BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025612
(250 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9STF9|PP266_ARATH Pentatricopeptide repeat-containing protein At3g46870
OS=Arabidopsis thaliana GN=At3g46870 PE=2 SV=1
Length = 257
Score = 114 bits (284), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 100/159 (62%), Gaps = 2/159 (1%)
Query: 52 PMWRSR-VLSSEAIQAVHAMK-LAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELD 109
P+WR + ++ EA+ + +K L + KL++ ++ + RLLK D+L + EL RQ E
Sbjct: 65 PLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEETA 124
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
LA+K+F ++K+ WY+PD+ +Y D+I+ L K+K++ A L+ ++KKE L PD++ YTE+
Sbjct: 125 LAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYTEV 184
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
I +L+ G AM YE M S P +L F +L++ L
Sbjct: 185 IRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGL 223
>sp|Q1PFH7|PPR89_ARATH Pentatricopeptide repeat-containing protein At1g62350
OS=Arabidopsis thaliana GN=At1g62350 PE=2 SV=1
Length = 196
Score = 98.2 bits (243), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 91/151 (60%), Gaps = 1/151 (0%)
Query: 59 LSSEAIQAVHAMK-LAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNF 117
+S E + A +K L S +L+ S + RLLK+DL+ L E +RQN++ L +K++
Sbjct: 1 MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60
Query: 118 VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177
VR+E+WY+PD+ Y DM++ML +NK++ ++++ +LKKE + D + +++ +L
Sbjct: 61 VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120
Query: 178 MIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ +AM Y M+ S P L F ++++ L
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGL 151
>sp|Q9SCP4|PP279_ARATH Pentatricopeptide repeat-containing protein At3g53170
OS=Arabidopsis thaliana GN=At3g53170 PE=2 SV=1
Length = 447
Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 86/166 (51%), Gaps = 11/166 (6%)
Query: 56 SRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVF 115
SR+L ++A AV ++ +S K L +L+ L E ++N ALK+F
Sbjct: 32 SRILRTDA--AVKGIERKANSEKY--------LTLWPKAVLEALDEAIKENRWQSALKIF 81
Query: 116 NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175
N +RK+ WY+P Y+ + +LG KQ A LF + EGL P VYT +I VY +
Sbjct: 82 NLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGK 141
Query: 176 VGMIDKAMETYETMKA-SGCTPHKLTFTILIRNLENAGEEELVAAV 220
++DKA T E MK+ S C P TFT+LI G +LV ++
Sbjct: 142 SELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSI 187
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 36/88 (40%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP+ Y ++ K + + + ++ + DT + +I Y Q G + E
Sbjct: 338 KPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKE 397
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
Y M+ C P K+TF +I+ G
Sbjct: 398 LYIQMEERKCKPDKITFATMIKTYTAHG 425
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 38/83 (45%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ +I GK +I +++F ++K +G+ P++ Y ++ Y + G++ K +
Sbjct: 309 YNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIV 368
Query: 191 ASGCTPHKLTFTILIRNLENAGE 213
S F +I AG+
Sbjct: 369 NSDVVLDTPFFNCIINAYGQAGD 391
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 40/97 (41%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ + +I G + + E + + G+ PD + +I + + GM K
Sbjct: 234 PDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGMYKKMCSV 293
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
+ M+ + +T+ I+I AG E + V R
Sbjct: 294 MDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFR 330
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D ++ +I G+ +A +EL+ ++++ PD + MI Y G+ D E
Sbjct: 375 DTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYTAHGIFDAVQELE 434
Query: 187 ETMKASG 193
+ M +SG
Sbjct: 435 KQMISSG 441
>sp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730,
chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2
SV=2
Length = 508
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 88/154 (57%), Gaps = 5/154 (3%)
Query: 56 SRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVF 115
+++ S +AI + + KS + ++G + + R + L + +T LR ++ A++VF
Sbjct: 82 TKIASRKAISIILRREATKSIIEKKKGSKKLLPRTVLESLHERITALRWES----AIQVF 137
Query: 116 NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175
+R+++WYKP++ +Y +I+MLGK KQ A ELF E+ EG + VYT ++ Y +
Sbjct: 138 ELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSR 197
Query: 176 VGMIDKAMETYETMKAS-GCTPHKLTFTILIRNL 208
G D A E MK+S C P T++ILI++
Sbjct: 198 SGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSF 231
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 40/89 (44%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD + + G N QI M E + + + G++P+ R + ++ Y + G K
Sbjct: 289 KPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYGKSGNYKKMSA 348
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
E M+ + +T+ ++I AG+
Sbjct: 349 VMEYMQKYHYSWTIVTYNVVIDAFGRAGD 377
Score = 38.5 bits (88), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 18/125 (14%)
Query: 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ-IAMAEELFCELK 155
D L+++RRQ +P+ Y+ +I GK K + M L L
Sbjct: 242 DLLSDMRRQG-----------------IRPNTITYNTLIDAYGKAKMFVEMESTLIQMLG 284
Query: 156 KEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ PD+ + + G I+ YE ++SG P+ TF IL+ + +G +
Sbjct: 285 EDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYGKSGNYK 344
Query: 216 LVAAV 220
++AV
Sbjct: 345 KMSAV 349
>sp|Q9SV96|PP358_ARATH Pentatricopeptide repeat-containing protein At4g39620,
chloroplastic OS=Arabidopsis thaliana GN=EMB2453 PE=2
SV=1
Length = 563
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 100/211 (47%), Gaps = 19/211 (9%)
Query: 25 RPQISLPSGKKIQALTVTCGLRDANKKPMWR------SRVLSSEAIQAVHAMK-LAKSSS 77
R ++L ++ +TCG + +K R +RVL + + + L K+
Sbjct: 30 RFSVNLGDARRSTRTRITCGAISSRRKLAERESAERENRVLVRSLMSRISDREPLVKTLD 89
Query: 78 KLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILM 137
K + + C LL EL + ++ L+VF +++K+ WY PD +YS +I +
Sbjct: 90 KYVKVVRCDHCFLL-------FEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISV 142
Query: 138 LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY----ETMKA-S 192
+GK Q MA LF E+K G PD VY +I +L KA+E + MK
Sbjct: 143 MGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIE 202
Query: 193 GCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
C P+ +T+ IL+R +G+ + V A+ +D
Sbjct: 203 RCQPNVVTYNILLRAFAQSGKVDQVNALFKD 233
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 40/81 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ ++ ++ ++ LF +L + PD + ++ Y + GMI +
Sbjct: 205 QPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEA 264
Query: 185 TYETMKASGCTPHKLTFTILI 205
M+++ C P +TF +LI
Sbjct: 265 VLTRMRSNECKPDIITFNVLI 285
Score = 37.7 bits (86), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ ++ +I GK ++ E+ F L + P + MI Y + MIDKA
Sbjct: 275 KPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEW 334
Query: 185 TYETMKASGCTPHKLTFTILI 205
++ M P +T+ +I
Sbjct: 335 VFKKMNDMNYIPSFITYECMI 355
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP L ++ MI+ GK + I AE +F ++ P Y MI +Y G + +A E
Sbjct: 310 KPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCGSVSRARE 369
Query: 185 TYETMKAS 192
+E + S
Sbjct: 370 IFEEVGES 377
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 38/86 (44%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ ++ ++ GKN I E + ++ PD + +I Y + +K +T
Sbjct: 241 PDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQT 300
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
++++ S P TF +I N A
Sbjct: 301 FKSLMRSKEKPTLPTFNSMIINYGKA 326
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 38/94 (40%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y P Y MI+M G ++ A E+F E+ + M+ VY + G+ +A
Sbjct: 344 YIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEAD 403
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
+ + A P T+ L + A +E V
Sbjct: 404 KLFHNASAFRVHPDASTYKFLYKAYTKADMKEQV 437
