMIDKAMETYET 188
Y + I +Y + G D+AM+ Y
Sbjct: 392 VTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQAMQIYRD 451
Query: 189 MKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
MK+SG P +T+T+LI +L A + E A V
Sbjct: 452 MKSSGRNPDAVTYTVLIDSLGKASKVEEAANV 483
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+Q D A++++ + K PD Y+ +I LGK ++ A + E+ G+ P
Sbjct: 438 KQGRHDQAMQIYRDM-KSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDAGVKPTL 496
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y+ +I Y + G ++A ET+ M+ SG P +L +++++
Sbjct: 497 HTYSALICAYAKAGKREEAEETFNCMRRSGIKPDRLAYSVML 538
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 96 LDTLTELRRQN---ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
+TL R ++ E +LAL++ N VR+ +PD+ Y+ +I + + A +F
Sbjct: 287 FNTLINARMKSGAMEPNLALQLLNEVRRS-GIRPDIITYNTLISACSRESNLEEAVAVFS 345
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+++ PD Y MI VY + KA E ++ +++ G P +T+ L+ G
Sbjct: 346 DMESHRCQPDLWTYNAMISVYGRCARARKAEELFKELESKGFFPDAVTYNSLLYAFSREG 405
Query: 213 EEELV 217
E V
Sbjct: 406 NTEKV 410
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP L YS +I K + AEE F +++ G+ PD Y+ M+ +L+ + KAM
Sbjct: 493 KPTLHTYSALICAYAKAGKREEAEETFNCMRRSGIKPDRLAYSVMLDFFLRFNEMKKAMG 552
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
Y M G TP + +++ L ++V + RD
Sbjct: 553 LYHEMIREGFTPDNGLYEVMMHALVRENMWDVVDRIIRD 591
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 89 RLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAE 148
++ K+ +L TL + L K++N + K Y P + +Y M+ +L K K++ E
Sbjct: 876 KISKSSILLTLEAFAQAGNLFEVQKIYNGM-KAAGYFPTMHVYRIMLRLLCKCKRVRDVE 934
Query: 149 ELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ CE+++ G PD ++ ++ +YL + Y+ ++ + P + T+ LI
Sbjct: 935 TMLCEMEEAGFQPDLQICNSILKLYLGIEDFKSMGIIYQKIQDASLKPDEETYNTLI 991
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 39/91 (42%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P L Y +I K + AEELF EL+ G D Y M+ Y G KA
Sbjct: 1016 EPKLDTYRSLITAFNKQRMYEQAEELFEELRSNGYKLDRAFYHLMMKTYRTSGDHRKAEN 1075
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
MK SG P T +L+ + +G+ E
Sbjct: 1076 LLAIMKESGIEPTISTMHLLMVSYGKSGQPE 1106
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%)
Query: 118 VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177
+ KE +P +S +++ GK+ Q AE + L+ G+ DT Y+ +I YL+ G
Sbjct: 1079 IMKESGIEPTISTMHLLMVSYGKSGQPEEAENVLKNLRTTGVVLDTLPYSSVIDAYLKKG 1138
Query: 178 MIDKAMETYETMKASGCTPHKLTFTILIR 206
+E MK +G P +T IR
Sbjct: 1139 DFKAGIEKLTEMKEAGIEPDHRIWTCFIR 1167
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ +I M GK + A +++ ++K G +PD YT +I + +++A M
Sbjct: 429 YNTIIHMYGKQGRHDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSEML 488
Query: 191 ASGCTPHKLTFTILIRNLENAGE----EELVAAVRRDCIQYVEFPERFLEEV 238
+G P T++ LI AG+ EE +RR I+ P+R V
Sbjct: 489 DAGVKPTLHTYSALICAYAKAGKREEAEETFNCMRRSGIK----PDRLAYSV 536
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/106 (20%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD Y+ +I+M ++++ L +++ GL+P Y +I + + M ++A E
Sbjct: 981 KPDEETYNTLIIMYCRDRRPEEGFSLMNKMRSLGLEPKLDTYRSLITAFNKQRMYEQAEE 1040
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRRDCIQ 226
+E ++++G + + ++++ +G+ E L+A ++ I+
Sbjct: 1041 LFEELRSNGYKLDRAFYHLMMKTYRTSGDHRKAENLLAIMKESGIE 1086
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 14/123 (11%)
Query: 74 KSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSD 133
+SS L +G S CR+ DL +T L +++ + + D+S+Y D
Sbjct: 734 ESSECLYQGMVSVYCRM---DLPETAHHL-----------LYHAEKNGIILDNDISVYID 779
Query: 134 MILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG 193
++ GK K AE L L++ D +V+ +I Y G ++A + TM G
Sbjct: 780 IVETYGKLKIWQKAESLVGSLRQRCSKMDRKVWNALIHAYAFSGCYERARAIFNTMMRDG 839
Query: 194 CTP 196
+P
Sbjct: 840 PSP 842
>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 105 QNELDLALKVFNF-VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ LD A ++F F V K+ + PDL Y+ +I K+K++ ELF E+ GL DT
Sbjct: 303 HDRLDKAKQMFEFMVSKDCF--PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDT 360
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
YT +I G D A + ++ M + G P +T++IL+ L N G+ E
Sbjct: 361 VTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE 412
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L +L+ AL+VF++++K K D+ +Y+ MI + K ++ +LFC L +G
Sbjct: 402 LDGLCNNGKLEKALEVFDYMQKS-EIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKG 460
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI----RNLENAGEE 214
+ P+ Y MI ++ +A + MK G P T+ LI R+ + A
Sbjct: 461 VKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASA 520
Query: 215 ELVAAVR 221
EL+ +R
Sbjct: 521 ELIREMR 527
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
P+L ++ +I K + AE+L ++ K +DPD Y +I + +DKA +
Sbjct: 252 NPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQ 311
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
+E M + C P T+ LI+
Sbjct: 312 MFEFMVSKDCFPDLDTYNTLIKGF 335
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + D A KVF + + PD+ YS ++ L N ++ A E+F ++K +
Sbjct: 370 LFHDGDCDNAQKVFKQMVSD-GVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL 428
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
D +YT MI + G +D + + ++ G P+ +T+ +I L
Sbjct: 429 DIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGL 475
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R++++ LAL + + K + Y+P + S ++ K+I+ A L ++ + G PDT
Sbjct: 57 RRSQISLALALLGKMMK-LGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDT 115
Query: 164 RVYTEMI-GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
+T +I G++L +A+ + M GC P+ +T+ +++ L G+ +L
Sbjct: 116 ITFTTLIHGLFLH-NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDL 168
>gi|302833221|ref|XP_002948174.1| hypothetical protein VOLCADRAFT_116752 [Volvox carteri f.
nagariensis]
gi|300266394|gb|EFJ50581.1| hypothetical protein VOLCADRAFT_116752 [Volvox carteri f.
nagariensis]
Length = 1001
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
YS +I K Q A +F E++++ P+T Y ++ Q G +KA E +E M
Sbjct: 322 YSSLISACEKAGQWETALRIFNEMQQDKCVPNTVTYNSLVTACAQGGQWEKAAEVFEQMN 381
Query: 191 ASGCTPHKLTFTILIRNLENAGE-EELVAAVRRDCIQ 226
A GCTP +T+T LI E G+ ++ + A + C+Q
Sbjct: 382 AHGCTPDVVTYTALISAYERGGQWQKALQAFHKMCVQ 418
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ + + + AL++FN ++++ P+ Y+ ++ + Q A E+F ++ G
Sbjct: 326 ISACEKAGQWETALRIFNEMQQDKCV-PNTVTYNSLVTACAQGGQWEKAAEVFEQMNAHG 384
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
PD YT +I Y + G KA++ + M GC P + + +I L G
Sbjct: 385 CTPDVVTYTALISAYERGGQWQKALQAFHKMCVQGCKPDAIVYNAIIDTLWETG 438
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 5/120 (4%)
Query: 101 ELRRQNELDLALKVFNFVRKEVWYKP-----DLSLYSDMILMLGKNKQIAMAEELFCELK 155
+L R + A+++F+++R P D+ Y+ I + + + A EL E++
Sbjct: 112 DLSRLGKDRRAMELFDWLRSANERSPLRALCDVYSYTATISLCIHGQDVDRALELMQEMR 171
Query: 156 KEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ + YT ++ V ++ G + A++ Y +M+A C P+ +T+ L+ G+ E
Sbjct: 172 SRNIERNVHTYTALMNVCIKCGKLPLALDIYNSMRAVNCMPNVVTYNTLVDVYGKLGQWE 231
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
+L LAL ++N +R V P++ Y+ ++ + GK Q A + +K EG++P R
Sbjct: 193 GKLPLALDIYNSMRA-VNCMPNVVTYNTLVDVYGKLGQWERAIHVLDVMKHEGVEPVLRT 251
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y +I +A+ Y+ + + G TP+ T+ LI
Sbjct: 252 YNTLIIACNMCNQPREALAVYQRLLSDGFTPNSTTYNALI 291
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D +L + + A+ V + ++ E +P L Y+ +I+ Q A ++ L
Sbjct: 220 LVDVYGKL---GQWERAIHVLDVMKHEG-VEPVLRTYNTLIIACNMCNQPREALAVYQRL 275
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
+G P++ Y +I Y + + KA+E Y+ M +T++ LI E AG+
Sbjct: 276 LSDGFTPNSTTYNALISAYGKTTQLGKALEVYQEMLRQNMDRSVITYSSLISACEKAGQW 335
Query: 215 E 215
E
Sbjct: 336 E 336
>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
Length = 563
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 14/165 (8%)
Query: 59 LSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFV 118
L + I+ MKL + + S ICR +L+ A ++F+ +
Sbjct: 249 LKKDGIELYEKMKLTGIVPNVYT-YNSMICRCC------------NDGKLNNAFELFDEM 295
Query: 119 RKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM 178
R E ++ Y+ +I L + +++ AE L C +K++GL P+ Y +I Y +G
Sbjct: 296 R-ERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGN 354
Query: 179 IDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
+DKA + MK+SG +P T+ ILI A V + R+
Sbjct: 355 LDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVRE 399
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 49/94 (52%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E+ P++ +Y+ +I KN I ++LF ++ + + + YT +I + ++G+
Sbjct: 191 EEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLK 250
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+E YE MK +G P+ T+ +I N G+
Sbjct: 251 KDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGK 284
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
LD A +FN + K P L+ Y+ +I + K A ++ E++ GL P Y
Sbjct: 354 NLDKASSLFNQM-KSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTY 412
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
T ++ ++ I+KA + Y +M+ +G + +LI L G+
Sbjct: 413 TILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGD 459
>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL +F +R + + +PD+ Y+++I LGK ++ A F E+++EG PDT + MI
Sbjct: 280 ALGLFEEMRHQ-YCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMI 338
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ G +D A++ +E M+ C P +T+ +I+ L
Sbjct: 339 NFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKAL 376
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ P + Y +I LGK K+ +A ELF ELK+ RVY MI + G +D A+
Sbjct: 433 FPPCPAAYCSLIDALGKAKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAV 492
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGE-EELVAAVRR 222
+ ++ M GCTP+ + L+ L AG +E + +RR
Sbjct: 493 DLFDEMNRLGCTPNVYAYNALMSGLARAGMLDEALTTMRR 532
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 15/157 (9%)
Query: 80 EEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
E+GF C L+D L + +R DLA ++F + KE +Y+ MI LG
Sbjct: 430 EKGFPP--CPAAYCSLIDALGKAKR---YDLANELFQEL-KENCGSSSARVYAVMIKHLG 483
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
K ++ A +LF E+ + G P+ Y ++ + GM+D+A+ T M+ GC P
Sbjct: 484 KAGRLDDAVDLFDEMNRLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDIN 543
Query: 200 TFTILIRNLENAGEEELV---------AAVRRDCIQY 227
++ I++ L G + +A++ D + Y
Sbjct: 544 SYNIILNALAKTGGPDRAMGMLCNMKQSAIKPDAVSY 580
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%)
Query: 61 SEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRK 120
S+ I+ + K+ + + ++R C+ + L + E + +++N +
Sbjct: 159 SDIIRMLGNAKMISKAVAIFYQIKARKCQPTAHAYNSMIIMLMHEGEYEKVHELYNEMSN 218
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E PD YS +I K + A L E+K G+ P ++YT ++ + ++ +
Sbjct: 219 EGQCFPDTVTYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVH 278
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAG 212
A+ +E M+ C P T+T LIR L AG
Sbjct: 279 GALGLFEEMRHQYCRPDVFTYTELIRGLGKAG 310
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+ +L RQ D A+ + N + K+ +P +Y+ ++ +L K + A LF E+
Sbjct: 232 LISAFCKLGRQ---DSAIWLLNEM-KDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEM 287
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ + PD YTE+I + G +D+A + M+ GC P + +I L AG
Sbjct: 288 RHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAG 345
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/134 (20%), Positives = 57/134 (42%), Gaps = 15/134 (11%)
Query: 82 GFQSRICRLLKADLLD-TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK 140
+ + + L +A +LD LT +RR + PD++ Y+ ++ L K
Sbjct: 509 AYNALMSGLARAGMLDEALTTMRRMQDHGCI--------------PDINSYNIILNALAK 554
Query: 141 NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT 200
A + C +K+ + PD Y ++G GM ++A + + M A G +T
Sbjct: 555 TGGPDRAMGMLCNMKQSAIKPDAVSYNTVLGALSHAGMFEEAAKLMKEMNAIGFDYDLIT 614
Query: 201 FTILIRNLENAGEE 214
++ ++ + +E
Sbjct: 615 YSSILEAIGKVDQE 628
>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 632
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL +F +R ++ +PD+ Y+++I LGK +I A + E+++E PDT V MI
Sbjct: 284 ALSLFEEMRY-MYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMI 342
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ G +D ++ +E M S C P+ +T+ +I+ L
Sbjct: 343 NFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKAL 380
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 70/152 (46%)
Query: 61 SEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRK 120
S+ I+ + K+ + + ++R C+ + L + + + +++N +
Sbjct: 163 SQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSN 222
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E PD YS +I K + A L E+K+ G+ P ++YT +I ++ ++ +
Sbjct: 223 EGHCHPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVH 282
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAG 212
A+ +E M+ C P T+T LIR L AG
Sbjct: 283 GALSLFEEMRYMYCRPDVFTYTELIRGLGKAG 314
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 6/133 (4%)
Query: 80 EEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
E+GF C L+D L + +R DLA ++F + KE +Y+ MI LG
Sbjct: 434 EKGFPP--CPAAYCSLIDALGKAKR---YDLACELFQEL-KENCGSSSARVYAVMIKHLG 487
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
K ++ A LF E+ K G P+ Y ++ + M+D+A+ T M+ GC P
Sbjct: 488 KAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDIN 547
Query: 200 TFTILIRNLENAG 212
++ I++ L G
Sbjct: 548 SYNIILNGLAKTG 560
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+ +L RQ D A+++ N + KE +P +Y+ +I + K + A LF E+
Sbjct: 236 LISAFCKLGRQ---DSAIRLLNEM-KENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEM 291
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ PD YTE+I + G ID+A Y M+ C P + +I L AG
Sbjct: 292 RYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAG 349
>gi|449438586|ref|XP_004137069.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Cucumis sativus]
Length = 505
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 1/125 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+TE R +L LA KVF+ + K + Y+ +I L + Q++ AE L +K+
Sbjct: 219 ITEYCRDGKLSLAFKVFDEISKR-GVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAH 277
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
++P TR + ++ G +DKA+ E +K G P +T+ ILI G +V+
Sbjct: 278 INPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVS 337
Query: 219 AVRRD 223
+ R+
Sbjct: 338 ELVRE 342
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K V P+L Y+ +I ++ ++++A ++F E+ K G+ + Y +IG + G +
Sbjct: 204 KLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQV 263
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
KA E MK + P TF +L+ L N G+
Sbjct: 264 SKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQ 297
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P L Y+ +I K ++ EL E++ G+ P YT ++ +++ I+KA E
Sbjct: 315 PTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEM 374
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ MK G P + T+ +LI L
Sbjct: 375 FHLMKRIGLVPDQHTYGVLIHGL 397
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ +Y+ +I +N I A+ +F + GL + +YT MI + + G E
Sbjct: 140 PNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFEL 199
Query: 186 YETMKASGCTPHKLTFTILI 205
Y+ MK G P+ T+ LI
Sbjct: 200 YQKMKLVGVLPNLYTYNSLI 219
>gi|413938248|gb|AFW72799.1| hypothetical protein ZEAMMB73_717335 [Zea mays]
Length = 501
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ ++ LG Q+ A ++F E+ EG P T Y +I V + G ++ A+
Sbjct: 281 KPDVVSYTTVLHGLGVAGQLDKARKVFDEMSIEGCKPSTATYNALIQVTCKKGNLEDAVA 340
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
++ M G P+ +T+T+LIR L +AG+
Sbjct: 341 VFDDMVRKGYIPNVVTYTVLIRGLCHAGK 369
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 72/137 (52%), Gaps = 7/137 (5%)
Query: 104 RQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
++ L+ A+ VF+ VRK Y P++ Y+ +I L ++ A +L +K EG +P+
Sbjct: 331 KKGNLEDAVAVFDDMVRK--GYIPNVVTYTVLIRGLCHAGKVVRAMKLLDRMKSEGCEPN 388
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETM-KASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
+ Y +I L+ G I+K ++ +ETM K C P++ T+ I+I + E +A
Sbjct: 389 VQTYNVLIRYSLEEGEIEKGLDLFETMSKGEECLPNQDTYNIIISAMFVRKRAEDMAVAA 448
Query: 222 RDCIQYVE---FPERFL 235
R ++ V+ P +F+
Sbjct: 449 RMVVEMVDRGYLPRKFM 465
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
+LD A KVF+ + E KP + Y+ +I + K + A +F ++ ++G P+
Sbjct: 298 GQLDKARKVFDEMSIE-GCKPSTATYNALIQVTCKKGNLEDAVAVFDDMVRKGYIPNVVT 356
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
YT +I G + +AM+ + MK+ GC P+ T+ +LIR GE E
Sbjct: 357 YTVLIRGLCHAGKVVRAMKLLDRMKSEGCEPNVQTYNVLIRYSLEEGEIE 406
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 5/117 (4%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD-----PDTRVYTEMIGVYLQ 175
E P + Y+ ++ ++ Q+ A + F ++K+ G + PD YT ++
Sbjct: 237 ESGIAPTKATYNIILKGFFRSGQLQHAWDFFLQMKRRGSNDENCKPDVVSYTTVLHGLGV 296
Query: 176 VGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
G +DKA + ++ M GC P T+ LI+ G E AV D ++ P
Sbjct: 297 AGQLDKARKVFDEMSIEGCKPSTATYNALIQVTCKKGNLEDAVAVFDDMVRKGYIPN 353
>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Glycine max]
Length = 1113
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
ALKV+ + E KP + YS +++ LG+ + +L E++ GL P+ YT I
Sbjct: 211 ALKVYKRMISE-GLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICI 269
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRR---- 222
V + G ID A +TM+ GC P +T+T+LI L AG+ +EL +R
Sbjct: 270 RVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHK 329
Query: 223 -DCIQYVEFPERF 234
D + Y+ +F
Sbjct: 330 PDLVTYITLMSKF 342
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ MI LGK++++ A LF E+K G+ P+ Y +I + GM+D+A +
Sbjct: 996 PDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKM 1055
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+E ++ G P+ T+ LIR +G ++ +V
Sbjct: 1056 FEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSV 1090
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP+ ++Y+ +I GK + +A +LF + KEG+ PD + YT ++ G +D A+
Sbjct: 925 KPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVH 984
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
+E +K +G P +++ ++I L
Sbjct: 985 YFEELKLTGLDPDTVSYNLMINGL 1008
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ I +LG+ +I A + ++ EG PD YT +I G +DKA E
Sbjct: 259 RPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKE 318
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
Y M+AS P +T+ L+ N G+ E V
Sbjct: 319 LYTKMRASSHKPDLVTYITLMSKFGNYGDLETV 351
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ +++A +F + KE +PDL Y+ ++ L ++ A F ELK GLDPDT
Sbjct: 940 KAGNVNIACDLFKRMIKE-GIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDT 998
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
Y MI + +++A+ + MK G +P T+ LI + NAG
Sbjct: 999 VSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAG 1047
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 75/152 (49%), Gaps = 8/152 (5%)
Query: 61 SEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRK 120
S+A Q A KL + L EG + I ++ L+DTL + R +E A ++F + K
Sbjct: 518 SKAGQIDKATKLL--TEMLSEGCEPDI--IVVNSLIDTLYKAGRVDE---AWQMFGRL-K 569
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
++ P + Y+ +I LGK ++ A +LF +K+ G P+T + ++ + +D
Sbjct: 570 DLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVD 629
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAG 212
A++ + M C+P LT+ +I L G
Sbjct: 630 LALKMFCRMTIMNCSPDVLTYNTIIYGLIKEG 661
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L + L+ AL +F+ ++ P+L Y+ +IL G + A ++F EL+ G
Sbjct: 1005 INGLGKSRRLEEALSLFSEMKNR-GISPELYTYNALILHFGNAGMVDQAGKMFEELQFMG 1063
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTIL 204
L+P+ Y +I + + G D+A ++ M GC+P+ TF L
Sbjct: 1064 LEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTFAQL 1109
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L +LD A +++ +R +KPDL Y ++ G + + + E+
Sbjct: 303 LIDALCA---AGKLDKAKELYTKMRASS-HKPDLVTYITLMSKFGNYGDLETVKRFWSEM 358
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210
+ +G PD YT ++ + G +D+A + + M+ G P+ T+ LI L N
Sbjct: 359 EADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLN 414
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 96 LDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELK 155
L +L E+ R E A +FN + PD Y+ M+ K QI A +L E+
Sbjct: 479 LYSLAEMGRIRE---AKDIFNDIH-NCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEML 534
Query: 156 KEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
EG +PD V +I + G +D+A + + +K P +T+ ILI L G+
Sbjct: 535 SEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGK 592
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
+ SLYS L + +I A+++F ++ GL PD+ Y M+ Y + G IDKA +
Sbjct: 476 NASLYS-----LAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLL 530
Query: 187 ETMKASGCTPHKLTFTILIRNLENAG 212
M + GC P + LI L AG
Sbjct: 531 TEMLSEGCEPDIIVVNSLIDTLYKAG 556
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ ++ +I L K+ I A +L+ E+ P Y +IG L+ G ++AM+
Sbjct: 855 KPNIITHNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMK 914
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
+E M C P+ + ILI AG
Sbjct: 915 IFEEMPDYQCKPNCAIYNILINGFGKAGN 943
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R +D A + + E PD+ Y+ +I L ++ A+EL+ +++ P
Sbjct: 272 LGRAGRIDDAYGILKTMEDE-GCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKP 330
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
D Y ++ + G ++ + M+A G P +T+TIL+ L +G+
Sbjct: 331 DLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGK 382
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+L Y+ +I L +++ A ELF ++ G+ P Y I Y ++G +KA++T
Sbjct: 400 PNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDT 459
Query: 186 YETMKASGCTP 196
+E MK G P
Sbjct: 460 FEKMKKRGIMP 470
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
N + ALK+F K P++ Y+ ++ GK+K+I EL+ E+ G P+
Sbjct: 802 NITEAALKLF-VEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIIT 860
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ +I ++ I+KA++ Y + + +P T+ LI L AG E
Sbjct: 861 HNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSE 910
Score = 36.6 bits (83), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+T L ++ +L AL +F + KE P+ ++ ++ L KN + +A ++FC +
Sbjct: 584 ITGLGKEGKLLKALDLFGSM-KESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMN 642
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
PD Y +I ++ G A Y MK H +T+L +++ E+ +
Sbjct: 643 CSPDVLTYNTIIYGLIKEGRAGYAFWFYHQMKKFLSPDHVTLYTLLPGVVKDGRVEDAIK 702
Query: 219 AV 220
V
Sbjct: 703 IV 704
>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
[Vitis vinifera]
gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
Length = 890
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ E+ + D ALKVFN + + Y+PD+ Y+ + + +++ ++ +EG
Sbjct: 586 IGEMLKDGAFDHALKVFNHMVS-LGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEG 644
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210
+ PD YT +I Y ++G+ +A + + M +GC P +ILI+NL +
Sbjct: 645 ILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSH 696
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL +FN + KE +P++ Y+ +I L K ++ A ++ E+ ++GL P Y +I
Sbjct: 318 ALNLFNEM-KEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALI 376
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
Y + GMID A E + M+++ C P+ T+ LI L
Sbjct: 377 DGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGL 414
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ N+L+ A ++ + + E PD YS I L K ++ A LF +K +G+ +
Sbjct: 451 KVNDLESAYRLLSLMN-ENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANE 509
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+YT +I Y +VG ID A E M C P+ T+ +LI L
Sbjct: 510 VIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGL 554
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 113 KVFNFVRKEVW--------YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
K+ N V E++ PD Y+ +IL +NK + A E+F + ++G +
Sbjct: 206 KIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEV 265
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
YT +I + G I++A++ + M C P T+T+LI L +G
Sbjct: 266 SYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSG 313
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R +D A +VF + ++ + ++S Y+++I L + +I A +LF ++ ++ P
Sbjct: 241 RNKGVDNAYEVFLIMPQKGCQRNEVS-YTNLIHGLCEAGRINEALKLFADMTEDNCCPTV 299
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL--ENAGEE 214
R YT +I G +A+ + MK GC P+ T+T+LI L EN +E
Sbjct: 300 RTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDE 352
Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ ++ M+ K + AE ++ + GL PDT YT +I + + +D A E
Sbjct: 192 PNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEV 251
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ M GC +++++T LI L AG
Sbjct: 252 FLIMPQKGCQRNEVSYTNLIHGLCEAG 278
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
+L+ L E R NE ALK+F + ++ P + Y+ +I L + + A LF
Sbjct: 268 TNLIHGLCEAGRINE---ALKLFADMTEDNCC-PTVRTYTVLIYALSGSGRKVEALNLFN 323
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
E+K++G +P+ YT +I + +D+A + M G P +T+ LI
Sbjct: 324 EMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALI 376
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP + Y+ +I + K+ A ++F + G PD YT + Y GM+++ +
Sbjct: 576 KPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDD 635
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
M G P +T+T+LI G
Sbjct: 636 VIAKMNEEGILPDLVTYTVLIDGYARLG 663
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+ Y+ +I L K K++ A L ++ G+ P YT +IG L+ G D A++
Sbjct: 542 PNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKV 601
Query: 186 YETMKASGCTPHKLTFTILIR 206
+ M + G P T+T +
Sbjct: 602 FNHMVSLGYQPDVCTYTAFLH 622
>gi|357159762|ref|XP_003578551.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Brachypodium distachyon]
Length = 534
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 9/160 (5%)
Query: 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
A LL L++ R +E + V + PD+ LY+ ++ ++ + AE++F
Sbjct: 209 ASLLGALSKKRLASEAQALFDSYKSV-----FTPDVVLYTTLVHAWCRSGCLDKAEQVFA 263
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
E+++ G+ P+ YT +I + G + +A E M SGC P+ TF ++R AG
Sbjct: 264 EMQQAGIMPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFNAIMRAHVKAG 323
Query: 213 EEELVAAVRRDCIQYVEFPE----RFLEEVYQKHRKTQVD 248
E V V Q P+ FL E + ++ +D
Sbjct: 324 RSEQVLQVHNQMRQLGCDPDIITYNFLMETHCGKGQSNLD 363
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R LD A +VF + ++ P++ Y+ +I + + Q+ A+EL C++ G P+T
Sbjct: 251 RSGCLDKAEQVFAEM-QQAGIMPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNT 309
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
+ ++ +++ G ++ ++ + M+ GC P +T+ L+ G+ L AA++
Sbjct: 310 ATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCDPDIITYNFLMETHCGKGQSNLDAAMK 367
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 112 LKVFNFVRKEVWYKPDLSLYSDMI-LMLGKNK-QIAMAEELFCELKKEGLDPDTRVYTEM 169
L+V N +R ++ PD+ Y+ ++ GK + + A +L ++ +G PD + M
Sbjct: 329 LQVHNQMR-QLGCDPDIITYNFLMETHCGKGQSNLDAAMKLLLKMIAKGCTPDCHTFNPM 387
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
+ + + +G +D A + YE M+ C P+ +T+ +L++ ++V +++D
Sbjct: 388 LKLVVVLGNVDAAHKLYERMQELQCKPNVITYNLLMKLFGKDKSMDMVLRIKKD 441
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
+D A K++ + +E+ KP++ Y+ ++ + GK+K + M + ++ +G++P+
Sbjct: 395 GNVDAAHKLYERM-QELQCKPNVITYNLLMKLFGKDKSMDMVLRIKKDMDAQGVEPNVNT 453
Query: 166 YTEMIGVYLQVGMIDKAMETY-ETMKASGCTPHKLTFTILIRNLENAGE----EELV 217
Y +I + G +A T E ++ P K + +++ L AG+ EELV
Sbjct: 454 YGALIETFCGRGNWKRAYATLREMLEVKSLKPKKPVYDMVLVLLRKAGQLRKHEELV 510
>gi|326488077|dbj|BAJ89877.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 395
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 88/184 (47%), Gaps = 19/184 (10%)
Query: 67 VHAMKLAKSSSKLEEGFQSRICRLLKADL------LDTLTELRRQNELDLALKVFNFVRK 120
++ ++A + K+ E F+S + + + D+ +DTL R N+ L F +
Sbjct: 216 LNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLND---GLSYFKQLT- 271
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
++ +PDL Y+ +I LGK+ ++ A L+ +++K+G+ P+ Y +I + G
Sbjct: 272 DMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAA 331
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEEE---------LVAAVRRDCIQYVEFP 231
+A + YE + A G P+ T+ LIR +G E +V R + Y++ P
Sbjct: 332 EAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRPNSSTYMQLP 391
Query: 232 ERFL 235
+ L
Sbjct: 392 NQML 395
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 81/198 (40%), Gaps = 26/198 (13%)
Query: 45 LRDANKKPMWRSRVLSSEAIQAVHAM--KLAKSSSKLEEG-FQSRICRLLKADLLDTLTE 101
L D P+ R EA+ A H + K L+ G + + IC L+ DL+D E
Sbjct: 32 LDDLFLSPIIRHLCKHKEAL-AAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEE 90
Query: 102 LRRQ-----------------NELDLALKVFNFVR-----KEVWYKPDLSLYSDMILMLG 139
L + + + ++++ + ++ YK Y+ +I L
Sbjct: 91 LFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLV 150
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
K+K + A L+ +L EG P Y ++ L+ G I+ A ++ M GC P+
Sbjct: 151 KSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCA 210
Query: 200 TFTILIRNLENAGEEELV 217
+ IL+ AG+ E V
Sbjct: 211 IYNILLNGYRIAGDTEKV 228
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ L + LD A+ ++ + E + P Y ++ L K+ I AE LF E+ + G
Sbjct: 146 ISGLVKSKMLDEAINLYYQLMSE-GFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECG 204
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+P+ +Y ++ Y G +K E +E+M G P ++T++I L
Sbjct: 205 CEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTL 254
>gi|297834714|ref|XP_002885239.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
gi|297331079|gb|EFH61498.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
Length = 1429
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 64/135 (47%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+Q +LDLAL+++ ++ PD Y+ +I LGK + A L E+ G+ P
Sbjct: 414 KQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRSVEAAALMSEMLDVGIKPTL 473
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
+ Y+ +I Y + G ++A +T+ M SG P L +++++ L E + RD
Sbjct: 474 QTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWVLYRD 533
Query: 224 CIQYVEFPERFLEEV 238
I P L E+
Sbjct: 534 MISDGHTPSHSLYEL 548
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL+VF ++ W+ P+ + + ++ +LG+ Q ++A E+F + D +VY M+
Sbjct: 174 ALEVFEWLNLRHWHSPNARMVAAILGVLGRWNQESLAVEIFTRAEPTVGD-RVQVYNAMM 232
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
GVY + G KA E + M+ GC P ++F LI
Sbjct: 233 GVYSRSGKFSKAQELLDAMRQRGCVPDLISFNTLI 267
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 1/125 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L+ R + L+ A+KVF + +PDL Y+ MI + G+ A AE LF EL+ +G
Sbjct: 304 LSACSRDSNLEGAVKVFEDMEAHR-CQPDLWTYNAMISVYGRCGLAAEAERLFIELELKG 362
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
PD Y ++ + + +K E Y+ M+ G ++T+ +I G+ +L
Sbjct: 363 FSPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLAL 422
Query: 219 AVRRD 223
+ +D
Sbjct: 423 QLYKD 427
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P L Y +I GK K + AE+LF EL +GL D Y M+ + G KA +
Sbjct: 995 PKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKL 1054
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRRDCIQYVEFPERFLEEVYQK 241
+ MK +G P T +L+ + ++G E++++ ++ ++ P + + Y +
Sbjct: 1055 LQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKNTEVELTTLPYSSVIDAYLR 1114
Query: 242 HR 243
+
Sbjct: 1115 SK 1116
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 44/103 (42%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
+V KP L YS +I K + AE+ F + + G PD Y+ M+ V L+
Sbjct: 466 DVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETR 525
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
KA Y M + G TP + ++I L + V RD
Sbjct: 526 KAWVLYRDMISDGHTPSHSLYELMILGLMKENRSDDVQKTIRD 568
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM 189
+Y+D+I GK K AE + L++ G PD + + ++ Y + G ++A + TM
Sbjct: 754 MYTDIIEAYGKLKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAECGCYERARAIFNTM 813
Query: 190 KASGCTPHKLTFTILIRNLENAGE-EELVAAV 220
G +P + L+ L G EEL V
Sbjct: 814 MRDGPSPTVESINKLLHALCVDGRLEELYVVV 845
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 10/121 (8%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L R N+ LA+++F R E + +Y+ M+ + ++ + + A+EL +++ G
Sbjct: 198 LGVLGRWNQESLAVEIF--TRAEPTVGDRVQVYNAMMGVYSRSGKFSKAQELLDAMRQRG 255
Query: 159 LDPDTRVYTEMIGVYLQVGMI--DKAMETYETMKASGCTPHKLTFTILI------RNLEN 210
PD + +I L+ G + + +E + ++ SG P +T+ L+ NLE
Sbjct: 256 CVPDLISFNTLINARLKSGGLTPNLVVELLDMVRNSGLRPDAITYNTLLSACSRDSNLEG 315
Query: 211 A 211
A
Sbjct: 316 A 316
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
+L +++ + VR +PD Y+ ++ ++ + A ++F +++ PD Y
Sbjct: 279 NLVVELLDMVRNS-GLRPDAITYNTLLSACSRDSNLEGAVKVFEDMEAHRCQPDLWTYNA 337
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI------RNLENAGE 213
MI VY + G+ +A + ++ G +P +T+ L+ RN E E
Sbjct: 338 MISVYGRCGLAAEAERLFIELELKGFSPDAVTYNSLLYAFARERNTEKVKE 388
>gi|449530582|ref|XP_004172273.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Cucumis sativus]
Length = 505
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 1/125 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+TE R +L LA KVF+ + K + Y+ +I L + Q++ AE L +K+
Sbjct: 219 ITEYCRDGKLSLAFKVFDEISKR-GVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAH 277
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
++P TR + ++ G +DKA+ E +K G P +T+ ILI G +V+
Sbjct: 278 INPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVS 337
Query: 219 AVRRD 223
+ R+
Sbjct: 338 ELVRE 342
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K V P+L Y+ +I ++ ++++A ++F E+ K G+ + Y +IG + G +
Sbjct: 204 KLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQV 263
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
KA E MK + P TF +L+ L N G+
Sbjct: 264 SKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQ 297
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P L Y+ +I K ++ EL E++ G+ P YT ++ +++ I+KA E
Sbjct: 315 PTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEM 374
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ MK G P + T+ +LI L
Sbjct: 375 FHLMKRIGLVPDQHTYGVLIHGL 397
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ +Y+ +I +N I A+ +F + GL + +YT MI + + G E
Sbjct: 140 PNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFEL 199
Query: 186 YETMKASGCTPHKLTFTILI 205
Y+ MK G P+ T+ LI
Sbjct: 200 YQKMKLVGVLPNLYTYNSLI 219
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 105 QNELDLALKVFNFVRKEVWY-----KPDLSLYSDMILM--LGKNKQIAMAEELFCELKKE 157
N LDL K N R ++ + +YS I + +N ++ EL +++
Sbjct: 77 NNALDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFWITIKAFCENGNVSKGFELLAQMETM 136
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
G+ P+ +YT +I + G ID+A + M G ++ +TI+I G
Sbjct: 137 GVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKG 191
>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
Length = 432
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 99 LTELRRQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
+T L R L AL+VFN + ++ + P+L YS +I L K+ Q+ A++L + E
Sbjct: 209 ITGLCRARRLADALEVFNEMIDRD--FHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSE 266
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
G PD YT ++ + G +D A+ M + GC P +T+T++I L G
Sbjct: 267 GCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVG 321
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + ++LD A ++ + + E +PDL Y+ ++L ++ A L + +G P
Sbjct: 247 LCKSDQLDEAQQLLDRMVSE-GCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIP 305
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
D YT +I +VG +D A E + + A+ C+P+ +T++ LI
Sbjct: 306 DVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALI 349
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L++ L +L R +D A +F + +P+ Y+ ++ L K ++ A + E
Sbjct: 102 LINGLCKLGR---VDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVITEA 158
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
+K PD Y ++ Q+G +D+A+ T+ M G P ++F +I L A
Sbjct: 159 RKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRA 215
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+ L +L R +E AL F + +E Y P L ++ +I L + +++A A E+F E+
Sbjct: 173 LMAALFQLGRVDE---ALATFTQMTEE-GYVPTLVSFNAIITGLCRARRLADALEVFNEM 228
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
P+ Y+ +I + +D+A + + M + GC P + +T L+ AG
Sbjct: 229 IDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAG 286
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I L K ++ A E+F EL P+ Y+ +IG Y + +D E
Sbjct: 305 PDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVD---EG 361
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ M+ C P+ +T+ +I L E
Sbjct: 362 GKVMREMACRPNVVTYNTMIWGLSMVDRNE 391
>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
[Vitis vinifera]
Length = 811
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 91 LKADLLDTLTELRRQNELDLALKVFNFVR--KEVWYKPDLSLYSDMILMLGKNKQIAMAE 148
L D+L + L + D AL+VF +VR KE + S+ + +I +LGK +++ A
Sbjct: 126 LSLDVLGIVKGLGFYKKCDTALRVFEWVRNRKESELLLNGSIIAVIISILGKGGRVSAAA 185
Query: 149 ELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
L L K+G D D YT MI + G +A+ ++ M+ GC P +T+ +++
Sbjct: 186 SLLHNLCKDGFDVDVYAYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVIL 242
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PD Y+ ++ + GK+++ A E+ E++ G P Y +I Y + G+++ A+
Sbjct: 302 FSPDKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDAL 361
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
E M G P T+T L+ E AG+++ AAV+
Sbjct: 362 ELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDK--AAVQ 397
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 112 LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIG 171
+KVF + K PD+ ++ ++ + G+N + +F E+K+ G P+ + +I
Sbjct: 431 MKVFEDI-KTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLIS 489
Query: 172 VYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
Y + G D+AM Y+ M +G P ++ ++ L G
Sbjct: 490 SYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGG 530
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 14/155 (9%)
Query: 59 LSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFV 118
L EA + MKLA GF ++ LLD + RR E A++V +
Sbjct: 286 LYEEAAGVLKEMKLA--------GFSPD--KVTYNALLDVYGKSRRSKE---AMEVLQEM 332
Query: 119 RKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM 178
P + Y+ +I ++ + A EL ++ ++G+ PD YT ++ + + G
Sbjct: 333 EGN-GCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGK 391
Query: 179 IDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
A++ +E M+ GC P+ TF LI+ N G+
Sbjct: 392 DKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGK 426
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P L ++L+ K + E F EL++ G PD M+ +Y + M+ KA E
Sbjct: 583 EPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANE 642
Query: 185 TYETMKASGCTPHKLTFTILI------RNLENAGE---EELVAAVRRDCIQY 227
+ MK G TP T+ L+ N E + E E L +R D I Y
Sbjct: 643 ILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDIISY 694
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A+++F +R E KP++ ++ +I M G + ++F ++K PD + ++
Sbjct: 395 AVQIFEEMRNE-GCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLL 453
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
V+ Q GM + ++ MK +G P + TF LI + G + AV +
Sbjct: 454 SVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYK 505
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 67/151 (44%), Gaps = 13/151 (8%)
Query: 83 FQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNK 142
+ S I + LL+ EL+ Q V K + KPD+ Y+ ++ K
Sbjct: 344 YNSLISAYARDGLLEDALELKNQ-----------MVEKGI--KPDVFTYTTLLSGFEKAG 390
Query: 143 QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFT 202
+ A ++F E++ EG P+ + +I ++ G + M+ +E +K C+P +T+
Sbjct: 391 KDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWN 450
Query: 203 ILIRNLENAGEEELVAAVRRDCIQYVEFPER 233
L+ G + V+ V ++ + PER
Sbjct: 451 TLLSVFGQNGMDSEVSGVFKEMKRAGFVPER 481
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ P L+ Y+ ++ M ++ +EE+ E+ +G+ PD Y +I Y + G + A
Sbjct: 652 FTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDAS 711
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDC 224
M+ SG P +T+ I + A + V A+ C
Sbjct: 712 RVLSEMRESGPAPDIITYNTFIASY--AADSMFVEAIDVVC 750
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ Y+ +I +N ++ A + E+++ G PD Y I Y M +A++
Sbjct: 688 RPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEAID 747
Query: 185 TYETMKASGCTPHKLTFTILI 205
M GC P++ T+ ++
Sbjct: 748 VVCYMIKHGCKPNQSTYNSIV 768
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K PD Y+ +I + A + E+K G PD Y ++ VY +
Sbjct: 263 KSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYGKSRRS 322
Query: 180 DKAMETYETMKASGCTPHKLTFTILI 205
+AME + M+ +GC P +T+ LI
Sbjct: 323 KEAMEVLQEMEGNGCPPSIVTYNSLI 348
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 120 KEVWYKPDLSLYSDMILMLGK-----NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYL 174
+EV KP L Y+ ++ + GK NK + + + + K G+ PD+ Y +I
Sbjct: 227 EEVGCKPTLITYNVILNVYGKMGMPWNKMVGLVDRM----KSAGIAPDSYTYNTLISCCR 282
Query: 175 QVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ + ++A + MK +G +P K+T+ L+
Sbjct: 283 RGNLYEEAAGVLKEMKLAGFSPDKVTYNALL 313
>gi|356512664|ref|XP_003525037.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74750-like [Glycine max]
Length = 873
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 60/113 (53%), Gaps = 1/113 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
+D+A+ ++ + +E PD YS +I LGK +A A LFCE+ + G P+ Y
Sbjct: 463 IDVAMSMYKRM-QEAGLSPDTFTYSVIINCLGKAGNLAAAHWLFCEMVEHGCVPNLVTYN 521
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
MI + + + A++ Y M+ +G P K+T++I++ L + G E +V
Sbjct: 522 IMIALQAKARNYEMALKLYHDMQNAGFQPDKVTYSIVMEALGHCGYLEEAESV 574
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 58/111 (52%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L++ + +AL F+++R++ ++ D Y+ M+ +LG+ ++ +L ++ K+G P
Sbjct: 351 LKQLQDPSVALGFFDWLRRQPGFRHDGHTYTTMVGILGRARRFDSISKLLEQMVKDGCQP 410
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ Y +I Y + +A+ + M+ GC P ++T+ LI AG
Sbjct: 411 NVVTYNRLIHCYGCANYLKEALNVFNEMQEVGCEPDRVTYCTLIDIHAKAG 461
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
N L AL VFN + +EV +PD Y +I + K I +A ++ +++ GL PDT
Sbjct: 426 NYLKEALNVFNEM-QEVGCEPDRVTYCTLIDIHAKAGFIDVAMSMYKRMQEAGLSPDTFT 484
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y+ +I + G + A + M GC P+ +T+ I+I
Sbjct: 485 YSVIINCLGKAGNLAAAHWLFCEMVEHGCVPNLVTYNIMI 524
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
++ALK+++ + + ++PD YS ++ LG + AE +F E++++ PD VY
Sbjct: 534 EMALKLYHDM-QNAGFQPDKVTYSIVMEALGHCGYLEEAESVFVEMQQKNWVPDEPVYGL 592
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
++ ++ + G ++KA E Y+ M +G P+ T L+
Sbjct: 593 LVDLWGKAGNVEKASEWYQAMLNAGLLPNVPTCNSLL 629
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 42/90 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+L Y+ MI + K + MA +L+ +++ G PD Y+ ++ G +++A
Sbjct: 515 PNLVTYNIMIALQAKARNYEMALKLYHDMQNAGFQPDKVTYSIVMEALGHCGYLEEAESV 574
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ M+ P + + +L+ AG E
Sbjct: 575 FVEMQQKNWVPDEPVYGLLVDLWGKAGNVE 604
>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
Length = 795
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 6/118 (5%)
Query: 112 LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIG 171
+ VF+ +R Y PD+ ++ ++ + G+N + +F E+KK G P+ Y +I
Sbjct: 415 MAVFDDLR-SAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLIS 473
Query: 172 VYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE----EELVAA-VRRDC 224
Y + G+ D+AME Y+ M +G P T+ ++ L G E+L A V RDC
Sbjct: 474 SYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDC 531
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 14/152 (9%)
Query: 55 RSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKV 114
R R L EA Q MK A GF+ ++ LLD + R+ E LK
Sbjct: 266 RRRGLHREAAQVFDEMKAA--------GFEPD--KVTFNSLLDVYGKARKHEEAIGVLKR 315
Query: 115 FNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYL 174
+ P + Y+ +I K+ + A EL E++ G+ PD YT +I
Sbjct: 316 M----ENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLD 371
Query: 175 QVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
+VG ID A+ TY M +GC+P+ T+ LI+
Sbjct: 372 RVGKIDAALATYSEMVRNGCSPNLCTYNALIK 403
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD Y+ +I G+ Q+ A LF E+K G+ PD Y I Y+ M ++A++
Sbjct: 672 RPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANIMFEEAID 731
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ GC P++ TF +++ G
Sbjct: 732 LVRYLVTQGCRPNERTFNSILQGYSRHG 759
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 6/127 (4%)
Query: 103 RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
RR+ A +VF+ + K ++PD ++ ++ + GK ++ A + ++ G P
Sbjct: 266 RRRGLHREAAQVFDEM-KAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLKRMENAGCTPS 324
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAA--- 219
Y +I Y++ G++++A+E + M+ G P +T+T LI L+ G+ + A
Sbjct: 325 VVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVGKIDAALATYS 384
Query: 220 --VRRDC 224
VR C
Sbjct: 385 EMVRNGC 391
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ ++ M + E + E+K G+ PD Y +I Y + G + +A + MK
Sbjct: 643 YNSLMHMYSRLGDCEKCESILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMK 702
Query: 191 ASGCTPHKLTFTILIRN-LENAGEEELVAAVRRDCIQYVEFPERFLEEVYQKHRK 244
SG P +T+ I I++ + N EE + VR Q ER + Q + +
Sbjct: 703 CSGVKPDIVTYNIFIKSYVANIMFEEAIDLVRYLVTQGCRPNERTFNSILQGYSR 757
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 6/128 (4%)
Query: 89 RLLKADLLDTLT---ELRRQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQI 144
R +K D++ T L R ++D AL ++ VR P+L Y+ +I + G +
Sbjct: 354 RGMKPDVVTYTTLISGLDRVGKIDAALATYSEMVRNGC--SPNLCTYNALIKLHGVRGKF 411
Query: 145 AMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTIL 204
+F +L+ G PD + ++ V+ Q G+ + ++ MK +G P + T+ L
Sbjct: 412 TEMMAVFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSL 471
Query: 205 IRNLENAG 212
I + G
Sbjct: 472 ISSYSRCG 479
>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
Length = 1041
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ YS +I L +N ++ A EL E ++GL PD Y +I + + G I KA +
Sbjct: 619 PDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQL 678
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+E M G +P+ +T+ LI L AGE E
Sbjct: 679 HEYMCQKGISPNIITYNALINGLCKAGEIE 708
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+ +I L K +I A ELF + +GL + Y +I Y + G + KA
Sbjct: 689 PNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRL 748
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
++ M G P ++ LI G E ++ + +Q
Sbjct: 749 FDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQ 789
Score = 43.1 bits (100), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%)
Query: 122 VWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDK 181
V KPD Y++MI K + + ++L E+KK L P +I + G I+
Sbjct: 405 VGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIED 464
Query: 182 AMETYETMKASGCTPHKLTFTILIRN 207
A +E M + G P+ + +T LI+
Sbjct: 465 ASRVFEIMVSLGVKPNAVIYTTLIKG 490
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 10/145 (6%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R E+D A ++ + K+ D+ YS +I GK K+ A+ + E+ +GL P
Sbjct: 281 LCRAGEVDEAFELKKLMDKK-GLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKP 339
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE-------- 213
YT +I +++ G +A E M A G + T+ L++ + G+
Sbjct: 340 GHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALL 399
Query: 214 -EELVAAVRRDCIQYVEFPERFLEE 237
E ++ ++ D Y E +L+E
Sbjct: 400 NEMIMVGIKPDTQTYNNMIEGYLKE 424
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L++L + N+L+L + +N + E D+ Y+ +I + + L E++++G
Sbjct: 208 LSDLLKANKLELFWRFYNGML-EANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKG 266
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
P Y +IG + G +D+A E + M G T++ILI
Sbjct: 267 CSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILI 313
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD Y+ +I K + AE+ F +++K L P+ YT ++ Y G +
Sbjct: 827 KPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFA 886
Query: 185 TYETMKASGCTPHKLTFTILI 205
++ M A P +T++++I
Sbjct: 887 LFDEMIAKDIEPDGVTWSVMI 907
>gi|356556194|ref|XP_003546411.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Glycine max]
Length = 829
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
YKP Y+ M+ + GK A + E++ PD+ Y E+ Y++ G +D+ M
Sbjct: 317 YKPGTVTYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSVTYNELAATYVRAGFLDEGM 376
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+TM + G P+ +T+T +I AG E+
Sbjct: 377 AVIDTMTSKGVMPNAITYTTVIDAYGKAGRED 408
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
D AL++F+ + K++ P++ Y+ ++ MLGK + ++ CE+K G P+ +
Sbjct: 408 DDALRLFSLM-KDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNT 466
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
M+ V + G + + MK G P K TF LI G E
Sbjct: 467 MLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISAYARCGSE 512
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 47/89 (52%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
YKPDL + + M+ M +NK + A E+ + + GL P+ Y ++ +Y++ G KA
Sbjct: 632 YKPDLVVINSMLSMFARNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREGECWKAE 691
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAG 212
E + ++ SG P +++ +I+ G
Sbjct: 692 EVLKGIQNSGPEPDVVSYNTVIKGFCRKG 720
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 8/134 (5%)
Query: 78 KLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSD---- 133
+L + F S LL+AD L L + AL +F + + + D +L D
Sbjct: 126 ELNDFFNSVKFELLEADFPSLLKALDLSGNWERALLLFEW--GWLHFGSDQNLRLDNQVV 183
Query: 134 --MILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA 191
M+ +LG+ Q ++A +LF + E D R YT ++ Y + G +A++ + MK
Sbjct: 184 ELMVRILGRESQHSIASKLFDLIPVEKYSLDVRAYTTILHSYARTGKYKRAIDLFGKMKE 243
Query: 192 SGCTPHKLTFTILI 205
G P +T+ +++
Sbjct: 244 IGLDPTLVTYNVML 257
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R+++ +A K+F+ + E Y D+ Y+ ++ + + A +LF ++K+ GLDP
Sbjct: 190 LGRESQHSIASKLFDLIPVEK-YSLDVRAYTTILHSYARTGKYKRAIDLFGKMKEIGLDP 248
Query: 162 DTRVYTEMIGVYLQVG-MIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
Y M+ VY ++G D+ +E + M++ G + T + +I G E ++
Sbjct: 249 TLVTYNVMLDVYGKMGRSWDRILELLDEMRSKGLELDEFTCSTVI---SACGREGMLDEA 305
Query: 221 RR 222
R+
Sbjct: 306 RK 307
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 132 SDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA 191
S +I G+ + A + ELK G P T Y M+ V+ + G+ +A+ + M+
Sbjct: 290 STVISACGREGMLDEARKFLAELKFNGYKPGTVTYNSMLQVFGKAGIYTEALSILKEMED 349
Query: 192 SGCTPHKLTFTILIRNLENAG 212
+ C P +T+ L AG
Sbjct: 350 NNCPPDSVTYNELAATYVRAG 370
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ Y+ +I + + A + E+ +G+ P Y + Y + + D+A E
Sbjct: 703 EPDVVSYNTVIKGFCRKGLMQEAIGVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANE 762
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
M C P +LT+ IL+ AG+ E
Sbjct: 763 VIRFMIEHNCRPSELTYKILVDGYCKAGKYE 793
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 45/98 (45%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+ + ++ M+ + + + ++ E+K G +PD + +I Y + G + +
Sbjct: 459 PNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISAYARCGSEVDSAKM 518
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
Y M SG TP T+ L+ L G+ + +V +D
Sbjct: 519 YGEMVKSGFTPCVTTYNALLNALARRGDWKAAESVIQD 556
>gi|326513116|dbj|BAK06798.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 489
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ +I LG Q+ A +LF E+ KEG P Y +I V + G ++ A+
Sbjct: 269 KPDIVSYTTIIHGLGVAGQLDKARKLFDEMSKEGCTPSVATYNALIQVICKKGNVEDAVT 328
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
++ M P+ +T+T+LIR L + G+
Sbjct: 329 VFDDMVRKDYMPNVVTYTVLIRGLCHVGK 357
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
+LD A K+F+ + KE P ++ Y+ +I ++ K + A +F ++ ++ P+
Sbjct: 286 GQLDKARKLFDEMSKE-GCTPSVATYNALIQVICKKGNVEDAVTVFDDMVRKDYMPNVVT 344
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
YT +I VG ID+AM+ E MK GC P T+ +LIR GE E
Sbjct: 345 YTVLIRGLCHVGKIDRAMKLMERMKGEGCEPVVQTYNVLIRYSFEEGEIE 394
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
Q D+A+++F + + DL L++ ++ LGK++ + A L L++ PD
Sbjct: 140 QRRPDIAVRLFLSLHRSHRVVQDLPLFNSLLDALGKSRHASKAASLVRALERR-FPPDVV 198
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
Y + + + +A++ M SG TP K T+ I+++ AG+
Sbjct: 199 TYNTLADGWCRAKDTSRALDLLRQMAESGVTPTKTTYNIILKGFFRAGQ 247
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 5/117 (4%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD-----PDTRVYTEMIGVYLQ 175
E P + Y+ ++ + QI A F ++KK G PD YT +I
Sbjct: 225 ESGVTPTKTTYNIILKGFFRAGQIQHAWNFFLQMKKRGAKDESCKPDIVSYTTIIHGLGV 284
Query: 176 VGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
G +DKA + ++ M GCTP T+ LI+ + G E V D ++ P
Sbjct: 285 AGQLDKARKLFDEMSKEGCTPSVATYNALIQVICKKGNVEDAVTVFDDMVRKDYMPN 341
>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Brachypodium distachyon]
Length = 718
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 5/131 (3%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R E+D A ++ +R E +P L ++ ++ L K ++ A ++F E+ +EGL PD
Sbjct: 202 RAGEVDAAERLVGVMR-EGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDG 260
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE----LVAA 219
Y ++ Y + G + +A+ + M G P +TFT LI + AG E LV
Sbjct: 261 VSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQ 320
Query: 220 VRRDCIQYVEF 230
+R ++ EF
Sbjct: 321 MRERGLRMNEF 331
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD YS +I L + +++ A ELF ++ + GL PD YT +I + + G + KA+
Sbjct: 433 PDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSL 492
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
++ M G P +T+++LI L +
Sbjct: 493 HDEMIKKGVLPDVVTYSVLIDGLSKS 518
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y P L Y+ ++L L + + A L + ++G+ P+ Y ++ G ++A+
Sbjct: 116 YAPSLLAYNAVLLAL-SDASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEAL 174
Query: 184 ETY-ETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRRDCIQ 226
+ M+ +GC P+ +T+ L+ AGE E LV +R ++
Sbjct: 175 GVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVR 222
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
+ L + ++ A K+F+ + +E PD Y+ ++ K + A +F E+ ++
Sbjct: 231 VVNGLCKAGRMEDARKMFDEMARE-GLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQK 289
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
G+ PD +T +I + G +++A+ M+ G ++ TFT LI
Sbjct: 290 GVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALI 337
Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ YS ++ K A EL ++ K+G+ PD Y+ +I + + A E
Sbjct: 397 KPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACE 456
Query: 185 TYETMKASGCTPHKLTFTILI 205
+E M G P + T+T LI
Sbjct: 457 LFEKMLQLGLQPDEFTYTTLI 477
>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
Length = 382
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 99 LTELRRQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
+T L R L AL+VFN + ++ + P+L YS +I L K+ Q+ A++L + E
Sbjct: 159 ITGLCRARRLADALEVFNEMIDRD--FHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSE 216
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
G PD YT ++ + G +D A+ M + GC P +T+T++I L G
Sbjct: 217 GCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVG 271
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + ++LD A ++ + + E +PDL Y+ ++L ++ A L + +G P
Sbjct: 197 LCKSDQLDEAQQLLDRMVSE-GCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIP 255
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
D YT +I +VG +D A E + + A+ C+P+ +T++ LI
Sbjct: 256 DVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALI 299
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L++ L +L R +D A +F + +P+ Y+ ++ L K ++ A + E
Sbjct: 52 LINGLCKLGR---VDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEA 108
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
+K PD Y ++ Q+G +D+A+ T+ M G P ++F +I L A
Sbjct: 109 RKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRA 165
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+ L +L R +E AL F + +E Y P L ++ +I L + +++A A E+F E+
Sbjct: 123 LMAALFQLGRVDE---ALATFTQMTEE-GYVPTLVSFNAIITGLCRARRLADALEVFNEM 178
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
P+ Y+ +I + +D+A + + M + GC P + +T L+ AG
Sbjct: 179 IDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAG 236
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I L K ++ A E+F EL P+ Y+ +IG Y + +D E
Sbjct: 255 PDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVD---EG 311
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ M+ C P+ +T+ +I L E
Sbjct: 312 GKVMREMACRPNVVTYNTMIWGLSMVDRNE 341
>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
Length = 602
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L Q +D A+ + + + K KPD+ Y+ ++ L Q AEEL + + G
Sbjct: 349 INGLCEQRNVDGAMGLLSKM-KSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNG 407
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
PD + +IG Q G++ A+E ++ M GCTP+ +T++ +I L A
Sbjct: 408 CLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKA 460
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 7/130 (5%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ L + +LD AL++FN + + + PD +Y + L + I A + +L+ G
Sbjct: 454 ISGLAKATKLDQALELFNEMGHK-GFNPD-KIYQLLAECLNDDDTIEEAIQTVRKLQDSG 511
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE-----NAGE 213
+ P T +Y ++ + G + A++ M +SGC P LT+ ILI L N
Sbjct: 512 ISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEAR 571
Query: 214 EELVAAVRRD 223
E L+ RD
Sbjct: 572 ELLIKLCSRD 581
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+ YS +I L K ++ A ELF E+ +G +PD ++Y + I++A++T
Sbjct: 445 PNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPD-KIYQLLAECLNDDDTIEEAIQT 503
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELV 217
++ SG +PH + + ++ L G+ E
Sbjct: 504 VRKLQDSGISPHTVLYNAILLGLCRNGKTEFA 535
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P+ Y+ +I L + Q+ A + ++ G PD Y ++ + +AME
Sbjct: 164 QPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAME 223
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
+ M+A GCTP+ +T+ +L+ + G+
Sbjct: 224 LIDLMRAEGCTPNNVTYNVLMDGMCGEGD 252
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ ++ K + A EL ++ EG P+ Y ++ G +D A+E
Sbjct: 200 PDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALEL 259
Query: 186 YETMKASGCTPHKLTFTILIRNLENA-----GEEELVAAVRRDC 224
+ + GC P + + +++ L +A +E + +R +C
Sbjct: 260 LRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENC 303
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP Y+ ++ L ++ A+EL E+ +E P+ + +I + G++ +A++
Sbjct: 269 KPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQ 328
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
E M GCT + +T+ +I L
Sbjct: 329 LLEKMSKHGCTANIVTYNAIINGL 352
>gi|255583688|ref|XP_002532598.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527686|gb|EEF29795.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 553
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A VF +R++ Y PDL Y+ M+ +A AE F LK++GL+P+ Y +I
Sbjct: 369 ARTVFKSMRRDR-YTPDLCSYTTMLSAYVNASDMAGAENFFNRLKQDGLEPNVVTYGALI 427
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y + +DK ME YE M+ G ++ FT ++
Sbjct: 428 KGYAKTNNLDKMMEKYEEMQLRGVKANQTIFTTIM 462
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ Y+ +I GK ++ A +F E+ G+ P + Y ++ + GM+++A
Sbjct: 312 QPDVISYALLINAYGKARREDEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQART 371
Query: 185 TYETMKASGCTPHKLTFTILIRNLEN----AGEEELVAAVRRDCIQ 226
+++M+ TP ++T ++ N AG E +++D ++
Sbjct: 372 VFKSMRRDRYTPDLCSYTTMLSAYVNASDMAGAENFFNRLKQDGLE 417
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L++ + RR++E AL VF + + +P Y+ ++ + + A +F +
Sbjct: 321 LINAYGKARREDE---ALAVFEEML-DAGVRPTHKAYNILLDAFAISGMVEQARTVFKSM 376
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
+++ PD YT M+ Y+ + A + +K G P+ +T+ LI+
Sbjct: 377 RRDRYTPDLCSYTTMLSAYVNASDMAGAENFFNRLKQDGLEPNVVTYGALIK 428
>gi|168024876|ref|XP_001764961.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683770|gb|EDQ70177.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 743
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
DL+ Y+ +I GKN IA E LF +++EG+ PD Y +I Y D+A+ +
Sbjct: 639 DLASYNILINTYGKNYMIAEMETLFRTMQEEGVVPDRWTYNTIIRTYGFADYPDRAVYWF 698
Query: 187 ETMKASGCTPHKLTFTILIRNLENAG 212
+ M+ +G +P ++T+ IL+ E AG
Sbjct: 699 KAMQDAGISPDRVTYMILVSTFERAG 724
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 14/148 (9%)
Query: 59 LSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFV 118
L EA++ AM+ A + K E +S IC A++ D + ++ ++
Sbjct: 341 LPKEALRIFLAMRKAGMAPK-EYMCRSLICTFRDAEMFDGAKSVFKEMQV---------- 389
Query: 119 RKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM 178
P L MI + G N + AE LF L+ D Y MI VY++ M
Sbjct: 390 ---AGVTPSLESSCTMIYVYGMNGDVKEAEGLFHSLRSSVKRLDIFAYNVMINVYMRCDM 446
Query: 179 IDKAMETYETMKASGCTPHKLTFTILIR 206
+ A++ Y+ M+ P T+ ++R
Sbjct: 447 PEGAIKVYKLMEEDHLLPDAYTYHSMLR 474
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 52/132 (39%), Gaps = 15/132 (11%)
Query: 82 GFQSRICRLLKADLLDTLTEL-RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK 140
G+ S I KA L D L + E DL PD YS MI G+
Sbjct: 188 GYNSMITAYGKACLYDKAARLVEKMREEDLV--------------PDSITYSCMIGACGR 233
Query: 141 NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT 200
++ A F E+K+ + P + + +I +Y + ++ + MK GC P T
Sbjct: 234 VGKLKEALSWFAEMKRLEIKPASSNFNTLISLYGKAKDVEGIVRVITEMKKYGCKPDWQT 293
Query: 201 FTILIRNLENAG 212
+R + AG
Sbjct: 294 LDAAVRAYDRAG 305
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y L Y+ ++ GK Q+ ++ ++ G+ D Y +I Y + MI +
Sbjct: 601 YGSSLEAYNSILDAYGKAGQMEKVSDVLARMENSGMRMDLASYNILINTYGKNYMIAEME 660
Query: 184 ETYETMKASGCTPHKLTFTILIR 206
+ TM+ G P + T+ +IR
Sbjct: 661 TLFRTMQEEGVVPDRWTYNTIIR 683
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 92 KADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELF 151
+ + L L +Q +++ A ++ + V +E L Y+ MI GK A L
Sbjct: 151 RDNWLKQLNTYGQQGKIEEAERIMDTV-EESGMSLGLVGYNSMITAYGKACLYDKAARLV 209
Query: 152 CELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
++++E L PD+ Y+ MIG +VG + +A+ + MK P F LI
Sbjct: 210 EKMREEDLVPDSITYSCMIGACGRVGKLKEALSWFAEMKRLEIKPASSNFNTLI 263
>gi|15221411|ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
gi|75194055|sp|Q9S7Q2.1|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g74850, chloroplastic; AltName: Full=Protein PLASTID
TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor
gi|5882738|gb|AAD55291.1|AC008263_22 Contains 3 PF|01535 DUF17 domains [Arabidopsis thaliana]
gi|12323908|gb|AAG51934.1|AC013258_28 hypothetical protein; 81052-84129 [Arabidopsis thaliana]
gi|332197518|gb|AEE35639.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
Length = 862
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL+ YS ++ GK +++ +L E+ G PD Y ++ Y + G I +AM
Sbjct: 280 PDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGV 339
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ M+A+GCTP+ T+++L+ +G
Sbjct: 340 FHQMQAAGCTPNANTYSVLLNLFGQSG 366
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 67/138 (48%), Gaps = 5/138 (3%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
D E + + +L++F ++++++W KP+ +Y+ MI +LG+ + E+F E
Sbjct: 107 DFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDE 166
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ +G+ YT +I Y + G + ++E + MK +P LT+ +I G
Sbjct: 167 MPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGL 226
Query: 214 E-----ELVAAVRRDCIQ 226
+ L A +R + IQ
Sbjct: 227 DWEGLLGLFAEMRHEGIQ 244
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 48/101 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD++ Y+ ++ K+ I A +F +++ G P+ Y+ ++ ++ Q G D +
Sbjct: 315 PDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQL 374
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
+ MK+S P T+ ILI G + V + D ++
Sbjct: 375 FLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVE 415
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ Y +I GK A ++ + + P ++ YT +I + Q + ++A+
Sbjct: 419 EPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALV 478
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ TM G P TF L+ + G
Sbjct: 479 AFNTMHEVGSNPSIETFHSLLYSFARGG 506
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
LF E++ EG+ PD Y ++ G+ D+A + TM G P T++ L+
Sbjct: 234 LFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLV 289
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 37/80 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+ + YS ++ + G++ + +LF E+K DPD Y +I V+ + G + +
Sbjct: 350 PNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTL 409
Query: 186 YETMKASGCTPHKLTFTILI 205
+ M P T+ +I
Sbjct: 410 FHDMVEENIEPDMETYEGII 429
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD + Y+ +I + G+ LF ++ +E ++PD Y +I + G+ + A +
Sbjct: 385 PDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKI 444
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG--EEELVA 218
+ M A+ P +T +I A EE LVA
Sbjct: 445 LQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVA 479
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL FN + EV P + + ++ + + +E + L G+ + + I
Sbjct: 476 ALVAFNTMH-EVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQI 534
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y Q G ++A++TY M+ S C P + T ++
Sbjct: 535 EAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVL 569
>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 882
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 68/140 (48%), Gaps = 7/140 (5%)
Query: 95 LLDTLTE-LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
L TL L R+ ++ AL + + V+ +PD+ LY+ I GK + MA + F E
Sbjct: 216 LFTTLVRALAREGQVADALALVDEVKGSCL-EPDIVLYNVCIDCFGKAGNVDMAWKFFHE 274
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
LK +GL PD YT MI V + G + +A E + M+A P + +I +AG
Sbjct: 275 LKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGR 334
Query: 214 EE----LVAAVR-RDCIQYV 228
E L+ +R R CI V
Sbjct: 335 FEDAYKLLERLRERGCIPSV 354
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LLD L + NE AL F + KE+ P+ YS +I L + ++ A + ++
Sbjct: 709 LLDALVKAEEINE---ALVCFQSM-KEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDM 764
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
+K+GL P+ YT MI +VG I A +E KA+G P +F LI + NA
Sbjct: 765 QKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNA 821
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 10/129 (7%)
Query: 95 LLDTLTELRR-QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
L+ L E RR + L+L ++ +EV Y+ + L++ ++ L + Q+A A L E
Sbjct: 185 LIGALAEARRPERALELLRQM-----QEVGYEVGVHLFTTLVRALAREGQVADALALVDE 239
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+K L+PD +Y I + + G +D A + + +KA G P +++T +I L AG
Sbjct: 240 VKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGR 299
Query: 214 ----EELVA 218
EEL A
Sbjct: 300 LGEAEELFA 308
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ +D+A K F+ ++ + KPD Y+ MI +L K ++ AEELF +++ E P
Sbjct: 261 KAGNVDMAWKFFHELKAQ-GLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCA 319
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
Y MI Y G + A + E ++ GC P ++F ++ L
Sbjct: 320 YAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCL 364
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
++ LYS +I GK +I A + E+ K+GL P+ + ++ ++ I++A+ +
Sbjct: 667 NVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCF 726
Query: 187 ETMKASGCTPHKLTFTILIRNL 208
++MK C P+ T++ILI L
Sbjct: 727 QSMKEMKCPPNTYTYSILINGL 748
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 4/129 (3%)
Query: 83 FQSRICRLLKADL--LDTLTE-LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
F+ I R K DL L+T + + + E++ +F +R + PD+ YS +I L
Sbjct: 516 FKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRS-YGFLPDVRSYSILIHGLT 574
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
K Q +F +K++G D R Y ++ + + G + KA E E MK P
Sbjct: 575 KAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVA 634
Query: 200 TFTILIRNL 208
T+ ++ L
Sbjct: 635 TYGAIVDGL 643
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE +P ++ Y ++ L K ++ A LF E K +G++ + +Y+ +I + +VG I
Sbjct: 625 KEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRI 684
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
D+A E M G TP+ T+ L+ L A E
Sbjct: 685 DEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEE 718
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+L + M+ L K +++ A ++F + G +PD Y +I + G +D+A
Sbjct: 421 PNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRL 480
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE-----LVAAVRRDC 224
+E M +G + + +T LIRN G +E +RR C
Sbjct: 481 FEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGC 524
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 90 LLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEE 149
+L + L+D ++ R +E L L+ ++K + P++ ++ ++ L K ++I A
Sbjct: 669 VLYSSLIDGFGKVGRIDEAYLILE--EMMKKGL--TPNVYTWNSLLDALVKAEEINEALV 724
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209
F +K+ P+T Y+ +I +V +KA ++ M+ G P+ +T+T +I L
Sbjct: 725 CFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLA 784
Query: 210 NAGE 213
G
Sbjct: 785 KVGN 788
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 4/138 (2%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
++D L + R+ E A K+F + PD Y +I LGK Q+ A LF ++
Sbjct: 429 MVDRLCKARKLEE---AYKIFESASQR-GCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKM 484
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
G + + VYT +I + G + + ++ + GC P + + AGE
Sbjct: 485 LDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEV 544
Query: 215 ELVAAVRRDCIQYVEFPE 232
E + D Y P+
Sbjct: 545 EKGRMIFEDIRSYGFLPD 562
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/144 (20%), Positives = 64/144 (44%), Gaps = 7/144 (4%)
Query: 76 SSKLEEGFQ------SRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLS 129
+ KLEE ++ R C + L ++ ++D A ++F + + + +
Sbjct: 436 ARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKML-DAGHNANPV 494
Query: 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM 189
+Y+ +I + + ++F EL + G PD + + + G ++K +E +
Sbjct: 495 VYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDI 554
Query: 190 KASGCTPHKLTFTILIRNLENAGE 213
++ G P +++ILI L AG+
Sbjct: 555 RSYGFLPDVRSYSILIHGLTKAGQ 578
>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
Length = 581
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 56/120 (46%)
Query: 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
AD L L R E AL++F P + Y+ +I L K+ ++ ELF
Sbjct: 46 ADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFE 105
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
EL K G PD Y +I + G +++A + M + GC P+ +T+++LI L G
Sbjct: 106 ELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVG 165
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y P++ Y+ ++ L K ++ A + + +G+ PD Y+ ++ + + +D+A+
Sbjct: 254 YVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEAL 313
Query: 184 ETYETMKASGCTPHKLTFTILIRNL 208
E M + GCTP+ +TF +I L
Sbjct: 314 ELLHGMASRGCTPNVVTFNSIIDGL 338
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 77/183 (42%), Gaps = 30/183 (16%)
Query: 56 SRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVF 115
SRV EA++ +H M ++ + F S I L K+D R +AL+V+
Sbjct: 307 SRV--DEALELLHGMA-SRGCTPNVVTFNSIIDGLCKSD--------RSGEAFQIALQVY 355
Query: 116 NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175
N R V PD ++ +I K A LF E+ + + PD + +I +
Sbjct: 356 N--RMLV---PDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCK 410
Query: 176 VGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFL 235
G ++ A + + M G P+ +T+ +L+ L +G +E P FL
Sbjct: 411 AGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGR--------------IEEPCEFL 456
Query: 236 EEV 238
EE+
Sbjct: 457 EEM 459
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 8/106 (7%)
Query: 111 ALKVFNFVRKEVWY--------KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
A K NF + + +PD+ + +I L K Q+ A ++ + G+ P+
Sbjct: 373 ACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPN 432
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
Y ++ + G I++ E E M +SGC P +T+ L+ L
Sbjct: 433 VVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYAL 478
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 3/112 (2%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L + NEL +++F + K + PD+ Y+ +I L K + A L + G
Sbjct: 88 INGLCKSNELGAGMELFEELVKR-GHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRG 146
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCT--PHKLTFTILIRNL 208
P+ Y+ +I +VG ID+A E + M C P+ +T+ + L
Sbjct: 147 CVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGL 198
>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 504
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 78/150 (52%), Gaps = 4/150 (2%)
Query: 77 SKLEEGFQSRICRLLKADLLD---TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSD 133
S+ EE ++ I R L D++ + L + LD A ++F F+ + + PD+ YS
Sbjct: 273 SEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCF-PDVVTYSI 331
Query: 134 MILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG 193
+I K+K++ +LFCE+ + G+ +T YT +I Y + G ++ A E ++ M G
Sbjct: 332 LINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCG 391
Query: 194 CTPHKLTFTILIRNLENAGEEELVAAVRRD 223
P+ +T+ +L+ L + G+ E + D
Sbjct: 392 VPPNIITYNVLLHGLCDNGKIEKALVILAD 421
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 119 RKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM 178
++E++ PD+ ++ +I K +I+ AEEL+ E+ + LDPD Y+ +I
Sbjct: 249 KREIY--PDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSR 306
Query: 179 IDKAMETYETMKASGCTPHKLTFTILIRN 207
+D+A + + M + GC P +T++ILI
Sbjct: 307 LDEAEQMFGFMVSKGCFPDVVTYSILING 335
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E+ Y+P++ +Y+ +I L K+KQ+ A +L ++ +G+ PD Y +I G D
Sbjct: 179 EMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWD 238
Query: 181 KAMETYETMKASGCTPHKLTFTILI 205
A M P TF LI
Sbjct: 239 DATRMVSCMTKREIYPDVFTFNALI 263
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R +L++A ++F ++ P++ Y+ ++ L N +I A + +++K G+D D
Sbjct: 373 RAGKLNVAEEIFKWM-VFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDADI 431
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
Y +I + G + A + Y ++ G TP T+T ++ L G
Sbjct: 432 VTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWTYTAMMLGLYKKG 480
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE-MIGVYLQVGMIDKAMET 185
D+ Y+ +I + K ++A A +L+C L +GL PD YT M+G+Y + G+ +A
Sbjct: 430 DIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWTYTAMMLGLY-KKGLRGEADAL 488
Query: 186 YETMKASGCTPHK 198
+ MK G P++
Sbjct: 489 FRKMKEDGILPNE 501
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 8/131 (6%)
Query: 79 LEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEV-WYKPDLSLYSDMILM 137
+E G++ + ++ ++D L + ++D AL + N R EV +PD Y+ +I
Sbjct: 178 VEMGYEPNV--VIYNTIIDGLC---KSKQVDNALDLLN--RMEVDGIRPDAVTYNSLISG 230
Query: 138 LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH 197
L + + A + + K + PD + +I ++ G I +A E YE M P
Sbjct: 231 LCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPD 290
Query: 198 KLTFTILIRNL 208
+T+++LI L
Sbjct: 291 IVTYSLLIYGL 301
>gi|115473337|ref|NP_001060267.1| Os07g0615000 [Oryza sativa Japonica Group]
gi|113611803|dbj|BAF22181.1| Os07g0615000 [Oryza sativa Japonica Group]
Length = 259
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 58/123 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD +Y+ +I K + A E+F E+K G+ PDT VYT +IG Y +V +D A
Sbjct: 128 PDRIMYTSLIACYCKRSNMKKAMEIFREMKNGGISPDTFVYTCLIGGYTKVRAMDFAELL 187
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVYQKHRKT 245
E M+ G TP +T+T LI G+E+ + IQ P+ L +
Sbjct: 188 MEEMETKGLTPTVVTYTDLIIGYLKTGDEKSAYRTYHNMIQRGITPDAKLSCILDLGNDA 247
Query: 246 QVD 248
VD
Sbjct: 248 DVD 250
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+ +I L + ++ L + EGL PD +YT +I Y + + KAME
Sbjct: 93 PNIFTYTSLINGLCHDDRLPEMTPLLKNMILEGLTPDRIMYTSLIACYCKRSNMKKAMEI 152
Query: 186 YETMKASGCTPHKLTFTILI 205
+ MK G +P +T LI
Sbjct: 153 FREMKNGGISPDTFVYTCLI 172
>gi|255574497|ref|XP_002528160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532417|gb|EEF34211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 569
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
+ALK+FN +R + KP++ Y+ ++ + AEE+F +L+++G +PD Y +
Sbjct: 271 MALKLFNEMRSQKC-KPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHEPDVYAYNAL 329
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+ Y + G A E + M+ GC P + ++ I++ G E AV
Sbjct: 330 MEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRGGLHEDAQAV 380
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 63/137 (45%), Gaps = 4/137 (2%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
DL++ + +LR + DL L + ++ ++ D+ +++ +I G+ MAE + E
Sbjct: 114 DLINVVVQLRLNKKWDLILLICQWILYRSSFQSDVMIFNLVIDAYGRKSLYKMAETTYFE 173
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
L + P Y ++ Y G+++KA + M+ G P + + I L AG
Sbjct: 174 LIEARCIPTEDTYALLLKAYCTSGLLEKAEAIFAEMRKYGLPPSAIVYNAYIDGLMKAGN 233
Query: 214 E----ELVAAVRRDCIQ 226
E+ ++RDC Q
Sbjct: 234 PQRAVEIFQRMKRDCCQ 250
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y D+S Y+ +I + G+ E LF L + L PD +T +G Y + + K +
Sbjct: 459 YATDISTYNILINIYGRAGFFEKMEGLFQSLAAKNLKPDVVTWTSRLGAYSRKKLYTKCL 518
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
E +E M +GC P T +L+ + + + E V V R
Sbjct: 519 EIFEEMIDAGCHPDGRTAKVLLSSCSSEDQIEQVTTVIR 557
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A+++F ++++ +P Y+ +I + GK Q MA +LF E++ + P+ YT ++
Sbjct: 237 AVEIFQRMKRDCC-QPSTETYTLLINLHGKASQSYMALKLFNEMRSQKCKPNICTYTALV 295
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ + G+ +KA E +E ++ G P + L+ AG
Sbjct: 296 NAFAREGLCEKAEEIFEQLQEDGHEPDVYAYNALMEAYSRAG 337
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E ++PD+ Y+ ++ + A E+F ++ G +PD Y M+ Y + G+
Sbjct: 315 QEDGHEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRGGLH 374
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ A +E MK G TP + +L+ AG+
Sbjct: 375 EDAQAVFEEMKRLGITPTMKSHMLLLSAYSKAGD 408
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 129 SLYSDMILMLGKNK--QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
++ S M+L+ +K +A E++ EL + GL+PDT V M+ +Y ++G K E
Sbjct: 392 TMKSHMLLLSAYSKAGDVAKCEDIVNELHESGLEPDTFVLNSMLNLYGRLGQFGKMEEVL 451
Query: 187 ETMKASGCTPHKLTFTILIRNLENAG 212
M++ T+ ILI AG
Sbjct: 452 TAMESGPYATDISTYNILINIYGRAG 477
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P +Y+ I L K A E+F +K++ P T YT +I ++ + A++
Sbjct: 216 PSAIVYNAYIDGLMKAGNPQRAVEIFQRMKRDCCQPSTETYTLLINLHGKASQSYMALKL 275
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG----EEELVAAVRRDCIQYVEFPERFLEEVYQK 241
+ M++ C P+ T+T L+ G EE+ ++ D + + L E Y +
Sbjct: 276 FNEMRSQKCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHEPDVYAYNALMEAYSR 335
>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Cucumis sativus]
gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Cucumis sativus]
Length = 908
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+ +LD+A FN + E + Y+ MI K ++ MAE LF E+ +GL P
Sbjct: 412 RRAKLDVAFYYFNKM-IECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTV 470
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
YT +I Y + G++ KA + Y M G P+ +TFT LI L
Sbjct: 471 ATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGL 515
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 127 DLSLYSDMIL-MLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
DL Y+ +I L +N +I EL E+ +G+ PD +YT +I +++ G + KA E
Sbjct: 644 DLVSYAVLISGALNQNDRILF--ELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEF 701
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ M G P+ +T+T L+ L AG
Sbjct: 702 WYIMIGEGYVPNSVTYTALVNGLFKAG 728
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Query: 91 LKADLLDTLT---ELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMA 147
LKADL+ T L R E ++ +++ + + E+ Y P + S +I L K I A
Sbjct: 291 LKADLVTYCTLVLGLCRIQEFEVGMEMMDEM-IELGYVPSEAAVSGLIEGLIKMGSIEGA 349
Query: 148 EELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
EL ++ K G+ P+ VY MI + G +++A + M G P+ +T+TILI
Sbjct: 350 FELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILI 407
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%)
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
G+ PD Y+ I Y + G +D AM+ +E M G P ++ F LI GE +
Sbjct: 813 GMVPDCITYSTFIYEYCKRGNVDAAMDMWECMLQRGLKPDRVVFNFLIHACCLNGELDRA 872
Query: 218 AAVRRD 223
+R D
Sbjct: 873 LQLRND 878
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ S ++ L + ++ ELF L G+ PD +YT ++ ++ +KA E
Sbjct: 188 PEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCELKDFNKAKEI 247
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ +GC+ +T+ + I L
Sbjct: 248 INQAEGNGCSLSIVTYNVFINGL 270
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + ++ A ++ N V K + P+L +Y+ MI L K ++ AE LF + + GL+P
Sbjct: 340 LIKMGSIEGAFELLNKVGK-LGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNP 398
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
+ YT +I + + +D A + M G + ++ +I
Sbjct: 399 NDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMIN 443
>gi|168054024|ref|XP_001779433.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669118|gb|EDQ55711.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 570
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ + D A+ ++ V++ W KPD Y M+ + G+ I A +F E+K G+ PD
Sbjct: 125 KMGKYDEAIALYERVKQAGW-KPDKVTYGTMVRLFGRAGYIRAAVSIFEEMKGSGVQPDA 183
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
VY MI + G + A++ +E M+ G P+ +T + ++ G
Sbjct: 184 IVYNIMIACLGRAGRMGHALKVFEEMEREGVKPNAVTLSTVMETYSRCG 232
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R N D A+ F+ + E PD+ YS MI + GK + A L+ +K+ G PD
Sbjct: 90 RCNYQDAAMAWFDRMH-EAGCVPDVVTYSTMIDVYGKMGKYDEAIALYERVKQAGWKPDK 148
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
Y M+ ++ + G I A+ +E MK SG P + + I+I L AG
Sbjct: 149 VTYGTMVRLFGRAGYIRAAVSIFEEMKGSGVQPDAIVYNIMIACLGRAG 197
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD YS +I + A F + + G PD Y+ MI VY ++G D+A+
Sbjct: 75 RPDNITYSTLISCANRCNYQDAAMAWFDRMHEAGCVPDVVTYSTMIDVYGKMGKYDEAIA 134
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG---------EEELVAAVRRDCIQY 227
YE +K +G P K+T+ ++R AG EE + V+ D I Y
Sbjct: 135 LYERVKQAGWKPDKVTYGTMVRLFGRAGYIRAAVSIFEEMKGSGVQPDAIVY 186
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 53/112 (47%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
D D + L AL +F ++R E ++ Y+ M+ +L + +Q ++++ +
Sbjct: 9 DPYDVVAILNSLKSWRQALLLFRWLRAEHSSSLNIYTYNVMLKVLRRGRQWEFSQQIAED 68
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ + PD Y+ +I + D AM ++ M +GC P +T++ +I
Sbjct: 69 MANADVRPDNITYSTLISCANRCNYQDAAMAWFDRMHEAGCVPDVVTYSTMI 120
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
L+VF +R+ V D+ +Y+ ++ M + + AE+ E+ + G P+ Y MI
Sbjct: 237 GLEVFQRLRQGV--ACDVIVYNAVLKMCREAGLASEAEQYLREMTESGHQPNDWTYRNMI 294
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
VY + GM +A T+ M +G + +T L++ NA E
Sbjct: 295 SVYAKKGMAVEAHRTFSQMVEAGYQIDVMAYTSLLQAYGNAKE 337
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD +Y+ MI LG+ ++ A ++F E+++EG+ P+ + ++ Y + G + + +E
Sbjct: 180 QPDAIVYNIMIACLGRAGRMGHALKVFEEMEREGVKPNAVTLSTVMETYSRCGNVMEGLE 239
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
++ ++ G + + +++ AG
Sbjct: 240 VFQRLR-QGVACDVIVYNAVLKMCREAG 266
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 66/148 (44%), Gaps = 4/148 (2%)
Query: 81 EGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRK--EVWYKPDLSLYSDMILML 138
E FQ R+ + + D++ L+ E LA + ++R+ E ++P+ Y +MI +
Sbjct: 239 EVFQ-RLRQGVACDVIVYNAVLKMCREAGLASEAEQYLREMTESGHQPNDWTYRNMISVY 297
Query: 139 GKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK 198
K A F ++ + G D YT ++ Y +K E + M + C P +
Sbjct: 298 AKKGMAVEAHRTFSQMVEAGYQIDVMAYTSLLQAYGNAKEYNKVQEILDEMTSVNCAPDE 357
Query: 199 LTFTILIRNLENAGEEELVAAVRRDCIQ 226
+++ L++ +E + + R C++
Sbjct: 358 RLCCVILNLLDSCDTDEEL-GILRSCLR 384
>gi|222615488|gb|EEE51620.1| hypothetical protein OsJ_32898 [Oryza sativa Japonica Group]
Length = 822
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ P L Y +I LGK + LF E++K GL P+ ++Y +I + +AM
Sbjct: 270 FLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQAM 329
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAG-----EEELVAAVRRD 223
+ M ASGC P +TF LI L + G E L A+RR+
Sbjct: 330 VILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRE 374
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 104 RQNELDLALK-VFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
+Q L+ AL+ + + ++++ KP++ YS +I K AE LF ++ E L P+
Sbjct: 566 KQGNLNGALRWLCDMIKRKC--KPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEALSPN 623
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
YT +IG + + +A +ETM + C+P+ +T L+ L
Sbjct: 624 VVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGL 669
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD +Y+ +I +++ + A ++F ++ +G+ PD MI Y Q GM+ +A+
Sbjct: 481 QPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAIL 540
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDC 224
M+ GC P + T+T +I G L A+R C
Sbjct: 541 CMSNMRKVGCIPDEFTYTTVISGYAKQG--NLNGALRWLC 578
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
++V PD Y+ +I K + A C++ K P+ Y+ +I Y + G
Sbjct: 546 RKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDT 605
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNL 208
D A + M+A +P+ +T+TILI +L
Sbjct: 606 DSAEGLFANMQAEALSPNVVTYTILIGSL 634
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
A L+D +R +N D A K+F F+ + +PD+ + MI G + M+E + C
Sbjct: 488 ATLIDGF--IRSENLGD-ARKIFEFMEHK-GVRPDIVSCNAMIK--GYCQFGMMSEAILC 541
Query: 153 --ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210
++K G PD YT +I Y + G ++ A+ M C P+ +T++ LI
Sbjct: 542 MSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCK 601
Query: 211 AGEEE 215
G+ +
Sbjct: 602 TGDTD 606
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 45/107 (42%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ ++ +I L + AE E + L+P+ YT +I + G + A +
Sbjct: 342 PDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMAASDL 401
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
M G TP +TF LI L AG+ VR + FP+
Sbjct: 402 LMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPD 448
>gi|356564530|ref|XP_003550506.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g11690-like [Glycine max]
Length = 556
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 77/174 (44%), Gaps = 22/174 (12%)
Query: 60 SSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNF-- 117
+ +A+ +H M + + + L F + +C L++++ D + + + L ++F
Sbjct: 105 TDQALTFLHHM-IHEGHAPLSNTFNNLLCLLIRSNYFDKAWWIFNVLKSKVVLNAYSFGI 163
Query: 118 -------------------VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
V +E P++ +Y+ +I KN + +A+ LFC++ + G
Sbjct: 164 MITGCCEAGYFVRVFRLLAVLEEFGLSPNVVIYTTLIDGCCKNGDVMLAKNLFCKMDRLG 223
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
L P+ Y+ ++ + + G+ + + YE M SG P+ + LI N G
Sbjct: 224 LVPNQHTYSVLMNGFFKQGLQREGFQMYENMNRSGIVPNAYAYNCLISEYCNDG 277
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 5/131 (3%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++E +D A KVF +R E + Y+ +I L + K+ A +L ++ K G
Sbjct: 270 ISEYCNDGMVDKAFKVFAEMR-EKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVG 328
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN---LEN-AGEE 214
L P+ Y +I + VG +D A+ + +K+SG +P +T+ LI +EN AG
Sbjct: 329 LSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGAL 388
Query: 215 ELVAAVRRDCI 225
+LV + CI
Sbjct: 389 DLVKEMEERCI 399
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
++D A+++FN + K P L Y+ +I K + +A A +L E+++ + Y
Sbjct: 348 KMDTAVRLFNQL-KSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIARSKVTY 406
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
T +I + ++ DKA E + M+ SG P T+++LI
Sbjct: 407 TILIDAFARLNYTDKACEMHSLMEKSGLVPDVYTYSVLIH 446
>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 718
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ +I L KNK++ A +L ++ EGL PD Y ++ + +VG I+KA + +TM
Sbjct: 476 YNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMA 535
Query: 191 ASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
++GC P T+ LI L AG ++ + + R
Sbjct: 536 SNGCEPDIFTYGTLIGGLCRAGRVDVASKLLR 567
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI-GVYLQVGMIDKAME 184
P+ Y+ +I L K +I A +L L +GL PD + +I G+ L D AME
Sbjct: 331 PNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQ-DIAME 389
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
+E MK GC P + T++ILI +L
Sbjct: 390 MFEEMKNKGCKPDEFTYSILIDSL 413
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 59/112 (52%), Gaps = 5/112 (4%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMI--LMLGKNKQIAMAEELFCELKK 156
++ L ++NE++ A + + + PD+ ++ +I L L KN+ IAM E+F E+K
Sbjct: 340 ISALCKENEIEAATDLARILVSKGLL-PDVCTFNTLIQGLCLSKNQDIAM--EMFEEMKN 396
Query: 157 EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+G PD Y+ +I + +A+ + M++SGC + + + LI L
Sbjct: 397 KGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGL 448
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 47/102 (46%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E + PD ++ ++ + + A ++ + ++G DPD Y +I ++G +
Sbjct: 256 EEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFE 315
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
KA+E + M C+P+ +T+ LI L E E + R
Sbjct: 316 KAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLAR 357
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
A L+ + T +E++ LK+ + E+ +KPD + Y+ + L ++ ++ + E L
Sbjct: 94 ATLIQSFTNF---HEIENLLKI---LENELGFKPDTNFYNIALNALVEDNKLKLVEMLHS 147
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
++ EG+ D + +I + + A+ E M G P ++TFT L++ G
Sbjct: 148 KMVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEG 207
Query: 213 E 213
+
Sbjct: 208 D 208
>gi|125548275|gb|EAY94097.1| hypothetical protein OsI_15870 [Oryza sativa Indica Group]
Length = 554
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A ++F + K YKP++ Y+ MI + ++A AE L + ++GL P+T YT +I
Sbjct: 297 AFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLI 356
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
G + + G D+A E MK G P+ T+ +I G+
Sbjct: 357 GGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGK 399
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+TE +Q + AL +F+ + E PD+ Y+ +I + +Q+ +++ F + G
Sbjct: 426 ITEHCKQGHITYALDLFDRM-VENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIG 484
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGC 194
L P + YT MI Y +VG A+ +E M +GC
Sbjct: 485 LLPTKQTYTSMIAGYCKVGRSTMALRVFERMVQNGC 520
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP+ + Y+ +I K A EL ++K+EG P+ Y +I + + G I +A +
Sbjct: 346 KPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYK 405
Query: 185 TYETMKASGCTPHKLTFTILI 205
+ G K+T+TILI
Sbjct: 406 VLRMATSQGLKFDKITYTILI 426
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ D A ++ N +++E + P++ Y+ +I K +I A ++ +GL D
Sbjct: 361 KGGSFDRAFELMNKMKQE-GFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDK 419
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
YT +I + + G I A++ ++ M +GC P +T LI
Sbjct: 420 ITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLI 461
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 46/111 (41%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
K D Y+ +I K I A +LF + + G PD YT +I Y Q ++++ +
Sbjct: 416 KFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQK 475
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFL 235
++ G P K T+T +I G + V +Q F + L
Sbjct: 476 FFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTMALRVFERMVQNGCFADSIL 526
>gi|115529197|dbj|BAF34331.1| pentatricopeptide repeat protein [Physcomitrella patens]
Length = 728
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
DL+ Y+ +I GKN IA E LF +++EG+ PD Y +I Y D+A+ +
Sbjct: 624 DLASYNILINTYGKNYMIAEMETLFRTMQEEGVVPDRWTYNTIIRTYGFADYPDRAVYWF 683
Query: 187 ETMKASGCTPHKLTFTILIRNLENAG 212
+ M+ +G +P ++T+ IL+ E AG
Sbjct: 684 KAMQDAGISPDRVTYMILVSTFERAG 709
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 75/191 (39%), Gaps = 32/191 (16%)
Query: 59 LSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFV 118
L EA++ AM+ A + K E +S IC A++ D + ++ ++
Sbjct: 326 LPKEALRIFLAMRKAGMAPK-EYMCRSLICTFRDAEMFDGAKSVFKEMQV---------- 374
Query: 119 RKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM 178
P L MI + G N + AE LF L+ D Y MI VY++ M
Sbjct: 375 ---AGVTPSLESSCTMIYVYGMNGDVKEAEGLFHSLRSSVKRLDIFAYNVMINVYMRCDM 431
Query: 179 IDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEV 238
+ A++ Y+ M+ P T+ ++R Q P + EE+
Sbjct: 432 PEGAIKVYKLMEEDHLLPDAYTYHSMLR-----------------MCQKCNLPAQ-AEEI 473
Query: 239 YQKHRKTQVDL 249
Y + R + V+L
Sbjct: 474 YWRLRNSDVEL 484
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 51/132 (38%), Gaps = 15/132 (11%)
Query: 82 GFQSRICRLLKADLLDTLTEL-RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK 140
G+ S I KA L D L + E DL PD YS MI G+
Sbjct: 173 GYNSMITAYGKACLYDKAARLVEKMREEDLV--------------PDSITYSCMIGACGR 218
Query: 141 NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT 200
++ A F E+K+ + P + + +I Y + ++ + MK GC P T
Sbjct: 219 VGKLKEALSWFAEMKRLEIKPASSNFNTLISPYGKAKDVEGIVRVITEMKKYGCKPDWQT 278
Query: 201 FTILIRNLENAG 212
+R + AG
Sbjct: 279 LDAAVRAYDRAG 290
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y L Y+ ++ GK Q+ ++ ++ G+ D Y +I Y + MI +
Sbjct: 586 YGSSLEAYNSILDAYGKAGQMEKVSDVLARMENSGMRMDLASYNILINTYGKNYMIAEME 645
Query: 184 ETYETMKASGCTPHKLTFTILIR 206
+ TM+ G P + T+ +IR
Sbjct: 646 TLFRTMQEEGVVPDRWTYNTIIR 668
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ MI GK A L ++++E L PD+ Y+ MIG +VG + +A+ + MK
Sbjct: 174 YNSMITAYGKACLYDKAARLVEKMREEDLVPDSITYSCMIGACGRVGKLKEALSWFAEMK 233
Query: 191 ASGCTPHKLTFTILIRNLENAGEEELVAAV 220
P F LI A + E + V
Sbjct: 234 RLEIKPASSNFNTLISPYGKAKDVEGIVRV 263
>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g16640, mitochondrial; Flags: Precursor
gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 77/150 (51%), Gaps = 4/150 (2%)
Query: 77 SKLEEGFQSRICRLLKADLLD---TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSD 133
S+ EE ++ I R L D++ + L + LD A ++F F+ + + PD+ YS
Sbjct: 273 SEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCF-PDVVTYSI 331
Query: 134 MILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG 193
+I K+K++ +LFCE+ + G+ +T YT +I Y + G ++ A E + M G
Sbjct: 332 LINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCG 391
Query: 194 CTPHKLTFTILIRNLENAGEEELVAAVRRD 223
P+ +T+ +L+ L + G+ E + D
Sbjct: 392 VHPNIITYNVLLHGLCDNGKIEKALVILAD 421
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 119 RKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM 178
++E++ PD+ ++ +I K +++ AEE + E+ + LDPD Y+ +I
Sbjct: 249 KREIY--PDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSR 306
Query: 179 IDKAMETYETMKASGCTPHKLTFTILIRN 207
+D+A E + M + GC P +T++ILI
Sbjct: 307 LDEAEEMFGFMVSKGCFPDVVTYSILING 335
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
YKP++ +Y+ +I L K+KQ+ A +L ++K+G+ PD Y +I G A
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDAT 241
Query: 184 ETYETMKASGCTPHKLTFTILI 205
M P TF LI
Sbjct: 242 RMVSCMTKREIYPDVFTFNALI 263
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 104 RQNELDLALKVFNFVRKEVW--YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
R +L++A ++F R+ V+ P++ Y+ ++ L N +I A + +++K G+D
Sbjct: 373 RAGKLNVAEEIF---RRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDA 429
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
D Y +I + G + A + Y ++ G P T+T ++ L G
Sbjct: 430 DIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKG 480
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE-MIGVYLQVGMIDKAMET 185
D+ Y+ +I + K ++A A +++C L +GL PD YT M+G+Y + G+ +A
Sbjct: 430 DIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLY-KKGLRREADAL 488
Query: 186 YETMKASGCTPHK 198
+ MK G P++
Sbjct: 489 FRKMKEDGILPNE 501
>gi|357449339|ref|XP_003594946.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359380|gb|ABN05846.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355483994|gb|AES65197.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 849
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+ LD A + F+ ++ YKP + Y+ M+ + GK A + E++ +PD
Sbjct: 320 REGILDEARRFFDDLKLN-GYKPGTATYNSMLQVFGKAGVYTEALNILKEMEDNNCEPDA 378
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
Y E++ Y++ G D+ +TM + G P+ +T+T +I AG+ +
Sbjct: 379 ITYNELVAAYVRAGFHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGDAD 430
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 9/130 (6%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ + D AL+VF + KE+ P++ Y++++++LGK + ++ C++K G PD
Sbjct: 425 KAGDADKALEVFGQM-KELGCVPNVCTYNNVLVLLGKRSRSEDMIKILCDMKLNGCPPDR 483
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE--------E 215
+ M+ V + G + MK G P K TF LI G E E
Sbjct: 484 ITWNTMLAVCGEKGKQKFVSQVLREMKNCGFEPDKETFNTLISAYGRCGSEVDVAKMYGE 543
Query: 216 LVAAVRRDCI 225
+VAA CI
Sbjct: 544 MVAAGFTPCI 553
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 16/171 (9%)
Query: 72 LAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWY------- 124
+ S + L E F S LL++D+ L L + A +F +V W
Sbjct: 143 VGSSLNDLIEFFNSVKGELLESDITGLLKGLDLSGNWERAFLLFEWV----WLNFGSENM 198
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
K D M+ MLG+ Q ++A +LF + E D + T ++ Y + G +A+E
Sbjct: 199 KVDDQSVEFMVKMLGRESQYSIASKLFDIIPVEEYSLDVKACTTVLHAYARTGKYKRAIE 258
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEE-----ELVAAVRRDCIQYVEF 230
+E MK +G P +T+ +++ G EL+ +R +++ EF
Sbjct: 259 IFEKMKETGLDPTLVTYNVMLDVYGKMGRAWSMILELLDEMRSKGLEFDEF 309
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
YK D+ + + M+ M +N+++ A E+ + GL P+ Y +I +Y +VG KA
Sbjct: 654 YKLDMVVINSMLSMFVRNQKLEKAHEMLDVIHVSGLQPNLVTYNSLIDLYARVGDCWKAE 713
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAG 212
E + ++ SG +P +++ +I+ G
Sbjct: 714 EMLKDIQNSGISPDVVSYNTVIKGFCKKG 742
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P+L Y+ +I + + AEE+ +++ G+ PD Y +I + + G++ +A+
Sbjct: 690 QPNLVTYNSLIDLYARVGDCWKAEEMLKDIQNSGISPDVVSYNTVIKGFCKKGLVQEAIR 749
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
M A+G P +TF + G
Sbjct: 750 ILSEMTANGVQPCPITFNTFMSCYAGNG 777
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%)
Query: 132 SDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA 191
+ +I G+ + A F +LK G P T Y M+ V+ + G+ +A+ + M+
Sbjct: 312 TTVISACGREGILDEARRFFDDLKLNGYKPGTATYNSMLQVFGKAGVYTEALNILKEMED 371
Query: 192 SGCTPHKLTFTILIRNLENAGEEELVAAV 220
+ C P +T+ L+ AG + AAV
Sbjct: 372 NNCEPDAITYNELVAAYVRAGFHDEGAAV 400
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 4/120 (3%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD ++ M+ + G+ + ++ E+K G +PD + +I Y + G +
Sbjct: 481 PDRITWNTMLAVCGEKGKQKFVSQVLREMKNCGFEPDKETFNTLISAYGRCGSEVDVAKM 540
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRRDCIQYVEFPERFLEEVYQK 241
Y M A+G TP T+ L+ L G E +V +R+ + E L Y K
Sbjct: 541 YGEMVAAGFTPCITTYNALLNALARRGNWKAAESVVLDMRKKGFKPNETSYSLLLHCYSK 600
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK-NKQIAMAEELFCELKKEGLDPD 162
R + A+++F + KE P L Y+ M+ + GK + +M EL E++ +GL+ D
Sbjct: 249 RTGKYKRAIEIFEKM-KETGLDPTLVTYNVMLDVYGKMGRAWSMILELLDEMRSKGLEFD 307
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
T +I + G++D+A ++ +K +G P T+ +++ AG
Sbjct: 308 EFTCTTVISACGREGILDEARRFFDDLKLNGYKPGTATYNSMLQVFGKAG 357
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I K + A + E+ G+ P + + Y G+ +A E
Sbjct: 726 PDVVSYNTVIKGFCKKGLVQEAIRILSEMTANGVQPCPITFNTFMSCYAGNGLFAEADEV 785
Query: 186 YETMKASGCTPHKLTFTILI 205
M GC P++LT+ I+I
Sbjct: 786 IRYMIEHGCMPNELTYKIVI 805
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 48/98 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+ Y+ +I GK A E+F ++K+ G P+ Y ++ + + + ++
Sbjct: 411 PNAITYTTVINAYGKAGDADKALEVFGQMKELGCVPNVCTYNNVLVLLGKRSRSEDMIKI 470
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
MK +GC P ++T+ ++ G+++ V+ V R+
Sbjct: 471 LCDMKLNGCPPDRITWNTMLAVCGEKGKQKFVSQVLRE 508
>gi|449469290|ref|XP_004152354.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Cucumis sativus]
gi|449484425|ref|XP_004156880.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Cucumis sativus]
Length = 834
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+Q+ ++ LK+F + K+ KP++ Y+ +I + + MAE+LF ++ GL P
Sbjct: 570 KQHNMNAVLKIFGLMVKQNC-KPNVVTYTSLINGYCRKGETKMAEKLFSMMRSHGLKPSV 628
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
Y+ +IG + + + KA+ +E M + CTP+ F L+ N
Sbjct: 629 VTYSILIGSFCKEAKLGKAVSYFELMLINKCTPNDAAFHYLVNGFTNT 676
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 49/87 (56%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD ++Y+ ++ L K +++MA+ + E+ + + PD VY ++ +++ G +D+A +
Sbjct: 451 PDANIYNVLMNGLFKKGKLSMAKVMLTEMLDQNIAPDAFVYATLVDGFIRHGNLDEAKKL 510
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
++ + G P + + ++I+ +G
Sbjct: 511 FQLIIEKGLDPGVVGYNVMIKGFSKSG 537
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD +Y+ ++ ++ + A++LF + ++GLDP Y MI + + GM+D A+
Sbjct: 486 PDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGLDPGVVGYNVMIKGFSKSGMMDNAILC 545
Query: 186 YETMKASGCTPHKLTFTILI 205
+ M+ + P TF+ +I
Sbjct: 546 IDKMRRAHHVPDIFTFSTII 565
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ +S +I K + ++F + K+ P+ YT +I Y + G A +
Sbjct: 556 PDIFTFSTIIDGYVKQHNMNAVLKIFGLMVKQNCKPNVVTYTSLINGYCRKGETKMAEKL 615
Query: 186 YETMKASGCTPHKLTFTILI 205
+ M++ G P +T++ILI
Sbjct: 616 FSMMRSHGLKPSVVTYSILI 635
>gi|413944087|gb|AFW76736.1| hypothetical protein ZEAMMB73_938811 [Zea mays]
Length = 496
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
RQ ++D A +F F+RK +P+ Y+ +I K I A +F E++ G++PD
Sbjct: 268 RQGQVDKARAIFGFMRKNEC-EPNTFNYATLINGHCKKADIEAARSVFEEMRNSGVEPDA 326
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
YT +IG + G +D+ + MK GC +T+ ++I L G
Sbjct: 327 VSYTALIGCLCRHGSVDEGIGLVLEMKEKGCRADVVTYNLVIEGLCKDG 375
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD LY+ +I + Q+ A +F ++K +P+T Y +I + + I+ A
Sbjct: 254 PDQLLYNVIIDGFCRQGQVDKARAIFGFMRKNECEPNTFNYATLINGHCKKADIEAARSV 313
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+E M+ SG P +++T LI L G
Sbjct: 314 FEEMRNSGVEPDAVSYTALIGCLCRHG 340
>gi|255660922|gb|ACU25630.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
Length = 484
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K++ AE+ F E+K + ++P+ YT +I Y+ V +D A+
Sbjct: 183 PDVITYNTMINGYYRVKKMEEAEKYFVEMKGKNIEPNVVTYTTLIKGYVSVDQVDDALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L NA
Sbjct: 243 VEEMKGYGIKPNAITYSTLLPGLCNA 268
>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
Length = 418
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ YS +I L K ++ A ELF E+ GL P+ +T +I + + G ID AME
Sbjct: 203 QPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAME 262
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
TY+ M G +P +T+ LI L G+
Sbjct: 263 TYKEMLRQGFSPDLITYNTLIYGLCKKGD 291
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 114 VFNFVRK--EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIG 171
V+ F ++ E Y L ++ ++ K ++ +A+ +F E+ K GL P + ++
Sbjct: 120 VWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMN 179
Query: 172 VYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
Y+++G +D+ M ASG P T+++LI L
Sbjct: 180 GYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGL 216
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ +DLA++ + + ++ + PDL Y+ +I L K + A++L E+ +GL PD
Sbjct: 253 KTGSIDLAMETYKEMLRQ-GFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDK 311
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
YT +I + G ++ A+ + M + +T LI L G+
Sbjct: 312 ITYTTLIDGSCKEGDLETALYYRKRMIKENIRLDDVAYTALISGLCREGQ 361
>gi|255660914|gb|ACU25626.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
Length = 481
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 61/108 (56%), Gaps = 3/108 (2%)
Query: 107 ELDLALKVFNFVR-KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
++D A++ F ++ +E+ PD+ Y+ MI + K++ AE+ F E+K + ++P
Sbjct: 165 KMDTAMRFFEDMKSREI--SPDVVTYNTMINGCYRVKKMDEAEKYFVEMKGKNIEPTVVT 222
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
YT +I Y+ V + A+ E MK G P+ +T++ L+ L NAG+
Sbjct: 223 YTTLIKGYVSVDQVHDALRLVEEMKGYGIKPNAITYSTLLPGLCNAGK 270
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y + ++ + + MA+ F ++ EG++P + MI + G +D AM +E MK
Sbjct: 118 YDALFKVIMRRGRFMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKMDTAMRFFEDMK 177
Query: 191 ASGCTPHKLTFTILI 205
+ +P +T+ +I
Sbjct: 178 SREISPDVVTYNTMI 192
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 47/84 (55%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL+ F +V + ++ D + +I +LG+ ++ A + ++ K+GL+ D ++ MI
Sbjct: 28 ALQFFRWVERSNLFEHDRETHLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVLMI 87
Query: 171 GVYLQVGMIDKAMETYETMKASGC 194
Y + G++ ++++ ++ M+ G
Sbjct: 88 DSYGKAGIVQESVKLFQKMEELGV 111
>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
Length = 585
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 65/113 (57%), Gaps = 2/113 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A+++FN + K K D+ ++ +I L K +++ A ELF +L +EGL PD Y MI
Sbjct: 431 AMELFNEL-KSYNMKLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMI 489
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL-ENAGEEELVAAVRR 222
+ + G +D A ++ M+ +GCTP+ LT++ L+ +N EE+V + +
Sbjct: 490 NGFCKNGQVDNANILFQMMEENGCTPNLLTYSALLHGFYKNNKLEEVVKLLHK 542
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL ++ +I + A+ELF + +G +PD YT +I Y + +++AM+
Sbjct: 305 PDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKL 364
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
Y M G P TF +L++ L AG+
Sbjct: 365 YNEMLRVGKWPDMKTFCVLLKGLFLAGK 392
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ Y+ +I L K + A+ LF E+ +G+ PD ++ +I + GM+ +A +
Sbjct: 234 KPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKK 293
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
ETM G P TFT LI G+
Sbjct: 294 FLETMMLRGIVPDLFTFTSLIEGFCLVGD 322
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 95 LLDTLTELRRQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
++D L ++ + E A ++FN V + V +PD+ +S +I L K + A++
Sbjct: 243 IIDELCKIGKWKE---AKRLFNEMVDQGV--RPDVVTFSALIDTLCKEGMVIEAKKFLET 297
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ G+ PD +T +I + VG +D A E + +M + G P +++T+LI
Sbjct: 298 MMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLI 349
>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Glycine max]
Length = 905
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+ +D AL + + ++ + DL LY+ I GK ++ MA + F ELK +GL PD
Sbjct: 249 REGRVDAALSLLDEMKSNS-FNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDD 307
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+T MIGV + +D+A+E +E + ++ P + +I + G+
Sbjct: 308 VTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGK 357
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LLD L + E+D AL F + K + P+ YS M+ L K ++ A + E+
Sbjct: 732 LLDALV---KAEEIDEALVCFQNM-KNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEM 787
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+K+GL P+T YT MI +VG + +A + +E K+SG P + +I L NA +
Sbjct: 788 QKQGLKPNTITYTTMISGLARVGNVLEAKDLFERFKSSGGIPDSACYNAMIEGLSNANK 846
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 77 SKLEEGFQSRICRLLKADLLDTLTE-------LRRQNELDLALKVFNFVRKEVWYKPDLS 129
K+EE RI +K D LT L + EL+ ALKV + + KE P++
Sbjct: 391 GKVEEAL--RILEAMKMDAAPNLTSYNILIDMLCKAGELEAALKVQDSM-KEAGLFPNII 447
Query: 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM 189
+ MI L K +++ A +F L + PD+ + +I + G ++ A YE M
Sbjct: 448 TVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKM 507
Query: 190 KASGCTPHKLTFTILIRNLENAGEEE 215
SG TP+ + +T LIRN G +E
Sbjct: 508 LDSGQTPNAVVYTSLIRNFFKCGRKE 533
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ YS +I L K +LF E+K++GL DTR Y +I + + G ++KA +
Sbjct: 584 PDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQL 643
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
E MK G P +T+ +I L
Sbjct: 644 LEEMKTKGLQPTVVTYGSVIDGL 666
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 73/142 (51%), Gaps = 10/142 (7%)
Query: 71 KLAKSSSKLEE----GFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKP 126
K+ K+ LEE G Q + + ++D L ++ R LD A +F + +
Sbjct: 636 KVNKAYQLLEEMKTKGLQPTV--VTYGSVIDGLAKIDR---LDEAYMLFEEAKSKA-VDL 689
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
++ +YS +I GK +I A + EL ++GL P+T + ++ ++ ID+A+ +
Sbjct: 690 NVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCF 749
Query: 187 ETMKASGCTPHKLTFTILIRNL 208
+ MK C P+++T++I++ L
Sbjct: 750 QNMKNLKCPPNEVTYSIMVNGL 771
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 45/86 (52%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E+ Y+ + L++ +I + + ++ A L E+K + D +Y I + +VG +
Sbjct: 229 QEIGYEVTVHLFTTLICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKV 288
Query: 180 DKAMETYETMKASGCTPHKLTFTILI 205
D A + + +K+ G P +TFT +I
Sbjct: 289 DMAWKFFHELKSQGLVPDDVTFTSMI 314
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P + Y +I L K ++ A LF E K + +D + VY+ +I + +VG ID+A
Sbjct: 653 QPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYL 712
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
E + G TP+ T+ L+ L A E
Sbjct: 713 ILEELMQKGLTPNTYTWNCLLDALVKAEE 741
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
++D L + +R LD A +F + +V PD + +I LG++ ++ A L+ ++
Sbjct: 452 MIDRLCKAQR---LDEACSIFLGLDHKVC-TPDSVTFCSLIDGLGRHGKVNDAYMLYEKM 507
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
G P+ VYT +I + + G + + Y+ M GC+P + + + AGE
Sbjct: 508 LDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEI 567
Query: 215 E 215
E
Sbjct: 568 E 568
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 62/147 (42%), Gaps = 18/147 (12%)
Query: 87 ICRLLKA--------DLLDTLTE----------LRRQNELDLALKVFNFVRKEVWYKPDL 128
+CR+L D L+T E +RR ++ +AL F +V ++
Sbjct: 73 VCRVLDTYPWGAALEDALNTFDEMPQPELVVGVIRRLKDVRVALHYFRWVERKTKQLHSP 132
Query: 129 SLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYET 188
Y+ +++++ + + + E++ E+ G P EM+ +++ + +A ET
Sbjct: 133 EAYNALLMLMARTRNLEYLEQILEEMSMAGFGPSNNTCIEMVASFVKSRKLREAFGVIET 192
Query: 189 MKASGCTPHKLTFTILIRNLENAGEEE 215
M+ P +T LI L A E +
Sbjct: 193 MRKFKFRPAYSAYTTLIGALSAAHEAD 219
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+ +Y+ +I K + +++ E+ G PD + + + G I+K
Sbjct: 514 PNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRAL 573
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+E +KA G TP +++ILI L G
Sbjct: 574 FEEIKAQGLTPDVRSYSILIHGLVKGG 600
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP+ Y+ MI L + + A++LF K G PD+ Y MI + +KAM+
Sbjct: 793 KPNTITYTTMISGLARVGNVLEAKDLFERFKSSGGIPDSACYNAMIE---GLSNANKAMD 849
Query: 185 TY---ETMKASGCTPHKLTFTILIRNLENAG---EEELVAAVRRD 223
Y E + GC + T +L+ L A + +V AV R+
Sbjct: 850 AYILFEETRLKGCRIYSKTCVVLLDALHKADCLEQAAIVGAVLRE 894
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL L ++ + + K +I LF E+K +GL PD R Y+ +I ++ G +
Sbjct: 549 PDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKL 608
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+ MK G + I+I +G+
Sbjct: 609 FYEMKEQGLHLDTRAYNIVIDGFCKSGK 636
>gi|326525088|dbj|BAK07814.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 539
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 5/128 (3%)
Query: 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
A LL L++ R E + V + PD+ LY+ ++ + + AE++F
Sbjct: 214 ASLLGALSKKRLAGEAQALFDSYKSV-----FPPDVVLYTTLVHAWCRAGCLDKAEQVFA 268
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
E+++ G+ P+ YT +I + G + +A E M +GC P+ TF ++R AG
Sbjct: 269 EMQQAGIMPNVYTYTSVIDAMYRAGQVPRAQELLCQMMETGCPPNTATFNAIMRAHVKAG 328
Query: 213 EEELVAAV 220
E V V
Sbjct: 329 RSEQVLQV 336
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R LD A +VF + ++ P++ Y+ +I + + Q+ A+EL C++ + G P+T
Sbjct: 256 RAGCLDKAEQVFAEM-QQAGIMPNVYTYTSVIDAMYRAGQVPRAQELLCQMMETGCPPNT 314
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
+ ++ +++ G ++ ++ + M+ GC P +T+ L+ G+ L AA++
Sbjct: 315 ATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCDPDIITYNFLMETHCGKGQSNLDAAMK 372
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 112 LKVFNFVRKEVWYKPDLSLYSDMI-LMLGKNK-QIAMAEELFCELKKEGLDPDTRVYTEM 169
L+V N +R ++ PD+ Y+ ++ GK + + A ++ ++ +G PD + M
Sbjct: 334 LQVHNQMR-QLGCDPDIITYNFLMETHCGKGQSNLDAAMKVLAKMIAKGCIPDCHTFNPM 392
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
+ + L G ++ A YE M+ C P+ +T+ +L++ ++V +++D
Sbjct: 393 LKLVLGTGNVEAARRLYERMQELQCKPNVVTYNLLMKLFNKEKSMDMVLRIKKD 446
>gi|449444598|ref|XP_004140061.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27270-like [Cucumis sativus]
Length = 1062
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + Y+ MI + G+ +++ A E+F + GL PD + YT +I Y + G +A
Sbjct: 806 PSIQTYNTMISVYGRGRKLDKAVEMFNAARSSGLSPDEKAYTNLISCYGKAGKTHEASLL 865
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG----EEELVAAVRRDCIQYVEFPERF 234
++ M G P +++ I++ NAG E L+ A+ +D I P+ F
Sbjct: 866 FKEMLEEGVKPGMVSYNIMVNVYANAGLHEETENLLKAMEQDAI----VPDSF 914
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 63/126 (50%), Gaps = 3/126 (2%)
Query: 114 VFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY 173
VF++++ ++ Y+P + +Y+ ++ G+ +I +AEE F E+ + GL+PD M+ Y
Sbjct: 175 VFDWMKLQLSYRPSVIVYTIVLRAYGQVGKIKLAEETFLEMLEVGLEPDEVACGTMLCTY 234
Query: 174 LQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPER 233
+ G + Y +K G P F ++ +L+ G L A V+ +Q VE
Sbjct: 235 ARWGHHKTMLSFYSAVKDRGIVPPIAVFNFMLSSLQKKG---LHAKVKELWMQMVEIGVT 291
Query: 234 FLEEVY 239
F + Y
Sbjct: 292 FSDFTY 297
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R +LD A+++FN R PD Y+++I GK + A LF E+ +EG+ P
Sbjct: 820 RGRKLDKAVEMFNAARSS-GLSPDEKAYTNLISCYGKAGKTHEASLLFKEMLEEGVKPGM 878
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
Y M+ VY G+ ++ + M+ P T+ LIR
Sbjct: 879 VSYNIMVNVYANAGLHEETENLLKAMEQDAIVPDSFTYFSLIR 921
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D ++ I + + ++ A ++ + G+ P + Y MI VY + +DKA+E +
Sbjct: 772 DTVAFNTFIKAMLEGGKLHFASRIYEHMIALGIVPSIQTYNTMISVYGRGRKLDKAVEMF 831
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGE 213
++SG +P + +T LI AG+
Sbjct: 832 NAARSSGLSPDEKAYTNLISCYGKAGK 858
>gi|147779268|emb|CAN70089.1| hypothetical protein VITISV_038171 [Vitis vinifera]
Length = 838
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
+ALKVF+ +R + KP++ ++ ++ + AEE+F +L++ GL+PD Y +
Sbjct: 221 MALKVFHEMRSQKC-KPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNAL 279
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+ Y + G A E + M+ GC P + ++ I++ AG E AV
Sbjct: 280 MEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAV 330
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y D+S Y+ +I + G+ A EELF L L PD +T IG Y + ++ +
Sbjct: 409 YPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCL 468
Query: 184 ETYETMKASGCTPHKLT 200
E +E M +GC P T
Sbjct: 469 EVFEEMIDAGCYPDGGT 485
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 66/160 (41%), Gaps = 4/160 (2%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
D+++ +LR + D + + ++ + PD+ Y+ +I G+ AE + E
Sbjct: 64 DIINVAVQLRLNKQWDAIVLICGWILYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLE 123
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
L + P Y ++ Y G+++KA + M+ G P + + I L G+
Sbjct: 124 LLEARCVPTEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGD 183
Query: 214 E----ELVAAVRRDCIQYVEFPERFLEEVYQKHRKTQVDL 249
E+ ++RD Q L +Y K K+ + L
Sbjct: 184 TQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMAL 223
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
L+ A VF +RK + P +Y+ I L K A E+F +K++ P T YT
Sbjct: 149 LEKAEAVFAEMRK-YGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYT 207
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+I +Y + A++ + M++ C P+ TFT L+ G
Sbjct: 208 MLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREG 252
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E +PD+ Y+ ++ + A E+F ++ G +PD Y M+ Y + G+
Sbjct: 265 QEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLH 324
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRRDCIQYVEFPERFL 235
+ A +E MK G TP + +L+ AG+ EE+V + + I+ P+ F+
Sbjct: 325 EDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIK----PDTFV 380
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 118 VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177
V K + P + + ++ + ++A EE+ ++ K G+ PDT V M+ +Y ++G
Sbjct: 333 VMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLG 392
Query: 178 MIDKAMETYETMKASGCTPHKL-TFTILIRNLENAG 212
+K ME T G P + T+ ILI AG
Sbjct: 393 QFEK-MEEVLTAMEKGPYPADISTYNILINIYGRAG 427
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD + + M+ + G+ Q EE+ ++K D Y +I +Y + G + E
Sbjct: 375 KPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEE 434
Query: 185 TYETMKASGCTPHKLTFT 202
+ ++ A P +T+T
Sbjct: 435 LFRSLPARNLIPDVVTWT 452
>gi|259490098|ref|NP_001159276.1| uncharacterized protein LOC100304366 [Zea mays]
gi|223943161|gb|ACN25664.1| unknown [Zea mays]
gi|414590092|tpg|DAA40663.1| TPA: hypothetical protein ZEAMMB73_658820 [Zea mays]
gi|414590093|tpg|DAA40664.1| TPA: hypothetical protein ZEAMMB73_658820 [Zea mays]
Length = 535
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PD+ LY+ ++ + ++ AE +F E+++ G+ P+ YT +I + G + +A
Sbjct: 236 FTPDVVLYTAVVHAWCRAGRLDEAERVFTEMQQSGIMPNVYTYTAVIDAMYRAGQVPRAQ 295
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
E M SGC P+ TF ++R+ AG E V V
Sbjct: 296 ELLCQMIDSGCPPNTTTFNAIMRSHVKAGRSEQVLQV 332
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R LD A +VF +++ P++ Y+ +I + + Q+ A+EL C++ G P+T
Sbjct: 252 RAGRLDEAERVFTEMQQS-GIMPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNT 310
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
+ ++ +++ G ++ ++ + M+ C P +T+ LI G+ L AA++
Sbjct: 311 TTFNAIMRSHVKAGRSEQVLQVHNQMQQLRCEPDVITYNFLIETHCGKGQGNLDAALK 368
>gi|115486223|ref|NP_001068255.1| Os11g0607100 [Oryza sativa Japonica Group]
gi|77551887|gb|ABA94684.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113645477|dbj|BAF28618.1| Os11g0607100 [Oryza sativa Japonica Group]
Length = 671
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A ++F + K YKP++ Y+ MI + ++A AE L + ++GL P+T YT +I
Sbjct: 305 AFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLI 364
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
G + + G D+A E MK G P+ T+ +I G+
Sbjct: 365 GGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGK 407
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+TE +Q + AL +F+ + E PD+ Y+ +I + +Q+ +++ F + G
Sbjct: 434 ITEHCKQGHITYALDLFDRM-VENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIG 492
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
L P + YT MI Y +VG A+ +E M +GC +T+ LI L