>sp|Q9SQU6|PP216_ARATH Pentatricopeptide repeat-containing protein At3g06430,
chloroplastic OS=Arabidopsis thaliana GN=EMB2750 PE=2
SV=1
Length = 486
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 82/142 (57%), Gaps = 7/142 (4%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
+ +TL++L + + AL+VF+ +R++ +Y+P Y ++++LGK+ Q A++LF E+
Sbjct: 91 VTETLSDLIAKKQWLQALEVFDMLREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEM 150
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA-SGCTPHKLTFTILIRNLENAGE 213
+EGL+P +YT ++ Y + +ID A + MK+ C P T++ L++ +A +
Sbjct: 151 LEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQCQPDVFTYSTLLKACVDASQ 210
Query: 214 EELVAAVRRDCIQYVEFPERFL 235
+LV ++ Y E ER +
Sbjct: 211 FDLVDSL------YKEMDERLI 226
Score = 39.3 bits (90), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ + ++ + G +I M E + + + G++P+TR + +IG Y + M DK
Sbjct: 263 KPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSS 322
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
E M+ T+ +I + G+
Sbjct: 323 VMEYMRKLEFPWTTSTYNNIIEAFADVGD 351
Score = 38.5 bits (88), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 8/163 (4%)
Query: 58 VLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNF 117
VL ++ Q A KL LEEG + + L LL T R N +D A + +
Sbjct: 132 VLLGKSGQPNRAQKLF--DEMLEEGLEPTV--ELYTALLAAYT---RSNLIDDAFSILDK 184
Query: 118 VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177
++ +PD+ YS ++ Q + + L+ E+ + + P+T ++ Y +VG
Sbjct: 185 MKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVG 244
Query: 178 MIDKAMETYETMKAS-GCTPHKLTFTILIRNLENAGEEELVAA 219
D+ + M S C P T I++ N G+ +++ +
Sbjct: 245 RFDQMEKVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMES 287
>sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900
OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1
Length = 860
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 63/122 (51%)
Query: 91 LKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEEL 150
L+ D L++ N+ AL F +++++ +K D Y+ M+ LG+ KQ +L
Sbjct: 327 LRIDAYQANQVLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKL 386
Query: 151 FCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210
E+ ++G P+T Y +I Y + +++AM + M+ +GC P ++T+ LI
Sbjct: 387 LDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAK 446
Query: 211 AG 212
AG
Sbjct: 447 AG 448
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 24/161 (14%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R N L+ A+ VFN + +E KPD Y +I + K + +A +++ ++ GL PDT
Sbjct: 411 RANYLNEAMNVFNQM-QEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDT 469
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTI----------------LIRN 207
Y+ +I + G + A + + M GCTP+ +T+ I L R+
Sbjct: 470 FTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRD 529
Query: 208 LENAGEE------ELVAAVRRDCIQYVEFPERFLEEVYQKH 242
++NAG E +V V C Y+E E E+ QK+
Sbjct: 530 MQNAGFEPDKVTYSIVMEVLGHC-GYLEEAEAVFTEMQQKN 569
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 4/132 (3%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
LD+A+ ++ ++ PD YS +I LGK + A +LFCE+ +G P+ Y
Sbjct: 450 LDIAMDMYQRMQAG-GLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYN 508
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227
M+ ++ + A++ Y M+ +G P K+T++I++ L + G E AV + Q
Sbjct: 509 IMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQK 568
Query: 228 VEFPERFLEEVY 239
P+ E VY
Sbjct: 569 NWIPD---EPVY 577
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
ALK++ + + ++PD YS ++ +LG + AE +F E++++ PD VY ++
Sbjct: 523 ALKLYRDM-QNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLV 581
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
++ + G ++KA + Y+ M +G P+ T L+
Sbjct: 582 DLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLL 616
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+L Y+ M+ + K + A +L+ +++ G +PD Y+ ++ V G +++A
Sbjct: 502 PNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAV 561
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ M+ P + + +L+ AG E
Sbjct: 562 FTEMQQKNWIPDEPVYGLLVDLWGKAGNVE 591
>sp|Q9FNG8|PP366_ARATH Putative pentatricopeptide repeat-containing protein At5g06400,
mitochondrial OS=Arabidopsis thaliana GN=At5g06400 PE=3
SV=1
Length = 1030
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 62/107 (57%)
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
LA++ FN+V+++ + + +Y+ M+ + G+ + + M +EL E++K G D D R +T +
Sbjct: 171 LAMRFFNWVKQKDGFSHRVGIYNTMLSIAGEARNLDMVDELVSEMEKNGCDKDIRTWTIL 230
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
I VY + I K + +E M+ SG + I+IR+L AG +L
Sbjct: 231 ISVYGKAKKIGKGLLVFEKMRKSGFELDATAYNIMIRSLCIAGRGDL 277
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L ++ +L AL N + KE+ KP + +Y+ +I+ K KQ+ E +++ E +P
Sbjct: 864 LLQRGDLQKALDKVNSM-KEIGTKPGVHVYTSLIVYFFKEKQLEKVLETCQKMEGESCEP 922
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
YT MI Y+ +G +++A + M+ G +P T++ I L A + E
Sbjct: 923 SVVTYTAMICGYMSLGKVEEAWNAFRNMEERGTSPDFKTYSKFINCLCQACKSE 976
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D + ++ L + ++ A E+ +K+ LD D+ VY +I YL+ + KA+E +
Sbjct: 363 DAKYFEILVKGLCRANRMVDALEIVDIMKRRKLD-DSNVYGIIISGYLRQNDVSKALEQF 421
Query: 187 ETMKASGCTPHKLTFTILIRNL 208
E +K SG P T+T ++++L
Sbjct: 422 EVIKKSGRPPRVSTYTEIMQHL 443
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R N + AL++ + +++ D ++Y +I + ++ A E F +KK G P
Sbjct: 374 LCRANRMVDALEIVDIMKRRKL--DDSNVYGIIISGYLRQNDVSKALEQFEVIKKSGRPP 431
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
YTE++ ++ +K + M +G P + T ++
Sbjct: 432 RVSTYTEIMQHLFKLKQFEKGCNLFNEMIENGIEPDSVAITAVV 475
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILML--GKNKQIAMAEELFCELKKEGLDP 161
R ++A++ F + K++ P S + +I +L K + + A F E+ + G P
Sbjct: 725 RTGLTNIAIRTFKEM-KDMGLIPSSSTFKCLITVLCEKKGRNVEEATRTFREMIRSGFVP 783
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
D + + +G +VG A +++ G P + ++I IR L G+ E
Sbjct: 784 DRELVQDYLGCLCEVGNTKDAKSCLDSLGKIG-FPVTVAYSIYIRALCRIGKLE 836
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 6/174 (3%)
Query: 56 SRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVF 115
S + SE ++A+ K+ + + + R C+ + + L ++ + + +V+
Sbjct: 161 SPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVY 220
Query: 116 NFVRKEVWYKPDLSLYSDMILM---LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGV 172
+ E PD YS +I LG+N A LF E+K + P ++YT ++G+
Sbjct: 221 TEMCNEGDCFPDTITYSALISSYEKLGRNDS---AIRLFDEMKDNCMQPTEKIYTTLLGI 277
Query: 173 YLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
Y +VG ++KA++ +E MK +GC+P T+T LI+ L AG + +D ++
Sbjct: 278 YFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLR 331
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E + P + Y +I LGK K+ A ELF ELK+ + +RVY MI + + G +
Sbjct: 437 EKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLS 496
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+A++ + MK G P + L+ + AG
Sbjct: 497 EAVDLFNEMKNQGSGPDVYAYNALMSGMVKAG 528
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 6/133 (4%)
Query: 80 EEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
E+GF C L++ L + +R + K KE + +Y+ MI G
Sbjct: 437 EKGFPP--CPAAYCSLINALGKAKRYEAANELFKEL----KENFGNVSSRVYAVMIKHFG 490
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
K +++ A +LF E+K +G PD Y ++ ++ GMI++A M+ +GC
Sbjct: 491 KCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADIN 550
Query: 200 TFTILIRNLENAG 212
+ I++ G
Sbjct: 551 SHNIILNGFARTG 563
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+ + +L R D A+++F+ + K+ +P +Y+ ++ + K ++ A +LF E+
Sbjct: 239 LISSYEKLGRN---DSAIRLFDEM-KDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEM 294
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
K+ G P YTE+I + G +D+A Y+ M G TP + L+ L G
Sbjct: 295 KRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRV 354
Query: 215 ELVAAV 220
E + V
Sbjct: 355 EELTNV 360
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 43/83 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + Y+++I LGK ++ A + ++ ++GL PD ++ + +VG +++
Sbjct: 301 PTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNV 360
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ M CTP +++ +I+ L
Sbjct: 361 FSEMGMWRCTPTVVSYNTVIKAL 383
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/155 (20%), Positives = 66/155 (42%), Gaps = 14/155 (9%)
Query: 61 SEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRK 120
SEA+ + MK S + + + + ++KA +++ L R+ E
Sbjct: 496 SEAVDLFNEMKNQGSGPDVY-AYNALMSGMVKAGMINEANSLLRKME------------- 541
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E + D++ ++ ++ + A E+F +K G+ PD Y ++G + GM +
Sbjct: 542 ENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFE 601
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+A MK G +T++ ++ + N E+
Sbjct: 602 EAARMMREMKDKGFEYDAITYSSILDAVGNVDHEK 636
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 92 KADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELF 151
+ L++ L E R E A +FN + +E +KP L Y+ ++ L + K L
Sbjct: 322 RTKLMNGLIERGRPQE---AHSIFNTLIEE-GHKPSLITYTTLVTALTRQKHFHSLLSLI 377
Query: 152 CELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
+++K GL PDT ++ +I + G +D+AM+ +E MK SGC P TF LI+
Sbjct: 378 SKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKI 437
Query: 212 GEEE 215
G+ E
Sbjct: 438 GKLE 441
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
N++D +V + + +E KPD+ +S ++ + EE++ ++ + G+DPD
Sbjct: 580 NDMDGVGEVVDLM-EEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHA 638
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
++ + Y + G +KA + M+ G P+ + +T +I +AGE
Sbjct: 639 FSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGE 686
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ +S + + + AE++ +++K G+ P+ +YT++I + G + KAM+
Sbjct: 634 PDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQV 693
Query: 186 YETM-KASGCTPHKLTFTILIRNLENA 211
Y+ M G +P+ T+ LI A
Sbjct: 694 YKKMCGIVGLSPNLTTYETLIWGFGEA 720
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
+ +++ AL+ F + KE+ P+L +++ +I + E+ +++ G+ PD
Sbjct: 544 EGKMEEALRFF-YRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVV 602
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ ++ + VG + + E Y M G P F+IL + AGE E
Sbjct: 603 TFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPE 653
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 63/121 (52%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
ALKVF+ + KEV P+ YS +I L + ++ A L ++ ++G P TR YT +I
Sbjct: 249 ALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLI 308
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEF 230
G+IDKA ++ M GC P+ T+T+LI L G+ E V R ++ F
Sbjct: 309 KALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIF 368
Query: 231 P 231
P
Sbjct: 369 P 369
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%)
Query: 137 MLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP 196
ML K ++ + ++ K GL P YT ++ ++ G I + E MK SGC P
Sbjct: 555 MLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLP 614
Query: 197 HKLTFTILIRNLENAGEEE 215
+ +TI+I L G E
Sbjct: 615 NVYPYTIIINGLCQFGRVE 633
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+ +I L + ++ AE+L ++ G+ P+ YT M+ Y+ G +D+A+ET
Sbjct: 614 PNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALET 673
Query: 186 YETMKASG 193
M G
Sbjct: 674 VRAMVERG 681
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 113 KVFNFVRKEV--WYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
K FN + + KP++ Y+ +I L ++ +I A + ++ K+ + P Y +I
Sbjct: 319 KAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALI 378
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
Y + G + A E M+ C P+ TF L+ L G+
Sbjct: 379 NGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGK 421
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + Y+ +I K+ ++ A EL ++K P+ R + E++ +VG KA+
Sbjct: 369 PSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHL 428
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ M +G +P +++ +LI L G
Sbjct: 429 LKRMLDNGLSPDIVSYNVLIDGLCREG 455
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 43/95 (45%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ +++++ L + + A L + GL PD Y +I + G ++ A +
Sbjct: 403 KPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYK 462
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAA 219
+M P LTFT +I G+ ++ +A
Sbjct: 463 LLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASA 497
Score = 31.2 bits (69), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I L + + A +L + ++PD +T +I + + G D A
Sbjct: 439 PDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAF 498
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
M G + ++T T LI + G+
Sbjct: 499 LGLMLRKGISLDEVTGTTLIDGVCKVGK 526
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 83/171 (48%), Gaps = 11/171 (6%)
Query: 46 RDANKKPMWRSRVLSSEAIQAVHAM--------KLAKSSSKLEEGFQSRICRLLKADLLD 97
RD N W LS + Q + ++ +L S+L E F+ + ++LL
Sbjct: 82 RDPNLGKPWSYHGLSPQGQQVLRSLIEPNFDSGQLDSVLSELFEPFKDK-PESTSSELLA 140
Query: 98 TLTELRRQNELDLALKVFNFVRKEVWYKP--DLSLYSDMILMLGKNKQIAMAEELFCELK 155
L L + DLAL+ F++ K+ Y+ D S+ + +I MLGK +++ A +F L+
Sbjct: 141 FLKGLGFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQ 200
Query: 156 KEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
++G D YT +I + G +A+ ++ M+ GC P +T+ +++
Sbjct: 201 EDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILN 251
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%)
Query: 59 LSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFV 118
L EA Q MK A GF ++ LLD + R E A+KV N +
Sbjct: 294 LHQEAAQVFEEMKAA--------GFSYD--KVTYNALLDVYGKSHRPKE---AMKVLNEM 340
Query: 119 RKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM 178
+ P + Y+ +I ++ + A EL ++ ++G PD YT ++ + + G
Sbjct: 341 VLN-GFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGK 399
Query: 179 IDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
++ AM +E M+ +GC P+ TF I+ N G+
Sbjct: 400 VESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGK 434
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 1/124 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L+ R +++ A+ +F +R KP++ ++ I M G + ++F E+ G
Sbjct: 391 LSGFERAGKVESAMSIFEEMRN-AGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCG 449
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
L PD + ++ V+ Q GM + ++ MK +G P + TF LI G E
Sbjct: 450 LSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAM 509
Query: 219 AVRR 222
V R
Sbjct: 510 TVYR 513
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
K + D Y+ ++ + GK+ + A ++ E+ G P Y +I Y + GM+
Sbjct: 306 KAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGML 365
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
D+AME M G P T+T L+ E AG+ E ++
Sbjct: 366 DEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSI 406
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ +I +N ++ A +F E++ G+ PD Y IG Y M ++A+
Sbjct: 696 KPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIG 755
Query: 185 TYETMKASGCTPHKLTFTILI 205
M GC P++ T+ ++
Sbjct: 756 VVRYMIKHGCRPNQNTYNSIV 776
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ ++ ++ + G+N + +F E+K+ G P+ + +I Y + G ++AM
Sbjct: 452 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTV 511
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
Y M +G TP T+ ++ L G
Sbjct: 512 YRRMLDAGVTPDLSTYNTVLAALARGG 538
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P L ++L+ K + AE F ELK+ G PD M+ +Y + M+ KA
Sbjct: 591 EPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANG 650
Query: 185 TYETMKASGCTPHKLTFTILI----RNLENAGEEE-----LVAAVRRDCIQY 227
+ MK G TP T+ L+ R+ + EE L ++ D I Y
Sbjct: 651 VLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISY 702
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE + P ++ Y+ ++ M ++ +EE+ E+ +G+ PD Y +I Y + +
Sbjct: 656 KERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRM 715
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNL-ENAGEEELVAAVR 221
A + M+ SG P +T+ I + ++ EE + VR
Sbjct: 716 RDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVR 758