Sbjct: 493 LLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGL 542
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP+ + Y+ +I K A EL ++K+EG P+ Y +I + + G I +A +
Sbjct: 354 KPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYK 413
Query: 185 TYETMKASGCTPHKLTFTILI 205
+ G K+T+TILI
Sbjct: 414 VLRMATSQGLKFDKITYTILI 434
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ D A ++ N +++E + P++ Y+ +I K +I A ++ +GL D
Sbjct: 369 KGGSFDRAFELMNKMKQE-GFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDK 427
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
YT +I + + G I A++ ++ M +GC P +T LI
Sbjct: 428 ITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLI 469
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
K D Y+ +I K I A +LF + + G PD YT +I Y Q ++++ +
Sbjct: 424 KFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQK 483
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
++ G P K T+T +I G L V
Sbjct: 484 FFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRV 519
>gi|356512321|ref|XP_003524868.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37230-like [Glycine max]
Length = 733
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 62/110 (56%), Gaps = 6/110 (5%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I + K++ AE+LF E+K + P+ +T M+ Y+ G ID A++
Sbjct: 260 PDVVTYNTLINGYFRFKKVDEAEKLFVEMKGRDIVPNVISFTTMLKGYVAAGRIDDALKV 319
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFL 235
+E MK G P+ +TF+ L+ L +A E++ A RD + E ER++
Sbjct: 320 FEEMKGCGVKPNVVTFSTLLPGLCDA--EKMAEA--RDVLG--EMVERYI 363
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 35/70 (50%)
Query: 143 QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFT 202
++ A + ++K G+ PD Y +I Y + +D+A + + MK P+ ++FT
Sbjct: 242 RLDTAVRFYEDMKSRGILPDVVTYNTLINGYFRFKKVDEAEKLFVEMKGRDIVPNVISFT 301
Query: 203 ILIRNLENAG 212
+++ AG
Sbjct: 302 TMLKGYVAAG 311
>gi|356518400|ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Glycine max]
Length = 546
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R + D A V F++ Y P++ YS ++ L K ++ A+ + E+K GL PD
Sbjct: 317 RGGKPDRARNVIQFMKSNGCY-PNVYNYSALVDGLCKVGKLEDAKGVLAEIKGSGLKPDA 375
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
YT +I + G D+A+E E MK +GC +TF +L+ L G+ E
Sbjct: 376 VTYTSLINFLCRNGKSDEAIELLEEMKENGCQADSVTFNVLLGGLCREGKFE 427
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL-KKEGLDPD 162
+ +LD A ++ +R + P+L YS ++ L +N ++ A +LF E+ ++ + PD
Sbjct: 245 KNGDLDSAFEIVEEMRNSEFSYPNLVTYSTLMDGLCRNGRVKEAFDLFEEMVSRDHIVPD 304
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
Y +I + + G D+A + MK++GC P+ ++ L+ L G+ E V
Sbjct: 305 PLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYSALVDGLCKVGKLEDAKGV 362
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD Y+ +I L +N + A EL E+K+ G D+ + ++G + G ++A++
Sbjct: 372 KPDAVTYTSLINFLCRNGKSDEAIELLEEMKENGCQADSVTFNVLLGGLCREGKFEEALD 431
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
E + G +K ++ I++ +L
Sbjct: 432 MVEKLPQQGVYLNKGSYRIVLNSL 455
>gi|223948189|gb|ACN28178.1| unknown [Zea mays]
gi|413935735|gb|AFW70286.1| hypothetical protein ZEAMMB73_980179 [Zea mays]
Length = 597
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ N+ +L+VF + K V KP++ Y+ ++ + AEE+F E+++ G +PD
Sbjct: 289 KANQPMSSLRVFREM-KSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDV 347
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
Y ++ Y + G+ A E + M+ GC P + ++ IL+ AG
Sbjct: 348 YAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAG 396
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD S Y+ M+ G+ + E F L GL D +T IG Y + + +
Sbjct: 489 PDTSTYNVMVNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRV 548
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
+E M +GC P T +L+ + + E V A+ R
Sbjct: 549 FEEMVDAGCYPDAGTAKVLLAACSDERQVEQVKAIVR 585
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P ++Y+ + L K + A E++ +KKE +T YT MI VY + ++
Sbjct: 240 PTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVYGKANQPMSSLRV 299
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ MK+ GC P+ T+T L+ G
Sbjct: 300 FREMKSVGCKPNICTYTALVNAFAREG 326
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 29/147 (19%), Positives = 61/147 (41%), Gaps = 35/147 (23%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELF-- 151
D+++ +LR + + + V +V + ++PD+ Y+ +I G+ +Q++ AE +
Sbjct: 138 DIVNVAVQLRLNRQWEPIITVCEWVLRRSSFRPDIICYNLLIDAYGQKRQLSEAEAAYMA 197
Query: 152 ---------------------------------CELKKEGLDPDTRVYTEMIGVYLQVGM 178
E+++ G+ P VY + L+
Sbjct: 198 LLEARCVPTEDTYALLLRAYCGSGQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARC 257
Query: 179 IDKAMETYETMKASGCTPHKLTFTILI 205
+KA+E Y+ MK C + T+T++I
Sbjct: 258 SEKAVEVYQRMKKERCRTNTETYTLMI 284
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 129 SLYSDMILMLG--KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
++ S M+L+ ++ +A EE+ +L K GL PDT M+ Y + G +D +
Sbjct: 416 TMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLF 475
Query: 187 ETMK----ASGCTPHKLTFTILIRNLENAG 212
M+ A P T+ +++ AG
Sbjct: 476 AAMERGDGAIAGAPDTSTYNVMVNAYGRAG 505
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD + Y+ ++ G+ AE F ELK++G+ P + + ++ + + G + + E
Sbjct: 379 EPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEE 438
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRR 222
+ SG P ++ AG E L AA+ R
Sbjct: 439 VMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMER 480
>gi|226507918|ref|NP_001144813.1| uncharacterized protein LOC100277891 [Zea mays]
gi|195647376|gb|ACG43156.1| hypothetical protein [Zea mays]
Length = 597
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ N+ +L+VF + K V KP++ Y+ ++ + AEE+F E+++ G +PD
Sbjct: 289 KANQPMSSLRVFREM-KSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDV 347
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
Y ++ Y + G+ A E + M+ GC P + ++ IL+ AG
Sbjct: 348 YAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAG 396
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD S Y+ ++ G+ + E F L GL D +T IG Y + + +
Sbjct: 489 PDTSTYNVLVNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRV 548
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
+E M +GC P T +L+ + + E V A+ R
Sbjct: 549 FEEMVDAGCYPDAGTAKVLLAACSDERQVEQVTAIVR 585
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 129 SLYSDMILMLG--KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
++ S M+L+ ++ +A EE+ +L K GL PDT M+ Y + G +D +
Sbjct: 416 TMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLF 475
Query: 187 ETMK----ASGCTPHKLTFTILIRNLENAG 212
M+ AS P T+ +L+ AG
Sbjct: 476 AAMERGDGASAGAPDTSTYNVLVNAYGRAG 505
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P ++Y+ + L K + A E++ +KKE +T Y MI VY + ++
Sbjct: 240 PTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTZTYXLMINVYGKANQPMSSLRV 299
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ MK+ GC P+ T+T L+ G
Sbjct: 300 FREMKSVGCKPNICTYTALVNAFAREG 326
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/147 (19%), Positives = 60/147 (40%), Gaps = 35/147 (23%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELF-- 151
D+++ +LR + + + V +V + ++PD+ Y+ +I G+ +Q++ AE +
Sbjct: 138 DIVNVAVQLRLNRQWEPIITVCEWVLRRSSFRPDIICYNLLIDAYGQKRQLSEAEAAYMA 197
Query: 152 ---------------------------------CELKKEGLDPDTRVYTEMIGVYLQVGM 178
E+++ G+ P VY + L+
Sbjct: 198 LLEARCVPTEDTYALLLRAYCGSGQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARC 257
Query: 179 IDKAMETYETMKASGCTPHKLTFTILI 205
+KA+E Y+ MK C + T+ ++I
Sbjct: 258 SEKAVEVYQRMKKERCRTNTZTYXLMI 284
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD + Y+ ++ G+ AE F ELK++G+ P + + ++ + + G + + E
Sbjct: 379 EPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEE 438
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRR 222
+ SG P ++ AG E L AA+ R
Sbjct: 439 VMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMER 480
>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
Length = 1023
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 43/82 (52%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP + Y+ MI + K I A LF E+K GL PDT Y MI Y +VG +D +
Sbjct: 130 KPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVY 189
Query: 185 TYETMKASGCTPHKLTFTILIR 206
+E MK+ C P +T+ LI
Sbjct: 190 FFEEMKSMSCEPDVITYNTLIN 211
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 47/86 (54%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K + +PD+ Y+ +I K ++ E F E+K+ GL P+ Y+ ++ + + M+
Sbjct: 195 KSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMM 254
Query: 180 DKAMETYETMKASGCTPHKLTFTILI 205
+A++ Y M+ G P++ T+T L+
Sbjct: 255 QQALKFYVDMRRLGLVPNEHTYTSLV 280
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K+ KP++ YS ++ K + A + + ++++ GL P+ YT ++ Y ++G +
Sbjct: 230 KQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNL 289
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNL 208
A + M G + +T+T LI L
Sbjct: 290 SDAFRLADEMSQVGVEWNVVTYTALIDGL 318
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
+V + ++ Y+ +I L ++I AEELF ++ G+ P+ YT +I +++ +D
Sbjct: 301 QVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMD 360
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAA 219
+A+E + MK G P L + I +L G E++ AA
Sbjct: 361 RALELLDEMKGRGIKPDLLLYGTFIWSL--CGLEKIEAA 397
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A+ F + + + + ++Y+ MI L K Q+ A LF ++ ++GL PD YT +I
Sbjct: 467 AIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLFEQMAQKGLVPDRTAYTSLI 526
Query: 171 GVYLQVGMIDKAMETYETMKASG 193
L+ G + +A+ + M G
Sbjct: 527 DGKLKQGNVVQALALRDKMAEIG 549
>gi|255569207|ref|XP_002525572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535151|gb|EEF36831.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 687
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
D A+ + NF +P++ +YS + L K+ + A + F E+ + GL PD YT
Sbjct: 341 DKAINLLNFFN----VRPNIFVYSSFMTKLCKDGNMLEASKTFQEMSEFGLYPDCFCYTI 396
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+IG Y +VG I+KA + M G TP T+T+LI +G+
Sbjct: 397 IIGGYCKVGDINKAFQYLGEMLKFGITPSVTTYTLLINACCKSGD 441
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 19/144 (13%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P ++ Y+ +I K+ +AMAE L + EGL PD + +I + + G + KA E
Sbjct: 424 PSVTTYTLLINACCKSGDMAMAEYLLQRMMLEGLIPDVVTFNCLIDGFGKKGYLQKAFEL 483
Query: 186 YETMKASGCTPHKLTFTILI-----RNLENAGEEELVAAVRR----DCIQYVE------- 229
+ M+++G +P +T+ LI R N ++ L +RR D + + +
Sbjct: 484 LDIMRSAGMSPDTVTYNALIHSLIARGYPNEAKDILHELIRRGLSPDVMTFTDVIDGFSK 543
Query: 230 ---FPERFLEEVYQKHRKTQVDLV 250
F E FL Y R + D+V
Sbjct: 544 KGNFEEAFLVWSYMSERHVKPDVV 567
>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
Length = 1315
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 8/133 (6%)
Query: 79 LEEGFQSRICRLLKADLLDT---LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMI 135
L GFQ++I +AD + ++E ++ +++ AL N + K V ++PD+ LY+ +I
Sbjct: 1065 LNTGFQNQI----EADGVTYTILISEQCKRADMNQALVFLNKMFK-VGFQPDIHLYTTLI 1119
Query: 136 LMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCT 195
+ + +E+LF E+ K GL P YT MI Y + + A++ ++ M GC
Sbjct: 1120 AAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCA 1179
Query: 196 PHKLTFTILIRNL 208
P +++ LI L
Sbjct: 1180 PDSISYGALISGL 1192
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
YKP++ Y+ MI K ++++ AE LF +K++GL P+T YT +I + + G KA
Sbjct: 968 YKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAY 1027
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
E E M G P+ T+ ++ L G E
Sbjct: 1028 ELMELMSNEGFFPNTCTYNSIVDGLCKRGRAE 1059
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
RQN + + K+F+ V K + P Y+ MI + K++++A + F ++ G PD+
Sbjct: 1124 RQNMMKDSEKLFDEVIK-LGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDS 1182
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT 200
Y +I + +D+A + Y+TM G +P ++T
Sbjct: 1183 ISYGALISGLCKESRLDEARQLYDTMIDKGLSPCEVT 1219
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL-KKE 157
++ L ++ + A ++ + K W KP++ ++ +I L K A LF +L + +
Sbjct: 908 ISGLCKRGSVKQAFELLEEMVKNGW-KPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSD 966
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
P+ YT MI Y + + +A +E MK G P+ T+T LI AG
Sbjct: 967 NYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGN 1022
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 116 NFVRKEVWY---------KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
+ V + VW+ P+L YS MI L K + A EL E+ K G P+ +
Sbjct: 880 SLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTH 939
Query: 167 TEMIGVYLQVGMIDKAMETY-ETMKASGCTPHKLTFTILI 205
T +I + G ++A + + +++ P+ T+T +I
Sbjct: 940 TSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMI 979
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
++ A VF+ + Y PD Y +I+ +N + A+ CE+ + G D T
Sbjct: 812 VEYAGNVFDEMSARGVY-PDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLT 870
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+I + + ++++A+ + + G +P+ + ++ +I L G
Sbjct: 871 LIITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRG 915
>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
Length = 600
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ Y+ +I L +K+I A ELF ELK G P+ YT +I L+ G I+ ++ +
Sbjct: 107 DVISYTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNF 166
Query: 187 ETMKASGCTPHKLTFTILIRNLENA 211
E M S C P + T+T++I L A
Sbjct: 167 EEMSGSSCVPTRTTYTVVIDGLCKA 191
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 56/103 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+ Y+ +I L K +I A++L ++ K G++PD + Y+ +I + M+D A +
Sbjct: 492 PECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDV 551
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYV 228
++ M GC P+++T+ +L R AG + AV++ Q V
Sbjct: 552 FQEMMKRGCAPNEVTYKVLRRGFRAAGRALDLEAVKQHFSQGV 594
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 13/166 (7%)
Query: 75 SSSKLEEGFQ------SRICR---LLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYK 125
S + EE +Q +R C +L L+D L R E A VF+ + E
Sbjct: 295 SKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPE---ARHVFDSM-IEKGCA 350
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y +I K + A E+ + K G+ PD Y ++ Y+++ +D+A
Sbjct: 351 PDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGV 410
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFP 231
Y+ M ASG P+ +TF +L+ L G+ + ++ ++ ++ E P
Sbjct: 411 YDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVP 456
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E +P L +++ ++ + A ++ E+ G PD +YT +I + G +
Sbjct: 275 RERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRV 334
Query: 180 DKAMETYETMKASGCTPHKLTFTILIR------NLENAGEE-ELVA--AVRRDCIQY 227
+A +++M GC P LT+ +I+ N+E AGE EL+A V DC Y
Sbjct: 335 PEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAY 391
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P Y ++ K I A+E+ ++++ G +P ++T ++ YL G ++A +
Sbjct: 245 EPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQ 304
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
M A GC P + +T LI L + G
Sbjct: 305 VLTEMTARGCAPDVILYTSLIDLLFSTG 332
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 34/149 (22%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ L +++D A K FN + +PD+ ++ +I K Q + +L + K
Sbjct: 14 ISGLASIDKMDEAYKFFNSMIDN-GCEPDVIAFTTLIHGFCKAGQPQVGHKLLNQALKR- 71
Query: 159 LDPDTRVYTEMIGVYLQVG--------------------------------MIDKAMETY 186
PD +YT +I Y + G ID+A E +
Sbjct: 72 FRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASLDVISYTTVIKGLADSKRIDEACELF 131
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEE 215
E +K +GC+P+ + +T +I L AG E
Sbjct: 132 EELKTAGCSPNVVAYTAVIDGLLKAGRIE 160
>gi|218185204|gb|EEC67631.1| hypothetical protein OsI_35025 [Oryza sativa Indica Group]
Length = 800
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ P L Y +I LGK + LF E++K GL P+ ++Y +I + +AM
Sbjct: 480 FLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQAM 539
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAG-----EEELVAAVRRD 223
+ M ASGC P +TF LI L + G E L A+RR+
Sbjct: 540 VILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRE 584
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 45/107 (42%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ ++ +I L + AE E + L+P+ YT +I + G + A +
Sbjct: 552 PDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMAASDL 611
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
M G TP +TF LI L AG+ VR + FP+
Sbjct: 612 LMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPD 658
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 43/82 (52%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+++Y+ +I L K + A+ + E+ ++ + PD VY +I +++ + A +
Sbjct: 657 PDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKI 716
Query: 186 YETMKASGCTPHKLTFTILIRN 207
+E M+ G P ++ +I+
Sbjct: 717 FEFMEHKGVRPDIVSCNAMIKG 738
>gi|334188692|ref|NP_201558.3| delayed greening 1 protein [Arabidopsis thaliana]
gi|223635752|sp|Q9FJW6.2|PP451_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g67570, chloroplastic; AltName: Full=Protein DELAYED
GREENING 1; AltName: Full=Protein EMBRYO DEFECTIVE 1408;
Flags: Precursor
gi|332010978|gb|AED98361.1| delayed greening 1 protein [Arabidopsis thaliana]
Length = 798
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 113 KVFNFVRKEVW---YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
K+ +R++ W +PDL +Y+ ++ Q +F EL+K GL P+ Y
Sbjct: 323 KLTKNLRQKNWDPVLEPDLVVYNAILNACVPTLQWKAVSWVFVELRKNGLRPNGATYGLA 382
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE-EELVAAVR 221
+ V L+ G D+ + + MK+SG P +T+ +L+R L G+ EE V AVR
Sbjct: 383 MEVMLESGKFDRVHDFFRKMKSSGEAPKAITYKVLVRALWREGKIEEAVEAVR 435
>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 572
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L D L + R E + LKV + PD+ +YS ++ + + ++ A +LF +L
Sbjct: 410 LFDYLCKNHRLAEAMVLLKVIEGTNLD----PDIHIYSIVMDGMCRAGELEAARDLFSKL 465
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+GL PD R YT MI Q G++ +A + + M +GC+P+ T+ ++ R
Sbjct: 466 SSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGF 519
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ ++ ++ +F + ++G P YT +I Y ++ ++DKAM
Sbjct: 296 KPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMG 355
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
+E M G P +T+ LI L + G A+ + + Y + P+
Sbjct: 356 LFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPD 403
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
N L A V + K + Y+P + ++ +I L +I A +LF ++ EG PD
Sbjct: 103 NRLGFAFSVLGDILK-LGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLT 161
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
Y +I +VG A+ +M+ C P + ++ +I +L
Sbjct: 162 YGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSL 204
Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL Y + L KN ++A A L ++ LDPD +Y+ ++ + G ++ A +
Sbjct: 402 PDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDL 461
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ + + G P T+TI+I L G
Sbjct: 462 FSKLSSKGLHPDVRTYTIMINGLCQQG 488
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 1/123 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R EL+ A +F+ + + + PD+ Y+ MI L + +A A +LF E+ + G P+
Sbjct: 451 RAGELEAARDLFSKLSSKGLH-PDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNA 509
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
Y + +L+ +A++ ++ M + G + T T+L+ L + G ++ V + +
Sbjct: 510 CTYNLITRGFLRNNETLRAIQLFQEMLSRGFSIDVSTTTLLVEMLSDDGLDQSVKQILCE 569
Query: 224 CIQ 226
+Q
Sbjct: 570 FVQ 572
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 105 QNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
++E+ + VF+ VRK P + Y+ +I K + + A LF E+ ++GL PDT
Sbjct: 312 RSEMGKTVNVFDTMVRKGCV--PSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDT 369
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
Y +I VG + A+ + M G P +T+ IL L
Sbjct: 370 VTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYL 414
>gi|326501502|dbj|BAK02540.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 673
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD Y+ MI GK + A ++F ++ EG++PD + +I + + G D AME
Sbjct: 406 QPDRHFYNVMIDTFGKYNCLGHAMDVFNRMRGEGIEPDVVTWNTLIDAHCKGGRHDCAME 465
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ M+ S C P T+ I+I L GE+E
Sbjct: 466 LFKEMRESNCPPGTTTYNIMINLL---GEQE 493
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 5/122 (4%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
D A+++F +R E P + Y+ MI +LG+ ++ E + E+K++GL P+ YT
Sbjct: 461 DCAMELFKEMR-ESNCPPGTTTYNIMINLLGEQERWVGVETMMSEMKEQGLVPNIITYTT 519
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE----LVAAVRRDC 224
++ VY + G +A++ E MKA G P + L+ G + +V A+R D
Sbjct: 520 LVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADG 579
Query: 225 IQ 226
++
Sbjct: 580 LE 581
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
Query: 112 LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ---IAMAEELFCELKKEGLDPDTRVYTE 168
L++ +R E + PDL+ YS ++ L + A+ E L +L+ L+PD ++++
Sbjct: 180 LRLLALIR-EHNFLPDLASYSHLLASLLNTRDPPDAAILERLLGDLRDSRLEPDAPLFSD 238
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+I + + + D A+E + +A G TP T LI L AG
Sbjct: 239 LISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGIAG 282
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE P++ Y+ ++ + G++ + A + +K +GL P +Y ++ Y Q G+
Sbjct: 506 KEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLA 565
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENA-GEEELV 217
D A+ + M+A G T+++ +L NA GE+ V
Sbjct: 566 DHALNVVKAMRADGLE----ASTVVLNSLINAFGEDRRV 600
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
D AL V +R + + L S +I G+++++ A + +K+ PD YT
Sbjct: 566 DHALNVVKAMRADGLEASTVVLNS-LINAFGEDRRVVEAFSVLQFMKENDFRPDVITYTT 624
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHK 198
++ ++V DK YE M SGC P +
Sbjct: 625 LMKALIRVEQFDKVPVIYEEMITSGCAPDR 654
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 117 FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176
F+ E+ KP Y+ ++ K + AE + E+ + G+ PD Y+ ++ Y +
Sbjct: 295 FLAGEI--KPRTRAYNALLKGYVKIGSLKNAEHVLDEMSECGVAPDEATYSLLVDAYTRA 352
Query: 177 GMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLE 236
G + A + M+A G P F+ ++ + G+ + AV R+ P+R
Sbjct: 353 GRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFY 412
Query: 237 EV 238
V
Sbjct: 413 NV 414
>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Cucumis sativus]
Length = 728
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
YKP++ Y+ MI K ++++ AE LF +K++GL P+T YT +I + + G KA
Sbjct: 381 YKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAY 440
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
E E M G P+ T+ ++ L G E
Sbjct: 441 ELMELMSNEGFFPNTCTYNSIVDGLCKRGRAE 472
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 8/133 (6%)
Query: 79 LEEGFQSRICRLLKADLLDT---LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMI 135
L GFQ++I +AD + ++E ++ +++ AL N + K V ++PD+ LY+ +I
Sbjct: 478 LNTGFQNQI----EADGVTYTILISEQCKRADMNQALVFLNKMFK-VGFQPDIHLYTTLI 532
Query: 136 LMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCT 195
+ + +E+LF E+ K GL P YT MI Y + + A++ ++ M GC
Sbjct: 533 AAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCA 592
Query: 196 PHKLTFTILIRNL 208
P +++ LI L
Sbjct: 593 PDSISYGALISGL 605
Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
RQN + + K+F+ V K + P Y+ MI + K++++A + F ++ G PD+
Sbjct: 537 RQNMMKDSEKLFDEVIK-LGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDS 595
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT 200
Y +I + +D+A + Y+TM G +P ++T
Sbjct: 596 ISYGALISGLCKESRLDEARQLYDTMIDKGLSPCEVT 632
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL-KKE 157
++ L ++ + A ++ + K W KP++ ++ +I L K A LF +L + +
Sbjct: 321 ISGLCKRGSVKQAFELLEEMVKNGW-KPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSD 379
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
P+ YT MI Y + + +A +E MK G P+ T+T LI AG
Sbjct: 380 NYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGN 435
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 116 NFVRKEVWY---------KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
+ V + VW+ P+L YS MI L K + A EL E+ K G P+ +
Sbjct: 293 SLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTH 352
Query: 167 TEMIGVYLQVGMIDKAMETY-ETMKASGCTPHKLTFTILI 205
T +I + G ++A + + +++ P+ T+T +I
Sbjct: 353 TSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMI 392
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/87 (20%), Positives = 41/87 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y +I+ +N + A+ CE+ + G D T +I + + ++++A+
Sbjct: 242 PDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWF 301
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ + G +P+ + ++ +I L G
Sbjct: 302 FHKVTKMGLSPNLINYSSMISGLCKRG 328
>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
Length = 497
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 9/128 (7%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L +Q LD A ++ +E +P++ +Y+ +I + ++ A ELF L +G
Sbjct: 334 LDGLCKQGHLDEAFELLK-AMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKG 392
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL------ENAG 212
+ PD YT MI L+ G+ ++A E + M GC P+ T+ ++I+ NAG
Sbjct: 393 IQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAG 452
Query: 213 E--EELVA 218
EE+V
Sbjct: 453 RLIEEMVG 460
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 1/122 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A+K+F+ + K + Y+PD+ YS +I L K MA +L +++++G P+ VY+ +I
Sbjct: 66 AVKLFDEMVK-MGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTII 124
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEF 230
+ +I +AME M G +P+ +T++ ++ N G ++ + ++
Sbjct: 125 DSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVM 184
Query: 231 PE 232
P+
Sbjct: 185 PD 186
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E KP++ +YS +I L K+K I A E E+ G+ P+ Y+ ++ + +G
Sbjct: 109 EEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRS 168
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
++A ++ M P +TF IL+ L G
Sbjct: 169 NEATSLFKQMVERNVMPDTVTFNILVDGLSKEG 201
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 9/111 (8%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD YS ++ ++ + A++L E++ GL PD Y+ ++ + G +D+A E
Sbjct: 290 PDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFEL 349
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE---------LVAAVRRDCIQY 227
+ M+ S P+ +TILI+ + N G+ E V ++ D + Y
Sbjct: 350 LKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTY 400
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
+ +L L R NE K V + V PD ++ ++ L K I A+ +F
Sbjct: 156 SSILHGFCNLGRSNEATSLFK--QMVERNVM--PDTVTFNILVDGLSKEGMILEAQCVFE 211
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ ++G++P+ Y ++ Y +D+A + + M GC P ++ ILI+ +G
Sbjct: 212 TMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSG 271
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL YS ++ L K + A EL +++ ++P+ +YT +I G ++ A E
Sbjct: 325 PDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAAREL 384
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
+ + G P +T+T++I L G + RD
Sbjct: 385 FSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRD 422
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P+ +S ++ L +I A +LF E+ K G +PD Y+ +I ++G A++
Sbjct: 44 QPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQ 103
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
+ M+ GC P+ + ++ +I +L
Sbjct: 104 LLKKMEEKGCKPNVVVYSTIIDSL 127
Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 44/92 (47%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E +P+++ Y+ ++ Q+ A++LF + ++G P R Y +I + + G ID
Sbjct: 215 EKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRID 274
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+A M TP +T++ L++ G
Sbjct: 275 EAKGLLAEMSHKALTPDTVTYSTLMKGFCQDG 306
>gi|224080562|ref|XP_002306163.1| predicted protein [Populus trichocarpa]
gi|222849127|gb|EEE86674.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 9/165 (5%)
Query: 53 MWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTEL-----RRQNE 107
M R +L + V KL +S ++E F R C+L++ L T L QN
Sbjct: 1 MERRGLLDMNKVYHVKFFKLCRSQKAVKEAF--RFCKLVQNPTLSTFNMLMSVCATSQNS 58
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
A +V K V K D LY+ +I K+ ++ E+F E+ G++P+ Y
Sbjct: 59 AG-AFEVLQLA-KAVGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEPNVHTYG 116
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+I + G + KA Y M++ P ++ F LI +G
Sbjct: 117 ALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 161
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 4/136 (2%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG--LDP 161
R ++ A + +R + KPD +++ +I G++ + A ++ E+ E +DP
Sbjct: 124 RAGQVAKAFGAYGIMRSKN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMTGEAQPIDP 182
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
D +I G +D+A E Y + +TI I + G+ E V
Sbjct: 183 DHITVGALIKACTNAGQVDRAQEVYNMVHKYNIKGTPEVYTIAINSCSQIGDWEFACKVF 242
Query: 222 RDCIQYVEFP-ERFLE 236
D + P E FL
Sbjct: 243 DDMTRKGVVPDEMFLS 258
>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1084
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PD S YS +I L ++ A LF E+K+ G+ P YT +I + + G+I +A
Sbjct: 456 FVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQAR 515
Query: 184 ETYETMKASGCTPHKLTFTILIR 206
+ ++ M GCTP+ +T+T LI
Sbjct: 516 KWFDEMLHKGCTPNVVTYTALIH 538
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + N LDL LKV + + + P++ +Y++M+ L K + A +L +++++G +P
Sbjct: 696 LFKDNRLDLVLKVLSKMLENSC-TPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNP 754
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ YT MI + + G I++ +E + M + GC P+ +T+ +LI + + G
Sbjct: 755 NVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLINHCCSNG 805
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 52/100 (52%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y P+L YS I L K+ ++ + ++ ++ + P+ +YTEM+ ++G D+A
Sbjct: 682 YSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAY 741
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
+ M+ GC P+ +T+T +I +G+ E + RD
Sbjct: 742 KLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRD 781
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 13/120 (10%)
Query: 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
+D+LD L E LDL + V K ++S ++ + GK Q A ++ C
Sbjct: 403 SDILD-LVEKAYSEMLDLGV---------VLNKVNVSNFARCLCGAGKFDQ---AFKIIC 449
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
E+ +G PD Y+++IG ++KA +E MK +G P T+TILI + AG
Sbjct: 450 EMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAG 509
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + Y+ +I K I A + F E+ +G P+ YT +I YL+ + A E
Sbjct: 493 PSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADEL 552
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+E M GC P+ +T+T LI AG+ E
Sbjct: 553 FEMMLLEGCKPNVVTYTALIDGHCKAGQIE 582
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+ +I K KQ+ +A+ELF + EG P+ YT +I + + G I+KA +
Sbjct: 528 PNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQI 587
Query: 186 YETMKA 191
Y M+
Sbjct: 588 YARMRG 593
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 15/131 (11%)
Query: 83 FQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNK 142
+ + I L+AD LDT ++R+ + + FV + LS ++ + GK +
Sbjct: 214 YNALIQVFLRADKLDTAYLVKRE------MLSYAFVMD----RYTLSCFAYSLCKGGKCR 263
Query: 143 QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFT 202
+ A +L E E PDT Y M+ + + ++AM+ M++S C P+ +T+
Sbjct: 264 E---AFDLIDE--AEDFVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYR 318
Query: 203 ILIRNLENAGE 213
IL+ G+
Sbjct: 319 ILLSGCLRKGQ 329
Score = 36.6 bits (83), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 90 LLKADLLDTLTELRRQNE-LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAE 148
++ +++D L ++ + +E L LK+ +E P++ Y+ MI GK+ +I
Sbjct: 722 VIYTEMVDGLCKIGKTDEAYKLMLKM-----EEKGCNPNVVTYTAMIDGFGKSGKIEQCL 776
Query: 149 ELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
ELF ++ +G P+ Y +I G++D+A + + MK + H L+ +I
Sbjct: 777 ELFRDMCSKGCAPNFITYRVLINHCCSNGLLDEAYKLLDEMKQTYWPKHILSHRKIIEGF 836
>gi|125526112|gb|EAY74226.1| hypothetical protein OsI_02107 [Oryza sativa Indica Group]
Length = 540
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 91 LKADLLD---TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMA 147
LK DL D + L + ++ A +F ++++ + PDL Y+ ++ G K + M
Sbjct: 219 LKTDLSDYNWLIDILSKSKQVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGWGHEKDLLML 278
Query: 148 EELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN 207
+ ++ E+ G+ PD Y +I + + G D+A++ + M+ SGC P + +LI
Sbjct: 279 KAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLING 338
Query: 208 L 208
L
Sbjct: 339 L 339
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R E A K+ + +RK P+ Y ++ L K+++I A LF ++++G +P+
Sbjct: 376 RALEFHHAFKMVDEMRKS-GIGPNTRTYDIILNHLIKSEKIEEAYNLFQRMERDGCEPEL 434
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL--ENAGEEELV 217
YT M+G++ +D A++ ++ MK G P F+ LI L +N EE V
Sbjct: 435 NTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSALINGLCFDNRLEEACV 490
>gi|115436822|ref|NP_001043145.1| Os01g0505500 [Oryza sativa Japonica Group]
gi|56201654|dbj|BAD73118.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113532676|dbj|BAF05059.1| Os01g0505500 [Oryza sativa Japonica Group]
gi|125570544|gb|EAZ12059.1| hypothetical protein OsJ_01942 [Oryza sativa Japonica Group]
Length = 540
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 91 LKADLLD---TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMA 147
LK DL D + L + ++ A +F ++++ + PDL Y+ ++ G K + M
Sbjct: 219 LKTDLSDYNWLIDILSKSKQVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGWGHEKDLLML 278
Query: 148 EELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN 207
+ ++ E+ G+ PD Y +I + + G D+A++ + M+ SGC P + +LI
Sbjct: 279 KAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLING 338
Query: 208 L 208
L
Sbjct: 339 L 339
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R E A K+ + +RK P+ Y ++ L K+++I A LF ++++G +P+
Sbjct: 376 RALEFHHAFKMVDEMRKS-GIGPNTRTYDIILNHLIKSEKIEEAYNLFQRMERDGCEPEL 434
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL--ENAGEEELV 217
YT M+G++ +D A++ ++ MK G P F+ LI L EN EE V
Sbjct: 435 NTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSALINGLCFENRLEEACV 490
>gi|384249299|gb|EIE22781.1| hypothetical protein COCSUDRAFT_47692 [Coccomyxa subellipsoidea
C-169]
Length = 1226
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ + E LAL+ F+ K+ +P++ ++ +I + Q A ELF ++++G
Sbjct: 318 ISACEKSGEWQLALRFFDECLKDNC-RPNVITFNSLITACAQGAQWEKARELFELMQQQG 376
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
PD YT +I Y + G A++ ++ M+A GC P + + +I L + G
Sbjct: 377 CTPDVVTYTALISAYERGGKWQLALQAFQAMQAKGCKPDSIVYNAIIDTLWDTG 430
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 42/86 (48%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
YS +I K+ + +A F E K+ P+ + +I Q +KA E +E M+
Sbjct: 314 YSSLISACEKSGEWQLALRFFDECLKDNCRPNVITFNSLITACAQGAQWEKARELFELMQ 373
Query: 191 ASGCTPHKLTFTILIRNLENAGEEEL 216
GCTP +T+T LI E G+ +L
Sbjct: 374 QQGCTPDVVTYTALISAYERGGKWQL 399
Score = 47.4 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
+L LAL V+ ++++ P++ Y+ +I + GK Q A ++ +K +G++P TR Y
Sbjct: 186 QLKLALDVWEDMQRD-GIVPNVVTYNTLIDVYGKLGQWEQALQVLRRMKFQGIEPVTRTY 244
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
++ G A++ YE M+A+G + ++ LI AG+ V R +Q
Sbjct: 245 NTLMIACNTSGQWQTALQLYEEMRAAGHALNTTSYNALISAHSKAGDLPQVLDTYRQMVQ 304
Score = 46.2 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 50/102 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P Y+ +++ + Q A +L+ E++ G +T Y +I + + G + + ++
Sbjct: 238 EPVTRTYNTLMIACNTSGQWQTALQLYEEMRAAGHALNTTSYNALISAHSKAGDLPQVLD 297
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
TY M GC +T++ LI E +GE +L +C++
Sbjct: 298 TYRQMVQQGCERSVITYSSLISACEKSGEWQLALRFFDECLK 339
>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
Length = 716
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 95 LLDTLTE-LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
L TL L R+ ++ AL + + V+ +PD+ LY+ I GK + MA + F E
Sbjct: 82 LFTTLVRALAREGQVADALALVDEVKGSCL-EPDIVLYNVCIDCFGKAGNVDMACKFFHE 140
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
LK +GL PD YT MI V + G + +A E + M+A P + +I +AG
Sbjct: 141 LKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGR 200
Query: 214 EE 215
E
Sbjct: 201 FE 202
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LLD L + NE AL F + KE+ P+ YS +I L + ++ A + ++
Sbjct: 575 LLDALVKAEEINE---ALVCFQSM-KEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDM 630
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
+K+GL P+ YT MI +VG I A +E KA+G P +F LI + NA
Sbjct: 631 QKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNA 687
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ +D+A K F+ ++ + KPD Y+ MI +L K ++ AEELF +++ E P
Sbjct: 127 KAGNVDMACKFFHELKAQ-GLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCA 185
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
Y MI Y G + A + E ++ GC P ++F ++ L
Sbjct: 186 YAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCL 230
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 10/129 (7%)
Query: 95 LLDTLTELRR-QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
L+ L E RR + L+L ++ +EV Y+ + L++ ++ L + Q+A A L E
Sbjct: 51 LIGALAEARRPERALELLRQM-----QEVGYEVGVHLFTTLVRALAREGQVADALALVDE 105
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+K L+PD +Y I + + G +D A + + +KA G P +++T +I L AG
Sbjct: 106 VKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGR 165
Query: 214 ----EELVA 218
EEL A
Sbjct: 166 LGEAEELFA 174
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 61/114 (53%), Gaps = 4/114 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
++D L ++ R LD A +F + + + ++ LYS +I GK +I A + E+
Sbjct: 505 IVDGLAKIDR---LDEAYMLFEEAKSK-GIELNVVLYSSLIDGFGKVGRIDEAYLILEEM 560
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
K+GL P+ + ++ ++ I++A+ +++MK C P+ T++ILI L
Sbjct: 561 MKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGL 614
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 4/129 (3%)
Query: 83 FQSRICRLLKADL--LDTLTE-LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
F+ I R K DL L+T + + + E++ +F +R + PD+ YS +I L
Sbjct: 382 FKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRS-YGFLPDVRSYSILIHGLT 440
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
K Q +F +K++G D R Y ++ + + G + KA E E MK P
Sbjct: 441 KAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVA 500
Query: 200 TFTILIRNL 208
T+ ++ L
Sbjct: 501 TYGAIVDGL 509
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE +P ++ Y ++ L K ++ A LF E K +G++ + +Y+ +I + +VG I
Sbjct: 491 KEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRI 550
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
D+A E M G TP+ T+ L+ L A E
Sbjct: 551 DEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEE 584
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+L + M+ L K +++ A ++F + G +PD Y +I + G +D+A
Sbjct: 287 PNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRL 346
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE-----LVAAVRRDC 224
+E M +G + + +T LIRN G +E +RR C
Sbjct: 347 FEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGC 390
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 90 LLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEE 149
+L + L+D ++ R +E L L+ ++K + P++ ++ ++ L K ++I A
Sbjct: 535 VLYSSLIDGFGKVGRIDEAYLILE--EMMKKGL--TPNVYTWNSLLDALVKAEEINEALV 590
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209
F +K+ P+T Y+ +I +V +KA ++ M+ G P+ +T+T +I L
Sbjct: 591 CFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLA 650
Query: 210 NAG 212
G
Sbjct: 651 KVG 653
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 4/138 (2%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
++D L + R+ E A K+F + PD Y +I LGK Q+ A LF ++
Sbjct: 295 MVDRLCKARKLEE---AYKIFESASQR-GCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKM 350
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
G + + VYT +I + G + + ++ + GC P + + AGE
Sbjct: 351 LDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEV 410
Query: 215 ELVAAVRRDCIQYVEFPE 232
E + D Y P+
Sbjct: 411 EKGRMIFEDIRSYGFLPD 428
Score = 37.4 bits (85), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/144 (20%), Positives = 64/144 (44%), Gaps = 7/144 (4%)
Query: 76 SSKLEEGFQ------SRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLS 129
+ KLEE ++ R C + L ++ ++D A ++F + + + +
Sbjct: 302 ARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKML-DAGHNANPV 360
Query: 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM 189
+Y+ +I + + ++F EL + G PD + + + G ++K +E +
Sbjct: 361 VYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDI 420
Query: 190 KASGCTPHKLTFTILIRNLENAGE 213
++ G P +++ILI L AG+
Sbjct: 421 RSYGFLPDVRSYSILIHGLTKAGQ 444
>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
Length = 896
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 95 LLDTLTE-LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
L TL L R+ ++ AL + + V+ +PD+ LY+ I GK + MA + F E
Sbjct: 219 LFTTLVRALAREGRVEGALALVDEVKGSCL-EPDIVLYNVCIDCFGKAGNVDMAWKFFHE 277
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
LK +GL PD YT MI V + G + +A E + M+ P + +I +AG+
Sbjct: 278 LKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAGQ 337
Query: 214 EE 215
E
Sbjct: 338 FE 339
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L + NE AL F + KE+ P+ YS +I L + ++ A + E+
Sbjct: 712 LMDALVKAEEINE---ALICFQSM-KEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEM 767
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
+K+GL P+ YT MI +VG I A +E KA+G TP +F LI + +A
Sbjct: 768 QKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKANGGTPDAASFNALIEGMSHA 824
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ +D+A K F+ ++ + KPD Y+ MI +L K +++ AEELF +++ E P
Sbjct: 264 KAGNVDMAWKFFHELKSQ-GLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCA 322
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
Y MI Y G + A + + +K GC P ++F ++ L
Sbjct: 323 YAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCL 367
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 8/143 (5%)
Query: 74 KSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYS- 132
+++ KL + + R C LT L ++ ++D AL +F ++K+ +P+ S Y+
Sbjct: 339 ENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKKDA--EPNSSTYNI 396
Query: 133 --DMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
DM+ M GK ++ M + E++ GL P+ M+ + + A E +ET
Sbjct: 397 IIDMLCMAGKVEEAYMIRD---EMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETAS 453
Query: 191 ASGCTPHKLTFTILIRNLENAGE 213
GC P+ +T+ LI L G
Sbjct: 454 QRGCNPNSVTYCSLIDGLGKKGN 476
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 72/140 (51%), Gaps = 6/140 (4%)
Query: 71 KLAKSSSKLEEGFQSRICRLLK--ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDL 128
KL K+ LEE R+ + ++D L ++ R LD A +F + + + ++
Sbjct: 616 KLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDR---LDEAYMLFEEAKSK-GIELNV 671
Query: 129 SLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYET 188
+YS +I GK +I A + E+ K+GL P+ + ++ ++ I++A+ +++
Sbjct: 672 IVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQS 731
Query: 189 MKASGCTPHKLTFTILIRNL 208
MK C+P+ T++ILI L
Sbjct: 732 MKEMKCSPNTYTYSILINGL 751
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K + PD+ YS +I L K Q +F +K++G D R Y ++ + + G +
Sbjct: 558 KGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKL 617
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNL 208
DKA E E MK P T+ +I L
Sbjct: 618 DKAYEVLEEMKVKRVPPTVATYGSIIDGL 646
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P ++ Y +I L K ++ A LF E K +G++ + VY+ +I + +VG ID+A
Sbjct: 634 PTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLI 693
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
E M G TP+ T+ L+ L A E
Sbjct: 694 LEEMMKKGLTPNVYTWNSLMDALVKAEE 721
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+L + M+ L K K+ A E+F + G +P++ Y +I + G +D A
Sbjct: 424 PNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRL 483
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+E M +G + + +T LIRN G +E
Sbjct: 484 FENMLDTGHNANPVVYTSLIRNFFMHGRKE 513
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 54/115 (46%), Gaps = 7/115 (6%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMI---LMLGKNKQIAMAEELFCELKKEG 158
L ++ +D A ++F + + + + +Y+ +I M G+ + ++F E+ + G
Sbjct: 471 LGKKGNVDDAYRLFENML-DTGHNANPVVYTSLIRNFFMHGRKED---GHKIFKEMNRRG 526
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
PD + + + G ++K +E +K G P +++ILI L AG+
Sbjct: 527 CQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQ 581
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 90 LLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEE 149
++ + L+D ++ R +E L L+ ++K + P++ ++ ++ L K ++I A
Sbjct: 672 IVYSSLIDGFGKVGRIDEAYLILE--EMMKKGL--TPNVYTWNSLMDALVKAEEINEALI 727
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209
F +K+ P+T Y+ +I +V +KA ++ M+ G P+ +T+T +I L
Sbjct: 728 CFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLA 787
Query: 210 NAGE 213
G
Sbjct: 788 KVGN 791
>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Glycine max]
Length = 556
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 79/174 (45%), Gaps = 22/174 (12%)
Query: 60 SSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLD----TLTELRRQNELDL----- 110
+ +A+ +H M + + L F + +C L++++ D EL+ + LD
Sbjct: 105 TDQALTFLHHM-IHEGHVPLSNTFNNLLCLLIRSNYFDKAWWIFNELKSKVVLDAYSFGI 163
Query: 111 ----ALKVFNFVR--------KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ FV+ +E P++ +Y+ +I K+ + +A+ LFC++ + G
Sbjct: 164 MIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKDGNVMLAKNLFCKMNRLG 223
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
L P+ Y+ ++ + + G+ + + YE MK SG P+ + LI N G
Sbjct: 224 LVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNDG 277
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 5/152 (3%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++E +D A KVF +R E + Y+ +I L + K+ A +L ++ K G
Sbjct: 270 ISEYCNDGMVDKAFKVFAEMR-EKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVG 328
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN---LEN-AGEE 214
L P+ Y +I + V +D A+ + +K+SG +P +T+ LI +EN AG
Sbjct: 329 LSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGAL 388
Query: 215 ELVAAVRRDCIQYVEFPERFLEEVYQKHRKTQ 246
+LV + CI + L + + + T+
Sbjct: 389 DLVKEMEERCIAPSKVTYTILIDAFARLNHTE 420
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L++ ++R+ +D A+++FN + K P L Y+ +I K + +A A +L E+
Sbjct: 339 LINGFCDVRK---MDSAVRLFNQL-KSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEM 394
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
++ + P YT +I + ++ +KA E + M+ SG P T+++L+ L
Sbjct: 395 EERCIAPSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGL 448
>gi|297797625|ref|XP_002866697.1| EMB1408 [Arabidopsis lyrata subsp. lyrata]
gi|297312532|gb|EFH42956.1| EMB1408 [Arabidopsis lyrata subsp. lyrata]
Length = 621
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 10/136 (7%)
Query: 90 LLKADLLDTLTELRRQNELDLALKVFNFVRKEVW---YKPDLSLYSDMILMLGKNKQIAM 146
LLK +LL + +R++ K+ +R+ W +PDL +Y+ ++ Q
Sbjct: 306 LLK-ELLKVIEHMRQK-----PTKLMKNLRQRNWDHVLEPDLVVYNAILNACVPTLQWKA 359
Query: 147 AEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
+F EL+K GL P+ Y + V L+ G D+ + + MK+SG P +T+ +L+R
Sbjct: 360 VSWVFVELRKNGLRPNGATYGLAMEVMLESGKYDRVHDFFRKMKSSGEAPKAITYKVLVR 419
Query: 207 NLENAGE-EELVAAVR 221
L G+ EE V AVR
Sbjct: 420 ALWREGKIEEAVEAVR 435
>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Glycine max]
Length = 852
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
P + Y+ +I L + + A LF E+K +GL PD Y +I Y +VGM+ A+
Sbjct: 248 SPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVS 307
Query: 185 TYETMKASGCTPHKLTFTILIR 206
+E MK +GC P +T+ LI
Sbjct: 308 VFEEMKDAGCEPDVITYNSLIN 329
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R+ +L+ A +F ++ + +PD+ Y+ +I GK + A +F E+K G +P
Sbjct: 261 LAREGDLEAARSLFEEMKAK-GLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEP 319
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
D Y +I + + I +A E MK G P+ +T++ LI AG
Sbjct: 320 DVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAG 370
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K+ +PD+ Y+ +I K ++I A E +K+ GL P+ Y+ +I + + GM+
Sbjct: 313 KDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGML 372
Query: 180 DKAMETYETMKASGCTPHKLTFTILI 205
+A + + M G P++ T+T LI
Sbjct: 373 LEANKFFVDMIRVGLQPNEFTYTSLI 398
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ YS +I K + A + F ++ + GL P+ YT +I ++G +++A +
Sbjct: 353 QPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFK 412
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAV 220
M+ +G + +T+T L+ L G EEL A+
Sbjct: 413 LESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGAL 452
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPDL LY I L + +I + + E+ GL ++ +YT +I Y +VG +A+
Sbjct: 493 KPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVN 552
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ M+ G +T+ +LI L G
Sbjct: 553 LLQEMQDLGIKITVVTYGVLIDGLCKIG 580
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 54/111 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ +Y+ +I L KN + A+ LF E+ +G+ PD VYT +I ++ G +A+
Sbjct: 598 QPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALS 657
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFL 235
M G +T LI G+ +L ++ + ++ P++ L
Sbjct: 658 LRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQVL 708
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
++ Y+ ++ L ++ ++ AEELF L K G + ++YT + Y++ M++KAM+
Sbjct: 425 NIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDIL 484
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR---DC 224
E M P L + I L E E AV R DC
Sbjct: 485 EEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDC 525
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + ++++ L K+ + +A F ++ GL P Y +IG + G ++ A
Sbjct: 214 PKVRSCNELLHRLSKSSKGGLALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSL 273
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+E MKA G P +T+ LI G
Sbjct: 274 FEEMKAKGLRPDIVTYNSLIDGYGKVG 300
>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
Length = 758
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 102 LRRQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD 160
L + ELD A + N V + PD + ++ +I+ L ++ A +L EL +GL
Sbjct: 347 LSKNGELDEAKGIVNQMVDRGCL--PDTTTFNTLIVALSSQNRLEEALDLARELTVKGLS 404
Query: 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
PD + +I +VG + +E MK+SGCTP ++T+ ILI +L + G+
Sbjct: 405 PDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGK 457
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 48/92 (52%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
++ +I L K K+I A EL ++ KEGL P+ Y ++ Y + G I KA + ETM
Sbjct: 515 FNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMT 574
Query: 191 ASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
A+G +T+ LI L AG ++ + R
Sbjct: 575 ANGFEIDVVTYGTLINGLCKAGRTQVALKLLR 606
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
ALKV + + +E + PD+ Y+ +I L KN ++ A+ + ++ G PDT + +I
Sbjct: 321 ALKVMDLMLQE-GHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLI 379
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
+++A++ + G +P TF ILI L G+ L
Sbjct: 380 VALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHL 425
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 115 FNFVRKEV--WYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGV 172
++++E+ ++PD Y+ + L +N ++ A ++ + +EG DPD Y +I
Sbjct: 287 LGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINC 346
Query: 173 YLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL--ENAGEEEL 216
+ G +D+A M GC P TF LI L +N EE L
Sbjct: 347 LSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEAL 392
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 9/135 (6%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ + +I L + Q+ A + E+ G+ PD +T ++ +++ G I+ A+
Sbjct: 194 QPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALR 253
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG---------EEELVAAVRRDCIQYVEFPERFL 235
M +GC+P +T +LI G ++E+ D + Y F
Sbjct: 254 VKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLC 313
Query: 236 EEVYQKHRKTQVDLV 250
+ + H +DL+
Sbjct: 314 QNGHVSHALKVMDLM 328
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 7/113 (6%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYK---PDLSLYSDMILMLGKNKQIAMAEELFCELK 155
+ L QN L+ AL + +E+ K PD+ ++ +I L K + LF E+K
Sbjct: 379 IVALSSQNRLEEALDL----ARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMK 434
Query: 156 KEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
G PD Y +I +G + A++ M+++GC +T+ +I L
Sbjct: 435 SSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDAL 487
>gi|9757878|dbj|BAB08465.1| unnamed protein product [Arabidopsis thaliana]
Length = 505
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PDL +Y+ ++ Q +F EL+K GL P+ Y + V L+ G D+ +
Sbjct: 232 EPDLVVYNAILNACVPTLQWKAVSWVFVELRKNGLRPNGATYGLAMEVMLESGKFDRVHD 291
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE-EELVAAVR 221
+ MK+SG P +T+ +L+R L G+ EE V AVR
Sbjct: 292 FFRKMKSSGEAPKAITYKVLVRALWREGKIEEAVEAVR 329
>gi|168055626|ref|XP_001779825.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668737|gb|EDQ55338.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 734
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ +S ++ G + A E E+K G PD YT +I +Q G ++KA +
Sbjct: 598 PDVKSWSILLDSYGSKGDVEGASEALEEMKAAGFKPDVVAYTSLIQACVQAGHLEKAFDY 657
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ MKA+G P+ +T+ L+R N G
Sbjct: 658 FSKMKAAGVRPNAVTYNSLLRRHRNYG 684
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ E R L KV +F+ KE+ PD+ Y +I G++K+ + A +F ++ +G
Sbjct: 284 IREFSRHGNLRSCFKVLDFM-KELGVMPDVFTYRVLIDSCGRHKEPSKATIVFEKMLNDG 342
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
+P+ VY ++ V VG + + ++ M+ +G ++ IL++ +G +L
Sbjct: 343 FEPNRFVYNSIMNV--NVGNLSEVRRYFQHMQGAGIAADVTSYNILLKAYAASGRADLAG 400
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 51/98 (52%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
DLA ++ ++K D+ YS +I + GK K A + ++ + G+ P+ +T
Sbjct: 397 DLAGDLYAQIKKAGKVTLDVVFYSTLINVFGKAKMWEEALRVKADMLEAGVTPNVVTWTS 456
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
+IG G++D++ ++ M +GC P+ + +L++
Sbjct: 457 IIGACATAGLVDQSFREFDEMLNAGCRPNVNCYNMLLQ 494
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 11/112 (9%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ M+ G + L E++ GL PD + ++ ++ Y G ++ A E
Sbjct: 564 RPNIITYNCMMKACGSASE--KVRSLMREMRALGLVPDVKSWSILLDSYGSKGDVEGASE 621
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE---------LVAAVRRDCIQY 227
E MKA+G P + +T LI+ AG E A VR + + Y
Sbjct: 622 ALEEMKAAGFKPDVVAYTSLIQACVQAGHLEKAFDYFSKMKAAGVRPNAVTY 673
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEG-LDPDTRVYTEMIGVYLQVGMIDKAMET 185
D++ Y+ ++ + + +A +L+ ++KK G + D Y+ +I V+ + M ++A+
Sbjct: 379 DVTSYNILLKAYAASGRADLAGDLYAQIKKAGKVTLDVVFYSTLINVFGKAKMWEEALRV 438
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
M +G TP+ +T+T +I AG
Sbjct: 439 KADMLEAGVTPNVVTWTSIIGACATAG 465
>gi|255578371|ref|XP_002530052.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530468|gb|EEF32352.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 554
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
Query: 115 FNFVRK------EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
FN +K E+ PD Y+ +I L K+ ++ MA +FC++ ++G+ PD +
Sbjct: 376 FNIAKKLLDQMTEMGLSPDCIFYTTIIDHLCKSGKVEMAHSIFCDMVEQGISPDVISFNA 435
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+I + + + +AM YE M+ G P ++T+ ++I L
Sbjct: 436 LINGFCKCSRVSEAMHLYEEMQNRGSYPDEVTYKLIIGGL 475
Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
Query: 113 KVFNFVRKEVWYKP--DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
K + + ++W K D+ Y+ +I K A +LF E+ ++G+ PD +T I
Sbjct: 308 KAYLLMTNKMWPKGLCDVVSYNTIIKAFCKIGDTTSAYKLFEEMGQKGIPPDVVTFTIFI 367
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
+L G + A + + M G +P + +T +I +L +G+ E+ ++ D ++
Sbjct: 368 KAFLGKGSFNIAKKLLDQMTEMGLSPDCIFYTTIIDHLCKSGKVEMAHSIFCDMVE 423
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG-LDPDTRVYTEMIGVYLQVGMIDKA 182
+ PD +++ L +++ +A EL ++ K G + T VY +I + + G IDKA
Sbjct: 180 FSPDNKACGAIVVGLCDGRKVDLAYELIIDVMKSGRVKLSTLVYNALISGFCRAGRIDKA 239
Query: 183 METYETMKASGCTPHKLTFTILIR 206
M+ +GC P +T+ + +
Sbjct: 240 QAIKSFMRRNGCEPDLVTYNVFLN 263
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 7/174 (4%)
Query: 53 MWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLAL 112
++RSR+ V A + K+ +E QS CR+ D + L + DLA
Sbjct: 11 IYRSRIAG-----YVKAGLIDKAVQVFDEMSQSN-CRVFSIDYNRFIGVLINHSRFDLAN 64
Query: 113 KVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGV 172
++ + + + YS I L K K +EL +++ PD + + +
Sbjct: 65 HYYSQMGTRGFSLSSFT-YSRFITGLCKVKNFTFIDELLHDMETLNCLPDIWAFNIYLHL 123
Query: 173 YLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
G ID A+E +E + +G P +T+TI+I + + + RD I
Sbjct: 124 LFVEGRIDLALEVFEKIVKNGRKPDVVTYTIIIHGVCKIKKFDTAIQFWRDMIH 177
>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62930, chloroplastic; Flags: Precursor
gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 629
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 8/131 (6%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LLD L + +L+ AL VF +++K +PD+ Y+ MI + K ++ +LFC L
Sbjct: 471 LLDGLC---KYGKLEKALVVFEYLQKSKM-EPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 526
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI----RNLEN 210
+G+ P+ +YT MI + + G+ ++A + MK G P+ T+ LI R+ +
Sbjct: 527 SLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDK 586
Query: 211 AGEEELVAAVR 221
A EL+ +R
Sbjct: 587 AASAELIKEMR 597
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
P++ +S +I K ++ AE+L+ E+ K +DPD Y+ +I + +D+A
Sbjct: 322 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH 381
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
+E M + C P+ +T+ LI+
Sbjct: 382 MFELMISKDCFPNVVTYNTLIKGF 405
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+ +I K K++ ELF E+ + GL +T Y +I Q G D A +
Sbjct: 393 PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKI 452
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ M + G P +T++IL+ L G+ E
Sbjct: 453 FKKMVSDGVPPDIITYSILLDGLCKYGKLE 482
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PDL Y ++ L K I +A L +++K ++ D +YT +I ++ A+
Sbjct: 217 QPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALN 276
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ M G P+ +T+ LIR L N G
Sbjct: 277 LFTEMDNKGIRPNVVTYNSLIRCLCNYG 304
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 46/85 (54%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ +I L + MA+++F ++ +G+ PD Y+ ++ + G ++KA+ +E ++
Sbjct: 433 YNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQ 492
Query: 191 ASGCTPHKLTFTILIRNLENAGEEE 215
S P T+ I+I + AG+ E
Sbjct: 493 KSKMEPDIYTYNIMIEGMCKAGKVE 517
Score = 40.0 bits (92), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + + D+A K+F + + PD+ YS ++ L K ++ A +F L+K ++P
Sbjct: 440 LFQAGDCDMAQKIFKKMVSD-GVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEP 498
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
D Y MI + G ++ + + ++ G P+ + +T +I G +E A+
Sbjct: 499 DIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALF 558
Query: 222 RD 223
R+
Sbjct: 559 RE 560
Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+++L LAL V + K + Y+PD+ S ++ K+I+ A L ++ P+T
Sbjct: 127 RRSQLPLALAVLGKMMK-LGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNT 185
Query: 164 RVYTEMI-GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+ +I G++L +A+ + M A GC P T+ ++ L G+ +L ++
Sbjct: 186 VTFNTLIHGLFLH-NKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSL 242
>gi|356541064|ref|XP_003539003.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
chloroplastic-like [Glycine max]
Length = 703
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 5/128 (3%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIA-MAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM 178
+E KP+ Y+ +I GK K ++ MA + F ++KK+G+ P + YT +I Y G
Sbjct: 428 QETGLKPNAKSYTCIISAYGKQKNMSDMAADAFLKMKKDGIKPTSHSYTALIHAYSVSGW 487
Query: 179 IDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV----RRDCIQYVEFPERF 234
+KA +E M+ G P T+T L+ AG+ + + + RR+ ++
Sbjct: 488 HEKAYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMRREKVEGTRVTFNT 547
Query: 235 LEEVYQKH 242
L + + KH
Sbjct: 548 LVDGFAKH 555
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%)
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209
+ EL+K+G+ +T VY ++ Y + +++A + MK G P + TF IL+
Sbjct: 353 ILSELEKKGVSSNTIVYNTLMDAYCKSNRVEEAEGLFVEMKTKGIKPTEATFNILMYAYS 412
Query: 210 NAGEEELV 217
+ E+V
Sbjct: 413 RKMQPEIV 420
>gi|293334337|ref|NP_001169631.1| uncharacterized protein LOC100383512 [Zea mays]
gi|224030539|gb|ACN34345.1| unknown [Zea mays]
gi|413953501|gb|AFW86150.1| hypothetical protein ZEAMMB73_846563 [Zea mays]
Length = 790
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD +Y +I + GK A + F E++K GL D + Y M V+L G D+A+E
Sbjct: 381 PDEVIYGILIRIYGKLGLYEEARQTFGEIEKAGLLNDEQTYVAMAQVHLNAGDCDRALEV 440
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAA 219
E+MK G P + +++ L+R + +E++VAA
Sbjct: 441 LESMKTRGVKPSRFSYSALLRC--HVAKEDVVAA 472
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Query: 73 AKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYS 132
++ S+ + + S + RL ++ L E R + A F +++ ++ Y+P + Y+
Sbjct: 121 SRPSADMRQAMASFVTRLTFREMCVVLREQRGWRQ---ARDFFAWMKLQLCYEPSVVAYT 177
Query: 133 DMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS 192
++ + G+ ++ +AEE F E+ + G +PD ++ Y + G + M Y ++
Sbjct: 178 VLLRLYGRVGKVKLAEETFLEMLQVGCEPDAVACGTLLCAYARWGRHEDMMLFYSAVRGR 237
Query: 193 GCTPHKLTFTILIRNLE 209
G P + +I +L+
Sbjct: 238 GLVPPISVYNYMISSLQ 254
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 11/149 (7%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ L R+ D A +++ + E+ KPD S + +I+ G+ KQ+ A+ELF +
Sbjct: 614 ISRLAREGSTDEARFIYDQL-TELGTKPDDSAVATLIVQYGQAKQLERAQELF-DSASAS 671
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE----E 214
V M+ + + G + A + M G + +T +IL+ +L G+ E
Sbjct: 672 FPDGALVCNAMVDAFCKCGRAEDAYHLFMEMADQGSYRNAVTASILVTHLTKHGKFQEVE 731
Query: 215 ELVAAVRRDCIQ-----YVEFPERFLEEV 238
++ RD +Q Y F + LE V
Sbjct: 732 NIMHGCFRDEVQLDTALYNTFIKSMLESV 760
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Query: 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
+ L +++ L+ A+ +F +R+ + P+ + YS +I ++ + A LF E+K +
Sbjct: 284 VIGSLVKEDLLEEAVDLFGEMRRR-RFVPEEATYSLLISASSRHGKGEQALRLFEEMKGQ 342
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
G+ P ++ ++ + KA+ + M++S P ++ + ILIR
Sbjct: 343 GIAPSNYTCASLLALHCKNEDYPKALALFSDMESSKVIPDEVIYGILIR 391
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 47/90 (52%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P +S+Y+ MI L K K ++ ++ + G P+ YT +IG ++ ++++A++
Sbjct: 241 PPISVYNYMISSLQKQKLHGKVIHVWKQMLEAGAPPNQFTYTVVIGSLVKEDLLEEAVDL 300
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ M+ P + T+++LI G+ E
Sbjct: 301 FGEMRRRRFVPEEATYSLLISASSRHGKGE 330
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R + + AL++F ++ + P + ++ + KN+ A LF +++ + PD
Sbjct: 325 RHGKGEQALRLFEEMKGQ-GIAPSNYTCASLLALHCKNEDYPKALALFSDMESSKVIPDE 383
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+Y +I +Y ++G+ ++A +T+ ++ +G + T+ + + NAG+
Sbjct: 384 VIYGILIRIYGKLGLYEEARQTFGEIEKAGLLNDEQTYVAMAQVHLNAGD 433
>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Cucumis sativus]
Length = 581
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E + PD+ Y+ MI K QI A ++F ++ G PD Y MIG G ++
Sbjct: 124 ETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLE 183
Query: 181 KAMETYETMKASGCTPHKLTFTILI 205
A E + + GC P +T+TILI
Sbjct: 184 LAFEVMDELLKDGCKPSVITYTILI 208
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 1/117 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ + N++D A +VF+ +R + PD+ Y+ MI L ++ +A E+ EL K+G
Sbjct: 138 ISGFSKANQIDSANQVFDRMRSR-GFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDG 196
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
P YT +I + G I++A+E ++ + + G P T+ +IR + G E+
Sbjct: 197 CKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGMED 253
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L + +L+LA +V + + K+ KP + Y+ +I +I A ELF EL G
Sbjct: 173 IGSLCSRGKLELAFEVMDELLKD-GCKPSVITYTILIEATILEGRINEALELFDELVSRG 231
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210
L PD Y +I + GM D+A++ + A GC P +++ IL+R+ N
Sbjct: 232 LRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLN 283
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
DLAL VF + EV P + Y+ M L A E+ E+ ++G+DPD Y
Sbjct: 393 DLALDVFEKL-DEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNS 451
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA-----GEEELVAAVRRD 223
+I + G++D+A+ M+A+ P ++F I++ + A G E L+ V +
Sbjct: 452 LISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKG 511
Query: 224 CI 225
C+
Sbjct: 512 CL 513
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 48/96 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ +S +I + ++ A + +K++GL PD+ Y +I + + G +D A+E
Sbjct: 303 EPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIE 362
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
E M + GC P + + ++ L G +L V
Sbjct: 363 YLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDV 398
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 41/97 (42%)
Query: 118 VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177
V KE PD Y +I K ++ +A E ++ +G PD Y ++ + G
Sbjct: 331 VMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFG 390
Query: 178 MIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
D A++ +E + GC P + + L + G +
Sbjct: 391 CADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNK 427
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Query: 104 RQNELDLALKVFNFVRKEV--WYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
++ LDLA++ ++ K V PD+ Y+ ++ L K +A ++F +L + G P
Sbjct: 353 KEGRLDLAIE---YLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPP 409
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
R Y M G KA+E M G P ++T+ LI L G
Sbjct: 410 TVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDG 460
>gi|255539196|ref|XP_002510663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551364|gb|EEF52850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 695
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 134 MILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG 193
+I LG + +I AE +F E+K GL P TR Y ++ Y++ GM+ A M+ SG
Sbjct: 297 VISALGDSGRIIEAEAIFEEMKDNGLKPKTRAYNGLLKGYVKAGMLKDAEFIVSEMERSG 356
Query: 194 CTPHKLTFTILIRNLENAGEEE 215
+P + T+++LI NAG E
Sbjct: 357 VSPDECTYSLLIDAYSNAGRWE 378
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD Y+ MI GK + A + F ++ EG+ PDT + +I + + + ++A E
Sbjct: 428 RPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNTLIDCHCKAELHERAEE 487
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+E M G +P TF I+I + GE+E
Sbjct: 488 LFEEMMEKGFSPCVTTFNIMINSF---GEQE 515
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+ +I + GK+ + + A E ++K GL P + +Y +I Y Q G+ ++A+
Sbjct: 534 PNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNALINAYAQKGLSEQAVNA 593
Query: 186 YETMKASGCTPHKLTFTILIR 206
+ M+A P L LI
Sbjct: 594 FRLMRADSLKPSLLALNSLIN 614
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E + P ++ ++ MI G+ ++ + L ++ GL P+ YT +I +Y + G
Sbjct: 494 EKGFSPCVTTFNIMINSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTLIDIYGKSGRFS 553
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAG-EEELVAAVR 221
A+E E MK++G P + LI G E+ V A R
Sbjct: 554 DAIECLEDMKSAGLKPSSTMYNALINAYAQKGLSEQAVNAFR 595
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 63/111 (56%), Gaps = 3/111 (2%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQI--AMAEELFCELKKEGLDP 161
R N+L+ A+ + + +R++ Y D YS +I L ++ +I + ++L+ E++ + L+
Sbjct: 196 RNNDLEKAINLISRMRQD-GYPSDFVNYSLIIQSLVRSNRIDSPILQKLYSEIQCDKLEL 254
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
D ++ ++I + + G +KAME ++ASG +P T +I L ++G
Sbjct: 255 DVQLSNDIIVGFAKAGDPNKAMEFLGMVQASGLSPRTATLIAVISALGDSG 305
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A+ F +R + KP L + +I G++++ A A + +K+ L PD YT ++
Sbjct: 590 AVNAFRLMRADS-LKPSLLALNSLINAFGEDRRDAEAFSVLKYMKENDLKPDVVTYTTLM 648
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHK 198
++V +K YE M +GCTP +
Sbjct: 649 KALIRVDKFNKVPSVYEEMILAGCTPDR 676
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
E+K G+ PD Y MI + + +D AM+T++ M + G P +T+ LI
Sbjct: 421 EMKNSGVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNTLI 473
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 44/94 (46%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K+ KP Y+ ++ K + AE + E+++ G+ PD Y+ +I Y G
Sbjct: 318 KDNGLKPKTRAYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECTYSLLIDAYSNAGRW 377
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ A + M+A+ P+ F+ ++ + + GE
Sbjct: 378 ESARIVLKEMEANNIMPNSYVFSRILASYRDRGE 411
>gi|125569916|gb|EAZ11431.1| hypothetical protein OsJ_01299 [Oryza sativa Japonica Group]
Length = 563
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A ++F + K YKP++ Y+ MI + ++A AE L + ++GL P+T YT +I
Sbjct: 197 AFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLI 256
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
G + + G D+A E MK G P+ T+ +I G+
Sbjct: 257 GGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGK 299
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+TE +Q + AL +F+ + E PD+ Y+ +I + +Q+ +++ F + G
Sbjct: 326 ITEHCKQGHITYALDLFDRM-VENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIG 384
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
L P + YT MI Y +VG A+ +E M +GC +T+ LI L
Sbjct: 385 LLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGL 434
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP+ + Y+ +I K A EL ++K+EG P+ Y +I + + G I +A +
Sbjct: 246 KPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYK 305
Query: 185 TYETMKASGCTPHKLTFTILI 205
+ G K+T+TILI
Sbjct: 306 VLRMATSQGLKFDKITYTILI 326
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ D A ++ N +++E + P++ Y+ +I K +I A ++ +GL D
Sbjct: 261 KGGSFDRAFELMNKMKQE-GFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDK 319
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
YT +I + + G I A++ ++ M +GC P +T LI
Sbjct: 320 ITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLI 361
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
K D Y+ +I K I A +LF + + G PD YT +I Y Q ++++ +
Sbjct: 316 KFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQK 375
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
++ G P K T+T +I G L V
Sbjct: 376 FFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRV 411
>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 618
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A+++FN + K +K ++ YS +I L K ++ A ELF +L +EGL PD Y MI
Sbjct: 466 AMELFNEL-KSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMI 524
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ +VG +D A +E M+ +GCTP + + L+
Sbjct: 525 HGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLL 559
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP + YS +I L K + A+ELF E+K +G+ PD Y+ +I + G D++
Sbjct: 234 KPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKH 293
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
++ M G P +TF++LI L G+
Sbjct: 294 LFDEMVDQGVQPDMVTFSVLIDTLCKEGK 322
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+DTL + + E L+V +++ + P+L Y+ +I + A ELF +
Sbjct: 313 LIDTLCKEGKVTEAKKLLEVM--IQRGIV--PNLITYNSLIDGFCMVGDLNSARELFLSM 368
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+GL+PD YT +I Y + + +AM Y M G +P+ T+ L++ L G+
Sbjct: 369 PSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGK 427
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y P++ Y+ +I L +I+ A LF ++K G P+ Y +I Q G ++ A+
Sbjct: 157 YIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIAL 216
Query: 184 ETYETM------KASGCTPHKLTFTILIRNLENAGEEE 215
+ ++ M C P +T++I+I L G E+
Sbjct: 217 KLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGRED 254
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 62/161 (38%), Gaps = 11/161 (6%)
Query: 63 AIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEV 122
AIQA H L S + S RLL L + N ++N +R
Sbjct: 72 AIQAFHFFDLMMRSHPIPP--ISSFNRLLGG--------LAKINHYSQLFSLYNEMRL-A 120
Query: 123 WYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKA 182
PDL S + L +++ A + + G P+ YT +I I +A
Sbjct: 121 GLSPDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEA 180
Query: 183 METYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
+ M+ GCTP+ +T+ LI+ L G + + ++
Sbjct: 181 TRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKE 221
>gi|356502612|ref|XP_003520112.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
chloroplastic-like [Glycine max]
Length = 697
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIA--MAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177
++V KP+ + Y+ +I+ GK K ++ A + F ++KK G+ P ++ YT +I Y G
Sbjct: 417 QDVGLKPNATSYTCLIIAYGKQKNMSDMAAADAFLKMKKVGVKPTSQSYTALIHAYSVSG 476
Query: 178 MIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
+ +KA +E M+ G P T+T L+ +AG+ + + + +
Sbjct: 477 LHEKAYAAFENMQNEGIKPSIETYTTLLNAFRHAGDAQTLMEIWK 521
>gi|356515931|ref|XP_003526650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Glycine max]
Length = 461
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 2/107 (1%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L+ L + N + A ++F+ ++ + + PD YS ++ GK + A E+F E+ + G
Sbjct: 154 LSALCKSNNVRKAQEIFDAMKGQ--FVPDEKSYSILLEGWGKAPNLPRAREVFREMVEAG 211
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
DPD Y M+ V + G +D+A+E + M C P +++L+
Sbjct: 212 CDPDVVTYGIMVDVLCKAGRVDEAVEVVKEMDVGNCRPTSFIYSVLV 258
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 7/121 (5%)
Query: 104 RQNELDLALKVFNFVRKEVWYK--PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
R N++D A+ FN + K Y P+L+ ++ ++ L K+ + A+E+F +K + + P
Sbjct: 124 RANKVDEAVYTFNVMDK---YDVVPNLAAFNGLLSALCKSNNVRKAQEIFDAMKGQFV-P 179
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE-EELVAAV 220
D + Y+ ++ + + + +A E + M +GC P +T+ I++ L AG +E V V
Sbjct: 180 DEKSYSILLEGWGKAPNLPRAREVFREMVEAGCDPDVVTYGIMVDVLCKAGRVDEAVEVV 239
Query: 221 R 221
+
Sbjct: 240 K 240
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 44/91 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P +YS ++ G +I A + F E+ K+G+ D Y +IG + +V
Sbjct: 248 RPTSFIYSVLVHTYGVEHRIEDAIDTFLEMAKKGIKADVVAYNALIGAFCKVNKFKNVHR 307
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ M+++G P+ T ++I ++ G+ +
Sbjct: 308 VLKEMESNGVAPNSRTCNVIISSMIGQGQTD 338
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 9/134 (6%)
Query: 84 QSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ 143
SR C ++ + ++ Q + D A +VF R +PD Y+ MI M + +
Sbjct: 320 NSRTCNVIISSMIG-------QGQTDRAFRVF--CRMIKLCEPDADTYTMMIKMFCEKNE 370
Query: 144 IAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTI 203
+ MA +++ +K + P ++ +I + KA E M G P ++TF
Sbjct: 371 LEMALKIWKYMKSKQFVPSMHTFSALIKGLCEKDNAAKACVVMEEMIEKGIRPSRITFGR 430
Query: 204 LIRNLENAGEEELV 217
L + L G E+++
Sbjct: 431 LRQLLIKEGREDVL 444
>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
Length = 1128
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 46/89 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP + Y+ MI + K I A LF E+K GL PDT Y MI Y +VG +D +
Sbjct: 130 KPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVY 189
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
+E MK+ C P +T+ LI +G+
Sbjct: 190 FFEEMKSMSCEPDVITYNSLINCFCKSGK 218
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 9/118 (7%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K + +PD+ Y+ +I K+ ++ E + E+K+ GL P+ Y+ ++ + + M+
Sbjct: 195 KSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMM 254
Query: 180 DKAMETYETMKASGCTPHKLTFTIL------IRNLENA---GEEELVAAVRRDCIQYV 228
+A++ Y M+ G P++ T+T L I NL +A E L V + + Y
Sbjct: 255 QQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYT 312
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A+ F + + +P+ ++Y+ MI L K Q+ A LF ++ +EGL PD YT ++
Sbjct: 467 AIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLM 526
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
L+ G + +A+ + M G L +T L+
Sbjct: 527 DGNLKQGNMLEALALRDKMAEIGMKLDLLAYTSLV 561
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ +D AL++ N ++ +PDL LY I L ++I A+ + E+++ G+ +T
Sbjct: 355 KAKNMDRALELLNELKGR-GIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANT 413
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+YT ++ Y + G + + E M+ +TF +LI L
Sbjct: 414 LIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGL 458
Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 95 LLDTLTELRRQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
L+D L + R E A K+F V V P+L+ Y+ +I K K + A EL E
Sbjct: 314 LIDGLCDAERMKE---AEKLFGKMVTAGVI--PNLASYNALIHGFVKAKNMDRALELLNE 368
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
LK G+ PD +Y I + I+ A M+ +G + L +T L+
Sbjct: 369 LKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLM 420
>gi|302780731|ref|XP_002972140.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
gi|300160439|gb|EFJ27057.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
Length = 482
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 5/119 (4%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L++ L + +R L A +VF V K KPD+ YS + L + ++ A ++ C L
Sbjct: 317 LINGLCKAKR---LSQAREVFEEVVKR-QAKPDVVTYSTFMDGLCRAHRVDQARQVLCML 372
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYET-MKASGCTPHKLTFTILIRNLENAG 212
+G PD +YT +I +G +D+A + +E M+A+GC P+ T +L+ AG
Sbjct: 373 VDKGGTPDVVMYTALISGLCSLGRLDEARKVFEVDMRAAGCAPNNFTCNVLVNGFGLAG 431
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 9/157 (5%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
++DTL + + +E +L FN + K+ +P ++ +I L K ++A A+E+F
Sbjct: 212 IIDTLFKKGKIHEAEL---FFNRMEKD-GVRPQEVTFTVLIDGLCKANRVARAKEIFFSY 267
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA--- 211
+ G P + + ++ + + G +D+A +E M GCTP+ ++ ILI L A
Sbjct: 268 LESGGSPSVVICSCLMDGFCKYGGVDEAWRIFELMTNRGCTPNDVSCNILINGLCKAKRL 327
Query: 212 --GEEELVAAVRRDCIQYVEFPERFLEEVYQKHRKTQ 246
E V+R V F++ + + HR Q
Sbjct: 328 SQAREVFEEVVKRQAKPDVVTYSTFMDGLCRAHRVDQ 364
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ +I K K+I A +LF E+K G P T Y +IG +V + +A + YE +
Sbjct: 104 YNILINAFCKTKRIDEAIQLFGEMKAPGCAPSTSTYNTLIGGLCRVERLGEAQQFYERLL 163
Query: 191 ASGCTPHKLTFTILI 205
+SG +T+ IL+
Sbjct: 164 SSGAGASFITYNILV 178
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 91 LKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEEL 150
L ADLL + EL + + LKV + + + L + I L K+ I AE
Sbjct: 32 LPADLL--VRELSKAGRAEECLKVVKLMLDRQQLR-ERHLVNITIDSLCKSDMIDKAESW 88
Query: 151 FCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
F ELK +T Y +I + + ID+A++ + MKA GC P T+ LI L
Sbjct: 89 FQELKDFRGLVNTVSYNILINAFCKTKRIDEAIQLFGEMKAPGCAPSTSTYNTLIGGL 146
>gi|242050480|ref|XP_002462984.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
gi|241926361|gb|EER99505.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
Length = 668
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD Y+ MI GK + A + F +++E ++PD + +I + + G D+AME
Sbjct: 401 RPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEEIEPDVVTWNTLIDAHCKGGRHDRAME 460
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+E M+ S C P T+ I+I L GE+E
Sbjct: 461 LFEEMRESNCPPGTTTYNIMINLL---GEQE 488
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
D A+++F +R E P + Y+ MI +LG+ ++ E + E+K++GL P+ YT
Sbjct: 456 DRAMELFEEMR-ESNCPPGTTTYNIMINLLGEQERWEGVEAMLSEMKEQGLVPNIITYTT 514
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
++ VY + G +A++ E MKA G P + L+ G
Sbjct: 515 LVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRG 558
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 56/104 (53%), Gaps = 4/104 (3%)
Query: 112 LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ---IAMAEELFCELKKEGLDPDTRVYTE 168
L++ + +R E + PDL+ YS ++ L + A+ E L +L++ L+PD ++++
Sbjct: 175 LRLLSLLR-EHDFLPDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSD 233
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+I + + + D A+E + +A G TP T LI L +AG
Sbjct: 234 LISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGSAG 277
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE P++ Y+ ++ + G++ + A + +K +GL P +Y ++ Y Q G+
Sbjct: 501 KEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLA 560
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRN-LENA-GEEELV 217
D A+ + MKA G L +IL+ N L NA GE+ V
Sbjct: 561 DHALNVVKAMKADG-----LEVSILVLNSLINAFGEDRRV 595
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 132 SDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA 191
+ +I G+++++ A + +K+ GL PD YT ++ ++V DK YE M
Sbjct: 583 NSLINAFGEDRRVVEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMIT 642
Query: 192 SGCTPHK 198
SGC P +
Sbjct: 643 SGCAPDR 649
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 117 FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176
F+ E+ KP Y+ ++ + + AE++ E+ + G+ PD Y+ ++ Y +
Sbjct: 290 FLAGEI--KPRTRAYNALLKGYVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRA 347
Query: 177 GMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLE 236
G + A + M+A G P F+ ++ + G+ + AV R+ P+R
Sbjct: 348 GRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFY 407
Query: 237 EV 238
V
Sbjct: 408 NV 409
Score = 36.6 bits (83), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 10/133 (7%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
++DT + N L A+ F+ +R+E +PD+ ++ +I K + A ELF E+
Sbjct: 410 MIDTFG---KYNCLGHAMDAFDRMREEE-IEPDVVTWNTLIDAHCKGGRHDRAMELFEEM 465
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE- 213
++ P T Y MI + + + MK G P+ +T+T L+ +G
Sbjct: 466 RESNCPPGTTTYNIMINLLGEQERWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRY 525
Query: 214 EELVAAVRRDCIQ 226
+E + DCI+
Sbjct: 526 KEAI-----DCIE 533
>gi|255660930|gb|ACU25634.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
Length = 484
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K++ AE+ F E+K+ +DP YT +I Y V +D A+
Sbjct: 183 PDVITYNTMINGYNRVKKMEEAEKYFLEMKERKIDPTVVTYTTLIKGYASVDRVDDALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L NA
Sbjct: 243 VEEMKGLGIKPNAITYSTLLPGLCNA 268
Score = 37.0 bits (84), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 37/75 (49%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y + ++ + + M++ F ++ EG++P + +I + G ++ A +E MK
Sbjct: 118 YDALFKVISRRGRYMMSKRYFNKMVNEGIEPTRHTFNVLIWGFFLSGKVETANRFFEDMK 177
Query: 191 ASGCTPHKLTFTILI 205
+ TP +T+ +I
Sbjct: 178 SREITPDVITYNTMI 192
>gi|225424625|ref|XP_002282301.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial [Vitis vinifera]
gi|296081374|emb|CBI16807.3| unnamed protein product [Vitis vinifera]
Length = 519
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD LY+ ++ L K ++ MA +FC++ + G+ PD Y +I + + +AM
Sbjct: 392 PDRVLYTTIVDHLCKTGKMGMAHSVFCDMVESGITPDVVSYNALINGLCRASRVSEAMHL 451
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
YE M G P ++TF ++I L E++L A R
Sbjct: 452 YEDMHTGGPCPDEVTFKLIIGGL--IWEKKLSVACR 485
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 98 TLTELRRQNELDLALKVF-NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKK 156
+ L R D A++++ N VRK + PD ++L L + ++ +A EL +
Sbjct: 155 VINGLCRAGRFDSAVEIWRNMVRKG--FSPDEKACRALVLGLCHDGKVDLAYELTVGAMR 212
Query: 157 EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ +Y +I + Q G IDKA M+ +GC P +T+ +L+
Sbjct: 213 GRIKFSKSIYNSLINGFCQAGWIDKAQSIISFMRRNGCEPDLVTYNVLL 261
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Query: 88 CRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMA 147
CR+ D + L RQ+ DLA + ++ + + + + YS I L K K +
Sbjct: 40 CRVFSIDYNRFIGVLVRQSRFDLAEQYYDRMIPQGFSLNSFT-YSRFISGLCKVKNFVLI 98
Query: 148 EELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN 207
E+L ++ + G PD Y + + +D A+ +TM G P +T+TI+I
Sbjct: 99 EKLLEDMDRLGYVPDIWAYNIYLNLLCCENQLDVALGVVQTMVEKGREPDIVTYTIVING 158
Query: 208 LENAGEEELVAAVRRDCIQ 226
L AG + + R+ ++
Sbjct: 159 LCRAGRFDSAVEIWRNMVR 177
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 51/106 (48%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ Y+ +I L A +LF E+ +G+ PD +T +I +L+ G + A +
Sbjct: 323 DVVSYNTIIKALCTASHTKRAYKLFEEMGGKGITPDVVTFTILIKAFLREGSSNIAKKLL 382
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
+ M G P ++ +T ++ +L G+ + +V D ++ P+
Sbjct: 383 DQMTGLGLLPDRVLYTTIVDHLCKTGKMGMAHSVFCDMVESGITPD 428
>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Glycine max]
Length = 742
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ MI L + ++ A +LF E+ +GL PD YT +I Y + G + +A
Sbjct: 390 PDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSL 449
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEEL 216
+ M G TP+ +T+T L+ L GE ++
Sbjct: 450 HNQMVEKGLTPNVVTYTALVDGLCKCGEVDI 480
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD +Y+ +I GK+ +++ +LF E+K++ + PD YT MI Q G + +A +
Sbjct: 355 PDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKL 414
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+ M + G P ++T+T LI AGE
Sbjct: 415 FSEMLSKGLKPDEVTYTALIDGYCKAGE 442
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 48/88 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+ ++ L K ++ +A EL E+ ++GL P+ Y +I +VG I++A++
Sbjct: 460 PNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKL 519
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
E M +G P +T+T ++ GE
Sbjct: 520 MEEMDLAGFFPDTITYTTIMDAYCKMGE 547
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP+ Y+ +I L K ++ AE++ +K + + PD VYT +I + + G + +
Sbjct: 319 KPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYK 378
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
++ MK P +T+T +I L AG+
Sbjct: 379 LFDEMKRKKIVPDFVTYTSMIHGLCQAGK 407
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ +I L K I A +L E+ G PDT YT ++ Y ++G + KA E
Sbjct: 494 QPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHE 553
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
M G P +TF +L+ +G
Sbjct: 554 LLRIMLDKGLQPTIVTFNVLMNGFCMSG 581
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD Y+ +I K ++ A L ++ ++GL P+ YT ++ + G +D A E
Sbjct: 424 KPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANE 483
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
M G P+ T+ LI L G E
Sbjct: 484 LLHEMSEKGLQPNVCTYNALINGLCKVGNIE 514
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ YS ++ + +Q+ +L EL+++GL P+ Y +I + G + +A +
Sbjct: 285 PDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQV 344
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
MK P + +T LI +G
Sbjct: 345 LRVMKNQRIFPDNVVYTTLISGFGKSGN 372
>gi|357143144|ref|XP_003572818.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Brachypodium distachyon]
Length = 496
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ +I LG Q+ A +LF E+ KEG P Y +I V + G ++ A+
Sbjct: 276 KPDVVSYTTIIHGLGVAGQLDKARKLFDEMSKEGCPPTIATYNALIQVICKKGNVEDAVT 335
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
++ M P+ +T+T+LIR L + G+
Sbjct: 336 VFDDMIRKDYIPNVVTYTVLIRGLCHVGK 364
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
+LD A K+F+ + KE P ++ Y+ +I ++ K + A +F ++ ++ P+
Sbjct: 293 GQLDKARKLFDEMSKE-GCPPTIATYNALIQVICKKGNVEDAVTVFDDMIRKDYIPNVVT 351
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
YT +I VG ID+AM+ E MK GC P T+ +LIR GE
Sbjct: 352 YTVLIRGLCHVGKIDRAMKLMERMKNEGCEPVVQTYNVLIRYSFEEGE 399
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 7/137 (5%)
Query: 104 RQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
++ ++ A+ VF+ +RK+ Y P++ Y+ +I L +I A +L +K EG +P
Sbjct: 326 KKGNVEDAVTVFDDMIRKD--YIPNVVTYTVLIRGLCHVGKIDRAMKLMERMKNEGCEPV 383
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETM-KASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
+ Y +I + G +DKA+ +E M K C P++ T+ I+I + E +A
Sbjct: 384 VQTYNVLIRYSFEEGEMDKALHLFERMSKGEECLPNQDTYNIVISAMFVRKRAEDMAIAA 443
Query: 222 RDCIQYVE---FPERFL 235
R ++ VE P RF+
Sbjct: 444 RMVMEMVERGYLPRRFM 460
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
Q D+A+++F + + DL L++ ++ LGK++ + A L L++ PD
Sbjct: 147 QRRPDIAVRLFLSLHRSHRVAQDLPLFNSLLDALGKSRHASKAASLVRALERR-FPPDVV 205
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
Y + + +V +A++ M SG P K T+ ++++ AG+
Sbjct: 206 TYNTLADGWCRVKDTSRALDLLRQMAESGIAPTKTTYNVILKGFFRAGQ 254
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 5/117 (4%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG-----LDPDTRVYTEMIGVYLQ 175
E P + Y+ ++ + Q+ A F ++KK G PD YT +I
Sbjct: 232 ESGIAPTKTTYNVILKGFFRAGQLQHAWNFFLQMKKRGSKDENCKPDVVSYTTIIHGLGV 291
Query: 176 VGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
G +DKA + ++ M GC P T+ LI+ + G E V D I+ P
Sbjct: 292 AGQLDKARKLFDEMSKEGCPPTIATYNALIQVICKKGNVEDAVTVFDDMIRKDYIPN 348
>gi|302813971|ref|XP_002988670.1| hypothetical protein SELMODRAFT_128601 [Selaginella moellendorffii]
gi|300143491|gb|EFJ10181.1| hypothetical protein SELMODRAFT_128601 [Selaginella moellendorffii]
Length = 318
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 1/134 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L + +EL +LKVF+ + PD+ Y ++ L K + MA F +KK G
Sbjct: 16 IKNLVKDSELTKSLKVFHMFEADQL-SPDVGTYHYIVSGLCKANKTKMAAMYFEGMKKLG 74
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
L PDT Y+ MI Y + G +++A++ +E MK F L+R + + + LV
Sbjct: 75 LLPDTMTYSTMIDCYGRAGKVNRALQLFEEMKRKNVRLDTRVFNSLLRAVGTSYKPSLVY 134
Query: 219 AVRRDCIQYVEFPE 232
+ R+ + + P+
Sbjct: 135 NIFREMQYFGQVPD 148
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ +IL LG + A L ++G++ + + + ++ + +I+ A
Sbjct: 181 KPDIYTYTAIILCLGNAGRTKSAYNFMQGLLRKGVEVNVKTWNALLRGLTKEDVIEVAFS 240
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
Y MKA G P T+++L+ N + + V ++RD
Sbjct: 241 VYNDMKARGFKPDNTTYSLLLENSIALRDAKKVYRIQRD 279
>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
and contains a RepB PF|01051 protein and multiple PPR
PF|01535 repeats [Arabidopsis thaliana]
Length = 613
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 8/131 (6%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LLD L + +L+ AL VF +++K +PD+ Y+ MI + K ++ +LFC L
Sbjct: 455 LLDGLC---KYGKLEKALVVFEYLQKSKM-EPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 510
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI----RNLEN 210
+G+ P+ +YT MI + + G+ ++A + MK G P+ T+ LI R+ +
Sbjct: 511 SLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDK 570
Query: 211 AGEEELVAAVR 221
A EL+ +R
Sbjct: 571 AASAELIKEMR 581
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
P++ +S +I K ++ AE+L+ E+ K +DPD Y+ +I + +D+A
Sbjct: 306 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH 365
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
+E M + C P+ +T+ LI+
Sbjct: 366 MFELMISKDCFPNVVTYNTLIKGF 389
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+ +I K K++ ELF E+ + GL +T Y +I Q G D A +
Sbjct: 377 PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKI 436
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ M + G P +T++IL+ L G+ E
Sbjct: 437 FKKMVSDGVPPDIITYSILLDGLCKYGKLE 466
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PDL Y ++ L K I +A L +++K ++ D +YT +I ++ A+
Sbjct: 201 QPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALN 260
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ M G P+ +T+ LIR L N G
Sbjct: 261 LFTEMDNKGIRPNVVTYNSLIRCLCNYG 288
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 46/85 (54%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ +I L + MA+++F ++ +G+ PD Y+ ++ + G ++KA+ +E ++
Sbjct: 417 YNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQ 476
Query: 191 ASGCTPHKLTFTILIRNLENAGEEE 215
S P T+ I+I + AG+ E
Sbjct: 477 KSKMEPDIYTYNIMIEGMCKAGKVE 501
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + + D+A K+F + + PD+ YS ++ L K ++ A +F L+K ++P
Sbjct: 424 LFQAGDCDMAQKIFKKMVSD-GVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEP 482
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
D Y MI + G ++ + + ++ G P+ + +T +I G +E A+
Sbjct: 483 DIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALF 542
Query: 222 RD 223
R+
Sbjct: 543 RE 544
Score = 37.0 bits (84), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+++L LAL V + K + Y+PD+ S ++ K+I+ A L ++ P+T
Sbjct: 111 RRSQLPLALAVLGKMMK-LGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNT 169
Query: 164 RVYTEMI-GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+ +I G++L +A+ + M A GC P T+ ++ L G+ +L ++
Sbjct: 170 VTFNTLIHGLFLH-NKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSL 226
>gi|307103654|gb|EFN51912.1| hypothetical protein CHLNCDRAFT_59068 [Chlorella variabilis]
Length = 1025
Score = 58.5 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ NELDLAL V+ + E P+L Y+ +I + GK A + L+++G+DP+
Sbjct: 242 KGNELDLALDVYRQMLAE-GCTPNLVTYNTLIDVYGKTGAWEEAIRVLDALERQGIDPEI 300
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
R Y +I G +A+ YE M A+G P T+T LI G+ + + +D
Sbjct: 301 RTYNTVIIACNMSGQAQEALRIYERMLAAGAQPTATTYTALISAYGKNGQLDRALQIFQD 360
Query: 224 CIQ 226
++
Sbjct: 361 MVR 363
Score = 57.4 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 104 RQNELDLALKVF-NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
+ +LD AL++F + VR+ + ++ YS +I K + +A ELF E+ EG P+
Sbjct: 347 KNGQLDRALQIFQDMVRRGC--ERNVITYSSLISACEKAGRWELALELFREMHTEGCRPN 404
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
Y +I Q +KA E +E M+ GC P +TF LI + AG
Sbjct: 405 VVTYNSLIAACAQGAQWEKAQEMFEQMQHRGCKPDAVTFGGLIAAYDRAG 454
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 59/112 (52%), Gaps = 5/112 (4%)
Query: 99 LTELRRQNELDLALKVFNFVR-----KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
L EL + + A ++F+++R +++ + Y+ MI G +Q+ A EL E
Sbjct: 161 LKELNKSGHVRRAQELFDWLRGLDDSHDLYPLCNTMTYTTMISQCGTQQQLRRALELVAE 220
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
++ G+ + Y+ ++ V ++ +D A++ Y M A GCTP+ +T+ LI
Sbjct: 221 MRSRGIQCNVHTYSALMNVCIKGNELDLALDVYRQMLAEGCTPNLVTYNTLI 272
Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
+LAL++F + E +P++ Y+ +I + Q A+E+F +++ G PD +
Sbjct: 387 ELALELFREMHTE-GCRPNVVTYNSLIAACAQGAQWEKAQEMFEQMQHRGCKPDAVTFGG 445
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+I Y + G +A+ +E MKA C P + + ++ L G
Sbjct: 446 LIAAYDRAGHWRRALTAFEQMKAHNCRPDSVVYNTIVGALWKTG 489
Score = 47.4 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 43/81 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P + Y+ +I GKN Q+ A ++F ++ + G + + Y+ +I + G + A+E
Sbjct: 332 QPTATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNVITYSSLISACEKAGRWELALE 391
Query: 185 TYETMKASGCTPHKLTFTILI 205
+ M GC P+ +T+ LI
Sbjct: 392 LFREMHTEGCRPNVVTYNSLI 412
>gi|302789998|ref|XP_002976767.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
gi|300155805|gb|EFJ22436.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
Length = 669
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 96 LDTLTEL-RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L L E+ R D A +V+ ++ E W K D+++Y+ ++ + ++ AE++ E+
Sbjct: 321 LSILVEMYTRVGAYDQAFEVYETLKTEGW-KCDVAVYNSLMKACVEGGRVEQAEDILKEM 379
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
K+ G +PD Y + Y GM+D A ++ + A P FT++IR + AGE
Sbjct: 380 KRAGCNPDHLTYRTAMNTYATKGMVDPARRMFDKVVALNGKPDTPLFTVMIRACKLAGEI 439
Query: 215 E 215
E
Sbjct: 440 E 440
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 80/164 (48%), Gaps = 6/164 (3%)
Query: 44 GLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELR 103
G A+ K + R + + + +K+ + + +E +S L +++ L +
Sbjct: 61 GESSASAKTIPRYTKWTPQFARVDEVLKIVQKTGNVEAALESWDKSLSAKNIVTVLNNIN 120
Query: 104 RQNELDLALKVFNFV--RKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
R + AL F ++ R E+ Y+ + Y+ M+ +L +Q+ ++E+L E+ G+ P
Sbjct: 121 RWEK---ALAFFEWLKARPEL-YEINRYTYNVMLKILRNGRQLELSEKLVEEMTGRGIQP 176
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
D ++ +I + ++A++ +E MK+ G P ++T+ +I
Sbjct: 177 DNYTFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVI 220
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 103 RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
+R + + ALK F ++ E PD Y+ +I M G+ ++ A EL+ +LK D
Sbjct: 189 KRCRQPEEALKWFERMKSEG-IVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLD 247
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
T Y + VY + G M+ + M+ SG +P+ + L+ L AG+
Sbjct: 248 TVTYGAIANVYARAGDYQSIMQLVQEMRDSGSSPNAVIMNTLMGTLSKAGK 298
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD +S +I + +Q A + F +K EG+ PD Y +I +Y +VG +++A+E
Sbjct: 175 QPDNYTFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGRVNEAVE 234
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
YE +K+ +T+ + AG+
Sbjct: 235 LYEKLKSVNWKLDTVTYGAIANVYARAGD 263
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+ + + ++ L K ++ A+++F E++ G+ P + ++ +Y +VG D+A E
Sbjct: 281 PNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEV 340
Query: 186 YETMKASG 193
YET+K G
Sbjct: 341 YETLKTEG 348
>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
Length = 1636
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 1/130 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ N LD A K+ + KE PD+ YS +I L K + A ++F E+ G P+
Sbjct: 557 KDNNLDSAFKMLERM-KEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNL 615
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
Y +I ++ +++A E E M+ CTP +T+T LI L NA E V R+
Sbjct: 616 VTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLRE 675
Query: 224 CIQYVEFPER 233
P+R
Sbjct: 676 MKDKGCLPDR 685
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ LD AL++ + + Y PD+ +S I L K ++ A EL + + GL PDT
Sbjct: 1311 KTGNLDKALEILQLLLSKGSY-PDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDT 1369
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL-ENAGEEELVAAVRR 222
Y ++ + + + A++ +E M+ GC P T+T L+ +L + ++L+A V +
Sbjct: 1370 VTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSK 1429
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
++D L + RR N+ A +F+ +R PD+ YS +I K+ + A ++ +
Sbjct: 516 VVDGLCKSRRIND---AFLLFDRMRA-AGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERM 571
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
K+ PD Y+ +I + G +DKA + ++ M GC P+ +T+ LI L
Sbjct: 572 KEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGL 625
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+L Y+ +I L K ++ A E+ ++K+ PD+ YT +I +++A
Sbjct: 613 PNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRV 672
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELV 217
MK GC P ++T+ L+R L+ ELV
Sbjct: 673 LREMKDKGCLPDRMTYGTLLRALQKTNNLELV 704
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ ++ L K+++I A LF ++ G+ PD Y+ +I + + +D A +
Sbjct: 508 PDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKM 567
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
E MK + C P +T++ LI L AG
Sbjct: 568 LERMKEAKCVPDVVTYSALINGLCKAG 594
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ YS ++ L K ++ A L + + G P+ Y +I + ++G ID+A
Sbjct: 981 PNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHL 1040
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
E M GC P+ +T+T+L+ G+ E
Sbjct: 1041 LEEMVDGGCQPNVVTYTVLLDAFCKCGKAE 1070
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 53/99 (53%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
+LD AL++F + + PD+ YS ++ L K+ ++ A L ++ +G P+ Y
Sbjct: 927 KLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTY 986
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ ++ + G +D+A + M SGC+P+ +T+ +I
Sbjct: 987 SSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTII 1025
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEG-LDPDTRVYTEMIGVYLQVGMIDKAMET 185
++ L++ +I L +++ A ELF E+++ G PD Y+ ++ ++ G +D A
Sbjct: 911 NVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRL 970
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE-EELVAAVRR 222
E M + GC+P+ +T++ L+ L AG+ +E A ++R
Sbjct: 971 VEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQR 1008
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I L K+K++ A +LF ++ +GL PD Y+ +I + +D+A
Sbjct: 1227 PDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNV 1286
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
E M +G P +T+ LI G
Sbjct: 1287 LELMLKNGFDPGAITYGTLIDGFCKTGN 1314
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD YS +I L K + + A + + K G DP Y +I + + G +DKA+E
Sbjct: 1262 PDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEI 1321
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ + + G P +TF+I I L G
Sbjct: 1322 LQLLLSKGSYPDVVTFSIFIDWLSKRG 1348
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ YS +I L K K++ AE + K PD Y ++ + I+ A
Sbjct: 473 PDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLL 532
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
++ M+A+G P +T++I+I +
Sbjct: 533 FDRMRAAGVMPDVVTYSIVIHSF 555
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 10/128 (7%)
Query: 104 RQNELDLALKVFNFVRK--EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
R +LD A+++ VRK E Y+P+ Y++++ + + + A ++ + + G P
Sbjct: 347 RVGDLDGAVEL---VRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPP 403
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA-----GEEEL 216
D Y+ +I + + G + +A + E M GC P + LI L A +E L
Sbjct: 404 DAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELL 463
Query: 217 VAAVRRDC 224
++ DC
Sbjct: 464 RMSIGMDC 471
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L + + LD A+++ + + P++ Y+ ++ K ++ A L ++ G
Sbjct: 237 INGLSKSDRLDDAIRLLEEMVDN-GFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRG 295
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
PD YT +I ++ +D+A + M GC P+ +T+ L+ G+
Sbjct: 296 CPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGD 350
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+N+++ A +V + + PD YS +I K ++ A +L ++ + G PD
Sbjct: 382 RRNDMERAHQVLQMM-IQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDV 440
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
+ +I + ID A E C P + ++ILI L A
Sbjct: 441 ACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKA 488
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 118 VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177
V E Y P+L Y+ ++ M K ++ A +L + ++G P+ Y +I +
Sbjct: 1078 VMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKAT 1137
Query: 178 MIDKAMETYETMKASGCTPHKLTFTILI 205
+ + + E M ++ C P +TF +I
Sbjct: 1138 KVHEGVLLLEQMLSNNCVPDIVTFNTII 1165
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 39/83 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+ +I L K ++ L ++ PD + +I + +D A E
Sbjct: 1121 PNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYEL 1180
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ ++ SGCTP+ +T+ L+ L
Sbjct: 1181 FNLIQESGCTPNLVTYNSLVHGL 1203
>gi|334186712|ref|NP_001190774.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
gi|223635614|sp|P0C8Q3.1|PP326_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19890
gi|332658842|gb|AEE84242.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
Length = 701
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+QN+++ AL F + K ++ D+ L + +I + K++ +E LF + GL P
Sbjct: 475 KQNDINQALAFFCRMNK-TGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTK 533
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
YT MI Y + G ID A++ + MK GC P T+ LI L
Sbjct: 534 ETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGL 578
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 111 ALKVF-NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
A ++F VR + YKP++ Y+ MI K ++ AE LF +K++GL P+ YT +
Sbjct: 341 AFRLFLKLVRSDT-YKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTL 399
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
I + + G +A E M G P+ T+ I +L
Sbjct: 400 INGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSL 438
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P Y+ MI K I +A + F +K+ G PD+ Y +I + M+D+A +
Sbjct: 531 PTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKL 590
Query: 186 YETMKASGCTPHKLT 200
YE M G +P ++T
Sbjct: 591 YEAMIDRGLSPPEVT 605
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCEL-KKEGLDPDTRVYTEMIGVYLQVGMIDKA 182
+KP++ ++ +I L K A LF +L + + P+ YT MIG Y + +++A
Sbjct: 318 WKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRA 377
Query: 183 METYETMKASGCTPHKLTFTILIRNLENAG 212
+ MK G P+ T+T LI AG
Sbjct: 378 EMLFSRMKEQGLFPNVNTYTTLINGHCKAG 407
>gi|255584056|ref|XP_002532772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527482|gb|EEF29611.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 647
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L + LD AL+ F + + YS +I LGK+ ++ AE +F E+ K+G
Sbjct: 396 VNSLCKSGRLDEALEYMEFCSGK-GVAVNAMFYSSLIDGLGKSGRVDEAERIFYEMVKKG 454
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL--ENAGEEEL 216
PD+ Y +I + G ID+A+ + M+ GC T+TILI L E+ EE L
Sbjct: 455 CPPDSYCYNALIDALAKCGKIDEALALSKRMEVDGCDQTVYTYTILITGLFREHRNEEAL 514
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE +P L Y+ ++ L +K I AE +F ++ + PD Y MI Y +VG
Sbjct: 206 KENGIEPSLFSYNFLVNGLVNSKFIESAERVFEVMENGKIGPDVVTYNTMIKGYCEVGKT 265
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
KA E + M+ P K+T+ LI+ G+
Sbjct: 266 RKAFEKLKAMELRNVAPDKITYMTLIQACYAEGD 299
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
K ++++Y+ +I K + A LF +KKEGL+PD Y ++ + G +D+A+E
Sbjct: 351 KANVAIYTALIDSNAKCGNMGEAMLLFKRMKKEGLEPDEVTYGVIVNSLCKSGRLDEALE 410
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
E G + + ++ LI L +G
Sbjct: 411 YMEFCSGKGVAVNAMFYSSLIDGLGKSG 438
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Query: 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM 189
+YS +I L K+ + +F + +G + +YT +I + G + +AM ++ M
Sbjct: 321 VYSLVIGGLCKDGKRVEGYTVFENMISKGCKANVAIYTALIDSNAKCGNMGEAMLLFKRM 380
Query: 190 KASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEF 230
K G P ++T+ +++ +L +G + + ++Y+EF
Sbjct: 381 KKEGLEPDEVTYGVIVNSLCKSGRLD-------EALEYMEF 414
>gi|5738362|emb|CAB52870.1| putative protein [Arabidopsis thaliana]
gi|7268785|emb|CAB78991.1| putative protein [Arabidopsis thaliana]
Length = 1302
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+QN+++ AL F + K ++ D+ L + +I + K++ +E LF + GL P
Sbjct: 1076 KQNDINQALAFFCRMNK-TGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTK 1134
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
YT MI Y + G ID A++ + MK GC P T+ LI L
Sbjct: 1135 ETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGL 1179
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 111 ALKVF-NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
A ++F VR + YKP++ Y+ MI K ++ AE LF +K++GL P+ YT +
Sbjct: 942 AFRLFLKLVRSDT-YKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTL 1000
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
I + + G +A E M G P+ T+ I +L
Sbjct: 1001 INGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSL 1039
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P Y+ MI K I +A + F +K+ G PD+ Y +I + M+D+A +
Sbjct: 1132 PTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKL 1191
Query: 186 YETMKASGCTPHKLTFTIL 204
YE M G +P ++T L
Sbjct: 1192 YEAMIDRGLSPPEVTRVTL 1210
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCEL-KKEGLDPDTRVYTEMIGVYLQVGMIDKA 182
+KP++ ++ +I L K A LF +L + + P+ YT MIG Y + +++A
Sbjct: 919 WKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRA 978
Query: 183 METYETMKASGCTPHKLTFTILIRNLENAG 212
+ MK G P+ T+T LI AG
Sbjct: 979 EMLFSRMKEQGLFPNVNTYTTLINGHCKAG 1008
>gi|159465707|ref|XP_001691064.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
gi|158279750|gb|EDP05510.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
Length = 630
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
YS +I K Q A +F E++++ P+T Y ++ Q G +KA E +E M
Sbjct: 246 YSSLISACEKAGQWETALRIFNEMQQDNCVPNTVTYNSLVTACAQGGQWEKATEVFEQMT 305
Query: 191 ASGCTPHKLTFTILIRNLENAGE-EELVAAVRRDCIQ 226
A GCTP +T+T LI E G+ ++ + A + C+Q
Sbjct: 306 AHGCTPDVVTYTALISAYERGGQWQKALQAFGKMCMQ 342
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ + + + AL++FN ++++ P+ Y+ ++ + Q A E+F ++ G
Sbjct: 250 ISACEKAGQWETALRIFNEMQQDNCV-PNTVTYNSLVTACAQGGQWEKATEVFEQMTAHG 308
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
PD YT +I Y + G KA++ + M GC P + + +I L G
Sbjct: 309 CTPDVVTYTALISAYERGGQWQKALQAFGKMCMQGCKPDAIVYNAIIDTLWETG 362
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 56/123 (45%), Gaps = 9/123 (7%)
Query: 102 LRRQNELDLALKVFNFVRKEV---------WYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
LR N L +A + N R+ + Y P+ + Y+ +I GK Q+ A E++
Sbjct: 173 LRTYNTLIIACNMCNQPREALAVYQRLLSDGYTPNSTTYNALISAYGKTMQLGKALEVYQ 232
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
E+ ++ ++ Y+ +I + G + A+ + M+ C P+ +T+ L+ G
Sbjct: 233 EMLRQNMERSVITYSSLISACEKAGQWETALRIFNEMQQDNCVPNTVTYNSLVTACAQGG 292
Query: 213 EEE 215
+ E
Sbjct: 293 QWE 295
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 59/112 (52%), Gaps = 5/112 (4%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKP-----DLSLYSDMILMLGKNKQIAMAEELFCE 153
L +L R + A+++F+++R P D+ Y+ I + ++ + A EL E
Sbjct: 34 LKDLSRLGKDRRAMELFDWLRSANERSPLRQLCDVYSYTATISLCIYSQDVDRAMELMNE 93
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+++ ++ + +T ++ V ++ G + A+E Y M+A+ C P+ +T+ L+
Sbjct: 94 MRQRNIERNVHTFTALMNVCIKCGKLPLALEIYNNMRAANCMPNVVTYNTLV 145
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 4/121 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D +L R + A+ V + +++E +P L Y+ +I+ Q A ++ L
Sbjct: 144 LVDVYGKLGR---WERAIHVLDLMKQE-GVEPVLRTYNTLIIACNMCNQPREALAVYQRL 199
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
+G P++ Y +I Y + + KA+E Y+ M +T++ LI E AG+
Sbjct: 200 LSDGYTPNSTTYNALISAYGKTMQLGKALEVYQEMLRQNMERSVITYSSLISACEKAGQW 259
Query: 215 E 215
E
Sbjct: 260 E 260
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
+L LAL+++N +R P++ Y+ ++ + GK + A + +K+EG++P R
Sbjct: 117 GKLPLALEIYNNMRAAN-CMPNVVTYNTLVDVYGKLGRWERAIHVLDLMKQEGVEPVLRT 175
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y +I +A+ Y+ + + G TP+ T+ LI
Sbjct: 176 YNTLIIACNMCNQPREALAVYQRLLSDGYTPNSTTYNALI 215
>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 821
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R +LD A +VF+ + K+ P+ YS +I L +I A ++ E+ ++G++P
Sbjct: 244 RNRKLDKAFEVFDRMVKD-GCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTV 302
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
YT I +G +D A+ +M GC+P T+T +I L AG+ EL +
Sbjct: 303 YTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGM 359
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%)
Query: 115 FNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYL 174
F ++ KE +PD Y ++I K ++ A F E+ K G+ P+ YT MI Y
Sbjct: 464 FLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYC 523
Query: 175 QVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209
+ G ID A+ +E M+ +GC+ T+ +I L
Sbjct: 524 KEGKIDVALSLFERMEENGCSASIETYNAIISGLS 558
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP L ++ MI +L K ++ A +F ++ + L PD YT +I + + +DKA E
Sbjct: 194 KPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFE 253
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
++ M GC P+ +T++ LI L N G
Sbjct: 254 VFDRMVKDGCNPNSVTYSTLINGLCNEG 281
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ +IL +N+++ A E+F + K+G +P++ Y+ +I G I +AM+
Sbjct: 230 PDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDM 289
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE-EELVAAVR 221
E M G P T+T+ I +L + G ++ + VR
Sbjct: 290 LEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVR 326
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 14/155 (9%)
Query: 60 SSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVR 119
S+EA Q V MK S +E C LL A + ++D AL++FN +
Sbjct: 664 SNEASQLVENMKEKGLSPSME-----IYCSLLVAHC--------KSLKVDCALEIFNLMA 710
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+ ++P L +Y +I L + A +F L K+ + D V+T ++ LQ G
Sbjct: 711 VK-GFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLIVWTVLVDGLLQEGDS 769
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
D M+ M++ CTP T+ IL R L G+
Sbjct: 770 DLCMKFLYLMESRNCTPSLHTYIILARELSKVGKS 804
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
++ ++D+AL +F + +E + Y+ +I L K + + AE+ ++ ++GL P+T
Sbjct: 524 KEGKIDVALSLFERM-EENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNT 582
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
YT +I + + A + + M+ C P+ T+T LI L G+
Sbjct: 583 ITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGK 632
Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
++++ A+ VFN + K+ P + Y+ +I+ K + A +K+ +PD R
Sbjct: 421 DDIEKAMVVFNKMLKD-GPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERT 479
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y E+I + + G +D A + M G +P++ T+T +I
Sbjct: 480 YCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMI 519
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P + YS ++ L + + A +L +K++GL P +Y ++ + + +D A+E
Sbjct: 645 EPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALE 704
Query: 185 TYETMKASGCTPHKLTFTILI 205
+ M G PH + +LI
Sbjct: 705 IFNLMAVKGFQPHLFIYKVLI 725
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ EL + +ALK+F+++ + Y+ +I L I A +F ++ K+G
Sbjct: 379 INELCTEGRFGIALKIFDWMEGHGTLA-NAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDG 437
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
P Y +I L+ G ++ A MK S C P + T+ LI G+
Sbjct: 438 PSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGK 492
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 23/149 (15%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD--TRVY 166
D AL+ F ++ K +YK D+ + M+ L K+K +A A+ + + K + D RV
Sbjct: 85 DTALQFFYWISKRHFYKHDMGCFVSMLNRLVKDKILAPADHVRILMIKACRNEDELKRVT 144
Query: 167 TEMIGV------------------YLQVG---MIDKAMETYETMKASGCTPHKLTFTILI 205
+ G+ LQ+G M+ A Y + +SG P LTF +I
Sbjct: 145 DFLHGISSSDSGLFGFTLYSFNTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMI 204
Query: 206 RNLENAGEEELVAAVRRDCIQYVEFPERF 234
L G+ + V Q+ P+ F
Sbjct: 205 NILCKKGKVQEAVLVFNKIFQFDLCPDAF 233
Score = 36.6 bits (83), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P + Y+ I L ++ A L + K+G P + YT +I + G ++ A+
Sbjct: 299 EPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIG 358
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
Y M G P+ +T+ LI L G
Sbjct: 359 MYHKMLKEGLVPNTVTYNALINELCTEG 386
>gi|242077154|ref|XP_002448513.1| hypothetical protein SORBIDRAFT_06g028250 [Sorghum bicolor]
gi|241939696|gb|EES12841.1| hypothetical protein SORBIDRAFT_06g028250 [Sorghum bicolor]
Length = 718
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R +LD ++++ +R+ +P LY+ ++ ++ ++ MA +LF +++K G P
Sbjct: 277 LVRSGKLDAGMELWEEMRRG-GLRPSFGLYTMVVEANARSGRLDMAAKLFGDMEKSGFFP 335
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
Y ++ ++ G +D AM Y +M +G P TFT L+ L N +L A V
Sbjct: 336 TPATYACLVEMHASAGQVDAAMRLYHSMANAGTRPGLSTFTALLTMLANKRLLDLAAKV 394
>gi|302782654|ref|XP_002973100.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
gi|300158853|gb|EFJ25474.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
Length = 674
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 96 LDTLTEL-RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L L E+ R D A +V+ ++ E W K D+++Y+ ++ + ++ AE++ E+
Sbjct: 321 LSILVEMYTRVGAYDQAFEVYETLKTEGW-KCDVAVYNSLMKACVEGGRVEQAEDILKEM 379
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
K+ G +PD Y + Y GM+D A ++ + A P FT++IR + AGE
Sbjct: 380 KRAGCNPDHLTYRTAMNTYATKGMVDPARRMFDKVVALNGKPDTPLFTVMIRACKLAGEI 439
Query: 215 E 215
E
Sbjct: 440 E 440
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 80/164 (48%), Gaps = 6/164 (3%)
Query: 44 GLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELR 103
G A+ K + R + + + +K+ + + +E +S L +++ L +
Sbjct: 61 GESSASAKTIPRYTKWTPQFARVDEVLKILQKTGNVEAALESWDKSLSAKNIVTVLNNIN 120
Query: 104 RQNELDLALKVFNFV--RKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
R + AL F ++ R E+ Y+ + Y+ M+ +L +Q+ ++E+L E+ G+ P
Sbjct: 121 RWEK---ALAFFEWLKARPEL-YEINRYTYNVMLKILRNGRQLELSEKLVEEMTGRGIQP 176
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
D ++ +I + ++A++ +E MK+ G P ++T+ +I
Sbjct: 177 DNYTFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVI 220
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 103 RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
+R + + ALK F ++ E PD Y+ +I M G+ ++ A EL+ +LK D
Sbjct: 189 KRCRQPEEALKWFERMKSEG-IVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLD 247
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
T Y + VY + G ++ + M+ SG +P+ + L+ L AG+
Sbjct: 248 TVTYGAIANVYARAGDYQSIIQLVQEMRDSGSSPNAVIMNTLMGTLSKAGK 298
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD +S +I + +Q A + F +K EG+ PD Y +I +Y +VG +++A+E
Sbjct: 175 QPDNYTFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGRVNEAVE 234
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
YE +K+ +T+ + AG+
Sbjct: 235 LYEKLKSVNWKLDTVTYGAIANVYARAGD 263
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+ + + ++ L K ++ A+++F E++ G+ P + ++ +Y +VG D+A E
Sbjct: 281 PNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEV 340
Query: 186 YETMKASG 193
YET+K G
Sbjct: 341 YETLKTEG 348
>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g22470, mitochondrial-like [Glycine max]
Length = 468
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 67/127 (52%), Gaps = 8/127 (6%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LLD L + QN LD A +F KE +P + Y+ +I L K ++ A+ELF L
Sbjct: 329 LLDALC--KNQN-LDKATALF-MKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHL 384
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL----EN 210
+G D YT MI + GM D+A+ M+ +GC P+ +TF I+IR+L EN
Sbjct: 385 LVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDEN 444
Query: 211 AGEEELV 217
E+L+
Sbjct: 445 DKAEKLL 451
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ Y+ ++ L KN+ + A LF ++K+ G+ P YT +I + G + A E +
Sbjct: 322 DVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELF 381
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR-----RDCIQYVEFPERFLEEVYQK 241
+ + GC T+T++I L G + A++ CI E + +++K
Sbjct: 382 QHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEK 441
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 38/87 (43%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ +I L K+ +I A L E+ G D YT ++ + +DKA
Sbjct: 286 PDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATAL 345
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ MK G P T+T LI L G
Sbjct: 346 FMKMKERGIQPTMYTYTALIDGLCKGG 372
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L + E A+K+ + +P++ +YS +I L K+K + A +L+ E+
Sbjct: 122 LNGLCKTGETRCAIKLLRMIEDRST-RPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDARE 180