Score = 38.5 bits (88), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 125 KPDLSLYSDMILMLGK-----NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KP L Y+ ++ + GK NK ++ E++ K +G+ PD Y +I + +
Sbjct: 240 KPTLITYNVILNVFGKMGTPWNKITSLVEKM----KSDGIAPDAYTYNTLITCCKRGSLH 295
Query: 180 DKAMETYETMKASGCTPHKLTFTILI 205
+A + +E MKA+G + K+T+ L+
Sbjct: 296 QEAAQVFEEMKAAGFSYDKVTYNALL 321
>sp|Q9LVA2|PP443_ARATH Pentatricopeptide repeat-containing protein At5g62370
OS=Arabidopsis thaliana GN=At5g62370 PE=2 SV=1
Length = 982
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 96 LDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELK 155
L + EL ++N+ D A + + +E+ +P +++YS +I LGK ++ AEE F ++
Sbjct: 551 LIVVNELCKKNDRDAAFAIID-AMEELGLRPTVAIYSSIIGSLGKQGRVVEAEETFAKML 609
Query: 156 KEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ G+ PD Y MI Y + G ID+A E E + P T+T+LI G E
Sbjct: 610 ESGIQPDEIAYMIMINTYARNGRIDEANELVEEVVKHFLRPSSFTYTVLISGFVKMGMME 669
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/204 (20%), Positives = 87/204 (42%), Gaps = 6/204 (2%)
Query: 35 KIQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKAD 94
K+++L +DAN + + V ++ Q + L++ + G C L
Sbjct: 460 KVESLLGEIARKDANLAAVGLAVVTTALCSQRNYIAALSRIEKMVNLG-----CTPLPFS 514
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
+ L ++N ++ + N + +E+ + PD+ Y ++ L K A + +
Sbjct: 515 YNSVIKCLFQENIIEDLASLVNII-QELDFVPDVDTYLIVVNELCKKNDRDAAFAIIDAM 573
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
++ GL P +Y+ +IG + G + +A ET+ M SG P ++ + I+I G
Sbjct: 574 EELGLRPTVAIYSSIIGSLGKQGRVVEAEETFAKMLESGIQPDEIAYMIMINTYARNGRI 633
Query: 215 ELVAAVRRDCIQYVEFPERFLEEV 238
+ + + +++ P F V
Sbjct: 634 DEANELVEEVVKHFLRPSSFTYTV 657
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP +S+ S LG + A E+ ++KK + P+ ++ +I Y G +D+A
Sbjct: 761 KPLVSIPSS----LGNYGSKSFAMEVIGKVKKS-IIPNLYLHNTIITGYCAAGRLDEAYN 815
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEE 215
E+M+ G P+ +T+TIL+++ AG+ E
Sbjct: 816 HLESMQKEGIVPNLVTYTILMKSHIEAGDIE 846
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 66/131 (50%), Gaps = 6/131 (4%)
Query: 79 LEEGFQSRICRLLKAD-LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILM 137
+E G + + RL++ L+ + L A++V V+K + P+L L++ +I
Sbjct: 746 VEPGKEKLLQRLIRTKPLVSIPSSLGNYGSKSFAMEVIGKVKKSII--PNLYLHNTIITG 803
Query: 138 LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH 197
++ A ++KEG+ P+ YT ++ +++ G I+ A++ +E + C P
Sbjct: 804 YCAAGRLDEAYNHLESMQKEGIVPNLVTYTILMKSHIEAGDIESAIDLFE---GTNCEPD 860
Query: 198 KLTFTILIRNL 208
++ ++ L++ L
Sbjct: 861 QVMYSTLLKGL 871
Score = 35.4 bits (80), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 40/82 (48%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y D +Y+ ++ K+ + MA L+ + + + D ++ +I ++++GM+DK
Sbjct: 268 YYVDKVMYTCLMKEYCKDNNMTMAMRLYLRMVERSFELDPCIFNTLIHGFMKLGMLDKGR 327
Query: 184 ETYETMKASGCTPHKLTFTILI 205
+ M G + T+ I+I
Sbjct: 328 VMFSQMIKKGVQSNVFTYHIMI 349
Score = 34.7 bits (78), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 7/158 (4%)
Query: 59 LSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQ-----NELDLALK 113
LSSE + A + +S S I +L + LLD+ E+ R+ + + A
Sbjct: 22 LSSELFPSTSAAVFSAASGDHRSRCLSLIVKLGRRGLLDSAREVIRRVIDGSSSISEAAL 81
Query: 114 VFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE-LKKEGLDPDTRVYTEMIGV 172
V +F + D S Y +I L + Q +AE + + + G+ PD+ V M+
Sbjct: 82 VADFAVDN-GIELDSSCYGALIRKLTEMGQPGVAETFYNQRVIGNGIVPDSSVLDSMVFC 140
Query: 173 YLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210
+++ D+A + + ASG P + + ++++ L N
Sbjct: 141 LVKLRRFDEARAHLDRIIASGYAPSRNSSSLVVDELCN 178
Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 131 YSDMILMLGKNKQIAMAEELFCE-LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM 189
Y MI K + A LF E + + YT +I + + G +DKA++ M
Sbjct: 345 YHIMIGSYCKEGNVDYALRLFVNNTGSEDISRNVHCYTNLIFGFYKKGGMDKAVDLLMRM 404
Query: 190 KASGCTPHKLTFTILIRNLENAGE 213
+G P +T+ +L++ L E
Sbjct: 405 LDNGIVPDHITYFVLLKMLPKCHE 428
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 58/111 (52%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L++ + AL F +++++ +K D Y+ M+ LG+ KQ +L E+ ++G P
Sbjct: 333 LKQMDNYANALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKP 392
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+T Y +I Y + + +AM + M+ +GC P ++T+ LI AG
Sbjct: 393 NTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAG 443
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP+ Y+ +I G+ + A +F ++++ G +PD Y +I ++ + G +D AM+
Sbjct: 391 KPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMD 450
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDC 224
Y+ M+ +G +P T++++I L AG L AA R C
Sbjct: 451 MYQRMQEAGLSPDTFTYSVIINCLGKAG--HLPAAHRLFC 488
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
LD+A+ ++ + +E PD YS +I LGK + A LFCE+ +G P+ +
Sbjct: 445 LDIAMDMYQRM-QEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFN 503
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
MI ++ + + A++ Y M+ +G P K+T++I++ L + G
Sbjct: 504 IMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCG 548
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 7/114 (6%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R N L A+ VFN + +E +PD Y +I + K + +A +++ +++ GL PDT
Sbjct: 406 RANYLKEAMNVFNQM-QEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDT 464
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI------RNLENA 211
Y+ +I + G + A + M GCTP+ +TF I+I RN E A
Sbjct: 465 FTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETA 518
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
+ ALK++ + + ++PD YS ++ +LG + AE +F E++++ PD VY
Sbjct: 516 ETALKLYRDM-QNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGL 574
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
++ ++ + G +DKA + Y+ M +G P+ T L+
Sbjct: 575 LVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLL 611
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 41/88 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+L ++ MI + K + A +L+ +++ G PD Y+ ++ V G +++A
Sbjct: 497 PNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGV 556
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+ M+ P + + +L+ AG
Sbjct: 557 FAEMQRKNWVPDEPVYGLLVDLWGKAGN 584
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ R E+D A+ +F + + KPD+ Y+ +I LGKN + A F E++++G
Sbjct: 484 IASFGRVGEVDEAINIFEELERSDC-KPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKG 542
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
L+PD Y+ ++ + + ++ A +E M GC P+ +T+ IL+ LE G
Sbjct: 543 LNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNG 596
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 50/87 (57%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D +Y+ + LGK KQI+ +LF ++KK+G PD Y +I + +VG +D+A+ +
Sbjct: 441 DTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIF 500
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGE 213
E ++ S C P +++ LI L G+
Sbjct: 501 EELERSDCKPDIISYNSLINCLGKNGD 527
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
PD+ YS ++ GK +++ MA LF E+ +G P+ Y ++ + G +A++
Sbjct: 544 NPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVD 603
Query: 185 TYETMKASGCTPHKLTFTILIR 206
Y MK G TP +T+T+L R
Sbjct: 604 LYSKMKQQGLTPDSITYTVLER 625
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 7/107 (6%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ MI +G+ + A LF E+ EGL + Y ++ V + M+DKA++ + M
Sbjct: 273 YTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMV 332
Query: 191 ASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEE 237
+GC P++ T+++L+ L G+ VR D + VE +R++ +
Sbjct: 333 ETGCRPNEYTYSLLLNLLVAEGQ-----LVRLDGV--VEISKRYMTQ 372
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 41/80 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I G+ ++ A +F EL++ PD Y +I + G +D+A
Sbjct: 475 PDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVR 534
Query: 186 YETMKASGCTPHKLTFTILI 205
++ M+ G P +T++ L+
Sbjct: 535 FKEMQEKGLNPDVVTYSTLM 554
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 137 MLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP 196
+ G K I A E+ ++ ++G+ DT +Y + ++ I + +E MK G +P
Sbjct: 417 LCGAGKTIE-AIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSP 475
Query: 197 HKLTFTILIRNLENAGEEELVAAV-----RRDC 224
T+ ILI + GE + + R DC
Sbjct: 476 DIFTYNILIASFGRVGEVDEAINIFEELERSDC 508
Score = 35.0 bits (79), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
+++ + A +++CE+++ G D Y ++ + +KA + +E MK C +
Sbjct: 215 RSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLDA---LAKDEKACQVFEDMKKRHCRRDEY 271
Query: 200 TFTILIRNLENAGE 213
T+TI+IR + G+
Sbjct: 272 TYTIMIRTMGRIGK 285
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 69/126 (54%), Gaps = 5/126 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
++ L+ RR +E A F+ ++ ++PD+ +Y++++ + +I+ AE++F E+
Sbjct: 227 VISNLSRKRRASE---AQSFFDSLKDR--FEPDVIVYTNLVRGWCRAGEISEAEKVFKEM 281
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
K G++P+ Y+ +I + G I +A + + M SGC P+ +TF L+R AG
Sbjct: 282 KLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRT 341
Query: 215 ELVAAV 220
E V V
Sbjct: 342 EKVLQV 347
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y++MI + GK +Q +A L +K ++ +T +I Y++ G+ +A+ + M+
Sbjct: 154 YNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRME 213
Query: 191 ASGCTPHKLTFTILIRNL 208
GC P K+ F+I+I NL
Sbjct: 214 DYGCVPDKIAFSIVISNL 231
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 42/84 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+ +++++ + K + +++ ++KK G +PDT Y +I + + ++ A++
Sbjct: 323 PNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKV 382
Query: 186 YETMKASGCTPHKLTFTILIRNLE 209
TM C + TF + R +E
Sbjct: 383 LNTMIKKKCEVNASTFNTIFRYIE 406
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 11/147 (7%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
LT LR+ ++D ALKVF ++K+ P+LS Y+ +I ML + ++ A EL ++K G
Sbjct: 350 LTCLRKMGKVDEALKVFEEMKKDA--APNLSTYNILIDMLCRAGKLDTAFELRDSMQKAG 407
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG------ 212
L P+ R M+ + +D+A +E M CTP ++TF LI L G
Sbjct: 408 LFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAY 467
Query: 213 ---EEELVAAVRRDCIQYVEFPERFLE 236
E+ L + R + I Y + F
Sbjct: 468 KVYEKMLDSDCRTNSIVYTSLIKNFFN 494
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+ LY+ I GK ++ MA + F E++ GL PD YT MIGV + +D+A+E +
Sbjct: 237 DIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMF 296
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGE 213
E ++ + P + +I +AG+
Sbjct: 297 EHLEKNRRVPCTYAYNTMIMGYGSAGK 323
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
N D+ L +F + +E+ Y+P + L++ +I K ++ A L E+K LD D +
Sbjct: 182 NHSDMMLTLFQQM-QELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVL 240
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y I + +VG +D A + + ++A+G P ++T+T +I
Sbjct: 241 YNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMI 280
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 74/142 (52%), Gaps = 10/142 (7%)
Query: 71 KLAKSSSKLEE----GFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKP 126
K+ K+ LEE GF+ + + ++D L ++ R +E + + R E+
Sbjct: 602 KVNKAYQLLEEMKTKGFEPTV--VTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIEL---- 655
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
++ +YS +I GK +I A + EL ++GL P+ + ++ ++ I++A+ +
Sbjct: 656 NVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCF 715
Query: 187 ETMKASGCTPHKLTFTILIRNL 208
++MK CTP+++T+ ILI L
Sbjct: 716 QSMKELKCTPNQVTYGILINGL 737
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LLD L + NE AL F + KE+ P+ Y +I L K ++ A + E+
Sbjct: 698 LLDALVKAEEINE---ALVCFQSM-KELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEM 753
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211
+K+G+ P T YT MI + G I +A ++ KA+G P + +I L N
Sbjct: 754 QKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNG 810
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
++D+A K F+ + KPD Y+ MI +L K ++ A E+F L+K P T Y
Sbjct: 253 KVDMAWKFFHEIEAN-GLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAY 311
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
MI Y G D+A E +A G P + + ++ L G+
Sbjct: 312 NTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGK 358
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PD YS +I L K ELF +K++G DTR Y +I + + G ++KA
Sbjct: 548 FVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAY 607
Query: 184 ETYETMKASGCTPHKLTFTILIRNL 208
+ E MK G P +T+ +I L
Sbjct: 608 QLLEEMKTKGFEPTVVTYGSVIDGL 632
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 11/110 (10%)
Query: 115 FNFVRKEVWYK-----------PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
FN RKE +K PDL L + + + K + +F E+K PD
Sbjct: 493 FNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDA 552
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
R Y+ +I ++ G ++ E + +MK GC + I+I G+
Sbjct: 553 RSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGK 602
Score = 38.9 bits (89), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++P + Y +I L K ++ A LF E K + ++ + +Y+ +I + +VG ID+A
Sbjct: 618 FEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAY 677
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGE 213
E + G TP+ T+ L+ L A E
Sbjct: 678 LILEELMQKGLTPNLYTWNSLLDALVKAEE 707
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 38/89 (42%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ P ++ +M+L K ++ ++ ++K P YT +IG + V D +
Sbjct: 129 FGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMML 188
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAG 212
++ M+ G P FT LIR G
Sbjct: 189 TLFQQMQELGYEPTVHLFTTLIRGFAKEG 217
Score = 31.2 bits (69), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 15/121 (12%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYK---PDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L + +LD A +F +E+ YK PD + +I LGK ++ A +++ ++
Sbjct: 422 LCKSQKLDEACAMF----EEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKM---- 473
Query: 159 LDPDTR----VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
LD D R VYT +I + G + + Y+ M C+P + + AGE
Sbjct: 474 LDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEP 533
Query: 215 E 215
E
Sbjct: 534 E 534
>sp|Q3E9F0|PP392_ARATH Pentatricopeptide repeat-containing protein At5g18475
OS=Arabidopsis thaliana GN=At5g18475 PE=2 SV=1
Length = 506
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R E++ A K+ +F++K P++ YS ++ K +I A++ F E+KK GL DT
Sbjct: 280 RAGEVERAKKILDFMKKN-GCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDT 338
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
YT ++ + + G D+AM+ MKAS C LT+ +++R L + G E
Sbjct: 339 VGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGRSE 390
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 88 CRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMA 147
CR ++ L+ + R + D +++FN ++ KP L+ S + +L + ++ ++
Sbjct: 120 CRFQESLFLNLMRHFSRSDLHDKVMEMFNLIQVIARVKPSLNAISTCLNLLIDSGEVNLS 179
Query: 148 EELFCELKKE-GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCT-PHKLTFTILI 205
+L K GL P+T ++ ++ + + G I+ A E MK SG + P+ +T++ L+
Sbjct: 180 RKLLLYAKHNLGLQPNTCIFNILVKHHCKNGDINFAFLVVEEMKRSGISYPNSITYSTLM 239
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
+ L+D L R E A+++F + + PD ++ MI + ++ A+++
Sbjct: 236 STLMDCLFAHSRSKE---AVELFEDMISKEGISPDPVTFNVMINGFCRAGEVERAKKILD 292
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+KK G +P+ Y+ ++ + +VG I +A +T++ +K +G + +T L+ G
Sbjct: 293 FMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDTVGYTTLMNCFCRNG 352
Query: 213 EEE 215
E +
Sbjct: 353 ETD 355
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 113 KVFNFVRKEVW--YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
K F+ +R+ + + PD S YS ++ L ++ +A LF E+K+ GL D YT M+
Sbjct: 466 KAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMV 525
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
+ + G+I++A + + M+ GCTP+ +T+T LI
Sbjct: 526 DSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIH 561
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
L L ++++LA +F +++ D+ Y+ M+ K I A + F E+++