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
+ P+ Y +I + G + A M P TF+ILI L G+
Sbjct: 181 IFPNVITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEGKN 236
>gi|357465315|ref|XP_003602939.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491987|gb|AES73190.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 586
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL-KKEGLDPD 162
R+ ++D A +V +R + P++ YS ++ L +N ++ A ELF E+ K+ + PD
Sbjct: 285 RRGDIDSAFEVVKEMRNSKYSYPNVITYSTLMDGLCRNGRLKEAFELFEEMVSKDQIVPD 344
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
Y +I + + G D+A E MK +GC P+ ++ L+ L AG+
Sbjct: 345 PLTYNVLINGFCREGKADRARNVIEFMKNNGCCPNVFNYSALVDGLCKAGK 395
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+ + D A V F++ P++ YS ++ L K ++ A+ + E+K GL PD
Sbjct: 357 REGKADRARNVIEFMKNNGCC-PNVFNYSALVDGLCKAGKLQDAKGVLAEMKSSGLKPDA 415
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
YT +I + + G ID+A+E MK + C +TF +++ L G
Sbjct: 416 ITYTSLINFFSRNGQIDEAIELLTEMKENDCQADTVTFNVILGGLCREG 464
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD Y+ +I +N QI A EL E+K+ DT + ++G + G D+A++
Sbjct: 412 KPDAITYTSLINFFSRNGQIDEAIELLTEMKENDCQADTVTFNVILGGLCREGRFDEALD 471
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
E + G +K ++ I++ +L
Sbjct: 472 MIEKLPQQGVYLNKGSYRIVLNSL 495
>gi|255660946|gb|ACU25642.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
Length = 484
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K++ AE+ F E+K ++P YT +I Y+ V +D A+
Sbjct: 183 PDVVTYNTMIXGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L NA
Sbjct: 243 VEEMKGFGIKPNAITYSTLLPGLCNA 268
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+ +A + FN + E +P ++ MI + ++ A F ++K + PD
Sbjct: 127 RRGRYMMAKRYFNKMLSE-GNEPTRHTFNIMIWGFFLSGKVETANRFFEDMKSREIMPDV 185
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
Y MI Y +V +++A + + MK P +T+T LI+
Sbjct: 186 VTYNTMIXGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIK 228
>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
Length = 1153
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 5/131 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+DTL R N+ L F + E+ +PDL +Y+ +I LGK+++I A LF E+
Sbjct: 954 LIDTLCTAGRLND---GLSYFRQLL-ELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEM 1009
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
KK+G+ P+ Y +I + G +A + YE + G P+ T+ LIR +G
Sbjct: 1010 KKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEELLIKGWKPNVFTYNALIRGYSVSGST 1069
Query: 215 ELVAAVRRDCI 225
+ A DC+
Sbjct: 1070 DNAYAA-YDCV 1079
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 71/174 (40%), Gaps = 23/174 (13%)
Query: 62 EAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTEL-RRQNELDLALKVFNFVRK 120
EA+ MK K S + + S I LKAD+ D EL N + + V
Sbjct: 371 EALAVFDEMK-EKGISPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLF 429
Query: 121 EVWYK---------------------PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGL 159
+Y PD++ + ++ L ++ ++ MA+ +F ELK G+
Sbjct: 430 INYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGV 489
Query: 160 DPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
PDT YT MI + D+AM + M +GC P L LI L G+
Sbjct: 490 SPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGGK 543
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + YS +++ GK + + L E++ G+ P+ YT I V Q D+A +
Sbjct: 211 PSVRTYSVLMVSFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYQI 270
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
M+ SGC P +T T++I+ L +AG
Sbjct: 271 LGKMEDSGCKPDVVTHTVVIQVLCDAG 297
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 121 EVW-------YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY 173
E+W Y ++ Y+ ++ L + ++ A +F E+K++G+ P+ Y +I +
Sbjct: 339 EIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLISGF 398
Query: 174 LQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
L+ M D+A+E + M A G +P+ T + I +G+
Sbjct: 399 LKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQ 438
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 4/130 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L + R E A+ +FN ++K+ P+L Y+ +IL LGK + + A +++ EL
Sbjct: 989 LIDGLGKSERIEE---AVCLFNEMKKK-GIVPNLYTYNSLILHLGKAGKASEAAQMYEEL 1044
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
+G P+ Y +I Y G D A Y+ + L ++ NL N E
Sbjct: 1045 LIKGWKPNVFTYNALIRGYSVSGSTDNAYAAYDCVAVGVSLKTALISGLVDENLINIAEG 1104
Query: 215 ELVAAVRRDC 224
RR C
Sbjct: 1105 LFAEMKRRGC 1114
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ ++ ++D L + N + KP++ Y+ I +LG+ + A ++ +++ G
Sbjct: 220 MVSFGKKRDVDTVLWLLNEMEAR-GVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSG 278
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
PD +T +I V G + A + + MKAS P ++T+ L+ ++G+ + V
Sbjct: 279 CKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSV 337
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Query: 76 SSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMI 135
++ + +G+ I ++D L ++ R LD AL VF+ + KE P+ Y+ +I
Sbjct: 342 NAMVADGYNDNIVSYTA--VVDALCQVGR---LDEALAVFDEM-KEKGISPEQYSYNSLI 395
Query: 136 LMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCT 195
K A ELF + G P+ + I Y + G KA++ YE MK+ G
Sbjct: 396 SGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIV 455
Query: 196 PHKLTFTILIRNLENAG 212
P ++ +L +G
Sbjct: 456 PDVAAANAVLSSLARSG 472
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y+ Y+ +I L K+K++ A +L+ L EG P Y ++ L+ G + A
Sbjct: 839 YESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAE 898
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+ M GC P+ + IL+ AG E V +
Sbjct: 899 NLFNEMLEYGCKPNCTIYNILLNGHRIAGNTENVCQI 935
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD Y ++ G + E++ + +G + + YT ++ QVG +D+A+
Sbjct: 315 KPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALA 374
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
++ MK G +P + ++ LI
Sbjct: 375 VFDEMKEKGISPEQYSYNSLISGF 398
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L+ L R L +A +VF + K++ PD Y+ MI K + A F ++ + G
Sbjct: 465 LSSLARSGRLGMAKRVF-YELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETG 523
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
PD +I + G ++A + + +K P T+ L+ L G+
Sbjct: 524 CVPDVLALNSLIDTLYKGGKGNEAWKLFHQLKEMKIEPTNGTYNTLLSGLGREGK 578
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + E++ A+ + + E PDLS Y+ ++ L K ++ A +FC++KK L P
Sbjct: 608 LSKNGEVNCAIGML-YSMTEKGCTPDLSSYNTVMYGLIKEERFEEAFRMFCQMKKI-LAP 665
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETY-ETMKASGCTPHKLTFTILIRNLEN-AGEEELV 217
D ++ +++ G++ +A+ T E + + C K +F L+ + N AG E+ +
Sbjct: 666 DYATLCTILPSFVKNGLMKEALHTVKEYILKADCNTDKSSFHSLMEGILNKAGVEKSI 723
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
PD+ Y+ +I L ++ F +L + GL+PD +Y +I + I++A+
Sbjct: 945 NPDIKSYTVLIDTLCTAGRLNDGLSYFRQLLELGLEPDLIIYNLLIDGLGKSERIEEAVC 1004
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
+ MK G P+ T+ LI +L AG+
Sbjct: 1005 LFNEMKKKGIVPNLYTYNSLILHLGKAGK 1033
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ +I L K+ A A E++ + ++G+ P R Y+ ++ + + +D + M+
Sbjct: 181 YNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNEME 240
Query: 191 ASGCTPHKLTFTILIRNLENA 211
A G P+ ++TI IR L A
Sbjct: 241 ARGVKPNVYSYTICIRVLGQA 261
Score = 37.0 bits (84), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 134 MILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG 193
+I L K+K+ A +LF + K G+ T Y +I + +ID A + + MK G
Sbjct: 744 LIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLG 803
Query: 194 CTPHKLTFTILI 205
C P + T+ +++
Sbjct: 804 CGPDEFTYNLIL 815
>gi|413953500|gb|AFW86149.1| hypothetical protein ZEAMMB73_846563 [Zea mays]
Length = 1039
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD +Y +I + GK A + F E++K GL D + Y M V+L G D+A+E
Sbjct: 381 PDEVIYGILIRIYGKLGLYEEARQTFGEIEKAGLLNDEQTYVAMAQVHLNAGDCDRALEV 440
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAA 219
E+MK G P + +++ L+R + +E++VAA
Sbjct: 441 LESMKTRGVKPSRFSYSALLRC--HVAKEDVVAA 472
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Query: 73 AKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYS 132
++ S+ + + S + RL ++ L E R + A F +++ ++ Y+P + Y+
Sbjct: 121 SRPSADMRQAMASFVTRLTFREMCVVLREQRGWRQ---ARDFFAWMKLQLCYEPSVVAYT 177
Query: 133 DMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS 192
++ + G+ ++ +AEE F E+ + G +PD ++ Y + G + M Y ++
Sbjct: 178 VLLRLYGRVGKVKLAEETFLEMLQVGCEPDAVACGTLLCAYARWGRHEDMMLFYSAVRGR 237
Query: 193 GCTPHKLTFTILIRNLE 209
G P + +I +L+
Sbjct: 238 GLVPPISVYNYMISSLQ 254
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
++ MI + GK ++ A E+F ++ GL D ++YT M+ +Y + G +A ++ MK
Sbjct: 784 FNTMISVYGKGGKLDKAVEMFAAAQELGLPIDEKMYTNMLSLYGKAGRHQEASLMFKRMK 843
Query: 191 ASGCTPHKLTFTILIRNLENAG 212
G P K++F +I +G
Sbjct: 844 EDGIRPGKISFNSMINAYATSG 865
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 3/120 (2%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+ TE + E + A++ P +S +IL K ++ A ++ ++
Sbjct: 892 LIRAYTEAKLYTEAEEAIRTMTLSSSNT--TPSCPHFSHLILAFLKEGRVGEARRIYGQM 949
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
+ G+ PD M+ VY+ G++D + YET S P + E AG E
Sbjct: 950 MEVGVAPDLACCRAMMRVYVDRGLVDDGISLYETTCGS-LKPDSFVLSAAFHLYERAGRE 1008
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 2/128 (1%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ L R+ D A +++ + E+ KPD S + +I+ G+ KQ+ A+ELF +
Sbjct: 614 ISRLAREGSTDEARFIYDQL-TELGTKPDDSAVATLIVQYGQAKQLERAQELF-DSASAS 671
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
V M+ + + G + A + M G + +T +IL+ +L G+ + V
Sbjct: 672 FPDGALVCNAMVDAFCKCGRAEDAYHLFMEMADQGSYRNAVTASILVTHLTKHGKFQEVE 731
Query: 219 AVRRDCIQ 226
+ C +
Sbjct: 732 NIMHGCFR 739
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L +++ L+ A+ +F +R+ + P+ + YS +I ++ + A LF E+K +G
Sbjct: 285 IGSLVKEDLLEEAVDLFGEMRRR-RFVPEEATYSLLISASSRHGKGEQALRLFEEMKGQG 343
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
+ P ++ ++ + KA+ + M++S P ++ + ILIR
Sbjct: 344 IAPSNYTCASLLALHCKNEDYPKALALFSDMESSKVIPDEVIYGILIR 391
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 47/90 (52%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P +S+Y+ MI L K K ++ ++ + G P+ YT +IG ++ ++++A++
Sbjct: 241 PPISVYNYMISSLQKQKLHGKVIHVWKQMLEAGAPPNQFTYTVVIGSLVKEDLLEEAVDL 300
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ M+ P + T+++LI G+ E
Sbjct: 301 FGEMRRRRFVPEEATYSLLISASSRHGKGE 330
Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R + + AL++F ++ + P + ++ + KN+ A LF +++ + PD
Sbjct: 325 RHGKGEQALRLFEEMKGQ-GIAPSNYTCASLLALHCKNEDYPKALALFSDMESSKVIPDE 383
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+Y +I +Y ++G+ ++A +T+ ++ +G + T+ + + NAG+
Sbjct: 384 VIYGILIRIYGKLGLYEEARQTFGEIEKAGLLNDEQTYVAMAQVHLNAGD 433
>gi|297826989|ref|XP_002881377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327216|gb|EFH57636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 589
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+S Y+ +I + GK + EELF ELK+ PD +T IG Y + + K +E +
Sbjct: 471 DISTYNILINIYGKAGFLERIEELFVELKERNFKPDVVTWTSRIGAYSRKKLYVKCLEIF 530
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
E M SGC P T +L+ + + E V +V R
Sbjct: 531 EEMIDSGCAPDGGTAKVLLSACSSEDQVEQVTSVLR 566
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 61/134 (45%), Gaps = 24/134 (17%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
++R+ + A+ VF ++++ KP Y+ MI + GK + M+ +LFCE++ P
Sbjct: 249 MKRKGNTEQAIDVFQRMKRDRC-KPTTETYNLMINLYGKASKSYMSWKLFCEMRSHQCKP 307
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYET-----------------------MKASGCTPHK 198
+ YT ++ + + G+ +KA E +E M+ GC P +
Sbjct: 308 NICTYTALVNAFAREGLCEKAEEIFEQLQEDGHIDSRAGYPYGAAEIFSLMQHMGCEPDR 367
Query: 199 LTFTILIRNLENAG 212
++ I++ AG
Sbjct: 368 ASYNIMVDAYGRAG 381
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 52/115 (45%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
DL++ +LR + D + V ++ + ++PD+ ++ +I G+ + AE L+ +
Sbjct: 134 DLINVSVQLRLNKKWDSIILVCEWILRRSSFQPDVICFNLLIDAYGQKFRFKEAESLYVQ 193
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
L + P YT +I Y G+I+KA M+ +P + I L
Sbjct: 194 LLESRCVPTEDTYTLLIKAYCMAGLIEKAEAVLIEMQNHHVSPSVTVYNAYIEGL 248
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 129 SLYSDMILM--LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
++ S M+L+ + + + E + E+ + G++PDT V M+ +Y ++G K +
Sbjct: 401 TMKSHMLLLSAYSRARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKIL 460
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPER 233
M+ CT T+ ILI AG E + + +VE ER
Sbjct: 461 AEMENGPCTADISTYNILINIYGKAGFLERIEEL------FVELKER 501
>gi|356523854|ref|XP_003530549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial-like [Glycine max]
Length = 678
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 6/139 (4%)
Query: 77 SKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMIL 136
S LE G + I + ++D L +++R E AL+ F + E P+ +Y+ +I
Sbjct: 489 SLLENGLKPDIFTF--SSIVDGLCQIKRTEE---ALECFTEM-IEWGINPNAVIYNILIR 542
Query: 137 MLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP 196
L +A + +L ++KEG+ PDT Y +I ++ ++ ++KA + +++M SG P
Sbjct: 543 SLCTIGDVARSVKLLRRMQKEGISPDTYSYNALIQIFCRMNKVEKAKKLFDSMSRSGLNP 602
Query: 197 HKLTFTILIRNLENAGEEE 215
T++ I L +G E
Sbjct: 603 DNYTYSAFIEALSESGRLE 621
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 47/83 (56%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ +I + + ++ A++LF + + GL+PD Y+ I + G +++A +
Sbjct: 567 PDTYSYNALIQIFCRMNKVEKAKKLFDSMSRSGLNPDNYTYSAFIEALSESGRLEEAKKM 626
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ +M+A+GC+P ++I+ L
Sbjct: 627 FYSMEANGCSPDSYICNLIIKIL 649
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+L ++ +I K+ I A +L L + GL PD ++ ++ Q+ ++A+E
Sbjct: 462 PNLVTFNTLINGHCKDGAIDKARKLLESLLENGLKPDIFTFSSIVDGLCQIKRTEEALEC 521
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+ M G P+ + + ILIR+L G+
Sbjct: 522 FTEMIEWGINPNAVIYNILIRSLCTIGD 549
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%)
Query: 147 AEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
+ +FC++ GL P TR+Y +I ++ ID A ++ M A C + T+ LI
Sbjct: 163 SAHVFCQISFLGLSPTTRLYNALIDALVKSNSIDLAYLKFQQMAADNCVADRFTYNTLIH 222
Query: 207 NLENAGEEELVAAVRRDCIQYVEFPERF 234
+ G + + R FP F
Sbjct: 223 GVCKVGVVDEALRLVRQMKDKGHFPNVF 250
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
EL VF +RK+ K + Y +I +L KN+ + ++ +L +GL + Y
Sbjct: 374 ELRETCDVFEILRKQ-GVKAGIGAYLALIEVLYKNEWREEGDRVYGQLISDGLISNVFSY 432
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
+I + + ++D A E + M+ G P+ +TF LI
Sbjct: 433 NMIINCFCRAKLMDNASEAFRDMQVRGVVPNLVTFNTLIN 472
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P LY+ +I L K+ I +A F ++ + D Y +I +VG++D+A+
Sbjct: 177 PTTRLYNALIDALVKSNSIDLAYLKFQQMAADNCVADRFTYNTLIHGVCKVGVVDEALRL 236
Query: 186 YETMKASGCTPHKLTFTILI 205
MK G P+ T+T+LI
Sbjct: 237 VRQMKDKGHFPNVFTYTMLI 256
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Query: 85 SRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQI 144
S RL A L+D L + N +DLA F + + D Y+ +I + K +
Sbjct: 176 SPTTRLYNA-LIDALV---KSNSIDLAYLKFQQMAADNCVA-DRFTYNTLIHGVCKVGVV 230
Query: 145 AMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTIL 204
A L ++K +G P+ YT +I + +D+A +ETMK SG P++ T L
Sbjct: 231 DEALRLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFETMKDSGVYPNEATVRAL 290
Query: 205 IRNL 208
+ +
Sbjct: 291 VHGV 294
>gi|226499896|ref|NP_001150085.1| EMB2745 [Zea mays]
gi|195636584|gb|ACG37760.1| EMB2745 [Zea mays]
gi|414879767|tpg|DAA56898.1| TPA: EMB2745 [Zea mays]
Length = 410
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 1/107 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L R ++L A+++F +R+E +P + ++ +I GK ++A A F ++K G
Sbjct: 150 IAGLCRHSKLKDAVQLFEAMRRE-GIRPSIVTFNLLIDGYGKAGKMANALHFFNQMKAAG 208
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
L P Y E+I + +V I +A+ + MK G P K+T+TILI
Sbjct: 209 LPPSVVTYNELICGFCRVRDIARAVRAFLDMKERGLAPTKVTYTILI 255
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ +I L ++ ++ A +LF +++EG+ P + +I Y + G + A+ + MK
Sbjct: 146 YNILIAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQMK 205
Query: 191 ASGCTPHKLTFTILI 205
A+G P +T+ LI
Sbjct: 206 AAGLPPSVVTYNELI 220
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ ++NE+D A + + + K + D+ Y ++ L ++ A +LF + +G
Sbjct: 255 IAAFAKENEMDRAFMMLSEMEK-AGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDLKG 313
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ P++ +Y MI Y + G KA+ M+ +G P+ ++ + IR L N G+
Sbjct: 314 VKPNSVLYDMMIYGYGREGSSYKALRLIMEMRKNGLIPNVASYCLTIRLLCNEGK 368
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A +VF+ V + P+ Y+ +I M LF E++++G++P+ Y +I
Sbjct: 57 ARRVFD-VMPRLGVAPNEVTYTALINGYFVRGHREMGFALFAEMRRDGVEPNLYTYNCLI 115
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
G + + G A ++ M G + +++ ILI L
Sbjct: 116 GEWCRTGEFKSARLLFDEMPVKGVVHNVVSYNILIAGL 153
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL FN + K P + Y+++I + + IA A F ++K+ GL P YT +I
Sbjct: 197 ALHFFNQM-KAAGLPPSVVTYNELICGFCRVRDIARAVRAFLDMKERGLAPTKVTYTILI 255
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ + +D+A M+ +G ++ +L+ L
Sbjct: 256 AAFAKENEMDRAFMMLSEMEKAGLEVDVQSYGVLLHAL 293
>gi|224135699|ref|XP_002322139.1| predicted protein [Populus trichocarpa]
gi|222869135|gb|EEF06266.1| predicted protein [Populus trichocarpa]
Length = 866
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 67/138 (48%), Gaps = 5/138 (3%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
D E ++ + +L++F +++++W KP+ +Y+ MI +LG+ + ++F E
Sbjct: 109 DFALVFKEFAQRGDWQRSLRLFKHMQRQIWCKPNEHIYTIMISLLGREGLLEKCSDIFEE 168
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ G+ YT +I Y + G + ++E E MK +P LT+ +I + G
Sbjct: 169 MGAHGVSRSVFSYTALINSYGRNGKYEVSLELLERMKKERVSPSILTYNTVINSCARGGL 228
Query: 214 E-----ELVAAVRRDCIQ 226
+ L A +R + IQ
Sbjct: 229 DWEGLLGLFAEMRHEGIQ 246
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD++ Y+ ++ GK ++ EL E+ G P+ Y ++ Y ++G I+ A
Sbjct: 282 PDITTYTYLVDTFGKLNRLDKVSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGV 341
Query: 186 YETMKASGCTPHKLTFTILI 205
+ M+ +GC P+ T++IL+
Sbjct: 342 FRLMQEAGCVPNAETYSILL 361
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y +I GK A+++ + ++G+ P ++ YT +I Y Q M ++A+
Sbjct: 421 EPNMETYEGLIFACGKGGLHDDAKKILLHMSEKGMIPSSKAYTGVIEAYGQAAMYEEALV 480
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
T TM G P T+ LI G
Sbjct: 481 TLNTMNEMGSKPTIETYNTLIYMFARGG 508
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 43/75 (57%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
++ +I + Q A + + E++K L PD R ++ VY G++D+++E ++ +K
Sbjct: 532 FNGVIEGFRQGGQFEEAIKAYVEMEKSRLVPDERTLEAVLSVYCIAGLVDESVEQFQEIK 591
Query: 191 ASGCTPHKLTFTILI 205
ASG P+ + + +++
Sbjct: 592 ASGILPNVMCYCMML 606
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R ++ A VF + +E P+ YS ++ + GK+ + ELF E+K +PD
Sbjct: 331 RIGNIEDATGVFRLM-QEAGCVPNAETYSILLGLYGKHGRYDEVRELFLEMKVSNTEPDA 389
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y +I V+ + G + + + M P+ T+ LI
Sbjct: 390 ATYNTLIDVFGEGGYFKEVVTLFHDMAEENVEPNMETYEGLI 431
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 6/125 (4%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ Y+ ++ AE +F + + G+ PD YT ++ + ++ +DK E
Sbjct: 246 QPDIVTYNTLLCACSNRGLGDEAEMVFRTMNEGGVVPDITTYTYLVDTFGKLNRLDKVSE 305
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR-----DCIQYVEFPERFLEEVY 239
+ M ++G P ++ +L+ G E V R C+ E L +Y
Sbjct: 306 LLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPNAE-TYSILLGLY 364
Query: 240 QKHRK 244
KH +
Sbjct: 365 GKHGR 369
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
LF E++ EG+ PD Y ++ G+ D+A + TM G P T+T L+
Sbjct: 236 LFAEMRHEGIQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNEGGVVPDITTYTYLV 291
>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
truncatula]
gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
truncatula]
Length = 603
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 79 LEEGFQSRICRLLKADLLDT---LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMI 135
LE+GFQ+ LK D ++E +Q + AL +FN + K + +PD+ Y+ +I
Sbjct: 439 LEDGFQNG----LKPDKFTYNILMSEHCKQENIRQALALFNKMLK-IGIQPDIHSYTTLI 493
Query: 136 LMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCT 195
+ + ++ +E F E + G+ P + YT MI Y + G + AM+ + + GC
Sbjct: 494 AVFCRENRMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCA 553
Query: 196 PHKLTFTILIRNL 208
P +T+ +I L
Sbjct: 554 PDSITYGAIISGL 566
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 63/129 (48%), Gaps = 2/129 (1%)
Query: 111 ALKVF-NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
A ++F VR E +KP++ Y+ MI + ++ AE L +K++GL P+T YT +
Sbjct: 329 AFRLFLKLVRSEN-HKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTTL 387
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVE 229
I + + G ++A + M + G +P+ T+ ++ L G + + D Q
Sbjct: 388 IDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGL 447
Query: 230 FPERFLEEV 238
P++F +
Sbjct: 448 KPDKFTYNI 456
>gi|242039157|ref|XP_002466973.1| hypothetical protein SORBIDRAFT_01g017690 [Sorghum bicolor]
gi|241920827|gb|EER93971.1| hypothetical protein SORBIDRAFT_01g017690 [Sorghum bicolor]
Length = 504
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL + N++ +V P++ ++++I LG+ + + F E+ K+G DPD YT MI
Sbjct: 338 ALNLLNYM-SDVGCVPNVLHFTNLIDGLGRAGNLEACKYFFDEMIKKGCDPDVVCYTVMI 396
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
Y+ G ++A ++ M G P+ T+ +IR L GE + A+ +D
Sbjct: 397 SSYVAAGEFEEAQRFFDDMLLRGQLPNVYTYNSMIRGLCTVGEFDKAFAMLKD 449
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 124 YKPDLSLYSDMI---LMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
Y PD+ Y+ ++ MLGK Q L E+ ++GL PD Y ++ V +G D
Sbjct: 280 YSPDVLTYNVVMRAKYMLGKLDQF---HRLLDEMGRDGLTPDLHTYNLLLHV---LGKGD 333
Query: 181 K---AMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
K A+ M GC P+ L FT LI L AG E
Sbjct: 334 KPLAALNLLNYMSDVGCVPNVLHFTNLIDGLGRAGNLE 371
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL Y+ ++ +LGK + A L + G P+ +T +I + G ++
Sbjct: 317 PDLHTYNLLLHVLGKGDKPLAALNLLNYMSDVGCVPNVLHFTNLIDGLGRAGNLEACKYF 376
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ M GC P + +T++I + AGE E
Sbjct: 377 FDEMIKKGCDPDVVCYTVMISSYVAAGEFE 406
>gi|224127136|ref|XP_002329409.1| predicted protein [Populus trichocarpa]
gi|222870459|gb|EEF07590.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ LD A++ F R + LYS +I LGK ++ AE+LF E+ K+G PD+
Sbjct: 354 KSGRLDEAMEYLEFCRVN-GVAVNAMLYSSLIDGLGKAGRVHEAEKLFEEMVKKGCPPDS 412
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL--ENAGEEEL 216
Y +I + G D+A+ ++ M+ GC T+TI+I L E+ EE L
Sbjct: 413 YCYNALIDALAKCGKTDEALAFFKRMEDEGCDQTVYTYTIMINGLFREHKNEEAL 467
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%)
Query: 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
L + Q DLALK F + K+ Y +L Y I +L N + + +FC+ +
Sbjct: 67 VLKSMELQKRPDLALKFFTWAGKQKKYTHNLQCYVSSIDVLAINGDLDNVKSVFCKFRGM 126
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
G + +I + +GM+++ + + MK +G P T+ L+ L N+
Sbjct: 127 GFLMNVSAANSLIKSFGSLGMVEELLWVWRGMKENGVEPSLFTYNFLLNGLVNS 180
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
K ++++Y+ +I K + A LF +KKEGL+PD Y ++ + G +D+AME
Sbjct: 304 KVNVAIYTALIDSNAKCGNMGEAMLLFERMKKEGLEPDVVTYGVVVNCMCKSGRLDEAME 363
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
E + +G + + ++ LI L AG
Sbjct: 364 YLEFCRVNGVAVNAMLYSSLIDGLGKAG 391
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE +P L Y+ ++ L + I AE + ++ + PD Y MI Y QVG
Sbjct: 159 KENGVEPSLFTYNFLLNGLVNSVFIESAERVLEVMENGKIGPDVVTYNTMIKGYCQVGKT 218
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLE 236
KA E + M+ P K+T+ LI+ G+ +L ++ Y E E LE
Sbjct: 219 QKAFEKFRDMELRNVAPDKITYMTLIQACYAEGDFDLCLSL------YHEMDENGLE 269
>gi|449460864|ref|XP_004148164.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g62370-like [Cucumis sativus]
Length = 693
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 96 LDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELK 155
L + E RQ + A + +R +V KP +++Y +I L + K+I AE +F +
Sbjct: 541 LIIVNEYCRQGNVTAAYHILRKMR-QVGLKPSVAIYDSIIRCLSREKRICEAEVVFKMML 599
Query: 156 KEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ G+DPD + Y MI Y + G I +A E +E M + P +T LIR L
Sbjct: 600 EAGMDPDKKFYLTMIKGYSKNGRILEACELFEQMVENSIPPSSHIYTALIRGL 652
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 45/80 (56%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD ++Y+ +I +++++ MA + + K G PDT +I ++++G+++K
Sbjct: 255 PDKTMYTSLIHGYCRDRKMKMAMQALFRMVKIGCKPDTFTLNSLIHGFVKLGLVEKGWLV 314
Query: 186 YETMKASGCTPHKLTFTILI 205
Y+ M+ G P +TF I+I
Sbjct: 315 YKLMEDWGIQPDVVTFHIMI 334
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L Q + AL++F+ ++ Y P L L+ + L K+ + AE L E++ L P
Sbjct: 196 LCNQGFMGEALELFDIMQSTNGYPPTLHLFKTLFYGLCKSGWLVEAELLIREMEFRSLYP 255
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
D +YT +I Y + + AM+ M GC P T LI G E
Sbjct: 256 DKTMYTSLIHGYCRDRKMKMAMQALFRMVKIGCKPDTFTLNSLIHGFVKLGLVE 309
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E PD Y MI KN +I A ELF ++ + + P + +YT +I M D
Sbjct: 600 EAGMDPDKKFYLTMIKGYSKNGRILEACELFEQMVENSIPPSSHIYTALIRGLGMKNMTD 659
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
K M +G P+ + ++ L+ + GE
Sbjct: 660 KGCLYLGKMSRNGFLPNVVLYSTLMNHYLRVGE 692
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
G+ PD + MIG Y Q G +D A+ +M +S +P +T+L L G E V
Sbjct: 322 GIQPDVVTFHIMIGKYCQEGKVDSALMILNSMVSSNLSPSVHCYTVLSSALYRNGRLEEV 381
Query: 218 AAVRRDCIQYVEFPERF----LEEVYQKHRKTQVDL 249
+ + + P+ L ++Y K + Q+ L
Sbjct: 382 DGLLKGMLDNGIIPDHVLFLTLMKMYPKGHELQLAL 417
>gi|255660934|gb|ACU25636.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
Length = 484
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K+I AE+ F E+K ++P YT +I Y+ V +D A+
Sbjct: 183 PDVITYNTMINGYYRVKKIEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALTL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L NA
Sbjct: 243 LEEMKGFGIKPNAITYSTLLPGLCNA 268
>gi|302755642|ref|XP_002961245.1| hypothetical protein SELMODRAFT_70140 [Selaginella moellendorffii]
gi|300172184|gb|EFJ38784.1| hypothetical protein SELMODRAFT_70140 [Selaginella moellendorffii]
Length = 489
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L+R + +AL+ F + + ++K D YS MI +LG +LF E++++GL P
Sbjct: 7 LKRVRDWRVALEFFTWAKSVPFFKHDAMNYSMMIRVLGTCGNYTQGRKLFDEMREKGLKP 66
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
D MI Y +D AM+ + G P T+ +LI L AG V+ VR
Sbjct: 67 DLVTVNNMIKCYGSANRMDDAMDLFREFPDFGFEPDVCTYALLIDLLGKAGR---VSEVR 123
Query: 222 R 222
+
Sbjct: 124 K 124
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Query: 91 LKADLLDTLTELR---RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMA 147
LK DL+ ++ N +D A+ +F + ++PD+ Y+ +I +LGK +++
Sbjct: 64 LKPDLVTVNNMIKCYGSANRMDDAMDLFREF-PDFGFEPDVCTYALLIDLLGKAGRVSEV 122
Query: 148 EELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+LF EL+ L PD V+ MI + + + A E + MK G P +T+ I++
Sbjct: 123 RKLFLELQSRKLKPDEYVFNSMIANFSKWKDLGLADEALDYMKVCGIRPSTVTYAIVL 180
Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Query: 108 LDLALKVFNFVRKEVWY--------KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGL 159
L++ K NF+ E Y PDL +Y++ IL G + AE +++K GL
Sbjct: 180 LNMYAKSLNFMLAEKIYCEYLNSNLPPDLYVYNNAILFFGLAGRCREAEWAVEDIEKAGL 239
Query: 160 DPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAA 219
PD Y +I + + G A + ++ ++ G TP LI A + E VA
Sbjct: 240 VPDKFSYCTIISAWARQGCAPDAKKWFDKARSRGITPSPEMCNALIDAYIKALDLEPVAG 299
Query: 220 V 220
+
Sbjct: 300 I 300
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ + +L LA + +++ K +P Y+ ++ M K+ +AE+++CE
Sbjct: 145 IANFSKWKDLGLADEALDYM-KVCGIRPSTVTYAIVLNMYAKSLNFMLAEKIYCEYLNSN 203
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
L PD VY I + G +A E ++ +G P K ++ +I G
Sbjct: 204 LPPDLYVYNNAILFFGLAGRCREAEWAVEDIEKAGLVPDKFSYCTIISAWARQG 257
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPDL ++MI G ++ A +LF E G +PD Y +I + + G + + +
Sbjct: 65 KPDLVTVNNMIKCYGSANRMDDAMDLFREFPDFGFEPDVCTYALLIDLLGKAGRVSEVRK 124
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
+ +++ P + F +I N
Sbjct: 125 LFLELQSRKLKPDEYVFNSMIANF 148
>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 634
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 105 QNELDLALKVFNF-VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ LD A ++F F V K+ + PD+ Y+ +I K+K++ ELF E+ GL DT
Sbjct: 378 HDRLDKAKQMFEFMVSKDCF--PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDT 435
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
YT +I G D A + ++ M + G P +T++IL+ L N G+ E
Sbjct: 436 VTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE 487
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L +L+ AL+VF++++K K D+ +Y+ MI + K ++ +LFC L +G
Sbjct: 477 LDGLCNNGKLEKALEVFDYMQKS-EIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKG 535
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI----RNLENAGEE 214
+ P+ Y MI ++ +A + MK G P+ T+ LI R+ + A
Sbjct: 536 VKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASA 595
Query: 215 ELVAAVR 221
EL+ +R
Sbjct: 596 ELIREMR 602
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
P+L ++ +I K + AE+L+ ++ K +DPD Y ++ + +DKA +
Sbjct: 327 NPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQ 386
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
+E M + C P +T+ LI+
Sbjct: 387 MFEFMVSKDCFPDVVTYNTLIKGF 410
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 7/139 (5%)
Query: 76 SSKLEEG---FQSRICRLLKADLLDTLT---ELRRQNELDLALKVFNFVRKEVWYKPDLS 129
S ++E+G F+ R L D + T L + D A KVF + + PD+
Sbjct: 413 SKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSD-GVPPDIM 471
Query: 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM 189
YS ++ L N ++ A E+F ++K + D +YT MI + G +D + + ++
Sbjct: 472 TYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSL 531
Query: 190 KASGCTPHKLTFTILIRNL 208
G P+ +T+ +I L
Sbjct: 532 SLKGVKPNVVTYNTMISGL 550
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R++++ LAL + + K + Y+P + S ++ K+I+ A L ++ + G PDT
Sbjct: 132 RRSQISLALALLGKMMK-LGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDT 190
Query: 164 RVYTEMI-GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
+T +I G++L +A+ + M GC P+ +T+ +++ L G+ +L
Sbjct: 191 ITFTTLIHGLFLH-NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDL 243
>gi|255660924|gb|ACU25631.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
Length = 484
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K++ AE+ F E+K + ++P YT +I Y+ V +D A+
Sbjct: 183 PDVITYNTMINGYYRVKKMEEAEKYFVEMKGKNIEPTVVTYTTLIKGYVSVDQVDDALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L NA
Sbjct: 243 VEEMKGYGIKPNAITYSTLLPGLCNA 268
>gi|255660872|gb|ACU25605.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
Length = 484
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K++ AE+ F E+K ++P YT +I Y+ V +D A+
Sbjct: 183 PDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
Z MK G P+ +T++ L+ L NA
Sbjct: 243 VZEMKGXGIKPNAITYSTLLPGLCNA 268
Score = 36.6 bits (83), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 38/75 (50%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ + ++ + + MA+ F ++ EG++P + MI + G ++ A +E MK
Sbjct: 118 YNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177
Query: 191 ASGCTPHKLTFTILI 205
+ +P +T+ +I
Sbjct: 178 SREISPDVVTYNTMI 192
>gi|242046162|ref|XP_002460952.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
gi|241924329|gb|EER97473.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
Length = 796
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 114 VFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY 173
VF+ +R Y PD+ ++ ++ + G+N + +F E+KK G P+ Y +I Y
Sbjct: 418 VFDDLR-SAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSY 476
Query: 174 LQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVR-RDC 224
+ G+ D+AME Y+ M +G P T+ ++ L G E+L A + RDC
Sbjct: 477 SRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEMEDRDC 532
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 14/152 (9%)
Query: 55 RSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKV 114
R R L EA Q MK A GF+ ++ LLD + RR E LK
Sbjct: 267 RRRGLYREAAQMFDEMKAA--------GFEPD--KVTFNSLLDVYGKARRHEEAIGVLKK 316
Query: 115 FNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYL 174
+ P + Y+ +I K+ + A EL E++ G+ PD YT +I
Sbjct: 317 M----ENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLD 372
Query: 175 QVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
++G ID A+ TY M +GC+P+ T+ LI+
Sbjct: 373 RIGKIDAALATYSEMVRNGCSPNLCTYNALIK 404
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD Y+ +I G+ Q+ A LF E+K G+ PD Y I Y+ M ++A++
Sbjct: 673 RPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANLMFEEAID 732
Query: 185 TYETMKASGCTPHKLTFTILI 205
+ A GC P++ T+ ++
Sbjct: 733 LVRYLVAQGCKPNERTYNSIL 753
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K ++PD ++ ++ + GK ++ A + +++ G P Y +I Y++ G++
Sbjct: 283 KAAGFEPDKVTFNSLLDVYGKARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLL 342
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAA-----VRRDC 224
++A+E + M+ G P +T+T LI L+ G+ + A VR C
Sbjct: 343 EEALELKQEMEFRGMKPDVVTYTTLISGLDRIGKIDAALATYSEMVRNGC 392
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 5/173 (2%)
Query: 74 KSSSKLEEGFQS---RICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSL 130
S S+ E+ FQ R C L ++L+ + + +N++ ++ + KE +
Sbjct: 585 NSLSETEKAFQELRRRRCSL-DINVLNAMVSIYGKNKMVKKVEEVLTLMKENSINHSAAT 643
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ ++ M + E + E+K G+ PD Y +I Y + G + +A + MK
Sbjct: 644 YNSLMHMYSRLGDCEKCEAILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMK 703
Query: 191 ASGCTPHKLTFTILIRN-LENAGEEELVAAVRRDCIQYVEFPERFLEEVYQKH 242
SG P +T+ I I++ + N EE + VR Q + ER + + +
Sbjct: 704 CSGVKPDIVTYNIFIKSYVANLMFEEAIDLVRYLVAQGCKPNERTYNSILEGY 756
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 6/128 (4%)
Query: 89 RLLKADLLDTLT---ELRRQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQI 144
R +K D++ T L R ++D AL ++ VR P+L Y+ +I M G +
Sbjct: 355 RGMKPDVVTYTTLISGLDRIGKIDAALATYSEMVRNGC--SPNLCTYNALIKMHGVRGKF 412
Query: 145 AMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTIL 204
+F +L+ G PD + ++ V+ Q G+ + ++ MK +G P + T+ L
Sbjct: 413 TEMMIVFDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSL 472
Query: 205 IRNLENAG 212
I + G
Sbjct: 473 ISSYSRCG 480
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ R D A++++ + + Y PD+S Y+ ++ L + + AE+LF E++
Sbjct: 473 ISSYSRCGLFDQAMEIYKRMIEAGIY-PDISTYNAVLSALARGGRWVQAEKLFAEMEDRD 531
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK--LTFTILIRNLENAGEE 214
PD Y+ ++ Y +DK E + A PH + +L+ N N+ E
Sbjct: 532 CKPDELSYSSLLHAYANAKKLDKMKALSEDIYAQRIEPHNWLVKTLVLVNNKVNSLSE 589
>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
Length = 676
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+TE +Q + AL +FN + + + PD+ Y+ +I M + +Q+ +++LF + G
Sbjct: 434 ITEHCKQGHITYALDLFNQMAENSCH-PDIDTYTTIIAMYCQQRQMEQSQQLFDKCLSIG 492
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
L P + YT MI Y +VG A++ +E M GC P +T+ LI L
Sbjct: 493 LVPTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPDPITYGALISGL 542
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 6/145 (4%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A ++F + K YKP++ Y+ MI K ++A AE L + ++GL P+T YT +I
Sbjct: 305 AFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLI 364
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD------C 224
+ + G D+A E MK G P+ T+ +I G+ + V R C
Sbjct: 365 DGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLC 424
Query: 225 IQYVEFPERFLEEVYQKHRKTQVDL 249
V + E Q H +DL
Sbjct: 425 PDKVTYTMLITEHCKQGHITYALDL 449
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R D A ++ N ++ E + P++ Y+ +I K +I A ++ +GL PD
Sbjct: 369 RGGSFDRAFELMNKMKLE-GFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDK 427
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
YT +I + + G I A++ + M + C P T+T +I
Sbjct: 428 VTYTMLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTII 469
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 48/107 (44%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ +I K I A +LF ++ + PD YT +I +Y Q ++++ +
Sbjct: 425 PDKVTYTMLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQQRQMEQSQQL 484
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
++ + G P K T+T +I G+ V +Q+ P+
Sbjct: 485 FDKCLSIGLVPTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPD 531
>gi|346703736|emb|CBX24404.1| hypothetical_protein [Oryza glaberrima]
Length = 1765
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ P L Y +I LGK + LF E++K G P+ ++Y +I + +AM
Sbjct: 1213 FLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCKCRSATQAM 1272
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAG-----EEELVAAVRRD 223
+ M ASGC P +TF LI L + G E L A+RR+
Sbjct: 1273 VILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRE 1317
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 104 RQNELDLALK-VFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
+Q L+ AL+ + + ++++ KP++ YS +I K AE LF ++ E L P+
Sbjct: 1509 KQGNLNGALRWLCDMIKRKC--KPNVVTYSSLINGYCKTGDTDFAEGLFANMQAEALSPN 1566
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
YT +IG + + +A +ETM + C+P+ +T L+ L
Sbjct: 1567 VVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGL 1612
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD +Y+ +I +++ + A ++F ++ +G+ PD MI Y Q GM+ +A+
Sbjct: 1424 QPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGICPDIVSCNAMIKGYCQFGMMSEAIL 1483
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDC 224
M+ GC P + T+T +I G L A+R C
Sbjct: 1484 CMSNMRKVGCIPDEFTYTTVISGYAKQG--NLNGALRWLC 1521
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ +I K + A C++ K P+ Y+ +I Y + G D A
Sbjct: 1495 PDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDFAEGL 1554
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ M+A +P+ +T+TILI +L
Sbjct: 1555 FANMQAEALSPNVVTYTILIGSL 1577
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 45/107 (42%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ ++ +I L + AE E + L+P+ YT +I + G + A +
Sbjct: 1285 PDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDL 1344
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
M G TP +TF LI L AG+ VR + FP+
Sbjct: 1345 LVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPD 1391
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 8/129 (6%)
Query: 90 LLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEE 149
+ A L+D R L A K+F F+ + PD+ + MI G + M+E
Sbjct: 1428 FVYATLIDGFI---RSENLGDARKIFEFMEHK-GICPDIVSCNAMIK--GYCQFGMMSEA 1481
Query: 150 LFC--ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN 207
+ C ++K G PD YT +I Y + G ++ A+ M C P+ +T++ LI
Sbjct: 1482 ILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLING 1541
Query: 208 LENAGEEEL 216
G+ +
Sbjct: 1542 YCKTGDTDF 1550
>gi|302809414|ref|XP_002986400.1| hypothetical protein SELMODRAFT_123901 [Selaginella moellendorffii]
gi|300145936|gb|EFJ12609.1| hypothetical protein SELMODRAFT_123901 [Selaginella moellendorffii]
Length = 318
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L + +EL +LKVF+ + PD+ Y ++ L K + MA F +KK G
Sbjct: 16 IKNLVKDSELTKSLKVFHMFETDQL-SPDVGTYHYIVSGLCKANKTKMAAMYFEGMKKLG 74
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
L PDT Y+ MI Y + G +++A++ +E MK F L+R + + + LV
Sbjct: 75 LLPDTMTYSTMIDCYGRAGKVNRALQLFEEMKRKNVRLDTRVFNSLLRAVGTSYKPSLVY 134
Query: 219 AVRRDCIQYVEFPE 232
+ R+ + P+
Sbjct: 135 NIFREMQYFGHVPD 148
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ +IL LG + A L ++G++ + + + ++ + +I+ A
Sbjct: 181 KPDIYTYTAIILCLGNAGRTKSAYNFMQGLLRKGVEVNVKTWNALLRGLTKEDVIEVAFS 240
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
Y MKA G P T+++L+ N + + V ++RD
Sbjct: 241 VYNDMKARGFKPDNTTYSLLLENSIALRDAKKVYRIQRD 279
>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
Length = 855
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 54/97 (55%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+ Y+ +I L K +I A++L ++ K G++PD + Y+ +I + M+D A +
Sbjct: 747 PECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDV 806
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
++ M GC P+++T+ +L R AG + AV++
Sbjct: 807 FQEMMKRGCAPNEVTYKVLRRGFRAAGRALDLEAVKQ 843
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ Y+ +I L +K+I A ELF +LK G P+ YT +I L+ G I+ ++ +
Sbjct: 362 DVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNF 421
Query: 187 ETMKASGCTPHKLTFTILIRNLENA 211
E M S C P + T+T++I L A
Sbjct: 422 EDMSGSSCVPTRTTYTVVIDGLCKA 446
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 13/166 (7%)
Query: 75 SSSKLEEGFQ------SRICR---LLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYK 125
S + EE +Q +R C +L L+D L R E A VF+ + E
Sbjct: 550 SKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPE---ARHVFDSM-IEKGCA 605
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y +I K + A E+ + K G+ PD Y ++ Y+++ +D+A
Sbjct: 606 PDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGV 665
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFP 231
Y+ M ASG P+ +TF +L+ L G+ + ++ ++ ++ E P
Sbjct: 666 YDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVP 711
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++PD+ LY+ +I K + ++ E+ G PD Y +I ++G +D+A
Sbjct: 120 FRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAY 179
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
E +E M+ SGC +TF LI L N G+ + + R+ I+
Sbjct: 180 ELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIE 222
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E +P L +++ ++ + A ++ E+ G PD +YT +I + G +
Sbjct: 530 RERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRV 589
Query: 180 DKAMETYETMKASGCTPHKLTFTILIR------NLENAGEE-ELVA--AVRRDCIQY 227
+A +++M GC P LT+ +I+ N+E AGE EL+A V DC Y
Sbjct: 590 PEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAY 646
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 7/114 (6%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
R N LD AL++F + KP+ + Y+ +I L +++ A+ F E LD
Sbjct: 309 FSRANRLDDALELFKLL-SSYGCKPNAATYTTIIQGLYDAQRMEEAKAFF----DEALD- 362
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
YT +I ID+A E +E +K +GC+P+ + +T +I L AG E
Sbjct: 363 -VISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIE 415
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ + ++ L K ++I A ELF E+ G +P Y +I + +D+A +
Sbjct: 18 PDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEAYKF 77
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEEL 216
+ +M +GC P + FT LI AG+ ++
Sbjct: 78 FNSMIDNGCEPDVIAFTTLIHGFCKAGQPQV 108
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P Y ++ K I A+E+ ++++ G +P ++T ++ YL G ++A +
Sbjct: 500 EPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQ 559
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
M A GC P + +T LI L + G
Sbjct: 560 VLTEMTARGCAPDVILYTSLIDLLFSTG 587
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 30/51 (58%)
Query: 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
PD + Y ++ + + +D A+E ++ + + GC P+ T+T +I+ L +A
Sbjct: 297 PDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDA 347
>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
Length = 614
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ YS +I L ++ ++ A L +K G PD +Y+ +I + G +D+A +
Sbjct: 363 KPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFD 422
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
YE M GC +T++ LI L AG
Sbjct: 423 LYEVMAGDGCDADVVTYSTLIDGLCKAG 450
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R N LD A ++ +V+ PD+ LYS +I L K ++ A +L+ + +G D
Sbjct: 376 LCRSNRLDEACRLLLYVKSR-GCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDA 434
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
D Y+ +I + G +D+A M G P +T+ LI+ L
Sbjct: 435 DVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGL 481
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 76 SSKLEEG------FQSRICR---LLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKP 126
S++L+E +SR C +L + L+D L + ++D A ++ + +
Sbjct: 379 SNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLC---KAGKVDEAFDLYEVMAGD-GCDA 434
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ YS +I L K ++ A L + + G P T Y +I + +D+A+E
Sbjct: 435 DVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELV 494
Query: 187 ETMKASGCTPHKLTFTILIRNL 208
E M+ S C P +T+ ILI +
Sbjct: 495 EEMERSNCAPSAVTYNILIHGM 516
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L + +R + AL+ F ++ D +Y+ ++ L K K++ A + E+
Sbjct: 50 LIDGLCKAKRSID---ALRCFRAMQGS-GIVADTVIYTALLSGLWKEKRLDQALAILHEM 105
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
+ G +P+ Y +I + D+A E +E MK+ C+P +T+ L+ L G+
Sbjct: 106 RDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKL 165
Query: 215 E 215
E
Sbjct: 166 E 166
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 45/99 (45%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
P++ YS +I L K +++ A EL +K G PD YT ++ + + A E
Sbjct: 188 SPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWE 247
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
M +GC P+ +T+ L+ L A A+ RD
Sbjct: 248 VLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRD 286
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R E+D A + F+ +R + P++ L S +I L K K+ A F ++ G+ DT
Sbjct: 21 RGGEIDQAQRCFDEMRSKNLV-PNVFLCSILIDGLCKAKRSIDALRCFRAMQGSGIVADT 79
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+YT ++ + +D+A+ M+ GC P+ +T+ LI L E +
Sbjct: 80 VIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPD 131
Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 47/108 (43%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
PD+ Y+ ++ L K ++A A E+ E+ G P+ Y ++ + + A+
Sbjct: 223 SPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALA 282
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
M GCTP+ +T+ LI L G + A+ D I P+
Sbjct: 283 LMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPD 330
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL +Y+ +I L K Q+ + L G+ PD Y+ +I + +D+A
Sbjct: 329 PDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRL 388
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+K+ GC P + ++ LI L AG+
Sbjct: 389 LLYVKSRGCPPDVILYSTLIDGLCKAGK 416
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+L Y+ ++ L + ++++ A L ++ G P+ Y +I +VG + A
Sbjct: 259 PNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAM 318
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE-EELVAAVRR 222
M G TP + + +LI L A + +E +A +RR
Sbjct: 319 LADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRR 356
>gi|255660926|gb|ACU25632.1| pentatricopeptide repeat-containing protein [Neosparton
ephedroides]
Length = 484
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K++ AE+ F E+K + ++P YT +I Y+ V +D A+
Sbjct: 183 PDVITYNTMINGYCRVKKMEEAEKYFVEMKGKNIEPTVVTYTTLIKGYVSVDQVDDALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L NA
Sbjct: 243 VEEMKGYGIKPNAITYSTLLPGLCNA 268
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 37/75 (49%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y + ++ + + MA+ F ++ EG++P + MI + G ++ A +E MK
Sbjct: 118 YDALFKVIMRRGRFMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177
Query: 191 ASGCTPHKLTFTILI 205
+ +P +T+ +I
Sbjct: 178 SREISPDVITYNTMI 192
>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
thaliana]
Length = 1184
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R ELD K+ ++++ KP+ +Y +I +L + ++A AEE F E+ ++G+ PDT
Sbjct: 736 RFGELDKVWKLIEVMKRKG-LKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDT 794
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
VYT +I + + G I A + + M + TP LT+T +I G+
Sbjct: 795 VVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGD 844
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I + + A +LF E+ +GL+PD+ +TE+I Y + G + A
Sbjct: 827 PDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRV 886
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+ M +GC+P+ +T+T LI L G+
Sbjct: 887 HNHMIQAGCSPNVVTYTTLIDGLCKEGD 914
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 61/145 (42%), Gaps = 19/145 (13%)
Query: 82 GFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141
G RIC+L +A+ + +E+ RQ L PD +Y+ +I K
Sbjct: 767 GLLCRICKLAEAE--EAFSEMIRQGIL-----------------PDTVVYTTLIDGFCKR 807
Query: 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF 201
I A + F E+ + PD YT +I + Q+G + +A + + M G P +TF
Sbjct: 808 GDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTF 867
Query: 202 TILIRNLENAGEEELVAAVRRDCIQ 226
T LI AG + V IQ
Sbjct: 868 TELINGYCKAGHMKDAFRVHNHMIQ 892
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 102 LRRQNELDLALKVFNFVRKEVW---YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L ++ +LD A N + E+W +P++ Y+ ++ L K+ I A +L E + G
Sbjct: 909 LCKEGDLDSA----NELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAG 964
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
L+ DT YT ++ Y + G +DKA E + M G P +TF +L+
Sbjct: 965 LNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGF 1014
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 6/135 (4%)
Query: 83 FQSRICRLLKADLLDTLTELR----RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILML 138
F C+ L+ D + T TEL + + A +V N + + P++ Y+ +I L
Sbjct: 852 FHEMFCKGLEPDSV-TFTELINGYCKAGHMKDAFRVHNHM-IQAGCSPNVVTYTTLIDGL 909
Query: 139 GKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK 198
K + A EL E+ K GL P+ Y ++ + G I++A++ +A+G
Sbjct: 910 CKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADT 969
Query: 199 LTFTILIRNLENAGE 213
+T+T L+ +GE
Sbjct: 970 VTYTTLMDAYCKSGE 984
>gi|356561401|ref|XP_003548970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 447
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 98 TLTELRRQNELDLALKVFNFVRKEVW-YKPDLSLYSDMILMLGKNKQIAMAEELFCELKK 156
L L + LD A +F ++K W +P+ Y+ +I L K ++ A++LF L
Sbjct: 316 VLDGLCKSQNLDKATALFMKMKK--WGIQPNKYTYTALIDGLCKGGRLKNAQKLFQHLLV 373
Query: 157 EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL----ENAG 212
+G D R Y MI + GM DKA+ M+ +GC P+ +TF I+IR+L EN
Sbjct: 374 KGCCIDVRTYNVMISGLCKEGMFDKALAMKSKMEDNGCIPNAVTFDIIIRSLFEKDENDK 433
Query: 213 EEELV 217
E+L+
Sbjct: 434 AEKLL 438
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ +YS +I L K+K + A + F E+ G+ P+ Y+ +I + G + A
Sbjct: 202 RPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFS 261
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
M P+ T+ ILI L G+
Sbjct: 262 LLNEMILKNINPNVYTYNILIDALCKEGK 290
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
P++ Y+ +I L K ++ A++L E+ +G D Y ++ + +DKA
Sbjct: 272 NPNVYTYNILIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATA 331
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ MK G P+K T+T LI L G
Sbjct: 332 LFMKMKKWGIQPNKYTYTALIDGLCKGG 359
>gi|302772122|ref|XP_002969479.1| hypothetical protein SELMODRAFT_61155 [Selaginella moellendorffii]
gi|300162955|gb|EFJ29567.1| hypothetical protein SELMODRAFT_61155 [Selaginella moellendorffii]
Length = 489
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L+R + +AL+ F + + ++K D YS MI +LG +LF E++++GL P
Sbjct: 7 LKRVRDWRVALEFFTWAKSVPFFKHDAMNYSMMIRVLGTCGNYTQGRKLFDEMREKGLKP 66
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
D MI Y +D AM+ + G P T+ +LI L AG V+ VR
Sbjct: 67 DLVTVNNMIKCYGCANRVDDAMDLFREFPDFGFEPDVCTYALLIDLLGKAGR---VSEVR 123
Query: 222 R 222
+
Sbjct: 124 K 124
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
N +D A+ +F + ++PD+ Y+ +I +LGK +++ +LF EL+ L PD V
Sbjct: 82 NRVDDAMDLFREF-PDFGFEPDVCTYALLIDLLGKAGRVSEVRKLFLELQSRKLKPDEYV 140
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ MI + + + A E + MK G P +T+ I++
Sbjct: 141 FNSMIANFSKWKDLGLADEALDYMKVCGIRPSTVTYAIVL 180
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
Query: 108 LDLALKVFNFVRKEVWY--------KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGL 159
L++ K NF+ E Y PDL +Y++ IL G + AE +++K GL
Sbjct: 180 LNMYAKSLNFMLAEKIYCEYLNSNLPPDLYVYNNAILFFGLAGRCREAEWAVEDIEKAGL 239
Query: 160 DPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAA 219
PD Y +I + + G A + ++ ++ G TP LI A + E VAA
Sbjct: 240 VPDKFSYCTIISAWARQGCAPDAKKWFDKARSRGITPSPEMCNALIDAYIKALDLEPVAA 299
Query: 220 V 220
+
Sbjct: 300 I 300
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ + +L LA + +++ K +P Y+ ++ M K+ +AE+++CE
Sbjct: 145 IANFSKWKDLGLADEALDYM-KVCGIRPSTVTYAIVLNMYAKSLNFMLAEKIYCEYLNSN 203
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
L PD VY I + G +A E ++ +G P K ++ +I G
Sbjct: 204 LPPDLYVYNNAILFFGLAGRCREAEWAVEDIEKAGLVPDKFSYCTIISAWARQG 257
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPDL ++MI G ++ A +LF E G +PD Y +I + + G + + +
Sbjct: 65 KPDLVTVNNMIKCYGCANRVDDAMDLFREFPDFGFEPDVCTYALLIDLLGKAGRVSEVRK 124
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
+ +++ P + F +I N
Sbjct: 125 LFLELQSRKLKPDEYVFNSMIANF 148
>gi|297600539|ref|NP_001049380.2| Os03g0215900 [Oryza sativa Japonica Group]
gi|108706847|gb|ABF94642.1| RSP67.2, putative, expressed [Oryza sativa Japonica Group]
gi|255674311|dbj|BAF11294.2| Os03g0215900 [Oryza sativa Japonica Group]
Length = 676
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 118 VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177
VRKEV LY+ + L K ++ + AE L+ E+ +EG+ PD ++ +I G
Sbjct: 145 VRKEV------ILYNVALKALRKRRRWSDAEALWEEMLREGVQPDNATFSTVISCARACG 198
Query: 178 MIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
M KA+E +E M GC+P LT++ +I AG+ E
Sbjct: 199 MPGKAVEWFEKMPDFGCSPDMLTYSAVIDAYGRAGDAE 236
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD YS M+ + +A AE + E+ + G P+ + T +I Y + G D +
Sbjct: 394 KPDSWSYSSMVTLYSCTGNVAGAEGILNEMVEAGFKPNIFILTSLIRCYGKAGRTDDVVR 453
Query: 185 TYETMKASGCTP 196
++ ++ G TP
Sbjct: 454 SFAMLEDLGITP 465
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD----PDTRVY 166
A+ V+ ++ EV D+ LY+ ++ M + AEE+F ++K +D PD+ Y
Sbjct: 343 AMAVYRVMKDEV-MDIDVVLYNMLLSMCADIGYVEEAEEIFRDMKAS-MDSRSKPDSWSY 400
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
+ M+ +Y G + A M +G P+ T LIR AG + V
Sbjct: 401 SSMVTLYSCTGNVAGAEGILNEMVEAGFKPNIFILTSLIRCYGKAGRTDDV 451
>gi|440793601|gb|ELR14780.1| PPR repeat/pentatricopeptide repeat domain containing protein,
partial [Acanthamoeba castellanii str. Neff]
Length = 610
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 95 LLDTLTELRRQNE-LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
L+ L +L+R + LDL ++ + Y PD+ + + ++ LG+ ++ A+ F E
Sbjct: 89 LIALLGKLQRTDAALDLVTRM-----TQQGYVPDVFVLTALVSALGRAGEVGKAQYFFNE 143
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+++ G+ P Y MI + + G IDK + E MK G P T+T +I N AG
Sbjct: 144 IQRLGMTPTLHSYNSMIMAFARAGRIDKVRDMLEVMKHKGIEPDVRTYTEIINNSCKAG 202
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ L R E+ A FN +++ + P L Y+ MI+ + +I ++ +K +G
Sbjct: 125 VSALGRAGEVGKAQYFFNEIQR-LGMTPTLHSYNSMIMAFARAGRIDKVRDMLEVMKHKG 183
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
++PD R YTE+I + G + +A +T+ M+ G P ++ LI + G+
Sbjct: 184 IEPDVRTYTEIINNSCKAGRVAEAYQTFIEMQDVGVQPDLKVYSALIAGFSHVGD 238
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDL---SLYSDMILMLGKNKQIAMAEELFCELKKEGLD 160
+ ++++ +++ + +R + P+L S Y +I K +++ L ++K +
Sbjct: 340 KADDVEKGIRILDVMRS---HSPELVSASSYCVLIDTFAKAGRVSRGATLLAHMRKHKIK 396
Query: 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
PD +Y I ++ KA++ +E MKA G P TF+ILI +AG E
Sbjct: 397 PDVSIYNVFIEGAMRETGYSKALQVFELMKAEGVRPSHTTFSILIDAAGHAGRPE 451
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%)
Query: 118 VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177
V K +PD+ Y+++I K ++A A + F E++ G+ PD +VY+ +I + VG
Sbjct: 178 VMKHKGIEPDVRTYTEIINNSCKAGRVAEAYQTFIEMQDVGVQPDLKVYSALIAGFSHVG 237
Query: 178 MIDKAMETYETMKASGCTPHKLTFTILIRNL 208
KA + E M+A G +T++ ++ L
Sbjct: 238 DHLKAQQLKEEMEALGLEASMITYSGMLSGL 268
>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
Length = 596
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 105 QNELDLALKVFNF-VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ LD A ++F F V K+ + PD+ Y+ +I K+K++ ELF E+ GL DT
Sbjct: 340 HDRLDKAKQMFEFMVSKDCF--PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDT 397
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
YT +I G D A + ++ M + G P +T++IL+ L N G+ E
Sbjct: 398 VTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE 449
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L +L+ AL+VF++++K K D+ +Y+ MI + K ++ +LFC L +G
Sbjct: 439 LDGLCNNGKLEKALEVFDYMQKS-EIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKG 497
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI----RNLENAGEE 214
+ P+ Y MI ++ +A + MK G P+ T+ LI R+ + A
Sbjct: 498 VKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASA 557
Query: 215 ELVAAVR 221
EL+ +R
Sbjct: 558 ELIREMR 564
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
P+L ++ +I K + AE+L+ ++ K +DPD Y ++ + +DKA +
Sbjct: 289 NPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQ 348
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
+E M + C P +T+ LI+
Sbjct: 349 MFEFMVSKDCFPDVVTYNTLIKGF 372
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + D A KVF + + PD+ YS ++ L N ++ A E+F ++K +
Sbjct: 407 LFHDGDCDNAQKVFKQMVSD-GVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL 465
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
D +YT MI + G +D + + ++ G P+ +T+ +I L
Sbjct: 466 DIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGL 512
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R++++ LAL + + K + Y+P + S ++ K+I+ A L ++ + G PDT
Sbjct: 94 RRSQISLALALLGKMMK-LGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDT 152
Query: 164 RVYTEMI-GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
+T +I G++L +A+ + M GC P+ +T+ +++ L G+ +L
Sbjct: 153 ITFTTLIHGLFLH-NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDL 205
>gi|297793055|ref|XP_002864412.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310247|gb|EFH40671.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1245
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 15/158 (9%)
Query: 79 LEEGFQSR-----IC--RLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLY 131
L GF R +C R+ ++D L + LD A+ + N + K+ PD+ Y
Sbjct: 386 LARGFYMRMKRNGVCVGRITYTGMIDGLC---KNGFLDEAVVMLNEMSKD-GIDPDIVTY 441
Query: 132 SDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA 191
S +I + ++ A+E+ C + + GL P+ +Y+ +I ++G + + + YE M
Sbjct: 442 SALINGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKETIRIYEAMIL 501
Query: 192 SGCTPHKLTFTILIRNLENAGE----EELVAAVRRDCI 225
G TP TF +L+ +L AG+ EE + + D I
Sbjct: 502 EGNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGI 539
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
ALK+F+ + + ++S Y ++ L KN + +A + +K+ G+ YT MI
Sbjct: 352 ALKMFHMMEAKGLIGTEVS-YGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMI 410
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRR 222
+ G +D+A+ M G P +T++ LI G +E+V + R
Sbjct: 411 DGLCKNGFLDEAVVMLNEMSKDGIDPDIVTYSALINGFCRVGRLKTAKEIVCRIYR 466
>gi|413955492|gb|AFW88141.1| hypothetical protein ZEAMMB73_138069 [Zea mays]
Length = 1091
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 70/174 (40%), Gaps = 23/174 (13%)
Query: 62 EAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTEL-RRQNELDLALKVFNFVRK 120
EA+ MK K S + + S I LKAD+ D EL N + + V
Sbjct: 364 EALAVFDEMK-EKGMSPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLF 422
Query: 121 EVWYK---------------------PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGL 159
+Y PD++ + ++ L + ++ MA+ +F ELK G+
Sbjct: 423 INYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFYELKAMGV 482
Query: 160 DPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
PDT YT MI + D+AM + M SGC P L LI L G+
Sbjct: 483 SPDTITYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTLYKGGK 536
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 13/149 (8%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+DTL R N+ L F + E+ +PDL +Y+ +I LGK+++I A LF E+
Sbjct: 947 LIDTLCTAGRLND---GLCYFRQLH-ELGLEPDLIVYNLLIDGLGKSERIEEAVSLFNEM 1002
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
KK+G+ P+ Y +I + G +A + YE + G P T+ LIR +G
Sbjct: 1003 KKKGIIPNLYTYNSLILHLGKAGKAAEAAQMYEELLRKGWKPSVFTYNALIRGYSVSGST 1062
Query: 215 E---------LVAAVRRDCIQYVEFPERF 234
+ +V + + Y++ P +
Sbjct: 1063 DNAYAAYGQMIVGGCQPNSSTYMQLPNQL 1091
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 56/109 (51%), Gaps = 9/109 (8%)
Query: 121 EVW-------YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY 173
EVW Y ++ Y+ ++ L + ++ A +F E+K++G+ P+ Y +I +
Sbjct: 332 EVWNAMVADGYNDNIVSYTAVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISGF 391
Query: 174 LQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
L+ M D+A+E + M A G +P+ T + I +G+ + A++R
Sbjct: 392 LKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQS--LKAIQR 438
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + YS +++ GK + + L E++ G+ P+ YT I V Q D+A
Sbjct: 204 PSVRTYSVLMVAFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYHI 263
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
M+ SGC P +T T++I+ L +AG
Sbjct: 264 LGKMEDSGCKPDVVTHTVIIQVLCDAG 290
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ Y+ I +LG+ + A + +++ G PD +T +I V G + A
Sbjct: 238 KPNVYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDAKA 297
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+ MKAS P ++T+ L+ ++G+ + V V
Sbjct: 298 VFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVVEV 333
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Query: 76 SSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMI 135
++ + +G+ I ++D L ++ R +E AL VF+ + KE P+ Y+ +I
Sbjct: 335 NAMVADGYNDNIVSYTA--VVDALCQVGRVDE---ALAVFDEM-KEKGMSPEQYSYNSLI 388
Query: 136 LMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCT 195
K A ELF + G P+ + I Y + G KA++ YE MK+ G
Sbjct: 389 SGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIV 448
Query: 196 PHKLTFTILIRNLENAG 212
P ++ +L +G
Sbjct: 449 PDVAAANAVLYSLAGSG 465
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + E++ A+ + + E PDLS Y+ ++ L K +++ A +FC++KK L P
Sbjct: 601 LSKNGEVNCAIDML-YSMTEKGCAPDLSSYNTVMYGLIKEERLEEAFRMFCQMKKI-LAP 658
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETY-ETMKASGCTPHKLTFTILIRN-LENAGEEELV 217
D ++ +++ G++ +A+ T E + +GC K +F L+ L+ AG E+ +
Sbjct: 659 DYATLCTILPSFVKNGLMKEALHTVKEYILKAGCNVDKSSFHSLMEGILKKAGVEKSI 716
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y+ Y+ +I L K+K++ A +L+ L EG P Y ++ L+ G + A
Sbjct: 832 YESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVDAE 891
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
+ M GC P+ + IL+ AG E V
Sbjct: 892 NLFNEMLEYGCEPNCTIYNILLNGHRIAGNTENV 925
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD Y ++ G + E++ + +G + + YT ++ QVG +D+A+
Sbjct: 308 KPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVVDALCQVGRVDEALA 367
Query: 185 TYETMKASGCTPHKLTFTILIRNLENA 211
++ MK G +P + ++ LI A
Sbjct: 368 VFDEMKEKGMSPEQYSYNSLISGFLKA 394
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%)
Query: 118 VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177
V +E + Y+ +I L K+ A A E++ + ++G+ P R Y+ ++ + +
Sbjct: 161 VMREAGMSLNAYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKR 220
Query: 178 MIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
+D + M+A G P+ ++TI IR L A
Sbjct: 221 DVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQA 254
Score = 36.6 bits (83), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 10/164 (6%)
Query: 61 SEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRK 120
S+A +A AM S +E G + L L+DTL + + NE A ++F+ + K
Sbjct: 497 SKASKADEAMNFF--SDMVESGCVPDVLAL--NSLIDTLYKGGKGNE---AWQLFHKL-K 548
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E+ +P Y+ ++ LG+ ++ +L E+ + P+ Y ++ + G ++
Sbjct: 549 EMKIEPTNGTYNTLLSGLGREGKVKEVMQLLEEMTRTIYPPNLITYNTVLDCLSKNGEVN 608
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDC 224
A++ +M GC P ++ ++ L EE L A R C
Sbjct: 609 CAIDMLYSMTEKGCAPDLSSYNTVMYGL--IKEERLEEAFRMFC 650
Score = 36.6 bits (83), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 134 MILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG 193
+I L K+K+ A +LF + K G+ T Y +I + +ID A + + MK G
Sbjct: 737 LIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLG 796
Query: 194 CTPHKLTFTILI 205
C P + T+ +++
Sbjct: 797 CGPDEFTYNLIL 808
>gi|334184699|ref|NP_001189682.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330253975|gb|AEC09069.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 613
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+S Y+ +I + GK + EELF ELK++ PD +T IG Y + + K +E +
Sbjct: 495 DISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVF 554
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
E M SGC P T +L+ + + E V +V R
Sbjct: 555 EEMIDSGCAPDGGTAKVLLSACSSEEQVEQVTSVLR 590
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ Y+ ++ + AEE+F +L+++GL+PD VY ++ Y + G A E
Sbjct: 318 KPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAE 377
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ M+ GC P + ++ I++ AG
Sbjct: 378 IFSLMQHMGCEPDRASYNIMVDAYGRAG 405
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
++R+ + A+ VF ++++ KP Y+ MI + GK + M+ +L+CE++ P
Sbjct: 261 MKRKGNTEEAIDVFQRMKRDRC-KPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKP 319
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ YT ++ + + G+ +KA E +E ++ G P + L+ + AG
Sbjct: 320 NICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAG 370
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 52/110 (47%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
DL++ +LR + D + V ++ ++ ++PD+ ++ +I G+ Q AE L+ +
Sbjct: 143 DLINVSVQLRLNKKWDSIILVCEWILRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQ 202
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTI 203
L + P Y +I Y G+I++A M+ +P + T+
Sbjct: 203 LLESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTV 252
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 129 SLYSDMILM--LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
++ S M+L+ K + + E + E+ + G++PDT V M+ +Y ++G K +
Sbjct: 425 TMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKIL 484
Query: 187 ETMKASGCTPHKLTFTILIRNLENAG 212
M+ CT T+ ILI AG
Sbjct: 485 AEMENGPCTADISTYNILINIYGKAG 510
Score = 37.0 bits (84), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 39/87 (44%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ +Y+ ++ + A E+F ++ G +PD Y M+ Y + G+ A
Sbjct: 353 EPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEA 412
Query: 185 TYETMKASGCTPHKLTFTILIRNLENA 211
+E MK G P + +L+ A
Sbjct: 413 VFEEMKRLGIAPTMKSHMLLLSAYSKA 439
>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 529
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 67/127 (52%), Gaps = 8/127 (6%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LLD L + QN LD A +F KE +P + Y+ +I L K ++ A+ELF L
Sbjct: 366 LLDALC--KNQN-LDKATALF-MKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHL 421
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL----EN 210
+G D YT MI + GM D+A+ M+ +GC P+ +TF I+IR+L EN
Sbjct: 422 LVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDEN 481
Query: 211 AGEEELV 217
E+L+
Sbjct: 482 DKAEKLL 488
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ Y+ ++ L KN+ + A LF ++K+ G+ P YT +I + G + A E +
Sbjct: 359 DVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELF 418
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR-----RDCIQYVEFPERFLEEVYQK 241
+ + GC T+T++I L G + A++ CI E + +++K
Sbjct: 419 QHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEK 478
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ +Y+ +I L K+K + A +L+ E+ G+ PD YT +I + +G + A
Sbjct: 147 RPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFS 206
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRRDCIQ 226
+ M P + ILI L G + L+A + ++ I+
Sbjct: 207 LLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIK 252
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 38/87 (43%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ +I L K+ +I A L E+ G D YT ++ + +DKA
Sbjct: 323 PDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATAL 382
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ MK G P T+T LI L G
Sbjct: 383 FMKMKERGIQPTMYTYTALIDGLCKGG 409
>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Glycine max]
Length = 556
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 22/174 (12%)
Query: 60 SSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLD----TLTELRRQNELDL----- 110
+ +A+ +H M + + L F + +C L++++ D EL+ + LD
Sbjct: 105 TDQALTFLHHM-IHEGHVPLSNTFNNLMCLLIRSNYFDKAWWIFNELKSKVVLDAYSFGI 163
Query: 111 ----ALKVFNFVR--------KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ FV+ +E P++ +Y+ +I K + +A+ LFC++ + G
Sbjct: 164 MIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLG 223
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
L P+ Y+ ++ + + G+ + + YE MK SG P+ + LI N G
Sbjct: 224 LVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNGG 277
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 5/131 (3%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++E +D A KVF +R E + Y+ +I L + K+ A +L ++ K G
Sbjct: 270 ISEYCNGGMVDKAFKVFAEMR-EKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVG 328
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN---LEN-AGEE 214
L P+ Y +I + VG +D A+ + +K+SG +P +T+ LI +EN AG
Sbjct: 329 LSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGAL 388
Query: 215 ELVAAVRRDCI 225
+LV + CI
Sbjct: 389 DLVKEMEERCI 399
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
++D A+++FN + K P L Y+ +I K + +A A +L E+++ + P Y
Sbjct: 348 KMDTAVRLFNQL-KSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTY 406
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
T +I + ++ +KA E + M+ SG P T+++LI L
Sbjct: 407 TILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGL 448
>gi|255660912|gb|ACU25625.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
Length = 481
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K++ AE+ F E+K ++P YT +I Y+ V +D A+
Sbjct: 183 PDVVTYNTMINGYYRVKKMXEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L NA
Sbjct: 243 VEEMKGFGIKPNAITYSTLLPGLCNA 268
>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Glycine max]
Length = 804
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 16/173 (9%)
Query: 47 DANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLL--------KADLLDT 98
D N+ W LS Q +H + + S E + R L +D+L
Sbjct: 67 DPNRGKPWSPHRLSPTGQQILHTLSHSNSLHLDLELDLDHVLRPLLLSDHPHPASDILGI 126
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSD-----MILMLGKNKQIAMAEELFCE 153
+ L N+ DLAL VF++VR + +L+S +I +LGK +++ A L
Sbjct: 127 IKALGFSNKCDLALAVFHWVRTN---NSNTNLFSSSAIPVIIKILGKAGRVSSAASLLLA 183
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
L+ +G+ D YT +I Y G A+ + M+ GC P +T+ +++
Sbjct: 184 LQNDGVHIDVYAYTCLINAYSSSGRYRDAVNLFNKMQQDGCNPTLITYNVVLN 236
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 103 RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
RR + + A+ +F ++ E + PD Y+ ++ + GK+++ A ++ E++ G P
Sbjct: 275 RRGSLYEEAVHLFQQMKLE-GFTPDKVTYNALLDVFGKSRRPQEAMKVLQEMEANGFSPT 333
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+ Y +I Y + G++++A++ M G P T+T L+ E AG+++ V
Sbjct: 334 SVTYNSLISAYAKGGLLEEALDLKTQMVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQV 391
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 14/159 (8%)
Query: 55 RSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKV 114
R L EA+ MKL EGF ++ LLD + RR E A+KV
Sbjct: 275 RRGSLYEEAVHLFQQMKL--------EGFTPD--KVTYNALLDVFGKSRRPQE---AMKV 321
Query: 115 FNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYL 174
+ + P Y+ +I K + A +L ++ +G+ PD YT ++ +
Sbjct: 322 LQEMEAN-GFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVHKGIKPDVFTYTTLLSGFE 380
Query: 175 QVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ G D A++ + M+A GC P+ TF LI+ N G+
Sbjct: 381 KAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGK 419
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A ++ NF+ E + P L+ Y+ ++ M +++ +EE+ E+ ++G+ PD Y +I
Sbjct: 633 AHEILNFMH-ETRFTPSLTTYNSLMYMYSRSENFQKSEEILREVLEKGMKPDRISYNTVI 691
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y + G + +A + MK S P +T+ I
Sbjct: 692 YAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTFI 726
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 43/87 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ ++ ++ + G+N + +F E+K+ G + + +I Y + G D+AM
Sbjct: 437 PDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAV 496
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
Y++M +G P T+ ++ L G
Sbjct: 497 YKSMLEAGVVPDLSTYNAVLAALARGG 523
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD Y+ +I +N ++ A +F E+K L PD Y I Y M +A++
Sbjct: 681 KPDRISYNTVIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTFIATYAADSMFAEAID 740
Query: 185 TYETMKASGCTPHKLTFTILI 205
M GC P + T+ ++
Sbjct: 741 VVRYMIKQGCKPDQNTYNSIV 761
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 1/134 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L+ + + D A++VF +R V KP++ ++ +I M G + A ++F ++K
Sbjct: 376 LSGFEKAGKDDFAIQVFLEMRA-VGCKPNICTFNALIKMHGNRGKFAEMMKVFDDIKLCN 434
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
PD + ++ V+ Q GM + ++ MK +G + TF LI G +
Sbjct: 435 CSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAM 494
Query: 219 AVRRDCIQYVEFPE 232
AV + ++ P+
Sbjct: 495 AVYKSMLEAGVVPD 508
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL Y+ +I + A LF ++K EG PD Y ++ V+ + +AM+
Sbjct: 262 PDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYNALLDVFGKSRRPQEAMKV 321
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG--EEEL 216
+ M+A+G +P +T+ LI G EE L
Sbjct: 322 LQEMEANGFSPTSVTYNSLISAYAKGGLLEEAL 354
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%)
Query: 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM 189
L ++L+ K+ + E F EL++ G+ PD M+ +Y + M+ KA E M
Sbjct: 581 LLKTLVLVNSKSDLLIETERAFLELRRRGISPDITTLNAMLSIYGRKQMVAKAHEILNFM 640
Query: 190 KASGCTPHKLTFTILI 205
+ TP T+ L+
Sbjct: 641 HETRFTPSLTTYNSLM 656
>gi|110738632|dbj|BAF01241.1| hypothetical protein [Arabidopsis thaliana]
Length = 508
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 118 VRKEVW---YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYL 174
+R++ W +PDL +Y+ ++ Q +F EL+K GL P+ Y + V L
Sbjct: 38 LRQKNWDPVLEPDLVVYNAILNACVPTLQWKAVSWVFVELRKNGLRPNGATYGLAMEVML 97
Query: 175 QVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE-EELVAAVR 221
+ G D+ + + MK+SG P +T+ +L+R L G+ EE V AVR
Sbjct: 98 ESGKFDRVHDFFRKMKSSGEAPKAITYKVLVRALWREGKIEEAVEAVR 145
>gi|15226907|ref|NP_181058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100538|sp|O82178.1|PP186_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g35130
gi|3668091|gb|AAC61823.1| hypothetical protein [Arabidopsis thaliana]
gi|330253974|gb|AEC09068.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 591
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+S Y+ +I + GK + EELF ELK++ PD +T IG Y + + K +E +
Sbjct: 473 DISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVF 532
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
E M SGC P T +L+ + + E V +V R
Sbjct: 533 EEMIDSGCAPDGGTAKVLLSACSSEEQVEQVTSVLR 568
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ Y+ ++ + AEE+F +L+++GL+PD VY ++ Y + G A E
Sbjct: 296 KPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAE 355
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ M+ GC P + ++ I++ AG
Sbjct: 356 IFSLMQHMGCEPDRASYNIMVDAYGRAG 383
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
++R+ + A+ VF ++++ KP Y+ MI + GK + M+ +L+CE++ P
Sbjct: 239 MKRKGNTEEAIDVFQRMKRDRC-KPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKP 297
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ YT ++ + + G+ +KA E +E ++ G P + L+ + AG
Sbjct: 298 NICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAG 348
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 52/110 (47%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
DL++ +LR + D + V ++ ++ ++PD+ ++ +I G+ Q AE L+ +
Sbjct: 121 DLINVSVQLRLNKKWDSIILVCEWILRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQ 180
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTI 203
L + P Y +I Y G+I++A M+ +P + T+
Sbjct: 181 LLESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTV 230
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 129 SLYSDMILM--LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
++ S M+L+ K + + E + E+ + G++PDT V M+ +Y ++G K +
Sbjct: 403 TMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKIL 462
Query: 187 ETMKASGCTPHKLTFTILIRNLENAG 212
M+ CT T+ ILI AG
Sbjct: 463 AEMENGPCTADISTYNILINIYGKAG 488
Score = 37.0 bits (84), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 49/111 (44%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ +Y+ ++ + A E+F ++ G +PD Y M+ Y + G+ A
Sbjct: 331 EPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEA 390
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFL 235
+E MK G P + +L+ A + A+ ++ + P+ F+
Sbjct: 391 VFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFV 441
>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
lyrata]
gi|297313772|gb|EFH44195.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
lyrata]
Length = 817
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ YS MI K ++ ++LF E+ L P+T VY +IG Y + G + A+E
Sbjct: 600 PDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALEL 659
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
E MK G +P+ T+T LI+ +
Sbjct: 660 REDMKHKGISPNSATYTSLIKGM 682
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
LT L R E + F+ V K V PD+ L++ I K ++ A ELF ++++ G
Sbjct: 225 LTSLVRATEFQKCCEAFHVVCKGV--SPDVYLFTTAINAFCKGGKVEEAIELFSKMEEAG 282
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
+ P+ Y +I G D+A E M G P +T++IL++ L A
Sbjct: 283 VVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGVEPTLITYSILVKGLTKA 335
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 71/146 (48%), Gaps = 16/146 (10%)
Query: 104 RQNELDLALKVFNFVRKEVWYK---PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD 160
R L +AL++ R+++ +K P+ + Y+ +I + ++ A+ L E++ EGL+
Sbjct: 649 RSGRLSMALEL----REDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLLEEMRMEGLE 704
Query: 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE----EEL 216
P+ YT +I Y ++G + K M + P+K+T+T++I G L
Sbjct: 705 PNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRL 764
Query: 217 VAAVRR-----DCIQYVEFPERFLEE 237
+ +R D I Y EF +L++
Sbjct: 765 LHEMREKGIVPDSITYKEFIYGYLKQ 790
Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 40/75 (53%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ +I NK++ A E+ K+GL PD Y+ +I L + +++A++ + K
Sbjct: 535 YNTLISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGLLNMNKVEEAIQFWGDCK 594
Query: 191 ASGCTPHKLTFTILI 205
+G P T++++I
Sbjct: 595 RNGMIPDVYTYSVMI 609
>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
Length = 948
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 5/117 (4%)
Query: 104 RQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
RQ + A ++F+ + K+++ P + +Y+ +I L +I+ AE +F ++ G+ P+
Sbjct: 205 RQGDFLKAFRLFDEMIEKKIF--PTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPN 262
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAA 219
Y M+ Y ++ + KA+E Y+ M G P+ +TF ILI L +E+V+A
Sbjct: 263 LYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGL--CKTDEMVSA 317
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ YS +I L ++ A+ L E+KK+G P+ Y +I Y + G ++KA+E
Sbjct: 366 PDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEV 425
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE---------EELVAAVRRDCIQYV-----EFP 231
M G P+ +TF+ LI AG+ E ++ + D + Y F
Sbjct: 426 CSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFK 485
Query: 232 ERFLEEVYQKHRKTQ 246
+ +E ++ H++ Q
Sbjct: 486 DGNTKEAFRLHKEMQ 500
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ +S +I K ++ A L+ E+ +GL PD YT +I + + G +A
Sbjct: 435 EPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFR 494
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
++ M+ +G P+ T + LI L G
Sbjct: 495 LHKEMQEAGLHPNVFTLSCLIDGLCKDG 522
>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 545
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 65/123 (52%), Gaps = 5/123 (4%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L + + N +D A+ + + KE +PD+ Y+ +I L K ++ A+++F +L +G
Sbjct: 415 LDAICKNNHVDKAIVLLTKI-KEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKG 473
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL----ENAGEE 214
P+ YT +I + G D+ + MK +GC P+ +T+ ILI +L EN E
Sbjct: 474 YSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILIHSLFEKDENDKAE 533
Query: 215 ELV 217
+L+
Sbjct: 534 KLL 536
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ +YS +I + K+K + A +L+CE+ + + PD Y+ +I + VG + A++
Sbjct: 195 RPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVD 254
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
+ M + P+ TF+ILI G+
Sbjct: 255 LFNRMISDNINPNVYTFSILIDGFCKEGK 283
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ ++ + KN + A L ++K++G+ PD YT +I +VG +D A + +E +
Sbjct: 411 YNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLL 470
Query: 191 ASGCTPHKLTFTILIRNLENAG 212
G +P+ T+T LI N G
Sbjct: 471 VKGYSPNIYTYTSLINGFCNKG 492
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF 201
KQ+ A+ LF + + G+ PD Y+ MI + ++ M+D+AM+ +E M P+ +T+
Sbjct: 317 KQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTY 376
Query: 202 TILIRNLENAG 212
L+ L +G
Sbjct: 377 NSLVDGLCKSG 387
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Query: 108 LDLALKVFNFVR-KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
+D A+K+F + K+++ P++ Y+ ++ L K+ + + A EL E+ G + Y
Sbjct: 354 VDEAMKLFEEMHCKQIF--PNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITY 411
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
++ + +DKA+ +K G P T+T+LI L G
Sbjct: 412 NSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVG 457
>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 536
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKE-GLDPDTRVYTEMIGVYLQVGMIDKAME 184
PD+ Y+ +I K+ ++ A E+F ++K G PD YT MI Y + G + +A
Sbjct: 239 PDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQEASV 298
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
+ M G P +TF +L+ AGE +R I + FP+
Sbjct: 299 LLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPD 346
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+ YS +I L K ++ A EL +L + + P +Y +I + + G +++A+
Sbjct: 380 PNAFTYSILINALCKENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVI 439
Query: 186 YETMKASGCTPHKLTFTILI 205
E M+ C P K+TFTILI
Sbjct: 440 VEEMEKKKCKPDKITFTILI 459
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 35/140 (25%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMI-------------------LMLG----- 139
+ NEL A ++F+ V+ PD+ Y+ MI L LG
Sbjct: 253 KSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTN 312
Query: 140 -----------KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYET 188
K ++ AEE+ ++ G PD +T +I Y +VG +++ +E
Sbjct: 313 VTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEE 372
Query: 189 MKASGCTPHKLTFTILIRNL 208
M A G P+ T++ILI L
Sbjct: 373 MNARGMFPNAFTYSILINAL 392
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P +Y+ +I K ++ A + E++K+ PD +T +I + G + +A+
Sbjct: 415 PQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSI 474
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ M A GC+P K+T + L+ L AG
Sbjct: 475 FHKMVAIGCSPDKITVSSLLSCLLKAG 501
>gi|359484268|ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Vitis vinifera]
Length = 641
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 11/138 (7%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL-KKEGLD 160
L R ++D A ++FN +R PD+ Y+ +I + ++ +L EL K L
Sbjct: 247 LCRIGKVDKAFELFNEMRG-FGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLS 305
Query: 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL---------ENA 211
PD YT +I Y ++G ++KA + M +SG P+ TF ILI EN
Sbjct: 306 PDVVTYTSIISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENM 365
Query: 212 GEEELVAAVRRDCIQYVE 229
EE L+ D I +
Sbjct: 366 YEEMLLLGCPPDIITFTS 383
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R NE+D + + + PD+ Y+ +I K ++ A LF + G+ P+
Sbjct: 284 RVNEVDRGHDLLKELLSKNDLSPDVVTYTSIISGYCKLGKMEKASILFNNMISSGIKPNA 343
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ +I + +VG + A YE M GC P +TFT LI G+ E
Sbjct: 344 FTFNILINGFGKVGDMVSAENMYEEMLLLGCPPDIITFTSLIDGHCRTGKVE 395
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 44/84 (52%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP+ ++ +I GK + AE ++ E+ G PD +T +I + + G ++++++
Sbjct: 340 KPNAFTFNILINGFGKVGDMVSAENMYEEMLLLGCPPDIITFTSLIDGHCRTGKVERSLK 399
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
+ + A +P++ TF IL L
Sbjct: 400 LWHELNARNLSPNEYTFAILTNAL 423
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%)
Query: 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM 189
+Y+ +I K + A + E++++ PD YT +I + G + +A+ + M
Sbjct: 450 MYNPVIDGFCKAGNVDEANVILAEMEEKRCKPDKITYTILIIGHCMKGRLSEAISIFNRM 509
Query: 190 KASGCTPHKLTFTILIRNLENAG 212
+GC P +T T LI L AG
Sbjct: 510 LGTGCAPDSITMTSLISCLLKAG 532
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 115 FNFVRKEV-WYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE-GLDP--DTRVYTEMI 170
FN R V + L +Y+ ++ L + Q+ +E C +++ GL D+ + +I
Sbjct: 188 FNIARTWVDGVEFSLVVYNKLLNQLVRGNQV---DEAVCFFREQMGLHGPFDSCSFNILI 244
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
++G +DKA E + M+ GC+P +T+ LI E
Sbjct: 245 RGLCRIGKVDKAFELFNEMRGFGCSPDVITYNTLINGFCRVNE 287
>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 906
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 6/130 (4%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+ +D AL + + ++ + DL LY+ I GK ++ MA + F E+K +GL PD
Sbjct: 250 REGRIDAALSLLDEMKSNS-FTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDD 308
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV--- 220
YT +IGV + +D+A+E +E + + P + +I +AG+ + ++
Sbjct: 309 VTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLER 368
Query: 221 --RRDCIQYV 228
R+ CI V
Sbjct: 369 QKRKGCIPSV 378
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L N D L +F+ + +E+ Y+ ++ L++ ++ + + +I A L E+K
Sbjct: 210 IGALSAANRPDPMLTLFHQM-QEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNS 268
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
D +Y I + +VG +D A + + MKA G P +T+T LI
Sbjct: 269 FTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLI 315
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 72/142 (50%), Gaps = 10/142 (7%)
Query: 71 KLAKSSSKLEE----GFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKP 126
K+ K+ LEE G Q + + ++D L ++ R LD A +F K +
Sbjct: 637 KVDKAYQLLEEMKTKGLQPTV--VTYGSVVDGLAKIDR---LDEAYMLFEEA-KSIGVDL 690
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
++ +YS +I GK +I A + EL ++GL P++ + ++ ++ ID+A +
Sbjct: 691 NVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCF 750
Query: 187 ETMKASGCTPHKLTFTILIRNL 208
+ MK C+P+ +T++I+I L
Sbjct: 751 QNMKNLKCSPNAMTYSIMINGL 772
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + EL+ ALKV + KE P++ + MI L K +++ A +F L + P
Sbjct: 422 LCKAGELEAALKVQD-TMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSP 480
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
D+R + +I + G +D A YE M S P+ + +T LI+N G +E
Sbjct: 481 DSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKE 534
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LLD L + E+D A F + K + P+ YS MI L ++ A + E+
Sbjct: 733 LLDALV---KAEEIDEAQVCFQNM-KNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEM 788
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+K+GL P+ YT MI + G + +A ++ KASG P + +I L +A +
Sbjct: 789 QKQGLKPNNITYTTMIAGLAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSSANK 847
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ YS +I L K +LF E+K++GL D Y +I + + G +DKA +
Sbjct: 585 PDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQL 644
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
E MK G P +T+ ++ L
Sbjct: 645 LEEMKTKGLQPTVVTYGSVVDGL 667
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P + Y ++ L K ++ A LF E K G+D + +Y+ +I + +VG ID+A
Sbjct: 654 QPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYL 713
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
E + G TP+ T+ L+ L A E
Sbjct: 714 ILEELMQKGLTPNSYTWNCLLDALVKAEE 742
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
LT L R+ +++ AL++ + +R++ P+L+ Y+ +I ML K ++ A ++ +K+ G
Sbjct: 385 LTCLGRKGKVEEALRIHDEMRQDA--APNLTTYNILIDMLCKAGELEAALKVQDTMKEAG 442
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
L P+ MI + +D+A + + C+P TF LI L G
Sbjct: 443 LFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRG 496
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 9/105 (8%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP+ Y+ MI L K + A LF K G PD+ Y MI + +KAM+
Sbjct: 794 KPNNITYTTMIAGLAKAGNVMEARGLFDRFKASGGVPDSACYNAMIE---GLSSANKAMD 850
Query: 185 TY---ETMKASGCTPHKLTFTILIRNLENAG---EEELVAAVRRD 223
Y E + GC + T +L+ L A + +V AV R+
Sbjct: 851 AYIVFEETRLKGCRVNSKTCVVLLDALHKADCLEQAAIVGAVLRE 895
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L + +LD A +F + +V PD + +I LG+ ++ A L+ ++
Sbjct: 454 IDRLCKAQKLDEACSIFLGLDHKVC-SPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSD 512
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
P+ VYT +I + + G + + Y+ M GC+P + + + AGE E
Sbjct: 513 QIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVE 569
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL L + + + K ++ LF E+K +GL PD R Y+ +I ++ G + +
Sbjct: 550 PDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKL 609
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+ MK G L + +I +G+
Sbjct: 610 FYEMKEQGLHLDVLAYNTVIDGFCKSGK 637
>gi|449507993|ref|XP_004163187.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g37230-like [Cucumis sativus]
Length = 760
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K + AE+ F E+K + + P YT MI Y+ V D A+
Sbjct: 292 PDVVTYNTMINGYCRFKMMEEAEQFFTEMKGKNIAPTVISYTTMIKGYVSVSRADDALRL 351
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
+E MKA+G P+ +T++ L+ L +A
Sbjct: 352 FEEMKAAGEKPNDITYSTLLPGLCDA 377
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A+K+F + KE+ + + Y + + + + MA+ F + EG++P Y M+
Sbjct: 208 AVKIFQKM-KELGVERSVKSYDALFKEIMRRGRYMMAKRYFNAMLNEGIEPIRHTYNVML 266
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ ++ A YE MK+ G +P +T+ +I
Sbjct: 267 WGFFLSLRLETAKRFYEDMKSRGISPDVVTYNTMI 301
>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 907
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+ +LD AL + ++ KP + Y+ +I K I+ AE L E+ + L+P
Sbjct: 414 RRGKLDTALSFLGEM-IDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPTV 472
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
YT ++G Y G I+KA+ Y M G P TFT L+ L AG
Sbjct: 473 VTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAG 521
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 88 CRLLKADLLDTLTE--LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIA 145
C+L + D L + +R + LD L VF + +V P++ S ++ L K +
Sbjct: 151 CKLSSSSSFDLLIQHYVRSRRVLDGVL-VFKMMMTKVSLLPEVRTLSALLHGLVKFRHFG 209
Query: 146 MAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+A ELF ++ G+ PD +YT +I ++ + +A E M+A+GC + + + +LI
Sbjct: 210 LAMELFDDMINVGIRPDVYIYTGVIRSLCELKDLSRAKEMIVQMEATGCDVNIVPYNVLI 269
Query: 206 RNL 208
L
Sbjct: 270 DGL 272
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 8/151 (5%)
Query: 67 VHAMKLAKSSSKLE---EGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVW 123
+H + L +S+ + +G C L + L R+ +L+ AL V +
Sbjct: 584 IHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSV---CQDMGL 640
Query: 124 YKPDLSLYSDMILMLG--KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDK 181
DL L +L+ G K+K + L E+ GL PD +YT MI + G +
Sbjct: 641 RGVDLDLVCYGVLIDGSLKHKDRKVFLGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKE 700
Query: 182 AMETYETMKASGCTPHKLTFTILIRNLENAG 212
A ++ M GC P+++T+T +I L AG
Sbjct: 701 AFGIWDLMINEGCVPNEVTYTAVINGLCKAG 731
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LD LT + ++ A+++ N + K + + + Y+ +I + ++ A EL +
Sbjct: 758 FLDILT--KGVGDMKKAVELHNAILKGLL--ANTATYNMLIRGFCRQGRMEEASELITRM 813
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+G+ PD YT MI + + KA+E + +M G P ++ + LI AGE
Sbjct: 814 IGDGVSPDCITYTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGE 872
>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05670, mitochondrial; Flags: Precursor
gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
Length = 741
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R ELD K+ V K KP+ +Y +I +L + ++A AEE F E+ ++G+ PDT
Sbjct: 293 RFGELDKVWKLIE-VMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDT 351
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
VYT +I + + G I A + + M + TP LT+T +I G+
Sbjct: 352 VVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGD 401
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I + + A +LF E+ +GL+PD+ +TE+I Y + G + A
Sbjct: 384 PDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRV 443
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+ M +GC+P+ +T+T LI L G+
Sbjct: 444 HNHMIQAGCSPNVVTYTTLIDGLCKEGD 471
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 61/145 (42%), Gaps = 19/145 (13%)
Query: 82 GFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141
G RIC+L +A+ + +E+ RQ L PD +Y+ +I K
Sbjct: 324 GLLCRICKLAEAE--EAFSEMIRQGIL-----------------PDTVVYTTLIDGFCKR 364
Query: 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF 201
I A + F E+ + PD YT +I + Q+G + +A + + M G P +TF
Sbjct: 365 GDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTF 424
Query: 202 TILIRNLENAGEEELVAAVRRDCIQ 226
T LI AG + V IQ
Sbjct: 425 TELINGYCKAGHMKDAFRVHNHMIQ 449
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 102 LRRQNELDLALKVFNFVRKEVW---YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L ++ +LD A N + E+W +P++ Y+ ++ L K+ I A +L E + G
Sbjct: 466 LCKEGDLDSA----NELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAG 521
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
L+ DT YT ++ Y + G +DKA E + M G P +TF +L+
Sbjct: 522 LNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGF 571
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 6/135 (4%)
Query: 83 FQSRICRLLKADLLDTLTELR----RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILML 138
F C+ L+ D + T TEL + + A +V N + + P++ Y+ +I L
Sbjct: 409 FHEMFCKGLEPDSV-TFTELINGYCKAGHMKDAFRVHNHM-IQAGCSPNVVTYTTLIDGL 466
Query: 139 GKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK 198
K + A EL E+ K GL P+ Y ++ + G I++A++ +A+G
Sbjct: 467 CKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADT 526
Query: 199 LTFTILIRNLENAGE 213
+T+T L+ +GE
Sbjct: 527 VTYTTLMDAYCKSGE 541
>gi|297832318|ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297329881|gb|EFH60300.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 874
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 82/183 (44%), Gaps = 20/183 (10%)
Query: 49 NKKPMWR--SRVLSSEAIQAVHAMKLAKSSS--------KLEEGFQ--------SRICRL 90
N + WR R+ SS + ++ H + LA + + K+ E + S I +
Sbjct: 15 NPRLAWRIFKRIFSSPSEES-HGISLAATPTMACILVRAKMHEEIEELHNLILSSSIQKT 73
Query: 91 LKADLLDTLTELRRQNELDLALKVFNFVRKEV-WYKPDLSLYSDMILMLGKNKQIAMAEE 149
+ LL ++ + N +D A F FVR KP + LY+ ++ + +++
Sbjct: 74 KLSSLLSVVSIFAKSNHIDKAFPQFQFVRSRFPENKPGIYLYNVLLESCIRERRVEFVSW 133
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209
L+ ++ G+ P+T + +I +D A E ++ M GC P++ TF IL+R
Sbjct: 134 LYKDMVLCGISPETYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYC 193
Query: 210 NAG 212
AG
Sbjct: 194 KAG 196
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 129 SLYSDMILMLG--KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
S+YS ILM G K ++ A+ + +K+ G+ PD Y ++ Y VG +D A
Sbjct: 360 SIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVSPDAVTYGCLLHGYCSVGKVDAAKSLL 419
Query: 187 ETMKASGCTPHKLTFTILIRNLENAG 212
+ M + C P+ T IL+ +L N G
Sbjct: 420 QEMMRNNCLPNAYTCNILLHSLWNMG 445
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 39/83 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL YS ++ L K + A A+ LF E+ E L PD+ Y I + + G I A
Sbjct: 522 PDLITYSTLLNGLCKAGRFAEAKTLFAEMMGEKLQPDSLAYNIFIHHFCKQGKISSAFRV 581
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ M+ GC T+ LI L
Sbjct: 582 LKDMEKKGCHKSLETYNSLILGL 604
>gi|255660908|gb|ACU25623.1| pentatricopeptide repeat-containing protein [Mulguraea
asparagoides]
Length = 481
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K++ AE+ F E+K ++P YT +I Y+ V +D A+
Sbjct: 183 PDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L NA
Sbjct: 243 XEEMKGFGIKPNAITYSTLLPGLCNA 268
>gi|449464322|ref|XP_004149878.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37230-like [Cucumis sativus]
Length = 760
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K + AE+ F E+K + + P YT MI Y+ V D A+
Sbjct: 292 PDVVTYNTMINGYCRFKMMEEAEQFFTEMKGKNIAPTVISYTTMIKGYVSVSRADDALRL 351
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
+E MKA+G P+ +T++ L+ L +A
Sbjct: 352 FEEMKAAGEKPNDITYSTLLPGLCDA 377
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A+K+F + KE+ + + Y + + + + MA+ F + EG++P Y M+
Sbjct: 208 AVKIFQKM-KELGVERSVKSYDALFKEIMRRGRYMMAKRYFNAMLNEGIEPIRHTYNVML 266
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ ++ A YE MK+ G +P +T+ +I
Sbjct: 267 WGFFLSLRLETAKRFYEDMKSRGISPDVVTYNTMI 301
>gi|255660902|gb|ACU25620.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
Length = 484
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K++ AE+ F E+K ++P YT +I Y+ V +D A+
Sbjct: 183 PDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L NA
Sbjct: 243 VEEMKGFGIKPNAITYSTLLPGLCNA 268
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 38/75 (50%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ + ++ + + MA+ F ++ EG++P + MI + G ++ A +E MK
Sbjct: 118 YNALFXVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177
Query: 191 ASGCTPHKLTFTILI 205
+ +P +T+ +I
Sbjct: 178 SREISPDVVTYNTMI 192
>gi|108862162|gb|ABA95747.2| Cytochrome P450 family protein [Oryza sativa Japonica Group]
Length = 1595
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ P L Y +I LGK + LF E++K G P+ ++Y +I +AM
Sbjct: 1044 FLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCNCRSATQAM 1103
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAG-----EEELVAAVRRD 223
+ M ASGC P +TF LI L + G E L A+RR+
Sbjct: 1104 VILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRE 1148
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 104 RQNELDLALK-VFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
+Q L+ AL+ + + ++++ KP++ YS +I K AE LF ++ E L P+
Sbjct: 1340 KQGNLNGALRWLCDMIKRKC--KPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEALSPN 1397
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
YT +IG + + +A +ETM + C+P+ +T L+ L
Sbjct: 1398 VVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGL 1443
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD +Y+ +I +++ + A ++F ++ +G+ PD MI Y Q GM+ +A+
Sbjct: 1255 QPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVCPDIVSCNAMIKGYCQFGMMSEAIL 1314
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDC 224
M+ GC P + T+T +I G L A+R C
Sbjct: 1315 CMSNMRKVGCIPDEFTYTTVISGYAKQG--NLNGALRWLC 1352
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ +I K + A C++ K P+ Y+ +I Y + G D A
Sbjct: 1326 PDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGL 1385
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ M+A +P+ +T+TILI +L
Sbjct: 1386 FANMQAEALSPNVVTYTILIGSL 1408
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 45/107 (42%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ ++ +I L + AE E + L+P+ YT +I + G + A +
Sbjct: 1116 PDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDL 1175
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
M G TP +TF LI L AG+ VR + FP+
Sbjct: 1176 LVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPD 1222
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 90 LLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEE 149
+ A L+D R L A K+F F+ + PD+ + MI G + M+E
Sbjct: 1259 FVYATLIDGFI---RSENLGDARKIFEFMEHK-GVCPDIVSCNAMIK--GYCQFGMMSEA 1312
Query: 150 LFC--ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN 207
+ C ++K G PD YT +I Y + G ++ A+ M C P+ +T++ LI
Sbjct: 1313 ILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLING 1372
Query: 208 LENAGEEE 215
G+ +
Sbjct: 1373 YCKTGDTD 1380
>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ RR + + A +VF + K + PD Y+ ++ + GK+++ A E+ E++ G
Sbjct: 298 ISSCRRGSLYEEAAEVFEEM-KAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASG 356
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
P Y +I Y + G++D+AME M G P T+T L+ E G+++
Sbjct: 357 FAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAM 416
Query: 219 AV 220
V
Sbjct: 417 KV 418
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LLD + RR E LK + + P + Y+ +I ++ + A EL ++
Sbjct: 332 LLDVYGKSRRPREAMEVLKEM----EASGFAPSIVTYNSLISAYARDGLLDEAMELKSQM 387
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
K+G+ PD YT ++ + + G D AM+ +E M+ +GC P+ TF LI+ N G
Sbjct: 388 VKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGN 446
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLS--LYSDMILMLGKNKQIAMAEELF 151
D+L + L + +LAL VF FVR + LS + + +I +LGK + + A L
Sbjct: 149 DILGIIKGLVFYKKNELALCVFYFVRNREDFASILSNSVVAVIISVLGKEGRASFAASLL 208
Query: 152 CELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+L+ +G+ D YT +I Y G +A+ ++ ++ GC P +T+ +++
Sbjct: 209 HDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVIL 262
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ ++ ++ + G+N + +F E+K+ G P+ + +I Y + G D+AM
Sbjct: 464 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAI 523
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
Y M +G TP T+ ++ L G
Sbjct: 524 YRRMLDAGVTPDLSTYNAVLAALARGG 550
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 113 KVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGV 172
++ NF+ K+ + P L+ Y+ ++ M + + +E++ E+ +G+ PD + +I
Sbjct: 662 EILNFI-KDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFA 720
Query: 173 YLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYV 228
Y + G + +A + MK G P +T+ I + A + + A+ D ++Y+
Sbjct: 721 YCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASY--ASDSMFIEAI--DVVKYM 772
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ ++ +I +N ++ A +F E+K GL PD Y I Y M +A++
Sbjct: 708 KPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAID 767
Query: 185 TYETMKASGCTPHKLTFTILI 205
+ M + C P++ T+ LI
Sbjct: 768 VVKYMIKNECKPNQNTYNSLI 788
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL Y+ +I + A E+F E+K G PD Y ++ VY + +AME
Sbjct: 289 PDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEV 348
Query: 186 YETMKASGCTPHKLTFTILI 205
+ M+ASG P +T+ LI
Sbjct: 349 LKEMEASGFAPSIVTYNSLI 368
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P L ++L+ K+ + E F EL+++G PD M+ +Y + M+ K E
Sbjct: 603 EPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNE 662
Query: 185 TYETMKASGCTPHKLTFTILI 205
+K SG TP T+ L+
Sbjct: 663 ILNFIKDSGFTPSLTTYNSLM 683
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 1/124 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L+ + + D A+KVF +R +P++ ++ +I M G ++F E+K
Sbjct: 403 LSGFEKTGKDDYAMKVFEEMRV-AGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICE 461
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
PD + ++ V+ Q GM + ++ MK +G P + TF LI G +
Sbjct: 462 CVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAM 521
Query: 219 AVRR 222
A+ R
Sbjct: 522 AIYR 525
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 13/151 (8%)
Query: 83 FQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNK 142
+ S I + LLD EL+ Q V+K + KPD+ Y+ ++ K
Sbjct: 364 YNSLISAYARDGLLDEAMELKSQ-----------MVKKGI--KPDVFTYTTLLSGFEKTG 410
Query: 143 QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFT 202
+ A ++F E++ G P+ + +I ++ G + M+ +E +K C P +T+
Sbjct: 411 KDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWN 470
Query: 203 ILIRNLENAGEEELVAAVRRDCIQYVEFPER 233
L+ G + V+ V ++ + PER
Sbjct: 471 TLLAVFGQNGMDSEVSGVFKEMKRAGFVPER 501
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM-IDKAMET 185
D+ Y+ +I N + A +F +L++EG P Y ++ VY ++GM K
Sbjct: 219 DIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGL 278
Query: 186 YETMKASGCTPHKLTFTILIRN------LENAGE--EELVAA-VRRDCIQYVEFPERFLE 236
++MK+SG P T+ LI + E A E EE+ AA D + Y L
Sbjct: 279 VDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTY-----NALL 333
Query: 237 EVYQKHRKTQ 246
+VY K R+ +
Sbjct: 334 DVYGKSRRPR 343
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 125 KPDLSLYSDMILMLGK-NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+P L Y+ ++ + GK + L +K G+ PD Y +I + + ++A
Sbjct: 252 RPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAA 311
Query: 184 ETYETMKASGCTPHKLTFTILI 205
E +E MKA+G +P K+T+ L+
Sbjct: 312 EVFEEMKAAGFSPDKVTYNALL 333
>gi|357145938|ref|XP_003573820.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
chloroplastic-like [Brachypodium distachyon]
Length = 1084
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 5/131 (3%)
Query: 86 RICRLLKADLLDTLTEL----RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141
R CRL+ + T L + D AL+V + KE KPD LY+ +I K
Sbjct: 447 RFCRLIANPKMSTFNMLLSVCAHSQDFDGALQVMMLL-KEAGLKPDCKLYTTLISTCAKC 505
Query: 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF 201
++ E+F E+ G++P+ Y +I + G + KA Y M + P ++ F
Sbjct: 506 GKVDAMFEVFHEMVSAGIEPNVNTYGALIDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVF 565
Query: 202 TILIRNLENAG 212
LI +G
Sbjct: 566 NALISACGESG 576
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 45/89 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
P +S ++ ++ + ++ A ++ LK+ GL PD ++YT +I + G +D E
Sbjct: 454 NPKMSTFNMLLSVCAHSQDFDGALQVMMLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFE 513
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
+ M ++G P+ T+ LI AG+
Sbjct: 514 VFHEMVSAGIEPNVNTYGALIDGCAKAGQ 542
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 4/122 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D RR D A ++ VR + ++ + YS + K A +LF E+
Sbjct: 681 LVDVAGHARRA---DAAFEIIKDVRAKGFHV-GIMAYSSFMGACCNAKDWKKALQLFEEI 736
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
K L P + +I + K++E +K G P+++T+++L E GE
Sbjct: 737 KISRLTPTVPMMNALITSLCDGDQVQKSIEVLNELKEFGVRPNEITYSVLCVACERNGEA 796
Query: 215 EL 216
EL
Sbjct: 797 EL 798
>gi|255660884|gb|ACU25611.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
Length = 484
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K++ AE+ F E+K ++P YT +I Y+ V +D A+
Sbjct: 183 PDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L NA
Sbjct: 243 VEEMKGFGIKPNAITYSTLLPGLCNA 268
Score = 36.6 bits (83), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 38/75 (50%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ + ++ + + MA+ F ++ EG++P + MI + G ++ A +E MK
Sbjct: 118 YNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177
Query: 191 ASGCTPHKLTFTILI 205
+ +P +T+ +I
Sbjct: 178 SREISPDVVTYNTMI 192
>gi|255660870|gb|ACU25604.1| pentatricopeptide repeat-containing protein [Verbena halei]
Length = 476
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K++ AE+ F E+K ++P YT +I Y+ V +D A+
Sbjct: 175 PDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 234
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L NA
Sbjct: 235 VEEMKGFGTKPNAITYSTLLPGLCNA 260
>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ RR + + A +VF + K + PD Y+ ++ + GK+++ A E+ E++ G
Sbjct: 298 ISSCRRGSLYEEAAEVFEEM-KAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASG 356
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
P Y +I Y + G++D+AME M G P T+T L+ E G+++
Sbjct: 357 FAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAM 416
Query: 219 AV 220
V
Sbjct: 417 KV 418
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LLD + RR E LK + + P + Y+ +I ++ + A EL ++
Sbjct: 332 LLDVYGKSRRPREAMEVLKEM----EASGFAPSIVTYNSLISAYARDGLLDEAMELKSQM 387
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
K+G+ PD YT ++ + + G D AM+ +E M+ +GC P+ TF LI+ N G
Sbjct: 388 VKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGN 446
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ ++ +I +N ++ A +F E+K GL PD Y I Y M +A++
Sbjct: 708 KPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAID 767
Query: 185 TYETMKASGCTPHKLTFTILI 205
+ M +GC P++ T+ LI
Sbjct: 768 VVKYMIKNGCKPNQNTYNSLI 788
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLS--LYSDMILMLGKNKQIAMAEELF 151
D+L + L + +LAL VF FVR + LS + + +I +LGK + + A L
Sbjct: 149 DILGIIKGLVFYKKNELALCVFYFVRNREDFASILSNSVVAVIISVLGKEGRASFAASLL 208
Query: 152 CELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+L+ +G+ D YT +I Y G +A+ ++ ++ GC P +T+ +++
Sbjct: 209 HDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVIL 262
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ ++ ++ + G+N + +F E+K+ G P+ + +I Y + G D+AM
Sbjct: 464 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAI 523
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
Y M +G TP T+ ++ L G
Sbjct: 524 YRRMLDAGVTPDLSTYNAVLAALARGG 550
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 113 KVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGV 172
++ NF+ K+ + P L+ Y+ ++ M + + +E++ E+ +G+ PD + +I
Sbjct: 662 EILNFI-KDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFA 720
Query: 173 YLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYV 228
Y + G + +A + MK G P +T+ I + A + + A+ D ++Y+
Sbjct: 721 YCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASY--ASDSMFIEAI--DVVKYM 772
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL Y+ +I + A E+F E+K G PD Y ++ VY + +AME
Sbjct: 289 PDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEV 348
Query: 186 YETMKASGCTPHKLTFTILI 205
+ M+ASG P +T+ LI
Sbjct: 349 LKEMEASGFAPSIVTYNSLI 368
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P L ++L+ K+ + E F EL+++G PD M+ +Y + M+ K E
Sbjct: 603 EPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNE 662
Query: 185 TYETMKASGCTPHKLTFTILI 205
+K SG TP T+ L+
Sbjct: 663 ILNFIKDSGFTPSLTTYNSLM 683
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 1/124 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L+ + + D A+KVF +R +P++ ++ +I M G ++F E+K
Sbjct: 403 LSGFEKTGKDDYAMKVFEEMRV-AGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICE 461
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
PD + ++ V+ Q GM + ++ MK +G P + TF LI G +
Sbjct: 462 CVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAM 521
Query: 219 AVRR 222
A+ R
Sbjct: 522 AIYR 525
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 13/151 (8%)
Query: 83 FQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNK 142
+ S I + LLD EL+ Q V+K + KPD+ Y+ ++ K
Sbjct: 364 YNSLISAYARDGLLDEAMELKSQ-----------MVKKGI--KPDVFTYTTLLSGFEKTG 410
Query: 143 QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFT 202
+ A ++F E++ G P+ + +I ++ G + M+ +E +K C P +T+
Sbjct: 411 KDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWN 470
Query: 203 ILIRNLENAGEEELVAAVRRDCIQYVEFPER 233
L+ G + V+ V ++ + PER
Sbjct: 471 TLLAVFGQNGMDSEVSGVFKEMKRAGFVPER 501
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM-IDKAMET 185
D+ Y+ +I N + A +F +L++EG P Y ++ VY ++GM K
Sbjct: 219 DIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGL 278
Query: 186 YETMKASGCTPHKLTFTILIRN------LENAGE--EELVAA-VRRDCIQYVEFPERFLE 236
++MK+SG P T+ LI + E A E EE+ AA D + Y L
Sbjct: 279 VDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTY-----NALL 333
Query: 237 EVYQKHRKTQ 246
+VY K R+ +
Sbjct: 334 DVYGKSRRPR 343
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 125 KPDLSLYSDMILMLGK-NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+P L Y+ ++ + GK + L +K G+ PD Y +I + + ++A
Sbjct: 252 RPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAA 311
Query: 184 ETYETMKASGCTPHKLTFTILI 205
E +E MKA+G +P K+T+ L+
Sbjct: 312 EVFEEMKAAGFSPDKVTYNALL 333
>gi|255660898|gb|ACU25618.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
Length = 484
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K++ AE+ F E+K ++P YT +I Y+ V +D A+
Sbjct: 183 PDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L NA
Sbjct: 243 VEEMKGFGIKPNAITYSTLLPGLCNA 268
Score = 36.6 bits (83), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 38/75 (50%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ + ++ + + MA+ F ++ EG++P + MI + G ++ A +E MK
Sbjct: 118 YNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177
Query: 191 ASGCTPHKLTFTILI 205
+ +P +T+ +I
Sbjct: 178 SREISPDVVTYNTMI 192
>gi|255660894|gb|ACU25616.1| pentatricopeptide repeat-containing protein [Glandularia flava]
Length = 481
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K++ AE+ F E+K ++P YT +I Y+ V +D A+
Sbjct: 183 PDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L NA
Sbjct: 243 VEEMKGFGIKPNAITYSTLLPGLCNA 268
>gi|255660886|gb|ACU25612.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
Length = 484
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K++ AE+ F E+K ++P YT +I Y+ V +D A+
Sbjct: 183 PDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L NA
Sbjct: 243 VEEMKGFGIKPNAITYSTLLPGLCNA 268
Score = 36.6 bits (83), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 38/75 (50%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ + ++ + + MA+ F ++ EG++P + MI + G ++ A +E MK
Sbjct: 118 YNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177
Query: 191 ASGCTPHKLTFTILI 205
+ +P +T+ +I
Sbjct: 178 SREISPDVVTYNTMI 192
>gi|255660880|gb|ACU25609.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
Length = 484
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K++ AE+ F E+K ++P YT +I Y+ V +D A+
Sbjct: 183 PDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L NA
Sbjct: 243 VEEMKGFGIKPNAITYSTLLPGLCNA 268
Score = 36.6 bits (83), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 38/75 (50%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ + ++ + + MA+ F ++ EG++P + MI + G ++ A +E MK
Sbjct: 118 YNXLFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177
Query: 191 ASGCTPHKLTFTILI 205
+ +P +T+ +I
Sbjct: 178 SREISPDVVTYNTMI 192
>gi|255660890|gb|ACU25614.1| pentatricopeptide repeat-containing protein [Glandularia
microphylla]
Length = 484
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K++ AE+ F E+K ++P YT +I Y+ V +D A+
Sbjct: 183 PDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L NA
Sbjct: 243 VEEMKGFGIKPNAITYSTLLPGLCNA 268
Score = 36.6 bits (83), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 38/75 (50%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ + ++ + + MA+ F ++ EG++P + MI + G ++ A +E MK
Sbjct: 118 YNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177
Query: 191 ASGCTPHKLTFTILI 205
+ +P +T+ +I
Sbjct: 178 SREISPDVVTYNTMI 192
>gi|255660888|gb|ACU25613.1| pentatricopeptide repeat-containing protein [Verbena rigida]
Length = 481
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K++ AE+ F E+K ++P YT +I Y+ V +D A+
Sbjct: 183 PDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L NA
Sbjct: 243 VEEMKGFGIKPNAITYSTLLPGLCNA 268
Score = 36.6 bits (83), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 38/75 (50%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ + ++ + + MA+ F ++ EG++P + MI + G ++ A +E MK
Sbjct: 118 YNXLFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177
Query: 191 ASGCTPHKLTFTILI 205
+ +P +T+ +I
Sbjct: 178 SREISPDVVTYNTMI 192
>gi|356547370|ref|XP_003542086.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g65820-like [Glycine max]
Length = 628
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L LR+ + A +F +R +KP + ++ ++ K ++ A+ + ++K G
Sbjct: 208 LDALRKNGSVKEAASLFEELRYR--WKPSVKHFTSLLYGWCKEGKLMEAKHVLVQMKDAG 265
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
++PD VY ++G Y Q + A + + M+ GC P+ ++T+LI++L
Sbjct: 266 IEPDIVVYNNLLGGYAQADKMGDAYDLLKEMRRKGCEPNATSYTVLIQSL 315
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 59/116 (50%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K+ +PD+ +Y++++ + ++ A +L E++++G +P+ YT +I + +
Sbjct: 262 KDAGIEPDIVVYNNLLGGYAQADKMGDAYDLLKEMRRKGCEPNATSYTVLIQSLCKHERL 321
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFL 235
++A + M+ +GC +T++ LI G+ + + + IQ FP + +
Sbjct: 322 EEATRVFVEMQRNGCQADLVTYSTLISGFCKWGKIKRGYELLDEMIQQGHFPNQVI 377
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDLS+Y+ +I + K ++ L+ E++ GL P + MI +L+ G + +A E
Sbjct: 408 PDLSIYNTVIRLACKLGEVKEGVRLWNEMESSGLSPSIDTFVIMINGFLEQGCLVEACEY 467
Query: 186 YETMKASG--CTPHKLTFTILIRNLENAGEEELV 217
++ M G P T L+ +L A + E+
Sbjct: 468 FKEMVGRGLFAAPQYGTLKELMNSLLRAEKLEMA 501
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
E++K G PD +Y +I + ++G + + + + M++SG +P TF I+I G
Sbjct: 400 EMQKIGCAPDLSIYNTVIRLACKLGEVKEGVRLWNEMESSGLSPSIDTFVIMINGFLEQG 459
>gi|255660916|gb|ACU25627.1| pentatricopeptide repeat-containing protein [Lantana canescens]
Length = 484
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K++ AE+ F E+K ++P YT +I Y+ V +D A+
Sbjct: 183 PDVVTYNTMINGCYRVKKMDEAEKYFVEMKGRNIEPTVVSYTTLIKGYVSVDQVDDALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
E MK G P+ +T++ L+ L +AG+
Sbjct: 243 VEEMKGYGIKPNAITYSTLLPGLCDAGK 270
Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 37/75 (49%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y + ++ + + MA+ F ++ EG++P + +I + G +D A +E MK
Sbjct: 118 YDALFKVIMRRGRFMMAKRYFNKMLSEGIEPTRHTFNVLIWGFFLSGKVDTANRFFEDMK 177
Query: 191 ASGCTPHKLTFTILI 205
+ +P +T+ +I
Sbjct: 178 SREISPDVVTYNTMI 192
>gi|255660896|gb|ACU25617.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
Length = 484
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K++ AE+ F E+K ++P YT +I Y+ V +D A+
Sbjct: 183 PDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L NA
Sbjct: 243 VEEMKGFGIKPNAITYSTLLPGLCNA 268
Score = 36.6 bits (83), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 38/75 (50%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ + ++ + + MA+ F ++ EG++P + MI + G ++ A +E MK
Sbjct: 118 YNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177
Query: 191 ASGCTPHKLTFTILI 205
+ +P +T+ +I
Sbjct: 178 SREISPDVVTYNTMI 192
>gi|255660882|gb|ACU25610.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
Length = 484
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K++ AE+ F E+K ++P YT +I Y+ V +D A+
Sbjct: 183 PDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L NA
Sbjct: 243 VEEMKGFGIKPNAITYSTLLPGLCNA 268
Score = 36.6 bits (83), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 38/75 (50%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ + ++ + + MA+ F ++ EG++P + MI + G ++ A +E MK
Sbjct: 118 YNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177
Query: 191 ASGCTPHKLTFTILI 205
+ +P +T+ +I
Sbjct: 178 SREISPDVVTYNTMI 192
>gi|357521009|ref|XP_003630793.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524815|gb|AET05269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 584