Sbjct: 489 VLNYLCNASKMELAFLLFEEMKRG-GLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREV 547
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
G P+ YT +I YL+ + A E +ETM + GC P+ +T++ LI AG+ E
Sbjct: 548 GCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVE 605
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 20/167 (11%)
Query: 80 EEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139
E GF + + + L+D +++RQ DLA KV + + + P++ +Y++MI L
Sbjct: 702 EHGFPATL--YTYSSLIDRYFKVKRQ---DLASKVLSKMLENSC-APNVVIYTEMIDGLC 755
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
K + A +L ++++G P+ YT MI + +G I+ +E E M + G P+ +
Sbjct: 756 KVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYV 815
Query: 200 TFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVYQKHRKTQ 246
T+ +LI + G ++ LEE+ Q H T
Sbjct: 816 TYRVLIDHCCKNGA--------------LDVAHNLLEEMKQTHWPTH 848
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
A K FN +R EV P++ Y+ +I K K+++ A ELF + EG P+ Y+ +I
Sbjct: 537 ARKWFNEMR-EVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALI 595
Query: 171 GVYLQVGMIDKAMETYETMKASGCTP 196
+ + G ++KA + +E M S P
Sbjct: 596 DGHCKAGQVEKACQIFERMCGSKDVP 621
Score = 38.9 bits (89), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 18/117 (15%)
Query: 90 LLKADLLDTLTELRRQNELDLA-LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAE 148
LKAD LD+ + + R E+ LA L++ F + Y + +GK +
Sbjct: 245 FLKADRLDSASLIHR--EMSLANLRMDGFTLRCFAYS---------LCKVGKWR------ 287
Query: 149 ELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
E ++ E PDT YT++I + + ++AM+ M+A+ C P+ +T++ L+
Sbjct: 288 EALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLL 344
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 44/96 (45%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y ++ K+ ++ A +L + EG +P+ VY +I +VG +D+A E
Sbjct: 636 RPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQE 695
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
M G T++ LI ++L + V
Sbjct: 696 VKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKV 731
Score = 35.4 bits (80), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 108 LDLALKVFN--FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165
LDLA K ++ V K ++S ++ + GK ++ A + E+ +G PDT
Sbjct: 429 LDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEK---AFSVIREMIGQGFIPDTST 485
Query: 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
Y++++ ++ A +E MK G T+TI++ + AG
Sbjct: 486 YSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAG 532
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 7/126 (5%)
Query: 113 KVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGV 172
+V N + E Y P +++ ++ + + A +L ++ K G P VY +IG
Sbjct: 358 RVLNMMMMEGCY-PSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGS 416
Query: 173 Y------LQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
L ++D A + Y M A+G +K+ + R L +AG+ E +V R+ I
Sbjct: 417 ICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIG 476
Query: 227 YVEFPE 232
P+
Sbjct: 477 QGFIPD 482
>sp|Q9ZUU3|PP190_ARATH Pentatricopeptide repeat-containing protein At2g37230
OS=Arabidopsis thaliana GN=At2g37230 PE=2 SV=1
Length = 757
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
L+ AL+ F + K PD + ++ MI + K++ AE+LF E+K + P YT
Sbjct: 271 LETALRFFEDM-KTRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSYT 329
Query: 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
MI YL V +D + +E M++SG P+ T++ L+ L +AG+
Sbjct: 330 TMIKGYLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGK 375
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ MI L K+K++ A +LF L+++G++P+ +YT +I Y + G +D+A
Sbjct: 495 PDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLM 554
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
E M + C P+ LTF LI L G+
Sbjct: 555 LEKMLSKNCLPNSLTFNALIHGLCADGK 582
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD Y+ I + ++ AE++ ++++ G+ PD Y+ +I Y +G + A +
Sbjct: 634 KPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFD 693
Query: 185 TYETMKASGCTPHKLTFTILIRNL-------ENAGEEELVA 218
+ M+ +GC P + TF LI++L + E EL A
Sbjct: 694 VLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCA 734
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 113 KVFNFVRK--EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
+ N V++ E KP++ Y+ +I L + A EL ++ ++GL P+ Y +I
Sbjct: 341 EALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALI 400
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
Y + GMI+ A++ E M++ +P+ T+ LI+
Sbjct: 401 NGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIK 436
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+ M+ K + A + ++ + GLDPD YT +I Y Q +D A +
Sbjct: 216 PNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKV 275
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ M GC +++ +T LI L
Sbjct: 276 FNEMPLKGCRRNEVAYTHLIHGL 298
Score = 44.3 bits (103), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E PD Y+ +I+ + K + A ++F E+ +G + YT +I ID
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRID 305
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNL 208
+AM+ + MK C P T+T+LI++L
Sbjct: 306 EAMDLFVKMKDDECFPTVRTYTVLIKSL 333
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I ++ A L + GL PD YT MI + +++A +
Sbjct: 460 PDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDL 519
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+++++ G P+ + +T LI AG+
Sbjct: 520 FDSLEQKGVNPNVVMYTALIDGYCKAGK 547
Score = 38.9 bits (89), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 44/100 (44%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
++ +P +S + +I L K+ A F ++ G PD YT I Y + G +
Sbjct: 595 KIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLL 654
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
A + M+ +G +P T++ LI+ + G+ V
Sbjct: 655 DAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDV 694
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 139 GKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK 198
GK K+ + EE ++ K GL P T +I L+ G D A ++ M +SG P
Sbjct: 581 GKLKEATLLEE---KMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDA 637
Query: 199 LTFTILIRNLENAGE----EELVAAVRRDCIQ 226
T+T I+ G E+++A +R + +
Sbjct: 638 HTYTTFIQTYCREGRLLDAEDMMAKMRENGVS 669
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKK-EGLDPDTRVYTEMIGVYLQVGMIDKAME 184
P+ Y +IL + + + +AE++F +++ EG+ P V+ ++ ++ ++A +
Sbjct: 758 PNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAK 817
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
+ M G P + +LI L GE+E +V ++ +Q
Sbjct: 818 VVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQ 859
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+ L RR +D A+ +F ++ + + P + Y+ +I L +++ + A L E+
Sbjct: 294 LIHGLCVARR---IDEAMDLFVKMKDDECF-PTVRTYTVLIKSLCGSERKSEALNLVKEM 349
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
++ G+ P+ YT +I +KA E M G P+ +T+ LI
Sbjct: 350 EETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALIN 401
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LLD L + EL+ AL++F ++K + +Y+ +I + ++ A LFC L
Sbjct: 461 LLDGLCD---NGELNKALEIFEKMQKS-RMTLGIGIYNIIIHGMCNASKVDDAWSLFCSL 516
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
+G+ PD Y MIG + G + +A + MK GCTP T+ ILIR + G
Sbjct: 517 SDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIR--AHLGGS 574
Query: 215 ELVAAV 220
L+++V
Sbjct: 575 GLISSV 580
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ YS +I K K++ LF E+ +GL P+T Y ++ + Q G ++ A E
Sbjct: 382 EPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKE 441
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGE 213
++ M + G P +T+ IL+ L + GE
Sbjct: 442 LFQEMVSRGVPPSVVTYGILLDGLCDNGE 470
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ +S +I + K ++ A+EL+ E+ G+ PDT Y +I + + + +A +
Sbjct: 313 PDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQM 372
Query: 186 YETMKASGCTPHKLTFTILIRN 207
++ M + GC P +T++ILI +
Sbjct: 373 FDLMVSKGCEPDIVTYSILINS 394
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 41/88 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD Y+ +I K + A ++F + +G +PD Y+ +I Y + +D M
Sbjct: 348 PDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRL 407
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+ + + G P+ +T+ L+ +G+
Sbjct: 408 FREISSKGLIPNTITYNTLVLGFCQSGK 435
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ MI L K ++ A+ LF ++K++G PD Y +I +L + ++E
Sbjct: 522 KPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVE 581
Query: 185 TYETMKASGCTPHKLTFTILIRNLEN 210
E MK G + T ++I L +
Sbjct: 582 LIEEMKVCGFSADSSTIKMVIDMLSD 607
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+ Y+ ++L ++ ++ A+ELF E+ G+ P Y ++ G ++KA+E
Sbjct: 418 PNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEI 477
Query: 186 YETMKASGCTPHKLTFTILIRNLENA 211
+E M+ S T + I+I + NA
Sbjct: 478 FEKMQKSRMTLGIGIYNIIIHGMCNA 503
Score = 37.4 bits (85), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 53/112 (47%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
E ++PD Y ++ L K+ A+A +LF ++++ + Y+ +I + G D
Sbjct: 203 EYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFD 262
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
A+ + M+ G +T++ LI L N G+ + A + R+ I P+
Sbjct: 263 DALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPD 314
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2
SV=2
Length = 1440
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 64/135 (47%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+Q +LDLAL+++ ++ PD Y+ +I LGK + A L E+ G+ P
Sbjct: 414 KQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTL 473
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
+ Y+ +I Y + G ++A +T+ M SG P L +++++ L E + RD
Sbjct: 474 QTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRD 533
Query: 224 CIQYVEFPERFLEEV 238
I P L E+
Sbjct: 534 MISDGHTPSYTLYEL 548
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL+VF ++ W+ P+ + + ++ +LG+ Q ++A E+F + D +VY M+
Sbjct: 174 ALEVFEWLNLRHWHSPNARMVAAILGVLGRWNQESLAVEIFTRAEPTVGD-RVQVYNAMM 232
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
GVY + G KA E + M+ GC P ++F LI
Sbjct: 233 GVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLI 267
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 1/125 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L+ R + LD A+KVF + +PDL Y+ MI + G+ A AE LF EL+ +G
Sbjct: 304 LSACSRDSNLDGAVKVFEDMEAHR-CQPDLWTYNAMISVYGRCGLAAEAERLFMELELKG 362
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
PD Y ++ + + +K E Y+ M+ G ++T+ +I G+ +L
Sbjct: 363 FFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLAL 422
Query: 219 AVRRD 223
+ +D
Sbjct: 423 QLYKD 427
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM 189
+Y+D+I GK K AE + L++ G PD + + ++ Y Q G ++A + TM
Sbjct: 754 MYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTM 813
Query: 190 KASGCTPHKLTFTILIRNLENAGE-EELVAAV 220
G +P + IL+ L G EEL V
Sbjct: 814 MRDGPSPTVESINILLHALCVDGRLEELYVVV 845
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P L Y +I GK K + AE+LF EL +GL D Y M+ + G KA +
Sbjct: 995 PKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKL 1054
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRRDCIQYVEFPERFLEEVYQK 241
+ MK +G P T +L+ + ++G E++++ ++ ++ P + + Y +
Sbjct: 1055 LQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLR 1114
Query: 242 HR 243
+
Sbjct: 1115 SK 1116
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
+V KP L YS +I K + AE+ F + + G PD Y+ M+ V L+
Sbjct: 466 DVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETR 525
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
KA Y M + G TP + ++I L + + RD
Sbjct: 526 KAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRD 568
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L R N+ LA+++F R E + +Y+ M+ + ++ + + A+EL +++ G
Sbjct: 198 LGVLGRWNQESLAVEIF--TRAEPTVGDRVQVYNAMMGVYSRSGKFSKAQELVDAMRQRG 255
Query: 159 LDPDTRVYTEMIGVYLQVGMI--DKAMETYETMKASGCTPHKLTFTILI 205
PD + +I L+ G + + A+E + ++ SG P +T+ L+
Sbjct: 256 CVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLL 304
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168
+LA+++ + VR +PD Y+ ++ ++ + A ++F +++ PD Y
Sbjct: 279 NLAVELLDMVRNSG-LRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNA 337
Query: 169 MIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI------RNLENAGE 213
MI VY + G+ +A + ++ G P +T+ L+ RN E E
Sbjct: 338 MISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKE 388
Score = 31.2 bits (69), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYT 167
YS +I ++K E E+KKEGL+PD R++T
Sbjct: 1105 YSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWT 1141
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 105 QNELDLALKVFNF-VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ LD A ++F F V K+ + PDL Y+ +I K+K++ ELF E+ GL DT
Sbjct: 303 HDRLDKAKQMFEFMVSKDCF--PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDT 360
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
YT +I G D A + ++ M + G P +T++IL+ L N G+ E
Sbjct: 361 VTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE 412
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L +L+ AL+VF++++K K D+ +Y+ MI + K ++ +LFC L +G
Sbjct: 402 LDGLCNNGKLEKALEVFDYMQKS-EIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKG 460
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI----RNLENAGEE 214
+ P+ Y MI ++ +A + MK G P T+ LI R+ + A
Sbjct: 461 VKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASA 520
Query: 215 ELVAAVR 221
EL+ +R
Sbjct: 521 ELIREMR 527
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
P+L ++ +I K + AE+L ++ K +DPD Y +I + +DKA +
Sbjct: 252 NPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQ 311
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
+E M + C P T+ LI+
Sbjct: 312 MFEFMVSKDCFPDLDTYNTLIKGF 335
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + D A KVF + + PD+ YS ++ L N ++ A E+F ++K +
Sbjct: 370 LFHDGDCDNAQKVFKQMVSD-GVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL 428
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
D +YT MI + G +D + + ++ G P+ +T+ +I L
Sbjct: 429 DIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGL 475
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R++++ LAL + + K + Y+P + S ++ K+I+ A L ++ + G PDT
Sbjct: 57 RRSQISLALALLGKMMK-LGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDT 115
Query: 164 RVYTEMI-GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
+T +I G++L +A+ + M GC P+ +T+ +++ L G+ +L
Sbjct: 116 ITFTTLIHGLFLH-NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDL 168
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 41/88 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I + ++ A+++F + + PD Y +I + + ++ E
Sbjct: 288 PDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTEL 347
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+ M G +T+T LI+ L + G+
Sbjct: 348 FREMSHRGLVGDTVTYTTLIQGLFHDGD 375
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL+ YS ++ GK +++ +L E+ G PD Y ++ Y + G I +AM
Sbjct: 280 PDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGV 339
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ M+A+GCTP+ T+++L+ +G
Sbjct: 340 FHQMQAAGCTPNANTYSVLLNLFGQSG 366
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 67/138 (48%), Gaps = 5/138 (3%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
D E + + +L++F ++++++W KP+ +Y+ MI +LG+ + E+F E
Sbjct: 107 DFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDE 166
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+ +G+ YT +I Y + G + ++E + MK +P LT+ +I G
Sbjct: 167 MPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGL 226
Query: 214 E-----ELVAAVRRDCIQ 226
+ L A +R + IQ
Sbjct: 227 DWEGLLGLFAEMRHEGIQ 244
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 48/101 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD++ Y+ ++ K+ I A +F +++ G P+ Y+ ++ ++ Q G D +
Sbjct: 315 PDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQL 374
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
+ MK+S P T+ ILI G + V + D ++
Sbjct: 375 FLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVE 415