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 15/151 (9%)
Query: 73 AKSSSKLEE-----------GFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKE 121
+KSSS EE G S + + L+ TL + +E A+ +FN + +E
Sbjct: 16 SKSSSNPEETCDESRCLICMGSNSCQTVISRTKLMSTLIRKGKPHE---AVTIFNSLTEE 72
Query: 122 VWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDK 181
+KP + Y+ ++ L + K+ L ++++ G+ PD+ ++ MI + G + +
Sbjct: 73 -GHKPTIITYTTLVAALTRLKRFNSIPSLLSKVEENGVKPDSILFNAMINAFSDSGKVHE 131
Query: 182 AMETYETMKASGCTPHKLTFTILIRNLENAG 212
AM+ + MK GC P TF LI+ G
Sbjct: 132 AMKIFRKMKECGCKPTTSTFNTLIKGFGIVG 162
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 9/133 (6%)
Query: 76 SSKLEEGFQSRICRLLKADLLDTLTELRRQNEL-DLALKVFNFVRKEVWYKPDLSLYSDM 134
+S EEG + I + L+ LT L+R N + L KV +E KPD L++ M
Sbjct: 67 NSLTEEGHKPTI--ITYTTLVAALTRLKRFNSIPSLLSKV-----EENGVKPDSILFNAM 119
Query: 135 ILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG- 193
I + ++ A ++F ++K+ G P T + +I + VG +AM+ E M G
Sbjct: 120 INAFSDSGKVHEAMKIFRKMKECGCKPTTSTFNTLIKGFGIVGRPHEAMKLLEMMIQDGN 179
Query: 194 CTPHKLTFTILIR 206
P++ T+ ILI+
Sbjct: 180 VKPNERTYNILIQ 192
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E KPD+ YS ++ + + EE+F ++ K ++PD + Y+ + Y++ G
Sbjct: 318 EEFGIKPDVVTYSTIMNAWSSSGLMDNCEEIFDDMVKAEIEPDIQAYSILAKGYVRAGQP 377
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
DKA +M G + + FT +I AG+
Sbjct: 378 DKAEALLNSMTKYGLQANVVIFTTIISGWCAAGK 411
Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 108 LDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
+D ++F+ V+ E+ +PD+ YS + + Q AE L + K GL + ++
Sbjct: 342 MDNCEEIFDDMVKAEI--EPDIQAYSILAKGYVRAGQPDKAEALLNSMTKYGLQANVVIF 399
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKL-TFTILI 205
T +I + G +D A+ YE M G TP L T+ LI
Sbjct: 400 TTIISGWCAAGKMDCALRLYEKMNEMG-TPLNLKTYETLI 438
>gi|302822703|ref|XP_002993008.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
gi|300139208|gb|EFJ05954.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
Length = 431
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP+ ++ +I LG+ K + A ++ E++ GL PD YT MI + + G + KA E
Sbjct: 256 KPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFE 315
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ M+ +GC+ + +T+ +LI L AG
Sbjct: 316 MFGDMEKAGCSANVVTYNLLIDALVKAG 343
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP+ Y +I L K + +A + ++ K GL+PDT +Y ++ + MID+A +
Sbjct: 46 KPNAYTYKCVIQSLVKAGNVVLAMDFLDKMIKTGLEPDTLLYNVVLDGLGKANMIDEACK 105
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ +MK+ GC T+ ILIR+L +E
Sbjct: 106 LFASMKSMGCPADDYTYAILIRSLGRCKRDE 136
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L + N +D A K+F + K + D Y+ +I LG+ K+ A LF E+++ G
Sbjct: 91 LDGLGKANMIDEACKLFASM-KSMGCPADDYTYAILIRSLGRCKRDEEATLLFDEMEERG 149
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
P YT +I +Y + G I+ AM + M P T LI + G EL
Sbjct: 150 CTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELAC 209
Query: 219 AV 220
+
Sbjct: 210 EI 211
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+T + R +LA ++F ++K +S ++ M+ GK ++ +A + E++ G
Sbjct: 196 ITAVSRTGRTELACEIFERMKKSGVAVNTVS-FNAMLDCCGKAGKVGLAYQFMDEMEARG 254
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ P++ + +I + +A + + M+++G TP T+T +I AG
Sbjct: 255 IKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGN 309
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI K + A E+F +++K G + Y +I ++ G A +
Sbjct: 292 PDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQDARDI 351
Query: 186 YETMKASGCTPHKLTFTIL 204
Y MK G P +T T+L
Sbjct: 352 YFDMKKKGILPDAITATVL 370
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD + +I + + + +A E+F +KK G+ +T + M+ + G + A +
Sbjct: 187 PDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQF 246
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
+ M+A G P+ +TF LI L A
Sbjct: 247 MDEMEARGIKPNSITFNTLINCLGRA 272
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD LY+ ++ LGK I A +LF +K G D Y +I + ++A
Sbjct: 81 EPDTLLYNVVLDGLGKANMIDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEEATL 140
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ M+ GCTP +T +I AG E
Sbjct: 141 LFDEMEERGCTPSAPAYTNVIDIYCKAGRIE 171
>gi|255660892|gb|ACU25615.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
Length = 481
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K++ AE+ F E+K ++P YT +I Y+ V +D A+
Sbjct: 183 PDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L NA
Sbjct: 243 VEEMKGFGIKPNAITYSTLLPGLCNA 268
>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
Length = 497
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ YS +I L ++ ++ A L +K G PD +Y+ +I + G +D+A +
Sbjct: 285 KPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFD 344
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
YE M GC +T++ LI L AG
Sbjct: 345 LYEVMTGDGCDADVVTYSTLIDGLCKAG 372
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R N LD A ++ +V+ PD+ LYS +I L K ++ A +L+ + +G D
Sbjct: 298 LCRSNRLDEACRLLLYVKSR-GCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDA 356
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
D Y+ +I + G +D+A M G P +T+ LI+ L
Sbjct: 357 DVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGL 403
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 4/153 (2%)
Query: 71 KLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSL 130
KL ++ + +E R ++ ++L +T L R +++ AL+ F + + P++
Sbjct: 60 KLERAMALFQEMLDRRSHDVISFNIL--VTGLCRAGKIETALEFFR--KMDDRCSPNVIT 115
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
YS +I L K +++ A EL +K G PD YT ++ + + A E M
Sbjct: 116 YSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREML 175
Query: 191 ASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
+GC P+ +T+ L+ L A A+ RD
Sbjct: 176 DAGCVPNLVTYNSLLHGLCRARRVSDALALMRD 208
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 76 SSKLEEG------FQSRICR---LLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKP 126
S++L+E +SR C +L + L+D L + ++D A ++ + +
Sbjct: 301 SNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLC---KAGKVDEAFDLYEVMTGD-GCDA 356
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ YS +I L K ++ A L + + G P T Y +I + +D+A+E
Sbjct: 357 DVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELV 416
Query: 187 ETMKASGCTPHKLTFTILIRNL 208
E M+ S C P +T+ ILI +
Sbjct: 417 EEMERSNCAPSAVTYNILIHGM 438
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 47/108 (43%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
PD+ Y+ ++ L K ++A A E+ E+ G P+ Y ++ + + A+
Sbjct: 145 SPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALA 204
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
M GCTP+ +T+ LI L G + A+ D I P+
Sbjct: 205 LMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPD 252
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL +Y+ +I L K Q+ + L G+ PD Y+ +I + +D+A
Sbjct: 251 PDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRL 310
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+K+ GC P + ++ LI L AG+
Sbjct: 311 LLYVKSRGCPPDVILYSTLIDGLCKAGK 338
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+L Y+ ++ L + ++++ A L ++ G P+ Y +I +VG + A
Sbjct: 181 PNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAM 240
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE-EELVAAVRR 222
M G TP + + +LI L A + +E +A +RR
Sbjct: 241 LADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRR 278
>gi|115452873|ref|NP_001050037.1| Os03g0336000 [Oryza sativa Japonica Group]
gi|108708021|gb|ABF95816.1| expressed protein [Oryza sativa Japonica Group]
gi|113548508|dbj|BAF11951.1| Os03g0336000 [Oryza sativa Japonica Group]
gi|125543773|gb|EAY89912.1| hypothetical protein OsI_11461 [Oryza sativa Indica Group]
gi|215712300|dbj|BAG94427.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 545
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 1/126 (0%)
Query: 90 LLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEE 149
L +D D L+ L + D A+ +F +R PD Y+ + L + A+E
Sbjct: 126 LTVSDYNDILSALAMAGDHDSAVALFRALRPN-GVTPDAQSYATAVQCLCRKGAPDEAKE 184
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209
E+ G P ++ ++G + G + +AME ++TM+A GC P T+ LI L
Sbjct: 185 ALDEMVARGFRPTVATFSAVVGCLCKRGRVTRAMEVFDTMRAVGCEPTIRTYNSLIGGLC 244
Query: 210 NAGEEE 215
G E
Sbjct: 245 YVGRLE 250
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++P ++ +S ++ L K ++ A E+F ++ G +P R Y +IG VG +++A+
Sbjct: 194 FRPTVATFSAVVGCLCKRGRVTRAMEVFDTMRAVGCEPTIRTYNSLIGGLCYVGRLEEAL 253
Query: 184 ETYETMKASG-CTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERF 234
+ +K S TP TFTI++ G + + D ++ P F
Sbjct: 254 DLLNKLKESPKQTPDIYTFTIVLDGFCKVGRTDEATPIFHDAVRNGLSPTIF 305
>gi|297800058|ref|XP_002867913.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297313749|gb|EFH44172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 724
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 111 ALKVF-NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
A ++F VR ++ YKP++ Y+ MI K ++ AE LF +K++GL P+ YT +
Sbjct: 364 AFRLFLKLVRSDI-YKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTL 422
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
I + + G D+A E M G P+ T+ +I +L
Sbjct: 423 INGHCKAGNFDRAYELMNLMDDEGFRPNIYTYNAVIDSL 461
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+Q+++ AL F + K ++ D+ L + +I + K++ +E LF + GL P
Sbjct: 498 KQSDIKQALAFFCRMNK-TGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLVPTK 556
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
YT MI Y + G D A++ + MK GC P T+ LI L
Sbjct: 557 ETYTSMISGYCKEGDFDLALKYFHNMKRHGCVPDSFTYGSLISGL 601
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGL-DPDTRVYTEMIGVYLQVGMIDKA 182
+KP++ ++ +I L K A LF +L + + P+ YT MIG Y + +++A
Sbjct: 341 WKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNRA 400
Query: 183 METYETMKASGCTPHKLTFTILIRNLENAGE 213
+ MK G P+ T+T LI AG
Sbjct: 401 EMLFSRMKEQGLFPNVNTYTTLINGHCKAGN 431
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P Y+ MI K +A + F +K+ G PD+ Y +I + M+D+A +
Sbjct: 554 PTKETYTSMISGYCKEGDFDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKL 613
Query: 186 YETMKASGCTPHKLT 200
YE M G +P ++T
Sbjct: 614 YEAMIDRGLSPPEVT 628
>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 584
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 83/196 (42%), Gaps = 23/196 (11%)
Query: 31 PSGKKIQALTVTC---GLRDANKKPMWRSRVLSSEAIQA---------VHAMKLAKSS-- 76
P+ + + V+C L DANK + +S+E Q VH MKL S
Sbjct: 22 PTSNSLHSTIVSCIRPELNDANKVRNPQKVRVSAETRQTHVLSFDFKEVHLMKLLNRSCR 81
Query: 77 -SKLEEGFQSRICRLLKADLLDTL--TELRR----QNELDLALKVFNFVRKEVWYKPDLS 129
K E C + K D + T+L + + A +V + E + KPD+
Sbjct: 82 AGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEIL--ERYGKPDVF 139
Query: 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM 189
Y+ +I K Q+ A + +K G PD Y MIG + G +D A+E +E +
Sbjct: 140 AYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEEL 199
Query: 190 KASGCTPHKLTFTILI 205
C P +T+TILI
Sbjct: 200 LKDNCEPTVITYTILI 215
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
+ +LDLAL++F + K+ +P + Y+ +I + I +A +L E+ +GL+PDT
Sbjct: 186 RGKLDLALEIFEELLKDNC-EPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTL 244
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
Y +I + M+DKA E ++ + GC P +T+ IL+R L + G+
Sbjct: 245 TYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGK 293
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 6/128 (4%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R + D AL+VF + EV P++S Y+ + L + A E+ +L +G+DP
Sbjct: 393 LCRTGKADQALEVFEKL-DEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDP 451
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL-----ENAGEEEL 216
D Y +I + GM+D+A+E M++ P+ +++ I++ L N E L
Sbjct: 452 DEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVL 511
Query: 217 VAAVRRDC 224
A + C
Sbjct: 512 AAMTEKGC 519
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ N+L+ A +V + ++ + PD+ Y+ MI ++ +A E+F EL K+ +P
Sbjct: 150 KANQLENANRVLDRMKSR-GFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTV 208
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
YT +I + G ID AM+ + M + G P LT+ +IR +
Sbjct: 209 ITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGM 253
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 48/94 (51%)
Query: 122 VWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDK 181
+ KP++ +S +I L ++ ++ A L +K++GL PD Y +I + + G +D
Sbjct: 307 IGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDL 366
Query: 182 AMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
A E E M + GC P + + ++ L G+ +
Sbjct: 367 ATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKAD 400
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 116 NFVR--KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY 173
N +R KE KPD Y +I + ++ +A E + +G PD Y ++
Sbjct: 334 NLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGL 393
Query: 174 LQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ G D+A+E +E + GC P+ ++ L L ++G+
Sbjct: 394 CRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGD 433
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y PD+ L + +I ++ I A + L++ G PD Y +I +++ ++ A
Sbjct: 100 YTPDVILCTKLIKGFFNSRNIGKATRVMEILERYG-KPDVFAYNALISGFIKANQLENAN 158
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
+ MK+ G P +T+ I+I + + G+ +L
Sbjct: 159 RVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDL 191
>gi|255660866|gb|ACU25602.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
Length = 484
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K++ AE+ F E+K ++P YT +I Y+ V +D A+
Sbjct: 183 PDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L NA
Sbjct: 243 VEEMKGFGIKPNTITYSTLLPGLCNA 268
>gi|224107773|ref|XP_002333469.1| predicted protein [Populus trichocarpa]
gi|222836989|gb|EEE75382.1| predicted protein [Populus trichocarpa]
Length = 1048
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 64/117 (54%)
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
LA + FN+V+ + + Y+ M+ G+ ++ ++ + L E++K + D + +T +
Sbjct: 186 LAYRFFNWVKTKDGFCHTTKTYNTMLYTAGEAREFSVVDVLLEEMEKYSCERDIKTWTIL 245
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
I Y + +I KA+ +E M+ SGC P + + + +L +AG+ E+ + ++ +Q
Sbjct: 246 IRQYGKAKLIGKALLVHEKMRKSGCEPDVEVYEVTLHSLCDAGKGEIALEIYKEMVQ 302
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 50/96 (52%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K+V P + +Y+ +I+ + K + A E+F +K+EG +P Y+ +I Y+ +
Sbjct: 899 KQVGINPTVHVYTSLIVHFFREKLASKALEIFESMKQEGCEPTIVTYSALIRGYMDTENV 958
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+A + ++K G P T+++ + L AG+ E
Sbjct: 959 IEAWNVFHSLKTKGPAPDFKTYSMFLSCLCRAGKSE 994
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG--LDPDTRVY 166
+ AL F +V K+ + Y+ + + G+ K LF E+++ G + PDT +
Sbjct: 677 NAALHFFAWVGKQNGFCQTTETYNMAMKVSGRGKDFKHMRSLFYEMRRRGFLIPPDT--W 734
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
MI Y + G+ + A++ + MKASGC P+ T+ LI
Sbjct: 735 AIMIMQYGRTGLTEIALKIFGEMKASGCNPNDSTYKYLI 773
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+NEL AL +F + KE + P S Y++++ L ++ + EL+ E+ + G++ D+
Sbjct: 425 RRNELSKALDLFQSM-KEFGHLPTTSTYTELMQHLFRSNEYQKCCELYDEMLERGVEIDS 483
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
++ +++ I +A E +ETM+ G P +++I I+ L
Sbjct: 484 VAVMAIVAGHVRQDHISEAWEVFETMEDKGIKPTWKSYSIFIKEL 528
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEEL--FCELKKEGL 159
L R L+ AL + + V E K L Y+ L+ G ++ + E L +K+ G+
Sbjct: 847 LCRAGMLEEALSLVDQVSTE---KTTLDRYTHASLVHGLLQKGRLEEALAKVDSMKQVGI 903
Query: 160 DPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN 207
+P VYT +I + + + KA+E +E+MK GC P +T++ LIR
Sbjct: 904 NPTVHVYTSLIVHFFREKLASKALEIFESMKQEGCEPTIVTYSALIRG 951
Score = 43.5 bits (101), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ ++ +I GK K I A + +++K G +PD VY + G + A+E Y
Sbjct: 238 DIKTWTILIRQYGKAKLIGKALLVHEKMRKSGCEPDVEVYEVTLHSLCDAGKGEIALEIY 297
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
+ M P+ + +L+ L +G+ V +V D I+ + PE
Sbjct: 298 KEMVQREMEPNLSLYKMLLNCLAKSGDVSAVQSVADDMIRVSQIPE 343
>gi|125586172|gb|EAZ26836.1| hypothetical protein OsJ_10752 [Oryza sativa Japonica Group]
Length = 523
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 1/126 (0%)
Query: 90 LLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEE 149
L +D D L+ L + D A+ +F +R PD Y+ + L + A+E
Sbjct: 126 LTVSDYNDILSALAMAGDHDSAVALFRALRPN-GVTPDAQSYATAVQCLCRKGAPDEAKE 184
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209
E+ G P ++ ++G + G + +AME ++TM+A GC P T+ LI L
Sbjct: 185 ALDEMVARGFRPTVATFSAVVGCLCKRGRVTRAMEVFDTMRAVGCEPTIRTYNSLIGGLC 244
Query: 210 NAGEEE 215
G E
Sbjct: 245 YVGRLE 250
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++P ++ +S ++ L K ++ A E+F ++ G +P R Y +IG VG +++A+
Sbjct: 194 FRPTVATFSAVVGCLCKRGRVTRAMEVFDTMRAVGCEPTIRTYNSLIGGLCYVGRLEEAL 253
Query: 184 ETYETMKASG-CTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERF 234
+ +K S TP TFTI++ G + + D ++ P F
Sbjct: 254 DLLNKLKESPKQTPDIYTFTIVLDGFCKVGRTDEATPIFHDAVRNGLSPTIF 305
>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Glycine max]
Length = 746
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 59/109 (54%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ D A ++F + +E +P++ + ++ L K+ ++ A E F E+K +GL +
Sbjct: 405 KAGNFDRAHELFRQMNEE-GVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNA 463
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
YT +I + V I++AM+ +E M +SGC+P + + LI L AG
Sbjct: 464 ATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAG 512
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E KPD Y+ +I LGK A A ++ ++ KEGL P Y +I Y +
Sbjct: 560 EETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNV 619
Query: 180 DKAMETYETM-KASGCTPHKLTFTILIRNL 208
D+ M+ + M S P+ + + ILI L
Sbjct: 620 DEGMKIFGEMCSTSKVPPNTVIYNILIDAL 649
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 9/124 (7%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKE-----VWYKPDLSLYSDMILMLGKNKQIAMAEE 149
L++ L + RR +D AL+VF+ +R + V +PD+ L++ +I L K +
Sbjct: 322 LVNHLCKARR---IDEALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLS 378
Query: 150 LFCELKKEGLD-PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
L E+K ++ P+T Y +I + + G D+A E + M G P+ +T L+ L
Sbjct: 379 LLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGL 438
Query: 209 ENAG 212
G
Sbjct: 439 CKHG 442
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 49/111 (44%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
+ +D +K+F + P+ +Y+ +I L +N + A L ++K + + P+T
Sbjct: 616 KKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNTT 675
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
Y ++ M+ KA E + M C P +T +L L GE E
Sbjct: 676 TYNAILKGVRDKKMLHKAFELMDRMVEEACRPDYITMEVLTEWLSAVGEIE 726
>gi|255660864|gb|ACU25601.1| pentatricopeptide repeat-containing protein [Verbena perennis]
Length = 484
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K++ AE+ F E+K ++P YT +I Y+ V +D A+
Sbjct: 183 PDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L NA
Sbjct: 243 VEEMKGFGIKPNAITYSTLLPGLCNA 268
>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61400-like [Vitis vinifera]
Length = 665
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 5/117 (4%)
Query: 104 RQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
RQ + A ++F+ + K+++ P + +Y+ +I L +I+ AE +F ++ G+ P+
Sbjct: 205 RQGDFLKAFRLFDEMIEKKIF--PTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPN 262
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAA 219
Y M+ Y ++ + KA+E Y+ M G P+ +TF ILI L +E+V+A
Sbjct: 263 LYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGL--CKTDEMVSA 317
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ YS +I L ++ A+ L E+KK+G P+ Y +I Y + G ++KA+E
Sbjct: 366 PDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEV 425
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE---------EELVAAVRRDCIQYV-----EFP 231
M G P+ +TF+ LI AG+ E ++ + D + Y F
Sbjct: 426 CSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFK 485
Query: 232 ERFLEEVYQKHRKTQ 246
+ +E ++ H++ Q
Sbjct: 486 DGNTKEAFRLHKEMQ 500
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ +S +I K ++ A L+ E+ +GL PD YT +I + + G +A
Sbjct: 435 EPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFR 494
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
++ M+ +G P+ T + LI L G
Sbjct: 495 LHKEMQEAGLHPNVFTLSCLIDGLCKDG 522
>gi|255660920|gb|ACU25629.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
Length = 484
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K++ AE+ F E+K ++P YT +I Y+ V +D A+
Sbjct: 183 PDVITYNTMINGYYRVKKMDEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L NA
Sbjct: 243 VEEMKGYGIKPNAITYSTLLPGLCNA 268
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+ +A + FN + E +P ++ MI + ++ A F ++K + PD
Sbjct: 127 RRGRFMMAKRYFNKMLSE-GIEPTRHXFNVMIWGFFLSGKVETANRFFEDMKSREISPDV 185
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
Y MI Y +V +D+A + + MK P +T+T LI+
Sbjct: 186 ITYNTMINGYYRVKKMDEAEKYFVEMKGRNIEPTVVTYTTLIK 228
>gi|302761054|ref|XP_002963949.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
gi|300167678|gb|EFJ34282.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
Length = 1365
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD Y+ +I N +++ A +F E++++G DPD Y MI VY + G ++ A
Sbjct: 193 RPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAASS 252
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
+ M+ G TP +T+ ++ G E V +R
Sbjct: 253 IFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIR 289
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE + P + ++ ++ + + AEEL ++KK GL+ D +Y MI +Y ++G
Sbjct: 778 KEAGFSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLELDIDIYNHMISLYSKLGSY 837
Query: 180 DKAMETYETMKASGCTPHKLTFTILI 205
A ++ M+ GC+P TF LI
Sbjct: 838 RNAALVFKGMQEIGCSPDATTFNTLI 863
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E+ PD + ++ +I++ +N+ + A+ L E+ K G P+ YT +I Y ++
Sbjct: 848 QEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAY 907
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRRD 223
+ A ++++ +GC P + ++I AGE EE++ ++ D
Sbjct: 908 EDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHRKIEEIIEQMKVD 955
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R ++ A +F + +E + PD Y+ ++ ++ +I E + ++ D
Sbjct: 243 RAGRVEAASSIFR-IMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDE 301
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
Y MI +Y + GM KA E Y MK G P +TFT+LI L AG AA+ D
Sbjct: 302 ITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFED 361
Query: 224 CIQ 226
++
Sbjct: 362 MLK 364
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 11/127 (8%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL+++ + WY P+ + + M+ +LG+ Q +A+ELF + + + +VY ++
Sbjct: 74 ALELYECLNVARWYAPNPRMLAVMLSVLGRANQPGLAQELF-DRAESSIGNCVQVYNSLM 132
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE----------LVAAV 220
VY + G + + M+ GC P +TF I+I+ G +E A +
Sbjct: 133 SVYARHGDWNSVQQLLCRMQDRGCRPDLVTFNIVIKARTRGGMQEGLASSLLQDVYAAGL 192
Query: 221 RRDCIQY 227
R D I Y
Sbjct: 193 RPDTITY 199
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 95 LLDTLTELRRQNELDLALKVF-NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
L+DTL + NE A +F + ++ +V +P L +S MI K AE +
Sbjct: 342 LIDTLGKAGFVNE---AAAMFEDMLKSQV--RPTLQAFSAMICAYAKADMFTDAEHTYSC 396
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
+ + G+ PD Y+ M+ V+ + GM +K + Y+ M SG P + I++R
Sbjct: 397 MLRAGVRPDLLAYSVMLDVFFKAGMPEKCIILYKAMVGSGLKPELSVYAIMVR 449
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ MI M GK AEEL+ ++K+EG PD+ +T +I + G +++A +E M
Sbjct: 304 YNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDML 363
Query: 191 ASGCTPHKLTFTILI---------RNLENAGEEELVAAVRRDCIQY 227
S P F+ +I + E+ L A VR D + Y
Sbjct: 364 KSQVRPTLQAFSAMICAYAKADMFTDAEHTYSCMLRAGVRPDLLAY 409
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++S Y+ +I G+ + AE +F + + G PD Y MI VY + G K E
Sbjct: 889 PNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHRKIEEI 948
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
E MK G P T +L+ + G
Sbjct: 949 IEQMKVDGFEPSLTTIHMLMDSYGKGG 975
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD ++ +I LGK + A +F ++ K + P + ++ MI Y + M A T
Sbjct: 334 PDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFTDAEHT 393
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
Y M +G P L +++++ AG E
Sbjct: 394 YSCMLRAGVRPDLLAYSVMLDVFFKAGMPE 423
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D +++ +I GK K AE +F +L++ G +T Y+ ++ Y + G ++A
Sbjct: 645 DSAMHVAIIASYGKLKLWQNAEIVFRDLQQHGFAGNTSAYSALLSAYAETGNFERATRAL 704
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGE 213
+ M A+G P+ ++ AG+
Sbjct: 705 DNMVAAGLQPNATCANYVLEAFGRAGK 731
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E KPD + Y+ MI + K + EE+ ++K +G +P ++ Y + G
Sbjct: 919 ETGCKPDATAYNVMINVYRKAGEHRKIEEIIEQMKVDGFEPSLTTIHMLMDSYGKGGATG 978
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLEN 210
KA E ET+ G +P + +T +I + N
Sbjct: 979 KAEEVLETLPEIGMSPDAIHYTSIINSHLN 1008
>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 523
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I K+K++ +LFCE+ +GL D Y +I Y Q G ++ A +
Sbjct: 322 PDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKV 381
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ M G +P +T+ IL+ L N G+ E
Sbjct: 382 FNRMVDCGVSPDIVTYNILLDCLCNNGKIE 411
>gi|255660918|gb|ACU25628.1| pentatricopeptide repeat-containing protein [Xeroaloysia
ovatifolia]
Length = 484
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K++ AE+ F E+K ++P YT +I Y+ V +D A+
Sbjct: 183 PDVITYNTMINGYYRVKKMDEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L NA
Sbjct: 243 VEEMKGYGIKPNAITYSTLLPGLCNA 268
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
Query: 97 DTLTE-LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELK 155
DTL + + R+ +A + FN + E +P ++ MI + ++ A F ++K
Sbjct: 119 DTLFKVILRRGRFMMAKRYFNKMLSE-GIEPTRHTFNVMIWGFFLSGKVETANRFFDDMK 177
Query: 156 KEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
+ PD Y MI Y +V +D+A + + MK P +T+T LI+
Sbjct: 178 SREISPDVITYNTMINGYYRVKKMDEAEKYFVEMKGRNIEPTVVTYTTLIK 228
>gi|255660874|gb|ACU25606.1| pentatricopeptide repeat-containing protein [Verbena canescens]
Length = 484
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K++ AE+ F E+K ++P YT +I Y+ V +D A+
Sbjct: 183 PDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L NA
Sbjct: 243 VEEMKGFGIKPNAITYSTLLPGLCNA 268
>gi|255660868|gb|ACU25603.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
Length = 484
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K++ AE+ F E+K ++P YT +I Y+ V +D A+
Sbjct: 183 PDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L NA
Sbjct: 243 VEEMKGFGIKPNAITYSTLLPGLCNA 268
>gi|302769103|ref|XP_002967971.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
gi|300164709|gb|EFJ31318.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
Length = 1354
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD Y+ +I N +++ A +F E++++G DPD Y MI VY + G ++ A
Sbjct: 182 RPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAASS 241
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
+ M+ G TP +T+ ++ G E V +R
Sbjct: 242 IFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIR 278
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R L+ A ++ +R E + P + ++ ++ + + AEEL ++KK GL+ D
Sbjct: 752 RNGNLEEARSMYRQMR-EAGFSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLELDM 810
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+Y MI +Y ++G KA ++ M+ GC+P TF LI
Sbjct: 811 DIYNHMISLYSKLGSYRKAALVFKGMQEIGCSPDATTFNTLI 852
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E+ PD + ++ +I++ +N+ + A+ L E+ K G P+ YT +I Y ++
Sbjct: 837 QEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAY 896
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRRD 223
+ A ++++ +GC P + ++I AGE EE++ ++ D
Sbjct: 897 EDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHRKIEEVIEQMKAD 944
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R ++ A +F + +E + PD Y+ ++ ++ +I E + ++ D
Sbjct: 232 RAGRVEAASSIFR-IMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDE 290
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
Y MI +Y + GM KA E Y MK G P +TFT+LI L AG AA+ D
Sbjct: 291 ITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFED 350
Query: 224 CIQ 226
++
Sbjct: 351 MLK 353
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 11/127 (8%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL+++ + WY P+ + + M+ +LG+ Q +A+ELF + + + +VY ++
Sbjct: 63 ALELYECLNVARWYAPNPRMLAVMLSVLGRANQPGLAQELF-DRAESSIGNCVQVYNSLM 121
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE----------LVAAV 220
VY + G + + M+ GC P +TF I+I+ G +E A +
Sbjct: 122 SVYARHGDWNSVQQLLCRMQDRGCRPDLVTFNIVIKARTRGGMQEGLASSLLQDVYAAGL 181
Query: 221 RRDCIQY 227
R D I Y
Sbjct: 182 RPDTITY 188
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++S Y+ +I G+ + AE +F + + G PD Y MI VY + G K E
Sbjct: 878 PNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHRKIEEV 937
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
E MKA G P T +L+ + G
Sbjct: 938 IEQMKADGFEPSLTTIHMLMDSYGKGG 964
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ MI M GK AEEL+ ++K+EG PD+ +T +I + G +++A +E M
Sbjct: 293 YNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDML 352
Query: 191 ASGCTPHKLTFTILI---------RNLENAGEEELVAAVRRDCIQY 227
S P F+ +I + E+ L A VR D + Y
Sbjct: 353 KSQVRPTLQAFSAMICAYAKADMFSDAEHTYSCMLRAGVRPDLLAY 398
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD ++ +I LGK + A +F ++ K + P + ++ MI Y + M A T
Sbjct: 323 PDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFSDAEHT 382
Query: 186 YETMKASGCTPHKLTFTILI 205
Y M +G P L +++++
Sbjct: 383 YSCMLRAGVRPDLLAYSVML 402
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D +++ +I GK K AE +F +L++ G +T Y+ ++ Y + G ++A
Sbjct: 634 DSAMHVAIIASYGKLKLWQNAEIVFRDLQRHGFAGNTSAYSALLSAYAETGNFERATRAL 693
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGE 213
+ M A+G P+ ++ AG+
Sbjct: 694 DNMVAAGLQPNAACANYVLEAFGRAGK 720
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E KPD + Y+ MI + K + EE+ ++K +G +P ++ Y + G
Sbjct: 908 ETGCKPDATAYNVMINVYRKAGEHRKIEEVIEQMKADGFEPSLTTIHMLMDSYGKGGATG 967
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLEN 210
KA E ET+ G +P + +T +I + N
Sbjct: 968 KAEEVLETLPEIGMSPDAIHYTSIINSHLN 997
>gi|255660862|gb|ACU25600.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
Length = 484
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K++ AE+ F E+K ++P YT +I Y+ V +D A+
Sbjct: 183 PDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L NA
Sbjct: 243 VEEMKGFGIKPNAITYSTLLPGLCNA 268
>gi|242095042|ref|XP_002438011.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
gi|241916234|gb|EER89378.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
Length = 1443
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ LDLA+ +++ +R V PD Y+ MI LGK +IA A ++ ++ GL P
Sbjct: 410 KMGRLDLAVGLYDEMRA-VGCTPDAVTYTVMIDSLGKMDKIAEAGKVLEDMADAGLKPTL 468
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ +I Y + G A +T++ M ASG P +L + +++ +GE E
Sbjct: 469 VAFSALICAYAKGGRRADAEKTFDCMIASGVKPDRLAYLVMLDVFARSGETE 520
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E + PD Y+ ++ K + E EL K G + Y MI +Y ++G +D
Sbjct: 356 EKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNEITYNTMIHMYGKMGRLD 415
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNL 208
A+ Y+ M+A GCTP +T+T++I +L
Sbjct: 416 LAVGLYDEMRAVGCTPDAVTYTVMIDSL 443
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 89 RLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAE 148
++ K+ +L L + ++ +K++N + K Y P++ LY M +L + + E
Sbjct: 847 KISKSTVLLMLDAFAKAGDVFEVMKIYNGM-KAAGYLPNMHLYRSMTSLLCHHNRFRDVE 905
Query: 149 ELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ E++ G PD ++ ++ +Y G D+ + Y+++ +G P + T+ LI
Sbjct: 906 LMIAEMEGAGFKPDLSIFNSLLNMYTAAGNFDRTTQVYQSILEAGLEPDEDTYNTLI 962
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 137 MLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP 196
+LG+ +Q ++AEE+F EG +V+ M+GVY + G D A + +TM G P
Sbjct: 197 VLGRARQDSIAEEVFLRFAGEG--ATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDP 254
Query: 197 HKLTFTILIRNLENAG 212
++F LI +G
Sbjct: 255 DLVSFNTLINARSKSG 270
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+K + Y+ MI M GK ++ +A L+ E++ G PD YT MI ++ I +A
Sbjct: 394 FKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAG 453
Query: 184 ETYETMKASGCTPHKLTFTILI 205
+ E M +G P + F+ LI
Sbjct: 454 KVLEDMADAGLKPTLVAFSALI 475
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 126 PDLSLYSDMILMLGKNKQIA--MAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
PDL ++ +I K+ +A +A +L E+++ GL PD Y +I Q ++ A+
Sbjct: 254 PDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAV 313
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+E M AS C P T+ ++ G+ E
Sbjct: 314 TVFEEMIASECRPDLWTYNAMVSVHGRCGKAE 345
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP L +S +I K + A AE+ F + G+ PD Y M+ V+ + G +K +
Sbjct: 465 KPTLVAFSALICAYAKGGRRADAEKTFDCMIASGVKPDRLAYLVMLDVFARSGETEKMLR 524
Query: 185 TYETMKASGCTPHKLTFTILI 205
Y TM P + +L+
Sbjct: 525 LYRTMMNDNYRPDDDMYQVLL 545
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E +PD Y+ +I+M ++ + L E+ K GL P + Y ++ + + +
Sbjct: 948 EAGLEPDEDTYNTLIVMYCRSLRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELRE 1007
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRRDCIQ 226
+A + +E M++ ++ + ++++ NAG E L+A ++ D I+
Sbjct: 1008 QADQLFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIE 1057
>gi|42566234|ref|NP_192066.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75161629|sp|Q8VZE4.1|PP299_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g01570
gi|18086402|gb|AAL57659.1| AT4g01570/T15B16_21 [Arabidopsis thaliana]
gi|24797024|gb|AAN64524.1| At4g01570/T15B16_21 [Arabidopsis thaliana]
gi|332656643|gb|AEE82043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 805
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + DLA V + + K+ Y D+ +Y+ +I LGK ++ A +LF +K G++P
Sbjct: 675 LGKMGRADLASAVLDRLTKQGGYL-DIVMYNTLINALGKATRLDEATQLFDHMKSNGINP 733
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTIL 204
D Y MI V + G + +A + + M +GC P+ +T TIL
Sbjct: 734 DVVSYNTMIEVNSKAGKLKEAYKYLKAMLDAGCLPNHVTDTIL 776
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 45/87 (51%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D++ Y+ +I LGK + +A + L K+G D +Y +I + +D+A + +
Sbjct: 664 DIATYNVIIQGLGKMGRADLASAVLDRLTKQGGYLDIVMYNTLINALGKATRLDEATQLF 723
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGE 213
+ MK++G P +++ +I AG+
Sbjct: 724 DHMKSNGINPDVVSYNTMIEVNSKAGK 750
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
Query: 106 NELDLALKVFNFV--RKEVW---YKPDLSLYSDMILML---GKNKQIAMAEELFCELKKE 157
+LD AL +F + R V+ + PD+ Y+ +I +L GK K + + ELK
Sbjct: 262 GDLDAALSLFKEMKERSSVYGSSFGPDICTYNSLIHVLCLFGKAKDALIVWD---ELKVS 318
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
G +PD Y +I + +D AM Y M+ +G P + + L+
Sbjct: 319 GHEPDNSTYRILIQGCCKSYRMDDAMRIYGEMQYNGFVPDTIVYNCLL 366
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++PD S Y +I K+ ++ A ++ E++ G PDT VY ++ L+ + +A
Sbjct: 320 HEPDNSTYRILIQGCCKSYRMDDAMRIYGEMQYNGFVPDTIVYNCLLDGTLKARKVTEAC 379
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ +E M G T+ ILI L G E
Sbjct: 380 QLFEKMVQEGVRASCWTYNILIDGLFRNGRAE 411
>gi|302820365|ref|XP_002991850.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
gi|300140388|gb|EFJ07112.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
Length = 425
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP+ ++ +I LG+ K + A ++ E++ GL PD YT MI + + G + KA E
Sbjct: 256 KPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFE 315
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ M+ +GC+ + +T+ +LI L AG
Sbjct: 316 MFGDMEKAGCSANVVTYNLLIDALVKAG 343
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP+ Y +I L K + +A EL ++ K GL+PDT + ++ + M+D+A +
Sbjct: 46 KPNAYTYKCVIQSLVKAGNVVLAMELLDKMIKTGLEPDTLLCNVVLDGLGKANMMDEACK 105
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ +MK+ GC T+ ILIR+L +E
Sbjct: 106 LFASMKSMGCPADDYTYAILIRSLGRCKRDE 136
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L + N +D A K+F + K + D Y+ +I LG+ K+ A LF E+++ G
Sbjct: 91 LDGLGKANMMDEACKLFASM-KSMGCPADDYTYAILIRSLGRCKRDEEATLLFDEMEERG 149
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
P YT +I +Y + G I+ AM + M P T LI + G EL
Sbjct: 150 CTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELAC 209
Query: 219 AV 220
+
Sbjct: 210 EI 211
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+T + R +LA ++F ++K +S ++ M+ GK ++ +A + E++ G
Sbjct: 196 ITAVSRTGRTELACEIFERMKKSGVAVNTVS-FNAMLDCCGKAGKVGLAYQFMDEMEARG 254
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ P++ + +I + +A + + M+++G TP T+T +I AG
Sbjct: 255 IKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGN 309
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI K + A E+F +++K G + Y +I ++ G A +
Sbjct: 292 PDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQDARDI 351
Query: 186 YETMKASGCTPHKLTFTIL 204
Y MK G P +T T+L
Sbjct: 352 YFDMKKKGILPDAITATVL 370
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD + +I + + + +A E+F +KK G+ +T + M+ + G + A +
Sbjct: 187 PDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQF 246
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
+ M+A G P+ +TF LI L A
Sbjct: 247 MDEMEARGIKPNSITFNTLINCLGRA 272
>gi|297814175|ref|XP_002874971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297320808|gb|EFH51230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 802
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + DLA V + + K+ Y D+ +Y+ +I +GK ++ A +LF +K G++P
Sbjct: 673 LGKMGRADLAGAVLDRLTKQGGYL-DIVMYNTLINAIGKANRLDAATQLFDHMKSNGINP 731
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTIL 204
D Y MI V + G + +A + + M +GC P+ +T TIL
Sbjct: 732 DVVSYNTMIEVNSKAGKLKEAYKYLKAMLDAGCLPNHVTDTIL 774
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++PD S Y +I K+ ++ A +F E++ G PDT VY ++ L+ + +A
Sbjct: 318 HEPDNSTYRILIQGCCKSYRMDDAMRIFGEMQYNGFVPDTVVYNCLLDGTLKARKVTEAC 377
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ +E M G T+ ILI L G E
Sbjct: 378 QLFEKMVQEGVRASCWTYNILIDGLFRNGRAE 409
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 44/87 (50%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D++ Y+ +I LGK + +A + L K+G D +Y +I + +D A + +
Sbjct: 662 DIATYNVIIQGLGKMGRADLAGAVLDRLTKQGGYLDIVMYNTLINAIGKANRLDAATQLF 721
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGE 213
+ MK++G P +++ +I AG+
Sbjct: 722 DHMKSNGINPDVVSYNTMIEVNSKAGK 748
Score = 36.6 bits (83), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 106 NELDLALKVFNFVRKEVW-----YKPDLSLYSDMILML---GKNKQIAMAEELFCELKKE 157
+LD AL +F +++ + PD+ Y+ +I +L GK K + + ELK
Sbjct: 260 GDLDAALSLFKEMKERSSVSGSSFAPDICTYNSLIHVLCLFGKAKDALIVWD---ELKVS 316
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
G +PD Y +I + +D AM + M+ +G P + + L+
Sbjct: 317 GHEPDNSTYRILIQGCCKSYRMDDAMRIFGEMQYNGFVPDTVVYNCLL 364
>gi|414875530|tpg|DAA52661.1| TPA: hypothetical protein ZEAMMB73_467633 [Zea mays]
Length = 987
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 104 RQNELDLALKV-FNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
+ +D AL+V N + K DL Y +I +L K ++ A+E E+ GL P+
Sbjct: 400 KAERIDDALRVKSNMISSNC--KLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPN 457
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+YT +I Y +VGM+ A+E ++ M+ GC P+ T+ LI L
Sbjct: 458 VVIYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGL 503
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++E+ ++ + D A +FN + +KP + Y+ I K QI AE L E++++G
Sbjct: 672 ISEMIKEGKHDHAKSLFNEMISS-GHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDG 730
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ PD Y I +G +D+A T + M + C P+ T+ +L+++
Sbjct: 731 VTPDVVTYHIFINGCGHMGYMDRAFSTLKRMVDASCEPNCWTYWLLLKHF 780
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ MI+ K +A+A FC L++ G+ DT ++ Y + + KA
Sbjct: 177 PDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWL 236
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
M GC ++ ++TILI+ L A
Sbjct: 237 LMMMPLMGCRRNEYSYTILIQGLYEA 262
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL+VF + E + P+ Y +I L ++K++ A L +++++G+ P YT +I
Sbjct: 477 ALEVFKLMEHEGCH-PNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVIAYTTLI 535
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ D A +E M+ +G TP + + +L L +G E
Sbjct: 536 QGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCKSGRAE 580
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Query: 92 KADLLD---TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAE 148
KADL L L +Q +L+ AL + + + K ++ Y+ +I + K + A+
Sbjct: 627 KADLYTYSVLLQALCKQKKLNEALSILDQMTVS-GVKCNIVAYTIIISEMIKEGKHDHAK 685
Query: 149 ELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
LF E+ G P YT I Y ++G I++A M+ G TP +T+ I I
Sbjct: 686 SLFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFINGC 745
Query: 209 ENAG 212
+ G
Sbjct: 746 GHMG 749
Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
K DL YS ++ L K K++ A + ++ G+ + YT +I ++ G D A
Sbjct: 627 KADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKS 686
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRRD 223
+ M +SG P T+T+ I + G+ E L+ + RD
Sbjct: 687 LFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERD 729
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + Y+ +I K + A LF ++K GL PD + Y + + G +A E
Sbjct: 526 PGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCKSG---RAEEA 582
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
Y + G K+T+T L+ AG + A +
Sbjct: 583 YSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVL 617
>gi|356544457|ref|XP_003540667.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
chloroplastic-like [Glycine max]
Length = 711
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 125 KPDLSLYSDMILMLGKNKQIA-MAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
KP+ Y+ +I GK K ++ MA + F ++KK+G+ P + YT +I Y G +KA
Sbjct: 441 KPNAKSYTCLISAYGKQKNMSDMAADAFLKMKKDGIKPTSHSYTALIHAYSVSGWHEKAY 500
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+E M+ G P T+T L+ AG+ + + +
Sbjct: 501 AAFENMQREGIKPSIETYTALLDAFRRAGDTQTLMKI 537
>gi|168002263|ref|XP_001753833.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694809|gb|EDQ81155.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 779
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 82/170 (48%), Gaps = 8/170 (4%)
Query: 62 EAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKE 121
AI + ++ S +K EG++++ L D E ++++ AL++F ++++
Sbjct: 11 NAINNLTSLAPRGSIAKTMEGYRNK---LTINDFSLIFREFAQRSDWQKALRLFKYMQRH 67
Query: 122 VWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDK 181
W KP+ +Y+ MI ++G+ + A ELF ++ ++ + +T +I Y + G +
Sbjct: 68 QWCKPNEHVYTIMIGIMGREGMLDKASELFEDMPLNDVEWNVYSFTALINAYGRNGQHEA 127
Query: 182 AMETYETMKASGCTPHKLTFTILIRNLENAGEE-----ELVAAVRRDCIQ 226
++ MK TP+ +T+ +I G E L A +R + IQ
Sbjct: 128 SLHLLARMKREKVTPNLITYNTVINACAKGGLEWEGLLGLFAQMRHEGIQ 177
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ ++ + G+ + EL E+++ G PD Y +I Y + G A +
Sbjct: 213 PDSITYNALVDIYGQADRHEGVGELLREMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKM 272
Query: 186 YETMKASGCTPHKLTFTILI 205
++ M+ +GCTP +TF+ L+
Sbjct: 273 FKQMQEAGCTPDVVTFSTLL 292
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+S Y+ ++ GK A+++ + + + P T +T +I Y + +A
Sbjct: 352 EPDMSTYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYGNAALYSEATY 411
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ +MK SGC P T+ LI G
Sbjct: 412 AFNSMKESGCKPDLETYNALIGAHAGGG 439
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 46/106 (43%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ +S ++ GK+ LF ++K+ G +PD Y +I V+ Q G +++
Sbjct: 283 PDVVTFSTLLEAYGKHGCYDEVRLLFTDMKERGTEPDVNTYNTLIQVFGQGGFFQESINL 342
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFP 231
+ + G P T+ L+ + G + + R +Q P
Sbjct: 343 FWDLLDGGVEPDMSTYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTP 388
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209
LF +++ EG+ PD Y ++ G++++A + TM +G P +T+ L+
Sbjct: 167 LFAQMRHEGIQPDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITYNALVDIYG 226
Query: 210 NAGEEELVAAVRRDCIQYVEFPE----RFLEEVYQKHRK 244
A E V + R+ Q P+ L E Y + K
Sbjct: 227 QADRHEGVGELLREMEQAGNAPDVVAYNILIEAYGRAGK 265
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A FN + KE KPDL Y+ +I A + + EG+ D Y +I
Sbjct: 409 ATYAFNSM-KESGCKPDLETYNALIGAHAGGGLYCEAGSAYLTMIDEGISADVSTYNSLI 467
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ + G+ D A+E M+ + C+P++ T+ L+ AG
Sbjct: 468 EAFGRGGLFDDAIEFSRDMEEARCSPNRHTYEALMGVYCTAG 509
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I G+ + A ++F ++++ G PD ++ ++ Y + G D+
Sbjct: 248 PDVVAYNILIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFSTLLEAYGKHGCYDEVRLL 307
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ MK G P T+ LI+ G
Sbjct: 308 FTDMKERGTEPDVNTYNTLIQVFGQGG 334
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 5/140 (3%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
E + L +F +R E +PD+ Y+ ++ + A +F + + G+ PD+ Y
Sbjct: 160 EWEGLLGLFAQMRHEG-IQPDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITY 218
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
++ +Y Q + E M+ +G P + + ILI AG+ A + + +
Sbjct: 219 NALVDIYGQADRHEGVGELLREMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQE 278
Query: 227 YVEFPE----RFLEEVYQKH 242
P+ L E Y KH
Sbjct: 279 AGCTPDVVTFSTLLEAYGKH 298
>gi|297853270|ref|XP_002894516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297340358|gb|EFH70775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 477
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 72/144 (50%), Gaps = 3/144 (2%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R +L+ A K F +V PD+ Y+ MI ++ AEE+F E+ ++G P
Sbjct: 337 LSRAGKLE-ACKYFMDEMVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLP 395
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
+ Y MI + G +A + M++ GC P+ + ++ L+ NL NAG+ +
Sbjct: 396 NVFTYNSMIRGFCMAGKFKEACSLLKEMESRGCNPNFVVYSTLVNNLRNAGKVLEAHEIV 455
Query: 222 RDCIQYVEFPERFLEEVYQKHRKT 245
+D ++ + L +++K+R++
Sbjct: 456 KDMVEKGHYVH--LISMFKKYRRS 477
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L N+ AL + +R EV +P + ++ ++ L + ++ + E+ K G
Sbjct: 299 LHHLATGNKPLAALNLLTHMR-EVGVEPGVIHFTTLVDGLSRAGKLEACKYFMDEMVKVG 357
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
PD YT MI Y+ G ++KA E ++ M G P+ T+ +IR AG+
Sbjct: 358 CTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGK 412
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 50/111 (45%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PDL Y+ ++ L + A L +++ G++P +T ++ + G ++
Sbjct: 288 FSPDLYTYNILLHHLATGNKPLAALNLLTHMREVGVEPGVIHFTTLVDGLSRAGKLEACK 347
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERF 234
+ M GCTP + +T++I + GE E + ++ + + P F
Sbjct: 348 YFMDEMVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVF 398
>gi|125579001|gb|EAZ20147.1| hypothetical protein OsJ_35746 [Oryza sativa Japonica Group]
Length = 601
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 8/134 (5%)
Query: 90 LLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEE 149
L LLD T + L A K+FN + K+ D++ ++ MIL G + QI +A E
Sbjct: 379 FLSNSLLDLYT---KGGMLVTASKIFNKITKK-----DVASWNTMILGYGMHGQIDIAFE 430
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209
LF +K +GLD D Y ++ G++DK + + M A P ++ + ++ L
Sbjct: 431 LFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQNIEPQQMHYACMVDLLG 490
Query: 210 NAGEEELVAAVRRD 223
AG+ A + RD
Sbjct: 491 RAGQLSKCAEIIRD 504
>gi|226509960|ref|NP_001150456.1| LOC100284086 [Zea mays]
gi|195639404|gb|ACG39170.1| ATP binding protein [Zea mays]
Length = 634
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 18/125 (14%)
Query: 101 ELRRQNELDLALKVFN------------------FVRKEVWYKPDLSLYSDMILMLGKNK 142
EL R+N D ++ FN F + Y PDL Y+ ++L +
Sbjct: 286 ELMRKNGFDDGVESFNCLLVALAKEGLGREARQVFDKMHGQYSPDLRSYTALMLAWCNAR 345
Query: 143 QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFT 202
+ A ++ E+ ++G+DPD V+ MI L+ +A++ +E MKA G P+ T+T
Sbjct: 346 NLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPPPNVWTYT 405
Query: 203 ILIRN 207
+LIR+
Sbjct: 406 MLIRD 410
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 55/101 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ +++ MI L + ++ A ++F +K +G P+ YT +I + + G +D AME
Sbjct: 364 PDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKMDMAMEC 423
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
+E M+ + C P T+T L+ NA + + V AV + Q
Sbjct: 424 FEEMQEAKCQPDVATYTCLLVGYGNAKQMDRVTAVLEEMTQ 464
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+Q ++D+A++ F + +E +PD++ Y+ +++ G KQ+ + E+ ++G PD
Sbjct: 413 KQGKMDMAMECFEEM-QEAKCQPDVATYTCLLVGYGNAKQMDRVTAVLEEMTQKGCPPDA 471
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN 207
R Y +I + M D A Y+ M G P T+ +++++
Sbjct: 472 RTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKS 515
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 6/132 (4%)
Query: 79 LEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILML 138
LE+G + ++ +++ L +R+ E A+K+F ++ + P++ Y+ +I
Sbjct: 358 LEKGMDPDV--VVHNTMIEGLLRGQRRPE---AVKMFELMKAK-GPPPNVWTYTMLIRDH 411
Query: 139 GKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK 198
K ++ MA E F E+++ PD YT ++ Y +D+ E M GC P
Sbjct: 412 CKQGKMDMAMECFEEMQEAKCQPDVATYTCLLVGYGNAKQMDRVTAVLEEMTQKGCPPDA 471
Query: 199 LTFTILIRNLEN 210
T+ LI+ L N
Sbjct: 472 RTYNALIKLLTN 483
>gi|413945076|gb|AFW77725.1| ATP binding protein isoform 1 [Zea mays]
gi|413945077|gb|AFW77726.1| ATP binding protein isoform 2 [Zea mays]
gi|413945078|gb|AFW77727.1| ATP binding protein isoform 3 [Zea mays]
Length = 634
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 18/125 (14%)
Query: 101 ELRRQNELDLALKVFN------------------FVRKEVWYKPDLSLYSDMILMLGKNK 142
EL R+N D ++ FN F + Y PDL Y+ ++L +
Sbjct: 286 ELMRKNGFDDGVESFNCLLVALAKEGLGREARQVFDKMHGQYSPDLRSYTALMLAWCNAR 345
Query: 143 QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFT 202
+ A ++ E+ ++G+DPD V+ MI L+ +A++ +E MKA G P+ T+T
Sbjct: 346 NLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPPPNVWTYT 405
Query: 203 ILIRN 207
+LIR+
Sbjct: 406 MLIRD 410
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 55/101 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ +++ MI L + ++ A ++F +K +G P+ YT +I + + G +D AME
Sbjct: 364 PDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKMDMAMEC 423
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
+E M+ + C P T+T L+ NA + + V AV + Q
Sbjct: 424 FEEMQEAKCQPDVATYTCLLVGYGNAKQMDRVTAVLEEMTQ 464
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+Q ++D+A++ F + +E +PD++ Y+ +++ G KQ+ + E+ ++G PD
Sbjct: 413 KQGKMDMAMECFEEM-QEAKCQPDVATYTCLLVGYGNAKQMDRVTAVLEEMTQKGCPPDA 471
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN 207
R Y +I + M D A Y+ M G P T+ +++++
Sbjct: 472 RTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKS 515
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 6/132 (4%)
Query: 79 LEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILML 138
LE+G + ++ +++ L +R+ E A+K+F ++ + P++ Y+ +I
Sbjct: 358 LEKGMDPDV--VVHNTMIEGLLRGQRRPE---AVKMFELMKAK-GPPPNVWTYTMLIRDH 411
Query: 139 GKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK 198
K ++ MA E F E+++ PD YT ++ Y +D+ E M GC P
Sbjct: 412 CKQGKMDMAMECFEEMQEAKCQPDVATYTCLLVGYGNAKQMDRVTAVLEEMTQKGCPPDA 471
Query: 199 LTFTILIRNLEN 210
T+ LI+ L N
Sbjct: 472 RTYNALIKLLTN 483
>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Glycine max]
Length = 511
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ +Y+ +I L KNK + A +++ E+ +G+ PD YT +I + +G + +A
Sbjct: 194 KPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFS 253
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE----LVAAVRRDCIQ 226
MK P+ TF ILI L G+ + L+A + + CI+
Sbjct: 254 LLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIK 299
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 5/129 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L++ + E + L V + KPD+ Y+ +I ++ A+ +F +
Sbjct: 273 LIDALSKEGKMKEAKILLAVM----MKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSM 328
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL-ENAGE 213
+ G+ PD + YT MI + M+D+AM +E MK P +T+ LI L +N
Sbjct: 329 AQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHL 388
Query: 214 EELVAAVRR 222
E +A +R
Sbjct: 389 ERAIALCKR 397
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 54/106 (50%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE +PD+ Y+ ++ L K+ ++ A+E+F L +G + YT +I + G
Sbjct: 399 KEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFF 458
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCI 225
D+A++ M+ GC P +TF I+IR L E + + R+ I
Sbjct: 459 DEALDLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKILREMI 504
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y++MI L K K + A LF E+K + + PD Y +I + +++A+
Sbjct: 335 PDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIAL 394
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ MK G P ++TIL+ L +G E
Sbjct: 395 CKRMKEQGIQPDVYSYTILLDGLCKSGRLE 424
Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I L KN + A L +K++G+ PD YT ++ + G ++ A E
Sbjct: 370 PDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEI 429
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
++ + A G + +T+LI L AG
Sbjct: 430 FQRLLAKGYHLNVHAYTVLINRLCKAG 456
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL S +I I +A +F + K G P+ +I G I KA+
Sbjct: 90 PDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPNAITLNTLIKGLCFRGEIKKALYF 149
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
++ + A G ++++ LI L GE + VA + R
Sbjct: 150 HDQLVAQGFQLDQVSYGTLINGLCKTGETKAVARLLR 186
>gi|302841458|ref|XP_002952274.1| hypothetical protein VOLCADRAFT_42994 [Volvox carteri f.
nagariensis]
gi|300262539|gb|EFJ46745.1| hypothetical protein VOLCADRAFT_42994 [Volvox carteri f.
nagariensis]
Length = 225
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 55/107 (51%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL V+ ++ +P Y+ +++ + Q A ++ E+ G P+T Y +I
Sbjct: 40 ALDVWRELQDAGGMEPVTRTYNTLMIACNSSNQWHEALGVYNEMLANGHTPNTTTYNALI 99
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
VY + G ++K MET+ M+++GC +T++ LI E G+ EL
Sbjct: 100 TVYTKAGQLEKVMETFREMESAGCERTVITYSALISACERDGQWELA 146
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
N+ AL V+N + + P+ + Y+ +I + K Q+ E F E++ G +
Sbjct: 71 NQWHEALGVYNEMLANG-HTPNTTTYNALITVYTKAGQLEKVMETFREMESAGCERTVIT 129
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
Y+ +I + G + A++ + M GCTP+ +T+ LI L + E A V
Sbjct: 130 YSALISACERDGQWELALQMFSQMLREGCTPNVITYNSLITALAAGSQWERAADV 184
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKK-- 156
++ R + +LAL++F+ + +E P++ Y+ +I L Q A ++F +L++
Sbjct: 134 ISACERDGQWELALQMFSQMLREG-CTPNVITYNSLITALAAGSQWERAADVFVQLQRQA 192
Query: 157 ------EGLDPDTRVYTEMIGVYLQVGMIDKAM 183
EG +PD YT +I Y + G +A+
Sbjct: 193 RRLGAGEGCEPDVVTYTALINAYGRGGQWRRAL 225
>gi|77554180|gb|ABA96976.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 780
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 12/142 (8%)
Query: 90 LLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEE 149
L LLD T + L A K+FN + K+ D++ ++ MIL G + QI +A E
Sbjct: 558 FLSNSLLDLYT---KGGMLVTASKIFNKITKK-----DVASWNTMILGYGMHGQIDIAFE 609
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209
LF +K +GLD D Y ++ G++DK + + M A P ++ + ++ L
Sbjct: 610 LFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQNIEPQQMHYACMVDLLG 669
Query: 210 NAGEEELVAAVRRDCIQYVEFP 231
AG+ A + RD + FP
Sbjct: 670 RAGQLSKCAEIIRD----MPFP 687
>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
Length = 1048
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I K+K++ +LFCE+ +GL D Y +I Y Q G ++ A +
Sbjct: 847 PDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKV 906
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ M G +P +T+ IL+ L N G+ E
Sbjct: 907 FNRMVDCGVSPDIVTYNILLDCLCNNGKIE 936
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 63/113 (55%), Gaps = 2/113 (1%)
Query: 97 DTLTE-LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELK 155
+TL + L + EL++AL++ N + K+ D+ Y+ ++ L + + + A + ++
Sbjct: 180 NTLIDGLCKNGELNIALELLNEMEKK-GLGADVVTYNTLLTGLCYSGRWSDAARMLRDMM 238
Query: 156 KEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
K ++PD +T +I V+++ G +D+A E Y+ M S P+ +T+ +I L
Sbjct: 239 KRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGL 291
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
PD+ ++ +I + K + A+EL+ E+ + +DP+ Y +I G + A +
Sbjct: 243 NPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKK 302
Query: 185 TYETMKASGCTPHKLTFTILI 205
T++ M + GC P+ +T+ LI
Sbjct: 303 TFDLMASKGCFPNVVTYNTLI 323
Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+ +I K + + +LF + EG + D Y +I Y QVG + A++
Sbjct: 314 PNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDI 373
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ M + TP +T IL+ L GE E
Sbjct: 374 FCWMVSRRVTPDIITHCILLHGLCVNGEIE 403
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
E++ AL F+ +R+ Y ++ Y+ MI L K ++ A ELFC L EG+ PD R
Sbjct: 399 NGEIESALVKFDDMRESEKYIGIVA-YNIMIHGLCKADKVEKAWELFCRLPVEGVKPDAR 457
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASG 193
YT MI + G +A E MK G
Sbjct: 458 TYTIMILGLCKNGPRREADELIRRMKEEG 486
Score = 37.0 bits (84), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R + L AL V + K + Y+P + + ++ +I A L + K G +P+
Sbjct: 118 RCSRLSFALSVLGKMMK-LGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNV 176
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
VY +I + G ++ A+E M+ G +T+ L+ L +G A + RD
Sbjct: 177 VVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRD 236
>gi|357110688|ref|XP_003557148.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27270-like [Brachypodium distachyon]
Length = 1038
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
+LD A ++F +E+ + D Y++M+ GK + A LF +K+EG+ P
Sbjct: 796 GKLDKATEMFT-AAQELGLRIDEKTYTNMLSFYGKAGRHQDASVLFTRMKEEGIMPGKIS 854
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
+ M+ VY G+ DKA +E M++SG P LT+ LI+
Sbjct: 855 FNSMVNVYATSGLHDKAKFIFEEMQSSGQIPESLTYLALIK 895
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 51/99 (51%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A + F +++ ++ Y+P + Y+ ++ + G+ +I +AEE F E+ + G++PD ++
Sbjct: 158 AQEFFAWMKLQLCYEPSVVAYTILLRLYGQVGKIKLAEETFLEMLEVGVEPDAVACGTLL 217
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209
Y + G M Y ++ G P F ++ +L+
Sbjct: 218 CTYARRGQHTDMMLFYAAVRRRGVVPPVSAFNFMVSSLQ 256
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%)
Query: 128 LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYE 187
L ++ MI + G+ ++ A E+F ++ GL D + YT M+ Y + G A +
Sbjct: 782 LQTFNIMISVYGQGGKLDKATEMFTAAQELGLRIDEKTYTNMLSFYGKAGRHQDASVLFT 841
Query: 188 TMKASGCTPHKLTFTILIRNLENAG 212
MK G P K++F ++ +G
Sbjct: 842 RMKEEGIMPGKISFNSMVNVYATSG 866
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 100 TELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGL 159
T RR D+ L R+ V P +S ++ M+ L K+K L+ ++++ +
Sbjct: 219 TYARRGQHTDMMLFYAAVRRRGVV--PPVSAFNFMVSSLQKDKLHGKVIYLWNQMRETNV 276
Query: 160 DPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
P+ YT +IG Y++ ++++AM + MK S P + T++ LI
Sbjct: 277 VPNQFTYTIVIGSYVKESLLEEAMNVWRKMKRSRFVPEEATYSGLI 322
>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Brachypodium distachyon]
Length = 897
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 1/152 (0%)
Query: 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
+ L R +++A V V K PDL +YS +I L K + A L E+ KE
Sbjct: 636 VIRNLSRSENMEVAFMVLTEVEKN-GLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKE 694
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
GL+P Y +I + + G I +A ++++ A G P+ +T+T LI G+
Sbjct: 695 GLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDA 754
Query: 218 AAVRRDCIQYVEFPERFLEEVYQKHRKTQVDL 249
+ +D + P+ F+ V DL
Sbjct: 755 FDLYKDMLDRGIAPDAFVYNVLATGCSDAADL 786
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 57/110 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL Y+ +I L +I AEE + +++K GL PD Y+ +I Y + ++KA +
Sbjct: 523 PDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQL 582
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFL 235
+ M SG P+ T+T L+ + + E V+++ + + + P+ +
Sbjct: 583 LQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHI 632
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Query: 113 KVFNFVRKEVWY--KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
+ F F + V Y PD Y ++ L K ++ A+ L E+ GL P+ VY ++
Sbjct: 298 EAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLV 357
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEF 230
+++ G +A + M ++G P+K+ + LIR L G+ + + + I+
Sbjct: 358 DGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHR 417
Query: 231 PERF 234
P+ F
Sbjct: 418 PDTF 421
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 9/121 (7%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP+ +Y+ +I+ K I++A E + K + PD Y +I VG I++A E
Sbjct: 487 KPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEE 546
Query: 185 TYETMKASGCTPHKLTFTILI------RNLENAG---EEELVAAVRRDCIQYVEFPERFL 235
Y ++ G P + T++ LI RNLE A ++ L + ++ + Y + E +
Sbjct: 547 YYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYF 606
Query: 236 E 236
+
Sbjct: 607 K 607
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 46/89 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD +Y +I L +++ + +A + E++K GL PD +Y+ +I ++ ++KA+
Sbjct: 627 KPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVG 686
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
+ M G P + + LI +G+
Sbjct: 687 LLDEMAKEGLEPGIVCYNALIDGFCRSGD 715
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ L + +++ A+ + + + KE +P + Y+ +I ++ I+ A +F + +G
Sbjct: 672 ISGLCKMADMEKAVGLLDEMAKE-GLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKG 730
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
L P+ YT +I + G I A + Y+ M G P + +L +A + E
Sbjct: 731 LLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLE 787
>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
Length = 746
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 51/88 (57%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD++ ++ +I+ L ++ A +L ++ +GL PD + +I +VG A+
Sbjct: 358 PDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRL 417
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+E MK+SGCTP ++T+ LI NL + G+
Sbjct: 418 FEEMKSSGCTPDEVTYNTLIDNLCSLGK 445
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
++ +I L K+K+I A +L ++ EGL P+ Y ++ Y + G I KA + +TM
Sbjct: 503 FNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMT 562
Query: 191 ASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
A+G +T+ LI L AG ++ + R
Sbjct: 563 ANGFEVDVVTYGTLINGLCKAGRTQVALKLLR 594
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 59/139 (42%), Gaps = 9/139 (6%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E KPD+ ++ ++ L + Q+ A + E+ G+ PD +T ++ +++ G I
Sbjct: 178 ERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIK 237
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAG---------EEELVAAVRRDCIQYVEFP 231
A+ M GC+P K+T +LI G ++E+ D I Y F
Sbjct: 238 AALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFV 297
Query: 232 ERFLEEVYQKHRKTQVDLV 250
+ + H +D++
Sbjct: 298 NGLCQNGHVGHALKVMDVM 316
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
ALKV + + +E + PD+ Y+ ++ L KN Q+ A+ + ++ + G PD + +I
Sbjct: 309 ALKVMDVMVQE-GHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLI 367
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
+++A++ + G +P TF ILI L G+ +L
Sbjct: 368 VALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQL 413
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ ++ +I L K +A LF E+K G PD Y +I +G + KA++
Sbjct: 393 PDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDL 452
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ M+++GC +T+ +I L
Sbjct: 453 LKEMESAGCPRSTVTYNTIIDGL 475
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 115 FNFVRKEV--WYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGV 172
++++E+ ++PD Y+ + L +N + A ++ + +EG DPD Y ++
Sbjct: 275 LGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNC 334
Query: 173 YLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ G +++A M GC P TF LI
Sbjct: 335 LCKNGQLEEAKGILNQMVERGCLPDITTFNTLI 367
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 103 RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
R+Q +D V N + + D +Y+ ++ +L + ++ + E ++ E+ + G+ PD
Sbjct: 125 RQQLFVDAVDLVLNQLDPLFGIQADTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPD 184
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
+ ++ + + A+ E M +SG P + TFT L++ G + AA+R
Sbjct: 185 VVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEG--SIKAALR 241
>gi|413920478|gb|AFW60410.1| hypothetical protein ZEAMMB73_296337 [Zea mays]
Length = 676
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L ++ ++ A ++F + K YKP++ Y+ MI K ++A AE L +
Sbjct: 292 LIDGLCKI---GWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRM 348
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
++GL P+T YT +I + + G D+A E MK G P+ T+ +I G+
Sbjct: 349 VEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGK 407
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 61/110 (55%), Gaps = 1/110 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+TE +Q + AL +F + ++ + PD+ Y+ +I M + +Q+ +++LF + G
Sbjct: 434 ITEHCKQGHITCALDLFKQMAEKSCH-PDIHTYTTIIAMYCQQRQMEQSQQLFDKCLSIG 492
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
L P + YT MI Y ++G + A++ +E M GC P +T+ LI +L
Sbjct: 493 LVPTKQTYTSMIAGYCRLGKLTSALKVFERMVQHGCLPDSITYGALISSL 542
>gi|8778500|gb|AAF79508.1|AC002328_16 F20N2.6 [Arabidopsis thaliana]
Length = 554
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R +L+ A K F +V PD+ Y+ MI ++ AEE+F E+ ++G P
Sbjct: 414 LSRAGKLE-ACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLP 472
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
+ Y MI + G +A + M++ GC P+ + ++ L+ NL+NAG+ V
Sbjct: 473 NVFTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVYSTLVNNLKNAGKVLEAHEVV 532
Query: 222 RDCIQ 226
+D ++
Sbjct: 533 KDMVE 537
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L N+ AL + N +R EV +P + ++ +I L + ++ + E K G
Sbjct: 376 LHHLATGNKPLAALNLLNHMR-EVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVG 434
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
PD YT MI Y+ G ++KA E ++ M G P+ T+ +IR AG+
Sbjct: 435 CTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGK 489
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 49/111 (44%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PDL Y+ ++ L + A L +++ G++P +T +I + G ++
Sbjct: 365 FSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACK 424
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERF 234
+ GCTP + +T++I + GE E + ++ + + P F
Sbjct: 425 YFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVF 475
>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 550
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 7/106 (6%)
Query: 104 RQNELDLALKVFNFVRKEVWYK---PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD 160
+ N +D AL +FN ++ YK P++ YS +I L K+ +I+ A ELF + G
Sbjct: 370 KNNRIDEALSLFN----KMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPS 425
Query: 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
P+ Y M+ ++ ++DKA+E + M G TP+ ++ ILI
Sbjct: 426 PNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILIN 471
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
P++ Y+ M+ L K + + A ELF + + GL P+ Y +I Y + ID+AM
Sbjct: 425 SPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMN 484
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+E M P +T+ LI L +G
Sbjct: 485 LFEEMHRRNLVPDSVTYNCLIDGLCKSG 512
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
+LD L +++ +D A+++FN + E P++S Y+ +I K+K+I A LF E+
Sbjct: 434 MLDALCKIQL---VDKAIELFNLMF-ERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEM 489
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTIL 204
+ L PD+ Y +I + G I A E + M G +T+ IL
Sbjct: 490 HRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGGPPVDVITYNIL 539
Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
N++ A K+F+ E PD+ Y+ +I+ KN +I A LF ++ + L P+
Sbjct: 337 NDVVEARKLFD-TFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVT 395
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
Y+ +I + G I A E + + G +P+ +T+ I++ L
Sbjct: 396 YSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDAL 438
>gi|240254191|ref|NP_174467.4| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|357528959|sp|Q9C6S6.2|PPR67_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g31840
gi|332193282|gb|AEE31403.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 840
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
++ E+D A +F V ++ +PDL YS +I K + M +LF + +G+ D
Sbjct: 298 KRGEMDRAFDLFK-VMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDV 356
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
V++ I VY++ G + A Y+ M G +P+ +T+TILI+ L G
Sbjct: 357 VVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDG 405
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
+ L++F+ +++ D+++ + +I +L K +I A + F L + ++PD Y M
Sbjct: 584 IGLQLFDLMQRN-KISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTM 642
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
I Y + +D+A +E +K + P+ +T TILI L
Sbjct: 643 ICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVL 681
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + N++D A+++F+ + E KP+ Y ++ K+ I + +LF E++++G+ P
Sbjct: 681 LCKNNDMDGAIRMFS-IMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISP 739
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
Y+ +I + G +D+A + + P + + ILIR G
Sbjct: 740 SIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVG 790
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 105 QNELDLALKVFNFVRKEVWYK--------PDLSLYSDMILMLGKNKQIAMAEELFCELKK 156
+ +D+ +K + V YK P++ Y+ +I L ++ +I A ++ ++ K
Sbjct: 360 SSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILK 419
Query: 157 EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
G++P Y+ +I + + G + YE M G P + + +L+ L G
Sbjct: 420 RGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQG 475
>gi|125531299|gb|EAY77864.1| hypothetical protein OsI_32907 [Oryza sativa Indica Group]
Length = 1089
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 5/131 (3%)
Query: 86 RICRLLKADLLDTLTEL----RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141
R C+L+ + T L + D AL+V + KE KPD LY+ +I K
Sbjct: 451 RFCKLINNPKMSTFNMLLSVCANSQDFDGALQVMVLL-KEAGLKPDCKLYTTLISTCAKC 509
Query: 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF 201
++ E+F E+ G++P+ Y+ +I + G + KA Y M + P ++ F
Sbjct: 510 GKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVF 569
Query: 202 TILIRNLENAG 212
LI +G
Sbjct: 570 NALISACGESG 580
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 46/89 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
P +S ++ ++ + ++ A ++ LK+ GL PD ++YT +I + G +D E
Sbjct: 458 NPKMSTFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFE 517
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
+ M ++G P+ T++ LI AG+
Sbjct: 518 VFHEMVSAGIEPNVNTYSALIDGCAKAGQ 546
>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
Length = 460
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ Y+ +I L K++ + A + F E+ KEG+ PD Y+ ++ + +G +++A
Sbjct: 77 KPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATS 136
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
++ M P+K+TFTILI L
Sbjct: 137 LFKQMVERNVIPNKVTFTILIDGL 160
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L + LD A ++ +E +P++ +Y+ +I + ++ A ELF L +G
Sbjct: 297 LDGLCKHGHLDEAFELLK-AMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKG 355
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ P YT MI L+ G+ ++A E + M +GC P+ T+ ++I+ G+
Sbjct: 356 IQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNGD 410
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
++++D A K+FN + ++ P++ Y+ +I K+ +I A+ L E+ + L PD
Sbjct: 198 RSQMDEAQKLFNIMDRK-GCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIF 256
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
Y+ ++ + QVG +A E + M + G P+ +T++I++ L G
Sbjct: 257 TYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHG 304
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
Query: 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
+ +L L R NE K V + V P+ ++ +I L K + I+ A +F
Sbjct: 119 SSILHGFCNLGRVNEATSLFK--QMVERNVI--PNKVTFTILIDGLCKKRMISEAWLVFE 174
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ ++GL+PD Y ++ Y +D+A + + M GC P+ ++ ILI +G
Sbjct: 175 TMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSG 234
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 4/138 (2%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L + R +E L + E +PD+ Y+ ++ Q+ A++LF +
Sbjct: 156 LIDGLCKKRMISEAWLVFETMT----EKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIM 211
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
++G P+ R Y +I + + G ID+A M TP T++ L+R G
Sbjct: 212 DRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRP 271
Query: 215 ELVAAVRRDCIQYVEFPE 232
+ + ++ Y P
Sbjct: 272 QEAQELLKEMCSYGLLPN 289
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P L ++ ++ L +I A +LF E+ K G +PD Y+ +I ++G A++
Sbjct: 7 QPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQ 66
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
+ M+ GC P+ + + +I +L
Sbjct: 67 LLKKMEEKGCKPNVVAYNTIIDSL 90
Score = 40.0 bits (92), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+L YS ++ L K+ + A EL +++ ++P+ +YT +I G ++ A E
Sbjct: 288 PNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAAREL 347
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ + G P +T+T++I L G
Sbjct: 348 FSNLFVKGIQPTVVTYTVMISGLLKGG 374
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ YS ++ + + A+EL E+ GL P+ Y+ ++ + G +D+A E
Sbjct: 253 PDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFEL 312
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ M+ S P+ +TILI + G+ E
Sbjct: 313 LKAMQESKIEPNIFIYTILIEGMCTFGKLE 342
>gi|334182978|ref|NP_001185123.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|332193283|gb|AEE31404.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 811
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
++ E+D A +F V ++ +PDL YS +I K + M +LF + +G+ D
Sbjct: 298 KRGEMDRAFDLFK-VMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDV 356
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
V++ I VY++ G + A Y+ M G +P+ +T+TILI+ L G
Sbjct: 357 VVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDG 405
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
+ L++F+ +++ D+++ + +I +L K +I A + F L + ++PD Y M
Sbjct: 555 IGLQLFDLMQRN-KISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTM 613
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
I Y + +D+A +E +K + P+ +T TILI L
Sbjct: 614 ICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVL 652
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + N++D A+++F+ + E KP+ Y ++ K+ I + +LF E++++G+ P
Sbjct: 652 LCKNNDMDGAIRMFS-IMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISP 710
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
Y+ +I + G +D+A + + P + + ILIR G
Sbjct: 711 SIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVG 761
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 105 QNELDLALKVFNFVRKEVWYK--------PDLSLYSDMILMLGKNKQIAMAEELFCELKK 156
+ +D+ +K + V YK P++ Y+ +I L ++ +I A ++ ++ K
Sbjct: 360 SSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILK 419
Query: 157 EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
G++P Y+ +I + + G + YE M G P + + +L+ L G
Sbjct: 420 RGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQG 475
>gi|224093900|ref|XP_002310039.1| predicted protein [Populus trichocarpa]
gi|222852942|gb|EEE90489.1| predicted protein [Populus trichocarpa]
Length = 507
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE+ KPD+ Y+ +I + K +++ A + +++E + PD YT +IG VG
Sbjct: 238 KELGVKPDIVTYNSLIDVFCKGRELEKAYGVVARMREEDILPDVITYTSIIGGLGLVGQP 297
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRN 207
DKA + + MK GC P + +IRN
Sbjct: 298 DKARDMLKEMKEHGCYPDVAAYNAVIRN 325
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I LG Q A ++ E+K+ G PD Y +I Y +D A
Sbjct: 279 PDVITYTSIIGGLGLVGQPDKARDMLKEMKEHGCYPDVAAYNAVIRNYCIAKRLDAAYSL 338
Query: 186 YETMKASGCTPHKLTFTILIR 206
M++ G +P+ ++ + R
Sbjct: 339 MAEMESKGMSPNATSYNLFFR 359
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L ++ + A V++ ++K ++P+L ++ ++L K AE + E+K+ G
Sbjct: 187 LRTLCQEKSMSDARNVYHHLKKG--FRPNLQTFN---ILLSGWKSSEEAELFYEEMKELG 241
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ PD Y +I V+ + ++KA M+ P +T+T +I L G+ +
Sbjct: 242 VKPDIVTYNSLIDVFCKGRELEKAYGVVARMREEDILPDVITYTSIIGGLGLVGQPD 298
>gi|147841962|emb|CAN63129.1| hypothetical protein VITISV_001456 [Vitis vinifera]
Length = 701
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 4/152 (2%)
Query: 70 MKLAKS--SSKLEEGFQSRICRLLKADLL--DTLTELRRQNELDLALKVFNFVRKEVWYK 125
+K+A+S S + E S++ R L +L D + L + AL F F RK +
Sbjct: 114 VKIAESLDSCEATEEDVSQVLRCLGDKILEQDAVIVLNNMTNPETALLAFGFFRKRLKPS 173
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
++ LY+ + + K + + AE+LF E+ + G+ PD ++ +I + +KA+E
Sbjct: 174 REVILYNVTLKVFRKCRNLDXAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNKAVEW 233
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELV 217
+E M GC P +T++ +I AG ++
Sbjct: 234 FEKMPEFGCHPDDVTYSAMIDAYGRAGNVDMA 265
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
TL R+ LD A K+F+ + E KPD +S +I + A E F ++ +
Sbjct: 182 TLKVFRKCRNLDXAEKLFDEML-ERGVKPDNITFSTIISCARVSSLPNKAVEWFEKMPEF 240
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
G PD Y+ MI Y + G +D A++ Y+ + +TF+ LIR
Sbjct: 241 GCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIR 289
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD YS MI G+ + MA +L+ + E D ++ +I +Y G D +
Sbjct: 244 PDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNV 303
Query: 186 YETMKASGCTPHKLTFTILI 205
YE MKA G P+ + + L+
Sbjct: 304 YEEMKALGVKPNLVIYNTLL 323
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ ++ G+ + A ++ E+K++GL+ +Y ++ + VG ++A +E MK
Sbjct: 354 YAALLRAYGRARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMK 413
Query: 191 ASG-CTPHKLTFTILI 205
+SG C P TF+ LI
Sbjct: 414 SSGNCMPDSWTFSSLI 429
>gi|18642701|gb|AAL76193.1|AC092173_5 Putative crp1 protein [Oryza sativa Japonica Group]
Length = 1089
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 5/131 (3%)
Query: 86 RICRLLKADLLDTLTEL----RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141
R C+L+ + T L + D AL+V + KE KPD LY+ +I K
Sbjct: 451 RFCKLINNPKMSTFNMLLSVCANSQDFDGALQVMVLL-KEAGLKPDCKLYTTLISTCAKC 509
Query: 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF 201
++ E+F E+ G++P+ Y+ +I + G + KA Y M + P ++ F
Sbjct: 510 GKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVF 569
Query: 202 TILIRNLENAG 212
LI +G
Sbjct: 570 NALISACGESG 580
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 46/89 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
P +S ++ ++ + ++ A ++ LK+ GL PD ++YT +I + G +D E
Sbjct: 458 NPKMSTFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFE 517
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
+ M ++G P+ T++ LI AG+
Sbjct: 518 VFHEMVSAGIEPNVNTYSALIDGCAKAGQ 546
>gi|297827231|ref|XP_002881498.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327337|gb|EFH57757.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 756
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
L+ AL+ F+ + K PD Y+ +I + K++ AE+LF E+K +P YT
Sbjct: 270 LETALRFFDDM-KTRGISPDAVTYNTIINGYCRFKKMDEAEKLFVEMKGNNSEPSVVTYT 328
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
MI YL V +D + +E M++ G P+ T++ L+ L + G+
Sbjct: 329 TMIKGYLSVDRVDDGLRIFEEMRSFGIEPNATTYSTLLPGLCDVGK 374
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+ +A + FN + E +P Y+ M+ + ++ A F ++K G+ PD
Sbjct: 231 RRGRYMMAKRYFNKMVSE-GVEPTRHTYNLMLWGFFLSLRLETALRFFDDMKTRGISPDA 289
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
Y +I Y + +D+A + + MK + P +T+T +I+
Sbjct: 290 VTYNTIINGYCRFKKMDEAEKLFVEMKGNNSEPSVVTYTTMIK 332
>gi|449435418|ref|XP_004135492.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial-like [Cucumis sativus]
gi|449494962|ref|XP_004159696.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial-like [Cucumis sativus]
Length = 514
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 60/121 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL Y+ ++ K ++I MA+ +F ++ + G+ PD Y +I + + +AM
Sbjct: 391 PDLIFYTTVVDYFCKTRKIEMAQGVFRDMIEIGISPDVVSYNALINGLCKASKVSEAMLL 450
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVYQKHRKT 245
YE M+ GC P ++TF ++I L E L V ++ ++FL E K ++
Sbjct: 451 YEEMQIRGCYPDEVTFKLIIGGLLRKKELSLACQVWDQMMEKGYTLDKFLSETLIKAIRS 510
Query: 246 Q 246
+
Sbjct: 511 R 511
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 49/97 (50%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K++ Y PD+ ++ + +L + + +A + F E+ +G +PD YT ++ +
Sbjct: 106 KQLGYLPDIWAFNIYLNLLFRENLLELALKFFDEMVAKGREPDVVTYTIIVDRLCKAKQY 165
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
DKA+E + M G +P T L+ L + G+ +L
Sbjct: 166 DKAVEFWRCMVNKGLSPDMKACTALVVGLCDGGKVDL 202
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 38/143 (26%)
Query: 99 LTELRRQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
L L R+N L+LALK F+ V K +PD+ Y+ ++ L K KQ A E + + +
Sbjct: 121 LNLLFRENLLELALKFFDEMVAKG--REPDVVTYTIIVDRLCKAKQYDKAVEFWRCMVNK 178
Query: 158 GLDPDTR-----------------------------------VYTEMIGVYLQVGMIDKA 182
GL PD + ++ ++ + + G I KA
Sbjct: 179 GLSPDMKACTALVVGLCDGGKVDLAYELTVGEMKGEMKFNNLIFNSLMSGFCKSGRISKA 238
Query: 183 METYETMKASGCTPHKLTFTILI 205
+ M GC P +T+ IL+
Sbjct: 239 LAIKSFMSKHGCEPDLITYNILL 261
>gi|255569680|ref|XP_002525805.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534892|gb|EEF36579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 182
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
Q LD+AL +F+ ++K K D Y+ ++ + K ++ A+ELF L EGL PD
Sbjct: 37 NQGHLDMALALFHEMQKNTL-KLDCVAYNIIVDGMCKAGKLNDAKELFSTLPIEGLQPDV 95
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
R Y +I V+ G +++A + + M+ G P ++ ++I+
Sbjct: 96 RTYNILIKVFCNEGSLEEAYQVFREMEEGGSLPDGCSYNVIIQGF 140
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ P +Y ++ + MA LF E++K L D Y ++ + G ++ A
Sbjct: 21 HSPTTVIYITLLDGFCNQGHLDMALALFHEMQKNTLKLDCVAYNIIVDGMCKAGKLNDAK 80
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
E + T+ G P T+ ILI+ N G E V R+
Sbjct: 81 ELFSTLPIEGLQPDVRTYNILIKVFCNEGSLEEAYQVFRE 120
>gi|357481229|ref|XP_003610900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512235|gb|AES93858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1508
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT- 163
Q+ AL+++ + + WY + + + ++ +LGK Q +A E+F K E + DT
Sbjct: 207 QSSWQRALELYECLTMQQWYATNARMVATILSVLGKANQEGIAVEIFA--KAESVIADTV 264
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+VY M+GVY + G +K E + M+ GC P ++F LI
Sbjct: 265 QVYNAMMGVYARNGNFEKVNEMFNLMRERGCEPDIVSFNTLI 306
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 57/114 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
PD Y+ +I +LGK +I A ++ E+ G+ P Y+ +I Y +VG +A E
Sbjct: 473 NPDAVTYTVLIDLLGKASKIEEASKVMSEMLDAGVKPTLHTYSALICAYAKVGRRVEAEE 532
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEV 238
T+ M+ SG L +++++ E + AA+ ++ I+ P+ L EV
Sbjct: 533 TFNRMRESGIKADHLAYSVMLDFFLRFNEIKKAAALYQEMIEAGFTPDTGLYEV 586
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PD Y+ ++ K ++ E+ K G D Y +I +Y + G D+A+
Sbjct: 402 FSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGKDEMTYNTIIHMYGKHGRHDEAL 461
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
Y MK+SG P +T+T+LI L A + E + V
Sbjct: 462 RLYRDMKSSGRNPDAVTYTVLIDLLGKASKIEEASKV 498
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ Y+ +I + + A +F ++ PD Y MI VY + G KA
Sbjct: 333 RPDIITYNTLISACSRESNLKEAIGVFSHMESNRCQPDLWTYNAMISVYGRCGFALKAEH 392
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
+E +K++G +P +T+ L+ G E V + + ++
Sbjct: 393 LFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVK 434
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP L YS +I K + AEE F +++ G+ D Y+ M+ +L+ I KA
Sbjct: 508 KPTLHTYSALICAYAKVGRRVEAEETFNRMRESGIKADHLAYSVMLDFFLRFNEIKKAAA 567
Query: 185 TYETMKASGCTPHKLTFTILIRNL--ENAGE 213
Y+ M +G TP + +++ L EN G+
Sbjct: 568 LYQEMIEAGFTPDTGLYEVMLPALVRENMGD 598
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K + +P Y MI K + AEELF EL+ G D Y M+ +Y G
Sbjct: 1026 KSLGLEPKRDTYRSMIAAFSKQQLYDQAEELFEELRSNGYKLDRSFYHLMMKMYRTSGDH 1085
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
KA E MK +G P+ T +L+ + +G+ E
Sbjct: 1086 QKAENLLEIMKEAGIEPNTATMHLLMVSYGKSGQPE 1121
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 89 RLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAE 148
++ K+ +L L + L KV+N + K Y P + LY MI +L + K++
Sbjct: 891 KISKSSILLMLEAFAQAGNLFEVQKVYNGM-KAAGYFPTMHLYRLMIGLLCRFKRVRDVR 949
Query: 149 ELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ E+ + G PD +++ ++ +Y + Y+ ++ +G P + T+ LI
Sbjct: 950 VMLSEMGEAGFKPDLQIFNSVLKLYSSIEEFQNMGVIYQMIQDAGLAPDEETYNTLI 1006
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ D Y+ +I M GK+ + A L+ ++K G +PD YT +I + + I++A
Sbjct: 437 FGKDEMTYNTIIHMYGKHGRHDEALRLYRDMKSSGRNPDAVTYTVLIDLLGKASKIEEAS 496
Query: 184 ETYETMKASGCTPHKLTFTILI 205
+ M +G P T++ LI
Sbjct: 497 KVMSEMLDAGVKPTLHTYSALI 518
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%)
Query: 118 VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177
+ KE +P+ + +++ GK+ Q A+ + L+ G DT Y+ +I YL+ G
Sbjct: 1094 IMKEAGIEPNTATMHLLMVSYGKSGQPEEADRILKNLRTMGAVLDTLPYSSVIDAYLKKG 1153
Query: 178 MIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+E MK + P +T IR +GE
Sbjct: 1154 DAKAGIEKLTEMKEAAIEPDHRIWTCFIRAASLSGE 1189
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 45/90 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ +I M ++ + L ++K GL+P Y MI + + + D+A E
Sbjct: 997 PDEETYNTLITMYCRDHRPEEGLSLMHKMKSLGLEPKRDTYRSMIAAFSKQQLYDQAEEL 1056
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+E ++++G + + ++++ +G+ +
Sbjct: 1057 FEELRSNGYKLDRSFYHLMMKMYRTSGDHQ 1086
Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 32/54 (59%)
Query: 129 SLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKA 182
++Y +I K++Q +A +LF +++ G++P +Y M+ VY ++G + A
Sbjct: 718 TMYESLIHECTKSEQFDIASQLFSDMRFNGVEPSECLYQSMVSVYCRIGFPETA 771
>gi|449457361|ref|XP_004146417.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g23020-like [Cucumis sativus]
Length = 858
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 60/112 (53%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L+ Q + AL++F + Y+ ++ Y+ ++ LGK ++ + E L+ E+ K+G+ P
Sbjct: 160 LKEQTSWERALEIFEWFNMAGCYEVNVIHYNIVLGTLGKAQKWRLVESLWVEMNKKGIKP 219
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
Y +I VY + G ++A+ E M G P ++T I+++ + AGE
Sbjct: 220 INSTYGTLIDVYSKGGFKEEALVWLERMNEQGMEPDEVTMGIVVQLYKKAGE 271
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
YS +I K + MA++L+ E+ K G+ PD VY +I + G + +A+ MK
Sbjct: 597 YSVVISSFSKLGHLEMADKLYREMVKHGVQPDIIVYGVLINAFADAGSVKEAINYVNAMK 656
Query: 191 ASGCTPHKLTFTILIR 206
G + + + + LI+
Sbjct: 657 RDGLSGNTVIYNSLIK 672
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD YS +I +L AMA +++ GL D Y+ +I + ++G ++ A +
Sbjct: 557 PDKCSYSSLIQILTGADMPAMALAYLKKMQSAGLVSDCIPYSVVISSFSKLGHLEMADKL 616
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE----LVAAVRRD 223
Y M G P + + +LI +AG + V A++RD
Sbjct: 617 YREMVKHGVQPDIIVYGVLINAFADAGSVKEAINYVNAMKRD 658
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 98 TLTELRRQNELDLALKVF-NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKK 156
++ + L++A K++ V+ V +PD+ +Y +I + A +K+
Sbjct: 600 VISSFSKLGHLEMADKLYREMVKHGV--QPDIIVYGVLINAFADAGSVKEAINYVNAMKR 657
Query: 157 EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP 196
+GL +T +Y +I +Y +VG + +A E Y+ ++ + P
Sbjct: 658 DGLSGNTVIYNSLIKLYTKVGYLKEAHEAYKMLEQTDDGP 697
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ +I + K+ I +A F E+++ GL PD Y ++ Y M+ +A +
Sbjct: 384 PDTRTYNILISLYAKHDNIDLASNYFAEMEEAGLQPDIVSYRTLLYAYSIRHMVAEAEKL 443
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
M G + T + L R +AG
Sbjct: 444 ITEMDERGLEIDEFTQSALTRMYIDAG 470
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 124 YKPDLSL----YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+ P +SL Y+ +I GK Q+ A F + KEG+ P T + MI + G +
Sbjct: 308 HPPHVSLSTYTYNTLIDTYGKAGQLKEASTTFENMLKEGVSPTTVTFNTMIHICGNHGQL 367
Query: 180 DKAMETYETMKASGCTPHKLTFTILI 205
+ + M+ C P T+ ILI
Sbjct: 368 KEVTFLMQKMEELQCPPDTRTYNILI 393
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P ++ MI + G + Q+ L ++++ PDTR Y +I +Y + ID A
Sbjct: 349 PTTVTFNTMIHICGNHGQLKEVTFLMQKMEELQCPPDTRTYNILISLYAKHDNIDLASNY 408
Query: 186 YETMKASGCTPHKLTFTIL-----IRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVY 239
+ M+ +G P +++ L IR++ A E+L+ + ++ EF + L +Y
Sbjct: 409 FAEMEEAGLQPDIVSYRTLLYAYSIRHMV-AEAEKLITEMDERGLEIDEFTQSALTRMY 466
>gi|449518091|ref|XP_004166077.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g23020-like [Cucumis sativus]
Length = 859
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 60/112 (53%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L+ Q + AL++F + Y+ ++ Y+ ++ LGK ++ + E L+ E+ K+G+ P
Sbjct: 161 LKEQTSWERALEIFEWFNMAGCYEVNVIHYNIVLGTLGKAQKWRLVESLWVEMNKKGIKP 220
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
Y +I VY + G ++A+ E M G P ++T I+++ + AGE
Sbjct: 221 INSTYGTLIDVYSKGGFKEEALVWLERMNEQGMEPDEVTMGIVVQLYKKAGE 272
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
YS +I K + MA++L+ E+ K G+ PD VY +I + G + +A+ MK
Sbjct: 598 YSVVISSFSKLGHLEMADKLYREMVKHGVQPDIIVYGVLINAFADAGSVKEAINYVNAMK 657
Query: 191 ASGCTPHKLTFTILIR 206
G + + + + LI+
Sbjct: 658 RDGLSGNTVIYNSLIK 673
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD YS +I +L AMA +++ GL D Y+ +I + ++G ++ A +
Sbjct: 558 PDKCSYSSLIQILTGADMPAMALAYLKKMQSAGLVSDCIPYSVVISSFSKLGHLEMADKL 617
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE----LVAAVRRD 223
Y M G P + + +LI +AG + V A++RD
Sbjct: 618 YREMVKHGVQPDIIVYGVLINAFADAGSVKEAINYVNAMKRD 659
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 98 TLTELRRQNELDLALKVF-NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKK 156
++ + L++A K++ V+ V +PD+ +Y +I + A +K+
Sbjct: 601 VISSFSKLGHLEMADKLYREMVKHGV--QPDIIVYGVLINAFADAGSVKEAINYVNAMKR 658
Query: 157 EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP 196
+GL +T +Y +I +Y +VG + +A E Y+ ++ + P
Sbjct: 659 DGLSGNTVIYNSLIKLYTKVGYLKEAHEAYKMLEQTDDGP 698
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ +I + K+ I +A F E+++ GL PD Y ++ Y M+ +A +
Sbjct: 385 PDTRTYNILISLYAKHDNIDLASNYFAEMEEAGLQPDIVSYRTLLYAYSIRHMVAEAEKL 444
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
M G + T + L R +AG
Sbjct: 445 ITEMDERGLEIDEFTQSALTRMYIDAG 471
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 124 YKPDLSL----YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+ P +SL Y+ +I GK Q+ A F + KEG+ P T + MI + G +
Sbjct: 309 HPPHVSLSTYTYNTLIDTYGKAGQLKEASTTFENMLKEGVSPTTVTFNTMIHICGNHGQL 368
Query: 180 DKAMETYETMKASGCTPHKLTFTILI 205
+ + M+ C P T+ ILI
Sbjct: 369 KEVTFLMQKMEELQCPPDTRTYNILI 394
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P ++ MI + G + Q+ L ++++ PDTR Y +I +Y + ID A
Sbjct: 350 PTTVTFNTMIHICGNHGQLKEVTFLMQKMEELQCPPDTRTYNILISLYAKHDNIDLASNY 409
Query: 186 YETMKASGCTPHKLTFTIL-----IRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVY 239
+ M+ +G P +++ L IR++ A E+L+ + ++ EF + L +Y
Sbjct: 410 FAEMEEAGLQPDIVSYRTLLYAYSIRHMV-AEAEKLITEMDERGLEIDEFTQSALTRMY 467
>gi|12321310|gb|AAG50731.1|AC079041_24 PPR-repeat protein, putative [Arabidopsis thaliana]
Length = 690
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
++ E+D A +F V ++ +PDL YS +I K + M +LF + +G+ D
Sbjct: 298 KRGEMDRAFDLFK-VMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDV 356
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
V++ I VY++ G + A Y+ M G +P+ +T+TILI+ L G
Sbjct: 357 VVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDG 405
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
+ L++F+ +++ D+++ + +I +L K +I A + F L + ++PD Y M
Sbjct: 584 IGLQLFDLMQRN-KISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTM 642
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
I Y + +D+A +E +K + P+ +T TILI L
Sbjct: 643 ICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVL 681
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 105 QNELDLALKVFNFVRKEVWYK--------PDLSLYSDMILMLGKNKQIAMAEELFCELKK 156
+ +D+ +K + V YK P++ Y+ +I L ++ +I A ++ ++ K
Sbjct: 360 SSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILK 419
Query: 157 EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
G++P Y+ +I + + G + YE M G P + + +L+ L G
Sbjct: 420 RGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQG 475
>gi|449524124|ref|XP_004169073.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11900-like [Cucumis sativus]
Length = 363
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
E+D A ++FN + K + PDL Y+ ++ M+G+ ++ +F +K+EG+ PD Y
Sbjct: 194 EIDKAFQIFNQM-KCLSCTPDLYTYNIILDMVGRAGRVDEILHIFVSMKEEGIAPDIVSY 252
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+I +VG +D ++ + M A G P LT+T LI + G E
Sbjct: 253 NTLINSLRKVGRLDISVIYFREMVAMGIEPDLLTYTALIESYGRFGNLE 301
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R +D L +F KE PD+ Y+ +I L K ++ ++ F E+ G++PD
Sbjct: 226 RAGRVDEILHIF-VSMKEEGIAPDIVSYNTLINSLRKVGRLDISVIYFREMVAMGIEPDL 284
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN 207
YT +I Y + G +++A+ + MK + P + LIRN
Sbjct: 285 LTYTALIESYGRFGNLEEALTLLKEMKLNNIRPSSYIYRSLIRN 328
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 9/110 (8%)
Query: 134 MILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG 193
+I + ++I A ++F ++K PD Y ++ + + G +D+ + + +MK G
Sbjct: 185 IIFAFSERREIDKAFQIFNQMKCLSCTPDLYTYNIILDMVGRAGRVDEILHIFVSMKEEG 244
Query: 194 CTPHKLTFTILIRNLENAGE--------EELVA-AVRRDCIQYVEFPERF 234
P +++ LI +L G E+VA + D + Y E +
Sbjct: 245 IAPDIVSYNTLINSLRKVGRLDISVIYFREMVAMGIEPDLLTYTALIESY 294
>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
Length = 478
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 2/127 (1%)
Query: 88 CRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNK-QIAM 146
C+ + L +N+L +A+ + ++R E+ + + + +I L KN I
Sbjct: 116 CKPTDKSYISVFAILVEENQLKVAMSFYKYMR-EMGVRQSVVSLNVLIKALCKNSGTIDA 174
Query: 147 AEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
A E+F E+ K G DPD+ Y +I ++G +A E ++ M GC+P +T++ L+
Sbjct: 175 AFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKGCSPSVVTYSCLMH 234
Query: 207 NLENAGE 213
L AG
Sbjct: 235 GLCQAGN 241
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Query: 103 RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
+ +D A ++F + K PD Y +I L K + A+ELF E+ +G P
Sbjct: 167 KNSGTIDAAFEIFREMPKR-GCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKGCSPS 225
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL-ENAGEEE 215
Y+ ++ Q G +D+AM ++ MK P+ T++ L+ L +N G E
Sbjct: 226 VVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLE 279
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 118 VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177
VRK +KP++ YS +I L K ++A A E +K +GL PD +Y ++I + +
Sbjct: 288 VRKR--HKPNMVTYSTLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIR 345
Query: 178 MIDKAMETYETMKASGCTPHKLTFTILIR 206
+A + M +P+++T+++ ++
Sbjct: 346 KFQEAATYLDEMVLGQISPNRVTWSLHVK 374
>gi|224088126|ref|XP_002308333.1| predicted protein [Populus trichocarpa]
gi|222854309|gb|EEE91856.1| predicted protein [Populus trichocarpa]
Length = 1048
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 64/117 (54%)
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
LA + FN+V+ + + Y+ M+ G+ ++ ++ + L E++K + D + +T +
Sbjct: 186 LAYRFFNWVKTKDGFCHTTKTYNTMLYTAGEAREFSVVDVLLEEMEKYSCERDIKTWTIL 245
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
I Y + ++ KA+ +E M+ SGC P + + + +L +AG+ E+ + ++ +Q
Sbjct: 246 IQQYGKAKLVGKALLVHEKMRKSGCEPDVEVYEVTLHSLCDAGKGEIALEIYKEMVQ 302
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 50/96 (52%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K+V P + +Y+ +I+ + K + A E+F +K+EG +P Y+ +I Y+ +
Sbjct: 899 KQVGINPTVHVYTSLIVHFFREKLASKALEIFESMKQEGCEPTIVTYSALIRGYMDTENV 958
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+A + ++K G P T+++ + L AG+ E
Sbjct: 959 IEAWNVFHSLKTKGPAPDFKTYSMFLSCLCRAGKSE 994
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG--LDPDTRVY 166
+ AL F +V K+ + Y+ + + G+ K LF E+++ G + PDT +
Sbjct: 677 NAALHFFAWVGKQNGFCQTTETYNMAMKVSGRGKDFKHMRSLFYEMRRRGFLIPPDT--W 734
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
MI Y + G+ + A++ + MKASGC P+ T+ LI
Sbjct: 735 AIMIMQYGRTGLTEIALKIFGEMKASGCNPNDSTYKYLI 773
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+NEL AL +F + KE + P S Y++++ L ++ + EL+ E+ + G++ D+
Sbjct: 425 RRNELSKALDLFQSM-KEFGHLPTTSTYTELMQHLFRSNEYQKCCELYDEMLERGVEIDS 483
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
++ +++ I +A E +ETM+ G P +++I I+ L
Sbjct: 484 VAVMAIVAGHVRQDHISEAWEVFETMEDKGIKPTWKSYSIFIKEL 528
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEEL--FCELKKEGL 159
L R L+ AL + + V E K L Y+ L+ G ++ + E L +K+ G+
Sbjct: 847 LCRAGMLEEALSLVDQVSTE---KTTLDRYTHASLVHGLLQKGRLEEALAKVDSMKQVGI 903
Query: 160 DPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN 207
+P VYT +I + + + KA+E +E+MK GC P +T++ LIR
Sbjct: 904 NPTVHVYTSLIVHFFREKLASKALEIFESMKQEGCEPTIVTYSALIRG 951
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ ++ +I GK K + A + +++K G +PD VY + G + A+E Y
Sbjct: 238 DIKTWTILIQQYGKAKLVGKALLVHEKMRKSGCEPDVEVYEVTLHSLCDAGKGEIALEIY 297
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
+ M P+ + +L+ L +G+ V +V D I+ + PE
Sbjct: 298 KEMVQREMEPNLSLYKMLLNCLAKSGDVSAVQSVADDMIRVSQIPE 343
>gi|222612526|gb|EEE50658.1| hypothetical protein OsJ_30888 [Oryza sativa Japonica Group]
Length = 869
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 5/131 (3%)
Query: 86 RICRLLKADLLDTLTEL----RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141
R C+L+ + T L + D AL+V + KE KPD LY+ +I K
Sbjct: 231 RFCKLINNPKMSTFNMLLSVCANSQDFDGALQVMVLL-KEAGLKPDCKLYTTLISTCAKC 289
Query: 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF 201
++ E+F E+ G++P+ Y+ +I + G + KA Y M + P ++ F
Sbjct: 290 GKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVF 349
Query: 202 TILIRNLENAG 212
LI +G
Sbjct: 350 NALISACGESG 360
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 46/89 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
P +S ++ ++ + ++ A ++ LK+ GL PD ++YT +I + G +D E
Sbjct: 238 NPKMSTFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFE 297
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
+ M ++G P+ T++ LI AG+
Sbjct: 298 VFHEMVSAGIEPNVNTYSALIDGCAKAGQ 326
>gi|449508786|ref|XP_004163411.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17670-like [Cucumis sativus]
Length = 464
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Query: 114 VFNFV---RKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
V+NF+ R KPDL Y+ +I + + + A L L KEG PD VY ++
Sbjct: 214 VYNFIVEMRSSCGAKPDLVTYTILIDNVCNSNNLREAMRLVSLLYKEGFKPDCFVYNTIM 273
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
Y VG +A+ Y+ MK G P +TF LI L +G
Sbjct: 274 KGYCMVGRGAEAIGVYKKMKEVGLEPDVVTFNTLIFGLSKSG 315
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KEV +PD+ ++ +I L K+ ++ A + + G PD YT ++ + G
Sbjct: 293 KEVGLEPDVVTFNTLIFGLSKSGRVKEARNFLDIMAEMGHFPDAVTYTSLMNGMCREGNA 352
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENA 211
A+ + M+A GC P+ T+ L+ L +
Sbjct: 353 LGALSLLKEMEAKGCNPNSCTYNTLLHGLSKS 384
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMI---LMLGKNKQIAMAEELFCELKKEGLD 160
N L A+++ + + KE +KPD +Y+ ++ M+G+ A A ++ ++K+ GL+
Sbjct: 243 NSNNLREAMRLVSLLYKE-GFKPDCFVYNTIMKGYCMVGRG---AEAIGVYKKMKEVGLE 298
Query: 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
PD + +I + G + +A + M G P +T+T L+ + G
Sbjct: 299 PDVVTFNTLIFGLSKSGRVKEARNFLDIMAEMGHFPDAVTYTSLMNGMCREGN 351
>gi|116789832|gb|ABK25404.1| unknown [Picea sitchensis]
Length = 278
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P L Y+ MI + GK +++ A ++F L+K GL D + Y+ MI Y + G A +
Sbjct: 8 PSLQTYNTMISVYGKARELQNAVQIFNSLQKSGLSVDEKTYSNMISCYGKAGFFQDAAKL 67
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ M+ G P K+T+ ++ +G
Sbjct: 68 FSRMQQEGIKPGKVTYNTMLDAYARSG 94
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
EL A+++FN ++K D YS+MI GK A +LF +++EG+ P Y
Sbjct: 25 ELQNAVQIFNSLQKSGL-SVDEKTYSNMISCYGKAGFFQDAAKLFSRMQQEGIKPGKVTY 83
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
M+ Y + G+ +A E + M+ G +P T+ LI
Sbjct: 84 NTMLDAYARSGLHTRAEEVFNDMQDEGYSPDSYTYLSLI 122
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A K+F+ +++E KP Y+ M+ ++ AEE+F +++ EG PD+ Y +I
Sbjct: 64 AAKLFSRMQQE-GIKPGKVTYNTMLDAYARSGLHTRAEEVFNDMQDEGYSPDSYTYLSLI 122
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
Y +A + + M G P + F L+ AG
Sbjct: 123 CAYTNCQRFQEAEDLLKRMHRQGLAPGLVHFNHLVFAFGKAG 164
>gi|449434442|ref|XP_004135005.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17670-like [Cucumis sativus]
Length = 464
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Query: 114 VFNFV---RKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
V+NF+ R KPDL Y+ +I + + + A L L KEG PD VY ++
Sbjct: 214 VYNFIVEMRSSCGAKPDLVTYTILIDNVCNSNNLREAMRLVSLLYKEGFKPDCFVYNTIM 273
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
Y VG +A+ Y+ MK G P +TF LI L +G
Sbjct: 274 KGYCMVGRGAEAIGVYKKMKEVGLEPDVVTFNTLIFGLSKSG 315
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KEV +PD+ ++ +I L K+ ++ A + + G PD YT ++ + G
Sbjct: 293 KEVGLEPDVVTFNTLIFGLSKSGRVKEARNFLDIMAEMGHFPDAVTYTSLMNGMCREGNA 352
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENA 211
A+ + M+A GC P+ T+ L+ L +
Sbjct: 353 LGALSLLKEMEAKGCNPNSCTYNTLLHGLSKS 384
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMI---LMLGKNKQIAMAEELFCELKKEGLD 160
N L A+++ + + KE +KPD +Y+ ++ M+G+ A A ++ ++K+ GL+
Sbjct: 243 NSNNLREAMRLVSLLYKE-GFKPDCFVYNTIMKGYCMVGRG---AEAIGVYKKMKEVGLE 298
Query: 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
PD + +I + G + +A + M G P +T+T L+ + G
Sbjct: 299 PDVVTFNTLIFGLSKSGRVKEARNFLDIMAEMGHFPDAVTYTSLMNGMCREGN 351
>gi|449499684|ref|XP_004160885.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g62370-like [Cucumis sativus]
Length = 693
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 96 LDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELK 155
L + E RQ + A +R +V KP +++Y +I L + K+I AE +F +
Sbjct: 541 LIIVNEYCRQGNVTAAYHTLRKMR-QVGLKPSVAIYDSIIRCLSREKRICEAEVVFKMML 599
Query: 156 KEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ G+DPD + Y MI Y + G I +A E +E M + P +T LIR L
Sbjct: 600 EAGMDPDKKFYLTMIKGYSKNGRILEACELFEQMVENSIPPSSHIYTALIRGL 652
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 45/80 (56%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD ++Y+ +I +++++ MA + + K G PDT +I ++++G+++K
Sbjct: 255 PDKTMYTSLIHGYCRDRKMKMAMQALFRMVKIGCKPDTFTLNSLIHGFVKLGLVEKGWLV 314
Query: 186 YETMKASGCTPHKLTFTILI 205
Y+ M+ G P +TF I+I
Sbjct: 315 YKLMEDWGIQPDVVTFHIMI 334
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L Q + AL++F+ ++ Y P L L+ + L K+ + AE L E++ L P
Sbjct: 196 LCNQGFMGEALELFDIMQSTNGYPPTLHLFKTLFYGLCKSGWLVEAELLIREMEFRSLYP 255
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
D +YT +I Y + + AM+ M GC P T LI G E
Sbjct: 256 DKTMYTSLIHGYCRDRKMKMAMQALFRMVKIGCKPDTFTLNSLIHGFVKLGLVE 309
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E PD Y MI KN +I A ELF ++ + + P + +YT +I M D
Sbjct: 600 EAGMDPDKKFYLTMIKGYSKNGRILEACELFEQMVENSIPPSSHIYTALIRGLGMKNMTD 659
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
K M +G P+ + ++ L+ + GE
Sbjct: 660 KGCLYLGKMSRNGFLPNVVLYSTLMNHYLRVGE 692
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
G+ PD + MIG Y Q G +D A+ +M +S +P +T+L L G E V
Sbjct: 322 GIQPDVVTFHIMIGKYCQEGKVDSALMILNSMVSSNLSPSVHCYTVLSSALYRNGRLEEV 381
Query: 218 AAVRRDCIQYVEFPERF----LEEVYQKHRKTQVDL 249
+ + + P+ L ++Y K + Q+ L
Sbjct: 382 DGLLKGMLDNGIIPDHVLFLTLMKMYPKGHELQLAL 417
>gi|356528730|ref|XP_003532952.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g73710-like [Glycine max]
Length = 963
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 59/112 (52%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L+ Q+ A ++F + + + WY P+ Y+ ++ LGK +Q + ++ K G+ P
Sbjct: 79 LKEQSTWQRAARIFEWFKSQTWYTPNAIHYNVVLRALGKAQQWDQLRLCWLDMAKNGVLP 138
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
Y+ ++ VY + G++ +A+ M+ G P ++T +++ L++ G+
Sbjct: 139 TNNTYSMLVDVYGKAGLVQEALLWIRHMRVRGFFPDEVTMCTVVKVLKDVGD 190
>gi|115481316|ref|NP_001064251.1| Os10g0181200 [Oryza sativa Japonica Group]
gi|113638860|dbj|BAF26165.1| Os10g0181200, partial [Oryza sativa Japonica Group]
Length = 1021
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 5/131 (3%)
Query: 86 RICRLLKADLLDTLTEL----RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141
R C+L+ + T L + D AL+V + KE KPD LY+ +I K
Sbjct: 383 RFCKLINNPKMSTFNMLLSVCANSQDFDGALQVMVLL-KEAGLKPDCKLYTTLISTCAKC 441
Query: 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF 201
++ E+F E+ G++P+ Y+ +I + G + KA Y M + P ++ F
Sbjct: 442 GKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVF 501
Query: 202 TILIRNLENAG 212
LI +G
Sbjct: 502 NALISACGESG 512
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 46/89 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
P +S ++ ++ + ++ A ++ LK+ GL PD ++YT +I + G +D E
Sbjct: 390 NPKMSTFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFE 449
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
+ M ++G P+ T++ LI AG+
Sbjct: 450 VFHEMVSAGIEPNVNTYSALIDGCAKAGQ 478
>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
Length = 702
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 10/128 (7%)
Query: 89 RLLKADLL--DTLTE-LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIA 145
R +K D+L TL + L R+ +D AL+ F + +E P++ Y+ ++ L K +I
Sbjct: 140 RGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEEC--SPNVITYNTVVNGLCKANRID 197
Query: 146 MAEELFCELKK-----EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT 200
A ELF +++K G +PD Y+ +I + +DKA E ++ M+A GC P+ +T
Sbjct: 198 EALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVT 257
Query: 201 FTILIRNL 208
++ LI L
Sbjct: 258 YSSLIDGL 265
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
Query: 80 EEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
E+GF I D L L + +E + A + F + K KP++ Y+ + L
Sbjct: 283 EKGFGINI-----IDFNAMLHALWKNDEQEKACQFFERLLKS-GKKPNVVTYNVAVHGLC 336
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
K ++ A + E+ + + PD Y+ +I + + G +DKA + + M C PH +
Sbjct: 337 KAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPV 396
Query: 200 TFTILIRNL 208
TF L+
Sbjct: 397 TFMTLLHGF 405
Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+ +Y+ +I K Q+ A EL E+K+ G+ D +++ +I + G ID+A+E
Sbjct: 109 PNEIMYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQ 168
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
+++M C+P+ +T+ ++ L A
Sbjct: 169 FKSM-GEECSPNVITYNTVVNGLCKA 193
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 3/124 (2%)
Query: 99 LTELRRQNELDLALKVF-NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
+ E+ + + D A++V V K V +PD Y ++ L ++ A F ++
Sbjct: 574 VAEICKAGKPDEAVEVIEQMVLKGV--RPDEGTYVAVLRSLCGLDRVESAIAEFEKMASR 631
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
G P YT +IG M D+A +E M A+G TP T L L +AG ++L+
Sbjct: 632 GCAPGLVTYTLLIGEACSADMADEAFRIFEAMVAAGFTPQAQTMRTLSSCLRDAGYQDLL 691
Query: 218 AAVR 221
R
Sbjct: 692 VRQR 695
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
+ ++ AL++++ ++++ +PD + Y+ +I L + +++ A+E ++ + + P+ +
Sbjct: 444 DSVESALEIYHKMKRK-KRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAI 502
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
++ V + G +D+A + + GC P TF IL+ L
Sbjct: 503 CHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEEL 545
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 93 ADLLDTLTELRRQNE-LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELF 151
+ L+D L ++ R +E L+L L + KE + ++ ++ M+ L KN + A + F
Sbjct: 259 SSLIDGLCKVDRPSECLELLLHM-----KEKGFGINIIDFNAMLHALWKNDEQEKACQFF 313
Query: 152 CELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
L K G P+ Y + + G +D+A M S TP +T++ +I A
Sbjct: 314 ERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKA 373
Query: 212 G 212
G
Sbjct: 374 G 374
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 41/82 (50%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ D + YS + + K + A E+ ++ +G+ PD Y ++ + ++ A+
Sbjct: 563 FVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAI 622
Query: 184 ETYETMKASGCTPHKLTFTILI 205
+E M + GC P +T+T+LI
Sbjct: 623 AEFEKMASRGCAPGLVTYTLLI 644
>gi|215694797|dbj|BAG89988.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 930
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 5/131 (3%)
Query: 86 RICRLLKADLLDTLTEL----RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141
R C+L+ + T L + D AL+V + KE KPD LY+ +I K
Sbjct: 292 RFCKLINNPKMSTFNMLLSVCANSQDFDGALQVMVLL-KEAGLKPDCKLYTTLISTCAKC 350
Query: 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF 201
++ E+F E+ G++P+ Y+ +I + G + KA Y M + P ++ F
Sbjct: 351 GKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVF 410
Query: 202 TILIRNLENAG 212
LI +G
Sbjct: 411 NALISACGESG 421
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 46/89 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
P +S ++ ++ + ++ A ++ LK+ GL PD ++YT +I + G +D E
Sbjct: 299 NPKMSTFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFE 358
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
+ M ++G P+ T++ LI AG+
Sbjct: 359 VFHEMVSAGIEPNVNTYSALIDGCAKAGQ 387
>gi|302786806|ref|XP_002975174.1| hypothetical protein SELMODRAFT_10825 [Selaginella moellendorffii]
gi|300157333|gb|EFJ23959.1| hypothetical protein SELMODRAFT_10825 [Selaginella moellendorffii]
Length = 555
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ L++ +I LG+ ++ +A+ +F E+ GL+P + +I +Y +VG +DKA++
Sbjct: 166 KPNVVLFNTLIGTLGRAGKVTLAKGMFDEMASYGLEPSEITLSILIDMYTKVGALDKALD 225
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRRD 223
Y+T+K L + L+++ +G E L+A + R+
Sbjct: 226 VYDTIKQKKWKLDVLVYNTLLKSCVESGNIQRAESLIAEMERE 268
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 66/126 (52%), Gaps = 4/126 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D T++ LD AL V++ ++++ W K D+ +Y+ ++ ++ I AE L E+
Sbjct: 210 LIDMYTKV---GALDKALDVYDTIKQKKW-KLDVLVYNTLLKSCVESGNIQRAESLIAEM 265
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
++E PD Y ++ VY GM+ + ++ +K P +T+LI+ + AG+
Sbjct: 266 EREKQWPDHMTYGILMNVYATKGMVAEVRAMFDKLKNLAVFPKAAFYTMLIKASKQAGDF 325
Query: 215 ELVAAV 220
+ + +
Sbjct: 326 DRIPGI 331
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 1/125 (0%)
Query: 103 RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
+R ++ + A+ F+ +R E D YS MI + GK + A A +L+ ++K PD
Sbjct: 75 KRCDQAEDAIAWFHRLR-ETGVSFDGVTYSAMIDLYGKAGRTAEAMDLYQTMRKNNWKPD 133
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
+ + VY +VG + + M+ + P+ + F LI L AG+ L +
Sbjct: 134 LVSFGVIANVYSRVGDYQAILRLFRDMEQAEIKPNVVLFNTLIGTLGRAGKVTLAKGMFD 193
Query: 223 DCIQY 227
+ Y
Sbjct: 194 EMASY 198
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD +S + + Q A F L++ G+ D Y+ MI +Y + G +AM+
Sbjct: 62 PDNYTFSIFVSCSKRCDQAEDAIAWFHRLRETGVSFDGVTYSAMIDLYGKAGRTAEAMDL 121
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
Y+TM+ + P ++F ++ G+ + + + RD
Sbjct: 122 YQTMRKNNWKPDLVSFGVIANVYSRVGDYQAILRLFRD 159
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A+ ++ +RK W KPDL + + + + LF ++++ + P+ ++ +I
Sbjct: 118 AMDLYQTMRKNNW-KPDLVSFGVIANVYSRVGDYQAILRLFRDMEQAEIKPNVVLFNTLI 176
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
G + G + A ++ M + G P ++T +ILI
Sbjct: 177 GTLGRAGKVTLAKGMFDEMASYGLEPSEITLSILI 211
>gi|15222753|ref|NP_175959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75140283|sp|Q7X6A5.1|PPR81_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g55630
gi|30793841|gb|AAP40373.1| unknown protein [Arabidopsis thaliana]
gi|30794021|gb|AAP40457.1| unknown protein [Arabidopsis thaliana]
gi|110739296|dbj|BAF01561.1| hypothetical protein [Arabidopsis thaliana]
gi|332195155|gb|AEE33276.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 477
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R +L+ A K F +V PD+ Y+ MI ++ AEE+F E+ ++G P
Sbjct: 337 LSRAGKLE-ACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLP 395
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
+ Y MI + G +A + M++ GC P+ + ++ L+ NL+NAG+ V
Sbjct: 396 NVFTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVYSTLVNNLKNAGKVLEAHEVV 455
Query: 222 RDCIQ 226
+D ++
Sbjct: 456 KDMVE 460
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L N+ AL + N +R EV +P + ++ +I L + ++ + E K G
Sbjct: 299 LHHLATGNKPLAALNLLNHMR-EVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVG 357
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
PD YT MI Y+ G ++KA E ++ M G P+ T+ +IR AG+
Sbjct: 358 CTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGK 412
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 49/111 (44%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PDL Y+ ++ L + A L +++ G++P +T +I + G ++
Sbjct: 288 FSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACK 347
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERF 234
+ GCTP + +T++I + GE E + ++ + + P F
Sbjct: 348 YFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVF 398
>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 694
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 8/129 (6%)
Query: 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
LLD L + QN LD A+ +F KE +P+ Y+ +I L K ++ A++LF
Sbjct: 486 TSLLDGLC--KNQN-LDKAIALF-MKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQ 541
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL---- 208
+ +G D Y MIG + GM+D+A+ M+ +GC P +TF I+IR+L
Sbjct: 542 HILVKGCCIDVYTYNVMIGGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEIIIRSLFEKD 601
Query: 209 ENAGEEELV 217
EN E+L+
Sbjct: 602 ENDKAEKLL 610
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L + E A+K+ + +PD+ +Y+ +I L K+K + A + + E+ G
Sbjct: 244 LNGLCKIGETRCAIKLLRMIEDRST-RPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRG 302
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ PD Y+ +I + G + A M P T+TILI L G+
Sbjct: 303 IFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGK 357
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
PD+ Y+ +I L K ++ A+ L + KEG+ P+ Y+ ++ Y VG + A +
Sbjct: 339 NPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQ 398
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
+ M + P ++ I+I L
Sbjct: 399 IFHAMVQTEVNPSVCSYNIMINGL 422
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+ Y+ +I L K+ +I A +L EL G D YT ++ + +DKA+
Sbjct: 445 PNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIAL 504
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ MK G P+K T+T LI L
Sbjct: 505 FMKMKERGIQPNKYTYTALIDGL 527
Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ YS +I Q+ A L E+ + ++PD YT +I + G + +A
Sbjct: 305 PDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNL 364
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
M G P+ +T++ L+ GE
Sbjct: 365 LGVMTKEGVKPNVVTYSTLMDGYCLVGE 392
>gi|223943649|gb|ACN25908.1| unknown [Zea mays]
gi|414879225|tpg|DAA56356.1| TPA: hypothetical protein ZEAMMB73_432076 [Zea mays]
gi|414879226|tpg|DAA56357.1| TPA: hypothetical protein ZEAMMB73_432076 [Zea mays]
gi|414879227|tpg|DAA56358.1| TPA: hypothetical protein ZEAMMB73_432076 [Zea mays]
Length = 120
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 128 LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYE 187
+ Y DM+ ML +NK+I +++ +LK E + D Y +++ + +ID AME Y+
Sbjct: 1 MYFYRDMLYMLARNKKINETRQVWADLKSEDVLFDQHTYGDIVRAFCDADLIDLAMEIYD 60
Query: 188 TMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
M++S P L F ++++ L EL +++D ++ FP+
Sbjct: 61 DMRSSPDPPLSLPFRVILKGL--VPYPELREKIKQDFLEL--FPD 101
>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
Length = 631
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 4/123 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LL+ L +LRR +E A +F+ ++ PDL+ + +I L K ++ A E L
Sbjct: 446 LLNGLKKLRRTDE---ACDLFDEMQANKCM-PDLTTFGTLIDTLAKAGRMEDALEQSARL 501
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
K G P++ +Y +I + + G +DK E ++ M C P +T+TIL+ G
Sbjct: 502 VKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHT 561
Query: 215 ELV 217
+
Sbjct: 562 SMA 564
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ YS ++ GK + A A E+F ++K G PDT VY +I + G +D+A+E
Sbjct: 334 DVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELL 393
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEE 215
E M G P T+ I+I L + G E
Sbjct: 394 EDMNRKGIMPDCRTYNIVIDVLSSCGRYE 422
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL+VF ++K PD +Y+ +I LGK ++ A EL ++ ++G+ PD R Y +I
Sbjct: 354 ALEVFYNMQK-AGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVI 412
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209
V G +KA + MK +P +T+ L+ L+
Sbjct: 413 DVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLK 451
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y ++++ L K+KQ+ A LF E ++ G+ D Y+ ++ + + G KA+E
Sbjct: 299 PDVFTY-NLLIALCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEV 357
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+ M+ +GC P + + +LI L G+
Sbjct: 358 FYNMQKAGCMPDTVVYNVLISCLGKQGK 385
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD--P 161
R +LD A+ + + +R+ + +PD ++ + L + +++ A LF +++ E D P
Sbjct: 65 RAGDLDAAMGMLDDMRRGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMR-ETCDCAP 123
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASG-CTPHKLTFTILI 205
D Y +I Y + G D+A++ + +K G C P+ ++F L+
Sbjct: 124 DVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLV 168
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ + D AL +F +++E KP+ + +++ L K + A +F E+ GL D
Sbjct: 137 KAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQEMLGAGLKADV 196
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAA 219
V +I ++GM+ +A M A C T+ IL+ AG+ VA+
Sbjct: 197 NVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGILVNAHCRAGQMHEVAS 252
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ ++L + +MA EL E+ +EG P Y +I G ++ A
Sbjct: 543 PDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTL 602
Query: 186 YETMKASGCTPHKLTFTIL 204
++ M A G P T++ L
Sbjct: 603 FKEMIAKGFNPDMQTYSAL 621
>gi|297823431|ref|XP_002879598.1| hypothetical protein ARALYDRAFT_902735 [Arabidopsis lyrata subsp.
lyrata]
gi|297325437|gb|EFH55857.1| hypothetical protein ARALYDRAFT_902735 [Arabidopsis lyrata subsp.
lyrata]
Length = 497
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 75/168 (44%), Gaps = 9/168 (5%)
Query: 53 MWRSRVLSSEAIQAVHAMK-----LAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNE 107
+W SR L+ A H + +A + G S C L+ + R +
Sbjct: 117 LWMSRSLA--ATHRFHDLYRLLSFVAANPCPCSSGIFS--CPELEPIFRSAIDAYCRAGK 172
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
+D AL F+ +++ + KP++ +Y+ ++ K+ + A + + KE PD +
Sbjct: 173 MDYALLAFDTMKRLIDGKPNVGVYNTVVNGYVKSGDMDKALRFYQRMGKERAKPDVCTFN 232
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+I Y + D A++ + MK GC P+ ++F LIR + G+ E
Sbjct: 233 TLINGYCRSSKFDLALDLFREMKEKGCEPNVVSFNTLIRGFLSRGKIE 280
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ ++D AL+ + + KE KPD+ ++ +I ++ + +A +LF E+K++G +P+
Sbjct: 205 KSGDMDKALRFYQRMGKER-AKPDVCTFNTLINGYCRSSKFDLALDLFREMKEKGCEPNV 263
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ +I +L G I++ ++ M GC + T IL+ L G
Sbjct: 264 VSFNTLIRGFLSRGKIEEGIKMAYEMIEIGCRFSEATCEILVDGLCREG 312
>gi|255553861|ref|XP_002517971.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542953|gb|EEF44489.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1029
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L+ Q + ++VF F + Y P++ Y+ ++ LG+ ++ + E+ K G+ P
Sbjct: 155 LKEQRNWERMVRVFEFFKSRKDYVPNVIHYNIVLRALGRAQKWDDLRRCWIEMAKSGVLP 214
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
Y ++ VY + G++ +A+ + MK G P ++T +++ L++AGE + +
Sbjct: 215 TNNTYGMLVDVYGKAGLVTEALLWIKHMKLRGLFPDEVTMNTVVKVLKDAGEFDRAHSFY 274
Query: 222 RD-CIQYVEFPE 232
+D CI +E +
Sbjct: 275 KDWCIGKIELDD 286
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D ++ MI G + ++ AE L +++ G+ PDTR Y + +Y G ID A++ Y
Sbjct: 376 DTITFNTMIYTCGSHGHLSEAETLLNKMEDRGVSPDTRTYNIFLSLYADEGNIDAAIKCY 435
Query: 187 ETMKASGCTPHKLTFTILIRNL 208
+ ++ G P ++ ++ L
Sbjct: 436 KKIREVGLLPDTVSHRAILHEL 457
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A VF R V K D+ Y+ MI GK K A LF ++ G PD Y +I
Sbjct: 535 AEAVFYRKRDLVGQKTDILEYNVMIKAYGKGKLYEKAFTLFRSMRHHGTWPDECTYNSLI 594
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
++ ++D+A + M+ G P TF+ +I G+ A V ++ ++
Sbjct: 595 QMFSGADLMDQARDLLTEMQGVGFKPQCATFSSIIACYARLGQLSDAAGVYQEMVK 650
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 43/97 (44%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
DL Y+ I G + +I A F +++ EGL+PD ++ Y + GM++ Y
Sbjct: 898 DLFAYNVAIFAYGSSGEIDKALNTFMKMQDEGLEPDLVTSICLVYCYGKAGMVEGVKRIY 957
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
+K P F ++ E+A +L V ++
Sbjct: 958 SQLKYRDIKPSDSAFKAVVDAYEDANRHDLAELVNQE 994
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ + MI + I+ AE +F L+++G D Y M+ +Y +GM+D+A++
Sbjct: 725 PDIIASNSMISLYADLGMISEAELVFNNLREKG-SADGVSYATMMYLYKGMGMLDEAIDV 783
Query: 186 YETMKASG 193
E MK SG
Sbjct: 784 AEEMKLSG 791
>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
Length = 1060
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 104 RQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
RQ + A ++F+ + K+++ P + +Y+ +I L +I+ AE +F ++ G+ P+
Sbjct: 205 RQGDFLKAFRLFDEMIEKKIF--PTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPN 262
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAA 219
Y M+ Y ++ + KA+E Y M G P+ +TF ILI L +E+V+A
Sbjct: 263 LYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGL--CKTDEMVSA 317
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ YS +I L ++ A+ L E+KK+G P+ Y +I Y + G ++KA+E
Sbjct: 366 PDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEV 425
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE---------EELVAAVRRDCIQYV-----EFP 231
M G P+ +TF+ LI AG+ E ++ + D + Y F
Sbjct: 426 CSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFK 485
Query: 232 ERFLEEVYQKHRKTQ 246
+ +E ++ H++ Q
Sbjct: 486 DGNTKEAFRLHKEMQ 500
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ +S +I K ++ A L+ E+ +GL PD YT +I + + G +A
Sbjct: 435 EPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFR 494
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
++ M+ +G P+ T + LI L G
Sbjct: 495 LHKEMQEAGLHPNVFTLSCLIDGLCKDG 522
>gi|356513567|ref|XP_003525484.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Glycine max]
Length = 857
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 65/138 (47%), Gaps = 5/138 (3%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
D E ++ + +L++F ++++++W KP+ +++ MI +LG+ + E+F E
Sbjct: 100 DFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIHTIMITLLGREGLLDKCREVFDE 159
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ G+ YT +I Y + G ++E MK +P LT+ +I G
Sbjct: 160 MPSNGVVRTVYSYTAIINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINACARGGL 219
Query: 214 E-----ELVAAVRRDCIQ 226
+ L A +R + IQ
Sbjct: 220 DWEGLLGLFAEMRHEGIQ 237
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD++ YS ++ GK ++ EL E++ G PD Y ++ Y ++G I +AM
Sbjct: 273 PDINTYSYLVQTFGKLNRLEKVSELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGV 332
Query: 186 YETMKASGCTPHKLTFTILIR 206
+ M+A+GC + T+++L+
Sbjct: 333 FRQMQAAGCVANAATYSVLLN 353
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y +I GK A+++ + ++G+ P ++ YT +I + Q + ++A+
Sbjct: 412 EPNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAALYEEALV 471
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ TM G P T+ LI G
Sbjct: 472 MFNTMNEVGSNPTVETYNSLIHAFARGG 499
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209
LF E++ EG+ PD Y ++G G+ D+A + TM SG P T++ L++
Sbjct: 227 LFAEMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFG 286
Query: 210 NAGEEELVAAVRRD 223
E V+ + R+
Sbjct: 287 KLNRLEKVSELLRE 300
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL +FN EV P + Y+ +I + AE + + + GL D + +I
Sbjct: 469 ALVMFN-TMNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVI 527
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR-----NLENAGEEEL 216
+ Q G ++A+++Y M+ + C P++LT ++ L + GEE+
Sbjct: 528 EAFRQGGQYEEAVKSYVEMEKANCEPNELTLEAVLSIYCSAGLVDEGEEQF 578
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 43/86 (50%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
E K D+ ++ +I + Q A + + E++K +P+ ++ +Y G++
Sbjct: 512 NESGLKRDVHSFNGVIEAFRQGGQYEEAVKSYVEMEKANCEPNELTLEAVLSIYCSAGLV 571
Query: 180 DKAMETYETMKASGCTPHKLTFTILI 205
D+ E ++ +KASG P + + +++
Sbjct: 572 DEGEEQFQEIKASGILPSVMCYCMML 597
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
+ + YS ++ + GK+ + +LF E+K DPD Y +I V+ + G + + +
Sbjct: 344 NAATYSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLF 403
Query: 187 ETMKASGCTPHKLTFTILI 205
M P+ T+ LI
Sbjct: 404 HDMAEENVEPNMQTYEGLI 422
>gi|297736717|emb|CBI25753.3| unnamed protein product [Vitis vinifera]
Length = 728
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 4/152 (2%)
Query: 70 MKLAKS--SSKLEEGFQSRICRLLKADLL--DTLTELRRQNELDLALKVFNFVRKEVWYK 125
+K+A+S S + E S++ R L +L D + L + AL F F RK +
Sbjct: 114 VKIAESLDSCEATEEDVSQVLRCLGDKILEQDAVIVLNNMTNPETALLAFGFFRKRLKPS 173
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
++ LY+ + + K + + AE+LF E+ + G+ PD ++ +I + +KA+E
Sbjct: 174 REVILYNVTLKVFRKCRNLDRAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNKAVEW 233
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELV 217
+E M GC P +T++ +I AG ++
Sbjct: 234 FEKMPEFGCHPDDVTYSAMIDAYGRAGNVDMA 265
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 56/139 (40%), Gaps = 37/139 (26%)
Query: 104 RQNELDLALKVFNFVRKEVW----------------------------------YKPDLS 129
R +D+ALK+++ R E W KP+L
Sbjct: 258 RAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVYEEMKALGVKPNLV 317
Query: 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM 189
+Y+ ++ +G+ K+ A+ ++ E+ GL P Y ++ Y + + A+ Y+ M
Sbjct: 318 IYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYAALLRAYGRARYAEDALIVYKEM 377
Query: 190 KASG---CTPHKLTFTILI 205
K G C P TF+ LI
Sbjct: 378 KEKGSGNCMPDSWTFSSLI 396
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD YS MI G+ + MA +L+ + E D ++ +I +Y G D +
Sbjct: 244 PDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNV 303
Query: 186 YETMKASGCTPHKLTFTILI 205
YE MKA G P+ + + L+
Sbjct: 304 YEEMKALGVKPNLVIYNTLL 323
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
TL R+ LD A K+F+ + E KPD +S +I + A E F ++ +
Sbjct: 182 TLKVFRKCRNLDRAEKLFDEML-ERGVKPDNITFSTIISCARVSSLPNKAVEWFEKMPEF 240
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
G PD Y+ MI Y + G +D A++ Y+ + +TF+ LIR
Sbjct: 241 GCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIR 289
>gi|242088279|ref|XP_002439972.1| hypothetical protein SORBIDRAFT_09g023670 [Sorghum bicolor]
gi|241945257|gb|EES18402.1| hypothetical protein SORBIDRAFT_09g023670 [Sorghum bicolor]
Length = 377
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 67/129 (51%), Gaps = 5/129 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
+LD L + R +E+ +K+ +E+ + PD+ Y+ + L + ++ + + F E+
Sbjct: 227 VLDMLGKAGRVDEMLHEVKLM----EELGHFPDIVTYNTLTNCLRRLGRLDLCKRFFGEM 282
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
+ G+ PD R YT +I + + G I A+E ++ MK S P + LI NL+ AG+
Sbjct: 283 LERGIAPDLRTYTALIDSFGRSGHITDALEMFQKMKKSH-QPSVYVYRALISNLKKAGQF 341
Query: 215 ELVAAVRRD 223
EL + D
Sbjct: 342 ELAEKLTED 350
>gi|358345906|ref|XP_003637015.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|358347053|ref|XP_003637577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502950|gb|AES84153.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503512|gb|AES84715.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 823
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 60/103 (58%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL +F + +K+ Y+ ++ Y+ M +LGK ++ + E L+ E+ + G+ P Y +I
Sbjct: 125 ALMIFEWFKKKGCYELNVIHYNIMFWILGKERKWRVLESLWNEMNENGVVPVNSTYGTLI 184
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
VY + G+I++A+ M++ G P ++T ++++ + AGE
Sbjct: 185 DVYSKGGLIEEALAWLLRMQSEGMEPDEVTMGVVVQLYKRAGE 227
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ +I +L K+ I +A + F ++K+ L+PD Y ++ Y M+ +A E
Sbjct: 340 PDTRTYNILISVLVKHNNINLATKYFAKMKEAFLEPDVVSYRTLLYAYSTRKMVQEAEEI 399
Query: 186 YETMKASGCTPHKLTFTILIR 206
+ M G + T + L R
Sbjct: 400 VQEMDERGLKIDEFTQSALTR 420
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ +I GK QI + E+F + K+G+ T + MI +Y G I + + M+
Sbjct: 275 YNTLIDTYGKAGQIRVVYEIFARMIKQGVVLTTVTFNTMIHLYGNHGRIREVSSLLKRME 334
Query: 191 ASGCTPHKLTFTILI 205
C P T+ ILI
Sbjct: 335 ELRCLPDTRTYNILI 349
Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ L + N ++LA K F + KE + +PD+ Y ++ K + AEE+ E+ + G
Sbjct: 349 ISVLVKHNNINLATKYFAKM-KEAFLEPDVVSYRTLLYAYSTRKMVQEAEEIVQEMDERG 407
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKA 182
L D + + +Y++ M++K+
Sbjct: 408 LKIDEFTQSALTRMYVESNMLEKS 431
>gi|12324355|gb|AAG52147.1|AC022355_8 hypothetical protein; 57683-56685 [Arabidopsis thaliana]
Length = 332
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 1/115 (0%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ +S +I K K++ E+FCE+ + G+ +T YT +I + QVG +D A +
Sbjct: 214 PDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDL 273
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVYQ 240
M +SG P+ +TF ++ +L + E A+ D +Q E R ++ ++
Sbjct: 274 LNVMISSGVAPNYITFQSMLASLCSKKELRKAFAILED-LQKSEVCPRIVQAKFK 327
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
PD+ +S +I L K +++ AEE++ ++ + G+ P T Y MI + + ++ A
Sbjct: 143 NPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKR 202
Query: 185 TYETMKASGCTPHKLTFTILIRN 207
++M + C+P +TF+ LI
Sbjct: 203 MLDSMASKSCSPDVVTFSTLING 225
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E K + +Y+ +I L K+ A+ LF E+ +G+ PD Y+ MI + + G
Sbjct: 68 EETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRW 127
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFP 231
A + M P +TF+ LI L G+ + D ++ FP
Sbjct: 128 TDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFP 179
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 41/80 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ YS MI ++ + AE+L ++ + ++PD ++ +I ++ G + +A E
Sbjct: 109 PDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEI 168
Query: 186 YETMKASGCTPHKLTFTILI 205
Y M G P +T+ +I
Sbjct: 169 YGDMLRRGIFPTTITYNSMI 188
>gi|224083888|ref|XP_002307160.1| predicted protein [Populus trichocarpa]
gi|222856609|gb|EEE94156.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 72/136 (52%), Gaps = 6/136 (4%)
Query: 80 EEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
EEGFQ I + + LD L +++ E+D ALK+F + + Y PD+ Y+ +I L
Sbjct: 457 EEGFQPDI--VAYSACLDGLIKIQ---EVDQALKLFQDICAQ-GYCPDVIAYNILIKGLC 510
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
K ++IA A+ L E++++GL P Y +I + +++AM M P+ +
Sbjct: 511 KTQRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGLCKTDHLEEAMLFLSMMIEKEREPNVI 570
Query: 200 TFTILIRNLENAGEEE 215
T++ LI L NAG +
Sbjct: 571 TYSTLINGLCNAGRPD 586
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
E D AL VFN + W D ++S ++L K ++ A EL ++++ + + + +
Sbjct: 116 EFDKALDVFNEIHDRGWV--DEYVFSILVLAFSKWGKVDKACELIETMEEKNVRLNKKTF 173
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+I +++ +DKA+ ++ MK SG TP + ++I L
Sbjct: 174 CSLIYGFVKESRVDKALHLFDKMKKSGFTPDISLYDVIIGGL 215
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 81/219 (36%), Gaps = 50/219 (22%)
Query: 54 WRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALK 113
W + S + A + +L E + + RL K + +++ +D AL
Sbjct: 132 WVDEYVFSILVLAFSKWGKVDKACELIETMEEKNVRLNKKTFCSLIYGFVKESRVDKALH 191
Query: 114 VFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY 173
+F+ ++K + PD+SLY +I L NK + A L+ E+K + PD ++ T++I +
Sbjct: 192 LFDKMKKS-GFTPDISLYDVIIGGLCVNKDVKKALCLYSEMKGFKIQPDVKIVTKLISSF 250
Query: 174 ---------------------------------LQVGMIDKAMETYETMKASGCT----- 195
+ G + KA + + C
Sbjct: 251 SKEEELTCFFEEMHEDMDPKASTLLYNSVLNSLVDNGSVHKAYHLLQAITIGNCIGDGEI 310
Query: 196 -----------PHKLTFTILIRNLENAGEEELVAAVRRD 223
P+ TF+I+I L G+ +L + RD
Sbjct: 311 GKLFRGKAMVPPNSTTFSIVINGLIKTGDLDLAVGLFRD 349
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
+ L + +LDLA+ +F + + + KPDL LY+++I L + ++ + L E+++
Sbjct: 330 VINGLIKTGDLDLAVGLFRDMAR-IGCKPDLLLYNNLIDGLCTSNRLQESCGLLQEMEES 388
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
G++P + + G + I A+ + M+ G P T L++ L G+E
Sbjct: 389 GIEPTSFTNNCIFGCLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCKHGKE 445
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 123 WYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKA 182
W K SL + L K+ + A + ++ +EG PD Y+ + +++ +D+A
Sbjct: 428 WIKHSTSLVKE----LCKHGKEVEACKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQA 483
Query: 183 METYETMKASGCTPHKLTFTILIRNL 208
++ ++ + A G P + + ILI+ L
Sbjct: 484 LKLFQDICAQGYCPDVIAYNILIKGL 509
>gi|359495626|ref|XP_002269600.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic [Vitis vinifera]
Length = 701
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 4/152 (2%)
Query: 70 MKLAKS--SSKLEEGFQSRICRLLKADLL--DTLTELRRQNELDLALKVFNFVRKEVWYK 125
+K+A+S S + E S++ R L +L D + L + AL F F RK +
Sbjct: 114 VKIAESLDSCEATEEDVSQVLRCLGDKILEQDAVIVLNNMTNPETALLAFGFFRKRLKPS 173
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
++ LY+ + + K + + AE+LF E+ + G+ PD ++ +I + +KA+E
Sbjct: 174 REVILYNVTLKVFRKCRNLDRAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNKAVEW 233
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELV 217
+E M GC P +T++ +I AG ++
Sbjct: 234 FEKMPEFGCHPDDVTYSAMIDAYGRAGNVDMA 265
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD YS MI G+ + MA +L+ + E D ++ +I +Y G D +
Sbjct: 244 PDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNV 303
Query: 186 YETMKASGCTPHKLTFTILI 205
YE MKA G P+ + + L+
Sbjct: 304 YEEMKALGVKPNLVIYNTLL 323
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
TL R+ LD A K+F+ + E KPD +S +I + A E F ++ +
Sbjct: 182 TLKVFRKCRNLDRAEKLFDEML-ERGVKPDNITFSTIISCARVSSLPNKAVEWFEKMPEF 240
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
G PD Y+ MI Y + G +D A++ Y+ + +TF+ LIR
Sbjct: 241 GCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIR 289
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 60/154 (38%), Gaps = 34/154 (22%)
Query: 104 RQNELDLALKVFNFVRKEVW----------------------------------YKPDLS 129
R +D+ALK+++ R E W KP+L
Sbjct: 258 RAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVYEEMKALGVKPNLV 317
Query: 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM 189
+Y+ ++ +G+ K+ A+ ++ E+ GL P Y ++ Y + + A+ Y+ M
Sbjct: 318 IYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYAALLRAYGRARYAEDALIVYKEM 377
Query: 190 KASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
K G + + L+ + G E AA+ D
Sbjct: 378 KEKGLELSVVLYNTLLAMCADVGYTEEAAAIFED 411
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P Y+ ++ G+ + A ++ E+K++GL+ +Y ++ + VG ++A
Sbjct: 348 QPSWGTYAALLRAYGRARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAA 407
Query: 185 TYETMKASG-CTPHKLTFTILI 205
+E MK+SG C P TF+ LI
Sbjct: 408 IFEDMKSSGNCMPDSWTFSSLI 429
>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
Length = 1059
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I K+K++ +LFCE+ +GL D Y +I Y Q G ++ A +
Sbjct: 858 PDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKV 917
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ M G P +T+ IL+ L N G+ E
Sbjct: 918 FNRMVDCGVPPDIVTYNILLDCLCNNGKIE 947
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 70/133 (52%), Gaps = 5/133 (3%)
Query: 76 SSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMI 135
+S ++ G++ + ++ L+D L + ++++AL++ N + K+ DL Y+ ++
Sbjct: 159 ASMVKSGYEPNV--VVYNTLIDCLC---KNGDVNIALELLNEMEKKGRLAADLVTYNTLL 213
Query: 136 LMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCT 195
L + + A + ++ K ++PD +T +I +++ G +D+A E Y+ M S
Sbjct: 214 TGLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIG 273
Query: 196 PHKLTFTILIRNL 208
P+ +T+ LI L
Sbjct: 274 PNTVTYNSLINGL 286
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A K F+ + + + P++ Y+ +I K++++ +LF + +EGL DT Y +I
Sbjct: 295 AKKTFDLMASKGCF-PNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLI 353
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
Y QVG + A + + M + G TP +T IL+ L GE
Sbjct: 354 HGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGE 396
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
PD+ ++ +I K + A+EL+ ++ + + P+T Y +I G + A +
Sbjct: 238 NPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKK 297
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
T++ M + GC P+ +T+ LI
Sbjct: 298 TFDLMASKGCFPNVVTYNTLINGF 321
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
E+ A+ FN +R Y ++ Y+ MI L K ++ A ELFC L EG+ PD R
Sbjct: 394 NGEIGSAMVKFNDMRSGEKYLGIVA-YNIMIHGLCKADKVEEAWELFCRLPVEGVKPDAR 452
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASG 193
YT MI + G +A E + MK G
Sbjct: 453 TYTIMILGLCKNGPRREADELFRRMKEDG 481
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 6/145 (4%)
Query: 69 AMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDL 128
++ LA ++ GFQ I L LL+ + R E A+ + + + E+ +P++
Sbjct: 667 SLALALLGKMMKLGFQPSIVTL--GSLLNGFCQGNRFQE---AVSLVDSM-AELGLEPNV 720
Query: 129 SLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYET 188
+Y+ +I L KN+ + A E+F ++K+G+ D Y +I G A
Sbjct: 721 VIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRD 780
Query: 189 MKASGCTPHKLTFTILIRNLENAGE 213
M P+ + FT LI G
Sbjct: 781 MVKRKIDPNVIFFTALIDTFVKEGN 805
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 2/132 (1%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R + L LAL + + K + Y P + + ++ +I A L + K G +P+
Sbjct: 112 RCSRLSLALSILGKMMK-LGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGYEPNV 170
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL-TFTILIRNLENAGEEELVAAVRR 222
VY +I + G ++ A+E M+ G L T+ L+ L +GE A + R
Sbjct: 171 VVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILR 230
Query: 223 DCIQYVEFPERF 234
D + P+ F
Sbjct: 231 DMTKRRINPDVF 242
>gi|449463822|ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49730-like [Cucumis sativus]
Length = 641
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LLD L + + A +F +R V + P+L ++ ++ + +I A+ + ++
Sbjct: 218 LLDALC---KNGSVKEAASLFEDMR--VRFNPNLRHFTSLLYGWCREGKIMEAKHVLVQI 272
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
K+ G +PD VY ++G Y Q G + A + MK C P+ +FTILI++
Sbjct: 273 KEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSF 326
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 56/115 (48%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE ++PD+ +Y++++ + ++ A +L E+KK P+ +T +I + + +
Sbjct: 273 KEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKM 332
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERF 234
D+AM + M+ SGC +T+T LI G + + D IQ P +
Sbjct: 333 DEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQL 387
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG---LDPDTRV 165
+L + F + K+ Y+ +Y MI LGK +Q L E++KE L P+ V
Sbjct: 122 NLGYRFFVWASKQPGYRHSYEVYKAMIKTLGKMRQFGAVWALIEEMRKENPYMLTPE--V 179
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
+ ++ + V M+ KA+E + M GC P + F L+ L G + A++ D
Sbjct: 180 FIVLMRRFASVRMVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFED 237
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K+V P+ + ++ +I K +++ A +F E++ G + D YT +I + + G
Sbjct: 308 KKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNT 367
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVE 229
DKA E + M G P +L++ ++ + + +EEL +C++ +E
Sbjct: 368 DKAYEILDDMIQKGHDPSQLSYLCIM--MAHEKKEEL-----EECMELIE 410
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
++ EL+ +++ +RK + PDL++Y+ MI ++ K + A L+ E++ GL+P
Sbjct: 398 KKEELEECMELIEEMRK-IGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLNPGL 456
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASG 193
Y M+ +L G + +A + ++ M G
Sbjct: 457 DTYILMVHGFLSQGCLVEACDYFKEMVERG 486
>gi|356575482|ref|XP_003555869.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Glycine max]
Length = 576
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 51/99 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ Y+ ++ + AEE+F ++++ GL+PD Y ++ Y + G A E
Sbjct: 292 KPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYAYNALMEAYSRAGYPYGAAE 351
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
+ M+ GC P + ++ IL+ AG ++ AV +D
Sbjct: 352 IFSLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAVFKD 390
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 47/99 (47%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y D+S Y+ +I G+ I E+LF L +GL PD +T IG Y + + K +
Sbjct: 466 YVADISTYNILINRYGQAGFIERMEDLFQLLPSKGLKPDVVTWTSRIGAYSKKKLYLKCL 525
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
E +E M GC P T +L+ N + E V V R
Sbjct: 526 EIFEEMIDDGCYPDGGTAKVLLAACSNEDQTEQVTTVIR 564
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L + D A ++F ++K+ KP Y+ +I + GK + MA +LF E+
Sbjct: 232 INGLMKGGNSDKAEEIFKRMKKDAC-KPTTETYTMLINLYGKAGKSFMALKLFHEMMSHD 290
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
P+ YT ++ + + G+ +KA E +E M+ +G P + L+ AG
Sbjct: 291 CKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYAYNALMEAYSRAG 344
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%)
Query: 147 AEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
AE +F E++ GL VY I ++ G DKA E ++ MK C P T+T+LI
Sbjct: 209 AEAVFAEMRNYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKPTTETYTMLIN 268
Query: 207 NLENAGE 213
AG+
Sbjct: 269 LYGKAGK 275
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 41/93 (44%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E +PD+ Y+ ++ + A E+F ++ G +PD Y ++ Y + G
Sbjct: 322 QEAGLEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQ 381
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
D A ++ MK G TP + +L+ G
Sbjct: 382 DDAEAVFKDMKRVGITPTMKSHMVLLSAYSKMG 414
>gi|147859909|emb|CAN83144.1| hypothetical protein VITISV_040783 [Vitis vinifera]
Length = 724
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ MI GK + A F ++ EG+ PD + +I + + G +KA E
Sbjct: 500 PDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEEL 559
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+E M+ SGC+P T+ I+I + GE+E
Sbjct: 560 FEAMQESGCSPCTTTYNIMINSF---GEQE 586
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L D + + +++ A+ V+ P + +I LG + AE +F EL
Sbjct: 330 LNDIIVGFAKSGDVNRAMSFLAMVQGN-GLSPKTATLVAVITALGNAGRTEEAEAIFEEL 388
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
K+ GL P TR Y ++ Y++ G + A M+ SG +P + T+++LI NAG
Sbjct: 389 KEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRW 448
Query: 215 E 215
E
Sbjct: 449 E 449
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A+ F +R + KP + + + +I G++++ A A + +K+ L PD YT ++
Sbjct: 619 AINAFRVMRAD-GLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLM 677
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHK 198
++V DK YE M SGCTP +
Sbjct: 678 KALIRVEKFDKVPAVYEEMTLSGCTPDR 705
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQI--AMAEELFCELKKEGLDP 161
R ++L+ AL + + +R++ Y D YS +I L + + +M ++++ E++ + ++
Sbjct: 267 RNDDLEKALNLMSRMRRD-GYPSDFVNYSFIIQSLTRTNKSDSSMLQKIYAEIESDKIEL 325
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
D ++ ++I + + G +++AM ++ +G +P T +I L NAG E A+
Sbjct: 326 DGQLLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAI 384
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 62/146 (42%), Gaps = 1/146 (0%)
Query: 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
A L+ +T L + A +F + KE P Y+ ++ K + AE +
Sbjct: 363 ATLVAVITALGNAGRTEEAEAIFEEL-KEGGLMPRTRAYNALLKGYVKTGSLKDAESIVS 421
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
E+++ G PD Y+ +I Y G + A + M+ASG P+ F+ ++ + + G
Sbjct: 422 EMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRG 481
Query: 213 EEELVAAVRRDCIQYVEFPERFLEEV 238
+ + V R+ P+R V
Sbjct: 482 KWQKSFQVLREMRNSGVSPDRHFYNV 507
>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
Length = 768
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D Y+ +I L K+K++ A +L ++ EGL PD Y ++ + + G I KA +
Sbjct: 517 DSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIV 576
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
+TM +SGC P +T+ LI L AG ++ + + R
Sbjct: 577 QTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLR 612
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 104 RQNELDLALKVFNFVRKEV--WYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
+Q +D AL +F+++ V ++PD Y+ ++ L K A E+ + GLDP
Sbjct: 285 KQGRIDQAL---SFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDP 341
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
D Y +I ++G I++A++ + M + C+P+ +T+ +I +L
Sbjct: 342 DIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSL 388
Score = 43.5 bits (101), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 116 NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175
+ VR+ + + D+S ++ +I L K Q+ A + E+ GL PD +T ++ Y++
Sbjct: 193 SMVRRRIRH--DVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIE 250
Query: 176 VGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
G +D A+ E M GC +T +LI G
Sbjct: 251 GGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQG 287
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
LRRQ + AL+VFN+ K+ + P S+Y +++ LGK + E+K G +
Sbjct: 71 LRRQTDEVAALRVFNWASKQPNFVPSSSVYEEILRKLGKAGSFEYMRRVLEEMKLSGCEF 130
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKAS-GCTPHKLTFTILIRNLENAGEEELV 217
D ++ + Y + + D+ + + M+ P + +L+ L +A + +LV
Sbjct: 131 DRGIFLIFVESYGKFELYDEVVGIVKVMEDEYRIKPDTRFYNVLLNVLVDANKLKLV 187
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 14/154 (9%)
Query: 85 SRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMI--LMLGKNK 142
SR C ++ L ++N +D A ++ + + PD+ ++ +I L L N
Sbjct: 371 SRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSK-GILPDVCTFNSLIQGLCLSSNH 429
Query: 143 QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFT 202
+ AM +LF E+K +G PD Y +I +++A+ + M+ +GC + + +
Sbjct: 430 KSAM--DLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYN 487
Query: 203 ILI------RNLENAGE---EELVAAVRRDCIQY 227
LI + +E A E E + V RD + Y
Sbjct: 488 TLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTY 521
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
K +I A E EG PD Y ++ ++G AME + M G P
Sbjct: 285 KQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIY 344
Query: 200 TFTILIRNLENAGEEE-----LVAAVRRDC 224
T+ LI L GE E L V RDC
Sbjct: 345 TYNSLISGLCKLGEIEEAVKILDQMVSRDC 374
>gi|449494638|ref|XP_004159605.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49730-like [Cucumis sativus]
Length = 664
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LLD L + + A +F +R V + P+L ++ ++ + +I A+ + ++
Sbjct: 241 LLDALC---KNGSVKEAASLFEDMR--VRFNPNLRHFTSLLYGWCREGKIMEAKHVLVQI 295
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
K+ G +PD VY ++G Y Q G + A + MK C P+ +FTILI++
Sbjct: 296 KEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSF 349
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 56/115 (48%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE ++PD+ +Y++++ + ++ A +L E+KK P+ +T +I + + +
Sbjct: 296 KEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKM 355
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERF 234
D+AM + M+ SGC +T+T LI G + + D IQ P +
Sbjct: 356 DEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQL 410
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG---LDPDTRV 165
+L + F + K+ Y+ +Y MI LGK +Q L E++KE L P+ V
Sbjct: 145 NLGYRFFVWASKQPGYRHSYEVYKAMIKTLGKMRQFGAVWALIEEMRKENPYMLTPE--V 202
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
+ ++ + V M+ KA+E + M GC P + F L+ L G + A++ D
Sbjct: 203 FIVLMRRFASVRMVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFED 260
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K+V P+ + ++ +I K +++ A +F E++ G + D YT +I + + G
Sbjct: 331 KKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNT 390
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVE 229
DKA E + M G P +L++ ++ + + +EEL +C++ +E
Sbjct: 391 DKAYEILDDMIQKGHDPSQLSYLCIM--MAHEKKEEL-----EECMELIE 433
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
++ EL+ +++ +RK + PDL++Y+ MI ++ K + A L+ E++ GL+P
Sbjct: 421 KKEELEECMELIEEMRK-IGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLNPGL 479
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASG 193
Y M+ +L G + +A + ++ M G
Sbjct: 480 DTYILMVHGFLSQGCLVEACDYFKEMVERG 509
>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g31850, chloroplastic; AltName: Full=Protein PROTON
GRADIENT REGULATION 3; Flags: Precursor
gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
Length = 1112
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%)
Query: 87 ICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAM 146
ICR + L+ + + N + A +F K++ +P L Y+ +I L + I +
Sbjct: 744 ICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEI 803
Query: 147 AEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
A+++F ++K G PD Y ++ Y + G ID+ E Y+ M C + +T I+I
Sbjct: 804 AQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVIS 863
Query: 207 NLENAGE 213
L AG
Sbjct: 864 GLVKAGN 870
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++P L YS +++ LGK + I L E++ GL P+ +T I V + G I++A
Sbjct: 219 FRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAY 278
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYV 228
E + M GC P +T+T+LI + L A + DC + V
Sbjct: 279 EILKRMDDEGCGPDVVTYTVLI--------DALCTARKLDCAKEV 315
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 54/103 (52%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L + + L+ AL +FN ++ PDL Y+ +IL LG + A +++ E+++ G
Sbjct: 1003 INGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAG 1062
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF 201
L+P+ + +I Y G + A Y+TM G +P+ T+
Sbjct: 1063 LEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTY 1105
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L + R +E L F + KE PD+ Y+ +I LGK+ ++ A LF E+
Sbjct: 967 LVDCLCMVGRVDE---GLHYFKEL-KESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEM 1022
Query: 155 KKE-GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
K G+ PD Y +I GM+++A + Y ++ +G P+ TF LIR +G+
Sbjct: 1023 KTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGK 1082
Query: 214 EELVAAV 220
E AV
Sbjct: 1083 PEHAYAV 1089
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P+ ++Y+ +I GK + A LF + KEG+ PD + Y+ ++ VG +D+ +
Sbjct: 923 RPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLH 982
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG--EEELV 217
++ +K SG P + + ++I L + EE LV
Sbjct: 983 YFKELKESGLNPDVVCYNLIINGLGKSHRLEEALV 1017
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 2/141 (1%)
Query: 76 SSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMI 135
+ +L EG CR A + + E D A +F + KE +PDL YS ++
Sbjct: 910 AKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKE-GVRPDLKTYSVLV 968
Query: 136 LMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS-GC 194
L ++ F ELK+ GL+PD Y +I + +++A+ + MK S G
Sbjct: 969 DCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGI 1028
Query: 195 TPHKLTFTILIRNLENAGEEE 215
TP T+ LI NL AG E
Sbjct: 1029 TPDLYTYNSLILNLGIAGMVE 1049
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L R+ LD A +VF + K +KPD Y ++ N+ + ++ + E+
Sbjct: 299 LIDALCTARK---LDCAKEVFEKM-KTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEM 354
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+K+G PD +T ++ + G +A +T + M+ G P+ T+ LI L
Sbjct: 355 EKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGL 408
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L + + +D A K+F KE+ KP + Y+ ++ LGKN +I A ELF + ++G
Sbjct: 545 INTLYKADRVDEAWKMF-MRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKG 603
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
P+T + + + + A++ M GC P T+ +I L G+
Sbjct: 604 CPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQ 658
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 129 SLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYET 188
SLYS + G++++ A+++F LK GL PD+ Y M+ Y +VG ID+A++
Sbjct: 474 SLYS--LAKAGRDRE---AKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSE 528
Query: 189 MKASGCTPHKLTFTILIRNLENA 211
M +GC P + LI L A
Sbjct: 529 MMENGCEPDVIVVNSLINTLYKA 551
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ ++ I +LG+ +I A E+ + EG PD YT +I +D A E
Sbjct: 255 KPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKE 314
Query: 185 TYETMKASGCTPHKLTFTILI 205
+E MK P ++T+ L+
Sbjct: 315 VFEKMKTGRHKPDRVTYITLL 335
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+L Y+ +I L + ++ A ELF ++ G+ P Y I Y + G A+ET
Sbjct: 396 PNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALET 455
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEE 214
+E MK G P+ + + +L AG +
Sbjct: 456 FEKMKTKGIAPNIVACNASLYSLAKAGRD 484
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I L +++ A+E+F ++K PD Y ++ + +D +
Sbjct: 291 PDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQF 350
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+ M+ G P +TFTIL+ L AG
Sbjct: 351 WSEMEKDGHVPDVVTFTILVDALCKAGN 378
>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
Length = 913
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 58/106 (54%), Gaps = 9/106 (8%)
Query: 121 EVWYK-------PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY 173
E+W++ DL YS +I L + + A ++ E+ + G+ PD VY M+ Y
Sbjct: 251 EIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGY 310
Query: 174 LQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL-ENAGEEELVA 218
L+ G I++ +E ++ M+ GC +++ ILIR L ENA +E ++
Sbjct: 311 LRAGRIEECLELWKVMEKEGCRT-VVSYNILIRGLFENAKVDEAIS 355
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 55/109 (50%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+KP++ YS ++ L + K++ MA L+C+ ++G PD +++ +I G ++ A+
Sbjct: 505 WKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDAL 564
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
+ Y MK C P+ +T L+ + E + + +QY P+
Sbjct: 565 QLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPD 613
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+ + D A ++ N++ + + PD+ Y +I L KN ++ A +LF E+ + G+ PD
Sbjct: 136 RKKQFDKAKELLNWMWGQG-FSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDV 194
Query: 164 RVYTEMIGVYLQVGMIDKAMETYE-TMKASGCTPHKLTFTILIRNLENAGE 213
Y +I + + G I A E +E +K P+ ++ ++I L G+
Sbjct: 195 ACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGK 245
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LL+ L E + +E + F + + P+L Y+ +I + + KQ A+EL +
Sbjct: 95 LLNALIESNKWDEAESFFLYF----ETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWM 150
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+G PD Y +I + G + A++ ++ M G TP + ILI G+
Sbjct: 151 WGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGD 209
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
D AL +F + + +P + Y+ ++ L ++ + AE F + GL P+ + Y
Sbjct: 70 DQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNI 129
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+I + + DKA E M G +P ++ LI +L G
Sbjct: 130 LIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNG 173
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D YS MI L + ++ + ++ K G P+ V +I +++ ++ A+ +
Sbjct: 403 DTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFF 462
Query: 187 ETMKASGCTPHKLTFTILIRNLENA 211
M + GC P +T+ LI L A
Sbjct: 463 GNMVSKGCFPTVVTYNTLINGLSKA 487
>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
Length = 650
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 58/106 (54%), Gaps = 9/106 (8%)
Query: 121 EVWYK-------PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY 173
E+W++ DL YS +I L + + A ++ E+ + G+ PD VY M+ Y
Sbjct: 276 EIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGY 335
Query: 174 LQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL-ENAGEEELVA 218
L+ G I++ +E ++ M+ GC +++ ILIR L ENA +E ++
Sbjct: 336 LRAGRIEECLELWKVMEKEGCRT-VVSYNILIRGLFENAKVDEAIS 380
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 58/111 (52%), Gaps = 2/111 (1%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+ + D A ++ N++ ++ + PD+ Y +I L KN ++ A +LF E+ + G+ PD
Sbjct: 161 RKKQFDKAKELLNWMWEQG-FSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDV 219
Query: 164 RVYTEMIGVYLQVGMIDKAMETYE-TMKASGCTPHKLTFTILIRNLENAGE 213
Y +I + + G I A E +E +K P+ ++ ++I L G+
Sbjct: 220 ACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGK 270
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+KP++ YS ++ L + K++ MA L+C+ ++G PD +++ +I G ++ A+
Sbjct: 530 WKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDAL 589
Query: 184 ETYETMKASGCTPHKLTFTIL------IRNLENA 211
+ Y MK C P+ +T L +R+ E A
Sbjct: 590 QLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERA 623
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LL+ L E + +E + F + + P+L Y+ +I + + KQ A+EL +
Sbjct: 120 LLNALIESNKWDEAESFFLYF----ETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWM 175
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
++G PD Y +I + G + A++ ++ M G TP + ILI G+
Sbjct: 176 WEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGD 234
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 63/142 (44%)
Query: 71 KLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSL 130
KL S++ E +++ C+ + L + + + D AL +F + + +P +
Sbjct: 57 KLVAHVSRIVELIRTQKCKCPEDVALTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRS 116
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ ++ L ++ + AE F + GL P+ + Y +I + + DKA E M
Sbjct: 117 YNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMW 176
Query: 191 ASGCTPHKLTFTILIRNLENAG 212
G +P ++ LI +L G
Sbjct: 177 EQGFSPDVFSYGTLINSLAKNG 198
Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D YS MI L + ++ + ++ K G P+ V +I +++ ++ A+ +
Sbjct: 428 DTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFF 487
Query: 187 ETMKASGCTPHKLTFTILIRNLENA 211
M + GC P +T+ LI L A
Sbjct: 488 GNMVSKGCFPTVVTYNTLINGLSKA 512
>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
Length = 695
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R E++ ALK++ +R KPDL +S +I + + ++ A E++ GL PD
Sbjct: 212 RVGEIEEALKIYKEMRHR-GIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDG 270
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+YT +IG + + G++ A+ + M GC P +T+ L+ L
Sbjct: 271 VIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGL 315
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 54/99 (54%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP + Y+ ++ L ++ A E+F E+ G+ PD R +T +IG + +VG I++A++
Sbjct: 162 KPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALK 221
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
Y+ M+ G P ++F+ LI G+ + A R+
Sbjct: 222 IYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLRE 260
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ ++ L K +++ AE L E+++ G+ PD +T +I Y G +DKA++
Sbjct: 303 PDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQL 362
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
++TM P +T+ LI + G+
Sbjct: 363 FDTMLNQRLRPDIVTYNTLIDGMCRQGD 390
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Query: 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
L L R D A +VF + + PD+ ++ +I + +I A +++ E++
Sbjct: 171 VLKGLCRSGMWDKAWEVFKEM-DDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHR 229
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
G+ PD ++ +IG++ + G +D AM M+ G P + +T++I AG
Sbjct: 230 GIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAG 284
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+++++ A K+ N + KE +PD+ Y+ +I + + A +F ++ +G++PD
Sbjct: 492 KEDKMHDAFKLLNMMEKEK-VQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDR 550
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
Y MI ++ G +A + ++ M G + T+ N++N+ E
Sbjct: 551 YTYMSMINGHVTAGNSKEAFQLHDEMLQRGKEKRRAAGTVQFVNIQNSAE 600
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ ++ M+ + A L + +GL P Y ++ + GM DKA E
Sbjct: 128 PDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEV 187
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ M G P +FTILI GE E
Sbjct: 188 FKEMDDFGVAPDVRSFTILIGGFCRVGEIE 217
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL Y+ +I K ++ A +L ++KE + PD Y +I + G + +A
Sbjct: 478 PDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWI 537
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+E M A G P + T+ +I AG +
Sbjct: 538 FEKMCAKGIEPDRYTYMSMINGHVTAGNSK 567
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E PDL ++ +I ++ A +LF + + L PD Y +I + G +
Sbjct: 332 RERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDL 391
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
DKA + ++ M + P+ +T++ILI + G+ E
Sbjct: 392 DKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVE 427
>gi|255582603|ref|XP_002532083.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528243|gb|EEF30297.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 841
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 68/125 (54%), Gaps = 4/125 (3%)
Query: 81 EGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK 140
+GF R + L+++ T + +LD AL++++ ++K ++P+ LY+ +I K
Sbjct: 385 QGFGLRSSASMYVSLIESYT---KAGKLDTALRLWDEMKK-AGFRPNYGLYTLIIESHAK 440
Query: 141 NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT 200
+ ++ +A +F ++ K G P Y+ ++ ++ G +D AM+ Y +M +G P T
Sbjct: 441 SGKLDIATSIFKDMDKAGFLPTPSTYSCLLEMHAASGQVDSAMKLYNSMTNAGLKPGLST 500
Query: 201 FTILI 205
+T L+
Sbjct: 501 YTALL 505
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 42/151 (27%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNK------------------- 142
L+ N+ D L +F + +++ WY D Y+ +L G NK
Sbjct: 189 LKIINDADGMLSLFKWAKRQTWYVVDDECYA--LLFDGLNKIRDFDGIQSLFDEMVQDSS 246
Query: 143 ---------------QIAMAEEL---FCELKK---EGLDPDTRVYTEMIGVYLQVGMIDK 181
+A AE+L FC KK G DT+ Y +I +L G+ K
Sbjct: 247 KGGISSVYAYNRVIQHLAKAEKLELSFCCFKKVQDSGCKIDTQTYNALITSFLNKGLPYK 306
Query: 182 AMETYETMKASGCTPHKLTFTILIRNLENAG 212
A E YE+M+A+ C+ T+ ++I +L +G
Sbjct: 307 AFEIYESMQAAQCSLDASTYELMIPSLAKSG 337
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
++D A+K++N + KP LS Y+ ++ +L K + +A ++ E+K G D
Sbjct: 476 SGQVDSAMKLYNSM-TNAGLKPGLSTYTALLTLLASKKLVDVAAKILLEMKAMGFSVDVS 534
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
++++ VY++ G +D A+ M +SG T +IR L
Sbjct: 535 A-SDVLMVYIKDGSVDLALRWLSFMGSSGIR----TNNFIIRQL 573
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 35/132 (26%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELK-------------------KEG-LDPDTRVY 166
D S Y MI L K+ ++ +A +LF E+K K G LD ++Y
Sbjct: 322 DASTYELMIPSLAKSGRLDVAFKLFQEMKERKIRPSFGIFSSLVDSMGKSGRLDTSMKIY 381
Query: 167 TEMIGV---------------YLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
EM G Y + G +D A+ ++ MK +G P+ +T++I + +
Sbjct: 382 MEMQGFGLRSSASMYVSLIESYTKAGKLDTALRLWDEMKKAGFRPNYGLYTLIIESHAKS 441
Query: 212 GEEELVAAVRRD 223
G+ ++ ++ +D
Sbjct: 442 GKLDIATSIFKD 453
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ +LD+A +F + K + P S YS ++ M + Q+ A +L+ + GL P
Sbjct: 440 KSGKLDIATSIFKDMDK-AGFLPTPSTYSCLLEMHAASGQVDSAMKLYNSMTNAGLKPGL 498
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASG 193
YT ++ + ++D A + MKA G
Sbjct: 499 STYTALLTLLASKKLVDVAAKILLEMKAMG 528
>gi|297733858|emb|CBI15105.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD++ YS ++ GK ++ EL E++ G PD Y ++ + Q G I +AM
Sbjct: 43 PDITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGV 102
Query: 186 YETMKASGCTPHKLTFTILIR 206
+ M+ +GC P+ T++IL+
Sbjct: 103 FRQMQGAGCVPNAATYSILLN 123
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y +I GK A+++ + ++G+ P ++ YT +I Y Q + ++A+
Sbjct: 182 EPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALV 241
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ TM G P T+ LI+ G
Sbjct: 242 AFNTMNEVGSKPTVETYNSLIQMFAKGG 269
>gi|242036493|ref|XP_002465641.1| hypothetical protein SORBIDRAFT_01g042790 [Sorghum bicolor]
gi|241919495|gb|EER92639.1| hypothetical protein SORBIDRAFT_01g042790 [Sorghum bicolor]
Length = 691
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 68/130 (52%), Gaps = 12/130 (9%)
Query: 95 LLDTLTELRRQNELDLALKVF---NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELF 151
+L+T R + L LAL+ F VRK+V LY+ ++ +L K + + E L+
Sbjct: 134 VLNTAAAARPETAL-LALRWFLGNAKVRKKV------ILYNVVLNLLRKKRHWSETEALW 186
Query: 152 CELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
E+ ++G+ PD ++ +I G+ KA+E ++ M GC+P LT++ +I A
Sbjct: 187 AEMLRDGVQPDNATFSTVISCARACGLHSKAVEWFDKMPEFGCSPDMLTYSAVIDAYGRA 246
Query: 212 GEEELVAAVR 221
G E AA+R
Sbjct: 247 GNSE--AALR 254
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD YS M+ + + AE + E+ + G P+ V T +I Y +VG D ++
Sbjct: 408 KPDSWSYSSMVTLYSSTANVLGAEGILNEMVEAGFKPNIFVLTSLIRCYGKVGRTDDVVK 467
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
++ ++ P L+ N EEL + CI+
Sbjct: 468 SFGMLQDLCIIPDDRFCGCLLSVAANTPVEELGKVI--SCIE 507
>gi|428176291|gb|EKX45176.1| hypothetical protein GUITHDRAFT_108820 [Guillardia theta CCMP2712]
Length = 700
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
K L + I + G+ KQ++ A F ++ EGL P YT +I Y++ G I A
Sbjct: 94 KKRLQFLNKKISLHGQRKQLSKALRFFQTIQDEGLKPTDYSYTSIINAYVRNGDIAGAAR 153
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
+E MK+ G P+ +TFT L++ GE
Sbjct: 154 MFEEMKSKGIRPNVVTFTTLMKGYCTVGE 182
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
+ +L AL+ F ++ E D S Y+ +I +N IA A +F E+K +G+ P+
Sbjct: 110 RKQLSKALRFFQTIQDEGLKPTDYS-YTSIINAYVRNGDIAGAARMFEEMKSKGIRPNVV 168
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGC--TPHKLTFTILIRNLENAG 212
+T ++ Y VG + +A + E M G +P+ T +R G
Sbjct: 169 TFTTLMKGYCTVGEMGEANKVLEDMSKEGSRISPNIRTINTFLRGCVRTG 218
>gi|225457536|ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial [Vitis vinifera]
gi|297745544|emb|CBI40709.3| unnamed protein product [Vitis vinifera]
Length = 695
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ MI GK + A F ++ EG+ PD + +I + + G +KA E
Sbjct: 429 PDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEEL 488
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+E M+ SGC+P T+ I+I + GE+E
Sbjct: 489 FEAMQESGCSPCTTTYNIMINSF---GEQE 515
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L D + + +++ A+ V+ P + +I LG + AE +F EL
Sbjct: 259 LNDIIVGFAKSGDVNRAMSFLAMVQGN-GLSPKTATLVAVITALGNAGRTEEAEAIFEEL 317
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
K+ GL P TR Y ++ Y++ G + A M+ SG +P + T+++LI NAG
Sbjct: 318 KEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRW 377
Query: 215 E 215
E
Sbjct: 378 E 378
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A+ F +R + KP + + + +I G++++ A A + +K+ L PD YT ++
Sbjct: 590 AINAFRVMRAD-GLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLM 648
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHK 198
++V DK YE M SGCTP +
Sbjct: 649 KALIRVEKFDKVPAVYEEMTLSGCTPDR 676
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 62/146 (42%), Gaps = 1/146 (0%)
Query: 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
A L+ +T L + A +F + KE P Y+ ++ K + AE +
Sbjct: 292 ATLVAVITALGNAGRTEEAEAIFEEL-KEGGLMPRTRAYNALLKGYVKTGSLKDAESIVS 350
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
E+++ G PD Y+ +I Y G + A + M+ASG P+ F+ ++ + + G
Sbjct: 351 EMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRG 410
Query: 213 EEELVAAVRRDCIQYVEFPERFLEEV 238
+ + V R+ P+R V
Sbjct: 411 KWQKSFQVLREMRNSGVSPDRHFYNV 436
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ ++ + G++ + A E +K GL P + +Y +I Y Q G+ ++A+ + M+
Sbjct: 539 YTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNALINAYAQRGLSEQAINAFRVMR 598
Query: 191 ASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVE 229
A G P L LI NA E+ A +QY++
Sbjct: 599 ADGLKPSVLVLNSLI----NAFGEDRRDAEAFSVLQYMK 633
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQI--AMAEELFCELKKEGLDP 161
R ++L+ AL + + +R++ + D YS +I L + + +M ++++ E++ + ++
Sbjct: 196 RNDDLEKALNLMSRMRRD-GFPSDFVNYSFIIQSLTRTNKSDSSMLQKIYAEIESDKIEL 254
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
D ++ ++I + + G +++AM ++ +G +P T +I L NAG E A+
Sbjct: 255 DGQLLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAI 313
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + Y+ MI G+ ++ + L +++ +GL + YT ++ +Y Q G A+E
Sbjct: 499 PCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIEC 558
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG-EEELVAAVR 221
E MK+ G P + LI G E+ + A R
Sbjct: 559 LEVMKSVGLKPSSTMYNALINAYAQRGLSEQAINAFR 595
>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1113
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
Query: 85 SRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQI 144
R+C+ + L+ + L + + +A VF KE+ KP L Y+ +I
Sbjct: 748 GRVCKD-GSVLMPIIKVLCKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLGVHND 806
Query: 145 AMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTIL 204
MA LF E+K G PD Y ++ + + G I++ E YE M S C P+ +T I+
Sbjct: 807 EMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNII 866
Query: 205 IRNL 208
I NL
Sbjct: 867 IANL 870
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 47/84 (55%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P+ ++Y+ +I GK + A ELF + +EG+ PD + YT ++G + G +D A+
Sbjct: 927 RPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALH 986
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
+E +K +G + + ++I L
Sbjct: 987 YFEKLKQTGLYLDSIAYNLMIDGL 1010
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R + ++ AL +++ ++ PDL Y+ +IL LG + A +L+ EL+ GL+P
Sbjct: 1010 LGRSHRIEEALTLYDEMQSR-GINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEP 1068
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF 201
+ Y +I Y G D A Y+ M GC+P+ TF
Sbjct: 1069 NVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPNTGTF 1108
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP L +S +++ GK + + L E++ GL P+ YT I V + G ID+A
Sbjct: 226 KPSLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACR 285
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
+ M+ GC P +T+T+LI L AG+
Sbjct: 286 IMKRMEDDGCGPDVVTYTVLIDALCTAGK 314
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 1/115 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
+D AL F +++ Y ++ Y+ MI LG++ +I A L+ E++ G++PD Y
Sbjct: 981 VDDALHYFEKLKQTGLYLDSIA-YNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYN 1039
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
+I GM+++A + YE ++ G P+ T+ LIR +G + AV +
Sbjct: 1040 SLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYK 1094
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ + + +I L K ++ A ++FC LK L P Y +I + G + +AME
Sbjct: 541 EPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAME 600
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
+ +M +GC P+ +TF ++ L E +L
Sbjct: 601 LFASMTGNGCPPNTITFNTILDCLCKNDEVDL 632
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ Y+ I +LG+ +I A + ++ +G PD YT +I G +D AME
Sbjct: 261 KPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAME 320
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
+ MKAS P ++T+ ++ + G+
Sbjct: 321 LFVKMKASSHKPDRVTYITMLDKFSDCGD 349
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I L ++ A ELF ++K PD Y M+ + G + + E
Sbjct: 297 PDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEF 356
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+ M+A G P +TFTIL+ L AG
Sbjct: 357 WSEMEADGYAPDVITFTILVNALCKAGN 384
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L + +D A K+F + K++ P + Y+ +I LGK Q+ A ELF + G
Sbjct: 551 INTLYKAGRVDEAWKMFCRL-KDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNG 609
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
P+T + ++ + +D A++ M C P LTF +I L
Sbjct: 610 CPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGL 659
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L + +D A + + +RK+ P+L Y+ +I L + ++ A +LF ++ G
Sbjct: 376 VNALCKAGNIDEAFHLLDVMRKQ-GVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLG 434
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH 197
+ P Y I Y + G DKA+ET+E MK G P+
Sbjct: 435 VVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPN 473
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 120 KEVW-------YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGV 172
KE W Y PD+ ++ ++ L K I A L ++K+G+ P+ Y +I
Sbjct: 354 KEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISG 413
Query: 173 YLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
L+V +D A++ + M+ G P T+ + I +G +
Sbjct: 414 LLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSD 456
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 129 SLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYET 188
SLYS L + ++ A+ +F LK GL PD+ Y M+ Y + G +D+A+E
Sbjct: 480 SLYS-----LAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSD 534
Query: 189 MKASGCTPHKLTFTILIRNLENAG 212
M + C P + LI L AG
Sbjct: 535 MSENQCEPDIIVINSLINTLYKAG 558
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
+LD A+++F K +KPD Y M+ + +E + E++ +G PD +
Sbjct: 314 KLDDAMELF-VKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITF 372
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
T ++ + G ID+A + M+ G P+ T+ LI L
Sbjct: 373 TILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGL 414
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP+ ++ +I L K+ + A +LF +L P Y ++ L+ G +++A E
Sbjct: 857 KPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKE 916
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
+E M GC P+ + ILI G+
Sbjct: 917 LFEEMVDYGCRPNNAIYNILINGFGKTGD 945
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Query: 96 LDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELK 155
L +L E+ R E A +FN ++ PD Y+ M+ K Q+ A EL ++
Sbjct: 481 LYSLAEMGRLRE---AKVIFNRLKSN-GLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMS 536
Query: 156 KEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ +PD V +I + G +D+A + + +K P +T+ LI L G+
Sbjct: 537 ENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQ 594
>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Cucumis sativus]
Length = 653
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + LD +++F+F R + + Y+ +I LGK +I AE LF E+ ++G
Sbjct: 405 LCKSGRLDDGMELFDFCRNK-GVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCAR 463
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL--ENAGEEEL 216
D+ Y +I + G ID+A+ + M+ GC TFTILI L E+ EE +
Sbjct: 464 DSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAI 520
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+ ++++Y+ +I KN + A LF +K EG +PD Y+ ++ + G +D ME
Sbjct: 357 RANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGME 416
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ + G + + + LI L AG E
Sbjct: 417 LFDFCRNKGVAINAMFYASLIDGLGKAGRIE 447
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE P L Y+ ++ L + I AE++F + + PDT Y MI Y + G +
Sbjct: 212 KENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKL 271
Query: 180 DKAMETYETMKASGCTPHKLTFTILIR 206
KAME + M+ P K+T+ LI+
Sbjct: 272 QKAMEKFRDMEMKNVKPDKITYMTLIQ 298
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 34/171 (19%), Positives = 72/171 (42%), Gaps = 6/171 (3%)
Query: 81 EGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK 140
E + CR A + + ++ A+++F ++ E ++PD YS ++ L K
Sbjct: 349 ETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNE-GFEPDAVTYSVLVNGLCK 407
Query: 141 NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT 200
+ ++ ELF + +G+ + Y +I + G I+ A +E M GC
Sbjct: 408 SGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYC 467
Query: 201 FTILIRNLENAGEEELVAAV-----RRDCIQYVEFPERFLEEVYQKHRKTQ 246
+ +I L G+ + A+ C Q V ++ ++++H+ +
Sbjct: 468 YNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEE 518
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 10/149 (6%)
Query: 70 MKLAKSSSKLEEGFQSRICRLLKADLLDTLT-------ELRRQNELDLALKVFNFVRKEV 122
+ L SS +E S CR L ELR + E+ A++ F + K+
Sbjct: 88 LNLLDGSSNMEHNLDS-FCRKFFVKLSPNFVTFVLQSVELREKPEV--AVRFFFWAGKQK 144
Query: 123 WYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKA 182
Y + + +I +L + + +F ELK GL +I + +G++++
Sbjct: 145 KYVHKIECHVSLIELLTFSADLVKIRLVFFELKDRGLLMTESAANSLIKSFGNLGLVEEL 204
Query: 183 METYETMKASGCTPHKLTFTILIRNLENA 211
+ + MK +G P T+ L+ L N+
Sbjct: 205 LWVWRRMKENGIDPSLYTYNFLVNGLVNS 233
>gi|110288709|gb|ABG65945.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|110288711|gb|ABG65946.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 614
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 5/131 (3%)
Query: 86 RICRLLKADLLDTLTEL----RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141
R C+L+ + T L + D AL+V + KE KPD LY+ +I K
Sbjct: 97 RFCKLINNPKMSTFNMLLSVCANSQDFDGALQVM-VLLKEAGLKPDCKLYTTLISTCAKC 155
Query: 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF 201
++ E+F E+ G++P+ Y+ +I + G + KA Y M + P ++ F
Sbjct: 156 GKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVF 215
Query: 202 TILIRNLENAG 212
LI +G
Sbjct: 216 NALISACGESG 226
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 46/89 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
P +S ++ ++ + ++ A ++ LK+ GL PD ++YT +I + G +D E
Sbjct: 104 NPKMSTFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFE 163
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
+ M ++G P+ T++ LI AG+
Sbjct: 164 VFHEMVSAGIEPNVNTYSALIDGCAKAGQ 192
>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Vitis vinifera]
Length = 898
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+ +D AL + + ++ D+ LY+ I GK ++ M+ + F E+K GL PD
Sbjct: 242 REGRVDAALSLLDEMKSNSL-DADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDD 300
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
YT MIGV + +D+A+E +E ++ + P + +I +AG+
Sbjct: 301 VTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGK 350
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 4/111 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+ L+E+R E D L +F+ + +E+ Y+ ++ L++ +I + + ++ A L E+
Sbjct: 201 LIGALSEVR---EPDPMLILFHQM-QELGYEVNVHLFTTLIRVFAREGRVDAALSLLDEM 256
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
K LD D +Y I + + G +D + + + MK+ G P +T+T +I
Sbjct: 257 KSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMI 307
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
LT L ++ ++ AL++F ++++ P++ Y+ +I ML + ++ A E+ ++++ G
Sbjct: 377 LTCLGKKRRVEEALRIFEEMKRDAV--PNVPTYNILIDMLCREGKLNAALEIRDDMERAG 434
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
L P+ MI + +++A +E M CTP+ +TF+ LI L G
Sbjct: 435 LFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCG 488
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 62/116 (53%), Gaps = 4/116 (3%)
Query: 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
++D L ++ R LD A +F + K ++ +YS +I GK +I A +
Sbjct: 653 GSVIDGLAKIDR---LDEAYMLFEEAKSN-GIKLNVVVYSSLIDGFGKVGRIDEAYLIME 708
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
EL ++GL P+ + ++ ++ I++A+ +++MK C P+++T++ILI L
Sbjct: 709 ELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGL 764
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LLD L + NE AL F + K++ P+ YS +I L + ++ A + E+
Sbjct: 725 LLDALVKAEEINE---ALICFQSM-KDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEM 780
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
+K GL P+T YT MI + G I +A + KA+G P ++ +I L +A
Sbjct: 781 QKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSA 837
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 14/122 (11%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVR--KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
L++ L +R+ N K F F + +++ KP+ Y+ MI L K I A LF
Sbjct: 760 LINGLCRVRKFN------KAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFS 813
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY---ETMKASGCTPHKLTFTILIRNLE 209
K G PD+ Y MI + +KAM+ Y E + GC H T +L+ L
Sbjct: 814 RFKANGGIPDSASYNAMIE---GLSSANKAMDAYALFEETRLKGCNIHTKTCVVLLDALH 870
Query: 210 NA 211
A
Sbjct: 871 KA 872
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PD YS +I L K ELF +K++G DT Y +I + + G ++KA
Sbjct: 575 FIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAY 634
Query: 184 ETYETMKASGCTPHKLTFTILIRNL 208
+ E MK G P +T+ +I L
Sbjct: 635 QLLEEMKVKGHPPTVVTYGSVIDGL 659
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + Y+ ++ LGK +++ A +F E+K++ + P+ Y +I + + G ++ A+E
Sbjct: 368 PSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAV-PNVPTYNILIDMLCREGKLNAALEI 426
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ M+ +G P+ LT I+I L
Sbjct: 427 RDDMERAGLFPNVLTVNIMIDRL 449
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ P + Y +I L K ++ A LF E K G+ + VY+ +I + +VG ID+A
Sbjct: 645 HPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAY 704
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGE 213
E + G TP+ T+ L+ L A E
Sbjct: 705 LIMEELMQKGLTPNVYTWNCLLDALVKAEE 734
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 126 PDLSL---YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKA 182
PDL+L Y D + G+ ++ LF E+ G PD R Y+ +I ++ G+ ++
Sbjct: 542 PDLTLINTYMDCVFKAGETEK---GRALFREINAHGFIPDARSYSILIHGLVKAGLANET 598
Query: 183 METYETMKASGCTPHKLTFTILIRNLENAGE 213
E + MK GC + +I +G+
Sbjct: 599 YELFYAMKEQGCVLDTHAYNAVIDGFCKSGK 629
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 1/134 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L + +L+ A +F + +V P+ +S +I LGK ++ A L+ ++ G
Sbjct: 446 IDRLCKAQKLEEACSIFEGMDDKVC-TPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCG 504
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
P VYT +I + + G + + Y+ M +GC+P + + AGE E
Sbjct: 505 HVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGR 564
Query: 219 AVRRDCIQYVEFPE 232
A+ R+ + P+
Sbjct: 565 ALFREINAHGFIPD 578
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R+ +L+ AL++ + + + + P++ + MI L K +++ A +F + + P
Sbjct: 414 LCREGKLNAALEIRDDMERAGLF-PNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTP 472
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ ++ +I + G +D A YE M G P + +T LIR+ G +E
Sbjct: 473 NAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKE 526
>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
Length = 442
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L Q +D A+ + + + K KPD+ Y+ ++ L + AEEL + + G
Sbjct: 189 INGLCEQRNVDGAMGLLSKM-KSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNG 247
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
PD + +IG Q G++ A+E ++ M GCTP+ +T++ +I L A
Sbjct: 248 CLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKA 300
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 7/130 (5%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ L + +LD AL++FN + + + PD +Y + L + I A + +L+ G
Sbjct: 294 ISGLAKATKLDQALELFNEMGHK-GFNPD-KIYQLLAECLNDDDTIEEAIQTVRKLQDSG 351
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE-----NAGE 213
+ P T +Y ++ + G + A++ M +SGC P LT+ ILI L N
Sbjct: 352 ISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEAR 411
Query: 214 EELVAAVRRD 223
E L+ RD
Sbjct: 412 ELLIKLCSRD 421
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+ YS +I L K ++ A ELF E+ +G +PD ++Y + I++A++T
Sbjct: 285 PNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPD-KIYQLLAECLNDDDTIEEAIQT 343
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEEL 216
++ SG +PH + + ++ L G+ E
Sbjct: 344 VRKLQDSGISPHTVLYNAILLGLCRNGKTEF 374
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P+ Y+ +I L + Q+ A + ++ G PD Y ++ + +AME
Sbjct: 4 QPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAME 63
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
+ M+A GCTP+ +T+ +L+ + G+
Sbjct: 64 LIDLMRAEGCTPNNVTYNVLMDGMCGEGD 92
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ ++ K + A EL ++ EG P+ Y ++ G +D A+E
Sbjct: 40 PDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALEL 99
Query: 186 YETMKASGCTPHKLTFTILIRNLENA-----GEEELVAAVRRDC 224
+ + GC P + + +++ L +A +E + +R +C
Sbjct: 100 LRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENC 143
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP Y+ ++ L ++ A+EL E+ +E P+ + +I + G++ +A++
Sbjct: 109 KPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQ 168
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
E M GCT + +T+ +I L
Sbjct: 169 LLEKMSKHGCTANIVTYNAIINGL 192
>gi|302801478|ref|XP_002982495.1| hypothetical protein SELMODRAFT_116601 [Selaginella moellendorffii]
gi|300149594|gb|EFJ16248.1| hypothetical protein SELMODRAFT_116601 [Selaginella moellendorffii]
Length = 448
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 81/160 (50%), Gaps = 5/160 (3%)
Query: 90 LLKADLLDTLTE-LRRQNELDLALKVF-NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMA 147
LL A + + L E L R ++++ AL+V V K P L Y+ +I+ K ++ A
Sbjct: 287 LLDAGIYNVLIEGLCRASKVEEALEVTAGMVDKGCI--PTLQTYNALIMGFFKANEVDKA 344
Query: 148 EELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN 207
+LF ++++G P+T +Y+ I +VG I++A E ++ GC P +T+ LIR
Sbjct: 345 LQLFRVMEEKGFSPNTMIYSTFIDGLCKVGKINEAHEFFQQSVERGCVPDNVTYNALIRG 404
Query: 208 LENAGEEELVAAVRRDCIQYVEFPERFLEEV-YQKHRKTQ 246
L A + + R+ + +R L + +Q+ R+ Q
Sbjct: 405 LFGANRMDEAHRLYREMGERGYIADRSLRTLAFQRSREEQ 444
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Query: 114 VFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY 173
V ++K V PD Y+ +I +L K+ + A ++F + ++ + P+ VYT ++ +
Sbjct: 138 VGEMIKKSV---PDGMTYTALISVLCKHNRADDAMKVFDIMVEKEIVPNLDVYTSLLAAH 194
Query: 174 LQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
+ +D A + M G P T+ +L+R L N G L
Sbjct: 195 CRTRKLDGAYRLFVEMIQRGYGPSASTYGLLLRCLCNGGRSYL 237
>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
ephedroides]
Length = 418
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 48/89 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ YS +I L K ++ A ELF E+ GL P+ +T +I + + G ID AME
Sbjct: 203 QPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAME 262
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
Y+ M G +P +T+ LI L G+
Sbjct: 263 AYKEMLRQGFSPDLITYNTLIYGLCKEGD 291
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ +DLA++ + + ++ + PDL Y+ +I L K + A++L E+ +GL PD
Sbjct: 253 KTGSIDLAMEAYKEMLRQ-GFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDK 311
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
YT +I + G ++ A + + M + +T LI L G+
Sbjct: 312 ITYTTLIDGSCKEGDLETAFKYKKRMIKENIRLDDVAYTALISGLCREGQ 361
>gi|115443739|ref|NP_001045649.1| Os02g0110400 [Oryza sativa Japonica Group]
gi|41052925|dbj|BAD07836.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535180|dbj|BAF07563.1| Os02g0110400 [Oryza sativa Japonica Group]
gi|215706484|dbj|BAG93340.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222622028|gb|EEE56160.1| hypothetical protein OsJ_05062 [Oryza sativa Japonica Group]
Length = 747
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
+A +++N + + PDLS Y+ +I G K++ A +F ++K G+ PD Y +
Sbjct: 225 MARRIYNAMIADA-VTPDLSTYNTLIWGFGLCKKMEAALRVFGDMKDHGVTPDVTTYNTL 283
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ +++ G ++ A + ++ M +G + +++ ++I+ AG+ E
Sbjct: 284 LNAWVRAGDLESARKVFDEMPGAGFAQNSVSYNVMIKGYVEAGKVE 329
>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
[Vitis vinifera]
Length = 691
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 58/106 (54%), Gaps = 9/106 (8%)
Query: 121 EVWYK-------PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY 173
E+W++ DL YS +I L + + A ++ E+ + G+ PD VY M+ Y
Sbjct: 276 EIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGY 335
Query: 174 LQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL-ENAGEEELVA 218
L+ G I++ +E ++ M+ GC +++ ILIR L ENA +E ++
Sbjct: 336 LRAGRIEECLELWKVMEKEGCRT-VVSYNILIRGLFENAKVDEAIS 380
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 55/109 (50%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+KP++ YS ++ L + K++ MA L+C+ ++G PD +++ +I G ++ A+
Sbjct: 530 WKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDAL 589
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
+ Y MK C P+ +T L+ + E + + +QY P+
Sbjct: 590 QLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGPQPD 638
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 58/111 (52%), Gaps = 2/111 (1%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+ + D A ++ N++ ++ + PD+ Y +I L KN ++ A +LF E+ + G+ PD
Sbjct: 161 RKKQFDKAKELLNWMWEQG-FSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDV 219
Query: 164 RVYTEMIGVYLQVGMIDKAMETYE-TMKASGCTPHKLTFTILIRNLENAGE 213
Y +I + + G I A E +E +K P+ ++ ++I L G+
Sbjct: 220 ACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGK 270
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L N+ D A F + + + P+L Y+ +I + + KQ A+EL + ++G
Sbjct: 121 LNALIESNKWDEAESFFLYF-ETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQG 179
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
PD Y +I + G + A++ ++ M G TP + ILI G+
Sbjct: 180 FSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGD 234
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 63/142 (44%)
Query: 71 KLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSL 130
KL S++ E +++ C+ + L + + + D AL +F + + +P +
Sbjct: 57 KLVAHVSRIVELIRTQKCKCPEDVALTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRS 116
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ ++ L ++ + AE F + GL P+ + Y +I + + DKA E M
Sbjct: 117 YNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMW 176
Query: 191 ASGCTPHKLTFTILIRNLENAG 212
G +P ++ LI +L G
Sbjct: 177 EQGFSPDVFSYGTLINSLAKNG 198
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D YS MI L + ++ + ++ K G P+ V +I +++ ++ A+ +
Sbjct: 428 DTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFF 487
Query: 187 ETMKASGCTPHKLTFTILIRNLENA 211
M + GC P +T+ LI L A
Sbjct: 488 GNMVSKGCFPTVVTYNTLINGLSKA 512
>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
Japonica Group]
gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
Length = 648
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R E++ ALK++ +R KPDL +S +I + + ++ A E++ GL PD
Sbjct: 273 RVGEIEEALKIYKEMRHR-GIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDG 331
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+YT +IG + + G++ A+ + M GC P +T+ L+ L
Sbjct: 332 VIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGL 376
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 54/99 (54%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP + Y+ ++ L ++ A E+F E+ G+ PD R +T +IG + +VG I++A++
Sbjct: 223 KPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALK 282
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
Y+ M+ G P ++F+ LI G+ + A R+
Sbjct: 283 IYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLRE 321
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ ++ L K +++ AE L E+++ G+ PD +T +I Y G +DKA++
Sbjct: 364 PDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQL 423
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
++TM P +T+ LI + G+
Sbjct: 424 FDTMLNQRLRPDIVTYNTLIDGMCRQGD 451
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Query: 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
L L R D A +VF + + PD+ ++ +I + +I A +++ E++
Sbjct: 232 VLKGLCRSGMWDKAWEVFKEM-DDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHR 290
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
G+ PD ++ +IG++ + G +D AM M+ G P + +T++I AG
Sbjct: 291 GIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAG 345
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ ++ M+ + A L + +GL P Y ++ + GM DKA E
Sbjct: 189 PDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEV 248
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ M G P +FTILI GE E
Sbjct: 249 FKEMDDFGVAPDVRSFTILIGGFCRVGEIE 278
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL Y+ +I K ++ A +L ++KE + PD Y +I + G + +A
Sbjct: 539 PDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWI 598
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+E M A G P + T+ +I AG +
Sbjct: 599 FEKMCAKGIEPDRYTYMSMINGHVTAGNSK 628
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E PDL ++ +I ++ A +LF + + L PD Y +I + G +
Sbjct: 393 RERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDL 452
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
DKA + ++ M + P+ +T++ILI + G+ E
Sbjct: 453 DKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVE 488
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+++++ A K+ N + KE +PD+ Y+ +I + + A +F ++ +G++PD
Sbjct: 553 KEDKMHDAFKLLNMMEKEK-VQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDR 611
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTP 196
Y MI ++ G +A + ++ M G P
Sbjct: 612 YTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAP 644
>gi|218189906|gb|EEC72333.1| hypothetical protein OsI_05540 [Oryza sativa Indica Group]
Length = 747
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
+A +++N + + PDLS Y+ +I G K++ A +F ++K G+ PD Y +
Sbjct: 225 MARRIYNAMIADA-VTPDLSTYNTLIWGFGLCKKMEAALRVFGDMKDHGVTPDVTTYNTL 283
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ +++ G ++ A + ++ M +G + +++ ++I+ AG+ E
Sbjct: 284 LNAWVRAGDLESARKVFDEMPGAGFAQNSVSYNVMIKGYVEAGKVE 329
>gi|449437886|ref|XP_004136721.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g06400, mitochondrial-like [Cucumis sativus]
gi|449501176|ref|XP_004161299.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g06400, mitochondrial-like [Cucumis sativus]
Length = 1037
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 58/107 (54%)
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
LAL FN+V+ ++ ++++ ++ + G+ + + ++L E++ L D + +T +
Sbjct: 175 LALGFFNWVKSRDGFQCTTNVFNTVLSIAGEARDFKLIDKLLEEMESYSLLKDIKTWTIL 234
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
I +Y + K++ Y MK SGC P + + LI +L AG+ EL
Sbjct: 235 ISLYGNAKLTGKSLMVYSKMKESGCEPDGVVYKTLICSLSAAGKPEL 281
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K+V P + +Y+ I+ K KQ A E+ ++ +EG +P Y+ ++ Y+ +G +
Sbjct: 887 KQVGINPTVHVYTSFIVYSFKEKQTRRALEILAKMLQEGCEPSIATYSAIVHGYMNMGKV 946
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+A + + MK G +P +T+LI L AG E
Sbjct: 947 CEAWKVFNYMKKYGPSPDFKAYTMLISCLCKAGRSE 982
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P ++ YS ++ ++ A ++F +KK G PD + YT +I + G ++A+E
Sbjct: 927 EPSIATYSAIVHGYMNMGKVCEAWKVFNYMKKYGPSPDFKAYTMLISCLCKAGRSEEALE 986
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
M +G P + F +I L G+ L RD +Q
Sbjct: 987 IISDMLNNGIAPSSINFRTVIFGLNREGKHVLA----RDVLQ 1024
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D + +I L + +I A EL +K++G D D ++Y +I YL+ + KA++ +
Sbjct: 368 DSEYFEILIGGLCRANRIEDALELINIIKRKG-DVDGKIYGIIINWYLRKNEVSKALDLF 426
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ MK G P T+T L+++L + E E
Sbjct: 427 QNMKEMGYFPTTSTYTQLMQHLFSLAEYE 455
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 48/112 (42%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R +LD AL + V + K D +Y ++ L + + A +K+ G++P
Sbjct: 834 LCRARKLDEALTLLEEVVGDERSKLDSYIYGSLVYGLLQTGRTEEALAKMNSMKQVGINP 893
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
VYT I + +A+E M GC P T++ ++ N G+
Sbjct: 894 TVHVYTSFIVYSFKEKQTRRALEILAKMLQEGCEPSIATYSAIVHGYMNMGK 945
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ ++ +I + G K + ++ ++K+ G +PD VY +I G + AME Y
Sbjct: 227 DIKTWTILISLYGNAKLTGKSLMVYSKMKESGCEPDGVVYKTLICSLSAAGKPELAMEFY 286
Query: 187 ETMKASGCTPHKLTFT-ILIRNLENAGEEELVAAVRRDCIQYVEFPER 233
+ M G + + +L+ +L +G+ V + +D + ER
Sbjct: 287 QEMAKKGISVVDMKMCKMLLSSLAGSGDTASVLDIAKDMVALFNVQER 334
>gi|449456671|ref|XP_004146072.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14580,
mitochondrial-like [Cucumis sativus]
gi|449503658|ref|XP_004162112.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14580,
mitochondrial-like [Cucumis sativus]
Length = 411
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 69/126 (54%), Gaps = 7/126 (5%)
Query: 102 LRRQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD 160
L + LD ALKV + F ++ +P++ +S ++ L +N ++ A ELFC+++ EG+
Sbjct: 208 LCQSGNLDAALKVLDEFPQQRC--RPNVRTFSTLLHGLCENGELGRALELFCKMENEGVC 265
Query: 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
PDT + +I + I++A+E MK GC P+ T+ ++ L + G + + A
Sbjct: 266 PDTITFNILISGLRKKKRIEEAIELLGRMKLKGCYPNAGTYQEVLYGLLDTG--KFIEA- 322
Query: 221 RRDCIQ 226
RDC+
Sbjct: 323 -RDCMH 327
>gi|226530981|ref|NP_001141613.1| uncharacterized protein LOC100273731 [Zea mays]
gi|194705268|gb|ACF86718.1| unknown [Zea mays]
gi|414870824|tpg|DAA49381.1| TPA: hypothetical protein ZEAMMB73_722490 [Zea mays]
Length = 504
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL + N++ +V +P++ ++++I LG+ + F E+ K+G DPD YT MI
Sbjct: 338 ALNLLNYM-SDVGCRPNVLHFTNLIDGLGRAGNLEACRYFFDEMMKKGCDPDVVCYTVMI 396
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
Y+ G ++A ++ M G P+ T+ +I+ L GE
Sbjct: 397 ASYVAAGEFEEAQRFFDDMLMRGQLPNVYTYNSMIQGLCAVGE 439
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL Y+ ++ +LGK + A L + G P+ +T +I + G ++
Sbjct: 317 PDLHTYNLLLHVLGKGDKPLAALNLLNYMSDVGCRPNVLHFTNLIDGLGRAGNLEACRYF 376
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ M GC P + +T++I + AGE E
Sbjct: 377 FDEMMKKGCDPDVVCYTVMIASYVAAGEFE 406
Score = 36.6 bits (83), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 117 FVRKEVW-YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175
F+R + Y+P + ++ ++ L +Q ++ E + ++ EG PD Y ++
Sbjct: 237 FIRSSTFNYRPFRNAFNAILYTLLTIEQYSLIEWVHEKMILEGYSPDVLTYNVVLRAKYM 296
Query: 176 VGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
+G +D+ + + M +G TP T+ +L+ L G++ L A
Sbjct: 297 LGKLDQFHQLLDEMGKNGLTPDLHTYNLLLHVL-GKGDKPLAA 338
>gi|42562903|ref|NP_176512.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|114050643|gb|ABI49471.1| At1g63230 [Arabidopsis thaliana]
gi|332195952|gb|AEE34073.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 323
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
PD+ +S +I K K++ E+FCE+ + G+ +T YT +I + QVG +D A +
Sbjct: 213 SPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQD 272
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
M +SG P+ +TF ++ +L
Sbjct: 273 LLNVMISSGVAPNYITFQSMLASL 296
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
PD+ +S +I L K +++ AEE++ ++ + G+ P T Y MI + + ++ A
Sbjct: 143 NPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKR 202
Query: 185 TYETMKASGCTPHKLTFTILIRN 207
++M + C+P +TF+ LI
Sbjct: 203 MLDSMASKSCSPDVVTFSTLING 225
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E K + +Y+ +I L K+ A+ LF E+ +G+ PD Y+ MI + + G
Sbjct: 68 EETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRW 127
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFP 231
A + M P +TF+ LI L G+ + D ++ FP
Sbjct: 128 TDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFP 179
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 41/80 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ YS MI ++ + AE+L ++ + ++PD ++ +I ++ G + +A E
Sbjct: 109 PDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEI 168
Query: 186 YETMKASGCTPHKLTFTILI 205
Y M G P +T+ +I
Sbjct: 169 YGDMLRRGIFPTTITYNSMI 188
>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 64/116 (55%), Gaps = 4/116 (3%)
Query: 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
+ LLD L + LD ALK+ + +E +PD+ LY+ +I + ++ +A+ELF
Sbjct: 446 STLLDGLC---KHGHLDEALKLLKSM-QESKIEPDIVLYNILIEGMFIAGKLEVAKELFS 501
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+L +G+ P R YT MI L+ G+ D+A E + M+ G P+ ++ ++I+
Sbjct: 502 KLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGF 557
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP+L Y+ +I L K+ + A +L E+ G+ PD Y+ ++ + +G +++A
Sbjct: 229 KPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATI 288
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ M P+ +TFTIL+ L G
Sbjct: 289 LFNEMVGRNVMPNTVTFTILVDGLCKEG 316
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 58/110 (52%), Gaps = 3/110 (2%)
Query: 105 QNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ E+ A+ +FN VR+ ++PD+ YS +I L K+ +MA +L +++++G P+
Sbjct: 175 EGEIKEAVGLFNEMVRR--GHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNL 232
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
YT +I + +++ AM+ M G P +T++ ++ + G
Sbjct: 233 VAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGH 282
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
N++D A KV + + + P + Y+ +I K +++ A+ L E+ ++ L PDT
Sbjct: 350 NNQMDEAQKVLD-IMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTV 408
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
Y+ ++ QVG +A+ ++ M +SG P +T++ L+ L G
Sbjct: 409 TYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGH 457
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL YS ++ L K+ + A +L +++ ++PD +Y +I G ++ A E
Sbjct: 440 PDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKEL 499
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ + A G P T+TI+I+ L G
Sbjct: 500 FSKLFADGIQPTIRTYTIMIKGLLKEG 526
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD YS ++ L + + A LF E+ GL PD Y+ ++ + G +D+A++
Sbjct: 405 PDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKL 464
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRRDCIQ 226
++M+ S P + + ILI + AG+ +EL + + D IQ
Sbjct: 465 LKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQ 509
>gi|356569072|ref|XP_003552730.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14190,
chloroplastic-like [Glycine max]
Length = 509
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP L Y+ +I L + + + A E+K+ GL+ D+ Y ++G Y + M D+ E
Sbjct: 169 KPSLDTYNPIIHGLSREGKFSDALRFIDEMKESGLELDSETYDGLLGAYGKFQMYDEMGE 228
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ M+ GC+P +T+ ILI+ AG
Sbjct: 229 CVKKMELEGCSPDHITYNILIQEYARAG 256
>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
Length = 628
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE + P+L Y+ M+ L K KQ+ A+EL E+ GL PD Y+ ++ ++G +
Sbjct: 331 KEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKL 390
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
D+A + E M G P T ++ L AG+
Sbjct: 391 DRACDLLEEMSKEGVFPDSFTDASILNALSKAGK 424
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ YS ++ L K ++ A +L E+ KEG+ PD+ ++ + G +D A+
Sbjct: 372 PDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSH 431
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
ETMKA G TP +T+ L+ L AG
Sbjct: 432 LETMKARGSTPDLVTYNTLLDGLCKAG 458
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 2/111 (1%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L + N LA + F +++ Y PD YS ++ L K ++ A+EL +L++ G
Sbjct: 45 LDALAKANAGQLAYEKFQQMQRR-GYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESG 103
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA-SGCTPHKLTFTILIRNL 208
+ + Y+ +I + +D A+E ++TM A GC P +TF L++ L
Sbjct: 104 VKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGL 154
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 11/123 (8%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYK--PDLSLYSDMILMLGKNKQIAMAEELFC 152
LLD L + R +E F+ K V K PD+ Y+ +I L ++ Q A A +F
Sbjct: 450 LLDGLCKAGRIDE------AITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQ 503
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
E+ K G+ PDT +Y ++ + G+ D A+ E +K S C P + +++ L AG
Sbjct: 504 EMVKRGVLPDTVLYHSLLDGLARNGLEDLAL---ELLKTSLCKPDFVMHKMVVDGLCKAG 560
Query: 213 EEE 215
+ E
Sbjct: 561 KAE 563
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 4/141 (2%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L +L +LD A + + KE + PD + ++ L K ++ A +
Sbjct: 380 LVDGLCKL---GKLDRACDLLEEMSKEGVF-PDSFTDASILNALSKAGKVDYALSHLETM 435
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
K G PD Y ++ + G ID+A+ M A+ CTP ++TI+I L +G+
Sbjct: 436 KARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQA 495
Query: 215 ELVAAVRRDCIQYVEFPERFL 235
A+ ++ ++ P+ L
Sbjct: 496 AGAHAIFQEMVKRGVLPDTVL 516
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 52/108 (48%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ + +D AL++F + PD+ ++ ++ L ++++ A LF + K G +P+
Sbjct: 120 KASRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNV 179
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
Y+ ++ + G +D+A +E M C P + +T + L A
Sbjct: 180 ISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKA 227
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 55/104 (52%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
LR ++ +++F+++ ++ Y+ + Y+ + L K +A E F ++++ G P
Sbjct: 12 LRHLGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPP 71
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
D Y+ ++ + G +DKA E ++ SG + +T++++I
Sbjct: 72 DDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVI 115
>gi|255660942|gb|ACU25640.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 484
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ M+ + K++ AE+ F E+K ++P YT +I Y+ V +D A+
Sbjct: 183 PDVVTYNTMVNGYCRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L NA
Sbjct: 243 VEEMKGFGMKPNAITYSTLLPGLCNA 268
>gi|168030898|ref|XP_001767959.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680801|gb|EDQ67234.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 957
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L ++ + A+ F +R + PD LY+ +I LGK + +E L+ ++KK+G+ P
Sbjct: 222 LNKEGRTEDAVHTFKDMRA-AGHLPDELLYNTIICALGKLGRYQESEALYLDMKKQGIVP 280
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
YT MI V+ + G A ET M+ SGC ++ + +I AG
Sbjct: 281 SKFTYTIMINVWSKAGRFASAAETLAEMQRSGCIADEVVYCSIINMYGKAG 331
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 53/115 (46%)
Query: 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKK 156
D L+ Q A + F +++ ++ Y P + Y+ ++ + G+ ++ +AEE E+
Sbjct: 76 DMCIVLKEQRGWRQAREFFEWMKLQIPYSPSVIAYTTLLGIYGQAGKLTLAEETLSEMLD 135
Query: 157 EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
G++PD M+ Y + D +E YE M+ G P + +I L A
Sbjct: 136 AGVEPDEVAGGCMLEAYARWERYDTLLEFYEAMRQRGLVPSAHVYRTMIVTLYKA 190
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P+ LY+ +I +L K + A F +++ G PD +Y +I ++G ++
Sbjct: 209 EPNFVLYAIIIHILNKEGRTEDAVHTFKDMRAAGHLPDELLYNTIICALGKLGRYQESEA 268
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE-----EELVAAVRRDCI 225
Y MK G P K T+TI+I AG E L R CI
Sbjct: 269 LYLDMKKQGIVPSKFTYTIMINVWSKAGRFASAAETLAEMQRSGCI 314
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R +++ A KV+N + + ++ Y +MI + K + + AE L E+++ G+ PD
Sbjct: 399 RIGDVEQATKVYNDMVEAG--SANVVTYGNMINLYSKFQMVEDAENLLAEMRESGVKPDE 456
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASG 193
+Y + +Y MIDKA + MK G
Sbjct: 457 YIYGSFVKLYCNSDMIDKATMVVQEMKDDG 486
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
YS MI G + A +LF E++ +G P+ +Y ++ + + G+ +A M+
Sbjct: 722 YSQMIHCYGCAGRPKEAADLFQEMETKGFKPNEVIYNNLLDAFARAGLFAEARLLLSDMR 781
Query: 191 ASGCTPHKLTFTILIRNLENAGE 213
GC P +T+ +L+ + G+
Sbjct: 782 RKGCPPSSVTYLLLMSAYGSKGK 804
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P +Y MI+ L K ++ + A L+ +L E L+P+ +Y +I + + G + A+ T
Sbjct: 175 PSAHVYRTMIVTLYKAERHSDALMLWEDLLVEKLEPNFVLYAIIIHILNKEGRTEDAVHT 234
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERF 234
++ M+A+G P +L + +I L G + A+ D + P +F
Sbjct: 235 FKDMRAAGHLPDELLYNTIICALGKLGRYQESEALYLDMKKQGIVPSKF 283
>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
Length = 628
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE + P+L Y+ M+ L K KQ+ A+EL E+ GL PD Y+ ++ ++G +
Sbjct: 331 KEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKL 390
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
D+A + E M G P T ++ L AG+
Sbjct: 391 DRACDLLEEMSKEGVFPDSFTDASILNALSKAGK 424
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ YS ++ L K ++ A +L E+ KEG+ PD+ ++ + G +D A+
Sbjct: 372 PDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSH 431
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
ETMKA G TP +T+ L+ L AG
Sbjct: 432 LETMKARGSTPDLVTYNTLLDGLCKAG 458
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 58/111 (52%), Gaps = 2/111 (1%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L + N LA + F +++ Y PD YS ++ L K ++ A+EL +L++ G
Sbjct: 45 LDALAKANAGQLAYEKFQQMQRR-GYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESG 103
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA-SGCTPHKLTFTILIRNL 208
+ + Y+ +I + +D A+E ++TM + GC P +TF L++ L
Sbjct: 104 VKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGL 154
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 11/123 (8%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYK--PDLSLYSDMILMLGKNKQIAMAEELFC 152
LLD L + R +E F+ K V K PD+ Y+ +I L ++ Q A A +F
Sbjct: 450 LLDGLCKAGRIDE------AITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQ 503
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
E+ K G+ PDT +Y ++ + G+ D A+ E +K S C P + +++ L AG
Sbjct: 504 EMVKRGVLPDTVLYHSLLDGLARNGLEDLAL---ELLKTSLCKPDFVMHKMVLDGLCKAG 560
Query: 213 EEE 215
+ E
Sbjct: 561 KAE 563
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 4/141 (2%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L +L +LD A + + KE + PD + ++ L K ++ A +
Sbjct: 380 LVDGLCKL---GKLDRACDLLEEMSKEGVF-PDSFTDASILNALSKAGKVDYALSHLETM 435
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
K G PD Y ++ + G ID+A+ M A+ CTP ++TI+I L +G+
Sbjct: 436 KARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQA 495
Query: 215 ELVAAVRRDCIQYVEFPERFL 235
A+ ++ ++ P+ L
Sbjct: 496 AGAHAIFQEMVKRGVLPDTVL 516
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 52/108 (48%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ + +D AL++F + PD+ ++ ++ L ++++ A LF + K G +P+
Sbjct: 120 KASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNV 179
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
Y+ ++ + G +D+A +E M C P + +T + L A
Sbjct: 180 ISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKA 227
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 55/104 (52%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
LR ++ +++F+++ ++ Y+ + Y+ + L K +A E F ++++ G P
Sbjct: 12 LRHLGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPP 71
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
D Y+ ++ + G +DKA E ++ SG + +T++++I
Sbjct: 72 DDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVI 115
>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
Length = 577
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
+ ++D A +VFN +R + KP++ YS +I K K +A A +LF E+ ++GL PDT
Sbjct: 321 RGQVDRARRVFNVLRDK-GIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTV 379
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTP 196
Y+ ++ ++VG I A + ++ M G TP
Sbjct: 380 TYSTILHGLIEVGRIGDAKKIFDEMLRVGPTP 411
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
++S Y+ +I L KN ++ A +F +L GL PD R Y MI + + G+ D+
Sbjct: 447 NISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGIL 506
Query: 187 ETMKASGCTPHKLTFTILIRNL 208
M+ +GC + +T+ ++++
Sbjct: 507 RKMEDNGCPANNITYNVIMQGF 528
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 45/82 (54%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
P++ +S +I L K ++ A+E+ + ++G++PD Y+ ++ Y G +D+A
Sbjct: 270 NPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARR 329
Query: 185 TYETMKASGCTPHKLTFTILIR 206
+ ++ G P+ +++ILI
Sbjct: 330 VFNVLRDKGIKPNIFSYSILIN 351
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ YS +I L K+ + A L E+K++ + P+ Y +I ++G +K
Sbjct: 200 KPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKT 259
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
M P+ TF+ILI L G+ E V R I+
Sbjct: 260 LLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIE 301
>gi|218200855|gb|EEC83282.1| hypothetical protein OsI_28637 [Oryza sativa Indica Group]
Length = 662
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ Y +I K K I A+E EL GL P+ +Y +IG Y + G I A++
Sbjct: 341 QPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAID 400
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
ETMK++G P +T+ L+ + +AG
Sbjct: 401 AVETMKSNGIQPTNVTYGSLMYWMCHAG 428
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P Y ++ + + A+ +F + ++ +D YT MI Y ++G + +A+
Sbjct: 411 QPTNVTYGSLMYWMCHAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVA 470
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+E M++ G +P+KLT+T L+ +G E
Sbjct: 471 YFEEMRSRGISPNKLTYTTLMYAYSKSGNSE 501
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ MI L K ++ E+ EL + GL P Y ++ + G +++A M+
Sbjct: 14 YTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRME 73
Query: 191 ASGCTPHKLTFTILIRNL---ENAGEEELV 217
G TP +TF ILI L E GE +V
Sbjct: 74 QGGMTPSVVTFGILINGLARGERFGEVGIV 103
Score = 37.0 bits (84), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 46/98 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + + +I L + ++ + E+++ G+ P+ +Y E+IG + + G +A+
Sbjct: 79 PSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRL 138
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
++ M P +T+ ++ + L GE E + D
Sbjct: 139 FDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERILED 176
>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
Length = 987
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 104 RQNELDLALKV-FNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
+ +D AL+V N + K DL Y +I +L K ++ A+E E+ GL P+
Sbjct: 400 KAERIDDALRVKSNMISSNC--KLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPN 457
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
YT +I Y +VGM+ A+E ++ M+ GC P+ T+ LI L
Sbjct: 458 VVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGL 503
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++E+ ++ + D A +FN + +KP + Y+ I K +I AE L E++++G
Sbjct: 672 ISEMIKEGKHDHAKSLFNEMISS-GHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDG 730
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ PD Y I +G ID+A T + M + C P+ T+ +L+++
Sbjct: 731 VTPDVVTYNIFINGCGHMGYIDRAFSTLKRMVDASCEPNCWTYWLLLKHF 780
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ MI+ K +A+A FC L++ G+ DT ++ Y + + KA
Sbjct: 177 PDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWL 236
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
M GC ++ ++TILI+ L A
Sbjct: 237 LMMMPLMGCRRNEYSYTILIQGLCEA 262
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL+VF + E + P+ Y +I L ++K++ A L +++++G+ P YT +I
Sbjct: 477 ALEVFKLMEHEGCH-PNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTLI 535
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ D A +E M+ +G TP + + +L L +G E
Sbjct: 536 QGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAE 580
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Query: 92 KADLLD---TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAE 148
KADL L L +Q +L+ AL + + + K ++ Y+ +I + K + A+
Sbjct: 627 KADLYTYSVLLQALCKQKKLNEALSILDQMTVS-GVKCNIVAYTIIISEMIKEGKHDHAK 685
Query: 149 ELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
LF E+ G P YT I Y ++G I++A M+ G TP +T+ I I
Sbjct: 686 SLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFINGC 745
Query: 209 ENAG 212
+ G
Sbjct: 746 GHMG 749
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
K DL YS ++ L K K++ A + ++ G+ + YT +I ++ G D A
Sbjct: 627 KADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKS 686
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRRD 223
+ M +SG P T+T+ I + G E L+ + RD
Sbjct: 687 LFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERD 729
>gi|110288710|gb|AAP52447.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|215694798|dbj|BAG89989.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 735
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 5/131 (3%)
Query: 86 RICRLLKADLLDTLTEL----RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141
R C+L+ + T L + D AL+V + KE KPD LY+ +I K
Sbjct: 97 RFCKLINNPKMSTFNMLLSVCANSQDFDGALQVMVLL-KEAGLKPDCKLYTTLISTCAKC 155
Query: 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF 201
++ E+F E+ G++P+ Y+ +I + G + KA Y M + P ++ F
Sbjct: 156 GKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVF 215
Query: 202 TILIRNLENAG 212
LI +G
Sbjct: 216 NALISACGESG 226
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 46/89 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
P +S ++ ++ + ++ A ++ LK+ GL PD ++YT +I + G +D E
Sbjct: 104 NPKMSTFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFE 163
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
+ M ++G P+ T++ LI AG+
Sbjct: 164 VFHEMVSAGIEPNVNTYSALIDGCAKAGQ 192
>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
Length = 691
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R E+D A ++ + + KP+L ++ M+ + K ++ A ++F E+ +EGL PD
Sbjct: 197 RAGEVDGAERLVGMML-DGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDG 255
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
Y ++G Y + G +A+ + M G P +TFT LI + AG E + R
Sbjct: 256 VSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVR 314
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD YS +I +L + K+++ A LF + K GL PD YT +I + + G +++A+
Sbjct: 428 PDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSL 487
Query: 186 YETMKASGCTPHKLTFTILIRNLE 209
++ M +G P +T+++LI L
Sbjct: 488 HDKMVKAGVLPDVVTYSVLINGLS 511
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 120 KEVWYKPDLSLYSDMI---LMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176
++ KP + Y+ +I M+G+ + A EL E++ +GL PD Y+ +I Y +
Sbjct: 352 RQCRIKPSVVCYNALINGYCMVGRMDE---ARELLHEMEAKGLKPDVVTYSTIISAYCKN 408
Query: 177 GMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
A E + M G P +T++ LIR L
Sbjct: 409 CDTHSAFELNQQMLEKGVLPDAITYSSLIRVL 440
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y P + Y+ ++L L + + A F + +G+ P+ Y +I G +A+
Sbjct: 112 YVPSVLAYNAVLLAL-SDASLTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEAL 170
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGE 213
M+ +GC P+ +T+ L+ AGE
Sbjct: 171 SILRDMRGAGCGPNVVTYNTLVAAFFRAGE 200
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 4/124 (3%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ +++ A KVF+ + +E PD Y+ ++ K A +F E+ ++G+ PD
Sbjct: 232 KAGKMEDARKVFDEMMRE-GLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDV 290
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG-EEELVAAVR- 221
+T +I V + G ++ A+ M+ G +++TFT LI G ++ + AVR
Sbjct: 291 VTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRG 350
Query: 222 -RDC 224
R C
Sbjct: 351 MRQC 354
>gi|449468059|ref|XP_004151739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 225
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
K D+ Y+ +I L K ++ A ELF +L +EGL D Y MI + +VG +DKA
Sbjct: 83 KLDIESYNCLIDGLCKAGKLETAWELFEKLYQEGLQSDVVTYNIMIHGFCKVGQVDKANI 142
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
+E M+ +GCTP +T+ L+ + + + V + IQ
Sbjct: 143 LFEKMEENGCTPDIITYNTLLCGFCQSNKSDEVVKLLHKMIQ 184
>gi|440798586|gb|ELR19653.1| pentatricopeptide repeat domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 535
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ P+L ++S ++ +LGK +Q A F E+++ GL P+T ++ +I G +D A
Sbjct: 124 HTPNLFVFSGLLQVLGKARQPDKALHYFAEIERSGLTPNTHCFSALIAALGTAGRVDDAE 183
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAG 212
+ M G P+ F+ +I L AG
Sbjct: 184 RHFAQMAQLGVVPNTHCFSAVIAALGTAG 212
>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + LD +++F+F R + + Y+ +I LGK +I AE LF E+ ++G
Sbjct: 403 LCKSGRLDDGMELFDFCRNK-GVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCAR 461
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL--ENAGEEEL 216
D+ Y +I + G ID+A+ + M+ GC TFTILI L E+ EE +
Sbjct: 462 DSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAI 518
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+ ++++Y+ +I KN + A LF +K EG +PD Y+ ++ + G +D ME
Sbjct: 355 RANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGME 414
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ + G + + + LI L AG E
Sbjct: 415 LFDFCRNKGVAINAMFYASLIDGLGKAGRIE 445
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE P L Y+ ++ L + I AE++F + + PDT Y MI Y + G +
Sbjct: 210 KENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKL 269
Query: 180 DKAMETYETMKASGCTPHKLTFTILIR 206
KAME + M+ P K+T+ LI+
Sbjct: 270 QKAMEKFRDMEMKNVKPDKITYMTLIQ 296
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 34/171 (19%), Positives = 72/171 (42%), Gaps = 6/171 (3%)
Query: 81 EGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK 140
E + CR A + + ++ A+++F ++ E ++PD YS ++ L K
Sbjct: 347 ETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNE-GFEPDAVTYSVLVNGLCK 405
Query: 141 NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT 200
+ ++ ELF + +G+ + Y +I + G I+ A +E M GC
Sbjct: 406 SGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYC 465
Query: 201 FTILIRNLENAGEEELVAAV-----RRDCIQYVEFPERFLEEVYQKHRKTQ 246
+ +I L G+ + A+ C Q V ++ ++++H+ +
Sbjct: 466 YNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEE 516
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 10/149 (6%)
Query: 70 MKLAKSSSKLEEGFQSRICRLLKADLLDTLT-------ELRRQNELDLALKVFNFVRKEV 122
+ L SS +E S CR L ELR + E+ A++ F + K+
Sbjct: 86 LNLLDGSSNMEHNLDS-FCRKFFVKLSPNFVTFVLQSVELREKPEV--AVRFFFWAGKQK 142
Query: 123 WYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKA 182
Y + + +I +L + + +F ELK GL +I + +G++++
Sbjct: 143 KYVHKIECHVSLIELLTFSADLVKIRLVFFELKDRGLLMTESAANSLIKSFGNLGLVEEL 202
Query: 183 METYETMKASGCTPHKLTFTILIRNLENA 211
+ + MK +G P T+ L+ L N+
Sbjct: 203 LWVWRRMKENGIDPSLYTYNFLVNGLVNS 231
>gi|296088470|emb|CBI37461.3| unnamed protein product [Vitis vinifera]
Length = 822
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
L++F ++ + PD+ +Y+ +I M + + EL E+ K GL+PD Y MI
Sbjct: 574 GLQIFKLMQSNGIF-PDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMI 632
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y + + KA++ +E +K P+ +TFTILI
Sbjct: 633 CGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTILI 667
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
LD A ++N + E PDL +YS +I L + ++ LF G+ D +++
Sbjct: 291 LDEAFSLYNLM-IEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFS 349
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
++ Y++VG + KA+E Y M G +P+ +T++ILI L G
Sbjct: 350 SIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNG 394
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 7/143 (4%)
Query: 76 SSKLEEG---FQSRICRLLKADLL---DTLTELRRQNELDLALKVFNFVRKEVWYKPDLS 129
+ KLEEG F + R +K D++ + R +L A++V+ + KE P++
Sbjct: 323 AGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKE-GISPNVV 381
Query: 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM 189
YS +I L +N ++ A +F ++ K+GL+P Y+ +I + + + Y M
Sbjct: 382 TYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIM 441
Query: 190 KASGCTPHKLTFTILIRNLENAG 212
G P + ++LI L G
Sbjct: 442 LRKGHVPDVVVCSMLINGLSRQG 464
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 141 NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT 200
QI +A + F + + G P+ ++ +I VY + +D+A Y M G P +
Sbjct: 253 GNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVI 312
Query: 201 FTILIRNLENAGEEE 215
++ILI L AG+ E
Sbjct: 313 YSILINGLFRAGKLE 327
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L Q LD AL +F + K+ + PD +Y +I K + A ++F ++ G+ P
Sbjct: 530 LAEQGRLDEALALFFQLLKK-GFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFP 588
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
D +Y +I ++ + G ++ +E + G P +T+ +I
Sbjct: 589 DICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMI 632
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 50/102 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ ++ L + ++ A LF +L K+G PD +Y +I + + ++
Sbjct: 518 PDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQI 577
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227
++ M+++G P + +LI G E V + R+ I+Y
Sbjct: 578 FKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKY 619
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 113 KVFNFVRKEVWY--KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
V +R+ + Y +PD+ Y+ MI K + A +LF LK P+ +T +I
Sbjct: 608 NVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTILI 667
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y + G +D AM + +M G P+ LT++ LI
Sbjct: 668 DAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLI 702
>gi|9757789|dbj|BAB08287.1| unnamed protein product [Arabidopsis thaliana]
Length = 663
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R ++ D +K + + + ++ +L YS MI L K ++ + E+KKEGL P
Sbjct: 372 LCRHDKSDHLIKAYELLSSKGYFS-ELQSYSLMISFLCKAGRVRESYTALQEMKKEGLAP 430
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
D +Y +I + MI A + ++ M GC + T+ +LIR L GE E
Sbjct: 431 DVSLYNALIEACCKAEMIRPAKKLWDEMFVEGCKMNLTTYNVLIRKLSEEGEAE 484
Score = 36.6 bits (83), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 48/101 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+SLY+ +I K + I A++L+ E+ EG + Y +I + G ++++
Sbjct: 430 PDVSLYNALIEACCKAEMIRPAKKLWDEMFVEGCKMNLTTYNVLIRKLSEEGEAEESLRL 489
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
++ M G P + + LI L + E V R C++
Sbjct: 490 FDKMLERGIEPDETIYMSLIEGLCKETKIEAAMEVFRKCME 530
>gi|159464329|ref|XP_001690394.1| hypothetical protein CHLREDRAFT_114572 [Chlamydomonas reinhardtii]
gi|158279894|gb|EDP05653.1| predicted protein [Chlamydomonas reinhardtii]
Length = 287
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ + ++AL++F+ + KE KP++ Y+ +I A ELF +++ +G
Sbjct: 182 ISACEKAGRWEMALELFSKMHKENC-KPNVVTYNSLIAACSHGGHWEKASELFEQMQTQG 240
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
PD+ Y +I Y + G +A++ +E M++ GC P F L+
Sbjct: 241 CKPDSITYCGLITAYERGGQWRRALKAFEQMQSQGCHPDAAVFNSLM 287
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 104 RQNELDLALKVF-NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
++ +++ AL +F + +R+ + ++ YS +I K + MA ELF ++ KE P+
Sbjct: 152 KKGQVEKALDIFRDMIRRGC--ERNVITYSSLISACEKAGRWEMALELFSKMHKENCKPN 209
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
Y +I G +KA E +E M+ GC P +T+ LI E G+
Sbjct: 210 VVTYNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQ 260
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ MI G ++Q+ A EL E++ G+D + Y+ ++ V ++ +D A + Y+ M
Sbjct: 3 YTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQML 62
Query: 191 ASGCTPHKLTFTILI 205
GC+P+ +T+ ILI
Sbjct: 63 EEGCSPNLVTYNILI 77
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 1/123 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ NELDLA V+ + +E P+L Y+ +I + ++ L L + G+ +
Sbjct: 47 KANELDLAQDVYKQMLEE-GCSPNLVTYNILIDVEASKRKTTERRRLAVALVRSGIQAEV 105
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
R Y +I + G ++A++ YE M A+G P T+T LI G+ E + RD
Sbjct: 106 RTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRD 165
Query: 224 CIQ 226
I+
Sbjct: 166 MIR 168
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+ ++ Y+ +I K+ Q A +++ ++ G+ P YT +I Y + G ++KA++
Sbjct: 102 QAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALD 161
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
+ M GC + +T++ LI E AG E+
Sbjct: 162 IFRDMIRRGCERNVITYSSLISACEKAGRWEMA 194
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ + + + ALKV+ + KP + Y+ +I GK Q+ A ++F ++ + G
Sbjct: 112 ISACNKSGQPEQALKVYEKMLA-AGVKPSATTYTALISAYGKKGQVEKALDIFRDMIRRG 170
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ + Y+ +I + G + A+E + M C P+ +T+ LI + G E
Sbjct: 171 CERNVITYSSLISACEKAGRWEMALELFSKMHKENCKPNVVTYNSLIAACSHGGHWE 227
>gi|30684737|ref|NP_196912.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635762|sp|Q9FMU2.2|PP380_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g14080
gi|332004602|gb|AED91985.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 634
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R ++ D +K + + + ++ +L YS MI L K ++ + E+KKEGL P
Sbjct: 372 LCRHDKSDHLIKAYELLSSKGYFS-ELQSYSLMISFLCKAGRVRESYTALQEMKKEGLAP 430
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
D +Y +I + MI A + ++ M GC + T+ +LIR L GE E
Sbjct: 431 DVSLYNALIEACCKAEMIRPAKKLWDEMFVEGCKMNLTTYNVLIRKLSEEGEAE 484
Score = 36.6 bits (83), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 48/101 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+SLY+ +I K + I A++L+ E+ EG + Y +I + G ++++
Sbjct: 430 PDVSLYNALIEACCKAEMIRPAKKLWDEMFVEGCKMNLTTYNVLIRKLSEEGEAEESLRL 489
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
++ M G P + + LI L + E V R C++
Sbjct: 490 FDKMLERGIEPDETIYMSLIEGLCKETKIEAAMEVFRKCME 530
>gi|224158331|ref|XP_002337959.1| predicted protein [Populus trichocarpa]
gi|222870078|gb|EEF07209.1| predicted protein [Populus trichocarpa]
Length = 163
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
DLA V + + K+ Y D+ +Y+ +I LGK +I A LF ++K GL+PD Y
Sbjct: 5 DLASSVLDKLMKQGGY-LDIVMYNTLIDALGKAGRIDEANNLFEQMKISGLNPDVVTYNI 63
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTIL 204
MI V+ + G + A + + M +GC P+ +T T L
Sbjct: 64 MIEVHSKTGRLKDAYKFLKMMLDAGCLPNHVTDTTL 99
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 146 MAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+A + +L K+G D +Y +I + G ID+A +E MK SG P +T+ I+I
Sbjct: 6 LASSVLDKLMKQGGYLDIVMYNTLIDALGKAGRIDEANNLFEQMKISGLNPDVVTYNIMI 65
>gi|218186396|gb|EEC68823.1| hypothetical protein OsI_37392 [Oryza sativa Indica Group]
Length = 1370
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ P L Y +I LGK + LF E++K G P+ ++Y +I +AM
Sbjct: 1027 FLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCNCRSATQAM 1086
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAG-----EEELVAAVRRD 223
+ M ASGC P +TF L+ L + G E L A+RR+
Sbjct: 1087 VILKQMFASGCDPDIITFNTLMTGLCHEGHVRKAEHFLREAIRRE 1131
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 45/107 (42%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ ++ ++ L + AE E + L+P+ YT +I + G + A +
Sbjct: 1099 PDIITFNTLMTGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDL 1158
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
M G TP +TF LI L AG+ VR + FP+
Sbjct: 1159 LVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPD 1205
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 44/82 (53%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+++Y+ +I L K + + A+ + E+ ++ + PD VY +I +++ + A +
Sbjct: 1204 PDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKI 1263
Query: 186 YETMKASGCTPHKLTFTILIRN 207
+E M+ G P ++ +I+
Sbjct: 1264 FEFMEHKGVCPDIVSCNAMIKG 1285
>gi|255660928|gb|ACU25633.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
Length = 481
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K++ AE+ F E+K++ +DP YT +I Y + +D A+
Sbjct: 183 PDVVTYNTMINGYTRVKKMEEAEKYFLEMKEKKIDPTVVTYTTLIKGYASIDRVDDALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L +A
Sbjct: 243 VEEMKGLGIKPNAITYSTLLPGLCDA 268
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 143 QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFT 202
++ A F +LK + PD Y MI Y +V +++A + + MK P +T+T
Sbjct: 165 KVETANRFFEDLKSREITPDVVTYNTMINGYTRVKKMEEAEKYFLEMKEKKIDPTVVTYT 224
Query: 203 ILIR 206
LI+
Sbjct: 225 TLIK 228
>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
Length = 636
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Query: 99 LTELRRQNELDLALKVF-NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
L L + E DL+ F + V + P + Y+ MI + K + A LF ++KK
Sbjct: 104 LHRLSKAGEGDLSRDFFRDMVGAGI--APTVFTYNIMIGHVCKEGDMLTARSLFEQMKKM 161
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
GL PD Y +I Y ++G++D+++ +E MK GC P +T+ LI +
Sbjct: 162 GLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSF 212
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++++Y+ +I L KN I A++LF E++ + + PD YT MI L+ G +A+
Sbjct: 479 QPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEALN 538
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
M G +T L+ L G+
Sbjct: 539 MRNKMMEMGIELDLYAYTSLVWGLSQCGQ 567
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
+D A+++FN +R E KPD+ L+ ++ L ++ + + E+K+ G+ + +YT
Sbjct: 358 MDKAMELFNEMR-EKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYT 416
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
++ Y + G +A+ E M+ G +TF LI L
Sbjct: 417 TLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGL 457
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ Y+ +I K K + A E F E+K + L P+ Y+ +I + GM+ A++
Sbjct: 199 EPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIK 258
Query: 185 TYETMKASGCTPHKLTFTILI 205
+ M G P++ T++ LI
Sbjct: 259 FFVDMTRVGLLPNEFTYSSLI 279
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 127 DLSLYSDMILMLGKNKQIAM--AEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
DL++ + L+ G ++ M AEELF + K G+ P+ + YT +I +++V +DKAME
Sbjct: 304 DLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAME 363
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
+ M+ P L + ++ L
Sbjct: 364 LFNEMREKDIKPDILLWGTIVWGL 387
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K++ PD+ Y+ +I GK + + LF E+K G +PD Y +I + + +
Sbjct: 159 KKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGM 218
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERF 234
+A E + MK P+ ++++ LI L G ++ D + P F
Sbjct: 219 LRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEF 273
>gi|388499386|gb|AFK37759.1| unknown [Lotus japonicus]
Length = 500
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
+ALKVFN + KP++ Y+ ++ + AEE+F ++++ GL+PD Y +
Sbjct: 285 MALKVFNEMLSHKC-KPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYSYNAL 343
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
+ Y + G A E + M+ GC P + ++ IL+ AG AV D
Sbjct: 344 MEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNILVDAYGRAGFLNDAEAVFED 397
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP Y+ +I + GK+ + MA ++F E+ P+ YT ++ + + G+ +KA E
Sbjct: 264 KPSTETYTMLINLYGKDGKSFMALKVFNEMLSHKCKPNICTYTALVNAFAREGLCEKAEE 323
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+E M+ +G P ++ L+ AG
Sbjct: 324 VFEQMQEAGLEPDVYSYNALMEAYSRAG 351
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%)
Query: 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM 189
+Y+ I L K AEE+F +K++G P T YT +I +Y + G A++ + M
Sbjct: 234 VYNSYINGLMKGGNPNKAEEIFLRMKRDGCKPSTETYTMLINLYGKDGKSFMALKVFNEM 293
Query: 190 KASGCTPHKLTFTILIRNLENAG 212
+ C P+ T+T L+ G
Sbjct: 294 LSHKCKPNICTYTALVNAFAREG 316
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%)
Query: 147 AEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
AE +F E+K GL VY I ++ G +KA E + MK GC P T+T+LI
Sbjct: 216 AEAVFVEMKNYGLPSSAVVYNSYINGLMKGGNPNKAEEIFLRMKRDGCKPSTETYTMLIN 275
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 4/134 (2%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
D+L +LR + + D + + ++ +K D+ Y+ +I G+ AE + +
Sbjct: 128 DILTVSVQLRMRKQWDSIISICRWILLRSSFKQDVICYNLLIDAFGQKFLYKEAESTYLQ 187
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
L + P+ Y +I Y G+++KA + MK G + + I L G
Sbjct: 188 LLEARCIPNEDTYALLIKAYCLSGLLEKAEAVFVEMKNYGLPSSAVVYNSYINGLMKGGN 247
Query: 214 ----EELVAAVRRD 223
EE+ ++RD
Sbjct: 248 PNKAEEIFLRMKRD 261
Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 42/94 (44%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E +PD+ Y+ ++ + A E+F ++ G +PD Y ++ Y + G +
Sbjct: 329 QEAGLEPDVYSYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNILVDAYGRAGFL 388
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ A +E MK G TP + +L+ G
Sbjct: 389 NDAEAVFEDMKRVGITPTMKSHMVLLSAFSKTGN 422
>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 1011
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A VF F+ + D+ YS +I L +N ++ A +F EL+++GL P+ Y +I
Sbjct: 584 AFSVFRFILSRRVLQ-DVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLI 642
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ G +DKA + E M G P +T+ ILI L AGE E
Sbjct: 643 SGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIE 687
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 99 LTELRRQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
L +L + N+++L KVF+ +V PD+ Y++MI K + A+ + E+ ++
Sbjct: 187 LGDLLKGNKVELFWKVFDGMCAHKVL--PDVYTYTNMISAHCKVGNVKDAKRVLLEMGEK 244
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
G P+ Y +IG + ++D+A+E +M G P T+ ILI
Sbjct: 245 GCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGF 295
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Query: 103 RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
R+ L A+ VF K ++P L + ++ L K ++ + ++F + + PD
Sbjct: 156 RKMGFLVEAVNVF-LGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPD 214
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
YT MI + +VG + A M GC+P+ +T+ ++I L
Sbjct: 215 VYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGL 260
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 42/82 (51%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ P+ Y+ +I K + A+ L+ E+++ + P + YT ++ Y +G + +
Sbjct: 805 FIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVS 864
Query: 184 ETYETMKASGCTPHKLTFTILI 205
+E M A G P K+T+ ++I
Sbjct: 865 ALFEEMVAKGIEPDKMTYYVMI 886
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R ++ A +F+ + +E P+ Y+ +I K + A +L E+ +G++P
Sbjct: 610 LSRNGKMHEAFGIFSEL-QEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINP 668
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
D Y +I + G I++A ++ ++ G TP+ +T+ ++
Sbjct: 669 DIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMV 712
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 54/99 (54%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
+L +++ ++ + K ++ A E+ E+ ++G++PD++ Y+ +I + + + +A E
Sbjct: 354 NLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELL 413
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCI 225
+ MK P LT++++I L G + A+ R+ +
Sbjct: 414 DEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMV 452
>gi|224085974|ref|XP_002307761.1| predicted protein [Populus trichocarpa]
gi|222857210|gb|EEE94757.1| predicted protein [Populus trichocarpa]
Length = 563
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E + PD +S ++ LG+ +I A +F ++++G PDT VY MI ++ VG
Sbjct: 299 EEDGFSPDCLSFSYLLEGLGRAGKIEDAVMIFGSMEEKGCVPDTNVYNAMISNFISVGNF 358
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENA 211
D+ M+ Y + + C P+ T+T +I L A
Sbjct: 359 DECMKYYRCLLSKNCDPNIDTYTRMISGLIKA 390
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 68/136 (50%), Gaps = 10/136 (7%)
Query: 93 ADLLDTLTE-LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELF 151
A+ L+ L + L R++ + A FN V+ ++ + + Y+ +I K +++ + +F
Sbjct: 238 AESLNVLLQCLCRRSHVGAANSYFNSVKGKIPF--NCMTYNVIIGGWSKFGRVSEMQRVF 295
Query: 152 CELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
E++++G PD ++ ++ + G I+ A+ + +M+ GC P + +I N +
Sbjct: 296 EEMEEDGFSPDCLSFSYLLEGLGRAGKIEDAVMIFGSMEEKGCVPDTNVYNAMISNFISV 355
Query: 212 GEEELVAAVRRDCIQY 227
G + +C++Y
Sbjct: 356 GNFD-------ECMKY 364
>gi|449458524|ref|XP_004146997.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Cucumis sativus]
Length = 481
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A+++FN + K +K D YS +I L K ++ +A E F +L +EGL P+ MI
Sbjct: 360 AMELFNEL-KSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMI 418
Query: 171 GVYLQVGMIDKA---METYETMKASGCTPHKLTFTILIRNL-ENAGEEELVAAVRR 222
+ +V +DKA E E M+ +GCTP +T+ L+R E+ EE+V + +
Sbjct: 419 HGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCESNKLEEVVNLLHK 474
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAM---AEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
Y PD+ Y+ +I L ++ A+E+F E+K +G+ P+ Y+ ++ + G ++
Sbjct: 156 YIPDIVTYNTLIKGLYGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLE 215
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
++ + M G P+ + F +LI L G+ +++ R+
Sbjct: 216 ESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKIGDLSSARK 257
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 50/96 (52%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
+V +P++ YS ++ L + ++ A +LF +K G+ D+ +Y + + G++
Sbjct: 299 QVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLF 358
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
+AME + +K+ +++ LI L AG+ E+
Sbjct: 359 EAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEI 394
>gi|255660940|gb|ACU25639.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 484
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ M+ + K++ AE+ F E+K ++P YT +I Y+ V +D A+
Sbjct: 183 PDVVTYNTMVNGYCRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALRF 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L NA
Sbjct: 243 VEEMKGFGMKPNAITYSTLLPGLCNA 268
>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
Length = 660
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 51/89 (57%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ +YS +I L + ++ A+E+ CE+ +G P+ Y+ +I + + G KA+
Sbjct: 395 QPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIR 454
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
++ M + C P+++ +++LI L G+
Sbjct: 455 VWKEMAKNNCVPNEICYSVLIHGLCEDGK 483
Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
YS +I L K ++ A L+ ++ ++G P+ VY+ +I + G +D+A E M
Sbjct: 366 YSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMV 425
Query: 191 ASGCTPHKLTFTILIRNLENAGEEE 215
GCTP+ T++ LI+ G +
Sbjct: 426 NKGCTPNAFTYSSLIKGFFKTGNSQ 450
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ ++ +I + K + A E+F E+ + +PD Y ++ + ID+A+
Sbjct: 186 PNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLL 245
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+ M+ GC P +TF +LI L G+
Sbjct: 246 LDEMQIEGCFPSSVTFNVLINGLCKKGD 273
Score = 36.6 bits (83), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L +++ +D A+ + + ++ E + P ++ +I L K + +L + +G P
Sbjct: 233 LCKEDRIDEAVLLLDEMQIEGCF-PSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVP 291
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ Y +I G +DKA+ + M AS C P+ +T+ LI L G
Sbjct: 292 NEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQG 342
>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
Length = 895
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
+ L R +++A V V K PDL +YS +I L K + A L E+ KE
Sbjct: 634 VIRNLSRSENMEVAFMVLTEVEKN-GLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKE 692
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
GL+P Y +I + + G I +A ++++ A G P+ +T+T LI
Sbjct: 693 GLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALI 740
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 57/110 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL Y+ +I L ++ AEE + +++K GL PD Y+ +I Y + G ++KA +
Sbjct: 521 PDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQL 580
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFL 235
M SG P+ T+T L+ + + E V+++ + + + P+ +
Sbjct: 581 LRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHI 630
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 7/139 (5%)
Query: 113 KVFNFVRKEVWY--KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
+ F F + V Y PD Y ++ L K ++ A+ L E+ GL P+ VY ++
Sbjct: 296 EAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLV 355
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEF 230
+++ G +A + + M ++G P+K+ + LIR L G+ + + ++ I+
Sbjct: 356 DGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLR 415
Query: 231 PERF-----LEEVYQKHRK 244
P+ F ++ +Q+H K
Sbjct: 416 PDTFTYNPLMQGHFQQHDK 434
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 46/89 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD +Y +I L +++ + +A + E++K GL PD +Y+ +I ++ ++KA+
Sbjct: 625 KPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVG 684
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
+ M G P + + LI +G+
Sbjct: 685 LLDEMAKEGLEPGIVCYNALIDGFCRSGD 713
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP+ +Y+ +I+ K I++A E ++ K + PD Y +I VG +++A E
Sbjct: 485 KPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEE 544
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
Y ++ G P + T++ LI G E
Sbjct: 545 YYAQVQKRGLVPDEFTYSGLIHGYCKTGNLE 575
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P + Y+ +I ++ I+ A +F + +GL P+ YT +I + G I A +
Sbjct: 695 EPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFD 754
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
Y+ M G P + +L +A + E
Sbjct: 755 LYKEMLDRGIAPDAFVYNVLATGCSDAADLE 785
>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic [Vitis vinifera]
Length = 1022
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 52/93 (55%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + YS +I + ++ A+ L E++KEGL P+ YT +IG Y ++G +DK +
Sbjct: 731 PTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNV 790
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
+ M + P+K+T+T++I +G+ + A
Sbjct: 791 LQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAA 823
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L+ L + NEL+ + VF +R+ V PD+ L+S I K ++ A +LF +++K G
Sbjct: 286 LSSLVKANELEKSYWVFETMRQGV--SPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLG 343
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ P+ Y +I + G +D+A E M G +T+++LI L
Sbjct: 344 VSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGL 393
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 7/145 (4%)
Query: 77 SKLEEGFQSRICRLLKADLLDTLT------ELRRQNELDLALKVFNFVRKEVWYKPDLSL 130
K+EEGF+ R + + DT T + R +LD A+ ++N + P++
Sbjct: 607 GKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLV-PNVYT 665
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y MI K +I E+LF EL + L+ ++ VY +I Y + G +A + ++ M+
Sbjct: 666 YGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMR 725
Query: 191 ASGCTPHKLTFTILIRNLENAGEEE 215
+ G P T++ LI + N G E
Sbjct: 726 SKGIPPTTATYSSLIHGMCNIGRME 750
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 40/75 (53%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ +I K ++ +L E+ K+G++PDT Y +I ++G +D+A+ + K
Sbjct: 596 YNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECK 655
Query: 191 ASGCTPHKLTFTILI 205
+ P+ T+ ++I
Sbjct: 656 SRDLVPNVYTYGVMI 670
>gi|242041823|ref|XP_002468306.1| hypothetical protein SORBIDRAFT_01g043390 [Sorghum bicolor]
gi|241922160|gb|EER95304.1| hypothetical protein SORBIDRAFT_01g043390 [Sorghum bicolor]
Length = 519
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E+ +PDL Y+ +I KN+ + A +L E++++ + PD YT +IG +G
Sbjct: 240 RELGVEPDLVTYNSLIDCHCKNRDVEKAYKLLDEMREKDISPDIITYTSLIGGLGLIGQP 299
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNL 208
DKA + + M GC+P + IRN
Sbjct: 300 DKARDLLKEMHELGCSPDVPAYNAAIRNF 328
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I LG Q A +L E+ + G PD Y I ++ + A
Sbjct: 281 PDIITYTSLIGGLGLIGQPDKARDLLKEMHELGCSPDVPAYNAAIRNFVIAKRLGDAFAL 340
Query: 186 YETMKASGCTPHKLTFTILIR 206
+ M + G P+ T+ + R
Sbjct: 341 MDQMASKGLMPNPTTYNLFFR 361
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%)
Query: 136 LMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCT 195
++L K AE E+++ G++PD Y +I + + ++KA + + M+ +
Sbjct: 221 ILLSGWKSAEDAEAFVAEMRELGVEPDLVTYNSLIDCHCKNRDVEKAYKLLDEMREKDIS 280
Query: 196 PHKLTFTILIRNLENAGEEE 215
P +T+T LI L G+ +
Sbjct: 281 PDIITYTSLIGGLGLIGQPD 300
>gi|255554042|ref|XP_002518061.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542657|gb|EEF44194.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 403
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 5/139 (3%)
Query: 81 EGFQSRICRLL-KADLLDTLTELRRQNELDLALKVFNFVR----KEVWYKPDLSLYSDMI 135
E + R+ +LL + + L LR A+K F F K + P+L LY+ +I
Sbjct: 154 ERMRERLLQLLCQGNFLPKKNILRFSANSPEAMKFFAFKLMYKIKGTRFMPNLYLYNGII 213
Query: 136 LMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCT 195
+I A F +++ EGL P+ +T +IG + + G ID A+E + M A+ +
Sbjct: 214 AGFCWADRIKDAYIQFEKMQSEGLCPNEVTFTILIGAHCRAGEIDHAIELFNLMNANAYS 273
Query: 196 PHKLTFTILIRNLENAGEE 214
P K+T++ L++ L A E
Sbjct: 274 PDKVTYSTLLKGLCKASRE 292
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 33/69 (47%)
Query: 147 AEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
AE LF + K G+ PD VY MI Y + G I +A + +E M P ++T LI
Sbjct: 4 AETLFQRMLKAGVHPDETVYVTMINGYFRSGRILEAHQLFEKMIQYAFPPSLDSYTALIS 63
Query: 207 NLENAGEEE 215
L E E
Sbjct: 64 GLVKNNEIE 72
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R E+D A+++FN + Y PD YS ++ L K + A LF + K G P+
Sbjct: 253 RAGEIDHAIELFNLMNANA-YSPDKVTYSTLLKGLCKASREIDALSLFFTMHKRGFFPNK 311
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT 200
Y +I ++ + A + +E M A P + T
Sbjct: 312 ASYENLIRLFCARHLSIPAFKLFEEMLAHNYLPRQYT 348
>gi|356540106|ref|XP_003538531.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14190,
chloroplastic-like [Glycine max]
Length = 506
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP L Y+ +I L + + + A E+K+ GL+ D+ Y +IG Y + M D+ E
Sbjct: 167 KPSLDTYNPIIHGLSREGKFSDALRFIDEMKESGLELDSETYDGLIGAYGKFQMYDEMGE 226
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ M+ GC+P +T+ ILI+ G
Sbjct: 227 CVKKMELEGCSPDPITYNILIQEYAGGG 254
>gi|255660906|gb|ACU25622.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
Length = 484
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I + K++ AE+ F E+K ++P YT +I Y+ V +D A+
Sbjct: 183 PDVVTYNTIINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L NA
Sbjct: 243 VEEMKGFGIKPNAITYSTLLPGLCNA 268
Score = 36.6 bits (83), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 38/75 (50%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ + ++ + + MA+ F ++ EG++P + MI + G ++ A +E MK
Sbjct: 118 YNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177
Query: 191 ASGCTPHKLTFTILI 205
+ +P +T+ +I
Sbjct: 178 SREISPDVVTYNTII 192
>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
Length = 629
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 8/131 (6%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LLD L + +L+ AL VF +++K +PD+ Y+ MI + K ++ +LFC L
Sbjct: 471 LLDGLC---KYGKLEKALVVFEYLQKSKM-EPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 526
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI----RNLEN 210
+G+ P+ +YT MI + + G+ ++A + MK G P + LI R+ +
Sbjct: 527 SLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDK 586
Query: 211 AGEEELVAAVR 221
A EL+ +R
Sbjct: 587 AASAELIKEMR 597
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 116 NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175
N + +++ P++ +S +I K ++ AE+L+ E+ K +DPD Y+ +I +
Sbjct: 315 NMIERKI--NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCM 372
Query: 176 VGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
+D+A +E M + C P+ +T+ LI+ A
Sbjct: 373 HDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKA 408
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 105 QNELDLALKVFNF-VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ LD A +F + K+ + P++ Y+ +I K K++ ELF E+ + GL +T
Sbjct: 373 HDRLDEAKHMFELMISKDCF--PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNT 430
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
Y +I Q G D A + ++ M + G P +T++IL+ L G+ E
Sbjct: 431 VTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLE 482
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+++L LAL V + K + Y+PD+ S ++ +K+I+ A L ++ + G PDT
Sbjct: 127 RRSQLPLALAVLGKMMK-LGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDT 185
Query: 164 RVYTEMI-GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+ +I G++L +A+ + M GC P +T+ ++ L G+ +L ++
Sbjct: 186 VTFNTLIHGLFLH-NKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSL 242
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 46/85 (54%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ +I L + MA+++F ++ +G+ PD Y+ ++ + G ++KA+ +E ++
Sbjct: 433 YNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQ 492
Query: 191 ASGCTPHKLTFTILIRNLENAGEEE 215
S P T+ I+I + AG+ E
Sbjct: 493 KSKMEPDIYTYNIMIEGMCKAGKVE 517
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 4/150 (2%)
Query: 67 VHAMKLAKSSSKLEEGFQSRICRLLKADLLD---TLTELRRQNELDLALKVFNFVRKEVW 123
+H + L +S+ + R + DL+ + L ++ ++DLAL + + K
Sbjct: 192 IHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKG-K 250
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ D+ +Y+ +I L K K I A LF +++ +G+ PD Y +I G A
Sbjct: 251 IEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDAS 310
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGE 213
M P+ +TF+ LI G+
Sbjct: 311 RLLSNMIERKINPNVVTFSALIDAFVKEGK 340
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + + D+A K+F + + PD+ YS ++ L K ++ A +F L+K ++P
Sbjct: 440 LFQAGDCDMAQKIFKKMVSD-GVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEP 498
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
D Y MI + G ++ + + ++ G P+ + +T +I G +E A+
Sbjct: 499 DIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALF 558
Query: 222 RD 223
R+
Sbjct: 559 RE 560
>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP+L YS +IL+L K+ ++ E++ E+ K G+ PD +YT +I + ++G A +
Sbjct: 177 KPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYK 236
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
+ M+A P + F+ LI L +G+
Sbjct: 237 LFSEMEAREIVPDSIAFSALICGLSGSGK 265
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD +S +I L + ++ A++LF E+ K+G +PD YT +I Y ++G + KA
Sbjct: 248 PDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFL 307
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+ M G TP+ +T+T L L +GE
Sbjct: 308 HNQMVQIGLTPNVVTYTALADGLCKSGE 335
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 102 LRRQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD 160
L + ELD A ++ + RK + + ++S Y+ ++ L K I A +L E+K+ GL
Sbjct: 330 LCKSGELDTANELLHEMCRKGL--QLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLH 387
Query: 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
PDT YT ++ Y + G + KA E M G P +TF +L+ L +G+ E
Sbjct: 388 PDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLE 442
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 47/93 (50%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
++ P++ Y+ + L K+ ++ A EL E+ ++GL + Y ++ + G I
Sbjct: 313 QIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNIL 372
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+A++ E MK +G P +T+T L+ GE
Sbjct: 373 QAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGE 405
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 5/134 (3%)
Query: 104 RQNELDLALKVFN-FVRKEV-WYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
+++ L + LKVF+ F + V W ++ + + LGK ++ A L ++ +G P
Sbjct: 87 KRDMLGMVLKVFSEFPQLGVCWNTESYNILMNSLFRLGKIRE---AHHLLMRMEFKGCIP 143
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
D YT +I Y VG + K ++ + M+ G P+ T++ +I L +G+ V
Sbjct: 144 DVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVL 203
Query: 222 RDCIQYVEFPERFL 235
R+ ++ FP+ +
Sbjct: 204 REMMKRGVFPDHVI 217
>gi|48525335|gb|AAT44969.1| At2g36240 [Arabidopsis thaliana]
gi|50198948|gb|AAT70477.1| At2g36240 [Arabidopsis thaliana]
Length = 379
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 58/112 (51%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R ++D AL F+ +++ + KP++ +Y+ ++ K+ + A + + KE PD
Sbjct: 51 RARKMDYALLAFDTMKRLIDGKPNVGVYNTVVNGYVKSGDMDKALRFYQRMGKERAKPDV 110
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ +I Y + D A++ + MK GC P+ ++F LIR ++G+ E
Sbjct: 111 CTFNILINGYCRSSKFDLALDLFREMKEKGCEPNVVSFNTLIRGFLSSGKIE 162
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ ++D AL+ + + KE KPD+ ++ +I ++ + +A +LF E+K++G +P+
Sbjct: 87 KSGDMDKALRFYQRMGKE-RAKPDVCTFNILINGYCRSSKFDLALDLFREMKEKGCEPNV 145
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
+ +I +L G I++ ++ M GC + T IL+ L G + + D
Sbjct: 146 VSFNTLIRGFLSSGKIEEGVKMAYEMIELGCRFSEATCEILVDGLCREGRVDDACGLVLD 205
Query: 224 CIQYVEFPERF 234
+ P F
Sbjct: 206 LLNKRVLPSEF 216
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 11/142 (7%)
Query: 75 SSSKLEEGFQSRI------CRLLKADLLDTLTELRRQNELDLALK-VFNFVRKEVWYKPD 127
SS K+EEG + CR +A + L R+ +D A V + + K V P
Sbjct: 157 SSGKIEEGVKMAYEMIELGCRFSEATCEILVDGLCREGRVDDACGLVLDLLNKRVL--PS 214
Query: 128 LSLYSDMILML-GKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
Y ++ L G+NK + A E+ EL K+G P T ++ + G +KA
Sbjct: 215 EFDYGSLVEKLCGENKAVR-AMEMMEELWKKGQTPCFIACTTLVEGLRKSGRTEKASGFM 273
Query: 187 ETMKASGCTPHKLTFTILIRNL 208
E M +G P +TF +L+R+L
Sbjct: 274 EKMMNAGILPDSVTFNLLLRDL 295
>gi|115475728|ref|NP_001061460.1| Os08g0290000 [Oryza sativa Japonica Group]
gi|38175588|dbj|BAD01297.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|38175668|dbj|BAD01373.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113623429|dbj|BAF23374.1| Os08g0290000 [Oryza sativa Japonica Group]
gi|125602875|gb|EAZ42200.1| hypothetical protein OsJ_26764 [Oryza sativa Japonica Group]
Length = 806
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ Y +I K K I A+E EL GL P+ +Y +IG Y + G I A++
Sbjct: 569 QPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAID 628
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
ETMK++G P +T+ L+ + +AG
Sbjct: 629 AVETMKSNGIQPTNVTYGSLMYWMCHAG 656
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L R +LD A +VF+ +R+ + Y+ MI L K ++ E+ EL + G
Sbjct: 192 LEALVRAGQLDAAREVFDEMRESRNVALNEYSYTAMIKALCKAGKVDAGFEMLAELWRAG 251
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL---ENAGEEE 215
L P Y ++ + G +++A M+ G TP +TF ILI L E GE
Sbjct: 252 LQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVG 311
Query: 216 LV 217
+V
Sbjct: 312 IV 313
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P Y ++ + + A+ +F + ++ +D YT MI Y ++G + +A+
Sbjct: 639 QPTNVTYGSLMYWMCHAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVA 698
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+E M++ G +P+KLT+T L+ +G E
Sbjct: 699 YFEEMRSRGISPNKLTYTTLMYAYSKSGNSE 729
>gi|357122161|ref|XP_003562784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Brachypodium distachyon]
Length = 791
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 114 VFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY 173
VF+ +R + PD+ ++ ++ + G+N +F E+KK G P+ Y +I Y
Sbjct: 409 VFDEIR-SAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSY 467
Query: 174 LQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ G+ D+AME Y+ M +G P T+ ++ L G E
Sbjct: 468 SRCGLFDQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWE 509
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD Y+ MI G+ Q+ A LF E+K GL PD Y + Y+ M ++A++
Sbjct: 664 RPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTYNIFVKSYVANSMFEEAID 723
Query: 185 TYETMKASGCTPHKLTFTILIR 206
M GC P++ T+ +++
Sbjct: 724 LVRYMVTHGCKPNERTYNTILQ 745
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 14/152 (9%)
Query: 55 RSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKV 114
R R L EA + M+ A GF+ L LLD + RR +E LK
Sbjct: 258 RRRALYKEAAKVFDEMRAA--------GFEPDKVTL--NSLLDVYGKARRYDEAIGVLKE 307
Query: 115 FNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYL 174
++ P + Y+ +I K+ + A +L E++ +G++PD YT ++
Sbjct: 308 M----EQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVITYTTLVSGLD 363
Query: 175 QVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
+ G ID A+ TY M +GC P+ T+ LI+
Sbjct: 364 RAGKIDAAIGTYNEMLRNGCKPNLCTYNALIK 395
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 103 RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
RR+ A KVF+ +R ++PD + ++ + GK ++ A + E+++ G P
Sbjct: 258 RRRALYKEAAKVFDEMRA-AGFEPDKVTLNSLLDVYGKARRYDEAIGVLKEMEQGGCPPS 316
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
Y +I Y++ G++++A + E M+ G P +T+T L+ L+ AG+
Sbjct: 317 VVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVITYTTLVSGLDRAGK 367
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ L R ++D A+ +N + + KP+L Y+ +I + G + +F E++ G
Sbjct: 359 VSGLDRAGKIDAAIGTYNEMLRN-GCKPNLCTYNALIKLHGVRGKFPEMMIVFDEIRSAG 417
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
PD + ++ V+ Q G+ + ++ MK SG P + T+ LI + G
Sbjct: 418 FVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCG 471
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 1/113 (0%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ ++ M + E + E+K PD Y MI Y + G + +A + MK
Sbjct: 635 YNSLMHMYSRLGDCEKCENILTEIKSSRARPDRYSYNTMIYAYGRKGQMKEASRLFSEMK 694
Query: 191 ASGCTPHKLTFTILIRN-LENAGEEELVAAVRRDCIQYVEFPERFLEEVYQKH 242
SG P +T+ I +++ + N+ EE + VR + ER + Q++
Sbjct: 695 CSGLVPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTHGCKPNERTYNTILQEY 747
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 147 AEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
A ++F E++ G +PD ++ VY + D+A+ + M+ GC P +T+ LI
Sbjct: 266 AAKVFDEMRAAGFEPDKVTLNSLLDVYGKARRYDEAIGVLKEMEQGGCPPSVVTYNSLIS 325
Query: 207 NLENAG---------EEELVAAVRRDCIQYV 228
+ G EE V + D I Y
Sbjct: 326 SYVKDGLLEEATQLKEEMEVKGIEPDVITYT 356
>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
Length = 973
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A VF F+ + D+ YS +I L +N ++ A +F EL+++GL P+ Y +I
Sbjct: 575 AFSVFRFILSRRVLQ-DVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLI 633
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ G +DKA + E M G P +T+ ILI L AGE E
Sbjct: 634 SGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIE 678
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 42/82 (51%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ P+ Y+ +I K + A+ L+ E+++ + P + YT ++ Y +G + +
Sbjct: 796 FIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVS 855
Query: 184 ETYETMKASGCTPHKLTFTILI 205
+E M A G P K+T+ ++I
Sbjct: 856 ALFEEMVAKGIEPDKMTYYVMI 877
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R ++ A +F+ + +E P+ Y+ +I K + A +L E+ +G++P
Sbjct: 601 LSRNGKMHEAFGIFSEL-QEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINP 659
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
D Y +I + G I++A ++ ++ G TP+ +T+ ++
Sbjct: 660 DIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMV 703
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 54/99 (54%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
+L +++ ++ + K ++ A E+ E+ ++G++PD++ Y+ +I + + + +A E
Sbjct: 345 NLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELL 404
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCI 225
+ MK P LT++++I L G + A+ R+ +
Sbjct: 405 DEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMV 443
>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Vitis vinifera]
Length = 644
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 51/89 (57%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ +YS +I L + ++ A+E+ CE+ +G P+ Y+ +I + + G KA+
Sbjct: 379 QPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIR 438
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
++ M + C P+++ +++LI L G+
Sbjct: 439 VWKEMAKNNCVPNEICYSVLIHGLCEDGK 467
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
YS +I L K ++ A L+ ++ ++G P+ VY+ +I + G +D+A E M
Sbjct: 350 YSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMV 409
Query: 191 ASGCTPHKLTFTILIRNLENAGEEE 215
GCTP+ T++ LI+ G +
Sbjct: 410 NKGCTPNAFTYSSLIKGFFKTGNSQ 434
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ ++ +I + K + A E+F E+ + +PD Y ++ + ID+A+
Sbjct: 170 PNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLL 229
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+ M+ GC P +TF +LI L G+
Sbjct: 230 LDEMQIEGCFPSSVTFNVLINGLCKKGD 257
>gi|449436958|ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Cucumis sativus]
gi|449497032|ref|XP_004160294.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Cucumis sativus]
Length = 504
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL-KKEGLDPD 162
R +L A +V ++ P+L YS +I L +N ++ A E F E+ K+ + PD
Sbjct: 202 RNGDLQAAFEVVKEMKSARVSYPNLVTYSTLIGGLCENGKLKEAIEFFEEMVSKDNILPD 261
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
Y +I + Q G +D+A E MK++GC+P+ +++L+
Sbjct: 262 ALTYNILINGFCQRGKVDRARTILEFMKSNGCSPNVFNYSVLMN 305
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
++ ++D A + F++ P++ YS ++ K ++ A+E+F E+K G+ PDT
Sbjct: 274 QRGKVDRARTILEFMKSN-GCSPNVFNYSVLMNGYCKEGRLQEAKEVFNEIKSLGMKPDT 332
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
YT +I + G +D+A E + MK C +TF +++ L G
Sbjct: 333 ISYTTLINCLCRTGRVDEATELLQQMKDKDCRADTVTFNVMLGGLCREG 381
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
++ L A +VFN + K + KPD Y+ +I L + ++ A EL ++K + DT
Sbjct: 309 KEGRLQEAKEVFNEI-KSLGMKPDTISYTTLINCLCRTGRVDEATELLQQMKDKDCRADT 367
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ M+G + G D+A++ + + G +K ++ I++ L GE
Sbjct: 368 VTFNVMLGGLCREGRFDEALDMVQKLPFEGFYLNKGSYRIVLNFLTQKGE 417
>gi|413946224|gb|AFW78873.1| hypothetical protein ZEAMMB73_227843 [Zea mays]
Length = 778
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 8/134 (5%)
Query: 90 LLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEE 149
L LLD T + LD A K+FN + ++ D++ ++ MIL G + QI +A E
Sbjct: 558 FLANSLLDVYT---KGGMLDTASKIFNRITQK-----DVASWNTMILGYGMHGQIDVAFE 609
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209
LF +K +G++ D Y ++ V G++D+ + + M A P ++ + ++ L
Sbjct: 610 LFDLMKDDGIEYDHVSYIAVLSVCSHGGLVDRGKKYFSQMIAQNIKPQQMHYACMVDLLG 669
Query: 210 NAGEEELVAAVRRD 223
AG+ A + R+
Sbjct: 670 RAGQLSESAEIIRN 683
>gi|357460285|ref|XP_003600424.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355489472|gb|AES70675.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 393
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 66/119 (55%), Gaps = 1/119 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L + +++D A+ + ++ + +P++ Y+ ++ L KN ++ A+E++ +L +G
Sbjct: 270 LDGLCKNHQVDKAITLLTKIKNQ-GIRPNIYTYTILVDGLCKNGRLRDAQEVYQDLLNKG 328
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
D R+YT MI + G +D+A+ M+ + CTP +T+ I IR L + E++
Sbjct: 329 YQLDARIYTVMINGLCKEGFLDEALSLLSKMEDNKCTPDGVTYEITIRALFESDRNEIL 387
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 14/103 (13%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIG-----VYLQV--- 176
KPD+ +Y+ +I +L K+K ++ +L+ E+ + + PD Y +I VY+++
Sbjct: 36 KPDVVMYNTIIDILCKDKLVSDGCDLYSEMIDKKIYPDVVTYNTLIYSLLNFVYIKIRKE 95
Query: 177 ------GMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
G + +A+ M + TP+ TFT L+ L GE
Sbjct: 96 YGFSILGQMKEAVGLLNQMTSKTVTPNIRTFTTLVDGLCKDGE 138
Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ ++ K++ A++LF + G+ P+ R Y MI + M+D+A
Sbjct: 155 EPNIVTYNSLMDGYFLVKEVNKAKQLFNTISLRGMTPNVRSYKVMINGLCKNKMVDEAAN 214
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
++ M + P + + LI L
Sbjct: 215 LFKEMHSKNMVPDTVAYNSLIDGL 238
>gi|242078445|ref|XP_002443991.1| hypothetical protein SORBIDRAFT_07g005470 [Sorghum bicolor]
gi|241940341|gb|EES13486.1| hypothetical protein SORBIDRAFT_07g005470 [Sorghum bicolor]
Length = 602
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
+D A VF +R+ +PDL Y+ M+L + AE+ F +K +GL P+ VY
Sbjct: 366 VDEANTVFKAMRRHR-VEPDLCSYTTMVLAYVNASDMNGAEKFFRRIKDDGLKPNVVVYG 424
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
++ Y ++ ++K M YE M+ G P++ +T ++
Sbjct: 425 TLMKGYSKLNNVEKVMRVYERMRIQGVEPNQTIYTTIM 462
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ YS +I GK ++ A +F E+ G+ P + Y ++ + G++D+A
Sbjct: 312 KPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILLDAFAISGLVDEANT 371
Query: 185 TYETMKASGCTPHKLTFTILIRNLENA----GEEELVAAVRRDCIQ 226
++ M+ P ++T ++ NA G E+ ++ D ++
Sbjct: 372 VFKAMRRHRVEPDLCSYTTMVLAYVNASDMNGAEKFFRRIKDDGLK 417
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 63/137 (45%), Gaps = 10/137 (7%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDM-ILML----GKNKQIAMAEE 149
+L TL ++ + ++ ++ ++R + W+ +S+M LML GK + AE
Sbjct: 107 ILGTLVRFKQLKKWNIVSEILEWLRTQHWWD-----FSEMDFLMLVTAYGKLGDFSRAER 161
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209
+ + K+G P T ++ Y + KA + M+ SG P +T+ I++++L
Sbjct: 162 VLKYMNKKGYQPSVISQTGLMEAYGRGKQYRKAEAVFRRMQTSGPEPSPVTYQIILKSLV 221
Query: 210 NAGEEELVAAVRRDCIQ 226
+ + A+ D +
Sbjct: 222 EGDKYKEAEAIFEDLLN 238
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGV---YLQV 176
K +KPD ++ MI M K A A +LF ++ + + T + ++ Y +V
Sbjct: 240 KRTSFKPDQKMFHMMIYMYKKAGDYAQARKLFAQMSERKIPLSTVTFNSLMSFETDYKEV 299
Query: 177 GMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
I Y+ M+ +G P +++++LI+ A EE AV
Sbjct: 300 SSI------YDQMQRAGMKPDVVSYSLLIKAYGKARREEEALAV 337
>gi|242041019|ref|XP_002467904.1| hypothetical protein SORBIDRAFT_01g036150 [Sorghum bicolor]
gi|241921758|gb|EER94902.1| hypothetical protein SORBIDRAFT_01g036150 [Sorghum bicolor]
Length = 558
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++P ++ +S ++ L K ++ A E+F ++ G +P R Y ++G VG +++A+
Sbjct: 209 FRPSVATFSAVVGCLCKRGRVTKAMEVFDAMRALGCEPTIRSYNSLVGGLCYVGRLEEAL 268
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERF 234
+ +K S TP TFTI++ G E A+ D I P F
Sbjct: 269 DLLNKLKDSPMTPDIYTFTIVLDGFCKVGRTEEATAIFHDAIGMGLSPTIF 319
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 4/126 (3%)
Query: 90 LLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEE 149
L +D D L+ L R + A+ +F + + PD ++ + L + A+
Sbjct: 144 LTVSDYNDILSALARAGDHATAVALF----RAMPVAPDAQSFATAVQCLCRQGAPDEAKL 199
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209
E+ G P ++ ++G + G + KAME ++ M+A GC P ++ L+ L
Sbjct: 200 AIDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEVFDAMRALGCEPTIRSYNSLVGGLC 259
Query: 210 NAGEEE 215
G E
Sbjct: 260 YVGRLE 265
>gi|297839813|ref|XP_002887788.1| EMB2217 [Arabidopsis lyrata subsp. lyrata]
gi|297333629|gb|EFH64047.1| EMB2217 [Arabidopsis lyrata subsp. lyrata]
Length = 832
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 69/130 (53%), Gaps = 4/130 (3%)
Query: 81 EGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK 140
+GF R + L+D+ + +LD AL++++ ++K ++P+ LY+ +I K
Sbjct: 371 QGFGHRPSATMFVSLIDSYA---KAGKLDTALRLWDEMKKS-GFRPNFGLYTMIIESHAK 426
Query: 141 NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT 200
+ ++ +A +F +++K G P Y+ ++ ++ G +D AM+ Y +M +G P +
Sbjct: 427 SGKLEVAMSVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNAGLRPGLSS 486
Query: 201 FTILIRNLEN 210
+ L+ L N
Sbjct: 487 YISLLTLLAN 496
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
Query: 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
+ L+D++ + R LD ++KV+ + ++P +++ +I K ++ A L+
Sbjct: 348 SSLVDSMGKAGR---LDTSMKVY-MEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWD 403
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
E+KK G P+ +YT +I + + G ++ AM ++ M+ +G P T++ L+ +G
Sbjct: 404 EMKKSGFRPNFGLYTMIIESHAKSGKLEVAMSVFKDMEKAGFLPTPSTYSCLLEMHAGSG 463
Query: 213 E 213
+
Sbjct: 464 Q 464
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 38/157 (24%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPD--------------------LSLYSD 133
+++ L+ E+D AL +F + +K+ WY P SL+ +
Sbjct: 167 NMVHITQSLKIVKEVDAALSLFRWAKKQPWYLPSDECYVVLFDGLNQGRDFVGIQSLFEE 226
Query: 134 MI--------LMLGKNKQI----AMAEEL---FCELKK---EGLDPDTRVYTEMIGVYLQ 175
M+ L G Q+ A AE+L FC KK G DT+ Y ++ ++L
Sbjct: 227 MVQDSSSHGDLSFGAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLN 286
Query: 176 VGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
G+ KA E YE+M+ + T+ ++I +L +G
Sbjct: 287 KGLPYKAFEIYESMEKTDSLLDGSTYELIIPSLAKSG 323
>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial [Vitis vinifera]
gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
Length = 765
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 49/88 (55%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ + ++ + K+ +I A E F E++ +GL + YT +I + V I+KAME
Sbjct: 449 PNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMEL 508
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
++ M +GC+P + + LI L AG+
Sbjct: 509 FDEMLEAGCSPDAIVYYTLISGLSQAGK 536
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 12/142 (8%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L ++ RQ E L + +R + P+ Y+ +I K I A ELF ++
Sbjct: 386 LIDGLCKVGRQEE---GLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQM 442
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR------NL 208
K+G+ P+ ++ + G I+ A+E + M+ G + +T+T LIR N+
Sbjct: 443 NKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNI 502
Query: 209 ENAGE---EELVAAVRRDCIQY 227
E A E E L A D I Y
Sbjct: 503 EKAMELFDEMLEAGCSPDAIVY 524
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
LD A+K+F + P+ +Y+ +I L + Q+ +A L ++K +G+ P+T
Sbjct: 639 NGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTN 698
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ M + + KA E + M C P +T IL L GE
Sbjct: 699 TFNAMFKGLQEKNWLSKAFELMDRMTEHACNPDYITMEILTEWLSAVGE 747
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+N+LD A ++ + + KPD Y+ +I K + A L ++ KEGL P
Sbjct: 568 RKNKLDEAYEMLKEM-ENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTV 626
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKA-SGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
Y +I Y G +D+AM+ + M + S P+ + + ILI +L + +L ++
Sbjct: 627 VTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMD 686
Query: 223 D 223
D
Sbjct: 687 D 687
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
Query: 96 LDTLTE-LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+TL + + + ++ A++ FN ++ + K + Y+ +I I A ELF E+
Sbjct: 454 LNTLVDGMCKHGRINGAVEFFNEMQGK-GLKGNAVTYTALIRAFCNVNNIEKAMELFDEM 512
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ G PD VY +I Q G +D+A MK +G +P ++F +LI
Sbjct: 513 LEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGF 566
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
N ++ A+++F+ + E PD +Y +I L + ++ A + ++K+ G PD
Sbjct: 500 NNIEKAMELFDEML-EAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVS 558
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ +I + + +D+A E + M+ +G P +T+ LI + G+
Sbjct: 559 FNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGD 606
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 7/135 (5%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE + PD+ ++ +I + ++ A E+ E++ G+ PD Y +I + + G
Sbjct: 548 KEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDF 607
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVY 239
A + M G P +T+ LI G + + RD + P + +Y
Sbjct: 608 STAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTV--IY 665
Query: 240 QK-----HRKTQVDL 249
RK QVDL
Sbjct: 666 NILINSLCRKNQVDL 680
>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
Length = 1263
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 79/158 (50%), Gaps = 16/158 (10%)
Query: 67 VHAMKLAKSSSKLEEGFQSRICRLLKADL------LDTLTELRRQNELDLALKVFNFVRK 120
++ ++A ++ K+ FQ + + + D+ +DTL + +L+ L F +
Sbjct: 1027 LNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLC---KAGQLNDGLTYFRQLL- 1082
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E+ +PDL Y+ +I LGK+K++ A LF E++K+G+ P+ Y +I L +G
Sbjct: 1083 EMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLI---LHLGKAG 1139
Query: 181 KAMET---YETMKASGCTPHKLTFTILIRNLENAGEEE 215
KA E YE + G P+ T+ LIR +G +
Sbjct: 1140 KAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTD 1177
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ + ++ L K+ ++ MA+ +F ELK G+ PDT YT MI + D+A++
Sbjct: 563 PDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKI 622
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ M + C P L LI L AG +
Sbjct: 623 FYDMIENNCVPDVLAVNSLIDTLYKAGRGD 652
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L + +R L+ A+ +FN ++K+ P+L Y+ +IL LGK + A A +++ EL
Sbjct: 1096 LIDGLGKSKR---LEEAVSLFNEMQKK-GIVPNLYTYNSLILHLGKAGKAAEAGKMYEEL 1151
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH 197
+G P+ Y +I Y G D A Y M GC P+
Sbjct: 1152 LTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPN 1194
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + YS +++ GK + + L E++ G+ P+ YT I V Q D+A
Sbjct: 318 PSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRI 377
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
M+ GC P +T T+LI+ L +AG
Sbjct: 378 LAKMENEGCKPDVITHTVLIQVLCDAG 404
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ Y+ I +LG+ K+ A + +++ EG PD +T +I V G I A +
Sbjct: 352 KPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKD 411
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
+ MK S P ++T+ L+ + G+ + V
Sbjct: 412 VFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSV 444
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD Y ++ G N E++ +K +G + + YT +I QVG + +A+E
Sbjct: 422 KPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALE 481
Query: 185 TYETMKASGCTPHKLTFTILIRNLENA 211
++ MK G P + ++ LI A
Sbjct: 482 MFDEMKQKGIVPEQYSYNSLISGFLKA 508
Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 9/109 (8%)
Query: 121 EVW-------YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY 173
E+W Y ++ Y+ +I L + ++ A E+F E+K++G+ P+ Y +I +
Sbjct: 446 EIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGF 505
Query: 174 LQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
L+ A+E ++ M G P+ T + I +GE + A++R
Sbjct: 506 LKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGES--IKAIQR 552
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ ++ +I +L +I+ A+++F ++KK PD Y ++ + G ME
Sbjct: 387 KPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVME 446
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ MKA G + + +T +I L G
Sbjct: 447 IWNAMKADGYNDNVVAYTAVIDALCQVG 474
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+DTL + R +E A ++F + KE+ +P Y+ ++ LG+ ++ L E+
Sbjct: 641 LIDTLYKAGRGDE---AWRIF-YQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEM 696
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
P+ Y ++ + G ++ A++ +M GC P ++ +I L
Sbjct: 697 YHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGL 750
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
++D L ++ R E AL++F+ + K+ P+ Y+ +I K + A ELF +
Sbjct: 466 VIDALCQVGRVFE---ALEMFDEM-KQKGIVPEQYSYNSLISGFLKADRFGDALELFKHM 521
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
G P+ + I Y + G KA++ YE MK+ G P + ++ L +G
Sbjct: 522 DIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSG 579
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ P Y ++ L K +I AE LF E+ + G + +Y ++ + G +K
Sbjct: 981 FSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVC 1040
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGE 213
++ M G P ++TI+I L AG+
Sbjct: 1041 HLFQDMVDQGINPDIKSYTIIIDTLCKAGQ 1070
Score = 36.6 bits (83), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
Query: 91 LKADLLDTLT-ELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEE 149
LK L ++L L +N +D+A +F + KE+ PD Y+ ++ +GK+ +I +
Sbjct: 878 LKTGLYNSLICGLVDENLIDIAEGLFAEM-KELGCGPDEFTYNLLLDAMGKSMRIEEMLK 936
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209
+ E+ ++G + Y +I ++ +++A++ Y + + G +P T+ L+ L
Sbjct: 937 VQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLL 996
Query: 210 NAGEEELVAAVRRDCIQY 227
AG E + + ++Y
Sbjct: 997 KAGRIEDAENLFNEMLEY 1014
Score = 36.6 bits (83), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 61/154 (39%), Gaps = 11/154 (7%)
Query: 60 SSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVR 119
S E+I+A+ +L KS + + L L + L +A +VF+ +
Sbjct: 543 SGESIKAIQRYELMKSKGIVPDVVAGNA----------VLFGLAKSGRLGMAKRVFHEL- 591
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K + PD Y+ MI K + A ++F ++ + PD +I + G
Sbjct: 592 KAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRG 651
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
D+A + +K P T+ L+ L G+
Sbjct: 652 DEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGK 685
>gi|79568177|ref|NP_181166.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206301|sp|Q9SJN2.1|PP187_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g36240
gi|4510352|gb|AAD21441.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330254126|gb|AEC09220.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 497
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 58/112 (51%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R ++D AL F+ +++ + KP++ +Y+ ++ K+ + A + + KE PD
Sbjct: 169 RARKMDYALLAFDTMKRLIDGKPNVGVYNTVVNGYVKSGDMDKALRFYQRMGKERAKPDV 228
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ +I Y + D A++ + MK GC P+ ++F LIR ++G+ E
Sbjct: 229 CTFNILINGYCRSSKFDLALDLFREMKEKGCEPNVVSFNTLIRGFLSSGKIE 280
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 84/202 (41%), Gaps = 25/202 (12%)
Query: 57 RVLSSEAIQAVHAMKLAKSSSKLEEGFQSRI---CRLLKADL----LDTLTEL------- 102
R+LS A S +LE F+S I CR K D DT+ L
Sbjct: 134 RLLSFVAANPCPCSSGIFSCPELEPIFRSAIDAYCRARKMDYALLAFDTMKRLIDGKPNV 193
Query: 103 ----------RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
+ ++D AL+ + + KE KPD+ ++ +I ++ + +A +LF
Sbjct: 194 GVYNTVVNGYVKSGDMDKALRFYQRMGKER-AKPDVCTFNILINGYCRSSKFDLALDLFR 252
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
E+K++G +P+ + +I +L G I++ ++ M GC + T IL+ L G
Sbjct: 253 EMKEKGCEPNVVSFNTLIRGFLSSGKIEEGVKMAYEMIELGCRFSEATCEILVDGLCREG 312
Query: 213 EEELVAAVRRDCIQYVEFPERF 234
+ + D + P F
Sbjct: 313 RVDDACGLVLDLLNKRVLPSEF 334
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 11/142 (7%)
Query: 75 SSSKLEEGFQSRI------CRLLKADLLDTLTELRRQNELDLALK-VFNFVRKEVWYKPD 127
SS K+EEG + CR +A + L R+ +D A V + + K V P
Sbjct: 275 SSGKIEEGVKMAYEMIELGCRFSEATCEILVDGLCREGRVDDACGLVLDLLNKRVL--PS 332
Query: 128 LSLYSDMILML-GKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
Y ++ L G+NK + A E+ EL K+G P T ++ + G +KA
Sbjct: 333 EFDYGSLVEKLCGENKAVR-AMEMMEELWKKGQTPCFIACTTLVEGLRKSGRTEKASGFM 391
Query: 187 ETMKASGCTPHKLTFTILIRNL 208
E M +G P +TF +L+R+L
Sbjct: 392 EKMMNAGILPDSVTFNLLLRDL 413
>gi|125549696|gb|EAY95518.1| hypothetical protein OsI_17364 [Oryza sativa Indica Group]
Length = 847
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R +LD ++++ +R+ +P LY+ ++ ++ ++ +A +LF +++K G P
Sbjct: 391 LVRAGKLDAGMELWEEMRRG-GLRPSFGLYTMVVEANARSGRLDVATQLFGDMEKSGFFP 449
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
Y ++ ++ G +D AM Y +M +G P TFT L+ L N +L A V
Sbjct: 450 TPATYACLVEMHASAGQVDAAMRLYHSMANAGQRPGLSTFTALLMMLANKRMLDLAAKV 508
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R LD+A ++F + K ++ P + Y+ ++ M Q+ A L+ + G P
Sbjct: 428 RSGRLDVATQLFGDMEKSGFF-PTPATYACLVEMHASAGQVDAAMRLYHSMANAGQRPGL 486
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
+T ++ + M+D A + MKASG P ++T + L+ G EL
Sbjct: 487 STFTALLMMLANKRMLDLAAKVLLEMKASGF-PIEVTASDLLMIYIKEGSTEL 538
>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Glycine max]
Length = 892
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Query: 101 ELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD 160
E+ ++ + D A ++ N + Y+P++ Y+ I ++ AEE+ ++K EG+
Sbjct: 579 EVLKEYDFDRANEILNRLISS-GYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVL 637
Query: 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
D+ +Y +I Y +G++D A M +GC P LT++IL+++L
Sbjct: 638 LDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYSILMKHL 685
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL Y+ ++L +N + A +FC + + + YT +I + G + +A+E
Sbjct: 222 PDLFTYTSLVLGYCRNDDVERACGVFCVMPRR----NAVSYTNLIHGLCEAGKLHEALEF 277
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEE 214
+ M+ GC P T+T+L+ L +G E
Sbjct: 278 WARMREDGCFPTVRTYTVLVCALCESGRE 306
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
+D A ++F + ++ + PD ++ ++ L + ++ A ++ LK++ + + YT
Sbjct: 446 VDSASRLFRLMIRD-GFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYT 504
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+I Y + G I+ A ++ M A C P+ +TF ++I L G+
Sbjct: 505 ALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGK 550
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+++I L + ++ A E + ++++G P R YT ++ + G +A+ + M+
Sbjct: 258 YTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMR 317
Query: 191 ASGCTPHKLTFTILIRNLENAG 212
GC P+ T+T+LI L G
Sbjct: 318 ERGCEPNVYTYTVLIDYLCKEG 339
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+++I + K + A L ++ + L PD Y +I +VG++D A
Sbjct: 393 PNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRL 452
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ M G +P + TF + L G
Sbjct: 453 FRLMIRDGFSPDQWTFNAFMVCLCRMG 479
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
+L+ L E + +E AL+ + +R++ + P + Y+ ++ L ++ + A LF
Sbjct: 259 TNLIHGLCEAGKLHE---ALEFWARMREDGCF-PTVRTYTVLVCALCESGRELEALSLFG 314
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
E+++ G +P+ YT +I + G +D+A++ M G P + F LI
Sbjct: 315 EMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALI 367
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL +F +R E +P++ Y+ +I L K ++ A ++ E+ ++G+ P + +I
Sbjct: 309 ALSLFGEMR-ERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALI 367
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
G Y + GM++ A+ M++ P+ T+ LI
Sbjct: 368 GSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELI 402
>gi|297841875|ref|XP_002888819.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334660|gb|EFH65078.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 512
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 14/147 (9%)
Query: 62 EAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKE 121
EAI A H M+ + GF+ + +LD L++ R + A KVF+ ++K+
Sbjct: 182 EAITAFHKME--------DYGFKMESSDFNR--MLDILSKSRNVGD---AQKVFDKMKKK 228
Query: 122 VWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDK 181
++PD+ Y+ ++ G+ + E++ E+K EG +PD Y +I Y + D+
Sbjct: 229 R-FEPDIKSYTILLEGWGQELNLLRVNEVYGEMKDEGFEPDVVAYGIIINAYCKAKKYDE 287
Query: 182 AMETYETMKASGCTPHKLTFTILIRNL 208
A+ + M+ C P F LI L
Sbjct: 288 AVRFFNEMEQRNCKPSPHIFCSLINGL 314
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
D A++ FN + + KP ++ +I LG K++ A E F K G + Y
Sbjct: 286 DEAVRFFNEMEQRNC-KPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNA 344
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
++G Y ++ A +T + M++ G P+ T+ I++ +L
Sbjct: 345 LVGAYCWSQRMEDAFKTVDEMRSKGIGPNARTYDIILHHL 384
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P +S Y M+ M +++ MA +++ E+K +G+ P +++ +I +D+A E
Sbjct: 404 PTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEY 463
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVA--AVRRD 223
+ M G P F+ L + L + G ++ VA AV+ D
Sbjct: 464 FNEMLDVGIRPPGHLFSRLKQTLLDEGRKDKVADLAVKMD 503
>gi|242095134|ref|XP_002438057.1| hypothetical protein SORBIDRAFT_10g007440 [Sorghum bicolor]
gi|241916280|gb|EER89424.1| hypothetical protein SORBIDRAFT_10g007440 [Sorghum bicolor]
Length = 499
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R ++D A +F F++K +P+ Y+ +I K I A +F E++ G++PD
Sbjct: 271 RLGQVDKARAIFGFMKKNDC-EPNAFNYATLINGHCKKADIEAARSVFEEMRNAGVEPDA 329
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
YT +IG + G +D+A+ MK GC +T+ ++I L G
Sbjct: 330 VSYTALIGCLCRHGSVDEAINLVLEMKQKGCRADVVTYNLVIEGLCRDG 378
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD LY+ +I + Q+ A +F +KK +P+ Y +I + + I+ A
Sbjct: 257 PDQLLYNVIIDGFCRLGQVDKARAIFGFMKKNDCEPNAFNYATLINGHCKKADIEAARSV 316
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+E M+ +G P +++T LI L G
Sbjct: 317 FEEMRNAGVEPDAVSYTALIGCLCRHG 343
>gi|449463418|ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Cucumis sativus]
gi|449499065|ref|XP_004160711.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Cucumis sativus]
Length = 439
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R +++ A+ FN + K KP+++ ++ ++ L K+K + A+E+F +K + + PD+
Sbjct: 102 RAQKVEEAVYTFNVMEK-YNMKPNVAAFNGLLSALCKSKNVRKAQEIFDNMKDQFV-PDS 159
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ Y+ +I + + + KA E Y M SGC P ++T++I++ L AG
Sbjct: 160 KTYSILIEGWGRAPNLPKAREIYREMIDSGCIPDEVTYSIMVDVLCKAG 208
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L+ L + + A ++F+ ++ + + PD YS +I G+ + A E++ E+ G
Sbjct: 132 LSALCKSKNVRKAQEIFDNMKDQ--FVPDSKTYSILIEGWGRAPNLPKAREIYREMIDSG 189
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
PD Y+ M+ V + G +D+A+E + M + C P +++L+
Sbjct: 190 CIPDEVTYSIMVDVLCKAGRVDEAVEIVKEMDYNNCKPSSFIYSVLV 236
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 44/105 (41%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP +YS ++ G +I A F E+++ G+ D Y +I + + +
Sbjct: 226 KPSSFIYSVLVHTYGVENRIEDAVSTFLEMERNGVMADVAAYNALISAFCKANKMKNVYR 285
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVE 229
+ M G P+ T I+I +L GE + + R I+ E
Sbjct: 286 VLKDMDLKGVNPNSRTCNIIINSLIGRGETDEAFKIFRRMIKVCE 330
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 17/146 (11%)
Query: 84 QSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ 143
SR C ++ + L + E D A K+F + K +PD+ Y+ +I M K+
Sbjct: 298 NSRTCNII-------INSLIGRGETDEAFKIFRRMIKVC--EPDVDSYTMIIKMFCGRKE 348
Query: 144 IAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTI 203
+ MA +++ +KK+ P ++ +I Q+G +A E M G P TF
Sbjct: 349 LDMALKIWKYMKKKQFVPSMHTFSVLINGLCQIGNATQACVLLEEMIEKGIRPSGATFGR 408
Query: 204 LIRNLENAGEEELVAAVRRDCIQYVE 229
L R+L L+ R+D +++++
Sbjct: 409 L-RHL-------LIKEGRKDVLKFLQ 426
>gi|356573733|ref|XP_003555011.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
mitochondrial-like [Glycine max]
Length = 752
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 68/125 (54%), Gaps = 1/125 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L + LD A K+F ++ ++P L++++ ++ +GK ++ A +++ E++ G
Sbjct: 236 IPNLAKSGRLDAAFKLFQEMKVR-GFRPGLNVFASLVDSMGKAGRLDSAMKVYMEMRGYG 294
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
P +Y +I Y++ G ++ A+ ++ M+ +G P+ +T++I + +G+ E+
Sbjct: 295 YKPPPTIYVSLIESYVKSGKLETALRLWDEMRMAGFRPNFGLYTLIIESHAKSGKLEIAM 354
Query: 219 AVRRD 223
+ D
Sbjct: 355 STFLD 359
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 59/107 (55%), Gaps = 1/107 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ +L+ AL++++ +R ++P+ LY+ +I K+ ++ +A F +++K G P
Sbjct: 311 KSGKLETALRLWDEMRM-AGFRPNFGLYTLIIESHAKSGKLEIAMSTFLDMEKAGFLPTP 369
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210
Y ++ ++ G ID AM+ Y +M +G P T+T+L+ L N
Sbjct: 370 STYACLLEMHAASGQIDPAMKLYNSMTNAGLRPGLSTYTVLLTLLAN 416
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 41/150 (27%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ------------------ 143
L+ ++D L +F + +++ WY P Y ++L G N++
Sbjct: 96 LKVVGDVDACLSLFRWAKRQAWYVPSDDCY--VMLFDGLNQKRDFEGIQLLFDEMVGDSA 153
Query: 144 ---------------IAMAEEL---FCELKK---EGLDPDTRVYTEMIGVYLQVGMIDKA 182
+A AE+L FC KK G DT Y +I ++L G+ KA
Sbjct: 154 DGVSLFAACNRVIRYLAKAEKLEVSFCCFKKILNAGCKVDTETYNSLITLFLNKGLPYKA 213
Query: 183 METYETMKASGCTPHKLTFTILIRNLENAG 212
E YE+M+ +GC+ T+ ++I NL +G
Sbjct: 214 FEMYESMEKAGCSLDGSTYELMIPNLAKSG 243
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D S Y MI L K+ ++ A +LF E+K G P V+ ++ + G +D AM+ Y
Sbjct: 228 DGSTYELMIPNLAKSGRLDAAFKLFQEMKVRGFRPGLNVFASLVDSMGKAGRLDSAMKVY 287
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEE 215
M+ G P + LI + +G+ E
Sbjct: 288 MEMRGYGYKPPPTIYVSLIESYVKSGKLE 316
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
++D A+K++N + +P LS Y+ ++ +L K + +A ++ E+K G D
Sbjct: 382 SGQIDPAMKLYNSM-TNAGLRPGLSTYTVLLTLLANKKLVDVAAKILLEMKAMGYSVDVT 440
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
++++ VY++ G +D A+ M +SG T +IR L
Sbjct: 441 A-SDILMVYIKEGSVDLALRWLRFMGSSGIR----TNNFIIRQL 479
>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
Length = 413
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LL+ L +LRR +E A +F+ ++ PDL+ + +I L K ++ A E L
Sbjct: 228 LLNGLKKLRRTDE---ACDLFDEMQANKCM-PDLTTFGTLIDTLAKAGRMEDALEQSARL 283
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
K G P++ +Y +I + + G +DK E ++ M C P +T+TIL+ G
Sbjct: 284 VKMGHVPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHT 343
Query: 215 EL 216
+
Sbjct: 344 SM 345
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ YS ++ LGK + A A E+F ++K G PDT VY +I + G +D+A+E
Sbjct: 116 DVFTYSYLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELL 175
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEE 215
E M G P T+ I+I L + G E
Sbjct: 176 EDMNRKGIMPDCRTYNIVIDVLSSCGRYE 204
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 4/115 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L + R + AL+VF+ ++K PD +Y+ +I LGK ++ A EL ++
Sbjct: 123 LMDALGKAGRAAK---ALEVFSNMQK-AGCMPDTVVYNVLISCLGKQGKVDEALELLEDM 178
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209
++G+ PD R Y +I V G +KA + MK +P +T+ L+ L+
Sbjct: 179 NRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLK 233
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ ++L + +MA EL E+ +EG P Y +I G ++ A
Sbjct: 325 PDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTL 384
Query: 186 YETMKASGCTPHKLTFTIL 204
++ M A G P T++ L
Sbjct: 385 FKEMIAKGFNPDMQTYSAL 403
>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
Length = 649
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R ++D A+ + + + + KP + ++ ++ L K+++ A+E+F + + + PD
Sbjct: 204 RAGDVDAAIALVDSMANK-GLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDV 262
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
R + +IG + +VG +++AM+ Y+ M+ G TP ++F+ LI G+ + AA R+
Sbjct: 263 RSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLRE 322
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R E++ A+K + +++ PD+ +S +I + ++ A E+K GL PD
Sbjct: 274 RVGEVEEAMKFYKEMQQR-GVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDG 332
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+YT +IG + + G + +A+ + M GC P +T+ L+ L
Sbjct: 333 VIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGL 377
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ ++ L K ++ AEEL E+K+ G+ PD +T +I Y + G +KA++
Sbjct: 365 PDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQL 424
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
++T+ P + + LI + G+
Sbjct: 425 FDTLLHQRLRPDVVAYNSLIDGMCRKGD 452
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL ++ +I K + + A +F ++KE + PD Y +I + + G +++A
Sbjct: 540 PDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRV 599
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ M ASG P + T+ LI AG +
Sbjct: 600 FKKMGASGIEPDRYTYMSLINGHVTAGNSK 629
Score = 43.5 bits (101), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 66/151 (43%), Gaps = 6/151 (3%)
Query: 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
L L + D A +VF + + PD+ ++ +I + ++ A + + E+++
Sbjct: 233 VLKGLCKHRRFDKAKEVFRAM-DQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQR 291
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
G+ PD ++ +IG++ G +D A MK G P + +T++I AG
Sbjct: 292 GVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEA 351
Query: 218 AAVRRD-----CIQYVEFPERFLEEVYQKHR 243
VR + C+ V L + ++HR
Sbjct: 352 LRVRDEMVGLGCLPDVVTYNTLLNGLCKQHR 382
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE PDL ++ +I ++ A +LF L + L PD Y +I + G +
Sbjct: 394 KERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDL 453
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
KA E ++ M A P+ +T++ILI + G+ E
Sbjct: 454 AKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVE 489
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
++ + A VFN + KE+ +PD Y+ +I + + A +F ++ G++PD
Sbjct: 554 KEENMHGAFNVFNIMEKEM-VQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDR 612
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTP 196
Y +I ++ G +A + ++ M G P
Sbjct: 613 YTYMSLINGHVTAGNSKEAFQLHDEMMHRGFAP 645
>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
gi|224030695|gb|ACN34423.1| unknown [Zea mays]
gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
Length = 756
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 102 LRRQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD 160
L + ELD A + N V + PD + ++ +I+ L ++ A +L EL +GL
Sbjct: 345 LSKNGELDEAKGIVNQMVDRGCL--PDTTTFNTLIVALCSQNRLEEALDLARELTVKGLS 402
Query: 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
PD + +I +VG + +E MK+SGC P ++T+ ILI +L + G+
Sbjct: 403 PDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGK 455
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 115 FNFVRKEV--WYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGV 172
+++KE+ ++PD Y+ + L +N ++ A ++ + +EG DPD Y +I
Sbjct: 285 LGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINC 344
Query: 173 YLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL--ENAGEEEL 216
+ G +D+A M GC P TF LI L +N EE L
Sbjct: 345 LSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEAL 390
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
ALKV + + +E + PD+ Y+ +I L KN ++ A+ + ++ G PDT + +I
Sbjct: 319 ALKVMDLMLQE-GHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLI 377
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
+++A++ + G +P TF ILI L G+ L
Sbjct: 378 VALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHL 423
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
++ +I L K K+I A EL ++ KEGL P Y ++ Y + G + KA + ETM
Sbjct: 513 FNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMT 572
Query: 191 ASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
A+G +T+ LI L AG ++ + R
Sbjct: 573 ANGFEIDVVTYGTLINGLCKAGRTQVALKLLR 604
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 71/165 (43%), Gaps = 13/165 (7%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LL+ L E R L+ V+N + + +PD+ + +I L + Q+ A + E+
Sbjct: 166 LLNVLAEGSRMKLLE---SVYNEM-TDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEM 221
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG-- 212
+ PD +T ++ +++ G I+ A+ M +GC+P ++T +LI G
Sbjct: 222 SSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRV 281
Query: 213 -------EEELVAAVRRDCIQYVEFPERFLEEVYQKHRKTQVDLV 250
++E+ D + Y F + + H +DL+
Sbjct: 282 EDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLM 326
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 7/113 (6%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYK---PDLSLYSDMILMLGKNKQIAMAEELFCELK 155
+ L QN L+ AL + +E+ K PD+ ++ +I L K + LF E+K
Sbjct: 377 IVALCSQNRLEEALDL----ARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMK 432
Query: 156 KEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
G PD Y +I +G + A++ + M+++GC +T+ +I L
Sbjct: 433 SSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDAL 485
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+ D ++Y+ ++ +L + ++ + E ++ E+ G+ PD +I + + A+
Sbjct: 157 QADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVL 216
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
E M + P + TFT L++ G E AA+R
Sbjct: 217 MLEEMSSHAVAPDETTFTTLMQGFIEEGSIE--AALR 251
>gi|225427506|ref|XP_002263778.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g31840-like [Vitis vinifera]
Length = 1131
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
L++F ++ + PD+ +Y+ +I M + + EL E+ K GL+PD Y MI
Sbjct: 574 GLQIFKLMQSNGIF-PDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMI 632
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y + + KA++ +E +K P+ +TFTILI
Sbjct: 633 CGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTILI 667
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
LD A ++N + E PDL +YS +I L + ++ LF G+ D +++
Sbjct: 291 LDEAFSLYNLM-IEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFS 349
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
++ Y++VG + KA+E Y M G +P+ +T++ILI L G
Sbjct: 350 SIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNG 394
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 7/143 (4%)
Query: 76 SSKLEEG---FQSRICRLLKADLL---DTLTELRRQNELDLALKVFNFVRKEVWYKPDLS 129
+ KLEEG F + R +K D++ + R +L A++V+ + KE P++
Sbjct: 323 AGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKE-GISPNVV 381
Query: 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM 189
YS +I L +N ++ A +F ++ K+GL+P Y+ +I + + + Y M
Sbjct: 382 TYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIM 441
Query: 190 KASGCTPHKLTFTILIRNLENAG 212
G P + ++LI L G
Sbjct: 442 LRKGHVPDVVVCSMLINGLSRQG 464
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 141 NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT 200
QI +A + F + + G P+ ++ +I VY + +D+A Y M G P +
Sbjct: 253 GNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVI 312
Query: 201 FTILIRNLENAGEEE 215
++ILI L AG+ E
Sbjct: 313 YSILINGLFRAGKLE 327
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L Q LD AL +F F + + PD +Y +I K + A ++F ++ G+ P
Sbjct: 530 LAEQGRLDEALALF-FQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFP 588
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
D +Y +I ++ + G ++ +E + G P +T+ +I
Sbjct: 589 DICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMI 632
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 50/102 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ ++ L + ++ A LF +L K+G PD +Y +I + + ++
Sbjct: 518 PDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQI 577
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227
++ M+++G P + +LI G E V + R+ I+Y
Sbjct: 578 FKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKY 619
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 113 KVFNFVRKEVWY--KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
V +R+ + Y +PD+ Y+ MI K + A +LF LK P+ +T +I
Sbjct: 608 NVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTILI 667
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y + G +D AM + +M G P+ LT++ LI
Sbjct: 668 DAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLI 702
>gi|224068256|ref|XP_002302689.1| predicted protein [Populus trichocarpa]
gi|222844415|gb|EEE81962.1| predicted protein [Populus trichocarpa]
Length = 640
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + DLA V + + K+ Y D+ +Y+ +I LGK +I A LF ++K GL+P
Sbjct: 514 LGKMGRADLASSVLDKLMKQGGYL-DIVMYNTLIDALGKAGRIDEANNLFEQMKISGLNP 572
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTIL 204
D Y MI V+ + G + A + + M +GC P+ +T T L
Sbjct: 573 DVVTYNIMIEVHSKTGRLKDAYKFLKMMLDAGCLPNHVTDTTL 615
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ ++ + A VFN + ++V PD++ Y+ +I LGK + +A + +L K+G
Sbjct: 476 MSSFVKKGYFNRAWDVFNEMGEKVC-PPDIATYNLVIQGLGKMGRADLASSVLDKLMKQG 534
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
D +Y +I + G ID+A +E MK SG P +T+ I+I
Sbjct: 535 GYLDIVMYNTLIDALGKAGRIDEANNLFEQMKISGLNPDVVTYNIMI 581
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 7/118 (5%)
Query: 109 DLALKVFNFVRKE-VWYKPDLSLYSDMI-----LMLGKNKQIAMAEELFCELKKEGLDPD 162
DL+ ++F+ R + V K S DM+ + L K K +++A +LF G+DP
Sbjct: 410 DLSSQLFSLARGQRVQAKGAGSFDIDMVNTFLSIFLAKGK-LSLACKLFEIFTDMGVDPV 468
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+ Y ++ +++ G ++A + + M C P T+ ++I+ L G +L ++V
Sbjct: 469 SYTYNSIMSSFVKKGYFNRAWDVFNEMGEKVCPPDIATYNLVIQGLGKMGRADLASSV 526
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 104 RQNELDLALK-VFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGL--- 159
R E+ + K VF +R + ++ + Y+ I G + + LF E+K++ L
Sbjct: 55 RNGEMKVEFKTVFAKLRGKGGFELNTWGYNICIHAFGCWGDLTTSLRLFKEMKEKSLASG 114
Query: 160 --DPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN 207
DPD Y +I V G + A+ YE +K SG P T+ ILI+
Sbjct: 115 SLDPDLCTYNSLIHVLCLAGKVKDAVIVYEELKVSGHEPDAFTYRILIQG 164
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++PD Y +I K+ Q+ A ++F E++ G PDT VY ++ + + +A
Sbjct: 151 HEPDAFTYRILIQGCCKSYQMEDATKIFSEMQYNGFLPDTVVYNSLLDGMFKARKVMEAC 210
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ +E M G T+ ILI L G E
Sbjct: 211 QLFEKMVQDGVRASCWTYNILIDGLCKNGRAE 242
>gi|357134934|ref|XP_003569069.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Brachypodium distachyon]
Length = 642
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
+L AL VF+ + K PD+ YS +I K + +A ++ ++ G P+ V
Sbjct: 346 GDLKRALFVFSCMGKSDCL-PDVRTYSTLIDGFSKAGDLDVAMSIWNDMTNAGCKPNVVV 404
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
YT M+ V + M D+A + M C P+ LTF LIR+L + G
Sbjct: 405 YTNMVDVLCKKVMFDQAENLIDKMSLENCPPNTLTFNTLIRSLCDLG 451
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ +LD+A+ ++N + KP++ +Y++M+ +L K AE L ++ E P+T
Sbjct: 379 KAGDLDVAMSIWNDM-TNAGCKPNVVVYTNMVDVLCKKVMFDQAENLIDKMSLENCPPNT 437
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ +I +G +A+ + M+ GC P+ T+ L+ L G E
Sbjct: 438 LTFNTLIRSLCDLGRAGRALNVFHGMRRYGCPPNDRTYNELLHGLFREGNCE 489
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL ++N++ E W +S Y+ +I L + A +F + K PD R Y+ +I
Sbjct: 316 ALGMWNWMVAEGWAPSTIS-YNVLIRGLCHIGDLKRALFVFSCMGKSDCLPDVRTYSTLI 374
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ + G +D AM + M +GC P+ + +T ++
Sbjct: 375 DGFSKAGDLDVAMSIWNDMTNAGCKPNVVVYTNMV 409
Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
E+ GL PDT YT ++G + + + A M GC P+ TFT+L++ + G
Sbjct: 252 EMVHRGLRPDTVAYTSIVGAFCKARELRMACAILARMVTEGCVPNVQTFTVLVKGFFDDG 311
Query: 213 E 213
+
Sbjct: 312 K 312
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 62/140 (44%), Gaps = 5/140 (3%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L R+N + + V++ +RK +P++ Y+ +I L +N ++ A + E+ ++G
Sbjct: 134 LDALLRENLVAAVVPVYDNMRK-AGVEPNVYTYNLLIKALCQNDRVGAARRMLDEMARKG 192
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCT----PHKLTFTILIRNLENAGEE 214
PD +T +I ++ +D+A M G + H L +R + +E
Sbjct: 193 CRPDEVSHTTIISALCKLDRLDEARGILAEMTPVGASYNAVVHALCGQFRMREVFLVVDE 252
Query: 215 ELVAAVRRDCIQYVEFPERF 234
+ +R D + Y F
Sbjct: 253 MVHRGLRPDTVAYTSIVGAF 272
>gi|302782183|ref|XP_002972865.1| hypothetical protein SELMODRAFT_51647 [Selaginella moellendorffii]
gi|300159466|gb|EFJ26086.1| hypothetical protein SELMODRAFT_51647 [Selaginella moellendorffii]
Length = 597
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 14/121 (11%)
Query: 85 SRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQI 144
+RI L + L L E R+ +EL + + + + D ++ + ++ M GK++ +
Sbjct: 81 TRITFLHALEKLKNLAEGRKIHELAITVGL----------ESDPAVGTAIVTMYGKSRSL 130
Query: 145 AMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTIL 204
A A+ +F +LK+ D +T +I Y Q G ++A++ Y +M G P++ TFTI+
Sbjct: 131 ADAKRVFDQLKRR----DVVAWTALITAYTQNGHCEEALDLYSSMDPDGVAPNQYTFTIV 186
Query: 205 I 205
I
Sbjct: 187 I 187
>gi|110742004|dbj|BAE98941.1| putative salt-inducible protein [Arabidopsis thaliana]
Length = 497
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 58/112 (51%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R ++D AL F+ +++ + KP++ +Y+ ++ K+ + A + + KE PD
Sbjct: 169 RARKMDYALLAFDTMKRLIDGKPNVGVYNTVVNGYVKSGDMDKALRFYQRMGKERAKPDV 228
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ +I Y + D A++ + MK GC P+ ++F LIR ++G+ E
Sbjct: 229 CTFNILINGYCRSSKFDLALDLFREMKEKGCEPNVVSFNTLIRGFLSSGKIE 280
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 84/202 (41%), Gaps = 25/202 (12%)
Query: 57 RVLSSEAIQAVHAMKLAKSSSKLEEGFQSRI---CRLLKADL----LDTLTEL------- 102
R+LS A S +LE F+S I CR K D DT+ L
Sbjct: 134 RLLSFVAANPCPCSSGIFSCPELEPIFRSAIDAYCRARKMDYALLAFDTMKRLIDGKPNV 193
Query: 103 ----------RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
+ ++D AL+ + + KE KPD+ ++ +I ++ + +A +LF
Sbjct: 194 GVYNTVVNGYVKSGDMDKALRFYQRMGKER-AKPDVCTFNILINGYCRSSKFDLALDLFR 252
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
E+K++G +P+ + +I +L G I++ ++ M GC + T IL+ L G
Sbjct: 253 EMKEKGCEPNVVSFNTLIRGFLSSGKIEEGVKMAYEMIELGCRFSEATCEILVDGLCREG 312
Query: 213 EEELVAAVRRDCIQYVEFPERF 234
+ + D + P F
Sbjct: 313 RVDDACGLVLDLLNKRVLPSEF 334
>gi|342319080|gb|EGU11031.1| Microtubule-associated protein, putative [Rhodotorula glutinis ATCC
204091]
Length = 1171
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 139 GKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK 198
GK +A L ++ + GL+PD +T ++ L VG D T E M+A+G P +
Sbjct: 914 GKRPDLATMIRLLQQIAERGLEPDVYTFTMVLHALLAVGQKDATTRTIEMMQAAGIKPTR 973
Query: 199 LTFTILIRNLENAGEEELVAAV 220
T+ +I NL ++GE E ++A
Sbjct: 974 ATYGAVIHNLSSSGEPEKLSAA 995
>gi|297834130|ref|XP_002884947.1| hypothetical protein ARALYDRAFT_897532 [Arabidopsis lyrata subsp.
lyrata]
gi|297330787|gb|EFH61206.1| hypothetical protein ARALYDRAFT_897532 [Arabidopsis lyrata subsp.
lyrata]
Length = 528
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 70/160 (43%), Gaps = 19/160 (11%)
Query: 87 ICRLLKADLLDTLTELRRQNELDLALKVFN-----FVRKE-------VW-------YKPD 127
+CR D + ++ E +N + L FN F R+E +W P+
Sbjct: 206 LCRTGSMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLAPN 265
Query: 128 LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYE 187
+ Y+ + L +NK+ A +L +K EG+ PD Y I Y +++ M+ Y
Sbjct: 266 IRSYNSRVRGLTRNKKFTDAIDLINVMKTEGISPDVHTYNAFITAYRGDNNLEEVMKWYN 325
Query: 188 TMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227
MK G TP +T+ +LI L G+ + + + I++
Sbjct: 326 EMKEKGLTPDTVTYCLLIPLLCKKGDLDRAVEISEEAIKH 365
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 49/102 (48%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
+LD A K F + +++ PDL Y+ MI L + + +F EL+K G +PD +
Sbjct: 175 KLDEAKKAFKELPEKLGITPDLVTYNTMIKALCRTGSMDDILSIFEELEKNGFEPDLISF 234
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
++ + + + + ++ MK+ P+ ++ +R L
Sbjct: 235 NTLLEEFYRRELFVEGDRIWDLMKSKNLAPNIRSYNSRVRGL 276
>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
gi|194700420|gb|ACF84294.1| unknown [Zea mays]
gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
Length = 598
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
Q +D AL++ + + + KPD+ Y+ ++ L + AEEL ++ + PD
Sbjct: 351 QGNVDSALELLSNM-QSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNS 409
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ +I + Q G+I +A E ++ M GC P+ T++ +I L AG+ E
Sbjct: 410 TFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKME 460
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 41/83 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ ++ K + A EL ++ EG +P+ Y +I + G +D+A E
Sbjct: 196 PDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYNVIIDAMCREGDVDQAREL 255
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
++ + GC P+ + + +++
Sbjct: 256 LNSLPSRGCKPNTVNYNTVLKGF 278
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL++ +F+R E +P+ Y+ +I + + + A EL L G P+T Y ++
Sbjct: 217 ALELIDFMRAE-GCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVL 275
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ + A E + M C P++ T ++I L G
Sbjct: 276 KGFCSIERWVDADEILDEMVRENCPPNEATLNVIINTLCRKG 317
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD S ++ +I + I A E+F ++ ++G +P++ Y+ +IG + G +++A+E
Sbjct: 406 PDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALEL 465
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE-EELVAAVRR 222
M G K+ + +L +L + EE+V V +
Sbjct: 466 LNEMANKGFNTDKM-YRVLTESLNKEDKIEEVVQVVHK 502
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%)
Query: 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM 189
+Y + L K +I ++ +L+ G+ P T +Y ++ + G D A++ M
Sbjct: 479 MYRVLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLLGLCRNGKTDYAIDVLADM 538
Query: 190 KASGCTPHKLTFTILIRNL 208
+ GC P + T+ ILI L
Sbjct: 539 VSCGCMPDESTYIILIEGL 557
>gi|255660834|gb|ACU25586.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
Length = 418
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
RQ +LD ++ + + +PD+ YS +I L K ++ A ELF E+ +GL P+
Sbjct: 183 RQGDLDKGFRLKSAMHAS-GVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNG 241
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+T +I + + G +D AME Y+ M + +P +T+ LI L G+
Sbjct: 242 VTFTTLIDGHCKNGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 291
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 114 VFNFVRK--EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIG 171
V+ F ++ E Y L ++ ++ K +I +++ +F ++K GL P + ++
Sbjct: 120 VWGFYKEILECGYPASLYFFNILMHRFCKEGEIRLSQSVFDAIRKWGLRPSVVSFNTLMN 179
Query: 172 VYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
Y++ G +DK M ASG P T+++LI L
Sbjct: 180 GYIRQGDLDKGFRLKSAMHASGVQPDVYTYSVLINGL 216
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ ++DLA++++ + + PDL Y+ +I L K + A L E+ +GL PD
Sbjct: 253 KNGKVDLAMEIYKQMLSQSL-SPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDK 311
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
YT +I + G ++ A E + M + +T LI L G
Sbjct: 312 ITYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGLCQEG 360
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
Query: 104 RQNELDLALKVFNFVRKEVW-YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
++ E+ L+ VF+ +RK W +P + ++ ++ + + L + G+ PD
Sbjct: 148 KEGEIRLSQSVFDAIRK--WGLRPSVVSFNTLMNGYIRQGDLDKGFRLKSAMHASGVQPD 205
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
Y+ +I + +D+A E + M G P+ +TFT LI G+ +L + +
Sbjct: 206 VYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLAMEIYK 265
>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1136
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 15/158 (9%)
Query: 79 LEEGFQSR-----IC--RLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLY 131
L GF R +C R+ ++D L + LD A+ + N + K+ PD+ Y
Sbjct: 426 LARGFYMRMKRNGVCVGRITYTGMIDGLC---KNGFLDEAVVLLNEMSKD-GIDPDIVTY 481
Query: 132 SDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA 191
S +I K + A+E+ C + + GL P+ +Y+ +I ++G + +A+ YE M
Sbjct: 482 SALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMIL 541
Query: 192 SGCTPHKLTFTILIRNLENAGE----EELVAAVRRDCI 225
G T TF +L+ +L AG+ EE + + D I
Sbjct: 542 EGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGI 579
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 101 ELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD 160
+L R N + + +RK + + P+ Y+ +I ++ +A +L E+ GL
Sbjct: 312 DLCRSNRIAKGYLLLRDMRKRMIH-PNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLS 370
Query: 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
P+ + +I ++ G +A++ + M+A G TP ++++ +L+ L E +L
Sbjct: 371 PNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDL 426
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
ALK+F + + ++S Y ++ L KN + +A + +K+ G+ YT MI
Sbjct: 392 ALKMFYMMEAKGLTPSEVS-YGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMI 450
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRR 222
+ G +D+A+ M G P +T++ LI G +E+V + R
Sbjct: 451 DGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYR 506
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 134 MILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG 193
M+ +L +N + + + E+ K+G+ P++R Y +I +VG I A E M A
Sbjct: 905 MVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHK 964
Query: 194 CTPHKLTFTILIRNLENAGEEE 215
P + + ++R L G+ +
Sbjct: 965 ICPPNVAESAMVRALAKCGKAD 986
>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Cucumis sativus]
Length = 904
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 9/150 (6%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+ +D AL + + ++ +PD+ LY+ I GK ++ MA + F E+K GL D
Sbjct: 247 REGRVDAALSLLDEMKSNSL-EPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDD 305
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV--- 220
YT MIGV + +++A+E +E M + P + +I AG+ E ++
Sbjct: 306 VTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLER 365
Query: 221 --RRDCIQYVEFPERFLEEVYQKHRKTQVD 248
R+ CI V L + RK QVD
Sbjct: 366 QRRKGCIPSVVSYNCILSCL---GRKGQVD 392
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 46/86 (53%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E+ Y ++ L++ +I + + ++ A L E+K L+PD +Y I + + G +
Sbjct: 227 QELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKV 286
Query: 180 DKAMETYETMKASGCTPHKLTFTILI 205
D A + + MKA+G +T+T +I
Sbjct: 287 DMAWKFFHEMKANGLVLDDVTYTSMI 312
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K + + PD Y+ +I L K A ELF +K++G DTR Y +I + + G +
Sbjct: 576 KNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKV 635
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNL 208
+KA + E MK G P +T+ +I L
Sbjct: 636 NKAYQLLEEMKTKGHEPTVVTYGSVIDGL 664
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL L + + + K +I LF E+K G PD R YT +I ++ G +A E
Sbjct: 547 PDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYEL 606
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+ TMK GC + +I +G+
Sbjct: 607 FYTMKEQGCVLDTRAYNTVIDGFCKSGK 634
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
++ +YS +I GK +I A + EL ++GL P+ + ++ ++ I +A+ +
Sbjct: 688 NVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCF 747
Query: 187 ETMKASGCTPHKLTFTILIRNL 208
++MK CTP+ +T++ILI L
Sbjct: 748 QSMKDLKCTPNYITYSILIHGL 769
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 37/152 (24%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMA---------EE 149
L+ L R+ ++D ALK F ++K+ P+LS Y+ MI ML K ++ A
Sbjct: 382 LSCLGRKGQVDEALKKFEEMKKDAI--PNLSTYNIMIDMLCKAGKLETALVVRDAMKDAG 439
Query: 150 LF-------------CELKK--------EGLD-----PDTRVYTEMIGVYLQVGMIDKAM 183
LF C+ ++ EGLD PD Y +I + G +D+A
Sbjct: 440 LFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAY 499
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ YE M + P+ + +T LIRN G +E
Sbjct: 500 KLYEQMLDANQIPNAVVYTSLIRNFFKCGRKE 531
Score = 43.1 bits (100), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++P + Y +I L K ++ A LF E K +G++ + +Y+ +I + +VG ID+A
Sbjct: 650 HEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAY 709
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGE 213
E + G TP+ T+ L+ L A E
Sbjct: 710 LIMEELMQKGLTPNVYTWNCLLDALVKAEE 739
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LLD L + E+ AL F + K++ P+ YS +I L K ++ A + E+
Sbjct: 730 LLDALV---KAEEISEALVCFQSM-KDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEM 785
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
+K+G P+ YT MI + G I +A +E K G + +I L NA
Sbjct: 786 QKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNA 842
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 4/121 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
++D L + +R LD A +F + + +PD Y +I LG++ ++ A +L+ ++
Sbjct: 450 MVDRLCKAQR---LDDACSIFEGLDHKTC-RPDAVTYCSLIEGLGRHGRVDEAYKLYEQM 505
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
P+ VYT +I + + G + + Y M GC+P L + + AGE
Sbjct: 506 LDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEI 565
Query: 215 E 215
E
Sbjct: 566 E 566
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/106 (20%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 113 KVFNFVR--KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
+ F F++ +++ ++P S Y+++I L ++ LF ++++ G + ++T +I
Sbjct: 183 EAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLI 242
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
V+ + G +D A+ + MK++ P + + + I AG+ ++
Sbjct: 243 RVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDM 288
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 78/183 (42%), Gaps = 8/183 (4%)
Query: 32 SGKKIQALTVTCGLRDANKKPMWRSRVLSSEAI--QAVHAMKLAKSSSKLEEGFQSRICR 89
+GK AL V ++DA P V++ + + A +L + S + EG + CR
Sbjct: 422 AGKLETALVVRDAMKDAGLFP----NVITVNIMVDRLCKAQRLDDACS-IFEGLDHKTCR 476
Query: 90 LLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEE 149
+ L R +D A K++ + + P+ +Y+ +I K + +
Sbjct: 477 PDAVTYCSLIEGLGRHGRVDEAYKLYEQML-DANQIPNAVVYTSLIRNFFKCGRKEDGHK 535
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209
++ E+ + G PD + + + G I+K ++ +K G P ++TILI L
Sbjct: 536 IYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLV 595
Query: 210 NAG 212
AG
Sbjct: 596 KAG 598
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + Y+ ++ LG+ Q+ A + F E+KK+ + P+ Y MI + + G ++ A+
Sbjct: 373 PSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAI-PNLSTYNIMIDMLCKAGKLETALVV 431
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ MK +G P+ +T I++ L
Sbjct: 432 RDAMKDAGLFPNVITVNIMVDRL 454
>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
Length = 826
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 52/93 (55%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + YS +I + ++ A+ L E++KEGL P+ YT +IG Y ++G +DK +
Sbjct: 664 PTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNV 723
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
+ M + P+K+T+T++I +G+ + A
Sbjct: 724 LQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAA 756
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L+ L + NEL+ + VF +R+ V PD+ L+S I K ++ A +LF +++K G
Sbjct: 219 LSSLVKANELEKSYWVFETMRQGV--SPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLG 276
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ P+ Y +I + G +D+A E M G +T+++LI L
Sbjct: 277 VSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGL 326
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 7/145 (4%)
Query: 77 SKLEEGFQSRICRLLKADLLDTLT------ELRRQNELDLALKVFNFVRKEVWYKPDLSL 130
K+EEGF+ R + + DT T + R +LD A+ ++N + P++
Sbjct: 540 GKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLV-PNVYT 598
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y MI K +I E+LF EL + L+ ++ VY +I Y + G +A + ++ M+
Sbjct: 599 YGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMR 658
Query: 191 ASGCTPHKLTFTILIRNLENAGEEE 215
+ G P T++ LI + N G E
Sbjct: 659 SKGIPPTTATYSSLIHGMCNIGRME 683
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 40/75 (53%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ +I K ++ +L E+ K+G++PDT Y +I ++G +D+A+ + K
Sbjct: 529 YNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECK 588
Query: 191 ASGCTPHKLTFTILI 205
+ P+ T+ ++I
Sbjct: 589 SRDLVPNVYTYGVMI 603
>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
Length = 418
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R +LD K+ N + +PD+ YS +I L K ++ A +LF E+ +GL P+
Sbjct: 183 RLGDLDQGFKLKNAMHAS-GVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNG 241
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+T +I + + G +D AMETY+ M + P +T+ LI L G+
Sbjct: 242 VTFTTLIDGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGD 291
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PDL Y+ +I L K + A++L E++ +GL PD YT +I + G +D A
Sbjct: 272 FLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTLIDGNCKEGDLDSAF 331
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAG 212
E ETM + +T LI L G
Sbjct: 332 ELRETMVKESIRLDDVAYTALISGLCQEG 360
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 114 VFNFVRK--EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIG 171
V+ F ++ E Y L ++ ++ K +I +A+ +F + K GL P + ++
Sbjct: 120 VWGFYKEILECGYPASLYFFNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMN 179
Query: 172 VYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
Y+++G +D+ + M ASG P T+++LI L
Sbjct: 180 GYIRLGDLDQGFKLKNAMHASGVQPDVYTYSVLINGL 216
>gi|356546358|ref|XP_003541593.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g24830-like [Glycine max]
Length = 577
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 48/89 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
K D+ Y+ +I K++Q+ +A CE+ K+GL PD Y +IG + G I +A
Sbjct: 294 KVDVVAYNVLINGFCKSQQMNLAYGYACEMFKKGLLPDAFTYNIIIGALCKEGKISEACY 353
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
T M G P ++T+ I+IR L AGE
Sbjct: 354 TVGVMSNMGIMPDQITYQIVIRGLCFAGE 382
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+ +IL K+ A L E+ + L PD Y +IG +G +D A+
Sbjct: 435 PNVFTYNALILAQVKSGNFHGACSLKEEMISKCLFPDVVTYNLLIGAACNIGRLDFALLL 494
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRRDCIQYVEFPERFLEEVYQK 241
++ M G P +T+T L+R G+ EEL A + + + P + L Y K
Sbjct: 495 HDQMVQRGYEPDLITYTELVRGFCIRGKMKEAEELYAKILKSGLLNDHVPVQILFNKYCK 554
>gi|225446845|ref|XP_002279656.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
mitochondrial-like [Vitis vinifera]
Length = 844
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 73/140 (52%), Gaps = 4/140 (2%)
Query: 81 EGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK 140
+GF R + L+++ + +L+ AL++++ ++K ++P+ LY+ ++ K
Sbjct: 381 QGFGLRPSATMYVSLIESFV---KAGKLETALRIWDEMKK-AGFRPNYGLYTMVVESHAK 436
Query: 141 NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT 200
+ ++ A +F +++K G P Y+ ++ ++ G +D AM+ Y +M +G P T
Sbjct: 437 SGKLETAMSVFSDMEKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYNSMTNAGLRPGLST 496
Query: 201 FTILIRNLENAGEEELVAAV 220
+T L+ L N ++ A V
Sbjct: 497 YTALLTLLANKKLVDVAAKV 516
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 40/151 (26%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYK-----------------PDL----SLYSDMILMLGK 140
L+ + D +L +F + +++ WY D SL+ +MI G
Sbjct: 183 LKIVTDTDASLSLFRWAKRQPWYSMLNDECYALLFDRLNQSRDFDAIQSLFDEMIRDSGD 242
Query: 141 N-------------KQIAMAEEL---FCELKK---EGLDPDTRVYTEMIGVYLQVGMIDK 181
N + +A AE+L FC KK G DT Y +I ++L G+ K
Sbjct: 243 NNGVSSVIACNQVVRDLAKAEKLEVAFCCFKKVQDSGCKIDTATYNSLITLFLNKGLPYK 302
Query: 182 AMETYETMKASGCTPHKLTFTILIRNLENAG 212
A E YE+M+A+GC T+ ++I +L +G
Sbjct: 303 AFEVYESMEAAGCLLDGSTYELMIPSLAKSG 333
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D S Y MI L K+ ++ A +LF E+K++ L P V+ ++ + G +D +M+ Y
Sbjct: 318 DGSTYELMIPSLAKSGRLDAAFKLFQEMKEKNLRPSFLVFASLVDSMGKAGRLDTSMKVY 377
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEE 215
M+ G P + LI + AG+ E
Sbjct: 378 MEMQGFGLRPSATMYVSLIESFVKAGKLE 406
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 92/212 (43%), Gaps = 32/212 (15%)
Query: 13 LKFHFSQMGFHQRPQISL---------PSGKKIQALTVTCGLRDANKKPMWRSRVLSSEA 63
+K + GF RP ++ +GK AL + ++ A +P + + E+
Sbjct: 374 MKVYMEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVES 433
Query: 64 IQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDT------LTELRR-QNELDLALKVFN 116
HA S KLE S + KA L T L E+ ++D A+K++N
Sbjct: 434 ----HA-----KSGKLETA-MSVFSDMEKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYN 483
Query: 117 FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176
+ +P LS Y+ ++ +L K + +A ++ E+K G D ++++ VY++
Sbjct: 484 SM-TNAGLRPGLSTYTALLTLLANKKLVDVAAKVLLEMKAMGFSVDVSA-SDVLMVYIKD 541
Query: 177 GMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
G +D A+ M +SG T +IR L
Sbjct: 542 GSVDLALRWLRFMGSSGIR----TNNFIIRQL 569
>gi|414588908|tpg|DAA39479.1| TPA: chloroplast RNA splicing4 [Zea mays]
Length = 1438
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E + PD Y+ ++ K + E +L K G + Y MI +Y ++G +D
Sbjct: 356 EKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRLD 415
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNL 208
A+ Y+ M+A GCTP +T+T++I +L
Sbjct: 416 LAVGLYDEMRAMGCTPDAVTYTVMIDSL 443
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ LDLA+ +++ +R + PD Y+ MI LGK +IA A ++ ++ GL P
Sbjct: 410 KMGRLDLAVGLYDEMRA-MGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTL 468
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ +I Y + G A T++ M ASG P +L + +++ +G+ E
Sbjct: 469 IAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTE 520
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 1/125 (0%)
Query: 81 EGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK 140
E Q ++ K+ +L L + ++ +K++N + K Y P++ LY MI +L
Sbjct: 839 EELQDMNFKISKSTVLLLLDAFAKAGDVFEVMKIYNGM-KAAGYLPNMHLYRSMISLLCH 897
Query: 141 NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT 200
+ + E + E++ G PD + ++ +Y G D+ + Y ++ +G P + T
Sbjct: 898 HNRFRDVELMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDT 957
Query: 201 FTILI 205
+ LI
Sbjct: 958 YNTLI 962
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 137 MLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP 196
+LG+ +Q ++AEE+F EG +V+ M+GVY + G D A + +TM G P
Sbjct: 197 VLGRARQDSIAEEVFLRFAGEG--ATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDP 254
Query: 197 HKLTFTILIRNLENAG 212
++F LI +G
Sbjct: 255 DLVSFNTLINARSKSG 270
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+K + Y+ MI M GK ++ +A L+ E++ G PD YT MI ++ I +A
Sbjct: 394 FKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAG 453
Query: 184 ETYETMKASGCTPHKLTFTILI---------RNLENAGEEELVAAVRRDCIQYV 228
+ E M +G P + F+ LI + EN + + + V+ D + Y+
Sbjct: 454 KVLEDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYL 507
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 126 PDLSLYSDMILMLGKNKQIA--MAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
PDL ++ +I K+ +A +A +L E+++ GL PD Y +I Q ++ A+
Sbjct: 254 PDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAV 313
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
+E M AS C P T+ ++ G+ E + R+ ++ P+
Sbjct: 314 TVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPD 362
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E +PD Y+ +I+M ++ + L E+ K GL P + Y ++ + + +
Sbjct: 948 EAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELRE 1007
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRRDCIQ 226
+A + +E M++ ++ + ++++ NAG E L+A ++ D I+
Sbjct: 1008 QADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIE 1057
>gi|225425456|ref|XP_002272556.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01570
[Vitis vinifera]
Length = 792
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + DLA V + + K+ Y D+ +Y+ +I LGK +I A +LF +++ G++P
Sbjct: 665 LGKMGRADLASAVLDMLMKQGGYL-DIVMYNTLINALGKAGRIDEATKLFEQMRSSGINP 723
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTIL 204
D + +I ++ + G + A + + M +GC+P+ +T T L
Sbjct: 724 DVVTFNTLIEIHAKAGQLKAAYKFLKLMLDAGCSPNHVTDTTL 766
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 60/115 (52%), Gaps = 1/115 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+T ++ + A VF+ + ++V PD++ Y+ +I LGK + +A + L K+G
Sbjct: 627 MTAFVKKGYFNEAWGVFHEMGEKV-CPPDIATYNVIIQGLGKMGRADLASAVLDMLMKQG 685
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
D +Y +I + G ID+A + +E M++SG P +TF LI AG+
Sbjct: 686 GYLDIVMYNTLINALGKAGRIDEATKLFEQMRSSGINPDVVTFNTLIEIHAKAGQ 740
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 136 LMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCT 195
+ L K K +++A +LF G+DP Y M+ +++ G ++A + M C
Sbjct: 594 IFLAKGK-LSLACKLFEIFSNMGVDPVIYTYNSMMTAFVKKGYFNEAWGVFHEMGEKVCP 652
Query: 196 PHKLTFTILIRNLENAGEEELVAAV 220
P T+ ++I+ L G +L +AV
Sbjct: 653 PDIATYNVIIQGLGKMGRADLASAV 677
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 14/123 (11%)
Query: 95 LLDTLTELRRQNELDLALKVF-----NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEE 149
LLD L + R+ E A +VF + VR W ++ +I L +N + A
Sbjct: 348 LLDGLFKARKVME---ACQVFEKMVEDGVRASCW------THNIVICGLFRNGRAAAGYT 398
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209
LFC+LKK+G D Y+ ++ + G +++A++ E M+A G +T T L+
Sbjct: 399 LFCDLKKKGKFVDGITYSIVVLQLCREGQLEEALQLVEEMEARGFVVDLVTITSLLIGFH 458
Query: 210 NAG 212
G
Sbjct: 459 KQG 461
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PDL Y+ +I +L ++ A ++ ELK G +PD Y +I + +D AM
Sbjct: 268 FGPDLCTYNSLIRVLCLVGKVKDALIVWEELKGSGHEPDAFTYRILIQGCSKSYRMDDAM 327
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENA 211
+ M+ +G P + + L+ L A
Sbjct: 328 RIFNEMQYNGFCPDTIVYNTLLDGLFKA 355
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 4/103 (3%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++PD Y +I K+ ++ A +F E++ G PDT VY ++ + + +A
Sbjct: 303 HEPDAFTYRILIQGCSKSYRMDDAMRIFNEMQYNGFCPDTIVYNTLLDGLFKARKVMEAC 362
Query: 184 ETYETMKASG----CTPHKLTFTILIRNLENAGEEELVAAVRR 222
+ +E M G C H + L RN A L +++
Sbjct: 363 QVFEKMVEDGVRASCWTHNIVICGLFRNGRAAAGYTLFCDLKK 405
>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
Length = 564
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%)
Query: 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
AD L L R + AL++F P + Y+ +I L K+ + ELF
Sbjct: 2 ADYNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFE 61
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
EL + G PD Y +I + G +++A + M + GC P+ +T+++LI L G
Sbjct: 62 ELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVG 121
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + ++D A VF+ + Y P++ Y+ ++ L K ++ A + + +G+ P
Sbjct: 191 LCKCGQIDEACSVFDDMIAG-GYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTP 249
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH-----KLTFTILIRNLENAGEEEL 216
D Y+ ++ + + +D+A+E M + GCTP+ K+TF ILI AG E
Sbjct: 250 DVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQ 309
Query: 217 VAAV 220
+A+
Sbjct: 310 ASAL 313
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 119 RKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGL--DPDTRVYTEMIGVYLQV 176
RK P++ Y+ + L K A A EL L+ L PDT ++ +I +
Sbjct: 135 RKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKC 194
Query: 177 GMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
G ID+A ++ M A G P+ +T+ L+ L A + E
Sbjct: 195 GQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKME 233
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y ++ L + + A +L ELK G DPDT Y ++ + G ++A+
Sbjct: 394 PDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITV 453
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
E M G P TF L +G
Sbjct: 454 LEEMVGKGHQPDSFTFAACFSGLHRSGN 481
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 111 ALKVFNFVRKEVWY--------KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
A K NF + + +PD+ + +I L K Q+ A ++ + G+ P+
Sbjct: 301 ACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPN 360
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
Y ++ + G I++A + E M +SGC P +T+ L+ L
Sbjct: 361 VVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYAL 406
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L + N+L +++F + E + PD+ Y+ +I L K + A L ++ G
Sbjct: 44 INGLCKSNDLGAGMELFEEL-VERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRG 102
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCT--PHKLTFTILIRNL 208
P+ Y+ +I +VG ID+A E + M C P+ +T+ + L
Sbjct: 103 CVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGL 154
Score = 37.0 bits (84), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD ++ +I K A LF E+ + L PD + +I + G ++ A +
Sbjct: 289 PDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDI 348
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ M G P+ +T+ L+ L +G E
Sbjct: 349 LDLMGNLGVPPNVVTYNALVHGLCKSGRIE 378
>gi|224136626|ref|XP_002322376.1| predicted protein [Populus trichocarpa]
gi|222869372|gb|EEF06503.1| predicted protein [Populus trichocarpa]
Length = 715
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 12/132 (9%)
Query: 88 CRLLKADL-----LDTLT------ELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMIL 136
C+LLK DT+T EL R+ + AL F+ + K +PD+ Y+ +I
Sbjct: 462 CKLLKKGFRLGLQADTVTYTILISELCRRADTREALVFFSKMFK-AGVQPDMHTYNTLIA 520
Query: 137 MLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP 196
+ +++ +E+LF E GL P YT MI Y + + A++ + M GCTP
Sbjct: 521 AFSRQRRMEESEKLFAEAVGLGLVPTKETYTSMICGYCRDRNVSLALKFFNRMSDHGCTP 580
Query: 197 HKLTFTILIRNL 208
LT+ LI L
Sbjct: 581 DSLTYGALISGL 592
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
YKP++ Y+ MI K ++ AE L +K++GL P+T+ YT +I + + G +KA
Sbjct: 368 YKPNVHTYTSMIHGYCKEDKLNRAEMLLSRMKEQGLVPNTKTYTCLIDGHSKAGNFEKAY 427
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAG 212
E + M G + + T+ I +L G
Sbjct: 428 ELMDLMGKEGFSANIFTYNAFIDSLCKKG 456
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 13/152 (8%)
Query: 76 SSKLEEGFQSRICRL--------LKADLLD---TLTELRRQNELDLALKVFNFVRKEVWY 124
S+ E+GF SR+ LK +L++ + L ++ + A ++ + K+ W
Sbjct: 274 STFCEKGFASRVFWYFDKWVELGLKPNLINFTSLINGLCKRGSIKQAFEMLEEMVKKGW- 332
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCEL-KKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
KP++ ++ +I L K A LF +L + + P+ YT MI Y + +++A
Sbjct: 333 KPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDDYKPNVHTYTSMIHGYCKEDKLNRAE 392
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
MK G P+ T+T LI AG E
Sbjct: 393 MLLSRMKEQGLVPNTKTYTCLIDGHSKAGNFE 424
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P Y+ MI +++ +++A + F + G PD+ Y +I + +D+A +
Sbjct: 545 PTKETYTSMICGYCRDRNVSLALKFFNRMSDHGCTPDSLTYGALISGLCKESKLDEACQL 604
Query: 186 YETMKASGCTPHKLT 200
YE M G +P ++T
Sbjct: 605 YEAMVDKGLSPCEVT 619
>gi|356541430|ref|XP_003539180.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Glycine max]
Length = 492
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ Y+ +I G+ ++ A+ +F E+ KEG+ P+ Y +I V+ + + A+ +
Sbjct: 274 DVVSYTTVIHGFGEAGEVKKAKRVFDEMVKEGVAPNVATYNALIQVFCKKDSVQNAVAVF 333
Query: 187 ETMKASG-CTPHKLTFTILIRNLENAGEEE 215
E M G C+P+ +TF ++IR L + G+ E
Sbjct: 334 EEMVREGVCSPNVVTFNVVIRGLCHVGDME 363
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P + Y+ M+ ++ QI A E + E+KK + D YT +I + + G + KA
Sbjct: 237 EPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVSYTTVIHGFGEAGEVKKAKR 296
Query: 185 TYETMKASGCTPHKLTFTILIR 206
++ M G P+ T+ LI+
Sbjct: 297 VFDEMVKEGVAPNVATYNALIQ 318
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++PD Y+ + K+ MA + E+ + G++P Y M+ Y + I +A
Sbjct: 201 FRPDTVSYNILANGYCLKKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAW 260
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGE 213
E Y MK C +++T +I AGE
Sbjct: 261 EFYLEMKKRKCEIDVVSYTTVIHGFGEAGE 290
>gi|255660948|gb|ACU25643.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
Length = 484
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K++ E F E+K ++P YT +I Y+ V ID A+
Sbjct: 183 PDVITYNTMINGYYRVKKMEEXENYFMEMKGRNIEPTVVTYTTLIKGYVSVDRIDDALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L NA
Sbjct: 243 VEEMKGFGINPNAITYSTLLPGLCNA 268
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y + ++ + + MA+ F ++ EG++P + MI + G +D A +E MK
Sbjct: 118 YDALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNFMIWGFFLSGKVDTANRFFEXMK 177
Query: 191 ASGCTPHKLTFTILI 205
+ P +T+ +I
Sbjct: 178 SREIMPDVITYNTMI 192
>gi|255660878|gb|ACU25608.1| pentatricopeptide repeat-containing protein [Verbena hispida]
Length = 484
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K++ AE+ F E+K ++P YT +I Y+ V +D +
Sbjct: 183 PDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDXLRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L NA
Sbjct: 243 VEEMKGFGIKPNAITYSTLLPGLCNA 268
Score = 36.6 bits (83), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 38/75 (50%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ + ++ + + MA+ F ++ EG++P + MI + G ++ A +E MK
Sbjct: 118 YNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177
Query: 191 ASGCTPHKLTFTILI 205
+ +P +T+ +I
Sbjct: 178 SREISPDVVTYNTMI 192
>gi|224084978|ref|XP_002307458.1| predicted protein [Populus trichocarpa]
gi|222856907|gb|EEE94454.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 4/121 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
++D L + R +E AL + N + V KP +YS ++ G +I A F E+
Sbjct: 200 MVDVLCKAGRVDE---ALGIVNEMDSTV-CKPTPFIYSVLVHTYGIENRIEDAVSTFLEM 255
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
+ G++PD VY +IG + + + M G TP+ TF I++ +L GE
Sbjct: 256 ENNGIEPDVAVYNALIGAFCKANRLKNVYRVLNEMDCKGVTPNSRTFNIILSSLIGRGET 315
Query: 215 E 215
+
Sbjct: 316 D 316
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 4/120 (3%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L+ L + + A ++F+ ++ + PD YS ++ GK+ + A E+F E+ G
Sbjct: 132 LSALCKSKNVRKAQEIFDSIKDR--FVPDSKTYSILLEGWGKDPNLPKAREIFREMVSNG 189
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR--NLENAGEEEL 216
PD Y M+ V + G +D+A+ M ++ C P +++L+ +EN E+ +
Sbjct: 190 CRPDIVTYGIMVDVLCKAGRVDEALGIVNEMDSTVCKPTPFIYSVLVHTYGIENRIEDAV 249
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R +++ A+ FN + K P+L+ ++ ++ L K+K + A+E+F +K + PD+
Sbjct: 102 RAQKVEEAVYTFNIMDKYD-VPPNLAAFNGLLSALCKSKNVRKAQEIFDSIKDRFV-PDS 159
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ Y+ ++ + + + KA E + M ++GC P +T+ I++ L AG
Sbjct: 160 KTYSILLEGWGKDPNLPKAREIFREMVSNGCRPDIVTYGIMVDVLCKAG 208
>gi|399216092|emb|CCF72780.1| unnamed protein product [Babesia microti strain RI]
Length = 1520
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 54/105 (51%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L N LD AL + ++K KP+ +YS +I G+ KQ+ A ++ + EG+ P
Sbjct: 988 LVSNNMLDEALSLLKDMKKNSNIKPNTIIYSTLIKGFGQTKQLNKALNIYLTMLDEGVVP 1047
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
+T Y +I +VG ++KA E M + P +TF+ +I+
Sbjct: 1048 NTITYNSIIDACARVGDMNKAANLLEDMLNNNIEPDLITFSTVIK 1092
Score = 39.7 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG-LDPDTRVYTEMIGVYLQVGMIDKA 182
Y+ + Y M L N + A L ++KK + P+T +Y+ +I + Q ++KA
Sbjct: 974 YELNEVTYGCMFDALVSNNMLDEALSLLKDMKKNSNIKPNTIIYSTLIKGFGQTKQLNKA 1033
Query: 183 METYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCI 225
+ Y TM G P+ +T+ +I G+ A + D +
Sbjct: 1034 LNIYLTMLDEGVVPNTITYNSIIDACARVGDMNKAANLLEDML 1076
Score = 37.0 bits (84), Expect = 7.8, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
Q+ +D +L++ + E KPD LY+ ++ K+ + + ++L+ E+++ G+ P
Sbjct: 1097 QSNMDRSLQLLRAM-SERGIKPDGILYNSLLDGCVKSGRPWLCQQLWDEMQENGIAPSNF 1155
Query: 165 VYTEMIGVYLQVGMIDKAMETYETM 189
T +I +Y ++G +DKA + + +
Sbjct: 1156 TLTILIKMYGRLGQLDKAFQLMDEL 1180
>gi|302798519|ref|XP_002981019.1| hypothetical protein SELMODRAFT_114007 [Selaginella moellendorffii]
gi|300151073|gb|EFJ17720.1| hypothetical protein SELMODRAFT_114007 [Selaginella moellendorffii]
Length = 448
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 5/159 (3%)
Query: 91 LKADLLDTLTE-LRRQNELDLALKVF-NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAE 148
L A + + L E L R ++++ AL+V V K P L Y+ +I+ K ++ A
Sbjct: 288 LDAGIYNVLIEGLCRASKVEEALEVTAGMVDKGCI--PTLQTYNALIMGFFKANEVDKAL 345
Query: 149 ELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+LF ++++G P+T +Y+ I +VG I++A E ++ GC P +T+ LIR L
Sbjct: 346 QLFRAMEEKGFSPNTMIYSTFIDGLCKVGKINEAHEFFQQSVERGCVPDNVTYNALIRGL 405
Query: 209 ENAGEEELVAAVRRDCIQYVEFPERFLEEV-YQKHRKTQ 246
A + + R+ + +R L + +Q+ R+ Q
Sbjct: 406 FGANRMDEAHRLYREMGERGYIADRSLRTLAFQRSREEQ 444
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Query: 114 VFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY 173
V ++K V PD Y+ +I +L K+ + A ++F + ++ + P+ VYT ++ +
Sbjct: 138 VGEMIKKSV---PDGMTYTALISVLCKHNRADDAMKVFDIMVEKEIVPNVDVYTSLLAAH 194
Query: 174 LQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
+ +D A + M G P T+ +L+R L N G L
Sbjct: 195 CRTRKLDGAYRLFVEMIQRGYGPSASTYGLLLRCLCNGGRSYL 237
>gi|255551665|ref|XP_002516878.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543966|gb|EEF45492.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 714
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 125 KPDLSLYSDMILMLGK-NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+PD Y+ +I G+ NK MA F +KK G+ P + YT +I Y G +KA
Sbjct: 435 QPDAKSYTCLISAYGRQNKMTDMAANAFLRMKKVGIKPTSHSYTALIHAYSVSGWHEKAY 494
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
T+E M+ G P T+T L+ +G+ +
Sbjct: 495 STFENMQTEGIKPSIETYTALLDAFRRSGDTQ 526
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY-LQVGMIDKAM 183
KP + ++ ++ + Q + EEL E++ GL PD + YT +I Y Q M D A
Sbjct: 400 KPTSATFNILMDAYSRRMQPEIVEELLLEMQDAGLQPDAKSYTCLISAYGRQNKMTDMAA 459
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ MK G P ++T LI +G E
Sbjct: 460 NAFLRMKKVGIKPTSHSYTALIHAYSVSGWHE 491
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 2/110 (1%)
Query: 104 RQNEL-DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
RQN++ D+A F K+V KP Y+ +I + A F ++ EG+ P
Sbjct: 450 RQNKMTDMAANAF-LRMKKVGIKPTSHSYTALIHAYSVSGWHEKAYSTFENMQTEGIKPS 508
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
YT ++ + + G M ++ M + ++TF IL+ G
Sbjct: 509 IETYTALLDAFRRSGDTQTLMRIWKMMMSEKVEGTRVTFNILLDGFAKQG 558
>gi|115460498|ref|NP_001053849.1| Os04g0612800 [Oryza sativa Japonica Group]
gi|38568022|emb|CAE05207.3| OSJNBa0070C17.14 [Oryza sativa Japonica Group]
gi|113565420|dbj|BAF15763.1| Os04g0612800 [Oryza sativa Japonica Group]
Length = 784
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R +LD ++++ +R+ +P LY+ ++ ++ ++ +A +LF +++K G P
Sbjct: 343 LVRAGKLDAGMELWEEMRRG-GLRPSFGLYTMVVEANARSGRLDVATQLFGDMEKSGFFP 401
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
Y ++ ++ G +D AM Y +M +G P TFT L+ L N +L A V
Sbjct: 402 TPATYACLVEMHASAGQVDAAMRLYHSMANAGQRPGLSTFTALLMMLANKRMLDLAAKV 460
Score = 37.0 bits (84), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R LD+A ++F + K ++ P + Y+ ++ M Q+ A L+ + G P
Sbjct: 380 RSGRLDVATQLFGDMEKSGFF-PTPATYACLVEMHASAGQVDAAMRLYHSMANAGQRPGL 438
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
+T ++ + M+D A + MKASG P ++T + L+ G EL
Sbjct: 439 STFTALLMMLANKRMLDLAAKVLLEMKASGF-PIEVTASDLLMIYIKEGSTEL 490
>gi|302757495|ref|XP_002962171.1| hypothetical protein SELMODRAFT_77736 [Selaginella moellendorffii]
gi|300170830|gb|EFJ37431.1| hypothetical protein SELMODRAFT_77736 [Selaginella moellendorffii]
Length = 731
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 14/152 (9%)
Query: 61 SEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRK 120
++A+ AM+ +S E F S I L K LL+ L +V V K
Sbjct: 455 TDAVTVFEAME-KDGASPNEASFNSLIQLLCKGRLLEILQ------------RVLVLV-K 500
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
+KP L+ S ++ G ++ AE +F E+ G++ D Y+ ++ Y + G
Sbjct: 501 AAGFKPSLASCSSVVSFYGDMGRVREAERVFKEMLASGVEADVICYSALLNAYAEAGFAR 560
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+A +T +++KA+G P + +T +++ N G
Sbjct: 561 EAQQTLDSLKAAGFVPDTIVYTSMMKLYSNLG 592
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 86 RICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIA 145
R RL +L L+E Q + A++VF++ +++ Y+ ++ LY+ ++ LG+ +
Sbjct: 78 RAGRLESRELSRILSE---QRDWRKAIEVFSWFQRQDNYEANVFLYNILLRTLGRAAKWE 134
Query: 146 MAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
+ ++ + E+ E + P Y+ ++ V+ + GM D+A+ Y M SG P ++
Sbjct: 135 LLQKYWSEMLGERVPPTIFTYSILVDVHGRAGMKDEAIRFYRHMIESGVEPDEV 188
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 39/80 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD++ Y+ +I M KN ++ + ++ G+ PD + +I Y ++ KA
Sbjct: 298 PDVATYNSLIEMYVKNDKLELVSGCLERMRDSGVSPDQVTFRTLISAYAANNVVWKAEAL 357
Query: 186 YETMKASGCTPHKLTFTILI 205
+ M+ SG + +T++I
Sbjct: 358 VQEMEGSGFFIDQAMYTVMI 377
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
L D R + +I +Y++ G++ +A+E + M+ +G P + TF+ LE AG
Sbjct: 677 LITDARAFNGVIAMYVKAGLMREALEALKEMRRAGLVPSRSTFSCFEEILERAG 730
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 10/111 (9%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
Q LD +LK FV + Y + LYS++ L A AE+++ E+ + L PD
Sbjct: 563 QQTLD-SLKAAGFVPDTIVYTSMMKLYSNLGL-------TAEAEKIYEEISR--LSPDVF 612
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
M+ +Y++ GM +A + + M+ +++ T++++ AG+ E
Sbjct: 613 AANTMLNLYIKSGMFTEAEQLFRAMQRGKPGLNEVACTMMLKLYREAGKIE 663
>gi|224134841|ref|XP_002321918.1| predicted protein [Populus trichocarpa]
gi|222868914|gb|EEF06045.1| predicted protein [Populus trichocarpa]
Length = 159
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE P + Y+ +I LG+ + + F E+ K G PD YT MI Y+ G +
Sbjct: 2 KEASIDPTVLHYTTLIDGLGRAGNLLGCQYFFDEMIKAGCIPDVVCYTVMITGYIMNGEL 61
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+KA E +E M +G P+ T+ +IR L AG+ E
Sbjct: 62 EKAQEMFEDMIVNGQLPNVFTYNSMIRGLCMAGKFE 97
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI N ++ A+E+F ++ G P+ Y MI G ++A
Sbjct: 43 PDVVCYTVMITGYIMNGELEKAQEMFEDMIVNGQLPNVFTYNSMIRGLCMAGKFEEACSM 102
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+ M++ GC P+ + L+RNL NAG+
Sbjct: 103 LKEMESRGCNPNFHVYRTLVRNLRNAGK 130
>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A +F+ +R E + ++ Y+ +I + + +++ AE+L ++KK + P+ Y +I
Sbjct: 286 AFDLFDEMR-ERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLI 344
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
G + VG +DKA + +K++G +P +T+ ILI AG + VA + R+
Sbjct: 345 GGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLARE 397
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L R N + A FN +++ V K D+ + MI +N + + +L L+ G
Sbjct: 135 LGSLVRSNCFEKAWLFFNELKERV--KFDVYSFGIMIKGCCENGNLDKSFQLLGLLQDMG 192
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
L P+ +YT +I + G I++A ++ M G ++ TFT+LI L G
Sbjct: 193 LSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKG 246
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K+ P+L Y+ +I + A L +LK GL P Y +I Y + G
Sbjct: 329 KKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNW 388
Query: 180 DKAMETYETMKASGCTPHKLTFTILI 205
+ M+ G +P K+T T+LI
Sbjct: 389 KGVADLAREMEGRGISPSKVTCTVLI 414
>gi|413952776|gb|AFW85425.1| chloroplast RNA splicing4 [Zea mays]
Length = 1435
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E + PD Y+ ++ K + E +L K G + Y MI +Y ++G +D
Sbjct: 356 EKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRLD 415
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNL 208
A+ Y+ M+A GCTP +T+T++I +L
Sbjct: 416 LAVGLYDEMRAMGCTPDAVTYTVMIDSL 443
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ LDLA+ +++ +R + PD Y+ MI LGK +IA A ++ ++ GL P
Sbjct: 410 KMGRLDLAVGLYDEMRA-MGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTL 468
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ +I Y + G A T++ M ASG P +L + +++ +G+ E
Sbjct: 469 IAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTE 520
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 1/125 (0%)
Query: 81 EGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK 140
E Q ++ K+ +L L + ++ +K++N + K Y P++ LY MI +L
Sbjct: 839 EELQDMNFKISKSTVLLLLDAFAKAGDVFEVMKIYNGM-KAAGYLPNMHLYRSMISLLCH 897
Query: 141 NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT 200
+ + E + E++ G PD + ++ +Y G D+ + Y ++ +G P + T
Sbjct: 898 HNRFRDVELMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDT 957
Query: 201 FTILI 205
+ LI
Sbjct: 958 YNTLI 962
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 137 MLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP 196
+LG+ +Q ++AEE+F EG +V+ M+GVY + G D A + +TM G P
Sbjct: 197 VLGRARQDSIAEEVFLRFAGEG--ATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDP 254
Query: 197 HKLTFTILIRNLENAG 212
++F LI +G
Sbjct: 255 DLVSFNTLINARSKSG 270
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+K + Y+ MI M GK ++ +A L+ E++ G PD YT MI ++ I +A
Sbjct: 394 FKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAG 453
Query: 184 ETYETMKASGCTPHKLTFTILI---------RNLENAGEEELVAAVRRDCIQYV 228
+ E M +G P + F+ LI + EN + + + V+ D + Y+
Sbjct: 454 KVLEDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYL 507
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 126 PDLSLYSDMILMLGKNKQIA--MAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
PDL ++ +I K+ +A +A +L E+++ GL PD Y +I Q ++ A+
Sbjct: 254 PDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAV 313
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
+E M AS C P T+ ++ G+ E + R+ ++ P+
Sbjct: 314 TVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPD 362
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E +PD Y+ +I+M ++ + L E+ K GL P + Y ++ + + +
Sbjct: 948 EAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELRE 1007
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRRDCIQ 226
+A + +E M++ ++ + ++++ NAG E L+A ++ D I+
Sbjct: 1008 QADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIE 1057
>gi|15237375|ref|NP_199422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171880|sp|Q9FNL2.1|PP418_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46100
gi|9757730|dbj|BAB08255.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|332007954|gb|AED95337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 472
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 4/125 (3%)
Query: 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAE-ELFCELKK 156
L L +N+L+LA K + +R E+ P ++ + +I L +N A ++F E+ K
Sbjct: 127 VLAILVEENQLNLAFKFYKNMR-EIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPK 185
Query: 157 EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
G DPD+ Y +I + G ID+A + + M C P +T+T LI L G + +
Sbjct: 186 RGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGL--CGSKNV 243
Query: 217 VAAVR 221
A+R
Sbjct: 244 DEAMR 248
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Query: 99 LTELRRQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
++ L R +D A K+F V K+ P + Y+ +I L +K + A E+K +
Sbjct: 199 ISGLCRFGRIDEAKKLFTEMVEKDC--APTVVTYTSLINGLCGSKNVDEAMRYLEEMKSK 256
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
G++P+ Y+ ++ + G +AME +E M A GC P+ +T+T LI L
Sbjct: 257 GIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGL 307
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Query: 103 RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
R +D LK+F + K PD Y +I L + +I A++LF E+ ++ P
Sbjct: 168 RNDGTVDAGLKIFLEMPKR-GCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPT 226
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
YT +I +D+AM E MK+ G P+ T++ L+ L G
Sbjct: 227 VVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDG 276
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ +I L K ++I A EL + +GL PD +Y ++I + + +A
Sbjct: 294 RPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAAN 353
Query: 185 TYETMKASGCTPHKLTFTILIR 206
+ M G TP++LT+ I ++
Sbjct: 354 FLDEMILGGITPNRLTWNIHVK 375
>gi|15219388|ref|NP_178067.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75200795|sp|Q9SAK0.1|PP132_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g79490, mitochondrial; AltName: Full=Protein EMBRYO
DEFECTIVE 2217; Flags: Precursor
gi|4835759|gb|AAD30226.1|AC007202_8 T8K14.9 [Arabidopsis thaliana]
gi|332198129|gb|AEE36250.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 836
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 69/130 (53%), Gaps = 4/130 (3%)
Query: 81 EGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK 140
+GF R + L+D+ + +LD AL++++ ++K ++P+ LY+ +I K
Sbjct: 375 QGFGHRPSATMFVSLIDSYA---KAGKLDTALRLWDEMKKS-GFRPNFGLYTMIIESHAK 430
Query: 141 NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT 200
+ ++ +A +F +++K G P Y+ ++ ++ G +D AM+ Y +M +G P +
Sbjct: 431 SGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNAGLRPGLSS 490
Query: 201 FTILIRNLEN 210
+ L+ L N
Sbjct: 491 YISLLTLLAN 500
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
Query: 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
+ L+D++ + R LD ++KV+ + ++P +++ +I K ++ A L+
Sbjct: 352 SSLVDSMGKAGR---LDTSMKVY-MEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWD 407
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
E+KK G P+ +YT +I + + G ++ AM ++ M+ +G P T++ L+ +G
Sbjct: 408 EMKKSGFRPNFGLYTMIIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSG 467
Query: 213 E 213
+
Sbjct: 468 Q 468
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 38/157 (24%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKP--------------------------- 126
+++ L+ E+D AL +F + +K+ WY P
Sbjct: 171 NMVHITQSLKIVKEVDAALSLFRWAKKQPWYLPSDECYVVLFDGLNQGRDFVGIQSLFEE 230
Query: 127 ---------DLSL--YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175
DLS Y+ +I L K +++ +A F + ++ G DT+ Y ++ ++L
Sbjct: 231 MVQDSSSHGDLSFNAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLN 290
Query: 176 VGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
G+ KA E YE+M+ + T+ ++I +L +G
Sbjct: 291 KGLPYKAFEIYESMEKTDSLLDGSTYELIIPSLAKSG 327
>gi|299473436|emb|CBN77833.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1139
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
D ALKVF+ + + P + ++ +I G+ I A ++F L + GL P+ R ++
Sbjct: 181 DQALKVFDQMSR-YGVTPSVITFNTLIDACGRAGDIDRARQVFSRLSQAGLSPNDRTFSA 239
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+I + G +D+A + M+A G P+++T++ LI AG+
Sbjct: 240 LIHSHAVQGQVDEAFSWLQEMRARGLEPNRVTYSALINACGRAGQ 284
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 47/89 (52%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P + +S +I G +++ +AE F E+ + G+ PD + +I + + G D+A++
Sbjct: 126 RPTIVTFSTLISRAGACRRVRLAERFFREMLEAGITPDVQAINSLINAFAKAGSPDQALK 185
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
++ M G TP +TF LI AG+
Sbjct: 186 VFDQMSRYGVTPSVITFNTLIDACGRAGD 214
Score = 39.7 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 47/96 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ ++ +I GK K++ + +LF E+++ G P+ + ++ L+ +D A
Sbjct: 301 EPNVVTWTTLIDACGKGKELEWSFKLFKEMRERGTVPNGVTCSALMDACLKADELDLAFA 360
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
E M G P ++T+T L+ G+ + V
Sbjct: 361 VLEHMLDVGIEPTEVTYTSLLTQCARLGQADRAGIV 396
Score = 38.9 bits (89), Expect = 2.1, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 43/93 (46%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E PD+ + +I K A ++F ++ + G+ P + +I + G ID
Sbjct: 157 EAGITPDVQAINSLINAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLIDACGRAGDID 216
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+A + + + +G +P+ TF+ LI + G+
Sbjct: 217 RARQVFSRLSQAGLSPNDRTFSALIHSHAVQGQ 249
>gi|413934890|gb|AFW69441.1| hypothetical protein ZEAMMB73_914225 [Zea mays]
Length = 504
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+EV + D+ +YS +I GK Q+A A +F +++ EG+ PD + +I + +VG +
Sbjct: 220 QEVGVELDVKIYSGLIDTFGKYGQLADARRMFDKMRAEGVRPDISTWNALIQWHCRVGNM 279
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+A+ + +M+ G P F ++I L G+
Sbjct: 280 KRALRFFTSMQEEGMYPDPKIFVMIISRLGEQGK 313
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++P+L + + +I G + A +F +K G+ PD YT ++ +++ +K
Sbjct: 399 FEPNLVMLNSLINAFGTAGRHLEALAVFQHIKDSGMSPDVVTYTTLMKTFMRAKKFEKVS 458
Query: 184 ETYETMKASGCTPHK 198
E Y M+ +GC P +
Sbjct: 459 EVYREMERAGCAPDR 473
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 42/80 (52%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D + YS ++ + N A +L E+++ G++ D ++Y+ +I + + G + A +
Sbjct: 192 DTAGYSMLVRLYRDNGMWKKATDLVMEMQEVGVELDVKIYSGLIDTFGKYGQLADARRMF 251
Query: 187 ETMKASGCTPHKLTFTILIR 206
+ M+A G P T+ LI+
Sbjct: 252 DKMRAEGVRPDISTWNALIQ 271
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 145 AMAEELFCE--------LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP 196
A A++ CE +++EG +P+ + +I + G +A+ ++ +K SG +P
Sbjct: 377 AYAQQGLCEQTVNVLQLMEEEGFEPNLVMLNSLINAFGTAGRHLEALAVFQHIKDSGMSP 436
Query: 197 HKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEV 238
+T+T L++ A + E V+ V R+ + P+R E+
Sbjct: 437 DVVTYTTLMKTFMRAKKFEKVSEVYREMERAGCAPDRKAREM 478
>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
Length = 862
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
Query: 99 LTELRRQNELDLALKVF-NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
L L + N +D A K+F + K++ +P++ ++ MI +L K + A +LF +
Sbjct: 696 LNGLCKTNCVDEAFKIFQSLCSKDL--RPNIITFTIMIDVLFKGGRKKDAMDLFASIPSH 753
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
GL P+ Y M+ +Q G++D+ + M+ SGCTP + +IR+L GE
Sbjct: 754 GLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVMLNAIIRSLLGRGE 809
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 6/119 (5%)
Query: 95 LLDTLTELRRQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
LLD L + + E A K+F +RK + KP++++Y ++ IA +L
Sbjct: 380 LLDYLCKNGKCTE---ARKIFYCMIRKGI--KPNVTIYGILLHGYAARGAIADLTDLLDL 434
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ G+ P+ ++ ++ Y + MID+AM + M G +P +T+ ILI L G
Sbjct: 435 MVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLG 493
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 80/175 (45%), Gaps = 8/175 (4%)
Query: 45 LRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELR- 103
L D+ ++ R V+S + H LA + + + + LK DL+ T LR
Sbjct: 571 LIDSMERVGVRPNVISYNTLIGGHC--LAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRG 628
Query: 104 --RQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD 160
+ +D A +F +RK V P YS ++ L ++ + A+EL+ + K G
Sbjct: 629 YCKTGRIDNAYCLFREMLRKGV--TPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQ 686
Query: 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
D Y ++ + +D+A + ++++ + P+ +TFTI+I L G ++
Sbjct: 687 WDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKK 741
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+ +++ ++ K I A +F + + GL PD Y +I ++G +D A+
Sbjct: 442 PNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLK 501
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ M G TP+ + F L+ L
Sbjct: 502 FNQMINDGVTPNSVVFNSLVYGL 524
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 121 EVW---YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177
E+W +P++ ++ ++ L Q+ +A+ L +++ G+ P+ Y +IG + G
Sbjct: 539 EMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAG 598
Query: 178 MIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
D+A + + M + G P +++ L+R G
Sbjct: 599 RTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTG 633
Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ +I L K + + A+ + + + + PD + Y +I YL G + +
Sbjct: 301 KPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVR 360
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
E M A G P +T+++L+ L G+
Sbjct: 361 RLEEMYARGLDPDVVTYSLLLDYLCKNGK 389
>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Cucumis sativus]
gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Cucumis sativus]
Length = 701
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L + +LD +++++N ++K PDL +S MI L K AE++F E+ + G
Sbjct: 262 INGLCKLGKLDESMEMWNRMKKNE-KSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESG 320
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
L PD R Y M+ + G ++K E + M + C + +++ +LI+ L
Sbjct: 321 LSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCC-NIVSYNMLIQGL 369
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 86/189 (45%), Gaps = 18/189 (9%)
Query: 55 RSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICR---LLKADLLDTLTELRRQNELDLA 111
S V +S V A KL ++ S L E +S+ C + +++ L + R ++ L+
Sbjct: 463 NSHVFNSLINGYVRAFKLEEAISVLRE-MKSKDCAPTVVSYNTIINGLCKAERFSDAYLS 521
Query: 112 LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIG 171
LK E KPD+ YS +I L + +++ MA L+ + + L PD +++ +I
Sbjct: 522 LKEM----LEEGLKPDMITYSLLIDGLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIH 577
Query: 172 VYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFP 231
+D A+E + M+ C P +T ++ L AG DC++ ++
Sbjct: 578 GLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLYKAG----------DCVEALKIW 627
Query: 232 ERFLEEVYQ 240
+R LE Q
Sbjct: 628 DRILEAGLQ 636
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
PD+ Y +I L K+ + A ELF E+ G++PD Y +I +L+ G KA E
Sbjct: 181 NPDILSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANE 240
Query: 185 TYE-TMKASGCTPHKLTFTILIRNLENAGE 213
++ + S P T+ I+I L G+
Sbjct: 241 IWKRLLTESSVYPSVETYNIMINGLCKLGK 270
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+L Y+ +I + K +Q + L + + GL+PD Y +I + G + A+E
Sbjct: 147 PNLQTYNILIKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAKSGNLLDAVEL 206
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
++ M G P + + ILI G+
Sbjct: 207 FDEMSVRGVNPDVMCYNILIDGFLRKGD 234
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D YS M+ L K + A EL ++KK ++ V+ +I Y++ +++A+
Sbjct: 428 DTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVL 487
Query: 187 ETMKASGCTPHKLTFTILIRNL 208
MK+ C P +++ +I L
Sbjct: 488 REMKSKDCAPTVVSYNTIINGL 509
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
K D + Y +I L KN + A + E + EG D DT Y+ M+ + GM+++A+E
Sbjct: 391 KADSTTYGLLINGLCKNGYLNKALRILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVE 450
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE-EELVAAVR----RDCIQYV 228
MK + + F LI A + EE ++ +R +DC V
Sbjct: 451 LIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPTV 499
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 73/132 (55%), Gaps = 10/132 (7%)
Query: 79 LEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILM 137
LEEG + + + + L+D L R ++D+AL +++ + K + KPDL +++ +I
Sbjct: 526 LEEGLKPDM--ITYSLLIDGLC---RGEKVDMALNLWHQCINKRL--KPDLQMHNIIIHG 578
Query: 138 LGKNKQIAMAEELFCELKKEGLDPDTRVY-TEMIGVYLQVGMIDKAMETYETMKASGCTP 196
L +++ +A E+F ++++ PD + T M G+Y + G +A++ ++ + +G P
Sbjct: 579 LCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLY-KAGDCVEALKIWDRILEAGLQP 637
Query: 197 HKLTFTILIRNL 208
+++ I + L
Sbjct: 638 DIISYNITFKGL 649
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 108 LDLALKVFNFVR-KEVWYK--------PDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+D L+ +FV+ E+W + P + Y+ MI L K ++ + E++ +KK
Sbjct: 226 IDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNE 285
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
PD ++ MI + G + A + ++ M SG +P T+ ++ L G+
Sbjct: 286 KSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGK 340
>gi|356523400|ref|XP_003530328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Glycine max]
Length = 664
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L L A+ V + K+ + +P+++ YS ++ K + A E++ ++ G
Sbjct: 359 LNGLCCSGNLAEAVDVCGRMEKDCFCRPNVTTYSTLVHGFVKAGDLQGASEVWNKMVNCG 418
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ P+ VYT M+ V + M D+A + M GC P +TF I+ L G
Sbjct: 419 VRPNVVVYTSMVDVLCKNSMFDQAYRLIDNMATDGCPPTVVTFNTFIKGLCCGG 472
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 4/117 (3%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMI-LMLGKN-KQIAMAEELFCELKKEGLDPDTRVY 166
D ALK+F + KE KP + +Y+ ++ +LG++ + M ++ ++ EG++P+ Y
Sbjct: 125 DRALKMF-YRIKEFGCKPTVKIYNHLLDALLGESGNKFHMIGAVYENMRGEGMEPNVFTY 183
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL-ENAGEEELVAAVRR 222
++ + G +D A + M GC P +++T ++ + E+ EE RR
Sbjct: 184 NVLLKALCKNGKLDGACKLLVEMSKRGCVPDGVSYTTVVAAMCEDGRVEEAREVARR 240
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
LRR+ + AL+ F ++ + +K Y MI LG+N ++ + ++K E +
Sbjct: 47 LRREPNVLYALQHFQYLTNTLAFKHTPLTYHVMIEKLGRNSELDALHYILHQMKIERIPC 106
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL--ENAGEEELVAA 219
+ ++ Y G+ D+A++ + +K GC P + L+ L E+ + ++ A
Sbjct: 107 SQDSFICVLNSYKNSGLGDRALKMFYRIKEFGCKPTVKIYNHLLDALLGESGNKFHMIGA 166
Query: 220 V 220
V
Sbjct: 167 V 167
>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
Length = 819
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 104 RQNELDLALKVFNFVRK--EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
++ +LD+AL +F+ K EV K + YS +I K ++ A+ LF E+ GL P
Sbjct: 402 KRGKLDVAL---HFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKP 458
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
+ +YT +I Y + G + A Y M G +P+ TFT LI L +A
Sbjct: 459 NVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHA 508
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%)
Query: 86 RICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIA 145
R C D L + QN +L V + + P + S ++ L + +Q
Sbjct: 138 RKCNFSTTLGFDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFR 197
Query: 146 MAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
MA LF E+ GL PD VYT ++ ++ +A E M++SGC T+ + I
Sbjct: 198 MALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFI 257
Query: 206 RNL 208
R L
Sbjct: 258 RGL 260
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E + P + S+++ L K I A +L ++KK G+ P VY +I + G +D
Sbjct: 313 EFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLD 372
Query: 181 KAMETYETMKASGCTPHKLTFTILI 205
+A + M G P+ +T++ILI
Sbjct: 373 EAESLFNNMGHKGLFPNDVTYSILI 397
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
LR++ + A + N V+K P L +Y+ +I + K+ ++ AE LF + +GL P
Sbjct: 330 LRKKGNIGSAFDLVNKVKK-FGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFP 388
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ Y+ +I + + G +D A+ M G ++ LI
Sbjct: 389 NDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLI 432
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 42/81 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ +Y+ +I K ++ A L+ E+ +G+ P+T +T +I + +A +
Sbjct: 457 KPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANK 516
Query: 185 TYETMKASGCTPHKLTFTILI 205
+ M P+++T+ +LI
Sbjct: 517 LFGEMVEWNVIPNEVTYNVLI 537
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+ Y+ +I K A EL E+ ++GL PDT Y +I G + +A E
Sbjct: 528 PNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREF 587
Query: 186 YETMKA--------SGCTPHKLTFTILIRNLENAG 212
++ GC P+ +T+T LI L G
Sbjct: 588 MNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIG 622
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
PD YS +I + + A +L+ + G++PDT Y +I G + KA E
Sbjct: 709 SPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFE 768
Query: 185 TYETMKASGCTPHKLTFTILIR 206
+ M G P++ T+ LI
Sbjct: 769 LRDDMMRRGVKPNRATYNSLIH 790
>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Glycine max]
Length = 794
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 5/166 (3%)
Query: 58 VLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADL--LDTLTELRRQNEL-DLALKV 114
+++ AI V+ K+ +K+ Q C L DL +TL R L + AL +
Sbjct: 214 LITYNAILNVYG-KMGMPWAKIIALVQDMKCHGLAPDLCTYNTLISCCRAGSLYEEALDL 272
Query: 115 FNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYL 174
F + K ++PD Y+ ++ + GK+++ A E+ +++ P Y ++ Y+
Sbjct: 273 FEEI-KVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYV 331
Query: 175 QVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+ G+++ A+ M G P T+T L+ NAG+EEL V
Sbjct: 332 RGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEV 377
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Query: 91 LKADLLDTLTELRRQNELDLALKVFNFVR--KEVWYKPDLSLYSDMILMLGKNKQIAMAE 148
L D+L + L N+ DLAL +F+F+R + + S+ + ++ +LGK +++ A
Sbjct: 105 LSWDILGIIKGLGFNNKFDLALSLFDFIRTRNDRVSLLNGSVIAVIVSILGKTGRVSRAA 164
Query: 149 ELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
L L+ +G + D YT +I Y A++ + MK GC P +T+ ++
Sbjct: 165 SLLHNLEADGFEVDVYGYTSLITAYANNKKYRDALKVFGKMKEVGCEPTLITYNAILN 222
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 2/115 (1%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
+LA++VF +RK V KP++ ++ +I M G + ++F E+K PD +
Sbjct: 372 ELAMEVFEEMRK-VGCKPNICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNT 430
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE-EELVAAVRR 222
++ V+ Q GM + +E MK S P + TF LI G ++ +AA +R
Sbjct: 431 LLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKR 485
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LLD + RR E A++V + ++P + Y+ ++ + + A L ++
Sbjct: 291 LLDVYGKSRRPKE---AMEVLKQMESNS-FRPSVVTYNSLVSAYVRGGLLEDALVLKRKM 346
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE- 213
+G+ PD YT ++ ++ G + AME +E M+ GC P+ TF LI+ + G+
Sbjct: 347 VDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKF 406
Query: 214 EELV 217
EE+V
Sbjct: 407 EEMV 410
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 43/87 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ ++ ++ + G+N + +F E+K+ P+ + +I Y + G D+AM
Sbjct: 423 PDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAA 482
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
Y+ M +G +P T+ ++ L G
Sbjct: 483 YKRMLEAGVSPDLSTYNAVLATLARGG 509
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 128 LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYE 187
L+ Y+ ++ M + + +E++F E+ +G++PD Y +I Y + M+D+A E
Sbjct: 635 LTSYNSLMYMYSRTENFHKSEQIFREILDKGIEPDVISYNIVIYAYCRNDMMDEAKRIIE 694
Query: 188 TMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYV 228
MK P +T+ I A + V A+ D I+Y+
Sbjct: 695 EMKVPAPVPDVVTYNTFIAAY--AADSMFVEAI--DVIRYM 731
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 53/109 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ ++ + +A E+F E++K G P+ + +I +Y G ++ ++
Sbjct: 352 KPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMVK 411
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPER 233
++ +K C+P +T+ L+ G + V+ V + + PER
Sbjct: 412 VFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPER 460
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 56/124 (45%)
Query: 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKK 156
+TL + QN +D + K + P+ ++ +I G+ A + + +
Sbjct: 429 NTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLE 488
Query: 157 EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
G+ PD Y ++ + G+ +++ + MK GC P+++T++ L+ N E E
Sbjct: 489 AGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGREVER 548
Query: 217 VAAV 220
+ A+
Sbjct: 549 MNAL 552
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 17/137 (12%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL Y+ +I A +LF E+K G PD Y ++ VY + +AME
Sbjct: 248 PDLCTYNTLISCCRAGSLYEEALDLFEEIKVAGFRPDAVTYNALLDVYGKSRRPKEAMEV 307
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG--EEELV-------AAVRRDCIQYVEFPERFLE 236
+ M+++ P +T+ L+ G E+ LV ++ D Y F+
Sbjct: 308 LKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVN 367
Query: 237 --------EVYQKHRKT 245
EV+++ RK
Sbjct: 368 AGKEELAMEVFEEMRKV 384
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ Y+ +I +N + A+ + E+K PD Y I Y M +A++
Sbjct: 667 EPDVISYNIVIYAYCRNDMMDEAKRIIEEMKVPAPVPDVVTYNTFIAAYAADSMFVEAID 726
Query: 185 TYETMKASGCTPHKLTFTILI 205
M GC P+ T+ ++
Sbjct: 727 VIRYMIKQGCKPNHNTYNSIV 747
>gi|225464138|ref|XP_002265372.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100
[Vitis vinifera]
gi|296087974|emb|CBI35257.3| unnamed protein product [Vitis vinifera]
Length = 503
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 4/118 (3%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNK-QIAMAEELFCELKKEGLDPDT 163
+N+L LAL+ + ++R E+ P ++ + +I L KN + A +F E+ G PD+
Sbjct: 133 ENQLKLALRFYRYMR-EMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPDS 191
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
Y +I ++G I +A E ++ M+ C+P +T+T LI L ++L +A+R
Sbjct: 192 YTYGTLINGLCRLGKIGEAKELFKEMETKACSPTVVTYTSLIHGL--CQSKDLDSAIR 247
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Query: 103 RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
+ +D AL++F + PD Y +I L + +I A+ELF E++ + P
Sbjct: 167 KNSGTMDAALRIFREMPNR-GCPPDSYTYGTLINGLCRLGKIGEAKELFKEMETKACSPT 225
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
YT +I Q +D A+ E M + G P+ T++ L+
Sbjct: 226 VVTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLM 268
Score = 43.5 bits (101), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 44/81 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ YS ++ L K ++ A E+ +K +GL PD +Y ++I + + +A
Sbjct: 294 PNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANF 353
Query: 186 YETMKASGCTPHKLTFTILIR 206
+ M G +P++LT+++ +R
Sbjct: 354 LDEMVLGGISPNRLTWSLHVR 374
>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900 [Vitis vinifera]
Length = 900
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 104 RQNELDLALKVFNFVRK--EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
++ +LD+AL +F+ K EV K + YS +I K ++ A+ LF E+ GL P
Sbjct: 402 KRGKLDVAL---HFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKP 458
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
+ +YT +I Y + G + A Y M G +P+ TFT LI L +A
Sbjct: 459 NVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHA 508
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
DL YS +I + + + +L ++ +GL PD +YT MI + G + A +
Sbjct: 634 DLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLW 693
Query: 187 ETMKASGCTPHKLTFTILIRNLENAG 212
+ M + GC P+ +T+T LI L G
Sbjct: 694 DIMVSEGCLPNVVTYTALINGLCKIG 719
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD LY+ MI K + MA L+ + EG P+ YT +I ++G++DKA
Sbjct: 667 RPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAEL 726
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
M AS P++ T+ + L + G E
Sbjct: 727 LCREMLASNSLPNQNTYACFLDYLTSEGNIE 757
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%)
Query: 86 RICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIA 145
R C D L + QN +L V + + P + S ++ L + +Q
Sbjct: 138 RKCNFSTTLGFDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFR 197
Query: 146 MAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
MA LF E+ GL PD VYT ++ ++ +A E M++SGC T+ + I
Sbjct: 198 MALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFI 257
Query: 206 RNL 208
R L
Sbjct: 258 RGL 260
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E + P + S+++ L K I A +L ++KK G+ P VY +I + G +D
Sbjct: 313 EFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLD 372
Query: 181 KAMETYETMKASGCTPHKLTFTILI 205
+A + M G P+ +T++ILI
Sbjct: 373 EAESLFNNMGHKGLFPNDVTYSILI 397
Score = 40.0 bits (92), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
LR++ + A + N V+K P L +Y+ +I + K+ ++ AE LF + +GL P
Sbjct: 330 LRKKGNIGSAFDLVNKVKK-FGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFP 388
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ Y+ +I + + G +D A+ M G ++ LI
Sbjct: 389 NDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLI 432
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 42/81 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ +Y+ +I K ++ A L+ E+ +G+ P+T +T +I + +A +
Sbjct: 457 KPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANK 516
Query: 185 TYETMKASGCTPHKLTFTILI 205
+ M P+++T+ +LI
Sbjct: 517 LFGEMVEWNVIPNEVTYNVLI 537
Score = 37.4 bits (85), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
PD YS +I + + A +L+ + G++PDT Y +I G + KA E
Sbjct: 806 SPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFE 865
Query: 185 TYETMKASGCTPHKLTFTILI 205
+ M G P++ T+ LI
Sbjct: 866 LRDDMMRRGVKPNRATYNSLI 886
>gi|302763321|ref|XP_002965082.1| hypothetical protein SELMODRAFT_83088 [Selaginella moellendorffii]
gi|300167315|gb|EFJ33920.1| hypothetical protein SELMODRAFT_83088 [Selaginella moellendorffii]
Length = 731
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 14/152 (9%)
Query: 61 SEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRK 120
++A+ AM+ +S E F S I L K LL+ L +V V K
Sbjct: 455 TDAVTVFEAME-KDGASPNEASFNSLIQLLCKGRLLEILQ------------RVLVLV-K 500
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
+KP L+ S ++ G ++ AE +F E+ G++ D Y+ ++ Y + G
Sbjct: 501 AAGFKPSLASCSSVVSFYGDMGRVREAERVFKEMLASGVEADVICYSALLNAYAEAGFAR 560
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+A +T +++KA+G P + +T +++ N G
Sbjct: 561 EAQQTLDSLKAAGFVPDTIVYTSMMKLYSNLG 592
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 86 RICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIA 145
R RL +L L+E Q + A++VF++ +++ Y+ ++ LY+ ++ LG+ +
Sbjct: 78 RAGRLESRELSRILSE---QRDWRKAIEVFSWFQRQDNYEANVFLYNILLRTLGRAAKWE 134
Query: 146 MAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
+ ++ + E+ E + P Y+ ++ V+ + GM D+A+ Y M SG P ++
Sbjct: 135 LLQKYWSEMLGERVPPTIFTYSILVDVHGRAGMKDEAIRFYRHMIESGVEPDEV 188
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 10/111 (9%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
Q LD +LK FV + Y + LYS++ L IA AE+++ E+ + L PD
Sbjct: 563 QQTLD-SLKAAGFVPDTIVYTSMMKLYSNLGL-------IAEAEKIYEEISR--LSPDVF 612
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
M+ +Y++ GM +A + + M+ +++ T++++ AG+ E
Sbjct: 613 AANTMLNLYIKSGMFTEAEQLFRAMQRGKPGLNEVACTMMLKLYREAGKIE 663
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
L D R + +I +Y++ G++ +A+E + M+ +G P + TF+ LE AG
Sbjct: 677 LITDARAFNVVIAMYVKAGLMREALEALKEMRRAGLVPSRSTFSCFEEILERAG 730
>gi|302143554|emb|CBI22115.3| unnamed protein product [Vitis vinifera]
Length = 765
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 73/140 (52%), Gaps = 4/140 (2%)
Query: 81 EGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK 140
+GF R + L+++ + +L+ AL++++ ++K ++P+ LY+ ++ K
Sbjct: 294 QGFGLRPSATMYVSLIESFV---KAGKLETALRIWDEMKK-AGFRPNYGLYTMVVESHAK 349
Query: 141 NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT 200
+ ++ A +F +++K G P Y+ ++ ++ G +D AM+ Y +M +G P T
Sbjct: 350 SGKLETAMSVFSDMEKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYNSMTNAGLRPGLST 409
Query: 201 FTILIRNLENAGEEELVAAV 220
+T L+ L N ++ A V
Sbjct: 410 YTALLTLLANKKLVDVAAKV 429
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 142 KQIAMAEEL---FCELKK---EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCT 195
+ +A AE+L FC KK G DT Y +I ++L G+ KA E YE+M+A+GC
Sbjct: 170 RDLAKAEKLEVAFCCFKKVQDSGCKIDTATYNSLITLFLNKGLPYKAFEVYESMEAAGCL 229
Query: 196 PHKLTFTILIRNLENAG 212
T+ ++I +L +G
Sbjct: 230 LDGSTYELMIPSLAKSG 246
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D S Y MI L K+ ++ A +LF E+K++ L P V+ ++ + G +D +M+ Y
Sbjct: 231 DGSTYELMIPSLAKSGRLDAAFKLFQEMKEKNLRPSFLVFASLVDSMGKAGRLDTSMKVY 290
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEE 215
M+ G P + LI + AG+ E
Sbjct: 291 MEMQGFGLRPSATMYVSLIESFVKAGKLE 319
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 92/212 (43%), Gaps = 32/212 (15%)
Query: 13 LKFHFSQMGFHQRPQISL---------PSGKKIQALTVTCGLRDANKKPMWRSRVLSSEA 63
+K + GF RP ++ +GK AL + ++ A +P + + E+
Sbjct: 287 MKVYMEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVES 346
Query: 64 IQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDT------LTELRR-QNELDLALKVFN 116
HA S KLE S + KA L T L E+ ++D A+K++N
Sbjct: 347 ----HA-----KSGKLETA-MSVFSDMEKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYN 396
Query: 117 FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176
+ +P LS Y+ ++ +L K + +A ++ E+K G D ++++ VY++
Sbjct: 397 SM-TNAGLRPGLSTYTALLTLLANKKLVDVAAKVLLEMKAMGFSVDVSA-SDVLMVYIKD 454
Query: 177 GMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
G +D A+ M +SG T +IR L
Sbjct: 455 GSVDLALRWLRFMGSSGIR----TNNFIIRQL 482
>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Cucumis sativus]
Length = 749
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD++ YS +I L K +++ +LF E+ GL PD YT +I Y G +DKA+
Sbjct: 481 PDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRL 540
Query: 186 YETMKASGCTPHKLTFTILIRNLE 209
++ M G +P +T+ +LI
Sbjct: 541 HDEMIQKGFSPDIVTYNVLINGFN 564
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y PD ++ +I A L E+ K GL P+ YT +I + G +++AM
Sbjct: 304 YVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAM 363
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAG 212
E + M+ G P+ T+T LI G
Sbjct: 364 EFLDQMRDRGLHPNGRTYTTLIDGFSQQG 392
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
P+L Y+ +I L + Q+ E+ E+ K PD + +I Y VG +A+
Sbjct: 270 NPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALV 329
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
+ M +G +P+ +T+T LI ++ AG
Sbjct: 330 LHAEMVKNGLSPNVVTYTTLINSMCKAGN 358
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 45/86 (52%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E + PD+ YS +I +N+++ A +L E+ +G+ PD Y+ +I + +
Sbjct: 441 ERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLG 500
Query: 181 KAMETYETMKASGCTPHKLTFTILIR 206
+ + ++ M + G P ++T+T LI
Sbjct: 501 EVCDLFQEMLSLGLPPDEVTYTSLIN 526
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 147 AEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
A+ + + ++G + VY +I + +VG I+KA Y+ M SG PH +T L +
Sbjct: 622 ADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAK 681
Query: 207 NLENAGEE 214
+L + G+E
Sbjct: 682 SLYHEGKE 689
>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
Length = 850
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
LR + LD LK+ PD + Y+ +++ +N + AE +F E+ +G+ P
Sbjct: 445 LRAKGVLDEMLKI--------GMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVP 496
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
D ++ +IG+ + G +D+A++ + MK +G P + +TILI
Sbjct: 497 DLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILI 540
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL +S +I +L KN + A + F ++K GL PD +YT +IG + + G++ +A++
Sbjct: 496 PDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKV 555
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ M GC +T+ ++ L
Sbjct: 556 RDEMLEQGCXLDVVTYNTILNGL 578
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ Y+ ++ L K K ++ A+ELF E+ + G+ PD +T +I Y + G ++KA+ +
Sbjct: 567 DVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLF 626
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
E M P +T+ LI E E V + D I +P
Sbjct: 627 EMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPN 672
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 108 LDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
+DLA +++ VR V + ++ + MI L KN++I + +++++G+ PD Y
Sbjct: 339 VDLAWEIYQEVVRSGV--QVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTY 396
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+I Y + G++++A E ++M G P T+ +I L G+
Sbjct: 397 NTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGK 443
>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Cucumis sativus]
Length = 749
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD++ YS +I L K +++ +LF E+ GL PD YT +I Y G +DKA+
Sbjct: 481 PDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRL 540
Query: 186 YETMKASGCTPHKLTFTILIRNLE 209
++ M G +P +T+ +LI
Sbjct: 541 HDEMIQKGFSPDIVTYNVLINGFN 564
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y PD ++ +I A L E+ K GL P+ YT +I + G +++AM
Sbjct: 304 YVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAM 363
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAG 212
E + M+ G P+ T+T LI G
Sbjct: 364 EFLDQMRDRGLHPNGRTYTTLIDGFSQQG 392
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
P+L Y+ +I L + Q+ E+ E+ K PD + +I Y VG +A+
Sbjct: 270 NPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALV 329
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
+ M +G +P+ +T+T LI ++ AG
Sbjct: 330 LHAEMVKNGLSPNVVTYTTLINSMCKAGN 358
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 45/86 (52%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E + PD+ YS +I +N+++ A +L E+ +G+ PD Y+ +I + +
Sbjct: 441 ERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLG 500
Query: 181 KAMETYETMKASGCTPHKLTFTILIR 206
+ + ++ M + G P ++T+T LI
Sbjct: 501 EVCDLFQEMLSLGLPPDEVTYTSLIN 526
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 147 AEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
A+ + + ++G + VY +I + +VG I+KA Y+ M SG PH +T L +
Sbjct: 622 ADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAK 681
Query: 207 NLENAGEE 214
+L + G+E
Sbjct: 682 SLYHEGKE 689
>gi|297738433|emb|CBI27634.3| unnamed protein product [Vitis vinifera]
Length = 355
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + DLA V + + K+ Y D+ +Y+ +I LGK +I A +LF +++ G++P
Sbjct: 228 LGKMGRADLASAVLDMLMKQGGYL-DIVMYNTLINALGKAGRIDEATKLFEQMRSSGINP 286
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTIL 204
D + +I ++ + G + A + + M +GC+P+ +T T L
Sbjct: 287 DVVTFNTLIEIHAKAGQLKAAYKFLKLMLDAGCSPNHVTDTTL 329
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 60/115 (52%), Gaps = 1/115 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+T ++ + A VF+ + ++V PD++ Y+ +I LGK + +A + L K+G
Sbjct: 190 MTAFVKKGYFNEAWGVFHEMGEKV-CPPDIATYNVIIQGLGKMGRADLASAVLDMLMKQG 248
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
D +Y +I + G ID+A + +E M++SG P +TF LI AG+
Sbjct: 249 GYLDIVMYNTLINALGKAGRIDEATKLFEQMRSSGINPDVVTFNTLIEIHAKAGQ 303
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 136 LMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCT 195
+ L K K +++A +LF G+DP Y M+ +++ G ++A + M C
Sbjct: 157 IFLAKGK-LSLACKLFEIFSNMGVDPVIYTYNSMMTAFVKKGYFNEAWGVFHEMGEKVCP 215
Query: 196 PHKLTFTILIRNLENAGEEELVAAV 220
P T+ ++I+ L G +L +AV
Sbjct: 216 PDIATYNVIIQGLGKMGRADLASAV 240
>gi|242094172|ref|XP_002437576.1| hypothetical protein SORBIDRAFT_10g029640 [Sorghum bicolor]
gi|241915799|gb|EER88943.1| hypothetical protein SORBIDRAFT_10g029640 [Sorghum bicolor]
Length = 429
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+EV + D+ +YS +I GK Q+A A +F +++ EG+ PD + +I + +VG +
Sbjct: 142 QEVGVELDVKIYSGLIDTFGKYGQLADARRVFDKMRAEGIKPDISTWNALIQWHCRVGNM 201
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+A+ + +M+ G P F ++I L G+
Sbjct: 202 KRALRFFTSMQEEGMYPDPKIFVMIISRLGEQGK 235
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++P+L + + +I G + A +F +K G+ PD YT ++ +++ +K
Sbjct: 321 FEPNLVMLNLLINAFGTAGRHLEALAVFQHIKDSGMSPDVVTYTTLMKTFMRAKKFEKVS 380
Query: 184 ETYETMKASGCTPHK 198
E Y M+ +GCTP +
Sbjct: 381 EVYREMERAGCTPDR 395
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 67/140 (47%), Gaps = 8/140 (5%)
Query: 91 LKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEEL 150
+ + L+DT + +L A +VF+ +R E KPD+S ++ +I + + A
Sbjct: 152 IYSGLIDTFG---KYGQLADARRVFDKMRAEG-IKPDISTWNALIQWHCRVGNMKRALRF 207
Query: 151 FCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210
F +++EG+ PD +++ +I + G D+ + ++ MK G + +L+
Sbjct: 208 FTSMQEEGMYPDPKIFVMIISRLGEQGKWDEIKKLFDGMKNRGFKESGAVYAVLVDIYGQ 267
Query: 211 AGE----EELVAAVRRDCIQ 226
G E +AA+R + +Q
Sbjct: 268 YGHFRDARECIAALRAENMQ 287
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D + YS ++ + N A +L E+++ G++ D ++Y+ +I + + G + A +
Sbjct: 114 DTAGYSMLVRLYRDNGMWKKAIDLVMEMQEVGVELDVKIYSGLIDTFGKYGQLADARRVF 173
Query: 187 ETMKASGCTPHKLTFTILI 205
+ M+A G P T+ LI
Sbjct: 174 DKMRAEGIKPDISTWNALI 192
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ L Q + D K+F+ + K +K ++Y+ ++ + G+ A E L+ E
Sbjct: 227 ISRLGEQGKWDEIKKLFDGM-KNRGFKESGAVYAVLVDIYGQYGHFRDARECIAALRAEN 285
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ RV+ + Y Q G+ ++ + + M+ G P+ + +LI AG
Sbjct: 286 MQLSPRVFCVLANAYAQQGLCEQTVNVLQLMEEEGFEPNLVMLNLLINAFGTAG 339
>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 499
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 56 SRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKAD------LLDTLTELRRQNELD 109
+RV+ + I + A +++KL F+ + + L+ D L+ L R +E
Sbjct: 228 TRVVYNSLIHGLGRSGRADAAAKL---FREMLSKGLQPDHVTFTSLVYGLGVAGRASE-- 282
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
A ++F R +V D++LY+ +I L K+K++ A E+F EL+++GL PD + +
Sbjct: 283 -ARRIFQEAR-DVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNAL 340
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ + G I A MK +GCTP + LI L +G E
Sbjct: 341 MDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVE 386
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
ALKVF K +P++ Y+ MI LGK+ + A LF E+ EGL VY +I
Sbjct: 178 ALKVF-LDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLI 236
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ G D A + + M + G P +TFT L+ L AG
Sbjct: 237 HGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAG 278
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL V+ V + +PD ++ ++ K K++ +LF E++ + P+ Y+ +I
Sbjct: 108 ALAVYR-VMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILI 166
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ G ++KA++ + MK+ GC P+ T+T +I L +G
Sbjct: 167 DAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSG 208
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 48/98 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ YS +I + K + A ++F ++K G P+ YT MI + G +DKA
Sbjct: 157 PNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFL 216
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
+E M + G ++ + LI L +G + A + R+
Sbjct: 217 FEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFRE 254
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+++Y+ +I L K+ ++ A +L E++ G +PD Y +I + G I+ A+
Sbjct: 367 PDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRL 426
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+E + A G + +T+ ++ L AG
Sbjct: 427 FEEISAKG-FANTVTYNTILNGLCMAG 452
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 4/111 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+DTL + +R LD A ++F + +E PD+ ++ ++ L K+ +I A L ++
Sbjct: 305 LIDTLCKSKR---LDEAWEIFGEL-EEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDM 360
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
K+ G PD VY +I + G +++A + M++ G P +T+ LI
Sbjct: 361 KRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLI 411
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 39/77 (50%)
Query: 129 SLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYET 188
S Y+ +I K A ++ + + GL PDT + ++ + + +D + +E
Sbjct: 90 SAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEE 149
Query: 189 MKASGCTPHKLTFTILI 205
M+ C+P+ +T++ILI
Sbjct: 150 MQNQNCSPNVITYSILI 166
Score = 37.0 bits (84), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 1/125 (0%)
Query: 84 QSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ 143
+SR CR + L + +D A +F + E + +Y+ +I LG++ +
Sbjct: 186 KSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRV-VYNSLIHGLGRSGR 244
Query: 144 IAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTI 203
A +LF E+ +GL PD +T ++ G +A ++ + GC + +
Sbjct: 245 ADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNV 304
Query: 204 LIRNL 208
LI L
Sbjct: 305 LIDTL 309
>gi|255557625|ref|XP_002519842.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540888|gb|EEF42446.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 677
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 11/132 (8%)
Query: 98 TLTELRRQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKK 156
T+ LR + +L K+ N V E+ + D YS +I + + MA E F + K
Sbjct: 203 TMKSLRFGRQFELIDKLANEMVSNEI--ELDNITYSTIITCAKRCNRFDMALEWFERMYK 260
Query: 157 EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
GL PD Y+ ++ VY ++G +++ + YE ASG P +TF++L + AG+
Sbjct: 261 TGLMPDEVTYSAILDVYAKLGRVEEVLSLYERGVASGWKPDPITFSVLAKMFGEAGD--- 317
Query: 217 VAAVRRDCIQYV 228
D I+YV
Sbjct: 318 -----YDGIRYV 324
>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 586
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L +++ LD A+ + + PD+ +Y+ +I + + ++ A ++F L +G
Sbjct: 425 LDYLCKKSHLDEAMALLKTIEGSNM-DPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKG 483
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
L P+ R YT MI + G++D+A + + M +GC+P T+ + + L
Sbjct: 484 LRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGL 533
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL+ Y ++ L K + A L ++ +DPD ++YT +I + G ++ A +
Sbjct: 416 PDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDI 475
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ + + G P+ T+TI+I L G
Sbjct: 476 FSNLSSKGLRPNVRTYTIMINGLCRRG 502
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
N L A V + K + ++PD + ++ +I L +I A LF ++ EG P+
Sbjct: 118 NRLGFAFSVLAKILK-LGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVT 176
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
Y +I +VG + A+ +M+ C P + +T +I +L
Sbjct: 177 YGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSL 219
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 2/104 (1%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
Q+E+D A+KVF+ + Y P++ Y+ +I K +++ A LF E+ ++ L P+T
Sbjct: 327 QSEMDEAVKVFDTMVHN-GYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTV 385
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
Y ++ VG + A+ + M A G P T+ IL+ L
Sbjct: 386 TYNTLMHX-CHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYL 428
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 1/122 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL +F+ + E ++P++ Y +I L K A L +++ PD VYT +I
Sbjct: 158 ALHLFDKMIGE-GFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSII 216
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEF 230
+ + +A + M G +P T+T LI +L N E + V + I
Sbjct: 217 DSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIM 276
Query: 231 PE 232
P+
Sbjct: 277 PD 278
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 44/81 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ ++S ++ L K +I A ++ + G++P+ Y ++ + +D+A++
Sbjct: 277 PDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKV 336
Query: 186 YETMKASGCTPHKLTFTILIR 206
++TM +G P+ +++ LI
Sbjct: 337 FDTMVHNGYAPNVISYNTLIN 357
>gi|297843042|ref|XP_002889402.1| hypothetical protein ARALYDRAFT_470202 [Arabidopsis lyrata subsp.
lyrata]
gi|297335244|gb|EFH65661.1| hypothetical protein ARALYDRAFT_470202 [Arabidopsis lyrata subsp.
lyrata]
Length = 490
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ +I + K+++I A +L ++++E PD YT +IG +G DKA E
Sbjct: 242 KPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEDETPDVITYTTIIGGLGLIGQPDKARE 301
Query: 185 TYETMKASGCTPHKLTFTILIRN 207
+ MK GC P + IRN
Sbjct: 302 VLKEMKEYGCYPDVAAYNAAIRN 324
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++PDL ++ ++L K AE F E+K +GL PD Y +I VY + I+KA
Sbjct: 209 FQPDLQTFN---ILLSGWKSSEEAEAFFEEMKGKGLKPDVVTYNSLIDVYCKDREIEKAY 265
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
+ + M+ TP +T+T +I L G+ + V ++ +Y +P+
Sbjct: 266 KLIDKMREEDETPDVITYTTIIGGLGLIGQPDKAREVLKEMKEYGCYPD 314
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE PD++ Y+ I +++ A++L E+ K+GL P+ Y V +
Sbjct: 307 KEYGCYPDVAAYNAAIRNYCIARRLGDADKLVDEMVKKGLSPNATTYNLFFRVLSLANDL 366
Query: 180 DKAMETYETMKASGCTPHKLTFTILIR 206
++ E YE M +GC P+ + LI+
Sbjct: 367 GRSWELYERMLGNGCLPNTQSCMFLIK 393
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ E++ A K+ + +R+E PD+ Y+ +I LG Q A E+ E+K+ G PD
Sbjct: 257 KDREIEKAYKLIDKMREED-ETPDVITYTTIIGGLGLIGQPDKAREVLKEMKEYGCYPDV 315
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
Y I Y + A + + M G +P+ T+ + R L A +
Sbjct: 316 AAYNAAIRNYCIARRLGDADKLVDEMVKKGLSPNATTYNLFFRVLSLAND 365
>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+Q LD L +F +++ + KPDL +Y+ +I + +++++ A+E+ L EGL PD
Sbjct: 262 KQGNLDEMLVLFQEMQRRLV-KPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDV 320
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN 207
YT ++ + G I +A+ + M+ GC P ++ +L++
Sbjct: 321 HTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQG 364
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ + ++ +I ++F + +GL PD Y+ I Y +V ID+AME
Sbjct: 143 PDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMEL 202
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
++ M G P+ +T+ LI+ L A
Sbjct: 203 FDEMSHRGVVPNAVTYNTLIKALCQA 228
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
Q ++D K+F+ + + KPD+ YS I K ++I A ELF E+ G+ P+
Sbjct: 158 QGKIDKVRKIFHLMVSK-GLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAV 216
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
Y +I Q A + M A G +P L ++ L+ G
Sbjct: 217 TYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQGN 265
>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
Length = 735
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 19/144 (13%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ +S +I K ++ AEEL E+ + G+ PDT YT +I + + +DKA
Sbjct: 315 PDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHM 374
Query: 186 YETMKASGCTPHKLTFTILIR-----NLENAGEEEL----VAAVRRDCIQYVEFPERFLE 236
+ M + GC P+ TF ILI NL + G E + V D + Y + F E
Sbjct: 375 LDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 434
Query: 237 --------EVYQK--HRKTQVDLV 250
E++Q+ R+ + D+V
Sbjct: 435 LGKLEVAKELFQEMVSRRVRPDIV 458
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 10/133 (7%)
Query: 80 EEGFQSRICRLLKAD------LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSD 133
+E FQ + R ++ D LLD L + E + AL++F + K + D+ +Y+
Sbjct: 442 KELFQEMVSRRVRPDIVSYKILLDGLCD---NGEPEKALEIFEKIEKS-KMELDIGIYNI 497
Query: 134 MILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG 193
+I + ++ A +LFC L +G+ PD + Y MIG + G + +A + M+ G
Sbjct: 498 IIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDG 557
Query: 194 CTPHKLTFTILIR 206
+P+ T+ ILIR
Sbjct: 558 HSPNGCTYNILIR 570
>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Vitis vinifera]
Length = 746
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
LR + LD LK+ PD + Y+ +++ +N + AE +F E+ +G+ P
Sbjct: 341 LRAKGVLDEMLKI--------GMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVP 392
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
D ++ +IG+ + G +D+A++ + MK +G P + +TILI
Sbjct: 393 DLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILI 436
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL +S +I +L KN + A + F ++K GL PD +YT +IG + + G++ +A++
Sbjct: 392 PDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKV 451
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ M GC +T+ ++ L
Sbjct: 452 RDEMLEQGCVLDVVTYNTILNGL 474
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ Y+ ++ L K K ++ A+ELF E+ + G+ PD +T +I Y + G ++KA+ +
Sbjct: 463 DVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLF 522
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
E M P +T+ LI E E V + D I +P
Sbjct: 523 EMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPN 568
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 108 LDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
+DLA +++ VR V + ++ + MI L KN++I + +++++G+ PD Y
Sbjct: 235 VDLAWEIYQEVVRSGV--QVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTY 292
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+I Y + G++++A E ++M G P T+ +I L G+
Sbjct: 293 NTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGK 339
>gi|357165906|ref|XP_003580534.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
mitochondrial-like [Brachypodium distachyon]
Length = 775
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R +LD ++++ +R+ +P LY+ ++ ++ ++ +A +LF +++K G P
Sbjct: 334 LVRAGKLDAGMELWEEMRRG-GLRPSFGLYTMVVEANARSGRLDVAAKLFGDMEKSGFFP 392
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
Y ++ ++ G +D AM Y +M +G P TFT L+ L N +L A V
Sbjct: 393 TPATYACLVEMHASAGQVDIAMRMYHSMANAGTRPGLSTFTALLTMLANKRLLDLAAKV 451
>gi|22128587|gb|AAM52339.1| fertility restorer [Petunia x hybrida]
Length = 592
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
++ +Y+ +I L KN ++ A F +L GL PD YT MI Y Q G++D+A +
Sbjct: 457 NIQIYTAVINGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDML 516
Query: 187 ETMKASGCTPHKLTFTILIRNL 208
M+ +GC P T+ +++R
Sbjct: 517 RKMEDNGCLPDNRTYNVIVRGF 538
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 143 QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFT 202
Q+ A +F + +G++PD YT +I Y++ +DKAM+ + + +G P +T +
Sbjct: 333 QMGRARRIFDSMIDKGIEPDIISYTALINGYVEKKKMDKAMQLFREISQNGLKPSIVTCS 392
Query: 203 ILIRNLENAGEEE 215
+L+R L G E
Sbjct: 393 VLLRGLFEVGRTE 405
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Query: 98 TLTELRR----QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
T T L R +N++ A+ +F + +E +PD +Y ++ L K A +L
Sbjct: 144 TFTTLIRGLFAENKVKDAVHLFKKLVRENICEPDEVMYGTVMDGLCKKGHTQKAFDLLRL 203
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+++ PDT +Y +I + + GM+D A MK P +T+T LI L +
Sbjct: 204 MEQGITKPDTCIYNIVIDAFCKDGMLDGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQ 263
Query: 214 EELVAAVRRDCIQYVEFPE 232
E V + + I +P+
Sbjct: 264 WEKVRTLFLEMIHLNIYPD 282
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 43/81 (53%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ ++ +I L K ++ AEE+ + ++G++P+ Y ++ Y G + +A
Sbjct: 281 PDVCTFNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRI 340
Query: 186 YETMKASGCTPHKLTFTILIR 206
+++M G P +++T LI
Sbjct: 341 FDSMIDKGIEPDIISYTALIN 361
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 129 SLYSDMILMLG--KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
+LY+ L+ G KN + A F +L++ D + ++YT +I + G +DKA T+
Sbjct: 422 NLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVINGLCKNGKLDKAHATF 481
Query: 187 ETMKASGCTPHKLTFTILI 205
E + G P +T+T +I
Sbjct: 482 EKLPLIGLHPDVITYTAMI 500
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I LGK Q LF E+ + PD + +I + G ++ A E
Sbjct: 246 PDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCTFNSVIDGLCKEGKVEDAEEI 305
Query: 186 YETMKASGCTPHKLTFTILI 205
M G P+++T+ +++
Sbjct: 306 MTYMIEKGVEPNEITYNVVM 325
>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
montevidensis]
Length = 431
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 50/89 (56%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ YS +I L K +I A ELF E+ +GL P++ +T +I + + G +D AME
Sbjct: 209 QPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAME 268
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
Y+ M + +P +T+ LI L G+
Sbjct: 269 IYKQMLSQSLSPDLITYNTLIYGLCKKGD 297
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E Y L ++ ++ K+ I +A+ +F + K GL P Y ++ Y+++G +D
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNL 208
+ M ASG P T+++LI L
Sbjct: 195 EGFRLKSAMLASGVQPDVYTYSVLINGL 222
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ +DLA++++ + + PDL Y+ +I L K + A L E+ +GL PD
Sbjct: 259 KNGRVDLAMEIYKQMLSQS-LSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDK 317
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
YT +I + G +D A E + M + +T LI L G+
Sbjct: 318 ITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGQS 368
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D +Y+ +I L + Q AE++ E+ GL PD R YT +I + + G + K +
Sbjct: 351 DDVVYTALISGLCREGQSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLL 410
Query: 187 ETMKASGCTPHKLTFTILIRN 207
+ M+ G P +T+ +L+
Sbjct: 411 KEMQRDGHVPSVVTYNVLMNG 431
Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 3/120 (2%)
Query: 104 RQNELDLALKVFNFVRKEVW-YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
+ ++ +A VF+ + K W +P + Y+ ++ + + L + G+ PD
Sbjct: 154 KDGDIRIAQSVFDAITK--WGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPD 211
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
Y+ +I + ID A E ++ M G P+ +TFT LI G +L + +
Sbjct: 212 VYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYK 271
>gi|297804554|ref|XP_002870161.1| hypothetical protein ARALYDRAFT_915114 [Arabidopsis lyrata subsp.
lyrata]
gi|297315997|gb|EFH46420.1| hypothetical protein ARALYDRAFT_915114 [Arabidopsis lyrata subsp.
lyrata]
Length = 702
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 15/153 (9%)
Query: 78 KLEEGFQSRICRLLKADLLDTLTELR-RQNELDLALKVFNFVRKEV----------WYKP 126
KL E S C+ +AD+ D +T + E D + + N E KP
Sbjct: 114 KLAESLDS--CKPNEADVCDVITGFGGKLFEQDAVVTLNNMTNPETAPIVLNNLLETMKP 171
Query: 127 --DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
++ LY+ + + K+K + +E+LF E+ + G+ PD +T +I Q G+ +A+E
Sbjct: 172 SREVILYNVTLKVFRKSKNLEKSEKLFDEMLERGVKPDNATFTTIISCARQSGVPKRAVE 231
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
+E M + GC P +T +I AG E+
Sbjct: 232 WFEKMSSFGCEPDNVTLAAMIDAYGRAGNVEMA 264
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ P+ S Y+ +I G+ + A ++ E+K++GL +Y ++ + +G +D+A
Sbjct: 346 FTPNWSTYAALIRAYGRARYGDDALVIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAF 405
Query: 184 ETYETMK-ASGCTPHKLTFTILI 205
E ++ MK C P TF+ LI
Sbjct: 406 EIFQDMKNCETCDPDSWTFSSLI 428
Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 44/102 (43%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD + MI G+ + MA L+ + E D ++ +I +Y G D +
Sbjct: 242 EPDNVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLN 301
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
YE MKA G P+ + + L+ ++ A + +D I
Sbjct: 302 IYEEMKALGVKPNLVIYNRLLDSMGRAKRPWQAKIIHKDLIS 343
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 50/109 (45%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
+D A ++F ++ PD +S +I + + +++ AE ++++ G +P V T
Sbjct: 401 VDEAFEIFQDMKNCETCDPDSWTFSSLITVYSCSGRVSEAEAALLQMREAGFEPTLFVLT 460
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
+I Y + +D + T++ + G TP L+ + EE+
Sbjct: 461 SVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLNVMTQTPSEEI 509
>gi|255551975|ref|XP_002517032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543667|gb|EEF45195.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 875
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 97 DTLTE------LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEEL 150
DTL+ L+ Q + A+++F + + Y+ ++ Y+ MI +LGK KQ E L
Sbjct: 167 DTLSNKERSIILKEQCSWERAMEIFEWFKSRGCYELNVIHYNIMIRILGKAKQWRYLECL 226
Query: 151 FCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210
E+ + + P Y +I VY + G+ +KA++ E M G P ++T I+++ +
Sbjct: 227 CNEMSFKRISPINSTYGTLIDVYSKGGLREKALDWLEKMNKQGMEPDEVTMGIVVQMYKK 286
Query: 211 AGE 213
AGE
Sbjct: 287 AGE 289
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ +Y +I + + A +K GL +T +Y +I +Y +VG + +A E
Sbjct: 640 KPDIIVYGVLINAFADSGCVKEAISYIDAMKGAGLPGNTVIYNSLIKLYTKVGYLREAQE 699
Query: 185 TYETMKASGCTPHKLTFTILI 205
TY+ +++S P + +I
Sbjct: 700 TYKLLQSSDVGPETYSSNCMI 720
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 118 VRKEVWYKPDLSL----YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY 173
VR E + D+SL Y+ MI GK QI A ++F E+ ++ + P T + MI +
Sbjct: 316 VRVENERQMDVSLSSHTYNTMIDTYGKAGQIKEASDIFAEMLRKRILPTTVTFNTMIHIC 375
Query: 174 LQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
G +++ + M+ C P T+ ILI
Sbjct: 376 GNQGQLEEVALLMQKMEELRCPPDTRTYNILI 407
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 109 DLALKVFNFVRK--EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
DL K ++++K E D Y +I K ++ MAEE++ E+ + PD VY
Sbjct: 587 DLPDKAKHYLKKMQEAGLVSDCVQYCAVISSFVKLGKLEMAEEVYKEMVGFDVKPDIIVY 646
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
+I + G + +A+ + MK +G + + + LI+
Sbjct: 647 GVLINAFADSGCVKEAISYIDAMKGAGLPGNTVIYNSLIK 686
Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ N++++A F ++K+ +PDL Y ++ + AE L E+ ++G++ D
Sbjct: 412 KHNDINMAASYFKRMKKDQ-LQPDLVSYRTLLYAFSIRHMVNDAENLVSEMDEKGIEIDE 470
Query: 164 RVYTEMIGVYLQVGMIDKA 182
+ + +Y++ GM++K+
Sbjct: 471 YTQSALTRMYIEAGMLEKS 489
>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
Length = 1351
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 79/158 (50%), Gaps = 16/158 (10%)
Query: 67 VHAMKLAKSSSKLEEGFQSRICRLLKADL------LDTLTELRRQNELDLALKVFNFVRK 120
++ ++A ++ K+ FQ + + + D+ +DTL + +L+ L F +
Sbjct: 981 LNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLC---KAGQLNDGLTYFRQLL- 1036
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E+ +PDL Y+ +I LGK+K++ A LF E++K+G+ P+ Y +I L +G
Sbjct: 1037 EMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLI---LHLGKAG 1093
Query: 181 KAMET---YETMKASGCTPHKLTFTILIRNLENAGEEE 215
KA E YE + G P+ T+ LIR +G +
Sbjct: 1094 KAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTD 1131
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L + +R E A+ +FN ++K+ P+L Y+ +IL LGK + A A +++ EL
Sbjct: 1050 LIDGLGKSKRLEE---AVSLFNEMQKK-GIVPNLYTYNSLILHLGKAGKAAEAGKMYEEL 1105
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTI 203
+G P+ Y +I Y G D A Y M GC P+ T I
Sbjct: 1106 LTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSSTCHI 1154
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ + ++ L K+ ++ MA+ +F ELK G+ PDT YT MI + D+A++
Sbjct: 517 PDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKI 576
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ M + C P L LI L AG
Sbjct: 577 FYDMIENNCVPDVLVVNSLIDTLYKAG 603
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ Y+ I +LG+ ++ A + E++ EG PD +T +I V G I A +
Sbjct: 306 KPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAKD 365
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
+ MK S P ++T+ L+ + GE + V
Sbjct: 366 VFWKMKKSDQKPDRVTYITLLDKFADNGESQSV 398
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 65/134 (48%), Gaps = 6/134 (4%)
Query: 89 RLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAE 148
R+ LLD + E ++++N ++ + Y ++ Y+ +I L + ++ A
Sbjct: 379 RVTYITLLDKFAD---NGESQSVMEIWNAMKAD-GYNDNVVAYTAVIDALCQVGRVFEAL 434
Query: 149 ELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
E+F E+K++G+ P+ Y +I +L+ A+E ++ M G P+ T + I
Sbjct: 435 EMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGPKPNGYTHVLFINYY 494
Query: 209 ENAGEEELVAAVRR 222
+GE + A++R
Sbjct: 495 GKSGES--IKAIQR 506
Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD Y ++ N + E++ +K +G + + YT +I QVG + +A+E
Sbjct: 376 KPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALE 435
Query: 185 TYETMKASGCTPHKLTFTILIRNLENA 211
++ MK G P + ++ LI A
Sbjct: 436 MFDEMKQKGIVPEQYSYNSLISGFLKA 462
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ ++ +I +L +I+ A+++F ++KK PD Y ++ + G ME
Sbjct: 341 KPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVME 400
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ MKA G + + +T +I L G
Sbjct: 401 IWNAMKADGYNDNVVAYTAVIDALCQVG 428
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 4/119 (3%)
Query: 90 LLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEE 149
L+ L+DTL + R +E A ++F + KE+ +P Y+ ++ LG+ ++
Sbjct: 590 LVVNSLIDTLYKAGRGDE---AWQIF-YQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMH 645
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
L E+ P+ Y ++ + G ++ A++ +M GC P ++ +I L
Sbjct: 646 LLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGL 704
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 11/154 (7%)
Query: 60 SSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVR 119
S E+I+A+ +L KS + + L L + L +A +VF+ +
Sbjct: 497 SGESIKAIQRYELMKSKGIVPDVVAGNA----------VLFGLAKSGRLGMAKRVFHEL- 545
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K + PD Y+ MI K + A ++F ++ + PD V +I + G
Sbjct: 546 KAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKAGRG 605
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
D+A + + +K P T+ L+ L G+
Sbjct: 606 DEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREGK 639
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ P Y ++ L K +I AE LF E+ + G + +Y ++ + G +K
Sbjct: 935 FSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVC 994
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGE 213
++ M G P ++TI+I L AG+
Sbjct: 995 HLFQDMVDQGINPDIKSYTIIIDTLCKAGQ 1024
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 16/188 (8%)
Query: 36 IQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKAD- 94
IQ L + DA K W+ + + + + L K + E I +KAD
Sbjct: 351 IQVLCDAGRISDA-KDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADG 409
Query: 95 ----------LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQI 144
++D L ++ R E AL++F+ ++++ P+ Y+ +I K +
Sbjct: 410 YNDNVVAYTAVIDALCQVGRVFE---ALEMFDEMKQK-GIVPEQYSYNSLISGFLKADRF 465
Query: 145 AMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTIL 204
A ELF + G P+ + I Y + G KA++ YE MK+ G P + +
Sbjct: 466 GDALELFKYMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAV 525
Query: 205 IRNLENAG 212
+ L +G
Sbjct: 526 LFGLAKSG 533
>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
Length = 585
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L +++ LD A+ + + PD+ +Y+ +I + + ++ A ++F L +G
Sbjct: 424 LDYLCKKSHLDEAMALLKTIEGSNM-DPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKG 482
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
L P+ R YT MI + G++D+A + + M +GC+P T+ + + L
Sbjct: 483 LRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGL 532
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL+ Y ++ L K + A L ++ +DPD ++YT +I + G ++ A +
Sbjct: 415 PDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDI 474
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ + + G P+ T+TI+I L
Sbjct: 475 FSNLSSKGLRPNVRTYTIMINGL 497
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
Q+E+D A+KVF+ + Y P++ Y+ +I K +++ A LF E+ ++ L P+T
Sbjct: 325 QSEMDEAVKVFDTMVHN-GYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTV 383
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
Y ++ VG + A+ + M A G P T+ IL+ L
Sbjct: 384 TYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYL 427
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+++ L R A V + K + +PD + ++ +I L +I A LF ++
Sbjct: 108 LINSFCHLNRPG---FAFSVLAKILK-LGLQPDTATFTTLIRGLCVEGKIGDALHLFDKM 163
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
EG P+ Y +I +VG + A+ +M+ C P + +T +I +L
Sbjct: 164 IGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSL 217
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 5/139 (3%)
Query: 98 TLTELRR----QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
T T L R + ++ AL +F+ + E ++P++ Y +I L K A L
Sbjct: 139 TFTTLIRGLCVEGKIGDALHLFDKMIGE-GFQPNVVTYGTLINGLCKVGNTNAAIRLLRS 197
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+++ PD VYT +I + + +A + M G +P T+T LI +L N E
Sbjct: 198 MEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCE 257
Query: 214 EELVAAVRRDCIQYVEFPE 232
+ V + I P+
Sbjct: 258 WKHVTTLLNQMINSKIMPD 276
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ + +I + A + ++ K GL PDT +T +I G I A+
Sbjct: 100 PDVYTLNILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHL 159
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
++ M G P+ +T+ LI L G AA+R
Sbjct: 160 FDKMIGEGFQPNVVTYGTLINGLCKVGNTN--AAIR 193
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 44/81 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ ++S ++ L K +I A ++ + G++P+ Y ++ + +D+A++
Sbjct: 275 PDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKV 334
Query: 186 YETMKASGCTPHKLTFTILIR 206
++TM +G P+ +++ LI
Sbjct: 335 FDTMVHNGYAPNVISYNTLIN 355
>gi|168004269|ref|XP_001754834.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693938|gb|EDQ80288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 504
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+S + +I + I AEE+F L+ +GL PD +T ++G Y Q + K +
Sbjct: 404 KPDISTLNTLINAYAQGGYIEKAEEVFNSLESKGLTPDVMSWTSLMGAYAQRKLFRKCVS 463
Query: 185 TYETMKASGCTPHKLTFTILI 205
++ M +GC P + T + +
Sbjct: 464 IFQKMVKAGCIPDRATAKVFL 484
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 64/116 (55%), Gaps = 10/116 (8%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPD---------LSLYSDMILMLGKNKQIAMAEE 149
L R +L+ A K+F+ + KE Y P ++ Y+ + +LGK+ +++ AE+
Sbjct: 125 LAAYSRGVQLEKAEKLFHEM-KESNYSPGTVEWMIFSGIATYNTYLEVLGKSGRLSQAED 183
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
F +++K+G+ P +T MI +Y + DKA + + +M+ + C P+ T+T L+
Sbjct: 184 TFRDMQKQGILPAVNTFTIMINIYGKAYYSDKADDLFRSMRKALCPPNLYTYTALM 239
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
D A +F +RK + P+L Y+ ++ + AEE+F EL+ G PD Y
Sbjct: 214 DKADDLFRSMRKAL-CPPNLYTYTALMNAHAREGNCVRAEEIFAELQSVGFIPDVYTYNA 272
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
++ Y + A E ++ M +G P ++++ ILI AG
Sbjct: 273 LLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGRAG 316
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD +++ ++ G + +I E L + PD +I Y Q G I+KA E
Sbjct: 369 KPDTFMFNSLLSAYGNSGRIDEMESLLESMVSSVAKPDISTLNTLINAYAQGGYIEKAEE 428
Query: 185 TYETMKASGCTPHKLTFTILI 205
+ ++++ G TP +++T L+
Sbjct: 429 VFNSLESKGLTPDVMSWTSLM 449
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+ V + PD+ Y+ ++ + + A+E+F + + G+ PD Y +I + + G+
Sbjct: 259 QSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGRAGLT 318
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRRDCIQYVEFPERFL 235
A Y++MK +G P + +L+ + AG+ E LV + ++ P+ F+
Sbjct: 319 ADAQAVYDSMKEAGFKPTMKSHMLLLSSYAKAGKVTEAERLVREIENSGVK----PDTFM 374
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE +KP + + ++ K ++ AE L E++ G+ PDT ++ ++ Y G I
Sbjct: 329 KEAGFKPTMKSHMLLLSSYAKAGKVTEAERLVREIENSGVKPDTFMFNSLLSAYGNSGRI 388
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
D+ E+M +S P T LI G
Sbjct: 389 DEMESLLESMVSSVAKPDISTLNTLINAYAQGG 421
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 53/110 (48%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
+++ + ELRR + + ++ + +KPD+ ++ +I GK+KQ AE+ F +
Sbjct: 50 IMENVAELRRLRNWRSVILILEWILQGTMFKPDVGCFNMLIDAYGKSKQWREAEKTFHLM 109
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTIL 204
K P + ++ Y + ++KA + + MK S +P + + I
Sbjct: 110 KDFQCLPTETSFNVLLAAYSRGVQLEKAEKLFHEMKESNYSPGTVEWMIF 159
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 9/111 (8%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P ++ ++ MI + GK A++LF ++K P+ YT ++ + + G +A E
Sbjct: 195 PAVNTFTIMINIYGKAYYSDKADDLFRSMRKALCPPNLYTYTALMNAHAREGNCVRAEEI 254
Query: 186 YETMKASGCTPHKLTFTILI----RNLENAGEEELV-----AAVRRDCIQY 227
+ +++ G P T+ L+ R G +E+ A VR D + Y
Sbjct: 255 FAELQSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSY 305
>gi|449491568|ref|XP_004158939.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 412
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A+++FN + K +K D YS +I L K ++ +A E F +L +EGL P+ MI
Sbjct: 291 AMELFNEL-KSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMI 349
Query: 171 GVYLQVGMIDKA---METYETMKASGCTPHKLTFTILIRNL-ENAGEEELVAAVRR 222
+ +V +DKA E E M+ +GCTP +T+ L+R E+ EE+V + +
Sbjct: 350 HGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCESNKLEEVVNLLHK 405
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 46/82 (56%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P+L ++ +I +L K ++ A++L + G+ D Y +I + ++G + A +
Sbjct: 129 QPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDLSSARK 188
Query: 185 TYETMKASGCTPHKLTFTILIR 206
+ +M + GC +++++TILI
Sbjct: 189 LFLSMPSKGCEHNEISYTILIN 210
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 1/110 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
LT L + ++ A K+F V K D +Y + L KN + A ELF ELK
Sbjct: 244 LTGLLQTGKVGDANKLFG-VMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYN 302
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
D Y+ +I + G ++ A E ++ + G P+ +T I+I
Sbjct: 303 FKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGF 352
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 50/96 (52%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
+V +P++ YS ++ L + ++ A +LF +K G+ D+ +Y + + G++
Sbjct: 230 QVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLF 289
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
+AME + +K+ +++ LI L AG+ E+
Sbjct: 290 EAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEI 325
Score = 37.0 bits (84), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 17/107 (15%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMA-----------------EELFCELKKEGLDPDTRVY 166
Y PD+ Y+ +I L + +I++A +E+F E+K +G+ P+ Y
Sbjct: 41 YIPDIVTYNTLIKGLCRVHRISVATCIIIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISY 100
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ ++ + G ++++ + M G P+ + F +LI L G+
Sbjct: 101 SSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGK 147
>gi|125591609|gb|EAZ31959.1| hypothetical protein OsJ_16132 [Oryza sativa Japonica Group]
Length = 756
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R +LD ++++ +R+ +P LY+ ++ ++ ++ +A +LF +++K G P
Sbjct: 300 LVRAGKLDAGMELWEEMRRG-GLRPSFGLYTMVVEANARSGRLDVATQLFGDMEKSGFFP 358
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
Y ++ ++ G +D AM Y +M +G P TFT L+ L N +L A V
Sbjct: 359 TPATYACLVEMHASAGQVDAAMRLYHSMANAGQRPGLSTFTALLMMLANKRMLDLAAKV 417
Score = 37.0 bits (84), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R LD+A ++F + K ++ P + Y+ ++ M Q+ A L+ + G P
Sbjct: 337 RSGRLDVATQLFGDMEKSGFF-PTPATYACLVEMHASAGQVDAAMRLYHSMANAGQRPGL 395
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
+T ++ + M+D A + MKASG P ++T + L+ G EL
Sbjct: 396 STFTALLMMLANKRMLDLAAKVLLEMKASGF-PIEVTASDLLMIYIKEGSTEL 447
>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 621
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 19/144 (13%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ +S +I K ++ AEEL E+ + G+ PDT YT +I + + +DKA
Sbjct: 315 PDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHM 374
Query: 186 YETMKASGCTPHKLTFTILIR-----NLENAGEEEL----VAAVRRDCIQYVEFPERFLE 236
+ M + GC P+ TF ILI NL + G E + V D + Y + F E
Sbjct: 375 LDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 434
Query: 237 --------EVYQK--HRKTQVDLV 250
E++Q+ R+ + D+V
Sbjct: 435 LGKLEVAKELFQEMVSRRVRPDIV 458
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 10/133 (7%)
Query: 80 EEGFQSRICRLLKAD------LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSD 133
+E FQ + R ++ D LLD L + E + AL++F + K + D+ +Y+
Sbjct: 442 KELFQEMVSRRVRPDIVSYKILLDGLCD---NGEPEKALEIFEKIEKS-KMELDIGIYNI 497
Query: 134 MILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG 193
+I + ++ A +LFC L +G+ PD + Y MIG + G + +A + M+ G
Sbjct: 498 IIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDG 557
Query: 194 CTPHKLTFTILIR 206
+P+ T+ ILIR
Sbjct: 558 HSPNGCTYNILIR 570
>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]
Length = 1274
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 15/158 (9%)
Query: 79 LEEGFQSR-----IC--RLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLY 131
L GF R +C R+ ++D L + LD A+ + N + K+ PD+ Y
Sbjct: 386 LARGFYMRMKRNGVCVGRITYTGMIDGLC---KNGFLDEAVVLLNEMSKD-GIDPDIVTY 441
Query: 132 SDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA 191
S +I K + A+E+ C + + GL P+ +Y+ +I ++G + +A+ YE M
Sbjct: 442 SALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMIL 501
Query: 192 SGCTPHKLTFTILIRNLENAGE----EELVAAVRRDCI 225
G T TF +L+ +L AG+ EE + + D I
Sbjct: 502 EGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGI 539
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 101 ELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD 160
+L R N + + +RK + + P+ Y+ +I ++ +A +L E+ GL
Sbjct: 272 DLCRSNRIAKGYLLLRDMRKRMIH-PNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLS 330
Query: 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
P+ + +I ++ G +A++ + M+A G TP ++++ +L+ L E +L
Sbjct: 331 PNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDL 386
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
ALK+F + + ++S Y ++ L KN + +A + +K+ G+ YT MI
Sbjct: 352 ALKMFYMMEAKGLTPSEVS-YGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMI 410
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRR 222
+ G +D+A+ M G P +T++ LI G +E+V + R
Sbjct: 411 DGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYR 466
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 134 MILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG 193
M+ +L +N + + + E+ K+G+ P++R Y +I +VG I A E M A
Sbjct: 865 MVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHK 924
Query: 194 CTPHKLTFTILIRNLENAGEEE 215
P + + ++R L G+ +
Sbjct: 925 ICPPNVAESAMVRALAKCGKAD 946
>gi|18057130|gb|AAL58153.1|AC093093_26 putative membrane-associated salt-inducible protein [Oryza sativa
Japonica Group]
Length = 704
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 7/135 (5%)
Query: 102 LRRQNELDLALKVFNFVR-KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD 160
L ++D A++V+ +R ++ +P L Y+ + +L + A A E+F E+ EGL
Sbjct: 493 LAHAGDVDAAMRVWEEMRARKGKCRPTLVSYTACVKILFDAGRPAEAREVFQEMVAEGLR 552
Query: 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
P + YT +I VG + ME + M+ +G P K IL++ AGE ++ +
Sbjct: 553 PSCKTYTVLIEHLANVGKFEATMEIMDKMQEAGVEPDKALCNILVQKCSRAGETSVMTRI 612
Query: 221 RRDCIQYVEFPERFL 235
+QY++ E F+
Sbjct: 613 ----LQYMK--ENFI 621
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++ D Y+ M+ +LG+ ++ L E+ + G+DPD +T ++ G +D AM
Sbjct: 444 FRHDRFTYTSMLHLLGEAGRVPAMMRLLAEMLRAGVDPDAATFTTVMHWLAHAGDVDAAM 503
Query: 184 ETYETMKA--SGCTPHKLTFTILIRNLENAGE--------EELVA-AVRRDCIQYV 228
+E M+A C P +++T ++ L +AG +E+VA +R C Y
Sbjct: 504 RVWEEMRARKGKCRPTLVSYTACVKILFDAGRPAEAREVFQEMVAEGLRPSCKTYT 559
>gi|413934892|gb|AFW69443.1| hypothetical protein ZEAMMB73_914225 [Zea mays]
Length = 561
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+EV + D+ +YS +I GK Q+A A +F +++ EG+ PD + +I + +VG +
Sbjct: 220 QEVGVELDVKIYSGLIDTFGKYGQLADARRMFDKMRAEGVRPDISTWNALIQWHCRVGNM 279
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+A+ + +M+ G P F ++I L G+
Sbjct: 280 KRALRFFTSMQEEGMYPDPKIFVMIISRLGEQGK 313
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 42/80 (52%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D + YS ++ + N A +L E+++ G++ D ++Y+ +I + + G + A +
Sbjct: 192 DTAGYSMLVRLYRDNGMWKKATDLVMEMQEVGVELDVKIYSGLIDTFGKYGQLADARRMF 251
Query: 187 ETMKASGCTPHKLTFTILIR 206
+ M+A G P T+ LI+
Sbjct: 252 DKMRAEGVRPDISTWNALIQ 271
>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
Length = 725
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 69/123 (56%), Gaps = 7/123 (5%)
Query: 104 RQNELDLALKVFNFVRK--EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG-LD 160
R +LD A++ VRK E Y+P+ Y++++ L +++ A +LF E+++ G
Sbjct: 161 RVGDLDGAVE---LVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCP 217
Query: 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE-EELVAA 219
PD Y+ ++ ++ G +D A E M + GC+P+ +T++ L+ L AG+ +E A
Sbjct: 218 PDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATAL 277
Query: 220 VRR 222
++R
Sbjct: 278 LQR 280
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ LD AL++ + + Y PD+ +S I L K ++ A EL + + GL PDT
Sbjct: 583 KTGNLDKALEILQLLLSKGSY-PDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDT 641
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL-ENAGEEELVAAVRR 222
Y ++ + + A++ +E M+ GC P T+T L+ +L + ++L+A V +
Sbjct: 642 VTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSK 701
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ YS ++ L K ++ A L + + G P+ Y +I + ++G ID+A
Sbjct: 253 PNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHL 312
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
E M GC P+ +T+T+L+ G+ E
Sbjct: 313 LEEMVDGGCQPNVVTYTVLLDAFCKCGKAE 342
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 52/99 (52%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
+LD AL++F + + PD+ YS ++ L K+ ++ A L + +G P+ Y
Sbjct: 199 KLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTY 258
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ ++ + G +D+A + M SGC+P+ +T+ +I
Sbjct: 259 SSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTII 297
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I L K+K++ A +LF ++ +GL PD Y+ +I + +D+A
Sbjct: 499 PDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNV 558
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
E M +G P +T+ LI G
Sbjct: 559 LELMLKNGFDPGAITYGTLIDGFCKTGN 586
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD YS +I L K + + A + + K G DP Y +I + + G +DKA+E
Sbjct: 534 PDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEI 593
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ + + G P +TF+I I L G
Sbjct: 594 LQLLLSKGSYPDVVTFSIFIDWLSKRG 620
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 57/125 (45%), Gaps = 2/125 (1%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L + + LD A+++ + + P++ Y+ ++ K ++ A L ++ G
Sbjct: 51 INGLSKSDRLDDAIRLLEEMVDN-GFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRG 109
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE-EELV 217
PD YT +I ++ +D+A + M GC P+ +T+ L+ G+ + V
Sbjct: 110 CPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAV 169
Query: 218 AAVRR 222
VR+
Sbjct: 170 ELVRK 174
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 118 VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177
V E Y P+L Y+ ++ M K ++ A +L + ++G P+ Y +I +
Sbjct: 350 VMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKAT 409
Query: 178 MIDKAMETYETMKASGCTPHKLTFTILI 205
+ + + E M ++ C P +TF +I
Sbjct: 410 KVHEGVLLLEQMLSNNCVPDIVTFNTII 437
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 39/83 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+ +I L K ++ L ++ PD + +I + +D A E
Sbjct: 393 PNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYEL 452
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ ++ SGCTP+ +T+ L+ L
Sbjct: 453 FNLIQESGCTPNLVTYNSLVHGL 475
>gi|125568888|gb|EAZ10403.1| hypothetical protein OsJ_00236 [Oryza sativa Japonica Group]
Length = 378
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+++I LGKN+ + AE+L+ E+ + G++PD Y +I Y +V +D ++
Sbjct: 110 PDALSYNNLIDWLGKNELVGEAEQLYKEMGERGVNPDEYTYVLLIESYFKVDRVDDSVSY 169
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ M +G P+ F +I L
Sbjct: 170 FNKMFVAGLRPNANAFNKVIGGL 192
>gi|293334437|ref|NP_001169582.1| uncharacterized protein LOC100383463 [Zea mays]
gi|224030203|gb|ACN34177.1| unknown [Zea mays]
gi|413935329|gb|AFW69880.1| hypothetical protein ZEAMMB73_684747 [Zea mays]
Length = 622
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 112 LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELK------KEGLDPDTRV 165
L++F F+ + + PD Y+ M+ L + +A A LF ++ + G P+
Sbjct: 138 LRLFRFLPEAYAFAPDAITYNSMLAALCRAGDLATARRLFDGMRAGEQGGEAGAFPNVVA 197
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
YT MI + D+A+ ++ M A G P+++T+ +++ AG ELV V
Sbjct: 198 YTTMIRACCASRLADEALSLFKMMLADGVRPNRITYNTMVQGFCQAGRMELVKEV 252
>gi|357150324|ref|XP_003575420.1| PREDICTED: pentatricopeptide repeat-containing protein At4g36680,
mitochondrial-like [Brachypodium distachyon]
Length = 468
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 17/161 (10%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LL RR + + +F + KE PD + Y ++ + A A E+ ++
Sbjct: 147 LLSAFVRCRRHRRVPV---LFTELSKEFSITPDATSYGILVKAHCMVRHDAKAHEVLAQM 203
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
++EG+ P T ++T MI + I++A ++ M SGC P + T+ + N G+
Sbjct: 204 REEGISPTTTIFTTMIDSMYKQKKIEEAETLWKQMLESGCKPDQATYNVKAMNFGLHGKP 263
Query: 215 ELV---------AAVRRDCIQYVEFPERFLEEVYQKHRKTQ 246
E V A V+ D I Y FL Y K+ K +
Sbjct: 264 EDVLLVMAEMEAAGVKPDTITY-----NFLMTSYCKNGKVE 299
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 53/112 (47%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E KPD + Y+ + G + + + E++ G+ PDT Y ++ Y + G ++
Sbjct: 240 ESGCKPDQATYNVKAMNFGLHGKPEDVLLVMAEMEAAGVKPDTITYNFLMTSYCKNGKVE 299
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
A Y ++ A GC+P+ T+ ++ L G+ + + R+ + + P+
Sbjct: 300 DAKGLYHSLGAKGCSPNAATYKHMMAYLFAHGDFDAAMKIFRESLSKHKVPD 351
>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05670, mitochondrial-like [Cucumis sativus]
Length = 748
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ +I G+ ++ + LF E+ GL PD YT +I VY + G + A
Sbjct: 396 PDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSL 455
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRRDCIQ 226
+ M G TP+ +T+ LI L GE EL+ +R+ +Q
Sbjct: 456 HNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQ 500
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + ELD A ++ + +RK+ + ++ +Y+ M+ + K I A +L E++ G+DP
Sbjct: 478 LCKHGELDTANELLDEMRKK-GLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDP 536
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
D YT +I Y ++G IDKA + + M G P +TF +L+
Sbjct: 537 DAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGF 583
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP+ Y+ +IL+L K + AE++ E+ + + PD VYT +I + ++G + A +
Sbjct: 325 KPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANK 384
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
++ M + +P +T+T LI+ G+
Sbjct: 385 WFDEMLSKKISPDYITYTTLIQGFGQGGK 413
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD +Y+ +I K + A + F E+ + + PD YT +I + Q G + +
Sbjct: 361 PDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNL 420
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+ M + G P ++T+T LI AGE
Sbjct: 421 FHEMISRGLKPDEVTYTTLIDVYCKAGE 448
>gi|356544435|ref|XP_003540656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
chloroplastic-like [Glycine max]
Length = 1071
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 66/147 (44%), Gaps = 7/147 (4%)
Query: 70 MKLAKSSSKLEEGFQSRICRLLKADLLDTLTEL----RRQNELDLALKVFNFVRKEVWYK 125
+ K ++E F RL+ +L T L + + A +V + K+ +
Sbjct: 415 FNICKKRKAVKEAFD--FIRLIPNPMLSTFNMLMSVCASSQDSEGAFQVLQLL-KDARLE 471
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD LY+ +IL K+ ++ + E+F ++ G++P+ Y +IG + G + KA
Sbjct: 472 PDCKLYTTLILTCAKSGKVDLMFEVFHKMVNSGVEPNVHTYGALIGGCARAGQVAKAFGA 531
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
Y M++ P ++ F LI +G
Sbjct: 532 YGIMRSKNVKPDRVVFNALIAACAQSG 558
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 113 KVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGV 172
+ F+F+R + P LS ++ ++ + ++ A ++ LK L+PD ++YT +I
Sbjct: 426 EAFDFIR--LIPNPMLSTFNMLMSVCASSQDSEGAFQVLQLLKDARLEPDCKLYTTLILT 483
Query: 173 YLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ G +D E + M SG P+ T+ LI AG+
Sbjct: 484 CAKSGKVDLMFEVFHKMVNSGVEPNVHTYGALIGGCARAGQ 524
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 15/157 (9%)
Query: 70 MKLAKSSSKLEEGFQSRICRLLKADLLDTLTEL--------RRQNELDLALKVFN-FVRK 120
M + SS E FQ + +LLK L+ +L + ++DL +VF+ V
Sbjct: 446 MSVCASSQDSEGAFQ--VLQLLKDARLEPDCKLYTTLILTCAKSGKVDLMFEVFHKMVNS 503
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
V +P++ Y +I + Q+A A + ++ + + PD V+ +I Q G +D
Sbjct: 504 GV--EPNVHTYGALIGGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIAACAQSGAVD 561
Query: 181 KAMETYETMKASG--CTPHKLTFTILIRNLENAGEEE 215
+A + M A P +T L++ AG+ E
Sbjct: 562 RAFDVLAEMAAETQPIDPDHVTIGALLKACTKAGQVE 598
>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Glycine max]
Length = 545
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 6/120 (5%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG---KNKQIAMAEELFCELK 155
+ L + +LD A+ + N + K+ +PD+ Y+ IL+ G K K++ A+ LF +L
Sbjct: 412 INGLCKNGQLDKAIALINKM-KDQGIQPDM--YTLNILLHGLLCKGKRLKNAQGLFQDLL 468
Query: 156 KEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+G P+ Y +I + + G++D+A M+ SGC+P+ +TF I+I L GE +
Sbjct: 469 DKGYHPNVYTYNIIIYGHCKEGLLDEAYALQSKMEDSGCSPNAITFKIIICALLEKGETD 528
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A VFN V + PD+ Y+ MI L K K++ A L+ E+ ++ + P+T Y +I
Sbjct: 319 AKHVFNAV-GLMGVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLI 377
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE-EELVAAVRR 222
+ G I A + + M G + +T+ LI L G+ ++ +A + +
Sbjct: 378 DGLCKSGRISYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQLDKAIALINK 430
>gi|356513139|ref|XP_003525271.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Glycine max]
Length = 621
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A VF+ + +E +KP L Y+ ++ L + K+ L ++ G+ PD+ + MI
Sbjct: 79 AQAVFHNLTEE-GHKPTLITYTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLNAMI 137
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ G +D+AM+ ++ MK GC P T+ LI+ G
Sbjct: 138 NAFSDSGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIVG 179
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
N +D AL + +E KPD+ +S ++ + EE+F ++ K G++PD
Sbjct: 323 NGVDEALTLM----EEFGIKPDVVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGIEPDIHA 378
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
Y+ + Y++ G KA +M G + + FT +I AG+
Sbjct: 379 YSILAKGYVRAGQPRKAESLLTSMSKYGVQTNVVIFTTIISGWCAAGK 426
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
+D ++FN + K +PD+ YS + + Q AE L + K G+ + ++T
Sbjct: 357 MDNCEEIFNDMVK-AGIEPDIHAYSILAKGYVRAGQPRKAESLLTSMSKYGVQTNVVIFT 415
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+I + G +D+A E M G +P+ T+ LI
Sbjct: 416 TIISGWCAAGKMDRAFSLCEKMHEMGTSPNLKTYETLI 453
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL-KKEGLDPDTRV 165
++D A+K+F + KE KP S Y+ +I G + + +L + + E + P+ R
Sbjct: 145 KVDEAMKIFQKM-KEYGCKPTTSTYNTLIKGFGIVGRPYESMKLLEMMGQDENVKPNDRT 203
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
Y +I + +++A M ASG P +T+ + R GE E
Sbjct: 204 YNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETE 253
>gi|300681579|emb|CBI75523.1| PPR repeat domain containing protein [Triticum aestivum]
Length = 728
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD LY+ +I K + A E+F E++ EGL D+ VYT +IG + +V +D A
Sbjct: 596 PDRILYTSLIACYCKRSNMKAALEIFREMETEGLSADSFVYTCLIGGFSKVLAMDGAQLF 655
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
E M G TP +T+T LI G+E+ A+ +Q
Sbjct: 656 MEEMMNKGLTPTVVTYTDLIVGYFKIGDEKKAMAMYNSMLQ 696
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L R ++LA ++F + K+ +K D +YS ++ ++ + + +L+ ++
Sbjct: 360 LHGLCRAGRVELAFELFKRL-KDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHN 418
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
PD Y+ +I Y + + +A+E +E M + G P+ +T TIL+ N G
Sbjct: 419 FVPDAYNYSSLIYAYCRHRQLKEALEVFELMVSDGICPNVVTCTILVHGFSNEG 472
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ Y+ +I L + ++ LF + EGL PD +YT +I Y + + A+E
Sbjct: 560 KPNIFTYTSLINGLCHDDKLPEVMTLFKHMIGEGLAPDRILYTSLIACYCKRSNMKAALE 619
Query: 185 TYETMKASGCTPHKLTFTILI 205
+ M+ G + +T LI
Sbjct: 620 IFREMETEGLSADSFVYTCLI 640
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAM-AEELFCE-LKKEGLDP 161
+++ + AL++F + E D +Y+ L+ G +K +AM +LF E + +GL P
Sbjct: 610 KRSNMKAALEIFREMETE-GLSADSFVYT--CLIGGFSKVLAMDGAQLFMEEMMNKGLTP 666
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
YT++I Y ++G KAM Y +M +G P IL L N G +
Sbjct: 667 TVVTYTDLIVGYFKIGDEKKAMAMYNSMLQAGIAPDAKLSCIL--GLGNDGHD 717
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 52/115 (45%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PD YS +I +++Q+ A E+F + +G+ P+ T ++ + G+I +A
Sbjct: 419 FVPDAYNYSSLIYAYCRHRQLKEALEVFELMVSDGICPNVVTCTILVHGFSNEGLIGEAF 478
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEV 238
+ ++ G P T+ ++I L + + + D I+ P+ L +
Sbjct: 479 LFLDKVRQFGVVPSLCTYRVIIHGLCKVNKPNDMWGIFADMIKRGYVPDTVLYSI 533
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y PD LYS +I K + A L+ ++ EG P+ YT +I + + M
Sbjct: 524 YVPDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVM 583
Query: 184 ETYETMKASGCTPHKLTFTILI 205
++ M G P ++ +T LI
Sbjct: 584 TLFKHMIGEGLAPDRILYTSLI 605
>gi|449467169|ref|XP_004151297.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Cucumis sativus]
gi|449518833|ref|XP_004166440.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Cucumis sativus]
Length = 609
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query: 92 KADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELF 151
+ L++ L E + E +FN + E ++P Y+ ++ L + K+ L
Sbjct: 60 RTKLMNILVERGKPQEAQF---IFNSL-VEQGHRPTTVTYTALVAALTRQKRFKAISGLL 115
Query: 152 CELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
E+++ G+ PD+ + +I + + G + +AME ++ M+ SGC P TF LI+
Sbjct: 116 SEMEETGIKPDSILLNAIINAFSESGNVKEAMEIFQKMEESGCKPTTSTFNTLIK 170
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 15/116 (12%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILML-------GKNKQIAMAEELFCELKKE 157
Q L AL+V + +++ P+L +++ +I G +K + M EE
Sbjct: 281 QGNLAEALRVV-YRMRDLGIHPNLVIFNSLIKGFLDIGDSDGVDKALTMMEE-------S 332
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
G+ PD ++ ++ + G +DK E ++ M SG P F+IL + AGE
Sbjct: 333 GVKPDVITFSTIMNGWSSAGRMDKCQEIFDDMLKSGIEPDIHVFSILAKGFVRAGE 388
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
L+ ++ + +D AL + +E KPD+ +S ++ ++ +E+F +
Sbjct: 308 SLIKGFLDIGDSDGVDKALTMM----EESGVKPDVITFSTIMNGWSSAGRMDKCQEIFDD 363
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ K G++PD V++ + +++ G KA M G P+ + FT +I AG+
Sbjct: 364 MLKSGIEPDIHVFSILAKGFVRAGEPVKAESLLNFMSKYGVRPNVVIFTTIISGWCTAGK 423
Query: 214 EE 215
E
Sbjct: 424 ME 425
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ ++S + + + AE L + K G+ P+ ++T +I + G ++KA +
Sbjct: 370 EPDIHVFSILAKGFVRAGEPVKAESLLNFMSKYGVRPNVVIFTTIISGWCTAGKMEKAWK 429
Query: 185 TYETMKASGCTPHKLTFTILI 205
+E M +P+ TF LI
Sbjct: 430 VFEHMCDMDVSPNLKTFETLI 450
Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E KPD L + +I ++ + A E+F ++++ G P T + +I Y +
Sbjct: 119 EETGIKPDSILLNAIINAFSESGNVKEAMEIFQKMEESGCKPTTSTFNTLIKGYGIIRKP 178
Query: 180 DKAMETYETM-KASGCTPHKLTFTIL---------IRNLENAGEEELVAAVRRDCIQY 227
+++M+ E M + + P+ T+ IL I+ N + L + V+ D + Y
Sbjct: 179 EESMKLLELMTRTTNLKPNNRTYNILVGALCKKKSIKEAWNVVHQMLASGVQPDVVTY 236
>gi|357129672|ref|XP_003566485.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like, partial [Brachypodium distachyon]
Length = 564
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R + DLA K +R E+ + D+ YS ++ L + + A + + +EG P
Sbjct: 161 RSSRFDLAYKEILRMR-ELGVEADVGTYSTLVTGLCRVGRTGEAWGVLEWMLEEGCYPMV 219
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ YT ++ Y G +++AME TM+ +GC P+ +T+ +LIR L +A
Sbjct: 220 QTYTPIVQGYCHEGRVEEAMEVMATMERAGCPPNVVTYNVLIRALCDAA 268
>gi|124360267|gb|ABN08280.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 349
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 55/107 (51%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
D AL +F +R++ DL Y+ ++ +LG+ ++ ++F LK+ G PDT Y
Sbjct: 177 DSALAIFEHLREQNNSCLDLITYNIVLDILGRKGRVDEMLDMFASLKETGFVPDTISYNT 236
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+I +VG D E ++ MK +G P LT+T LI AG E
Sbjct: 237 LINGLRKVGRSDMCFEYFKEMKENGNEPDLLTYTALIDISGRAGNIE 283
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R+ +D L +F + KE + PD Y+ +I L K + M E F E+K+ G +P
Sbjct: 206 LGRKGRVDEMLDMFASL-KETGFVPDTISYNTLINGLRKVGRSDMCFEYFKEMKENGNEP 264
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
D YT +I + + G I+++++ + MK G P + LI NL EL
Sbjct: 265 DLLTYTALIDISGRAGNIEESLKFFMEMKLKGILPSIQIYRSLIHNLNKTENIEL 319
Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
LR+ D+ + F + KE +PDL Y+ +I + G+ I + + F E+K +G+ P
Sbjct: 241 LRKVGRSDMCFEYFKEM-KENGNEPDLLTYTALIDISGRAGNIEESLKFFMEMKLKGILP 299
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASG 193
++Y +I + I+ A E E M +S
Sbjct: 300 SIQIYRSLIHNLNKTENIELATELLEEMNSSS 331
>gi|115443885|ref|NP_001045722.1| Os02g0121900 [Oryza sativa Japonica Group]
gi|41052752|dbj|BAD07608.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535253|dbj|BAF07636.1| Os02g0121900 [Oryza sativa Japonica Group]
gi|125580614|gb|EAZ21545.1| hypothetical protein OsJ_05173 [Oryza sativa Japonica Group]
gi|218189948|gb|EEC72375.1| hypothetical protein OsI_05641 [Oryza sativa Indica Group]
Length = 624
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 112 LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD------PDTRV 165
L++F F+ + PD Y+ ++ L + + A +LF ++ G + P+
Sbjct: 139 LRLFRFLPDTYAFAPDAISYNSLLSALCRAGDVLTARKLFDGMRVGGEEGRGAVFPNVIT 198
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
YT MI Y ++++A+ ++ M A G P+++T+ +++ +AG ELV V
Sbjct: 199 YTTMIKAYCAKRLVNEALAIFKLMVADGVAPNRITYNTMVQGFCDAGRMELVKEV 253
>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840
Length = 1096
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 15/158 (9%)
Query: 79 LEEGFQSR-----IC--RLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLY 131
L GF R +C R+ ++D L + LD A+ + N + K+ PD+ Y
Sbjct: 386 LARGFYMRMKRNGVCVGRITYTGMIDGLC---KNGFLDEAVVLLNEMSKD-GIDPDIVTY 441
Query: 132 SDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA 191
S +I K + A+E+ C + + GL P+ +Y+ +I ++G + +A+ YE M
Sbjct: 442 SALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMIL 501
Query: 192 SGCTPHKLTFTILIRNLENAGE----EELVAAVRRDCI 225
G T TF +L+ +L AG+ EE + + D I
Sbjct: 502 EGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGI 539
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 101 ELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD 160
+L R N + + +RK + + P+ Y+ +I ++ +A +L E+ GL
Sbjct: 272 DLCRSNRIAKGYLLLRDMRKRMIH-PNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLS 330
Query: 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
P+ + +I ++ G +A++ + M+A G TP ++++ +L+ L E +L
Sbjct: 331 PNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDL 386
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
ALK+F + + ++S Y ++ L KN + +A + +K+ G+ YT MI
Sbjct: 352 ALKMFYMMEAKGLTPSEVS-YGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMI 410
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRR 222
+ G +D+A+ M G P +T++ LI G +E+V + R
Sbjct: 411 DGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYR 466
Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 134 MILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG 193
M+ +L +N + + + E+ K+G+ P++R Y +I +VG I A E M A
Sbjct: 865 MVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHK 924
Query: 194 CTPHKLTFTILIRNLENAGEEE 215
P + + ++R L G+ +
Sbjct: 925 ICPPNVAESAMVRALAKCGKAD 946
>gi|224099036|ref|XP_002311357.1| predicted protein [Populus trichocarpa]
gi|222851177|gb|EEE88724.1| predicted protein [Populus trichocarpa]
Length = 369
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 64/123 (52%), Gaps = 7/123 (5%)
Query: 114 VFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY 173
+F ++++ +Y+P + Y ++++LG+ Q A ++F E+ +EG++P + YT ++ Y
Sbjct: 1 MFEMLKEQPFYQPKEATYMKLLVLLGRCGQPQRAHQIFDEMIEEGIEPTSEFYTALLAAY 60
Query: 174 LQVGMIDKAMETYETMKA-SGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
+ +I++ MK C P T++ L++ +A EL+ I Y E E
Sbjct: 61 CRNNLIEEGFSIINQMKTVPRCQPDVYTYSTLLKACVDASRFELID------ILYQEMDE 114
Query: 233 RFL 235
R +
Sbjct: 115 RLI 117
>gi|357155349|ref|XP_003577091.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Brachypodium distachyon]
Length = 877
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD +Y+ +I +N+ + A ++F ++++G+ PD Y MI Y Q GM+++A+E
Sbjct: 537 PDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVEC 596
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
TM+ G P + T+T LI G
Sbjct: 597 MSTMRKVGRIPDEFTYTTLIGGYAKQGN 624
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
++V PD Y+ +I K I+ A L C++ K P+ Y+ +I Y ++G
Sbjct: 601 RKVGRIPDEFTYTTLIGGYAKQGNISGALSLLCDMMKRRCQPNVVAYSSLINGYCKLGDT 660
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNL 208
D A + +M++ G P+ +T+TILI +L
Sbjct: 661 DAAECLFGSMESQGLFPNVITYTILIGSL 689
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R LD A K+F F+ ++ + PD+ Y+ MI + + A E ++K G PD
Sbjct: 551 RNESLDEARKIFEFMEQKGIH-PDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRIPDE 609
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
YT +IG Y + G I A+ M C P+ + ++ LI G+ +
Sbjct: 610 FTYTTLIGGYAKQGNISGALSLLCDMMKRRCQPNVVAYSSLINGYCKLGDTD 661
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD ++Y+ +I L K K + A L E+ ++ + PD VYT +I +++ +D+A +
Sbjct: 502 PDANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKI 561
Query: 186 YETMKASGCTPHKLTFTILIRN 207
+E M+ G P + + +I+
Sbjct: 562 FEFMEQKGIHPDVVGYNAMIKG 583
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + Y ++ LG+ + L E+++ L P+ ++Y +I + +A+
Sbjct: 327 PTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRLPPNVQIYNSVIDALCKCRSASQALVV 386
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ M A GC P +TF+ LI L G
Sbjct: 387 LKQMFAGGCDPDAITFSTLISGLCQEG 413
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ YS +I K AE LF ++ +GL P+ YT +IG + + +A
Sbjct: 641 QPNVVAYSSLINGYCKLGDTDAAECLFGSMESQGLFPNVITYTILIGSLFKKDKVVRAAM 700
Query: 185 TYETMKASGCTPHKLTFTILIRNLENA 211
+E M + C+P+ T L+ L N+
Sbjct: 701 YFEYMLLNQCSPNDYTLHSLVTGLCNS 727
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD +S +I L + ++ AE L E + L+P+ YT +I + G + A
Sbjct: 397 PDAITFSTLISGLCQEGRVQEAERLLRETTRWELNPNLSSYTSLIHGFCVRGEVIVASNL 456
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
M G TP +TF LI L AG+
Sbjct: 457 LVEMMERGHTPDVVTFGALIHGLVVAGQ 484
>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
Length = 667
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 7/122 (5%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L +Q+ LD A ++F+ + + + PD+ ++ +I K ++ E+FCE+ + G+
Sbjct: 549 LCKQSRLDEATQMFDSMGSK-GFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVA 607
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA--GEEELVAA 219
+ Y +I + QVG I+ A++ ++ M +SG P TI IRN+ +EEL A
Sbjct: 608 NAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPD----TITIRNMLTGLWSKEELKRA 663
Query: 220 VR 221
V+
Sbjct: 664 VQ 665
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ Y+ +I L + + AEEL+ E+ GL PDT Y +I + +D+A +
Sbjct: 501 EPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQ 560
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+++M + G +P +TFT LI G
Sbjct: 561 MFDSMGSKGFSPDVVTFTTLINGYCKVG 588
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ +S +I L K + AEEL+ E+ G+ P+T Y MI + + +D A
Sbjct: 316 PDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERM 375
Query: 186 YETMKASGCTPHKLTFTILI 205
+ M GC+P +TF+ILI
Sbjct: 376 FYLMATKGCSPDVITFSILI 395
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+QN LD A ++F ++ PD+ +S +I K++ +L E+ + GL +T
Sbjct: 365 KQNRLDAAERMF-YLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANT 423
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
YT +I + Q+G ++ A++ + M +SG P+ +T L+ L N G+
Sbjct: 424 ITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGK 473
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 47/107 (43%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ +I L K ++ A ++F + +G PD +T +I Y +VG + +E
Sbjct: 537 PDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEV 596
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
+ M G + +T+ LI G + ++ I +P+
Sbjct: 597 FCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPD 643
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ +YS +I L K+ + A+ LF E++++G+ P+ Y MI + G +A
Sbjct: 245 KPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQR 304
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
M +P +TF++LI L G+
Sbjct: 305 LLREMFERKMSPDVVTFSVLINALVKEGK 333
>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group]
Length = 1080
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 79/158 (50%), Gaps = 16/158 (10%)
Query: 67 VHAMKLAKSSSKLEEGFQSRICRLLKADL------LDTLTELRRQNELDLALKVFNFVRK 120
++ ++A ++ K+ FQ + + + D+ +DTL + +L+ L F +
Sbjct: 902 LNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLC---KAGQLNDGLTYFRQLL- 957
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E+ +PDL Y+ +I LGK+K++ A LF E++K+G+ P+ Y +I L +G
Sbjct: 958 EMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLI---LHLGKAG 1014
Query: 181 KAMET---YETMKASGCTPHKLTFTILIRNLENAGEEE 215
KA E YE + G P+ T+ LIR +G +
Sbjct: 1015 KAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTD 1052
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L + +R E A+ +FN ++K+ P+L Y+ +IL LGK + A A +++ EL
Sbjct: 971 LIDGLGKSKRLEE---AVSLFNEMQKK-GIVPNLYTYNSLILHLGKAGKAAEAGKMYEEL 1026
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+G P+ Y +I Y G D A Y M GC P+ T+ L L
Sbjct: 1027 LTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSSTYMQLPNQL 1080
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ + ++ L K+ ++ MA+ +F ELK G+ PDT YT MI + D+A++
Sbjct: 438 PDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKI 497
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ M + C P L LI L AG
Sbjct: 498 FYDMIENNCVPDVLAVNSLIDTLYKAG 524
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + YS +++ GK + + L E++ G+ P+ YT I V Q D+A
Sbjct: 193 PSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRI 252
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
M+ GC P +T T+LI+ L +AG
Sbjct: 253 LAKMENEGCKPDVITHTVLIQVLCDAG 279
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ Y+ I +LG+ K+ A + +++ EG PD +T +I V G I A +
Sbjct: 227 KPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKD 286
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
+ MK S P ++T+ L+ + G+ + V
Sbjct: 287 VFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSV 319
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD Y ++ G N E++ +K +G + + YT +I QVG + +A+E
Sbjct: 297 KPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALE 356
Query: 185 TYETMKASGCTPHKLTFTILIRNLENA 211
++ MK G P + ++ LI A
Sbjct: 357 MFDEMKQKGIVPEQYSYNSLISGFLKA 383
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 9/109 (8%)
Query: 121 EVW-------YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY 173
E+W Y ++ Y+ +I L + ++ A E+F E+K++G+ P+ Y +I +
Sbjct: 321 EIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGF 380
Query: 174 LQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
L+ A+E ++ M G P+ T + I +GE + A++R
Sbjct: 381 LKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGES--IKAIQR 427
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+DTL + R +E A ++F + KE+ +P Y+ ++ LG+ ++ L E+
Sbjct: 516 LIDTLYKAGRGDE---AWRIF-YQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEM 571
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
P+ Y ++ + G ++ A++ +M GC P ++ +I L
Sbjct: 572 YHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGL 625
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ ++ +I +L +I+ A+++F ++KK PD Y ++ + G ME
Sbjct: 262 KPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVME 321
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ MKA G + + +T +I L G
Sbjct: 322 IWNAMKADGYNDNVVAYTAVIDALCQVG 349
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
++D L ++ R E AL++F+ ++++ P+ Y+ +I K + A ELF +
Sbjct: 341 VIDALCQVGRVFE---ALEMFDEMKQK-GIVPEQYSYNSLISGFLKADRFGDALELFKHM 396
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
G P+ + I Y + G KA++ YE MK+ G P + ++ L +G
Sbjct: 397 DIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSG 454
Score = 37.0 bits (84), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ P Y ++ L K +I AE LF E+ + G + +Y ++ + G +K
Sbjct: 856 FSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVC 915
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGE 213
++ M G P ++TI+I L AG+
Sbjct: 916 HLFQDMVDQGINPDIKSYTIIIDTLCKAGQ 945
>gi|297791089|ref|XP_002863429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297309264|gb|EFH39688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 472
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 9/132 (6%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAE-ELFCELKKE 157
L L +N+L+LA K + +R E+ P ++ + +I L +N A ++F E+ K
Sbjct: 128 LAILVEENQLNLAFKFYKNMR-EIGLPPTVASLNVLIKALCRNDGTVDAGLKIFHEMPKR 186
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
G DPD+ Y +I + G ID+A + + M C P +T+T LI L G + +
Sbjct: 187 GCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGL--CGSKNVD 244
Query: 218 AAVRRDCIQYVE 229
A+R YVE
Sbjct: 245 EAMR-----YVE 251
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Query: 99 LTELRRQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
++ L R +D A K+F V K+ P + Y+ +I L +K + A E+K +
Sbjct: 199 ISGLCRFGRIDEAKKLFTEMVEKDC--APTVVTYTSLINGLCGSKNVDEAMRYVEEMKGK 256
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
G++P+ Y+ ++ + G +AME +E M A GC P+ +T+T LI L
Sbjct: 257 GIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGL 307
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Query: 103 RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
R +D LK+F+ + K PD Y +I L + +I A++LF E+ ++ P
Sbjct: 168 RNDGTVDAGLKIFHEMPKR-GCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPT 226
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
YT +I +D+AM E MK G P+ T++ L+ L G
Sbjct: 227 VVTYTSLINGLCGSKNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDG 276
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ +I L K ++I A EL + +GL PD +Y ++I + V +A
Sbjct: 294 RPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAVSKFREAAN 353
Query: 185 TYETMKASGCTPHKLTFTILIR 206
+ M G TP++LT+ I ++
Sbjct: 354 FLDEMILGGITPNRLTWNIHVK 375
>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Cucumis sativus]
Length = 748
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ +I G+ ++ + LF E+ GL PD YT +I VY + G + A
Sbjct: 396 PDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSL 455
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRRDCIQ 226
+ M G TP+ +T+ LI L GE EL+ +R+ +Q
Sbjct: 456 HNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQ 500
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + ELD A ++ + +RK+ + ++ +Y+ M+ + K I A +L E++ G+DP
Sbjct: 478 LCKHGELDTANELLDEMRKK-GLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDP 536
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
D YT +I Y ++G IDKA + + M G P +TF +L+
Sbjct: 537 DAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGF 583
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP+ Y+ +IL+L K + AE++ E+ + + PD VYT +I + ++G + A +
Sbjct: 325 KPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANK 384
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
++ M + +P +T+T LI+ G+
Sbjct: 385 WFDEMLSKKISPDYITYTTLIQGFGQGGK 413
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD +Y+ +I K + A + F E+ + + PD YT +I + Q G + +
Sbjct: 361 PDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNL 420
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+ M + G P ++T+T LI AGE
Sbjct: 421 FHEMISRGLKPDEVTYTTLIDVYCKAGE 448
>gi|15231160|ref|NP_187922.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75311241|sp|Q9LK58.1|PP225_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g13150
gi|10172602|dbj|BAB01406.1| unnamed protein product [Arabidopsis thaliana]
gi|66792658|gb|AAY56431.1| At3g13150 [Arabidopsis thaliana]
gi|332641781|gb|AEE75302.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 551
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 19/160 (11%)
Query: 87 ICRLLKADLLDTLTELRRQNELDLALKVFN-----FVRKE-------VW-------YKPD 127
+CR D + ++ E +N + L FN F R+E +W P+
Sbjct: 203 LCRKGSMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPN 262
Query: 128 LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYE 187
+ Y+ + L +NK+ A L +K EG+ PD Y +I Y +++ M+ Y
Sbjct: 263 IRSYNSRVRGLTRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYN 322
Query: 188 TMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227
MK G TP +T+ +LI L G+ + V + I++
Sbjct: 323 EMKEKGLTPDTVTYCMLIPLLCKKGDLDRAVEVSEEAIKH 362
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 51/102 (50%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
+LD A+K F + +++ PDL Y+ MI L + + +F EL+K G +PD +
Sbjct: 172 KLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDILSIFEELEKNGFEPDLISF 231
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
++ + + + + ++ MK+ +P+ ++ +R L
Sbjct: 232 NTLLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNSRVRGL 273
>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 677
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 47/85 (55%)
Query: 122 VWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDK 181
+ PD + Y+ +++ +N A+++F ++ G+ PD ++ +IGV + G +D+
Sbjct: 284 IGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQ 343
Query: 182 AMETYETMKASGCTPHKLTFTILIR 206
A+ + MK SG P + +TILI
Sbjct: 344 ALMYFRDMKTSGLVPDNVIYTILIN 368
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL +S +I + +N + A F ++K GL PD +YT +I Y + GM+ +A+E
Sbjct: 323 PDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEI 382
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ M GC + + ++ L
Sbjct: 383 RDKMLEQGCALDVVAYNTILNGL 405
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ Y+ ++ L K K +A A LF E+ + G+ PD +T +I + + G + KA+ +
Sbjct: 394 DVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLF 453
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
M P +T+ ILI E E + + I FP
Sbjct: 454 GIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPN 499
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 118 VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177
+RK + KP L + +I ++ ++ A+E ++ EG+ PD+ Y +I +++
Sbjct: 527 IRKGI--KPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGE 584
Query: 178 MIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPER 233
+DKA M+ G P +T+ +++ G + + R I+ P+R
Sbjct: 585 YMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDR 640
>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Vitis vinifera]
Length = 819
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 8/128 (6%)
Query: 111 ALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
A + F+ V +E+ P L Y+ +I L K ++ AE L E+ ++GL D Y +
Sbjct: 551 AFRFFDEMVAREIV--PTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSL 608
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAA--VRRDCIQY 227
I Y G + KA+E YETMK SG P T R + G+E LV + ++ +Q
Sbjct: 609 ISGYSSAGNVQKALELYETMKKSGIKP---TLNTYHRLIAGCGKEGLVLVEKIYQEMLQM 665
Query: 228 VEFPERFL 235
P+R +
Sbjct: 666 NLVPDRVI 673
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL+++ ++K KP L+ Y +I GK + + + E+++ E+ + L PD +Y +I
Sbjct: 621 ALELYETMKKS-GIKPTLNTYHRLIAGCGK-EGLVLVEKIYQEMLQMNLVPDRVIYNALI 678
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y++ G + KA + M+A G P K+T+ LI
Sbjct: 679 HCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLI 713
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + +Y+ +I L K K++ AE+LF E+ + P+ Y +I Y +VG +++A
Sbjct: 215 PGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNI 274
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERF 234
E MK P +TF L+ L A E V + Y P+RF
Sbjct: 275 RERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRF 323
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 131 YSDMILM--LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYET 188
Y+ IL+ L K + AEE+ + + GL P + ++ Y QVG I+KA T E
Sbjct: 358 YTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEK 417
Query: 189 MKASGCTPHKLTFTILIR 206
M+A G P+ +T+ L++
Sbjct: 418 MEAVGLRPNHVTYNSLVK 435
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ Y +I L K+ I AE + ++ G+ P+ ++Y +I G + A
Sbjct: 494 KPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFR 553
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRRDCIQY 227
++ M A P +T+ ILI L G+ E L + + R + +
Sbjct: 554 FFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSF 600
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 149 ELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+LF E+ + GL PD +Y + I +++G + +A+E MK G +P + ++I L
Sbjct: 168 QLFSEIVESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGL 227
>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
Length = 440
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 7/131 (5%)
Query: 79 LEEGFQSRICRLLKADLLDTLT-ELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILM 137
+++GF + + + L+ L ELR +E ALK+F V K+ Y+P++ Y+ +I
Sbjct: 139 VDKGFSPNV--ITYSTLISGLCRELRGVSE---ALKLFGSVLKQ-GYEPEVPTYNILIDG 192
Query: 138 LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH 197
L K ++ A ELF L K GL+PD YT I + G ++ A+ + M GC P
Sbjct: 193 LLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPD 252
Query: 198 KLTFTILIRNL 208
++ +I L
Sbjct: 253 VVSHNAVINGL 263
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L + R++ + A+ +F+ + E PD+ YS +I LGK ++ A L +
Sbjct: 329 LVDGLCKARQEGRIKEAITLFDAM-IEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAM 387
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ +G P+ Y +I + +D+A+E + M GC P +T+ +I
Sbjct: 388 EAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTITYGTII 438
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 124 YKPDLSLYSDMILMLGKN-KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKA 182
+ P++ YS +I L + + ++ A +LF + K+G +P+ Y +I L+ +++A
Sbjct: 143 FSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEA 202
Query: 183 METYETMKASGCTPHKLTFTILIRNLENAGEEE 215
E + + G P +T+T+ I L AG E
Sbjct: 203 FELFSGLVKHGLEPDAITYTVFIDGLCKAGRVE 235
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 125 KPDLSLYSDMILMLGKNKQ---IAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDK 181
KP + Y+ ++ L K +Q I A LF + ++G PD Y+ +I + G +D
Sbjct: 320 KPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDD 379
Query: 182 AMETYETMKASGCTPHKLTFTILIR---NLENAGE--EELVAAVRRDCI 225
A M+A GC P+ T+ LI LE E E VA V + C+
Sbjct: 380 ARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCV 428
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ ++ +I L K K++ AE L ++ +G P+ + +I + G KAM T
Sbjct: 251 PDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTT 310
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEE 214
++ M G P +T+ IL+ L A +E
Sbjct: 311 FKEMLKRGVKPTVVTYNILVDGLCKARQE 339
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ ELD ALK+F+ K + PD+ Y+ +I K ++ A+ + + E L PD
Sbjct: 57 KVGELDEALKIFDGAVKR-GFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDV 115
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
Y ++ + G +D E + G +P+ +T++ LI L
Sbjct: 116 VTYNSLVNGLCKNGRVD---EARMLIVDKGFSPNVITYSTLISGL 157
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 42/85 (49%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ P+ Y+ ++ L +++ A+ L+ + K G PD Y ++ + +VG +D+A+
Sbjct: 6 FWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEAL 65
Query: 184 ETYETMKASGCTPHKLTFTILIRNL 208
+ ++ G P +T+ LI
Sbjct: 66 KIFDGAVKRGFVPDVVTYNALINGF 90
Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 39/89 (43%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y PD+ Y+ ++ K ++ A ++F K G PD Y +I + + +D+A
Sbjct: 41 YSPDVVTYNTLLHGFCKVGELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQ 100
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAG 212
+ M + P +T+ L+ L G
Sbjct: 101 RILQRMVSENLVPDVVTYNSLVNGLCKNG 129
>gi|410109893|gb|AFV61026.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
fucata]
Length = 414
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 50/89 (56%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ YS +I L K +I A ELF E+ +GL P++ +T +I + + G +D AME
Sbjct: 192 QPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAME 251
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
Y+ M + +P +T+ LI L G+
Sbjct: 252 IYKQMLSQSLSPDLITYNTLIYGLCKKGD 280
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E Y L ++ ++ K+ I +A+ +F + K GL P Y ++ Y+++G +D
Sbjct: 118 ECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 177
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNL 208
+ M ASG P T+++LI L
Sbjct: 178 EGFRLKSAMLASGVQPDVYTYSVLINGL 205
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ +DLA++++ + + PDL Y+ +I L K + A L E+ +GL PD
Sbjct: 242 KNGRVDLAMEIYKQMLSQS-LSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDK 300
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
YT +I + G +D A E + M + +T LI L G
Sbjct: 301 ITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREG 349
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D +Y+ +I L + AE++ E+ GL PD R YT +I + + G + K +
Sbjct: 334 DDVVYTALISGLCREGXSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLL 393
Query: 187 ETMKASGCTPHKLTFTILIRN 207
+ M+ G P +T+ +L+
Sbjct: 394 KEMQRDGHVPSVVTYNVLMNG 414
Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 3/120 (2%)
Query: 104 RQNELDLALKVFNFVRKEVW-YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
+ ++ +A VF+ + K W +P + Y+ ++ + + L + G+ PD
Sbjct: 137 KDGDIRIAQSVFDAITK--WGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPD 194
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
Y+ +I + ID A E ++ M G P+ +TFT LI G +L + +
Sbjct: 195 VYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYK 254
>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 630
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ +I L K++++ A +L ++ EGL PD Y M+ + + G I KA + +TM
Sbjct: 387 YNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTMT 446
Query: 191 ASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
++GC P +T+ LI L AG E+ + + R
Sbjct: 447 SNGCEPDIVTYGTLIGGLCKAGRVEVASRLLR 478
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 39/152 (25%)
Query: 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK------------ 140
A LLDTL RRQN+ AL++ ++ K+ ++P+ S+Y +++ LGK
Sbjct: 55 AQLLDTL---RRQNDETAALRLLSWASKQPNFRPNSSIYEEILRKLGKVGSFNSMKDILQ 111
Query: 141 --------------------NKQIAMAEELFCELK----KEGLDPDTRVYTEMIGVYLQV 176
+ + EE+ C ++ + GL DT +Y ++ V +
Sbjct: 112 EMKGLDCQIDRGVLLIFIDSYAKFELYEEILCIVEVMEVEFGLALDTLLYNFLLNVLVDG 171
Query: 177 GMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ + TM + G P TF ILI+ L
Sbjct: 172 NKLKLVENVHSTMVSKGIKPDVSTFNILIKAL 203
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+S ++ +I L K QI A + E+ GL PD + +T ++ +++ G +D A
Sbjct: 190 KPDVSTFNILIKALCKAHQIRPAILVMEEMSSYGLVPDEKTFTTLMQGFIEEGNMDGAFR 249
Query: 185 TYETMKASGC 194
E M +GC
Sbjct: 250 VKEQMLDAGC 259
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ Y +I L K ++ +A L ++ +G+ Y +I + +AM
Sbjct: 451 EPDIVTYGTLIGGLCKAGRVEVASRLLRSIQLKGMVLTPHAYNPVIQALFKRKRTKEAMR 510
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ M+ G TP T+ I+ R L N+G
Sbjct: 511 LFREMEEKGNTPDAFTYKIVFRGLSNSG 538
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 145 AMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTIL 204
MA EL+ E+K +G PD Y +I G + +A+ M+ SGC + +T+ L
Sbjct: 296 TMAIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTL 355
Query: 205 I 205
I
Sbjct: 356 I 356
>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
Length = 556
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
+D A+ +FN +R + D+ LYS +I L K+ +I+ A ELF + +G P+ Y
Sbjct: 380 IDEAVSLFNEMRCKNMVL-DIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYN 438
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
+I + ++ ID +E ++ M G TP LT+ ILI
Sbjct: 439 ILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYNILIN 477
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ +Y+ +I K++ A +L+ ++ G+DPD YT +I + + G + +
Sbjct: 221 KPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQ 280
Query: 185 TYETMKASGCTPHKLTFTILI 205
M P+ TF +LI
Sbjct: 281 LMCEMVNKNINPNVYTFNVLI 301
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
DL LK+ ++ PD+ Y+ +I + Q ++L CE+ + ++P+ +
Sbjct: 245 DLYLKIV-----DMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNV 299
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+I + + G + +A + M G P +TF LI
Sbjct: 300 LIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLI 336
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 90 LLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEE 149
+L + L+D L + R + A ++F+ + + P++ Y+ +I K + I M E
Sbjct: 400 VLYSSLIDGLCKSGR---ISYAWELFSTINND-GPPPNVITYNILIDAFCKIQDIDMGIE 455
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209
LF + +GL P Y +I Y + I +AM M++ P +T+ L L
Sbjct: 456 LFKLMCGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGLC 515
Query: 210 NAG 212
+G
Sbjct: 516 KSG 518
>gi|357445513|ref|XP_003593034.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482082|gb|AES63285.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 361
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 55/107 (51%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
D AL +F +R++ DL Y+ ++ +LG+ ++ ++F LK+ G PDT Y
Sbjct: 189 DSALAIFEHLREQNNSCLDLITYNIVLDILGRKGRVDEMLDMFASLKETGFVPDTISYNT 248
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+I +VG D E ++ MK +G P LT+T LI AG E
Sbjct: 249 LINGLRKVGRSDMCFEYFKEMKENGNEPDLLTYTALIDISGRAGNIE 295
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R+ +D L +F + KE + PD Y+ +I L K + M E F E+K+ G +P
Sbjct: 218 LGRKGRVDEMLDMFASL-KETGFVPDTISYNTLINGLRKVGRSDMCFEYFKEMKENGNEP 276
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
D YT +I + + G I+++++ + MK G P + LI NL EL
Sbjct: 277 DLLTYTALIDISGRAGNIEESLKFFMEMKLKGILPSIQIYRSLIHNLNKTENIEL 331
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
LR+ D+ + F + KE +PDL Y+ +I + G+ I + + F E+K +G+ P
Sbjct: 253 LRKVGRSDMCFEYFKEM-KENGNEPDLLTYTALIDISGRAGNIEESLKFFMEMKLKGILP 311
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASG 193
++Y +I + I+ A E E M +S
Sbjct: 312 SIQIYRSLIHNLNKTENIELATELLEEMNSSS 343
>gi|255660900|gb|ACU25619.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
Length = 481
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ I + K++ AE+ F E+K ++P YT +I Y+ V +D A+
Sbjct: 183 PDVVTYNTXINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDXALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L NA
Sbjct: 243 VEEMKGFGIKPNAITYSTLLPGLCNA 268
>gi|413934891|gb|AFW69442.1| hypothetical protein ZEAMMB73_914225 [Zea mays]
Length = 507
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 52/96 (54%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+EV + D+ +YS +I GK Q+A A +F +++ EG+ PD + +I + +VG +
Sbjct: 220 QEVGVELDVKIYSGLIDTFGKYGQLADARRMFDKMRAEGVRPDISTWNALIQWHCRVGNM 279
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+A+ + +M+ G P F ++I L G+ +
Sbjct: 280 KRALRFFTSMQEEGMYPDPKIFVMIISRLGEQGKWD 315
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 42/80 (52%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D + YS ++ + N A +L E+++ G++ D ++Y+ +I + + G + A +
Sbjct: 192 DTAGYSMLVRLYRDNGMWKKATDLVMEMQEVGVELDVKIYSGLIDTFGKYGQLADARRMF 251
Query: 187 ETMKASGCTPHKLTFTILIR 206
+ M+A G P T+ LI+
Sbjct: 252 DKMRAEGVRPDISTWNALIQ 271
>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 804
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Query: 117 FVRKEVWY--------KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
F +VWY KPD+ LY+ M+ L K + A L E+ + GL PDT Y
Sbjct: 317 FEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYNA 376
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+I Y +G++D+A + + + C T+TILI + +G
Sbjct: 377 LIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYTILICGMCRSG 420
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 83/180 (46%), Gaps = 21/180 (11%)
Query: 34 KKIQALTVTCGLRDANK-KPMWRSRVLSSEAIQ---AVHAMKLAKSSSKLEEGFQSRICR 89
KK+++L LR+ ++ KP W+ + A+ + + + S + +E +S++
Sbjct: 2 KKLRSL-----LREISRAKPPWKQHFHTYSAVDFAISNEVLTIIDSVNPIEPALESKV-P 55
Query: 90 LLKADLLDTLTELRRQNELDLALKVF----NFVRKEVWYKPDLSLYSDMILMLGKNKQIA 145
L ++ + + N L L + F F R W ++ +I ML K+
Sbjct: 56 FLSPSIVTYIIK-NPPNSL-LGFRFFIWASKFRRLRSWVSHNM-----IIDMLIKDNGFE 108
Query: 146 MAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ ++ E+K+ G +T +I Y ++ MI+KA+E++E MK C P T+ ++
Sbjct: 109 LYWQVLKEIKRCGFSISADAFTVLIQAYAKMDMIEKAVESFEMMKDFDCKPDVFTYNTVL 168
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 110 LALKVFNFVRK--EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
L LK +N + + + + P++ Y+ +I K I A +LF EL+ +GL PD+ Y
Sbjct: 504 LILKAYNILMQLTDSGFAPNIITYNILIHGFCKAGNINGAFKLFKELQLKGLSPDSVTYG 563
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTP 196
+I L + A + + +GCTP
Sbjct: 564 TLINGLLSANREEDAFTVLDQILKNGCTP 592
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+ + LAL ++N + K + P+++ +S +I + K+ + A ++F E+ + + P+
Sbjct: 173 RKEVVLLALGIYNRMLK-LNCLPNIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPNK 231
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
YT +I Q D A + MK GC P +T+ L+ G
Sbjct: 232 ITYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDSVTYNALLHGFCKLG 280
>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 63/113 (55%), Gaps = 2/113 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A+K+F + K +K ++ + +I L K ++ A ELF +L EG +P+ YT MI
Sbjct: 444 AMKLFTEL-KSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMI 502
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL-ENAGEEELVAAVRR 222
+ + G +DKA + M+A+GCTP +T+ L+R E+ EE+V + R
Sbjct: 503 HGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHR 555
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ ++ +I L K ++ A++L + + G+ PD Y +I + VG ++ A E
Sbjct: 282 QPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARE 341
Query: 185 TYETMKASGCTPHKLTFTILIR 206
+ +M + GC P +++ +LI
Sbjct: 342 LFVSMPSKGCEPDVISYNVLIN 363
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 12/140 (8%)
Query: 82 GFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141
G S C L LL+ L + R E F + + Y P++ Y+ +I L
Sbjct: 99 GLSSDRCTL--NILLNCLCNVNRLRE---GFAAFAGILRR-GYSPNIVTYNTLIKGLCME 152
Query: 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS------GCT 195
+I+ A LF ++K G PD Y +I G I+ A++ ++ M C
Sbjct: 153 HRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCK 212
Query: 196 PHKLTFTILIRNLENAGEEE 215
P+ +T+ I++ L G E+
Sbjct: 213 PNVITYNIIVDGLCKVGRED 232
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL Y+ +I + A ELF + +G +PD Y +I Y + +++AM+
Sbjct: 318 PDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKL 377
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
Y M G P+ +T+ L++ + AG+
Sbjct: 378 YNEMLLVGKRPNVITYDSLLKGIFLAGK 405
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 107 ELDLALKVF-----NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
+++ALK+ + R E+ KP++ Y+ ++ L K + A++LF E+K +G+ P
Sbjct: 189 NINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIP 248
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
Y +I + G +++ + M G P +TF +LI L G+
Sbjct: 249 SIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGK 300
>gi|255559961|ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539836|gb|EEF41416.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 628
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL VF + + + ++++++ +I + +++++ +A ELF L E L PD YT MI
Sbjct: 475 ALDVF-YGLENCKFASNVAIFNSLINGMCRSEKLEIAWELFNRLCNEALQPDVVTYTIMI 533
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+VG KA + + M+ GC P+ +TF L+R L
Sbjct: 534 YGLCKVGQPQKAYDLFLEMEEKGCAPNVVTFNTLMRGL 571
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP + YS +I L K+ + A+E F E+K++G+ P+ YT ++ ++A
Sbjct: 250 KPTVVSYSCIIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWEEAKR 309
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
+ M G P +TF++LI L G+
Sbjct: 310 LFIEMVDHGLLPDVVTFSVLIGALCKVGK 338
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE P++ Y+ ++ L + A+ LF E+ GL PD ++ +IG +VG +
Sbjct: 280 KEKGIFPNVVTYTSLLHGLCSASEWEEAKRLFIEMVDHGLLPDVVTFSVLIGALCKVGKV 339
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+A ++ M P T+ ILI AG
Sbjct: 340 KEASGLFDLMVQRYVEPSTRTYNILIEGYCLAG 372
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ +S +I L K ++ A LF + + ++P TR Y +I Y GM+D+ +
Sbjct: 321 PDVVTFSVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNILIEGYCLAGMVDEGKKI 380
Query: 186 YETMKASGCTPHKLTFTILIR 206
+ +M C +++IL++
Sbjct: 381 FLSMVNKRCQHDAGSYSILMK 401
>gi|255660816|gb|ACU25577.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
Length = 418
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R +LD ++ N ++ +PD+ YS +I L K ++ A ELF E+ GL P+
Sbjct: 183 RLGDLDEGFRLKNAMQAS-GVQPDVYTYSVLINGLCKESKMDYANELFNEMLDNGLVPNG 241
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+T +I + + G +D AME Y+ M + +P +T+ LI L G+
Sbjct: 242 VTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 291
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E Y L ++ ++ K +I +A+ +F + K GL P + ++ Y+++G +D
Sbjct: 129 ECGYPASLYFFNILMHRFCKEGEIKLAQSVFDAITKWGLRPTAVSFNTLMNGYIRLGDLD 188
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNL 208
+ M+ASG P T+++LI L
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGL 216
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ +DLA++++ + + PDL Y+ +I L K + A++L E+ +GL PD
Sbjct: 253 KNGRVDLAMEIYKQMLSQSL-SPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDK 311
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
YT +I + G ++ A E + M + +T LI L G
Sbjct: 312 VTYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEG 360
>gi|224135613|ref|XP_002322117.1| predicted protein [Populus trichocarpa]
gi|222869113|gb|EEF06244.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L +L++ + L +F+F+ K PD+++Y+ +I M + + A LF +
Sbjct: 593 LIDGLCKLKKSSA---GLCIFDFMCKNA-VAPDIAIYNVLINMHSREGHLEAALGLFVHV 648
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ G PD + MI Y +D A++ + M + P+ +TFTILI
Sbjct: 649 VERGPKPDVFTFNTMICCYCNFKRLDDAVQLFAKMTSEQLRPNAITFTILI 699
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 16/111 (14%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
Q L + N + K +W + D I +A++ F + + G P+
Sbjct: 265 QGGFGLDIITCNKILKGIWMQND----------------IGVADDYFNMVVRIGPKPNVV 308
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ +I Y + G +DKA ++ M +G TP + ++ILI L AG E
Sbjct: 309 TFSTLIDAYCKEGNLDKAFVLFDVMAGNGVTPDLIVYSILIDGLFKAGRLE 359
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+ L+ AL +F V E KPD+ ++ MI K++ A +LF ++ E L P+
Sbjct: 634 REGHLEAALGLFVHV-VERGPKPDVFTFNTMICCYCNFKRLDDAVQLFAKMTSEQLRPNA 692
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN 207
+T +I + + G +D AM + M G P+ +T++ LI
Sbjct: 693 ITFTILIDAFCREGRMDDAMLMFSKMLEEGPEPNLVTYSCLIHG 736
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 11/145 (7%)
Query: 76 SSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYK--------PD 127
+ +LE+G + + L K LD + + +D +K+ + R YK P+
Sbjct: 355 AGRLEDGQRLLLVALDKGIKLDVVG---FSSAMDAYVKIGDLGRVIQIYKRMLNEGISPN 411
Query: 128 LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYE 187
+ S +I +N +I A LF ++ K G +P Y+ +I + + G + YE
Sbjct: 412 VVSCSILIKGFCQNGRILEACGLFVQILKLGFEPSILTYSALIAGFCKSGNLRDGFYLYE 471
Query: 188 TMKASGCTPHKLTFTILIRNLENAG 212
M C P + +++LI L G
Sbjct: 472 DMIKKRCEPDTIVYSVLINGLCKQG 496
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
++ LD A +F+ V PDL +YS +I L K ++ + L +G+ D
Sbjct: 319 KEGNLDKAFVLFD-VMAGNGVTPDLIVYSILIDGLFKAGRLEDGQRLLLVALDKGIKLDV 377
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
++ + Y+++G + + ++ Y+ M G +P+ ++ +ILI+ G
Sbjct: 378 VGFSSAMDAYVKIGDLGRVIQIYKRMLNEGISPNVVSCSILIKGFCQNG 426
Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELF-CELKKEGLD 160
+ Q+ ++ LK++N + E P++ YS +I L K + A F C L K L
Sbjct: 738 FKSQSMMESGLKLYNEML-ENNIAPNIVSYSILIDGLCKRGLMKEASCAFRCALDKH-LL 795
Query: 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK-LTFTILIRNLENAGEEELVA 218
PD YT +I Y +VG + +AM Y+ M + TP + L T+ L+ AG + L A
Sbjct: 796 PDVIAYTILIRGYCKVGRLTEAMMLYDNMLLNRLTPDRFLERTLEEYQLKKAGAKHLCA 854
>gi|440804730|gb|ELR25603.1| pentatricopeptide repeat domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 642
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L +D A + F+ + ++ PD +S +I LG ++A AE F +++K G
Sbjct: 215 INALGNAGRVDDAERCFDAM-DQLGVVPDAHCFSTLIAALGTAGRVAEAERHFAKMEKLG 273
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ PD ++ ++ + G +D A + + + G P + F LI +AG +
Sbjct: 274 VVPDLHCFSTLMSALTKAGKVDAAQHVFHQIASRGLKPDLVCFNALISGFADAGRAD 330
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R + + A+++ + + + P+L + S ++ +LG+ +Q A L E+++ GL P
Sbjct: 114 LARTRQWETAVELVELMPRH-GHTPNLFVISGLLKVLGQARQPDNAHYL-AEIERRGLTP 171
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
D+ ++ +I G D+A + M G P+ F+ LI L NAG
Sbjct: 172 DSHCFSALITALGGAGRADEAERYFARMTQLGLAPNLHCFSALINALGNAG 222
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 117 FVR-KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175
F R ++ P+L +S +I LG ++ AE F + + G+ PD ++ +I
Sbjct: 196 FARMTQLGLAPNLHCFSALINALGNAGRVDDAERCFDAMDQLGVVPDAHCFSTLIAALGT 255
Query: 176 VGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
G + +A + M+ G P F+ L+ L AG+
Sbjct: 256 AGRVAEAERHFAKMEKLGVVPDLHCFSTLMSALTKAGK 293
Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL +S ++ L K ++ A+ +F ++ GL PD + +I + G D+A
Sbjct: 276 PDLHCFSTLMSALTKAGKVDAAQHVFHQIASRGLKPDLVCFNALISGFADAGRADEAEHW 335
Query: 186 YETMKASG-CTPHKLTFTILIRNLE 209
+ + +G P +++++ LI+ E
Sbjct: 336 FAKITTTGRLKPDRISYSALIQANE 360
>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
Length = 577
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 69/128 (53%), Gaps = 10/128 (7%)
Query: 89 RLLKADLL--DTLTE-LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIA 145
R +K D+L TL + L R+ +D AL+ F + +E P++ Y+ ++ L K +I
Sbjct: 28 RGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEEC--SPNVITYNTVVNGLCKANRID 85
Query: 146 MAEELFCELKK-----EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT 200
ELF +++K G +PD Y+ +I + +DKA E ++ M+A GC P+ +T
Sbjct: 86 EGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVT 145
Query: 201 FTILIRNL 208
++ LI L
Sbjct: 146 YSSLIDGL 153
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 3/128 (2%)
Query: 95 LLDTLTELRRQNELDLALKVF-NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
+LD + E+ + E D A++V V K V +PD + Y ++ L ++ A F +
Sbjct: 445 VLDNVVEICKAGEPDEAVEVIEQMVLKGV--RPDEATYVAVLRSLCGLDRVDSAIAEFEK 502
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ G P YT +IG M D A +E M A+G TP T L L +AG
Sbjct: 503 MASRGCAPGLVTYTLLIGEACSADMADDAFRIFEAMVAAGFTPQAQTMRTLSSCLRDAGY 562
Query: 214 EELVAAVR 221
++L+ R
Sbjct: 563 QDLLVRQR 570
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
Query: 80 EEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
E+GF I D L L + +E + A + F + K KP++ Y+ + L
Sbjct: 206 EKGFGINI-----IDFNAMLHALWKNDEQEKACQFFERLLKS-GKKPNVVTYNVAVHGLC 259
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
K ++ A + E+ + + PD Y+ +I + + G +DKA + + M C PH +
Sbjct: 260 KAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPV 319
Query: 200 TFTILIRNL 208
TF L+
Sbjct: 320 TFMTLLHGF 328
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM 189
+Y+ +I K Q+ A EL E+K+ G+ D +++ +I + G ID+A+E +++M
Sbjct: 1 MYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM 60
Query: 190 KASGCTPHKLTFTILIRNLENA 211
C+P+ +T+ ++ L A
Sbjct: 61 -GEECSPNVITYNTVVNGLCKA 81
>gi|255548349|ref|XP_002515231.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545711|gb|EEF47215.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 505
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E+ KPD+ Y+ +I + K++++ A ++ ++++E + PD YT +IG VG
Sbjct: 234 RELGIKPDVVSYNSLIDVYCKDREMEKAYKVVEKMREEDISPDVITYTSIIGGLGLVGQP 293
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRN 207
DKA + MK GC P + +IRN
Sbjct: 294 DKARDILNEMKEYGCYPDVAAYNAVIRN 321
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 5/122 (4%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A V++ ++KE +KP+L ++ ++L KQ AE F E+++ G+ PD Y +I
Sbjct: 195 ARNVYHRLKKE--FKPNLQTFN---ILLSGWKQSEEAELFFEEMRELGIKPDVVSYNSLI 249
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEF 230
VY + ++KA + E M+ +P +T+T +I L G+ + + + +Y +
Sbjct: 250 DVYCKDREMEKAYKVVEKMREEDISPDVITYTSIIGGLGLVGQPDKARDILNEMKEYGCY 309
Query: 231 PE 232
P+
Sbjct: 310 PD 311
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 5/150 (3%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ E++ A KV +R+E PD+ Y+ +I LG Q A ++ E+K+ G PD
Sbjct: 254 KDREMEKAYKVVEKMREED-ISPDVITYTSIIGGLGLVGQPDKARDILNEMKEYGCYPDV 312
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
Y +I Y + A + M + G +P+ T+ + R + + ++ R
Sbjct: 313 AAYNAVIRNYCIAKRLGDASNLMDEMASKGLSPNATTYNLFFRVFYWSNDLRNSWSLYRR 372
Query: 224 CIQYVEFPER----FLEEVYQKHRKTQVDL 249
++ P FL +++KH K ++ L
Sbjct: 373 MMESGCLPNTQSCMFLIRLFRKHEKVEMAL 402
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 45/107 (42%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE PD++ Y+ +I K++ A L E+ +GL P+ Y V+ +
Sbjct: 304 KEYGCYPDVAAYNAVIRNYCIAKRLGDASNLMDEMASKGLSPNATTYNLFFRVFYWSNDL 363
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
+ Y M SGC P+ + LIR + E+ + D ++
Sbjct: 364 RNSWSLYRRMMESGCLPNTQSCMFLIRLFRKHEKVEMALTLWNDMVE 410
>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 445
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 51/93 (54%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ +Y+ +I L KNK + A +++ E+ +G+ PD YT +I + +G + +A
Sbjct: 195 KPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFS 254
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
MK P TF++LI L G++++V
Sbjct: 255 LLNEMKLKNINPDVYTFSVLIDALGKEGKKKMV 287
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L + ++ +D A+ +F ++ + PD+ Y+ +I L KN + A L E+
Sbjct: 274 LIDALGKEGKKKMVDEAMSLFEEMKHKNMI-PDIVTYNSLIDGLCKNHHLERAIALLKEM 332
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
K+ G+ PD YT ++ + G ++ A E ++ + GC + + ++I L AG
Sbjct: 333 KEHGIQPDVYSYTILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAG 390
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 51/106 (48%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE +PD+ Y+ ++ L K ++ +A+E F L +G + Y MI + G+
Sbjct: 333 KEHGIQPDVYSYTILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGLF 392
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCI 225
+AM+ M+ GC P+ +TF +I L E + + R+ I
Sbjct: 393 GEAMDLKSKMEGKGCMPNAITFRTIICALSEKDENDKAEKILREMI 438
Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEE---LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDK 181
PD+ +S +I LGK + M +E LF E+K + + PD Y +I + +++
Sbjct: 265 NPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLER 324
Query: 182 AMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
A+ + MK G P ++TIL+ L G E+
Sbjct: 325 AIALLKEMKEHGIQPDVYSYTILLDGLCKGGRLEI 359
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL S +I I +A +F + K G PD +I G I K +
Sbjct: 91 PDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYF 150
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
++ + A G ++++ LI L AGE + VA + R
Sbjct: 151 HDQVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLR 187
Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 38/88 (43%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P L+++++ L KNK+ LF + + G+ PD + +I + I A
Sbjct: 56 PPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSV 115
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+ + G P +T LI+ L GE
Sbjct: 116 FANILKRGFHPDAITLNTLIKGLCFRGE 143
>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 559
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 69/127 (54%), Gaps = 1/127 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L + +++D A+ + ++ E +PD+ Y+ ++ L KN ++ A +F +L +G
Sbjct: 429 LDALCKNHQVDKAIALLTKMKDE-GIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKG 487
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
D +YT MI + G+ D++++ M+ +GC P+ +T+ I+I +L + E +
Sbjct: 488 YILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIPNAVTYEIIICSLFDKDENDKAE 547
Query: 219 AVRRDCI 225
+ R+ I
Sbjct: 548 KLLREMI 554
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ +Y+ +I + K K + A +L+ E+ +G+ PD Y +I + VG + A +
Sbjct: 209 QPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATD 268
Query: 185 TYETMKASGCTPHKLTFTILI 205
+ M P+ TF IL+
Sbjct: 269 LFNKMIFENINPNVYTFNILV 289
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I L K +I+ A +L E+ G+ D Y ++ + +DKA+
Sbjct: 385 PDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIAL 444
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
MK G P T+T L+ L G E V D
Sbjct: 445 LTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFED 482
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
E++ A +FN + + P++ YS MI K K++ A LF E+ + PD Y
Sbjct: 332 EVNKAKHIFNTISQR-GVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTY 390
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFT 202
+I ++G I A++ + M G K+T+
Sbjct: 391 NSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYN 426
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLG--KNKQIAMAEELFCELKKEGLDPDTRVYTE 168
A +FN K ++ + ++Y+ IL+ G K +++ A+ + + K+G+ PD Y
Sbjct: 266 ATDLFN---KMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNS 322
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
++ Y V ++KA + T+ G P+ +++I+I
Sbjct: 323 LMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIH 360
>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
Length = 962
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R A K+F+ + K P+L YS +I L + + AE L E++++GL P
Sbjct: 635 LCRNGRTQFAFKIFHDMEKRKCL-PNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAP 693
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209
D +T +I ++ +G ID A M GC P+ T+++L++ L+
Sbjct: 694 DEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQ 741
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +IL +N+ + +A +F + KEG DP++ Y+ +I G +D+A++
Sbjct: 273 PDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDM 332
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
E M G P T+T+ I L
Sbjct: 333 LEEMIEKGIEPTVYTYTLPITAL 355
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P L ++ +I +L K ++ AE + ++ + L PD YT +I + + +D A
Sbjct: 237 QPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFG 296
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
++ M GC P+ +T++ LI L N G
Sbjct: 297 VFDRMVKEGCDPNSVTYSTLINGLCNEG 324
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
E+D ALK+F+ + + ++ LS+Y +I L K Q+ A+ LF + ++ + D V+
Sbjct: 839 EVDHALKIFHSIEAK-GFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVW 897
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
T ++ L+ G +D M+ M++ TP+ T+ IL R L G+
Sbjct: 898 TVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIGK 944
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE +PD Y++++ K ++ A F E+ + GL+P+ YT +I + + G +
Sbjct: 512 KENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKV 571
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNL 208
D A+ E M+ GC P+ ++ +I L
Sbjct: 572 DIALSLLERMEEMGCNPNVESYNAVINGL 600
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 49/95 (51%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E+ +P L YS ++ L + + AE+L ++K+ G PD +Y ++ + + +D
Sbjct: 782 EIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVD 841
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
A++ + +++A G H + LI L AG+ E
Sbjct: 842 HALKIFHSIEAKGFQLHLSIYRALICALCKAGQVE 876
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ ++D+AL + + +E+ P++ Y+ +I L K + + AE++ ++ ++GL P+
Sbjct: 567 KDGKVDIALSLLERM-EEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNV 625
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
YT +I + G A + + M+ C P+ T++ LI L G+ +
Sbjct: 626 ITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKAD 677
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 46/91 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ +I L + ++ +A L+ ++ KEGL P+T Y +I G A++
Sbjct: 377 RPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALK 436
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ M+ G + T+ +I+ L G+ E
Sbjct: 437 IFHWMEGHGSLANTQTYNEIIKGLCLGGDIE 467
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 7/135 (5%)
Query: 84 QSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ 143
+ R CR ++ L R +L++A+ +++ + KE P+ Y+ +I L +
Sbjct: 372 KKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKE-GLVPNTVTYNALINELCVGGR 430
Query: 144 IAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTI 203
+ A ++F ++ G +T+ Y E+I G I+KAM +E M G P +T+
Sbjct: 431 FSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNT 490
Query: 204 LIR------NLENAG 212
LI N+ NA
Sbjct: 491 LINGYLTKGNVNNAA 505
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P + Y+ I L + A EL +KK G P+ + YT +I ++G ++ A+
Sbjct: 342 EPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIG 401
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
Y M G P+ +T+ LI L G
Sbjct: 402 LYHKMLKEGLVPNTVTYNALINELCVGG 429
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+ +I L +N + A ++F +++K P+ Y+ +I Q G D+A
Sbjct: 623 PNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEIL 682
Query: 186 YETMKASGCTPHKLTFTILI 205
+ M+ G P ++TFT LI
Sbjct: 683 LKEMERKGLAPDEVTFTSLI 702
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 44/95 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + Y+ +I + A L +K+ G +PD Y E++ + + G ++ A
Sbjct: 483 PTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFY 542
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
++ M G P+ +++T LI G+ ++ ++
Sbjct: 543 FQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSL 577
>gi|156070758|gb|ABU45173.1| unknown [Solanum melongena]
Length = 427
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ I+ + +K + + L E+ GL PDT Y ++ Y + ++D+A +
Sbjct: 239 PDVGAYNVKIMNIQGSKPEGV-KALIEEMSNAGLKPDTISYNYLMTCYCKNQLMDEAQKV 297
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
YE +K +GC P+ TF LI L G E V R+ + + P+
Sbjct: 298 YEDLKTNGCNPNAATFRTLIFYLCKKGRFETGYKVFRESVSVHKIPD 344
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 57/127 (44%), Gaps = 8/127 (6%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
D ++F+ + + + PD Y +I + MA E F E++++G++ +T
Sbjct: 152 DRVAQLFDEIPVKYGFLPDKVSYGVLIRSYCEMGLPEMAMERFKEMEEKGVEITAVAFTT 211
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG--------EEELVAAV 220
++ + + G D+A + M + GC P + + I N++ + EE A +
Sbjct: 212 ILHSFYKKGKSDEAERVWNEMVSRGCGPDVGAYNVKIMNIQGSKPEGVKALIEEMSNAGL 271
Query: 221 RRDCIQY 227
+ D I Y
Sbjct: 272 KPDTISY 278
>gi|297599210|ref|NP_001046823.2| Os02g0468500 [Oryza sativa Japonica Group]
gi|47497324|dbj|BAD19365.1| fertility restorer homologue A-like [Oryza sativa Japonica Group]
gi|125582052|gb|EAZ22983.1| hypothetical protein OsJ_06677 [Oryza sativa Japonica Group]
gi|255670892|dbj|BAF08737.2| Os02g0468500 [Oryza sativa Japonica Group]
Length = 506
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 104 RQNELDLALKVFNFVRKE--VWYKPDLSLYSDMILMLGKNKQIAMAEELFCE-LKKEGLD 160
++ +L A +VF+ +RK +P L YS +I L + Q+ A ELF + ++K+ +
Sbjct: 204 KKGDLGTAFQVFDEMRKMNCADVRPSLVTYSTLIGGLCRGAQMKEAFELFEDMIEKDRIV 263
Query: 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
PD Y +IG + ++G ++KA + M+ + C P+ + LI GE E V
Sbjct: 264 PDQLTYNLLIGGFCRLGQVEKAQSIFGFMRKNECEPNAFNYATLINGHCKKGEVEAARGV 323
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R +++ A +F F+RK +P+ Y+ +I K ++ A +F E+ + G+ PD
Sbjct: 278 RLGQVEKAQSIFGFMRKNEC-EPNAFNYATLINGHCKKGEVEAARGVFEEMIRSGVQPDA 336
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
YT ++G + G +D+ + + M GC +T+ +L+ L
Sbjct: 337 VSYTSLVGCLCRHGNVDEGINLVQEMWQKGCKADVVTYNLLLEGL 381
>gi|357487731|ref|XP_003614153.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515488|gb|AES97111.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 691
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIA-MAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM 178
K+ KP+ + Y+ +I G+ K+++ MA + F ++KK G+ P + YT MI Y G
Sbjct: 416 KDFGLKPNANSYTCLISAYGRQKKMSDMAADAFLKMKKVGIKPTSHSYTAMIHAYSVSGW 475
Query: 179 IDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+KA +E M G P T+T L+ G+ E + +
Sbjct: 476 HEKAYAVFENMIREGIKPSIETYTTLLDAFRRVGDTETLMKI 517
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY-LQVGMIDKAM 183
KP ++ ++ + Q + E L E+K GL P+ YT +I Y Q M D A
Sbjct: 386 KPTAVTFNILMYAYSRRMQPKIVESLLAEMKDFGLKPNANSYTCLISAYGRQKKMSDMAA 445
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
+ + MK G P ++T +I +G E AV + I+
Sbjct: 446 DAFLKMKKVGIKPTSHSYTAMIHAYSVSGWHEKAYAVFENMIR 488
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 1/110 (0%)
Query: 103 RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
R++ D+A F K+V KP Y+ MI + A +F + +EG+ P
Sbjct: 436 RQKKMSDMAADAF-LKMKKVGIKPTSHSYTAMIHAYSVSGWHEKAYAVFENMIREGIKPS 494
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
YT ++ + +VG + M+ ++ M + ++TF IL+ G
Sbjct: 495 IETYTTLLDAFRRVGDTETLMKIWKLMMSEKVKGTQVTFNILVDGFAKQG 544
>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
Length = 600
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R+ + ALK+F V ++ Y+P++ Y+ +I L K ++ A ELF L K GL+P
Sbjct: 268 LAREQGVSEALKLFGSVLRQ-GYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEP 326
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
D YT I + G ++ A+ + M GC P ++ +I L
Sbjct: 327 DAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGL 373
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L + R++ + A+ +F+ + E PD+ YS +I LGK ++ A L +
Sbjct: 439 LVDGLCKARQEGRIKEAITLFDAM-IEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAM 497
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ +G P+ Y +I + +D+A+E + M GC P +T+ +I L
Sbjct: 498 EAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISAL 551
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 48/91 (52%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ +I L + + ++ A +LF + ++G +P+ Y +I L+ +++A E
Sbjct: 255 KPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFE 314
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ + G P +T+T+ I L AG E
Sbjct: 315 LFSGLVKHGLEPDAITYTVFIDGLCKAGRVE 345
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ L R + + A VF+ +RK ++ P+ Y+ ++ L +++ A+ L+ + K G
Sbjct: 57 ISGLCRASRIGDAQTVFDGMRKHGFW-PNRITYNALLSGLCNGGRMSDAQALYERMIKAG 115
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
PD Y ++ + +VG +D+A++ ++ G P +T+ LI A
Sbjct: 116 YSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKA 168
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ ++ +I L K K++ AE L ++ +G P+ + +I + G KAM T
Sbjct: 361 PDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTT 420
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEE 214
++ M G P +T+ IL+ L A +E
Sbjct: 421 FKEMLKRGVKPTVVTYNILVDGLCKARQE 449
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ +LD ALK+F+ K + PD+ Y+ +I K ++ A+ + + E L PD
Sbjct: 132 KVGKLDEALKIFDGAVKR-GFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDV 190
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
Y ++ + G +D E + G +P+ +T++ LI L
Sbjct: 191 VTYNSLVNGLCKNGRVD---EARMLIVDKGFSPNVITYSTLISGL 232
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+ +I L ++ A ELF + ++G PDT Y +I + M+DKA+
Sbjct: 504 PNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALAL 563
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
++ +G P + LI L
Sbjct: 564 FDGSLEAGVVPTSGMYFSLIDGL 586
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+S ++ I L + +I A+ +F ++K G P+ Y ++ G + A Y
Sbjct: 49 DISTFNIYISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALY 108
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGE 213
E M +G +P +T+ L+ G+
Sbjct: 109 ERMIKAGYSPDVVTYNTLLHGFCKVGK 135
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 39/89 (43%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y PD+ Y+ ++ K ++ A ++F K G PD Y +I + + +D+A
Sbjct: 116 YSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQ 175
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAG 212
+ M + P +T+ L+ L G
Sbjct: 176 RILQRMVSESLVPDVVTYNSLVNGLCKNG 204
>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
[Arabidopsis lyrata subsp. lyrata]
gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
[Arabidopsis lyrata subsp. lyrata]
Length = 1164
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I + + A +LF E+ GL+PD +TE++ Y + G I A
Sbjct: 807 PDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRV 866
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+ M +GC+P+ +T+T LI L G+
Sbjct: 867 HNHMIQAGCSPNVVTYTTLIDGLCKEGD 894
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 14/137 (10%)
Query: 104 RQNELDLALKVFNFVRK--EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
R ELD KV+ + K + KP+ Y +I +L + ++A AEE F E+ +G+ P
Sbjct: 716 RFGELD---KVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILP 772
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE-------- 213
DT VYT ++ + + G I A + + M + TP LT+T +I G+
Sbjct: 773 DTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLF 832
Query: 214 -EELVAAVRRDCIQYVE 229
E L + D I + E
Sbjct: 833 HEMLCRGLEPDIITFTE 849
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
Query: 102 LRRQNELDLALKVFNFVRKEVW---YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L ++ +LD A N + E+W +P++ Y+ ++ L K+ I A +L E + G
Sbjct: 889 LCKEGDLDSA----NELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAG 944
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
L+ DT YT ++ Y + G +DKA E M G P +TF +L+
Sbjct: 945 LNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGF 994
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 19/145 (13%)
Query: 82 GFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141
G RIC+L +A+ + +E+ Q L PD +Y+ ++ K
Sbjct: 747 GLLCRICKLAEAE--EAFSEMIGQGIL-----------------PDTIVYTTLVDGFCKR 787
Query: 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF 201
I A + F E+ + PD YT +I + Q+G + +A + + M G P +TF
Sbjct: 788 GDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITF 847
Query: 202 TILIRNLENAGEEELVAAVRRDCIQ 226
T L+ AG + V IQ
Sbjct: 848 TELMNGYCKAGHIKDAFRVHNHMIQ 872
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 6/135 (4%)
Query: 83 FQSRICRLLKADLLDTLTELR----RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILML 138
F +CR L+ D++ T TEL + + A +V N + + P++ Y+ +I L
Sbjct: 832 FHEMLCRGLEPDII-TFTELMNGYCKAGHIKDAFRVHNHM-IQAGCSPNVVTYTTLIDGL 889
Query: 139 GKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK 198
K + A EL E+ K GL P+ Y ++ + G I++A++ +A+G
Sbjct: 890 CKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADT 949
Query: 199 LTFTILIRNLENAGE 213
+T+T L+ +GE
Sbjct: 950 VTYTTLMDAYCKSGE 964
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 45/90 (50%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y PD+ YS +I + ++ +L ++K++GL P++ Y +IG+ ++ + +A
Sbjct: 700 YTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAE 759
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGE 213
E + M G P + +T L+ G+
Sbjct: 760 EAFSEMIGQGILPDTIVYTTLVDGFCKRGD 789
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
+++ Y+ +I + + +I A L ++ +G PD Y+ +I Y + G +DK +
Sbjct: 668 NVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLI 727
Query: 187 ETMKASGCTPHKLTFTILIRNL---------ENAGEEELVAAVRRDCIQYVEFPERF 234
E MK G P+ T+ +I L E A E + + D I Y + F
Sbjct: 728 EKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGF 784
>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 580
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 63/113 (55%), Gaps = 2/113 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A+K+F + K +K ++ + +I L K ++ A ELF +L EG +P+ YT MI
Sbjct: 419 AMKLFTEL-KSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMI 477
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL-ENAGEEELVAAVRR 222
+ + G +DKA + M+A+GCTP +T+ L+R E+ EE+V + R
Sbjct: 478 HGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHR 530
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ ++ +I L K ++ A++L + + G+ PD Y +I + VG ++ A E
Sbjct: 257 QPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARE 316
Query: 185 TYETMKASGCTPHKLTFTILIR 206
+ +M + GC P +++ +LI
Sbjct: 317 LFVSMPSKGCEPDVISYNVLIN 338
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 12/140 (8%)
Query: 82 GFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141
G S C L LL+ L + R E F + + Y P++ Y+ +I L
Sbjct: 99 GLSSDRCTL--NILLNCLCNVNRLRE---GFAAFAGILRR-GYSPNIVTYNTLIKGLCME 152
Query: 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS------GCT 195
+I+ A LF ++K G PD Y +I G I+ A++ ++ M C
Sbjct: 153 HRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCK 212
Query: 196 PHKLTFTILIRNLENAGEEE 215
P+ +T+ I++ L G E+
Sbjct: 213 PNVITYNIIVDGLCKVGRED 232
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL Y+ +I + A ELF + +G +PD Y +I Y + +++AM+
Sbjct: 293 PDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKL 352
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
Y M G P+ +T+ L++ + AG+
Sbjct: 353 YNEMLLVGKRPNVITYDSLLKGIFLAGK 380
>gi|357129397|ref|XP_003566348.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
mitochondrial-like [Brachypodium distachyon]
Length = 649
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 53/96 (55%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ +++ MI L + ++ A ++F +K +G P+ YT +I + + G +D AM
Sbjct: 373 KPDVVVHNTMIDGLLRGQRRPEAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKLDMAMR 432
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+E M+ +GC P T+T L+ NA + V A+
Sbjct: 433 CFEEMQVAGCQPEVATYTCLLVGYGNAKRMDRVTAM 468
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A +VF+ +R + Y PDL Y+ ++L + + A ++ ++ ++G+ PD V+ MI
Sbjct: 326 AARVFDRMRDQ--YTPDLRSYTALMLAWCNARNLVEAGRVWNDMLEKGMKPDVVVHNTMI 383
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN 207
L+ +A++ +E MKA G P+ T+T+LIR+
Sbjct: 384 DGLLRGQRRPEAVKMFELMKAKGPPPNVWTYTMLIRD 420
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+Q +LD+A++ F + + +P+++ Y+ +++ G K++ + E+ ++G PD
Sbjct: 423 KQGKLDMAMRCFEEM-QVAGCQPEVATYTCLLVGYGNAKRMDRVTAMLEEMAQKGCPPDG 481
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN 207
R Y +I + M D A+ Y+ M G P T+ +++++
Sbjct: 482 RTYNALIKLLTNRNMPDDAVRIYKKMITKGLEPTIHTYNMMMKS 525
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 6/132 (4%)
Query: 79 LEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILML 138
LE+G + + ++ ++D L +R+ E A+K+F ++ + P++ Y+ +I
Sbjct: 368 LEKGMKPDV--VVHNTMIDGLLRGQRRPE---AVKMFELMKAK-GPPPNVWTYTMLIRDH 421
Query: 139 GKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK 198
K ++ MA F E++ G P+ YT ++ Y +D+ E M GC P
Sbjct: 422 CKQGKLDMAMRCFEEMQVAGCQPEVATYTCLLVGYGNAKRMDRVTAMLEEMAQKGCPPDG 481
Query: 199 LTFTILIRNLEN 210
T+ LI+ L N
Sbjct: 482 RTYNALIKLLTN 493
>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Glycine max]
Length = 836
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 4/128 (3%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + YS +I + ++ A+E+F E++ EGL P+ YT +IG + ++G +D
Sbjct: 674 PTCATYSSLIHGMCCIGRVDEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQMDIVGSI 733
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRRDCIQYVEFPERFLEEVYQK 241
M ++G P+K+T+TI+I G EL+ + R+ I L++ Y K
Sbjct: 734 LLEMSSNGIRPNKITYTIMIDGYCKLGNMKEARELLNEMIRNGIAPDTVTYNALQKGYCK 793
Query: 242 HRKTQVDL 249
R+ V L
Sbjct: 794 ERELTVTL 801
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L+ L + NEL + +VF+ + V PD+ ++ I K ++ A +LFC+++ G
Sbjct: 228 LSSLVKANELHKSYEVFDLACQGV--APDVFTFTTAINAFCKGGRVGDAVDLFCKMEGLG 285
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ P+ Y +I + G ++A+ + M S P +T+ +LI L
Sbjct: 286 VFPNVVTYNNVIDGLFKSGRFEEALRFKDRMVRSKVNPSVVTYGVLISGL 335
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 45/89 (50%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE + P++ Y+ ++ K +I A + F L E ++ + VY +I Y ++G +
Sbjct: 598 KEYGFVPNVYTYALLLEGYCKADRIEDAVKFFKNLDYEKVELSSVVYNILIAAYCRIGNV 657
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNL 208
+A + + MK+ G P T++ LI +
Sbjct: 658 TEAFKLRDAMKSRGILPTCATYSSLIHGM 686
>gi|62734288|gb|AAX96397.1| expressed protein [Oryza sativa Japonica Group]
gi|77550330|gb|ABA93127.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 661
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+++I LGKN+ + AE+L+ E+ + G++PD Y +I Y +V +D ++
Sbjct: 393 PDALSYNNLIDWLGKNELVGEAEQLYKEMGERGVNPDEYTYVLLIESYFKVDRVDDSVSY 452
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ M +G P+ F +I L
Sbjct: 453 FNKMFVAGLRPNANAFNKVIGGL 475
>gi|115472657|ref|NP_001059927.1| Os07g0548300 [Oryza sativa Japonica Group]
gi|28564790|dbj|BAC57720.1| putative crp1 protein [Oryza sativa Japonica Group]
gi|113611463|dbj|BAF21841.1| Os07g0548300 [Oryza sativa Japonica Group]
Length = 661
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD Y+ MI GK + A + F +++EG++PD + +I + + G D+A+E
Sbjct: 394 RPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIE 453
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ M+ S C T+ I+I L GEE+
Sbjct: 454 LFDEMRESNCPLGTTTYNIMINLL---GEEQ 481
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ MI +LG+ ++ E + E+K++GL P+ YT ++ VY + G +A++ E MK
Sbjct: 470 YNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMK 529
Query: 191 ASGCTPHKLTFTILIRNLENAGEEE----LVAAVRRDCIQ 226
A G P + L+ G + +V A+R D ++
Sbjct: 530 ADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLE 569
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 17/122 (13%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE P++ Y+ ++ + G++ + A + +K +GL P +Y ++ Y Q G+
Sbjct: 494 KEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLA 553
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENA-GEEELVA------------AVRRDCIQ 226
D A+ + M+A G T+++ +L NA GE+ +A +R D I
Sbjct: 554 DHALNVVKAMRADGLE----ASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVIT 609
Query: 227 YV 228
Y
Sbjct: 610 YT 611
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
D AL V +R + + L S +I G++++IA A + +K+ GL PD YT
Sbjct: 554 DHALNVVKAMRADGLEASTVVLNS-LINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTT 612
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHK 198
++ ++V +K YE M SGC P +
Sbjct: 613 LMKALIRVEQFEKVPVIYEEMITSGCAPDR 642
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 3/144 (2%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+ +L RR E + AL + F+ E+ KP Y+ ++ K + AE++ E+
Sbjct: 262 LISSLGSARRVAEAE-ALFLEFFLAGEI--KPRTRAYNALLKGYVKIGSLKNAEQVLDEM 318
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
+ G+ PD Y+ ++ Y + G + A + M+A G P F+ ++ + GE
Sbjct: 319 SQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEW 378
Query: 215 ELVAAVRRDCIQYVEFPERFLEEV 238
+ AV R+ P+R V
Sbjct: 379 QKAFAVLREMHASGVRPDRHFYNV 402
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 112 LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ---IAMAEELFCELKKEGLDPDTRVYTE 168
L++ +R E + PDL+ YS ++ L + A+ + L +L++ L+PD ++++
Sbjct: 168 LRLLGLLR-EHSFLPDLASYSHLLASLLNTRDPPDAALLDRLLGDLRESRLEPDAPLFSD 226
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
+I + + + D A+E + +A G TP T LI +L +A
Sbjct: 227 LISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSA 269
>gi|356549954|ref|XP_003543355.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11900-like [Glycine max]
Length = 366
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R +D L VF + K+ + PD Y+ +I L K + M F E+ ++G++P
Sbjct: 220 LGRTGRVDEMLDVFASI-KDTGFVPDTVSYNTLINGLRKAGRFDMCFVYFKEMTEKGVEP 278
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
D YT +I ++ + G ++++++ + MK G P + LI NL G+
Sbjct: 279 DLLTYTAIIEIFGRSGNVEESLKCFREMKLKGVLPSIYIYRSLIHNLNKTGK 330
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 79/172 (45%), Gaps = 10/172 (5%)
Query: 53 MWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQ--------SRI-CRLLKADLLDTLTELR 103
++R +LS E+ A +K A++ SK+ + + S I C + + +
Sbjct: 127 VFRKLLLSCESPSATSCLKFAQAFSKVNDCVELLRFLEEISEITCSSTSSFINKIIFAFA 186
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ + D +L +F+ ++++ Y DL Y+ ++ +LG+ ++ ++F +K G PDT
Sbjct: 187 KCGQRDKSLVIFDHLKRQ-GYGLDLVTYNIVLDILGRTGRVDEMLDVFASIKDTGFVPDT 245
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
Y +I + G D ++ M G P LT+T +I +G E
Sbjct: 246 VSYNTLINGLRKAGRFDMCFVYFKEMTEKGVEPDLLTYTAIIEIFGRSGNVE 297
>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 894
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
+EL A KVF + +E + ++S Y+++I + +I A ELF ++K++G PD
Sbjct: 239 HELGDAYKVFEIMPQEGCLRNEVS-YTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPT 297
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
YT ++ + +VG +A++ +E M +G P+ T+T+LI G+
Sbjct: 298 YTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGK 345
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 48/84 (57%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ I + ++ AEE+ ++K+EG+ D+ +Y ++ Y +G +D A
Sbjct: 607 QPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFG 666
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
M +GC P + T++IL+++L
Sbjct: 667 VLIRMFDTGCEPSRQTYSILLKHL 690
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ +IL K ++ A ++F + +EG + YT +I + +VG ID+A+E + MK
Sbjct: 228 YTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMK 287
Query: 191 ASGCTPHKLTFTILIRNLENAGEE 214
GC P T+T+L+ G+E
Sbjct: 288 EDGCFPDVPTYTVLVAAFCEVGKE 311
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
++D AL++F F KE PD+ Y+ ++ + + A + F E+ + G++P+ Y
Sbjct: 275 KIDEALELF-FQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTY 333
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
T +I + +VG +D+ ME TM G + F LI
Sbjct: 334 TVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALI 372
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P+L ++ M+ K + +A+ FC L K G D+ YT +I Y ++ + A +
Sbjct: 187 EPNLISFNTMVNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYK 246
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
+E M GC +++++T LI G+
Sbjct: 247 VFEIMPQEGCLRNEVSYTNLIHGFCEVGK 275
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 71/180 (39%), Gaps = 21/180 (11%)
Query: 57 RVLSSEAIQAVHAMKLAK--SSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKV 114
R + +AI + +MKL K +S+ CR D L +N+L L
Sbjct: 378 RGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVT 437
Query: 115 FNF---------VRKEVW----------YKPDLSLYSDMILMLGKNKQIAMAEELFCELK 155
+N V W + PD + I L K ++ A ++F LK
Sbjct: 438 YNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLK 497
Query: 156 KEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ + + +YT +I Y + A ++ M GC P+ +TF +L+ L G+ E
Sbjct: 498 EKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVE 557
>gi|125559009|gb|EAZ04545.1| hypothetical protein OsI_26694 [Oryza sativa Indica Group]
Length = 784
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 112 LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIG 171
+ VF+ +R + PD+ ++ ++ + G+N + +F E+KK G P+ Y +I
Sbjct: 403 MAVFDELR-SAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLIS 461
Query: 172 VYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAV-RRDC 224
Y + G+ D AM+ Y+ M +G P T+ ++ L G E+L A + RDC
Sbjct: 462 SYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDC 519
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 14/152 (9%)
Query: 55 RSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKV 114
R R L EA Q MK + GF+ ++ LLD + RR +E A++V
Sbjct: 254 RRRALYKEAAQVFDEMKAS--------GFEPD--KVTFNSLLDVYGKARRHDE---AIEV 300
Query: 115 FNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYL 174
+ + V P + Y+ +I K+ + A L E++ +G+ PD YT +I
Sbjct: 301 IQEMER-VGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGIKPDVVTYTTLISGLD 359
Query: 175 QVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
+ G ID A+ Y+ M +GC P+ T+ LI+
Sbjct: 360 RAGKIDAAIVEYDEMVRNGCKPNLCTYNALIK 391
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD Y+ +I G+ Q+ A LF E+K GL PD Y + Y+ M ++A+E
Sbjct: 660 RPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIE 719
Query: 185 TYETMKASGCTPHKLTFTILI 205
M GC P++ T+ ++
Sbjct: 720 LVRYMVTQGCKPNERTYNSIV 740
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Query: 103 RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
RR+ A +VF+ + K ++PD ++ ++ + GK ++ A E+ E+++ G P
Sbjct: 254 RRRALYKEAAQVFDEM-KASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPS 312
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
Y +I Y++ G++++A+ + M+ G P +T+T LI L+ AG+
Sbjct: 313 VVTYNSLISSYVKDGLLEQAVALKQEMEVKGIKPDVVTYTTLISGLDRAGK 363
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 64/135 (47%), Gaps = 3/135 (2%)
Query: 99 LTELRRQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
++ L R ++D A+ ++ VR KP+L Y+ +I M G + +F EL+
Sbjct: 355 ISGLDRAGKIDAAIVEYDEMVRNGC--KPNLCTYNALIKMHGVRGKFPEMMAVFDELRSA 412
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
G PD + ++ V+ Q G+ + ++ MK +G P + T+ LI + G +L
Sbjct: 413 GFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLA 472
Query: 218 AAVRRDCIQYVEFPE 232
+ + ++ +P+
Sbjct: 473 MQIYKRMMEAGIYPD 487
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE PD Y+ +I + A ++F E+K G +PD + ++ VY +
Sbjct: 235 KEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRH 294
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
D+A+E + M+ GC P +T+ LI + G E A++++
Sbjct: 295 DEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQE 338
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 68/153 (44%), Gaps = 1/153 (0%)
Query: 91 LKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEEL 150
L ++L+ + + +N + ++ + KE + Y+ ++ M + E +
Sbjct: 591 LDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENI 650
Query: 151 FCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN-LE 209
E+K G+ PD Y +I Y + G + +A + MK SG P +T+ I +++ +
Sbjct: 651 LTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVS 710
Query: 210 NAGEEELVAAVRRDCIQYVEFPERFLEEVYQKH 242
N+ EE + VR Q + ER + + +
Sbjct: 711 NSMFEEAIELVRYMVTQGCKPNERTYNSIVEGY 743
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ R DLA++++ + + Y PD+S Y+ ++ L + + AE+LF E+++
Sbjct: 460 ISSYSRCGLFDLAMQIYKRMMEAGIY-PDVSTYNAVLSALARGGRWEQAEKLFAEMEERD 518
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK-LTFTILIRN--LENAGEEE 215
PD Y+ ++ Y +DK + + + PH L T+++ N + N E E
Sbjct: 519 CKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAE 578
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 122 VWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDK 181
V Y L +YS M + K++ EL +K+ G+ PD Y +I + + +
Sbjct: 208 VTYNVVLHVYSKMAVPW---KEVV---ELVASMKEHGVAPDRYTYNTLISCCRRRALYKE 261
Query: 182 AMETYETMKASGCTPHKLTFTILI 205
A + ++ MKASG P K+TF L+
Sbjct: 262 AAQVFDEMKASGFEPDKVTFNSLL 285
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 51/115 (44%)
Query: 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKK 156
+TL + QN LD + K+ Y P+ Y +I + +A +++ + +
Sbjct: 422 NTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMME 481
Query: 157 EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
G+ PD Y ++ + G ++A + + M+ C P + +++ L+ NA
Sbjct: 482 AGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANA 536
>gi|147812173|emb|CAN61517.1| hypothetical protein VITISV_033966 [Vitis vinifera]
Length = 635
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 6/130 (4%)
Query: 88 CRLLKA--DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIA 145
CR +++ L++ + E R E+ L E +KP L Y+ ++ L K
Sbjct: 69 CRTVRSRTKLMNIMIEKGRPQEVQSILDSI----IEGGHKPSLVTYTTLLAALTIQKHFD 124
Query: 146 MAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ ++++ G++PD+ + +I + + G + +AM+ + MK SG P TF LI
Sbjct: 125 SIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLI 184
Query: 206 RNLENAGEEE 215
+ AGE E
Sbjct: 185 KGYGIAGEPE 194
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E KPD+ +S ++ + E+F ++ K + PD VY+ + Y++ G
Sbjct: 345 EEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEP 404
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+KA E M SG P+ + FT +I +AG E
Sbjct: 405 EKAEEILNAMIKSGFHPNVVMFTTIINGWCSAGRME 440
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD +YS + + + AEE+ + K G P+ ++T +I + G ++ A++
Sbjct: 385 QPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVVMFTTIINGWCSAGRMEYAIK 444
Query: 185 TYETMKASGCTPHKLTFTILI 205
+E M G P+ TF LI
Sbjct: 445 IFEKMCECGIAPNLKTFETLI 465
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 115 FNFVRKEVWYKPDLSLYSDMILML-------GKNKQIAMAEELFCELKKEGLDPDTRVYT 167
F + K++ +P+L +++ +I G N+ + + EE G+ PD ++
Sbjct: 305 FVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEF-------GVKPDVITFS 357
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ + G +DK E ++ M + P ++IL + AGE E
Sbjct: 358 TIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPE 405
>gi|297733647|emb|CBI14894.3| unnamed protein product [Vitis vinifera]
Length = 746
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 125 KPDLSLYSDMILMLGKNKQIA-MAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+P++ Y+ +I G+ K+++ MA + F +KK G+ P + YT +I Y G +KA
Sbjct: 415 EPNVKSYTCLISAYGRQKKMSDMAADAFLRMKKVGIKPTSHSYTALIHAYSVGGWHEKAY 474
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+E MK G P T+T L+ AG+ + + +
Sbjct: 475 TAFENMKREGIKPSIETYTALLDAFRRAGDTQTLMKI 511
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 1/110 (0%)
Query: 103 RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
R++ D+A F K+V KP Y+ +I A F +K+EG+ P
Sbjct: 430 RQKKMSDMAADAF-LRMKKVGIKPTSHSYTALIHAYSVGGWHEKAYTAFENMKREGIKPS 488
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
YT ++ + + G M+ ++ M + ++TF IL+ G
Sbjct: 489 IETYTALLDAFRRAGDTQTLMKIWKLMLSDKIEGTRVTFNILLDGFAKQG 538
>gi|255577248|ref|XP_002529506.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531022|gb|EEF32875.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 808
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 111 ALKVFNFVR-KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
A+ +FN +R K +PD+ ++ +I + + Q+ + +F + EGL P Y +
Sbjct: 302 AIDIFNSMREKRAECRPDIVTFTSIIHLYSLSGQVENCKAVFSTMLAEGLTPTIVSYNAL 361
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
IG Y GM ++A+ ++ +KASG P +++T L+
Sbjct: 362 IGAYAFHGMSEEALSVFKKIKASGLLPDVVSYTSLL 397
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL VF + K PD+ Y+ ++ G++KQ A E+F +KK L P+ + +I
Sbjct: 374 ALSVFKKI-KASGLLPDVVSYTSLLSSYGRSKQPKKAREMFNMMKKAKLKPNVVSFNALI 432
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
Y G++ A++ M+ G P+ +T L+ G++ + AV
Sbjct: 433 DAYGSNGLLADAVKVLREMEQDGIHPNIVTICTLLAACGRCGQKVNIDAV 482
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
E + A+ ++N +RK + P+ Y+ +I K + A E F ++ + + V
Sbjct: 510 EYEKAVALYNSMRK-MKVAPNSVTYTVLISGCCKMSKYGKAIEFFADMMELKIALTKEVC 568
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
+ +I Y + G I +A + MK +GC P +TFT ++ NAGE
Sbjct: 569 SSVICAYSKQGQITEAESIFTMMKMAGCCPDIITFTAMLHAY-NAGEH 615
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ ++ G+ Q + + K G+ +T IG Y+ VG +KA+
Sbjct: 458 PNIVTICTLLAACGRCGQKVNIDAVLSAAKMRGIKLNTVACNSAIGSYMNVGEYEKAVAL 517
Query: 186 YETMKASGCTPHKLTFTILI 205
Y +M+ P+ +T+T+LI
Sbjct: 518 YNSMRKMKVAPNSVTYTVLI 537
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL ++ ++ Q + A F +K + PDT +I +++G +KA++
Sbjct: 246 PDLVTHNIVLSAYKTGAQYSKALSYFELMKGTNIRPDTTTRNIVIYCLVKLGQCEKAIDI 305
Query: 186 YETM--KASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+ +M K + C P +TFT +I +G+ E AV
Sbjct: 306 FNSMREKRAECRPDIVTFTSIIHLYSLSGQVENCKAV 342
>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g06920-like [Cucumis sativus]
Length = 904
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 9/150 (6%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+ +D AL + + ++ +PD+ LY+ I GK ++ MA + F E+K GL D
Sbjct: 247 REGRVDAALSLLDEMKSNSL-EPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDD 305
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV--- 220
YT MIGV + +++A+E +E M + P + +I AG+ E ++
Sbjct: 306 VTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLER 365
Query: 221 --RRDCIQYVEFPERFLEEVYQKHRKTQVD 248
R+ CI V L + RK QVD
Sbjct: 366 QRRKGCIPSVVSYNCILSCL---GRKGQVD 392
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 46/86 (53%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E+ Y ++ L++ +I + + ++ A L E+K L+PD +Y I + + G +
Sbjct: 227 QELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKV 286
Query: 180 DKAMETYETMKASGCTPHKLTFTILI 205
D A + + MKA+G +T+T +I
Sbjct: 287 DMAWKXFHEMKANGLVLDDVTYTSMI 312
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K + + PD Y+ +I L K A ELF +K++G DTR Y +I + + G +
Sbjct: 576 KNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKV 635
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNL 208
+KA + E MK G P +T+ +I L
Sbjct: 636 NKAYQLLEEMKTKGHEPTVVTYGSVIDGL 664
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL L + + + K +I LF E+K G PD R YT +I ++ G +A E
Sbjct: 547 PDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYEL 606
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+ TMK GC + +I +G+
Sbjct: 607 FYTMKEQGCVLDTRAYNTVIDGFCKSGK 634
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
++ +YS +I GK +I A + EL ++GL P+ + ++ ++ I +A+ +
Sbjct: 688 NVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCF 747
Query: 187 ETMKASGCTPHKLTFTILIRNL 208
++MK CTP+ +T++ILI L
Sbjct: 748 QSMKDLKCTPNYITYSILIHGL 769
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 37/152 (24%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMA---------EE 149
L+ L R+ ++D ALK F ++K+ P+LS Y+ MI ML K ++ A
Sbjct: 382 LSCLGRKGQVDEALKKFEEMKKDAI--PNLSTYNIMIDMLCKAGKLETALVVRDAMKDAG 439
Query: 150 LF-------------CELKK--------EGLD-----PDTRVYTEMIGVYLQVGMIDKAM 183
LF C+ ++ EGLD PD Y +I + G +D+A
Sbjct: 440 LFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAY 499
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ YE M + P+ + +T LIRN G +E
Sbjct: 500 KLYEQMLDANQIPNAVVYTSLIRNFFKCGRKE 531
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++P + Y +I L K ++ A LF E K +G++ + +Y+ +I + +VG ID+A
Sbjct: 650 HEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAY 709
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGE 213
E + G TP+ T+ L+ L A E
Sbjct: 710 LIMEELMQKGLTPNVYTWNCLLDALVKAEE 739
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LLD L + E+ AL F + K++ P+ YS +I L K ++ A + E+
Sbjct: 730 LLDALV---KAEEISEALVCFQSM-KDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEM 785
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
+K+G P+ YT MI + G I +A +E K G + +I L NA
Sbjct: 786 QKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNA 842
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 4/121 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
++D L + +R LD A +F + + +PD Y +I LG++ ++ A +L+ ++
Sbjct: 450 MVDRLCKAQR---LDDACSIFEGLDHKTC-RPDAVTYCSLIEGLGRHGRVDEAYKLYEQM 505
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
P+ VYT +I + + G + + Y M GC+P L + + AGE
Sbjct: 506 LDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEI 565
Query: 215 E 215
E
Sbjct: 566 E 566
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/106 (20%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 113 KVFNFVR--KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
+ F F++ +++ ++P S Y+++I L ++ LF ++++ G + ++T +I
Sbjct: 183 EAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLI 242
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
V+ + G +D A+ + MK++ P + + + I AG+ ++
Sbjct: 243 RVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDM 288
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 78/183 (42%), Gaps = 8/183 (4%)
Query: 32 SGKKIQALTVTCGLRDANKKPMWRSRVLSSEAI--QAVHAMKLAKSSSKLEEGFQSRICR 89
+GK AL V ++DA P V++ + + A +L + S + EG + CR
Sbjct: 422 AGKLETALVVRDAMKDAGLFP----NVITVNIMVDRLCKAQRLDDACS-IFEGLDHKTCR 476
Query: 90 LLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEE 149
+ L R +D A K++ + + P+ +Y+ +I K + +
Sbjct: 477 PDAVTYCSLIEGLGRHGRVDEAYKLYEQML-DANQIPNAVVYTSLIRNFFKCGRKEDGHK 535
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209
++ E+ + G PD + + + G I+K ++ +K G P ++TILI L
Sbjct: 536 IYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLV 595
Query: 210 NAG 212
AG
Sbjct: 596 KAG 598
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + Y+ ++ LG+ Q+ A + F E+KK+ + P+ Y MI + + G ++ A+
Sbjct: 373 PSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAI-PNLSTYNIMIDMLCKAGKLETALVV 431
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ MK +G P+ +T I++ L
Sbjct: 432 RDAMKDAGLFPNVITVNIMVDRL 454
>gi|242074484|ref|XP_002447178.1| hypothetical protein SORBIDRAFT_06g029920 [Sorghum bicolor]
gi|241938361|gb|EES11506.1| hypothetical protein SORBIDRAFT_06g029920 [Sorghum bicolor]
Length = 643
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM 189
Y+ +I GK + A+ELF E+ +G PD+ Y +I ++ G D A YE M
Sbjct: 423 FYTSLIDGFGKTGMVDQAKELFEEMIAKGFVPDSYCYNVLIDALVKAGRTDIACAFYERM 482
Query: 190 KASGCTPHKLTFTILIRNL--ENAGEEEL 216
+ GC T+TILI L E+ EE L
Sbjct: 483 EDDGCDQTVYTYTILIDGLFKEHKNEEAL 511
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 9/158 (5%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D++ +L R+ E A+ +F + K + D Y ++ L + + A F
Sbjct: 357 LIDSMGKLGREKE---AMALFERM-KASGIELDAVTYGVIVNCLCRFGNMEEALSCFRSC 412
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
++G+ + YT +I + + GM+D+A E +E M A G P + +LI L AG
Sbjct: 413 VEKGVAVNAIFYTSLIDGFGKTGMVDQAKELFEEMIAKGFVPDSYCYNVLIDALVKAGRT 472
Query: 215 ELVAAVRR-----DCIQYVEFPERFLEEVYQKHRKTQV 247
++ A C Q V ++ ++++H+ +
Sbjct: 473 DIACAFYERMEDDGCDQTVYTYTILIDGLFKEHKNEEA 510
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y +I L K+ + A +F + K G + +YT +I ++G +AM +E MK
Sbjct: 319 YVLVIGALSKDGKPFEALAVFERMLKRGCPANAAMYTALIDSMGKLGREKEAMALFERMK 378
Query: 191 ASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
ASG +T+ +++ L G E + R C++
Sbjct: 379 ASGIELDAVTYGVIVNCLCRFGNMEEALSCFRSCVE 414
>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Cucumis sativus]
Length = 786
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K+V PD+ Y+ +I K +++ A E F E+K GL P+ Y+ +I + + GM+
Sbjct: 351 KDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMM 410
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
A++ + M+ +G P++ T+T LI AG
Sbjct: 411 QGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGN 444
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + Y+ MI L K + + LF ++++ GL PD Y +I Y +VG +++
Sbjct: 287 PSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASL 346
Query: 186 YETMKASGCTPHKLTFTILIR 206
+ MK GC P +T+ LI
Sbjct: 347 FNEMKDVGCVPDIITYNGLIN 367
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E+ PD+ Y+ +I GK + LF E+K G PD Y +I Y + +
Sbjct: 316 REMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKM 375
Query: 180 DKAMETYETMKASGCTPHKLTFTILI 205
+A E + MK +G P+ +T++ LI
Sbjct: 376 PRAFEYFSEMKNNGLKPNVVTYSTLI 401
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
++V + + Y +I L K + +A + FC + GL P+ VYT +I + I
Sbjct: 596 QDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCI 655
Query: 180 DKAMETYETMKASGCTPHKLTFTILIR-NLENAGEEELVAAVRRDCIQYVEF 230
+ A + ++ M+ G TP FT LI NL++ +E + + R +EF
Sbjct: 656 ESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEF 707
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ YS +I K + A +LF ++++ GL P+ YT +I + G + +A +
Sbjct: 391 KPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWK 450
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRRDCIQ 226
M +G + +T+T L+ L AG EE+ ++ +D I
Sbjct: 451 LLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGIS 496
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPDL LY +I +++ + + E+K G+ + + T +I Y + G A+
Sbjct: 531 KPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALN 590
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
++ M+ G +T+ +LI L AG EL
Sbjct: 591 FFQEMQDVGVEATIVTYCVLIDGLCKAGIVEL 622
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 44/81 (54%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
K ++ Y+ ++ L K ++ AEE+F + K+G+ P+ +VYT ++ Y++ ++ AM+
Sbjct: 461 KLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMK 520
Query: 185 TYETMKASGCTPHKLTFTILI 205
+ M P + + +I
Sbjct: 521 ILKQMTECNIKPDLILYGSII 541
>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Brachypodium distachyon]
Length = 810
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
D+ALK+ N VR+ +PD+ Y+ +I + ++ A +L L K+GL P+T VY
Sbjct: 593 DMALKMLNDVRRR-GLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNS 651
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYV 228
+I Y + M+ + + YE+M G T+T LI G + + +
Sbjct: 652 LITGYKNLNMMKEVSKFYESMIKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKG 711
Query: 229 EFPERF 234
P+ F
Sbjct: 712 YIPDAF 717
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+++I + ++ A LF +KK G+ P Y ++ Y + G +D+A++
Sbjct: 399 PDVFTYNNLIHWHCQAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKL 458
Query: 186 YETMKASGCTPHKLTFTILIRN 207
Y M G P+ +T+ L+R
Sbjct: 459 YSEMPMEGFKPNVVTYITLMRG 480
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL +F+ ++K KP ++ Y+ +++ K + A +L+ E+ EG P+ Y ++
Sbjct: 420 ALNLFDRMKK-AGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLM 478
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
Y+ D A + MK +G + + T+ +LI +
Sbjct: 479 RGYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGI 516
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 28/191 (14%)
Query: 22 FHQRPQISLPSGKKIQALTVT--CGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKL 79
F + P + +++ AL +T C L D + A++ + MK
Sbjct: 215 FDEMPGAEIDPDQRVYALAITALCKLGDGGR------------ALRMLREMK-------- 254
Query: 80 EEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
E GF + C ++D L + R E AL+V + +R + K D+ + + ++
Sbjct: 255 EVGFDT--CDFTYRTMVDVLVKTGRMEE---ALRVNDEMR-DAGKKMDVIVATTLMRGYC 308
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
+++ A LF E K+G+ P +Y +I QVGM KA E M G P
Sbjct: 309 LRQEVGNALNLFKETLKDGIVPTKVMYGVLIRGCDQVGMTQKAYELCRQMTGQGLLPSTF 368
Query: 200 TFTILIRNLEN 210
+++++ L N
Sbjct: 369 ELSLVLKGLLN 379
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D S Y+ +I K+ +A A EL+ E+ +G PD +T + + G ID A +
Sbjct: 680 DTSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFTFTALTHGLCRSGDIDGAKKLL 739
Query: 187 ETMKASGCTPHKLTFTILIRN 207
E M+ P+ + +LI
Sbjct: 740 EEMRRLDVRPNVFIYNMLING 760
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L++ + + R E+D LK F + P + Y+ +I K + A ++ ++
Sbjct: 512 LINGICMVDRVCEVDGMLKSF----MSEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQM 567
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+++GL P+ YT I Y + G D A++ ++ G P + + LI G
Sbjct: 568 REKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRRGLQPDIVAYNALINGFCQEGN 626
>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L + L A+++FN + K K D+ ++ +I L K ++ A ELF +L +E
Sbjct: 459 LNGLCKNGCLFEAMELFNKL-KSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEE 517
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
L PD Y MI + + G + KA ++ M+ +GCTP K+T+ LIR
Sbjct: 518 LQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGF 567
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 5/117 (4%)
Query: 102 LRRQNELDLALKVFNFVRKE-----VWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKK 156
L R + +ALK+ + + + +KP + YS +I L K+++ A +LF E+K
Sbjct: 211 LCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKV 270
Query: 157 EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+G+ P YT +I + G ++A + M G P+ +TF +LI L G+
Sbjct: 271 QGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGK 327
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 46/82 (56%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ ++ +I +L K ++ A++L + + G+ P+ Y +I + VG ++ A E
Sbjct: 309 QPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARE 368
Query: 185 TYETMKASGCTPHKLTFTILIR 206
+ +M + GC P + +T+LI
Sbjct: 369 LFVSMPSKGCEPDVICYTVLIN 390
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+L Y+ +I + A ELF + +G +PD YT +I Y + +++AM+
Sbjct: 345 PNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKL 404
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
Y M G P T+ L+ L G+
Sbjct: 405 YNGMLQVGKRPDVKTYGALLTGLFQGGK 432
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ ++++ A+K++N + +V +PD+ Y ++ L + ++ A++LF +K G+ D
Sbjct: 394 KTSKVEEAMKLYNGML-QVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDL 452
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+Y + + G + +AME + +K+ F LI L AG+ E
Sbjct: 453 YIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLE 504
>gi|413917008|gb|AFW56940.1| plastid transcriptionally active 12-like protein [Zea mays]
Length = 600
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 46/81 (56%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PDL Y+ M+L ++ AE+ F +K++GL P+ VY ++ Y ++ ++K M
Sbjct: 382 EPDLCSYTTMVLAYVNASEMNGAEKFFRRIKEDGLKPNVVVYGTLMKGYSKLNNLEKVMR 441
Query: 185 TYETMKASGCTPHKLTFTILI 205
YE M+ G P++ +T ++
Sbjct: 442 VYERMRIQGVEPNQTIYTTIM 462
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGV---YLQV 176
K +KPD ++ MI M K A A +LF ++ + G+ T + ++ Y +V
Sbjct: 240 KRTSFKPDQKMFHMMIYMYKKAGDYAQARKLFAQMSERGIPLSTVTFNSLMSFETEYKEV 299
Query: 177 GMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
I Y+ M+ +G P +++++LI+ A EE AV
Sbjct: 300 SNI------YDQMQRAGLKPDVVSYSLLIKAYGKARREEEALAV 337
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 63/137 (45%), Gaps = 10/137 (7%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDM-ILML----GKNKQIAMAEE 149
+L TL ++ + ++ ++ ++R + W+ +S+M LML GK + AE
Sbjct: 107 ILGTLIRFKQLKKWNIVSEILEWLRTQHWWD-----FSEMDFLMLVTAYGKLGDFSRAER 161
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209
+ + K+G P T ++ Y + KA + M+ SG P +T+ I++++L
Sbjct: 162 VLKYMNKKGYQPSVISQTGLMEAYGRGKQYRKAEAVFRRMQTSGPQPSPVTYQIILKSLV 221
Query: 210 NAGEEELVAAVRRDCIQ 226
+ + A+ D +
Sbjct: 222 EGDKYKEAEAIFEDLLN 238
>gi|242084804|ref|XP_002442827.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
gi|241943520|gb|EES16665.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
Length = 899
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
K DL Y +I +L K + A+E E+ GL P+ +YT +I Y +VG + A+E
Sbjct: 331 KLDLQAYGVLINVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALE 390
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
+ M+ GC P+ T++ LI L
Sbjct: 391 VFRLMEHEGCRPNAWTYSSLIYGL 414
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++E+ ++ + D A +FN + +KP + Y+ I K QI AE L E++++G
Sbjct: 583 ISEMIKEGKHDHAKSMFNEMISS-GHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDG 641
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ PD Y I +G +D+A T + M + C P+ T+ IL+++
Sbjct: 642 VAPDVVTYNVFINGCGHMGYMDRAFSTLKRMIDASCEPNYWTYWILLKHF 691
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL+VF + E +P+ YS +I L +++++ A L +++++G+ P YT +I
Sbjct: 388 ALEVFRLMEHE-GCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLI 446
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ D A +E M+ +G TP + + +L L +G E
Sbjct: 447 QGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTHALCKSGRAE 491
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ +Y+ +I K ++ A E+F ++ EG P+ Y+ +I +Q + KAM
Sbjct: 367 PNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMAL 426
Query: 186 YETMKASGCTPHKLTFTILIRN 207
M+ G TP +T+T LI+
Sbjct: 427 ITKMQEDGITPGVITYTTLIQG 448
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
+L Y+ +I L K +I A + E+ G+ P Y MI Y + G + A+
Sbjct: 194 NLHTYTLLIKGLCKEGRIHGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIK 253
Query: 187 ETMKASGCTPHKLTFTILIRNL----ENAGEEELVAAVRR 222
M+ +GC P T+ ILI L + EE L A+ R
Sbjct: 254 ALMERNGCNPDDWTYNILIYGLCGEKPDEAEELLNDAIVR 293
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
K D YS ++ L K K++ A + ++ G+ + YT +I ++ G D A
Sbjct: 538 KADSYTYSVLLQALCKQKKLNEALSILDQMTLSGVKCNIVAYTIIISEMIKEGKHDHAKS 597
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRRDCI 225
+ M +SG P T+T+ I + G+ E L+ + RD +
Sbjct: 598 MFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGV 642
>gi|9857539|gb|AAG00894.1|AC064879_12 Hypothetical protein [Arabidopsis thaliana]
Length = 490
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ +I + K+++I A +L ++++E PD YT +IG +G DKA E
Sbjct: 242 KPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQPDKARE 301
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
+ MK GC P + IRN
Sbjct: 302 VLKEMKEYGCYPDVAAYNAAIRNF 325
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++PDL ++ ++L K AE F E+K +GL PD Y +I VY + I+KA
Sbjct: 209 FQPDLQTFN---ILLSGWKSSEEAEAFFEEMKGKGLKPDVVTYNSLIDVYCKDREIEKAY 265
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
+ + M+ TP +T+T +I L G+ + V ++ +Y +P+
Sbjct: 266 KLIDKMREEEETPDVITYTTVIGGLGLIGQPDKAREVLKEMKEYGCYPD 314
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 68/149 (45%), Gaps = 7/149 (4%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ E++ A K+ + +R+E PD+ Y+ +I LG Q A E+ E+K+ G PD
Sbjct: 257 KDREIEKAYKLIDKMREEE-ETPDVITYTTVIGGLGLIGQPDKAREVLKEMKEYGCYPDV 315
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE-----EELVA 218
Y I + + A + + M G +P+ T+ + R L A + E V
Sbjct: 316 AAYNAAIRNFCIARRLGDADKLVDEMVKKGLSPNATTYNLFFRVLSLANDLGRSWELYVR 375
Query: 219 AVRRDCIQYVEFPERFLEEVYQKHRKTQV 247
+ +C+ + FL +++++H K +
Sbjct: 376 MLGNECLPNTQ-SCMFLIKMFKRHEKVDM 403
>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Brachypodium distachyon]
Length = 739
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A+ VF ++ + PD +Y+ M+ L + AE L + EG +P+ VY +I
Sbjct: 161 AMSVFAGMQAD-GCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALI 219
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
Y VG ++ A++ +E M +GC+P+ T+T LI
Sbjct: 220 DGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGF 257
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 74/146 (50%), Gaps = 11/146 (7%)
Query: 76 SSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEV-WYKPDLSLYSDM 134
S + EGF+ + ++ L+D + +L+LA+ VF R +V P++ Y+++
Sbjct: 201 SDAMAEGFEPNV--VVYNALIDGYCNV---GDLELAVDVFE--RMDVNGCSPNVRTYTEL 253
Query: 135 ILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGC 194
I K++++ A LF + GL P+ YT +I G +D A ++M+ SG
Sbjct: 254 ISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGL 313
Query: 195 TPHKLTFTILIRNL---ENAGEEELV 217
P++ T ++LI L E GE +L+
Sbjct: 314 VPNEWTCSVLIDALCKHERVGEAQLL 339
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ + ++ AE + + G+ P+ Y +I Y +G+ +A
Sbjct: 454 KPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAFS 513
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
T++ M A+GC P++ ++T+L+R L
Sbjct: 514 TFKHMVANGCKPNEESYTVLLRLL 537
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 13/152 (8%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L + R E L L + ++K + K + +Y+ +I L K + A A+ L L
Sbjct: 323 LIDALCKHERVGEAQLLLG--SLIQKGI--KVNEIVYTSLIDGLCKAGRFAAADRLMQTL 378
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTI----LIRNLEN 210
+G PD Y+ +I + + +AM + M G P +T+TI L+R +
Sbjct: 379 VSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGA 438
Query: 211 AGEEELV-----AAVRRDCIQYVEFPERFLEE 237
G ++++ A ++ D Y F + E
Sbjct: 439 DGSKKILDKMIAAGIKPDVFTYTIFVRSYCHE 470
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 38/89 (42%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PD Y+ ++ + +A A LF + G YT ++ GM+ +AM
Sbjct: 103 FAPDSHAYTSFVVGYCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAM 162
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAG 212
+ M+A GC P + ++ L AG
Sbjct: 163 SVFAGMQADGCAPDPHVYATMVHGLCGAG 191
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PD YS +I L + K+++ A + ++ ++G+ P YT +I ++ D +
Sbjct: 383 FVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSK 442
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ + M A+G P T+TI +R+ + G E
Sbjct: 443 KILDKMIAAGIKPDVFTYTIFVRSYCHEGRME 474
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
L + G PD+ YT + Y + G++ A + M GC T+T L+ L AG
Sbjct: 97 SLLRAGFAPDSHAYTSFVVGYCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAG 156
>gi|449516876|ref|XP_004165472.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g01390-like [Cucumis sativus]
Length = 737
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 63/125 (50%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L+ L+ FN+ +K D Y+ M+ + G+ +I+ +F ++K++G+
Sbjct: 175 LKTHPPLEKTWLFFNWASTLQVFKHDQYTYTTMLDIFGEAGRISSMNYVFQQMKEKGIKI 234
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
D YT ++ G +D A++ ++ MKA+GC P +++T I+ L + G+ A
Sbjct: 235 DAVTYTSLMHWRSNSGDVDGAIKVWKEMKANGCHPTVVSYTAYIKILLDNGQINEATATY 294
Query: 222 RDCIQ 226
+ +Q
Sbjct: 295 KKMLQ 299
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
+LD E R + ++ + KE K D Y+ ++ + + A +++ E+
Sbjct: 207 MLDIFGEAGRISSMNYVFQQM----KEKGIKIDAVTYTSLMHWRSNSGDVDGAIKVWKEM 262
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
K G P YT I + L G I++A TY+ M SG +P+ T+TIL+ L G+
Sbjct: 263 KANGCHPTVVSYTAYIKILLDNGQINEATATYKKMLQSGLSPNCCTYTILMEYLIGEGK 321
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
++D A+KV+ ++ + P + Y+ I +L N QI A + ++ + GL P+ Y
Sbjct: 251 DVDGAIKVWKEMKANGCH-PTVVSYTAYIKILLDNGQINEATATYKKMLQSGLSPNCCTY 309
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
T ++ + G +A++ + M+ +G P K ILI+ +GE
Sbjct: 310 TILMEYLIGEGKCKEALDIFSKMQDAGVYPDKAACNILIQKCCKSGE 356
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y L LYS LGK + A ++F L +E T YT ++ Y G K +
Sbjct: 531 YHATLILYS-----LGKAGKPQYARKVFNMLPEE--LKCTATYTALVDGYFSAGSSGKGL 583
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
+ +ETM+ G TP T+ +L+ L G + RR+
Sbjct: 584 KIFETMRKKGFTPSLGTYNVLLNGLAKNGRGVELNIYRRE 623
>gi|303280720|ref|XP_003059652.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458307|gb|EEH55604.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 196
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 9/127 (7%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL+VF +R E + ++ YS +I K KQ+ A E+F K G++PD Y MI
Sbjct: 46 ALEVFEEMRAE-GVEANIYTYSALISACAKGKQLDKALEIFELCKVNGVEPDGITYGAMI 104
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRRDCIQ 226
+ +DKA+E + MK +G + +T+ L+ E AG+ E+ ++RD I+
Sbjct: 105 SACEKGRRVDKALEIFVQMKKAGMEANAITYNALLAACERAGKADDAREVFDDMKRDGIK 164
Query: 227 YVEFPER 233
P+R
Sbjct: 165 ----PDR 167
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ + +LD AL++F + +PD Y MI K +++ A E+F ++KK G
Sbjct: 69 ISACAKGKQLDKALEIFELCKVN-GVEPDGITYGAMISACEKGRRVDKALEIFVQMKKAG 127
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
++ + Y ++ + G D A E ++ MK G P ++ LI GEE A
Sbjct: 128 MEANAITYNALLAACERAGKADDAREVFDDMKRDGIKPDRVAHAALIGAC--VGEERYQA 185
Query: 219 AV 220
A+
Sbjct: 186 AI 187
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 132 SDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA 191
S +I GK++Q A E+F E++ EG++ + Y+ +I + +DKA+E +E K
Sbjct: 31 SALINACGKSRQWKKALEVFEEMRAEGVEANIYTYSALISACAKGKQLDKALEIFELCKV 90
Query: 192 SGCTPHKLTFTILIRNLE 209
+G P +T+ +I E
Sbjct: 91 NGVEPDGITYGAMISACE 108
>gi|125600636|gb|EAZ40212.1| hypothetical protein OsJ_24656 [Oryza sativa Japonica Group]
Length = 661
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD Y+ MI GK + A + F +++EG++PD + +I + + G D+A+E
Sbjct: 394 RPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIE 453
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ M+ S C T+ I+I L GEE+
Sbjct: 454 LFDEMRESNCPLGTTTYNIMINLL---GEEQ 481
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ MI +LG+ ++ E + E+K++GL P+ YT ++ VY + G +A++ E MK
Sbjct: 470 YNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMK 529
Query: 191 ASGCTPHKLTFTILIRNLENAGEEE----LVAAVRRDCIQ 226
A G P + L+ G + +V A+R D ++
Sbjct: 530 ADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLE 569
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 17/122 (13%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE P++ Y+ ++ + G++ + A + +K +GL P +Y ++ Y Q G+
Sbjct: 494 KEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLA 553
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENA-GEEELVA------------AVRRDCIQ 226
D A+ + M+A G T+++ +L NA GE+ +A +R D I
Sbjct: 554 DHALNVVKAMRADGLE----ASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVIT 609
Query: 227 YV 228
Y
Sbjct: 610 YT 611
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
D AL V +R + + L S +I G++++IA A + +K+ GL PD YT
Sbjct: 554 DHALNVVKAMRADGLEASTVVLNS-LINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTT 612
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHK 198
++ ++V +K YE M SGC P +
Sbjct: 613 LMKALIRVEQFEKVPVIYEEMITSGCAPDR 642
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 3/144 (2%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+ +L RR E + AL + F+ E+ KP Y+ ++ K + AE++ E+
Sbjct: 262 LISSLGSARRVAEAE-ALFLEFFLAGEI--KPRTRAYNALLKGYVKIGSLKNAEQVLDEM 318
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
+ G+ PD Y+ ++ Y + G + A + M+A G P F+ ++ + GE
Sbjct: 319 SQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEW 378
Query: 215 ELVAAVRRDCIQYVEFPERFLEEV 238
+ AV R+ P+R V
Sbjct: 379 QKAFAVLREMHASGVRPDRHFYNV 402
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 112 LKVFNFVRKEVWYKPDLSLYSDMILMLGKNK---QIAMAEELFCELKKEGLDPDTRVYTE 168
L++ +R E + PDL+ YS ++ +L + + A+ + L +L++ L+PD ++++
Sbjct: 168 LRLLGLLR-EHSFLPDLASYSHLLALLLNTRDPPEAALLDRLLGDLRESRLEPDAPLFSD 226
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
+I + + + D A+E + +A G TP T LI +L +A
Sbjct: 227 LISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSA 269
>gi|357151708|ref|XP_003575878.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Brachypodium distachyon]
Length = 676
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+TE +Q + AL +FN + E PD+ Y+ +I + +Q+ +++LF +
Sbjct: 438 ITEHCKQGHITYALDLFNRM-AENGCHPDIHTYTTLIARYCQQRQMEESQKLFDKCLAIE 496
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
L P + YT MI Y +VG A+ +E M +GC +T+ LI L
Sbjct: 497 LVPTKQTYTSMIAGYCKVGKSTSALRVFERMVQNGCQADSITYGALISGL 546
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A ++F + K YKP++ Y+ MI K ++A AE L + ++GL P+T YT +I
Sbjct: 309 AFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLI 368
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ + G + A E M+ G P+ T+ LI L G+
Sbjct: 369 SGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGK 411
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
++ + A ++ N +R+E ++P++ Y+ +I L K +I A ++ +GL D
Sbjct: 373 KEGSFNCAFELMNKMRRE-GFQPNIYTYNALIDGLCKKGKIQEAYKVLRMANNQGLQLDK 431
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
YT MI + + G I A++ + M +GC P T+T LI
Sbjct: 432 VTYTVMITEHCKQGHITYALDLFNRMAENGCHPDIHTYTTLI 473
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 6/134 (4%)
Query: 81 EGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK 140
EGFQ I L+D L ++ ++ A KV + + D Y+ MI K
Sbjct: 390 EGFQPNI--YTYNALIDGLC---KKGKIQEAYKVLRMANNQ-GLQLDKVTYTVMITEHCK 443
Query: 141 NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT 200
I A +LF + + G PD YT +I Y Q ++++ + ++ A P K T
Sbjct: 444 QGHITYALDLFNRMAENGCHPDIHTYTTLIARYCQQRQMEESQKLFDKCLAIELVPTKQT 503
Query: 201 FTILIRNLENAGEE 214
+T +I G+
Sbjct: 504 YTSMIAGYCKVGKS 517
>gi|297611745|ref|NP_001067799.2| Os11g0433600 [Oryza sativa Japonica Group]
gi|255680050|dbj|BAF28162.2| Os11g0433600, partial [Oryza sativa Japonica Group]
Length = 487
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+++I LGKN+ + AE+L+ E+ + G++PD Y +I Y +V +D ++
Sbjct: 219 PDALSYNNLIDWLGKNELVGEAEQLYKEMGERGVNPDEYTYVLLIESYFKVDRVDDSVSY 278
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ M +G P+ F +I L
Sbjct: 279 FNKMFVAGLRPNANAFNKVIGGL 301
>gi|225430029|ref|XP_002281569.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g25630-like [Vitis vinifera]
Length = 635
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 6/130 (4%)
Query: 88 CRLLKA--DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIA 145
CR +++ L++ + E R E+ L E +KP L Y+ ++ L K
Sbjct: 69 CRTVRSRTKLMNIMIEKGRPQEVQSILDSI----IEGGHKPSLVTYTTLLAALTIQKHFD 124
Query: 146 MAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ ++++ G++PD+ + +I + + G + +AM+ + MK SG P TF LI
Sbjct: 125 SIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLI 184
Query: 206 RNLENAGEEE 215
+ AGE E
Sbjct: 185 KGYGIAGEPE 194
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E KPD+ +S ++ + E+F ++ K + PD VY+ + Y++ G
Sbjct: 345 EEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEP 404
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+KA E M SG P+ + FT +I +AG E
Sbjct: 405 EKAEEILNAMIKSGFHPNVVIFTTIINGWCSAGRME 440
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD +YS + + + AEE+ + K G P+ ++T +I + G ++ A++
Sbjct: 385 QPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVVIFTTIINGWCSAGRMEYAIK 444
Query: 185 TYETMKASGCTPHKLTFTILI 205
+E M G P+ TF LI
Sbjct: 445 IFEKMCECGIAPNLKTFETLI 465
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 115 FNFVRKEVWYKPDLSLYSDMILML-------GKNKQIAMAEELFCELKKEGLDPDTRVYT 167
F + K++ +P+L +++ +I G N+ + + EE G+ PD ++
Sbjct: 305 FVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEF-------GVKPDVITFS 357
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ + G +DK E ++ M + P ++IL + AGE E
Sbjct: 358 TIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPE 405
>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Cucumis sativus]
Length = 868
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 18/187 (9%)
Query: 55 RSRVLSSEAIQAVHAMKLAKSSSKLEE---GFQSRICRLLKADLLDTLTELRRQNELDLA 111
R ++ E + V ++ K + L+ F+S++C D L EL + E A
Sbjct: 114 RHSAIAEEVLHQV--LQFGKDDASLDNILLNFESKLCG--SEDYTFLLRELGNRGECWKA 169
Query: 112 LKVFNF-VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
++ F+F + +E L S MI LG+ ++ +A+ +F EG ++ +I
Sbjct: 170 IRCFDFALVREGRKNERGKLASAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALI 229
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG----------EEELVAAV 220
Y + G D+A++ +E+MK SG P+ +T+ +I G EE L V
Sbjct: 230 SAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGV 289
Query: 221 RRDCIQY 227
+ D I Y
Sbjct: 290 QPDRITY 296
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+Q + + +VF ++K+ + P+L YS +I + K A E+F E K+ GL D
Sbjct: 445 KQGKFNEVTRVFKEMKKDRVF-PNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADV 503
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+Y+E+I + G++D A+ + M G P+ +T+ +I
Sbjct: 504 VLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSII 545
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
K D+ Y+ ++ GK + +F E+KK+ + P+ Y+ +I VY + + ++AME
Sbjct: 430 KKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAME 489
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
+ K +G + ++ LI L
Sbjct: 490 VFREFKQAGLKADVVLYSELINAL 513
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNK-QIAMAEELFCELKKEGLDPD 162
+ D A+KVF + K KP+L Y+ +I GK + E+F E+ + G+ PD
Sbjct: 234 KSGYFDEAIKVFESM-KVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPD 292
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
Y ++ V + G+ + A + M G T+ L+ + G+ +L
Sbjct: 293 RITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLA 347
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ YS M K ++ A L+ E+K G+ D Y ++ +Y ++G + A++
Sbjct: 361 PNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKV 420
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERF----LEEVYQK 241
+ M +SG +T+ L+ G+ V V ++ + FP L +VY K
Sbjct: 421 CKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSK 480
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 38/91 (41%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD Y+ ++ + + A LF E+ G+D D Y ++ + G +D A E
Sbjct: 290 QPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYE 349
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
M P+ +T++ + AG E
Sbjct: 350 IMLEMPGKKILPNVVTYSTMADGYAKAGRLE 380
>gi|326504498|dbj|BAJ91081.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 793
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 112 LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIG 171
+ VF+ +R + PD+ ++ ++ + G+N + +F E+KK G P+ Y +I
Sbjct: 409 MAVFDDLR-SAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLIS 467
Query: 172 VYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
Y + G+ D++ME Y+ M +G P T+ ++ L G E
Sbjct: 468 SYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWE 511
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD Y+ MI G+ Q+ A LF E+K GL PD Y + Y+ M ++A++
Sbjct: 666 RPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIFVKSYVANSMFEEAID 725
Query: 185 TYETMKASGCTPHKLTFTILIR 206
M GC P++ T+ +++
Sbjct: 726 LVRYMVTRGCKPNERTYNSILQ 747
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A KVF+ +R ++PD ++ ++ + GK + A + E++ G P Y +I
Sbjct: 268 AAKVFDEMRA-AGFEPDKVTFNSLLDVYGKARMHDEAIGVLKEMELGGCPPSVVTYNSLI 326
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
Y++ G++ +A E E M+ G P +T+T LI L+ AG+
Sbjct: 327 SSYVKDGLLKEAAELKEEMEVKGIQPDVITYTTLISGLDRAGK 369
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + Y+ +I K+ + A EL E++ +G+ PD YT +I + G ID A+ T
Sbjct: 317 PSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDVITYTTLISGLDRAGKIDAAIGT 376
Query: 186 YETMKASGCTPHKLTFTILIR 206
Y+ M +GC P+ T+ LI+
Sbjct: 377 YDEMLRNGCKPNLCTYNALIK 397
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
++ L R ++D A+ ++ + + KP+L Y+ +I + G + +F +L+ G
Sbjct: 361 ISGLDRAGKIDAAIGTYDEMLRN-GCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAG 419
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
PD + ++ V+ Q G+ + ++ MK SG P + T+ LI + G
Sbjct: 420 FVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCG 473
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ ++ M + E + E+K G PD Y MI Y + G + +A + MK
Sbjct: 637 YNSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMK 696
Query: 191 ASGCTPHKLTFTILIRN-LENAGEEELVAAVRRDCIQYVEFPERFLEEVYQKH 242
+SG P +T+ I +++ + N+ EE + VR + + ER + Q++
Sbjct: 697 SSGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEY 749
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 147 AEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
A ++F E++ G +PD + ++ VY + M D+A+ + M+ GC P +T+ LI
Sbjct: 268 AAKVFDEMRAAGFEPDKVTFNSLLDVYGKARMHDEAIGVLKEMELGGCPPSVVTYNSLIS 327
Query: 207 NLENAG---------EEELVAAVRRDCIQYV 228
+ G EE V ++ D I Y
Sbjct: 328 SYVKDGLLKEAAELKEEMEVKGIQPDVITYT 358
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 42/79 (53%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+++ + M+ + GKN+ + EE+ +K ++ T Y ++ +Y ++G +K
Sbjct: 598 DINVLNAMVSVYGKNRMVKKVEEILSLMKGSSINLSTATYNSLMHMYSRLGDCEKCENIL 657
Query: 187 ETMKASGCTPHKLTFTILI 205
+K+SG P + ++ +I
Sbjct: 658 TEIKSSGARPDRYSYNTMI 676
>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
Length = 700
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDL--SLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
R +L+ FN + KE+ Y+P L + Y+ +++ L KNK++ MAE LF ++ G+
Sbjct: 263 RSGRFKESLEAFNLM-KEMGYEPGLIDTAYNSVLVSLVKNKKLDMAENLFAQMINNGVSC 321
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ YT MI + ++ AM+ + M + P +T+TI+I L
Sbjct: 322 NNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVISAL 368
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+ L +RR E AL++ + ++ P++ Y+ + L K +++ A+E+F E
Sbjct: 399 LIQGLCAVRRPEE---ALELVTLM-EQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEA 454
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
GL P+ Y ++ Y + + +AM+ + M + CTP +T+T LI+ L
Sbjct: 455 LARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGL 508
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y PD+ Y+ +I L K K I A + ++++ G +P+ Y +I V ++A+
Sbjct: 354 YAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEAL 413
Query: 184 ETYETMKASGCTPHKLTFTILIRNL 208
E M+ G P+ T+TIL L
Sbjct: 414 ELVTLMEQGGVPPNIYTYTILTHGL 438
>gi|15227316|ref|NP_179280.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75217061|sp|Q9ZVX5.1|PP156_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g16880
gi|3757517|gb|AAC64219.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|18175643|gb|AAL59902.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|20465657|gb|AAM20297.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330251452|gb|AEC06546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 743
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 56/108 (51%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
+ +L+ AL + + E PD Y+ ++ + K +++ +EL ++KK GL P+
Sbjct: 217 EGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRV 276
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
Y ++ Y ++G + +A + E MK + P T+ ILI L NAG
Sbjct: 277 TYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAG 324
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+ +++ AL++++ ++K V P +S ++ +I L + + +A E F EL + GL PD
Sbjct: 498 REEKVEKALEMWDEMKK-VKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDD 556
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ +I Y + G ++KA E Y P T IL+ L G E
Sbjct: 557 STFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTE 608
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 4/140 (2%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
+LD L + R+ LD A + N K + +++ Y +I+ + +++ A E++ E+
Sbjct: 457 ILDALCKERK---LDEAHNLLNSAHKRGFIVDEVT-YGTLIMGFFREEKVEKALEMWDEM 512
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
KK + P + +IG G + AME ++ + SG P TF +I G
Sbjct: 513 KKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRV 572
Query: 215 ELVAAVRRDCIQYVEFPERF 234
E + I++ P+ +
Sbjct: 573 EKAFEFYNESIKHSFKPDNY 592
Score = 37.0 bits (84), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL FN + +E + D Y+ MI K+K++ A +L E++++GL+PD Y I
Sbjct: 610 ALNFFNTLIEE--REVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFI 667
Query: 171 GVYLQVGMIDKAMETYETMK 190
+ ++ G K ET E +K
Sbjct: 668 SLLMEDG---KLSETDELLK 684
>gi|15225055|ref|NP_181456.1| lateral organ junction protein [Arabidopsis thaliana]
gi|75100007|sp|O80958.1|PP194_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g39230, mitochondrial; AltName: Full=Protein LATERAL
ORGAN JUNCTION; Flags: Precursor
gi|3402682|gb|AAC28985.1| unknown protein [Arabidopsis thaliana]
gi|330254554|gb|AEC09648.1| lateral organ junction protein [Arabidopsis thaliana]
Length = 867
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 1/135 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ N +DLAL++ + + K + K DL Y +I K + A LF EL + GL P+
Sbjct: 637 KSNRMDLALEMTHEM-KSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNV 695
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
VY +I + +G +D A++ Y+ M G + T+T +I L G L + + +
Sbjct: 696 SVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGNINLASDLYSE 755
Query: 224 CIQYVEFPERFLEEV 238
+ P+ L V
Sbjct: 756 LLDLGIVPDEILHMV 770
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 15/145 (10%)
Query: 70 MKLAKS--SSKLEEGFQSRICRLLKADLLDTLTELR-RQNELDLA--LKVFNFVRKEVWY 124
M LA+S S LE+G + + L+D + + QN D+ + NF EV
Sbjct: 500 MDLARSIFSEMLEKGLEPN--NFTYSILIDGFFKNKDEQNAWDVINQMNASNFEANEV-- 555
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG-LDPDTRVYTEMIGVYLQVGMIDKAM 183
+Y+ +I L K Q + A+E+ L KE Y +I +++VG D A+
Sbjct: 556 -----IYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSCTSYNSIIDGFVKVGDTDSAV 610
Query: 184 ETYETMKASGCTPHKLTFTILIRNL 208
ETY M +G +P+ +TFT LI
Sbjct: 611 ETYREMSENGKSPNVVTFTSLINGF 635
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
++N++ A +F+ + E+ P++S+Y+ +I ++ A +L+ ++ +G+ D
Sbjct: 672 KKNDMKTAYTLFSEL-PELGLMPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDL 730
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
YT MI L+ G I+ A + Y + G P ++ +L+ L G+
Sbjct: 731 FTYTTMIDGLLKDGNINLASDLYSELLDLGIVPDEILHMVLVNGLSKKGQ 780
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
DL Y+ MI L K+ I +A +L+ EL G+ PD ++ ++ + G KA +
Sbjct: 729 DLFTYTTMIDGLLKDGNINLASDLYSELLDLGIVPDEILHMVLVNGLSKKGQFLKASKML 788
Query: 187 ETMKASGCTPHKLTFTILI 205
E MK TP+ L ++ +I
Sbjct: 789 EEMKKKDVTPNVLLYSTVI 807
>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Cucumis sativus]
Length = 868
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 18/187 (9%)
Query: 55 RSRVLSSEAIQAVHAMKLAKSSSKLEE---GFQSRICRLLKADLLDTLTELRRQNELDLA 111
R ++ E + V ++ K + L+ F+S++C D L EL + E A
Sbjct: 114 RHSAIAEEVLHQV--LQFGKDDASLDNILLNFESKLCG--SEDYTFLLRELGNRGECWKA 169
Query: 112 LKVFNF-VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
++ F+F + +E L S MI LG+ ++ +A+ +F EG ++ +I
Sbjct: 170 IRCFDFALVREGRKNERGKLASAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALI 229
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG----------EEELVAAV 220
Y + G D+A++ +E+MK SG P+ +T+ +I G EE L V
Sbjct: 230 SAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGV 289
Query: 221 RRDCIQY 227
+ D I Y
Sbjct: 290 QPDRITY 296
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+Q + + +VF ++K+ + P+L YS +I + K A E+F E K+ GL D
Sbjct: 445 KQGKFNEVTRVFKEMKKDRVF-PNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADV 503
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+Y+E+I + G++D A+ + M G P+ +T+ +I
Sbjct: 504 VLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSII 545
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
K D+ Y+ ++ GK + +F E+KK+ + P+ Y+ +I VY + + ++AME
Sbjct: 430 KKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAME 489
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
+ K +G + ++ LI L
Sbjct: 490 VFREFKQAGLKADVVLYSELINAL 513
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNK-QIAMAEELFCELKKEGLDPD 162
+ D A+KVF + K KP+L Y+ +I GK + E+F E+ + G+ PD
Sbjct: 234 KSGYFDEAIKVFESM-KVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPD 292
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
Y ++ V + G+ + A + M G T+ L+ + G+ +L
Sbjct: 293 RITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLA 347
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ YS M K ++ A L+ E+K G+ D Y ++ +Y ++G + A++
Sbjct: 361 PNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKV 420
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERF----LEEVYQK 241
+ M +SG +T+ L+ G+ V V ++ + FP L +VY K
Sbjct: 421 CKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSK 480
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 38/91 (41%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD Y+ ++ + + A LF E+ G+D D Y ++ + G +D A E
Sbjct: 290 QPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYE 349
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
M P+ +T++ + AG E
Sbjct: 350 IMLEMPGKKILPNVVTYSTMADGYAKAGRLE 380
>gi|449443903|ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Cucumis sativus]
gi|449475521|ref|XP_004154479.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Cucumis sativus]
Length = 660
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 62/117 (52%), Gaps = 1/117 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R E+++A K+FN + + +P++ + ++ + K+ +I+ A E F ++++GL +
Sbjct: 275 RSGEIEVAHKLFNEM-ENAQIEPNVITLNTLVDGMCKHNRISTAVEFFRVMQQKGLKGNN 333
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
YT I + V ++KAME + M GC P + + LI L AG + ++V
Sbjct: 334 VTYTVFINAFCNVNNMNKAMEFLDEMSKDGCFPDAVVYYTLICGLAQAGRLDDASSV 390
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
Query: 105 QNELDLALKVF---NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
N +D A+K+F N V +V P+ +Y+ +I L K Q+ A L ++K G+ P
Sbjct: 487 NNNIDEAIKIFKEMNNVASKV--PPNTVIYNILIDSLCKQTQVNFALSLLDDMKFRGVMP 544
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
+T Y + +DKA + + M C P +T IL L GE +
Sbjct: 545 NTTTYNSIFKALRDKNWLDKAFKLMDRMVEQACNPDYITMEILTEWLSAVGEITKLKKFT 604
Query: 222 RDCIQYVE 229
+ C+ E
Sbjct: 605 QGCMNRTE 612
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 12/137 (8%)
Query: 77 SKLEE-GF-QSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDM 134
SKL+E GF R+C + ++E ++N+LD A + N + + KPD Y+ +
Sbjct: 392 SKLKEAGFCLDRVCYNV------LISEFCKKNKLDRAQEWLNEM-ELAGVKPDSVTYNTL 444
Query: 135 ILMLGKNKQIAMAEELFCEL-KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK--A 191
I K +A + ++ ++EGL P Y +I Y ID+A++ ++ M A
Sbjct: 445 ISYFSKIGNFKLAHKFMKKMTEEEGLSPTVFTYGALIHAYCLNNNIDEAIKIFKEMNNVA 504
Query: 192 SGCTPHKLTFTILIRNL 208
S P+ + + ILI +L
Sbjct: 505 SKVPPNTVIYNILIDSL 521
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG------LDPDTRVYTEMIGVY 173
K++ +P + + +I L K ++I A E+F ++K E + PDT +Y +I
Sbjct: 179 KDMNIQPTVITFGILINHLCKFRRIDDALEVFEKMKGEKEETKVFVAPDTIMYNTLIDGL 238
Query: 174 LQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
+VG ++A+ M++ C P TF LI +GE E+
Sbjct: 239 CKVGRQEEALCLMGKMRSDQCAPTTATFNCLINGYCRSGEIEV 281
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 14/119 (11%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKE-----VWYKPDLSLYSDMILMLGKNKQIAMAEE 149
L++ L + RR +D AL+VF ++ E V+ PD +Y+ +I L K + EE
Sbjct: 193 LINHLCKFRR---IDDALEVFEKMKGEKEETKVFVAPDTIMYNTLIDGLCK---VGRQEE 246
Query: 150 LFCELKKEGLD---PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
C + K D P T + +I Y + G I+ A + + M+ + P+ +T L+
Sbjct: 247 ALCLMGKMRSDQCAPTTATFNCLINGYCRSGEIEVAHKLFNEMENAQIEPNVITLNTLV 305
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 11/142 (7%)
Query: 96 LDTLTE-LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+TL + + + N + A++ F V ++ K + Y+ I + A E E+
Sbjct: 301 LNTLVDGMCKHNRISTAVEFFR-VMQQKGLKGNNVTYTVFINAFCNVNNMNKAMEFLDEM 359
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI------RNL 208
K+G PD VY +I Q G +D A +K +G ++ + +LI L
Sbjct: 360 SKDGCFPDAVVYYTLICGLAQAGRLDDASSVVSKLKEAGFCLDRVCYNVLISEFCKKNKL 419
Query: 209 ENAGE---EELVAAVRRDCIQY 227
+ A E E +A V+ D + Y
Sbjct: 420 DRAQEWLNEMELAGVKPDSVTY 441
>gi|15217756|ref|NP_171744.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806504|sp|Q9FZ19.2|PPR5_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g02420
gi|332189307|gb|AEE27428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 491
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ +I + K+++I A +L ++++E PD YT +IG +G DKA E
Sbjct: 243 KPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQPDKARE 302
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
+ MK GC P + IRN
Sbjct: 303 VLKEMKEYGCYPDVAAYNAAIRNF 326
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++PDL ++ ++L K AE F E+K +GL PD Y +I VY + I+KA
Sbjct: 210 FQPDLQTFN---ILLSGWKSSEEAEAFFEEMKGKGLKPDVVTYNSLIDVYCKDREIEKAY 266
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
+ + M+ TP +T+T +I L G+ + V ++ +Y +P+
Sbjct: 267 KLIDKMREEEETPDVITYTTVIGGLGLIGQPDKAREVLKEMKEYGCYPD 315
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 68/149 (45%), Gaps = 7/149 (4%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ E++ A K+ + +R+E PD+ Y+ +I LG Q A E+ E+K+ G PD
Sbjct: 258 KDREIEKAYKLIDKMREEE-ETPDVITYTTVIGGLGLIGQPDKAREVLKEMKEYGCYPDV 316
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE-----EELVA 218
Y I + + A + + M G +P+ T+ + R L A + E V
Sbjct: 317 AAYNAAIRNFCIARRLGDADKLVDEMVKKGLSPNATTYNLFFRVLSLANDLGRSWELYVR 376
Query: 219 AVRRDCIQYVEFPERFLEEVYQKHRKTQV 247
+ +C+ + FL +++++H K +
Sbjct: 377 MLGNECLPNTQ-SCMFLIKMFKRHEKVDM 404
>gi|13620171|emb|CAC36392.1| hypothetical protein [Capsella rubella]
Length = 150
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 49/93 (52%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
+V PD+ Y+ MI ++ AEE+F E+ ++G P+ Y +I + G
Sbjct: 28 KVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSLIRGFCMAGKFK 87
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+A + M++ GC P+ + ++ L+ NL NAG+
Sbjct: 88 EACSLLKEMESRGCNPNFVVYSTLVNNLRNAGK 120
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%)
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
E+ K G PD YT MI Y+ G ++KA E ++ M G P+ T+ LIR AG
Sbjct: 25 EMVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSLIRGFCMAG 84
Query: 213 E 213
+
Sbjct: 85 K 85
>gi|384247929|gb|EIE21414.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
Length = 448
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 6/126 (4%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ NEL+LAL V+ + +E P+L Y+ +I + GK A ++ L+ +G P+
Sbjct: 120 KANELELALDVYGQLLRE-GCTPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEV 178
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG--EEELVA--- 218
R Y ++ + G + A+ YE M A G P T+T LI G EE L
Sbjct: 179 RTYNTILSACNRSGQPEHALRVYERMLADGAQPTATTYTALISAYGKTGKIEEALRIFQD 238
Query: 219 AVRRDC 224
VRR C
Sbjct: 239 MVRRGC 244
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 99 LTELRRQNELDLALKVFNFVRK-----EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
L EL + + A ++F+++R E+ + D+ Y+ +I G ++Q+ A EL E
Sbjct: 39 LKELHKVGLSNRASELFDWLRSLPDNHELAHLCDVYTYTTIISQCGSHQQLRKALELVAE 98
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
++ G+ + Y+ ++ V ++ ++ A++ Y + GCTP+ +T+ ILI
Sbjct: 99 MRGHGVVCNVHTYSALMNVCIKANELELALDVYGQLLREGCTPNLVTYNILI 150
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ Y+ ++ ++ Q A ++ + +G P YT +I Y + G I++A+
Sbjct: 175 KPEVRTYNTILSACNRSGQPEHALRVYERMLADGAQPTATTYTALISAYGKTGKIEEALR 234
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
++ M GC + +T++ LI E AG +L
Sbjct: 235 IFQDMVRRGCERNVITYSSLISACEKAGRWQL 266
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 104 RQNELDLALKVF-NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
+ +++ AL++F + VR+ + ++ YS +I K + +A EL E+ ++ P+
Sbjct: 225 KTGKIEEALRIFQDMVRRGC--ERNVITYSSLISACEKAGRWQLALELLDEMHRDNCKPN 282
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
T + ++ Q G A + +E M + GC P +++ ILI + +
Sbjct: 283 TVTFNALLSACAQGGQWKAAQDVFEQMPSCGCKPDAVSYAILISAFDRGNQ 333
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L+ R + + AL+V+ + + +P + Y+ +I GK +I A +F ++ + G
Sbjct: 185 LSACNRSGQPEHALRVYERMLAD-GAQPTATTYTALISAYGKTGKIEEALRIFQDMVRRG 243
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ + Y+ +I + G A+E + M C P+ +TF L+ G+
Sbjct: 244 CERNVITYSSLISACEKAGRWQLALELLDEMHRDNCKPNTVTFNALLSACAQGGQ 298
>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 618
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LLD L + EL AL++F ++K + +Y+ +I + ++ A LFC L
Sbjct: 460 LLDGLCD---NGELQKALEIFEKMQKSRMI-LGIGIYNIIIHGMCNASKVDDAWSLFCSL 515
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
+G+ PD Y MIG + G + +A + MK GC P T+ ILIR
Sbjct: 516 SVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNILIR 567
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ YS +I K K++ LFCE+ +GL DT Y ++ + Q G ++ A E
Sbjct: 381 EPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKE 440
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
++ M + G P +T+ IL+ L + GE
Sbjct: 441 LFQEMVSRGVPPSVVTYGILLDGLCDNGE 469
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 48/82 (58%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ +S +I + K ++ A+EL+ E+ G+ PDT Y+ +I + + + +A +
Sbjct: 312 PNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQM 371
Query: 186 YETMKASGCTPHKLTFTILIRN 207
+ M + GC P+ +T++ILI +
Sbjct: 372 LDLMVSKGCEPNIVTYSILINS 393
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 66/164 (40%), Gaps = 14/164 (8%)
Query: 98 TLTELRRQNELDLALKVFNFVRK--EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELK 155
L + + LAL +F RK E K + YS +I L K+ + A LF E++
Sbjct: 215 VLNRMCKSGNTALALDLF---RKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEME 271
Query: 156 KEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE-- 213
+G+ D Y+ +IG G D + M P+ +TF+ LI G+
Sbjct: 272 MKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLL 331
Query: 214 ------EELVA-AVRRDCIQYVEFPERFLEEVYQKHRKTQVDLV 250
E+VA + D I Y + F +E +DL+
Sbjct: 332 EAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLM 375
>gi|356561416|ref|XP_003548977.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 456
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 65/119 (54%), Gaps = 6/119 (5%)
Query: 103 RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
+ QN LD A +F KE +P+ Y+ +I L K ++ A++LF +L +G D
Sbjct: 309 KNQN-LDKATALF-MKMKEWGIQPNKYTYTALIDGLCKGGRLKDAQKLFQDLLVKGCCID 366
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL----ENAGEEELV 217
Y MIG + GM+D+A+ M+ +GC P+ +TF I+IR+L EN E+L+
Sbjct: 367 VCTYNVMIGGLCKEGMLDEALAIKSKMEDNGCIPNVVTFEIIIRSLFKKDENDKAEKLL 425
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
P++ Y+ +I L K ++ A+ L E+ G D YT ++ + + +DKA
Sbjct: 259 NPNVYTYAILIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLDKATA 318
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ MK G P+K T+T LI L G
Sbjct: 319 LFMKMKEWGIQPNKYTYTALIDGLCKGG 346
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
++ +Y+ +I L K+K + A + + E+ G+ P+ YT +IG + G + A
Sbjct: 191 NVVMYNTIIDGLCKDKLVNEAYDFYSEMNARGIFPNVITYTTLIGGFCLAGQLTGAFSLL 250
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGE 213
M P+ T+ ILI L G+
Sbjct: 251 NEMILKNINPNVYTYAILIDALCKEGK 277
>gi|357444861|ref|XP_003592708.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
gi|355481756|gb|AES62959.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
Length = 1430
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Query: 107 ELDLALKVFNFVRKEVW---YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
E+D A+K+F K++W + PD+ ++ +I L K + AE+LF EL K GL P
Sbjct: 581 EVDHAMKIF----KDLWSHGHCPDVVCFNVLIRGLCKVNRFTEAEDLFHELVKRGLSPSV 636
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y I + + G +DKAM M P +T+T L+
Sbjct: 637 VTYNLFIDCWCKNGNVDKAMAHLFRMTKEDKVPSVVTYTTLV 678
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 45/70 (64%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+++ +D AL++F+ +R+E + PD+SLY +I L KNK A LF E+K+ G+ PD
Sbjct: 277 KESRVDKALQLFDKMRREDSFTPDVSLYDVLIGGLCKNKDTDRAISLFSEMKEFGVRPDI 336
Query: 164 RVYTEMIGVY 173
+ T++I +
Sbjct: 337 GILTKLISCF 346
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 78/161 (48%), Gaps = 8/161 (4%)
Query: 59 LSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELR-------RQNELDLA 111
L EA + + M +KSS+ +E + +K + +T + ++LDLA
Sbjct: 386 LMDEAYRLIRMMIQSKSSTDSDENRMDVFFKTVKRMVFPNITSFSIVIDGFLKNDQLDLA 445
Query: 112 LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIG 171
L +FN +R+ V KP + +Y+++I L K+ ++ + EL E+K+ G++P Y + G
Sbjct: 446 LSLFNDMRRFV-DKPTILIYNNLIDSLCKSNRLEKSYELLREMKELGIEPTHFTYNSIYG 504
Query: 172 VYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ + A + M + G P T+L++ L + G
Sbjct: 505 CLCKRKDVSAACVMLKEMGSCGHGPWIKHTTLLVKELCDHG 545
>gi|296081889|emb|CBI20894.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 6/130 (4%)
Query: 88 CRLLKA--DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIA 145
CR +++ L++ + E R E+ L E +KP L Y+ ++ L K
Sbjct: 69 CRTVRSRTKLMNIMIEKGRPQEVQSILDSI----IEGGHKPSLVTYTTLLAALTIQKHFD 124
Query: 146 MAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ ++++ G++PD+ + +I + + G + +AM+ + MK SG P TF LI
Sbjct: 125 SIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLI 184
Query: 206 RNLENAGEEE 215
+ AGE E
Sbjct: 185 KGYGIAGEPE 194
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E KPD+ +S ++ + E+F ++ K + PD VY+ + Y++ G
Sbjct: 345 EEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEP 404
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+KA E M SG P+ + FT +I +AG E
Sbjct: 405 EKAEEILNAMIKSGFHPNVVIFTTIINGWCSAGRME 440
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD +YS + + + AEE+ + K G P+ ++T +I + G ++ A++
Sbjct: 385 QPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVVIFTTIINGWCSAGRMEYAIK 444
Query: 185 TYETMKASGCTPHKLTFTILI 205
+E M G P+ TF LI
Sbjct: 445 IFEKMCECGIAPNLKTFETLI 465
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 115 FNFVRKEVWYKPDLSLYSDMILML-------GKNKQIAMAEELFCELKKEGLDPDTRVYT 167
F + K++ +P+L +++ +I G N+ + + EE G+ PD ++
Sbjct: 305 FVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEF-------GVKPDVITFS 357
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ + G +DK E ++ M + P ++IL + AGE E
Sbjct: 358 TIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPE 405
>gi|225456802|ref|XP_002275673.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
chloroplastic [Vitis vinifera]
gi|147821419|emb|CAN76897.1| hypothetical protein VITISV_010606 [Vitis vinifera]
Length = 692
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 125 KPDLSLYSDMILMLGKNKQIA-MAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+P++ Y+ +I G+ K+++ MA + F +KK G+ P + YT +I Y G +KA
Sbjct: 415 EPNVKSYTCLISAYGRQKKMSDMAADAFLRMKKVGIKPTSHSYTALIHAYSVGGWHEKAY 474
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+E MK G P T+T L+ AG+ + + +
Sbjct: 475 TAFENMKREGIKPSIETYTALLDAFRRAGDTQTLMKI 511
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 1/110 (0%)
Query: 103 RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
R++ D+A F K+V KP Y+ +I A F +K+EG+ P
Sbjct: 430 RQKKMSDMAADAF-LRMKKVGIKPTSHSYTALIHAYSVGGWHEKAYTAFENMKREGIKPS 488
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
YT ++ + + G M+ ++ M + ++TF IL+ G
Sbjct: 489 IETYTALLDAFRRAGDTQTLMKIWKLMLSDKIEGTRVTFNILLDGFAKQG 538
>gi|255660950|gb|ACU25644.1| pentatricopeptide repeat-containing protein [Casselia glaziovii]
Length = 481
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I + K++ AE F E+K ++P YT +I Y+ V +D A+
Sbjct: 183 PDVITYNTLINGYYRVKKMEEAERYFVEMKGRNIEPTVITYTTLIKGYVSVDRVDDALSL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ +T++ L+ L NA
Sbjct: 243 MEEMKGFGIKPNAITYSTLLPGLCNA 268
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y + ++ + + MA+ F ++ EG++P + MI + G ++ A +E MK
Sbjct: 118 YDALFKVILRRGRFMMAKRYFNKMLNEGIEPTRHTFNVMIWGFFLSGKVETANXFFEDMK 177
Query: 191 ASGCTPHKLTFTILI 205
+ TP +T+ LI
Sbjct: 178 SRDITPDVITYNTLI 192
>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
Length = 609
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
+E +PD Y+ ++ L + + + A + E++ GL PDT YT +I Y + +
Sbjct: 372 RERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEEL 431
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
D AME + M A G ++T+T LI L AG
Sbjct: 432 DMAMEIKQNMVAEGVGLDEVTYTALISGLSKAG 464
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 10/136 (7%)
Query: 101 ELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD 160
+L R EL A VF+ ++ + +S ++ MI + + + AE L + + G+
Sbjct: 249 DLVRLGELASAQNVFDEMQSRGVRRTVVS-FNTMISGMCRAGDLDGAETLHRRMSEAGVT 307
Query: 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA-- 218
PD Y +I +VG I+ A +E M G P+ + FTILI G+ E +
Sbjct: 308 PDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLEL 367
Query: 219 -------AVRRDCIQY 227
VR D + Y
Sbjct: 368 HREMRERGVRPDAVTY 383
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 104 RQNELDLALKVF-NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
++ ELD+A+++ N V + V D Y+ +I L K + A AE + E+ + GL+PD
Sbjct: 427 KEEELDMAMEIKQNMVAEGVGL--DEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPD 484
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
YT +I + + G + + + M+ G P +T+ +++ G+
Sbjct: 485 NTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQ 535
>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
Length = 818
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Query: 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
+ +LD L ++ R +D A+++ + + K KPD Y+ ++ L +Q AEEL
Sbjct: 430 SSILDGLCDVGR---VDDAVELLSRL-KSYGCKPDTIAYTTVLKGLCSTEQWERAEELMA 485
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210
E+ PD + ++ Q G++D+A+ E M +GC+P +T+ +I L N
Sbjct: 486 EMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCN 543
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 48/91 (52%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ ++ ++ L + AE+L + + PD + +I Q G++ +A+E
Sbjct: 563 KPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIE 622
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
T + M +GC P+ T++I++ L AG+ +
Sbjct: 623 TLKIMAENGCVPNSSTYSIVVDALLKAGKAQ 653
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ + + ++D AL + + + KPD Y+ ++ L +++ EEL E+
Sbjct: 328 INAMCNEGDVDEALNILSNLPSH-GCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNN 386
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
PD + ++ Q G++D+A+E + M GC +T++ ++ L + G
Sbjct: 387 CAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVG 440
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL VF+ + P + YS ++ K A L E++ +G +PD Y +I
Sbjct: 270 ALAVFDDMLHR-GCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLI 328
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
G +D+A+ + + GC P +T+T ++++L
Sbjct: 329 NAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSL 366
Score = 43.5 bits (101), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+T L +Q +D A++V + + + D+ YS ++ L ++ A EL LK G
Sbjct: 398 VTSLCQQGLVDRAIEVVDHMSEHGCVA-DIVTYSSILDGLCDVGRVDDAVELLSRLKSYG 456
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
PDT YT ++ ++A E M S C P ++TF ++ +L G
Sbjct: 457 CKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKG 510
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD + Y + + + A + ++ GL PDT Y +++ + + D A++
Sbjct: 702 PDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDC 761
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ M +SGC P + T+ IL+ L G
Sbjct: 762 FAHMVSSGCMPDESTYVILLEALAYGG 788
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PD ++ +I L +I A +F ++ G P Y+ ++ + +AM
Sbjct: 247 FPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAM 306
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ M+A GC P +T+ +LI + N G+
Sbjct: 307 ALLDEMRAKGCEPDIVTYNVLINAMCNEGD 336
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
PD ++ ++ L + + A + ++ + G PD Y +I ID AME
Sbjct: 493 PPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAME 552
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
+++ GC P +TF L++ L
Sbjct: 553 LLSDLQSCGCKPDIVTFNTLLKGL 576
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L ++ +D A++V + E PD+ Y+ +I L I A EL +L+ G
Sbjct: 503 VASLCQKGLVDRAIRVVEQM-SENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCG 561
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
PD + ++ V + A + M S C P +LTF +I +L G
Sbjct: 562 CKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKG 615
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R++ D A+++ V ++ PD + Y+D++L ++++ +A + F + G PD
Sbjct: 716 REDGTDRAVRMLRRV-QDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDE 774
Query: 164 RVYTEMIGVYLQVGMIDKA 182
Y ++ G++D+A
Sbjct: 775 STYVILLEALAYGGLLDEA 793
>gi|356509602|ref|XP_003523536.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Glycine max]
Length = 598
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R NE+D A + V + PD+ Y+ +I K ++ LF E+ + G P
Sbjct: 221 LCRINEVDRARSLLKEVCLNGEFAPDVVSYTTIISGYCKFSKMEEGNLLFGEMIRSGTAP 280
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+T + +IG + ++G + A+ YE M GC P TFT LI G+
Sbjct: 281 NTFTFNALIGGFGKLGDMASALALYEKMLVQGCVPDVATFTSLINGYFRLGQ 332
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 121 EVWYKPD-----LSLYSDMILMLG--KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY 173
++W+K + +LY+ +L+ G N ++ A ++ L + + P +Y +I Y
Sbjct: 338 DMWHKMNDKNIGATLYTFSVLVSGLCNNNRLHKARDILRLLNESDIVPQPFIYNPVIDGY 397
Query: 174 LQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ G +D+A + M+ + C P KLTFTILI
Sbjct: 398 CKSGNVDEANKIVAEMEVNRCKPDKLTFTILI 429
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+ ++ +I GK +A A L+ ++ +G PD +T +I Y ++G + +AM+
Sbjct: 280 PNTFTFNALIGGFGKLGDMASALALYEKMLVQGCVPDVATFTSLINGYFRLGQVHQAMDM 339
Query: 186 YETMKASGCTPHKLTFTILIRNLEN 210
+ M TF++L+ L N
Sbjct: 340 WHKMNDKNIGATLYTFSVLVSGLCN 364
>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
LR + LD LK+ PD + Y+ +++ +N + AE +F E+ +G+ P
Sbjct: 184 LRAKGVLDEMLKI--------GMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVP 235
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
D ++ +IG+ + G +D+A++ + MK +G P + +TILI
Sbjct: 236 DLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILI 279
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL +S +I +L KN + A + F ++K GL PD +YT +IG + + G++ +A++
Sbjct: 235 PDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKV 294
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ M GC +T+ ++ L
Sbjct: 295 RDEMLEQGCVLDVVTYNTILNGL 317
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ Y+ ++ L K K ++ A+ELF E+ + G+ PD +T +I Y + G ++KA+ +
Sbjct: 306 DVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLF 365
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
E M P +T+ LI E E V + D I +P
Sbjct: 366 EMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPN 411
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
Query: 99 LTELRRQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
L L + +DLA +++ VR V + ++ + MI L KN++I + +++++
Sbjct: 69 LGGLVKVGWVDLAWEIYQEVVRSGV--QVNVYTLNIMINALCKNQKIENTKSFLSDMEEK 126
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
G+ PD Y +I Y + G++++A E ++M G P T+ +I L G+
Sbjct: 127 GVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGK 182
>gi|255660910|gb|ACU25624.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
Length = 484
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ MI + K+ AE+ F E+K ++P YT +I Y+ V +D A+
Sbjct: 183 PDVVTYNTMINGYYRVKKXEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
E MK G P+ + ++ L+ L NA
Sbjct: 243 VEEMKGFGIKPNAIXYSTLLPGLCNA 268
>gi|57863818|gb|AAW56871.1| unknown protein [Oryza sativa Japonica Group]
gi|222631991|gb|EEE64123.1| hypothetical protein OsJ_18955 [Oryza sativa Japonica Group]
Length = 433
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 67/122 (54%), Gaps = 5/122 (4%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
+LD L + R +++ +K+ + E+ + PD+ Y+ +I L + ++ + E+
Sbjct: 239 ILDMLGKAGRVDQMLQEVKLMD----ELGHSPDIVTYNTVINCLRRLGRLDQCKIFAREM 294
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
+ G+DPD R YT +I ++ + G I +A+E ++ MK S P + LI +L+ AG+
Sbjct: 295 VERGIDPDLRTYTALIDIFGRAGHITEALEMFDQMKRSH-QPSIYVYRALISDLKKAGQF 353
Query: 215 EL 216
EL
Sbjct: 354 EL 355
>gi|302791627|ref|XP_002977580.1| hypothetical protein SELMODRAFT_107283 [Selaginella moellendorffii]
gi|300154950|gb|EFJ21584.1| hypothetical protein SELMODRAFT_107283 [Selaginella moellendorffii]
Length = 555
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ L++ +I LG+ ++ +A+ +F E+ GL+P + +I +Y +VG +DKA++
Sbjct: 162 KPNVVLFNTLIGTLGRAGKVTLAKGMFDEMATYGLEPSEITLSILIDMYTKVGALDKALD 221
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE----EELVA 218
Y+T+K L + L+++ +G E L+A
Sbjct: 222 VYDTIKQKKWKLDVLVYNTLLKSCVESGNIQRAESLIA 259
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 65/126 (51%), Gaps = 4/126 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D T++ LD AL V++ ++++ W K D+ +Y+ ++ ++ I AE L E+
Sbjct: 206 LIDMYTKV---GALDKALDVYDTIKQKKW-KLDVLVYNTLLKSCVESGNIQRAESLIAEM 261
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
+ E PD Y ++ VY GM+ + ++ +K P +T+LI+ + AG+
Sbjct: 262 EMEKQWPDHMTYGILMNVYATKGMVAEVRAMFDKLKNLAVFPKAAFYTMLIKASKQAGDF 321
Query: 215 ELVAAV 220
+ + +
Sbjct: 322 DRIPGI 327
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
YS MI + GK + A A +L+ ++K PD + + VY +VG + + M+
Sbjct: 98 YSAMIDLYGKAGRTAEAMDLYQTMRKNNWKPDLVSFGVIANVYSRVGDYQAILRLFRDME 157
Query: 191 ASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227
+ P+ + F LI L AG+ L + + Y
Sbjct: 158 QAEIKPNVVLFNTLIGTLGRAGKVTLAKGMFDEMATY 194
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 38/73 (52%)
Query: 151 FCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210
F L++ G+ D Y+ MI +Y + G +AM+ Y+TM+ + P ++F ++
Sbjct: 83 FHRLRETGVSFDGVTYSAMIDLYGKAGRTAEAMDLYQTMRKNNWKPDLVSFGVIANVYSR 142
Query: 211 AGEEELVAAVRRD 223
G+ + + + RD
Sbjct: 143 VGDYQAILRLFRD 155
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A+ ++ +RK W KPDL + + + + LF ++++ + P+ ++ +I
Sbjct: 114 AMDLYQTMRKNNW-KPDLVSFGVIANVYSRVGDYQAILRLFRDMEQAEIKPNVVLFNTLI 172
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
G + G + A ++ M G P ++T +ILI
Sbjct: 173 GTLGRAGKVTLAKGMFDEMATYGLEPSEITLSILI 207
>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+++ YS +I K+ + A E + + G P+ YT M+ V + M D+A
Sbjct: 382 PNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSL 441
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
E M GCTP+ +TF I+ L G E
Sbjct: 442 VEKMTLEGCTPNTITFNTFIKGLCGNGRVE 471
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 103 RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
+R + ALK+F + E KP + +Y+ ++ L + M L+ +KK+GL P+
Sbjct: 120 KRVGSAEQALKMF-YRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPN 178
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
Y ++ + +D A + + M GC P +T+T ++ +L AG+
Sbjct: 179 VFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGK 229
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+KP + +Y+ +I + K +I +A +L E+ G+DP+ Y+ +I G ++ A
Sbjct: 240 FKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAF 299
Query: 184 ETYETMKASGCTPHKLTFTILIR 206
+ M GC + TFT LI+
Sbjct: 300 ALFAQMFLRGCDANIHTFTPLIK 322
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+ ++ L KN ++ A +LF E+ +G PD YT M+ + G ID A E
Sbjct: 177 PNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL 236
Query: 186 YETMKAS 192
K S
Sbjct: 237 AGRFKPS 243
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ M+ +L KN A L ++ EG P+T + I G ++ AM+
Sbjct: 416 RPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMK 475
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
E M+ GC P+ T+ L+ L
Sbjct: 476 LLERMQGHGCLPNITTYNELLDAL 499
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 45/81 (55%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ +I L N + A ++ ++++ G P+ Y+ +I + + G + A E
Sbjct: 346 EPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASE 405
Query: 185 TYETMKASGCTPHKLTFTILI 205
T+ M + GC P+ +T+T ++
Sbjct: 406 TWNRMISHGCRPNVVTYTCMV 426
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ YS +I L + + +A LF ++ G D + +T +I G + +A++
Sbjct: 277 PNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDL 336
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ M GC P+ + + LI L + G E
Sbjct: 337 WKLMIQDGCEPNVVAYNTLIHGLCSNGSLE 366
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 147 AEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
A +L+ + ++G +P+ Y +I G +++A++ + M+ SGC P+ T++ILI
Sbjct: 333 ALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILID 392
Query: 207 NLENAGEEELVAA 219
+G +LV A
Sbjct: 393 GFAKSG--DLVGA 403
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 48/100 (48%)
Query: 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKK 156
D L L+ L L F+ + ++ S Y MI LG+ ++ M + + ++K
Sbjct: 43 DVLKRLKTDRNLSSVLGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKM 102
Query: 157 EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP 196
+G++ ++ +I Y +VG ++A++ + + GC P
Sbjct: 103 DGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKP 142
Score = 37.0 bits (84), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 46/93 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+++ Y++++ L + + A LF E++ L P+ Y ++ + + GM+ +A++
Sbjct: 487 PNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQL 546
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
+ G P +T+ +I G+ ++ A
Sbjct: 547 FGKALVRGTAPDSITYNTMIHAYCKQGKVKIAA 579
>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+++ YS +I K+ + A E + + G P+ YT M+ V + M D+A
Sbjct: 382 PNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSL 441
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
E M GCTP+ +TF I+ L G E
Sbjct: 442 VEKMTLEGCTPNTMTFNTFIKGLCGNGRVE 471
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 103 RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
+R + ALK+F + E KP + +Y+ ++ L + M L+ +KK+GL P+
Sbjct: 120 KRVGSAEQALKMF-YRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPN 178
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
Y ++ + +D A + + M GC P +T+T ++ +L AG+
Sbjct: 179 VFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGK 229
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+KP + +Y+ +I + K +I +A +L E+ G+DP+ Y+ +I G ++ A
Sbjct: 240 FKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAF 299
Query: 184 ETYETMKASGCTPHKLTFTILIR 206
+ M GC + TFT LI+
Sbjct: 300 ALFAQMFLRGCDANIHTFTPLIK 322
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ M+ +L KN A L ++ EG P+T + I G ++ AM+
Sbjct: 416 RPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMK 475
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
E M+ GC P+ T+ L+ L
Sbjct: 476 LLERMQGHGCLPNITTYNELLDAL 499
Score = 43.5 bits (101), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+ ++ L KN ++ A +LF E+ +G PD YT M+ + G ID A E
Sbjct: 177 PNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL 236
Query: 186 YETMKAS 192
K S
Sbjct: 237 AGRFKPS 243
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 45/81 (55%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ +I L N + A ++ ++++ G P+ Y+ +I + + G + A E
Sbjct: 346 EPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASE 405
Query: 185 TYETMKASGCTPHKLTFTILI 205
T+ M + GC P+ +T+T ++
Sbjct: 406 TWNRMISHGCRPNVVTYTCMV 426
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ YS +I L + + +A LF ++ G D + +T +I G + +A++
Sbjct: 277 PNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDL 336
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ M GC P+ + + LI L + G E
Sbjct: 337 WKLMIQDGCEPNVVAYNTLIHGLCSNGSLE 366
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 147 AEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
A +L+ + ++G +P+ Y +I G +++A++ + M+ SGC P+ T++ILI
Sbjct: 333 ALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILID 392
Query: 207 NLENAGEEELVAA 219
+G +LV A
Sbjct: 393 GFAKSG--DLVGA 403
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 48/100 (48%)
Query: 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKK 156
D L L+ L L F+ + ++ S Y MI LG+ ++ M + + ++K
Sbjct: 43 DVLKRLKTDRNLSSVLGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKM 102
Query: 157 EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP 196
+G++ ++ +I Y +VG ++A++ + + GC P
Sbjct: 103 DGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKP 142
Score = 37.0 bits (84), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 46/93 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+++ Y++++ L + + A LF E++ L P+ Y ++ + + GM+ +A++
Sbjct: 487 PNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQL 546
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
+ G P +T+ +I G+ ++ A
Sbjct: 547 FGKALVRGTAPDSITYNTMIHAYCKQGKVKIAA 579
>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
Length = 543
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L + R E L+ V+++V +P+L Y+ +I K +A +L +
Sbjct: 214 LIDGLCKSYRMEEARQLLETM--VKRKV--RPNLVTYNTLIYGYCKTGCTGLAHQLIERM 269
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ G PD + +I + Q IDKA E MK C P+ +T+ +LI L +AG
Sbjct: 270 IQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAG 327
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+++++D A +V + ++K + P+L Y+ +I L + A EL E+ G+ PD
Sbjct: 290 QKSKIDKACEVLHLMKKGLC-APNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDI 348
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTIL 204
Y +IG++ + I++A + M G P +++ L
Sbjct: 349 ITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTL 389
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 46/93 (49%)
Query: 113 KVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGV 172
+ + R+ V PD L++ ++ L K Q++ A ++ E+ + G+ PD Y +I
Sbjct: 158 RAMQYFRESVECAPDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDG 217
Query: 173 YLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
+ +++A + ETM P+ +T+ LI
Sbjct: 218 LCKSYRMEEARQLLETMVKRKVRPNLVTYNTLI 250
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 11/122 (9%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYK---PDLSLYSDMILMLGKNKQIAMAEELF 151
LL TL + RR ++ A ++F R E+ + + Y+ +I K + A +L
Sbjct: 75 LLRTLVKARRHHQ---AYQIF---RDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQLL 128
Query: 152 CELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
E+K+ G PD ++ ++ G + +AM+ + ++ C P + F IL+ L A
Sbjct: 129 AEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFR--ESVECAPDSVLFNILVHGLCKA 186
Query: 212 GE 213
+
Sbjct: 187 NQ 188
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I + +N QI A ++ + + G+ PD Y + L+ D+A
Sbjct: 346 PDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFAL 405
Query: 186 YETMKASGCTPHKLTFTILI------RNLENAGEEELVAAVRR 222
+ M +G P+ TF L+ R L+ A L+A +RR
Sbjct: 406 LDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEA--RHLLAVMRR 446
>gi|255541714|ref|XP_002511921.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549101|gb|EEF50590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 248
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+N LD A ++ N + +E +PD Y+ +I GK I +A + ++ K+GL P
Sbjct: 57 NKNRLDKAREMLNDM-EEAGLEPDTITYNTLISYFGKIGDIKVAHRMMKQMIKDGLQPTV 115
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASG--CTPHKLTFTILIRNLENAGEEELVAAVR 221
Y +I Y G +D+AM+ ++ M A+ P+ + + ILI +L + EL ++
Sbjct: 116 VTYGSLIHAYCLNGNVDEAMKIFKAMDAAASRVAPNNVIYNILIDSLCENNDIELALSLM 175
Query: 222 RD 223
D
Sbjct: 176 DD 177
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD +Y +I L + +++ A + +LK+ G PD Y +IG + +DKA E
Sbjct: 8 PDAMVYYKLISGLSQARRMDDAASVLTKLKEAGFCPDIVCYNILIGGFCNKNRLDKAREM 67
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
M+ +G P +T+ LI G+
Sbjct: 68 LNDMEEAGLEPDTITYNTLISYFGKIGD 95
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+ L++ RR +D A V + KE + PD+ Y+ +I ++ A E+ ++
Sbjct: 16 LISGLSQARR---MDDAASVLTKL-KEAGFCPDIVCYNILIGGFCNKNRLDKAREMLNDM 71
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
++ GL+PDT Y +I + ++G I A + M G P +T+ LI
Sbjct: 72 EEAGLEPDTITYNTLISYFGKIGDIKVAHRMMKQMIKDGLQPTVVTYGSLI 122
Score = 43.1 bits (100), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Query: 105 QNELDLALKVFNFVRKEVW-YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+D A+K+F + P+ +Y+ +I L +N I +A L +++ +G+ P+T
Sbjct: 128 NGNVDEAMKIFKAMDAAASRVAPNNVIYNILIDSLCENNDIELALSLMDDMRVKGVKPNT 187
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
Y M + +++A+E + M C P +T IL L GE E
Sbjct: 188 GTYNAMFKGLRERKWLNQALELMDRMMEQPCNPDYITMEILTEWLSAVGETE 239
>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Glycine max]
Length = 756
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ +I L K+K++ A +L ++ EGL PD YT M+ + Q G I +A + + M
Sbjct: 515 YNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMT 574
Query: 191 ASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
+GC P +T+ LI L AG ++ + + R
Sbjct: 575 LNGCEPDIVTYGTLIGGLCKAGRVDVASKLLR 606
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Query: 99 LTELRRQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
++ L + E+D A+++ + V ++ +P+ Y+ +I L K + A EL L +
Sbjct: 344 ISGLCKLGEIDEAVEILHHMVSRDC--EPNTVTYNTLIGTLCKENHVEAATELARVLTSK 401
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
G+ PD + +I + AME +E MK GC P + T++ILI +L
Sbjct: 402 GVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESL 452
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 18/149 (12%)
Query: 62 EAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKE 121
EA++ +H M +++ + + I L K + ++ TEL R V
Sbjct: 355 EAVEILHHM-VSRDCEPNTVTYNTLIGTLCKENHVEAATELAR-------------VLTS 400
Query: 122 VWYKPDLSLYSDMI--LMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
PD+ ++ +I L L N++IAM ELF E+K++G DPD Y+ +I +
Sbjct: 401 KGVLPDVCTFNSLIQGLCLTSNREIAM--ELFEEMKEKGCDPDEFTYSILIESLCSERRL 458
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNL 208
+A+ + M+ SGC + + + LI L
Sbjct: 459 KEALMLLKEMELSGCARNVVVYNTLIDGL 487
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 88 CRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMA 147
C L + + L ++ ++ AL+ F+ +E + PD ++ ++ L + I
Sbjct: 265 CELTSVSVNVLVNGLCKEGRIEEALR---FIYEEEGFCPDQVTFNALVNGLCRTGHIKQG 321
Query: 148 EELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN 207
E+ + ++G + D Y +I ++G ID+A+E M + C P+ +T+ LI
Sbjct: 322 LEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGT 381
Query: 208 L 208
L
Sbjct: 382 L 382
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+S ++ +I L K Q+ A + ++ GL PD + +T ++ +++ ++ A+
Sbjct: 197 PDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRI 256
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
E M SGC ++ +L+ L G E
Sbjct: 257 KELMVESGCELTSVSVNVLVNGLCKEGRIE 286
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R + L++ +F+ E ++ D+ Y+ +I L K +I A E+ + +P
Sbjct: 312 LCRTGHIKQGLEMMDFML-EKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEP 370
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+T Y +IG + ++ A E + + G P TF LI+ L
Sbjct: 371 NTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGL 417
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 43/95 (45%)
Query: 114 VFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY 173
+F + ++ KPD Y+ + +L K ++ + E L ++ + + PD + +I
Sbjct: 150 LFLLMERDFAVKPDTRFYNVALSLLVKANKLKLVETLHSKMVADAVPPDVSTFNILIRAL 209
Query: 174 LQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ + A+ E M G P + TFT L++
Sbjct: 210 CKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGF 244
Score = 37.0 bits (84), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 45/87 (51%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
++ +Y+ +I L KN ++ AE++F +++ G+ + Y +I + +++A +
Sbjct: 476 NVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLM 535
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGE 213
+ M G P K T+T +++ G+
Sbjct: 536 DQMIMEGLKPDKFTYTTMLKYFCQQGD 562
>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
Length = 1116
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%)
Query: 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
AD L L R E AL++F P + Y+ +I L K+ ++ ELF
Sbjct: 181 ADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFE 240
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
EL + G PD Y +I + G +++A + M + C P+ +T+++LI L G
Sbjct: 241 ELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVG 300
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + ++D A VF+ + Y P++ Y+ ++ L K ++ A + + +G+ P
Sbjct: 370 LCKCGQIDEACSVFDDMIAG-GYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTP 428
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
D Y+ ++ + + +D+A+E M + GCTP+ +TF +I L
Sbjct: 429 DVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGL 475
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L + + +E A VF+ + Y P++ Y+ ++ L K ++ A + +
Sbjct: 860 LIDGLCKCGQTDE---ACNVFDDMIAG-GYVPNVVTYNVLMNGLCKTDKMERAHAMIESM 915
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+G+ PD Y+ ++ + + +D+A+E M + GCTP+ +TF +I L
Sbjct: 916 VDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGL 969
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y ++ L + + A +L ELK G DPDT Y ++ + G ++A+
Sbjct: 670 PDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITV 729
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
E M G P +T+ LI +L AG+ E
Sbjct: 730 LEEMVGKGHHPDVVTYNTLIDSLCKAGDLE 759
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 119 RKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGL--DPDTRVYTEMIGVYLQV 176
RK P++ Y+ + L K A A EL L+ L PDT ++ +I +
Sbjct: 314 RKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKC 373
Query: 177 GMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
G ID+A ++ M A G P+ +T+ L+ L A + E
Sbjct: 374 GQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKME 412
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 118 VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGL--DPDTRVYTEMIGVYLQ 175
+RK P++ Y+ + L K +A A EL L+ L PDT ++ +I +
Sbjct: 807 MRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCK 866
Query: 176 VGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
G D+A ++ M A G P+ +T+ +L+ L
Sbjct: 867 CGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGL 899
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 111 ALKVFNFVRKEVWY--------KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
A K NF + + +PD+ + +I L K Q+ A ++ + G+ P+
Sbjct: 577 ACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPN 636
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
Y ++ + G I++A + E M +SGC P +T+ L+ L
Sbjct: 637 VVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYAL 682
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 10/146 (6%)
Query: 78 KLEEGFQSRICR---LLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDM 134
+L G SR C + ++D L + R E A ++F+ + + PD Y +
Sbjct: 451 ELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGE---AFQMFDDMALKHGLVPDKITYCTL 507
Query: 135 ILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGC 194
I L + + AE L + DPDT + I ++G + +A++ Y M
Sbjct: 508 IDGLFRTGRAGQAEALLDAMP----DPDTYAFNCCINGLSKLGDVSRALQVYNRMLELEL 563
Query: 195 TPHKLTFTILIRNLENAGEEELVAAV 220
P K+TF ILI AG E +A+
Sbjct: 564 VPDKVTFNILIAGACKAGNFEQASAL 589
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L + ++ AL+V+N + E+ PD ++ +I K A LF E+ +
Sbjct: 539 INGLSKLGDVSRALQVYNRML-ELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKN 597
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
L PD + +I + G ++ A + + M G P+ +T+ L+ L +G E
Sbjct: 598 LQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIE 654
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R + D AL++ + ++ W PD Y+ ++ L K+ Q A + E+ +G P
Sbjct: 682 LCRASRTDDALQLVSELKSFGW-DPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHP 740
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMK---ASGCTPHKLTFTILIRNLENAG 212
D Y +I + G +++A + M + C P+ +T+++LI L G
Sbjct: 741 DVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVG 794
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 3/112 (2%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L + NEL +++F + E + PD+ Y+ +I L K + A L ++
Sbjct: 223 INGLCKSNELGAGMELFEEL-VERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRS 281
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCT--PHKLTFTILIRNL 208
P+ Y+ +I +VG ID+A E + M C P+ +T+ + L
Sbjct: 282 CVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGL 333
>gi|125558723|gb|EAZ04259.1| hypothetical protein OsI_26403 [Oryza sativa Indica Group]
Length = 528
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD Y+ MI GK + A + F +++EG++PD + +I + + G D+A+E
Sbjct: 261 RPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIE 320
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ M+ S C T+ I+I L GEE+
Sbjct: 321 LFDEMRESNCPLGTTTYNIMINLL---GEEQ 348
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 5/122 (4%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
D A+++F+ +R E + Y+ MI +LG+ ++ E + E+K++GL P+ YT
Sbjct: 316 DRAIELFDEMR-ESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTT 374
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE----LVAAVRRDC 224
++ VY + G +A++ E MKA G P + L+ G + +V A+R D
Sbjct: 375 LVDVYGRSGRFKEAVDCIEAMKADGLKPSSTMYHALVNAYAQRGLADHALNVVKAMRADG 434
Query: 225 IQ 226
++
Sbjct: 435 LE 436
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE P++ Y+ ++ + G++ + A + +K +GL P + +Y ++ Y Q G+
Sbjct: 361 KEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSSTMYHALVNAYAQRGLA 420
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENA-GEEELVA 218
D A+ + M+A G T+++ +L NA GE+ +A
Sbjct: 421 DHALNVVKAMRADGLEAS----TVVLNSLINAFGEDRRIA 456
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
D AL V +R + + L S +I G++++IA A + +K+ GL PD YT
Sbjct: 421 DHALNVVKAMRADGLEASTVVLNS-LINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTT 479
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHK 198
++ ++V +K YE M SGC P +
Sbjct: 480 LMKALIRVEQFEKVPVIYEEMITSGCAPDR 509
Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 3/144 (2%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+ +L RR E + AL + F+ E+ KP Y+ ++ K + AE++ E+
Sbjct: 129 LISSLGSARRVAEAE-ALFLEFFLAGEI--KPRTRAYNALLKGYVKIGSLKNAEQVLDEM 185
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
+ G+ PD Y+ ++ Y + G + A + M+A G P F+ ++ + GE
Sbjct: 186 SQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEW 245
Query: 215 ELVAAVRRDCIQYVEFPERFLEEV 238
+ AV R+ P+R V
Sbjct: 246 QKAFAVLREMHASGVRPDRHFYNV 269
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 34/62 (54%)
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209
++C + L+PD +++++I + + + D A+E + +A G TP T LI +L
Sbjct: 75 MYCGGGESRLEPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLG 134
Query: 210 NA 211
+A
Sbjct: 135 SA 136
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,431,379,946
Number of Sequences: 23463169
Number of extensions: 124782229
Number of successful extensions: 348873
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4768
Number of HSP's successfully gapped in prelim test: 935
Number of HSP's that attempted gapping in prelim test: 315944
Number of HSP's gapped (non-prelim): 31359
length of query: 250
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 111
effective length of database: 9,097,814,876
effective search space: 1009857451236
effective search space used: 1009857451236
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 75 (33.5 bits)