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ Y +I GK A ++ + + P ++ YT +I + Q + ++A+
Sbjct: 419 EPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALV 478
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ TM G P TF L+ + G
Sbjct: 479 AFNTMHEVGSNPSIETFHSLLYSFARGG 506
Score = 38.5 bits (88), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
LF E++ EG+ PD Y ++ G+ D+A + TM G P T++ L+
Sbjct: 234 LFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLV 289
Score = 38.5 bits (88), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 37/80 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+ + YS ++ + G++ + +LF E+K DPD Y +I V+ + G + +
Sbjct: 350 PNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTL 409
Query: 186 YETMKASGCTPHKLTFTILI 205
+ M P T+ +I
Sbjct: 410 FHDMVEENIEPDMETYEGII 429
Score = 38.1 bits (87), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD + Y+ +I + G+ LF ++ +E ++PD Y +I + G+ + A +
Sbjct: 385 PDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKI 444
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG--EEELVA 218
+ M A+ P +T +I A EE LVA
Sbjct: 445 LQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVA 479
Score = 37.7 bits (86), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL FN + EV P + + ++ + + +E + L G+ + + I
Sbjct: 476 ALVAFNTMH-EVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQI 534
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
Y Q G ++A++TY M+ S C P + T ++
Sbjct: 535 EAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVL 569
Score = 35.0 bits (79), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 32/59 (54%)
Query: 147 AEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
A + + +++K DPD R ++ VY ++D+ E +E MKAS P + + +++
Sbjct: 546 AVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMML 604
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 77/150 (51%), Gaps = 4/150 (2%)
Query: 77 SKLEEGFQSRICRLLKADLLD---TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSD 133
S+ EE ++ I R L D++ + L + LD A ++F F+ + + PD+ YS
Sbjct: 273 SEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCF-PDVVTYSI 331
Query: 134 MILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG 193
+I K+K++ +LFCE+ + G+ +T YT +I Y + G ++ A E + M G
Sbjct: 332 LINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCG 391
Query: 194 CTPHKLTFTILIRNLENAGEEELVAAVRRD 223
P+ +T+ +L+ L + G+ E + D
Sbjct: 392 VHPNIITYNVLLHGLCDNGKIEKALVILAD 421
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 119 RKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM 178
++E++ PD+ ++ +I K +++ AEE + E+ + LDPD Y+ +I
Sbjct: 249 KREIY--PDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSR 306
Query: 179 IDKAMETYETMKASGCTPHKLTFTILIRN 207
+D+A E + M + GC P +T++ILI
Sbjct: 307 LDEAEEMFGFMVSKGCFPDVVTYSILING 335
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
YKP++ +Y+ +I L K+KQ+ A +L ++K+G+ PD Y +I G A
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDAT 241
Query: 184 ETYETMKASGCTPHKLTFTILI 205
M P TF LI
Sbjct: 242 RMVSCMTKREIYPDVFTFNALI 263
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 104 RQNELDLALKVFNFVRKEVW--YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
R +L++A ++F R+ V+ P++ Y+ ++ L N +I A + +++K G+D
Sbjct: 373 RAGKLNVAEEIF---RRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDA 429
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
D Y +I + G + A + Y ++ G P T+T ++ L G
Sbjct: 430 DIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKG 480
Score = 38.1 bits (87), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE-MIGVYLQVGMIDKAMET 185
D+ Y+ +I + K ++A A +++C L +GL PD YT M+G+Y + G+ +A
Sbjct: 430 DIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLY-KKGLRREADAL 488
Query: 186 YETMKASGCTPHK 198
+ MK G P++
Sbjct: 489 FRKMKEDGILPNE 501
>sp|Q9FJW6|PP451_ARATH Pentatricopeptide repeat-containing protein At5g67570,
chloroplastic OS=Arabidopsis thaliana GN=DG1 PE=1 SV=2
Length = 798
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 113 KVFNFVRKEVW---YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
K+ +R++ W +PDL +Y+ ++ Q +F EL+K GL P+ Y
Sbjct: 323 KLTKNLRQKNWDPVLEPDLVVYNAILNACVPTLQWKAVSWVFVELRKNGLRPNGATYGLA 382
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE-EELVAAVR 221
+ V L+ G D+ + + MK+SG P +T+ +L+R L G+ EE V AVR
Sbjct: 383 MEVMLESGKFDRVHDFFRKMKSSGEAPKAITYKVLVRALWREGKIEEAVEAVR 435
Score = 31.6 bits (70), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 7/120 (5%)
Query: 79 LEEGFQSRI--CRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMIL 136
LE G R+ CR L+ + +D + +F +++ + P++ + M+
Sbjct: 467 LEVGRMKRLENCRPLEITFTGLIAASLNGGHVDDCMAIFQYMKDKC--DPNIGTANMMLK 524
Query: 137 MLGKNKQIAMAEELFCEL---KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG 193
+ G+N + A+ELF E+ K+ L P+ Y+ M+ + + Y+TM SG
Sbjct: 525 VYGRNDMFSEAKELFEEIVSRKETHLVPNEYTYSFMLEASARSLQWEYFEHVYQTMVLSG 584
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 8/131 (6%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
LLD L + +L+ AL VF +++K +PD+ Y+ MI + K ++ +LFC L
Sbjct: 471 LLDGLC---KYGKLEKALVVFEYLQKSKM-EPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 526
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI----RNLEN 210
+G+ P+ +YT MI + + G+ ++A + MK G P+ T+ LI R+ +
Sbjct: 527 SLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDK 586
Query: 211 AGEEELVAAVR 221
A EL+ +R
Sbjct: 587 AASAELIKEMR 597
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
P++ +S +I K ++ AE+L+ E+ K +DPD Y+ +I + +D+A
Sbjct: 322 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH 381
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
+E M + C P+ +T+ LI+
Sbjct: 382 MFELMISKDCFPNVVTYNTLIKGF 405
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P++ Y+ +I K K++ ELF E+ + GL +T Y +I Q G D A +
Sbjct: 393 PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKI 452
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
++ M + G P +T++IL+ L G+ E
Sbjct: 453 FKKMVSDGVPPDIITYSILLDGLCKYGKLE 482
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PDL Y ++ L K I +A L +++K ++ D +YT +I ++ A+
Sbjct: 217 QPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALN 276
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ M G P+ +T+ LIR L N G
Sbjct: 277 LFTEMDNKGIRPNVVTYNSLIRCLCNYG 304
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 46/85 (54%)
Query: 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190
Y+ +I L + MA+++F ++ +G+ PD Y+ ++ + G ++KA+ +E ++
Sbjct: 433 YNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQ 492
Query: 191 ASGCTPHKLTFTILIRNLENAGEEE 215
S P T+ I+I + AG+ E
Sbjct: 493 KSKMEPDIYTYNIMIEGMCKAGKVE 517
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + + D+A K+F + + PD+ YS ++ L K ++ A +F L+K ++P
Sbjct: 440 LFQAGDCDMAQKIFKKMVSD-GVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEP 498
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
D Y MI + G ++ + + ++ G P+ + +T +I G +E A+
Sbjct: 499 DIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALF 558
Query: 222 RD 223
R+
Sbjct: 559 RE 560
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+++L LAL V + K + Y+PD+ S ++ K+I+ A L ++ P+T
Sbjct: 127 RRSQLPLALAVLGKMMK-LGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNT 185
Query: 164 RVYTEMI-GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220
+ +I G++L +A+ + M A GC P T+ ++ L G+ +L ++
Sbjct: 186 VTFNTLIHGLFLH-NKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSL 242
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 3/111 (2%)
Query: 99 LTELRRQNELDLALKVFNFVRK-EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
L+ + + N+ DL + + ++ + Y DL Y+ +I + Q+ +A + ++ K
Sbjct: 87 LSAIAKMNKFDLVISLGERMQNLRISY--DLYSYNILINCFCRRSQLPLALAVLGKMMKL 144
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
G +PD + ++ Y I +A+ + M P+ +TF LI L
Sbjct: 145 GYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGL 195
>sp|P0C8Q3|PP326_ARATH Pentatricopeptide repeat-containing protein At4g19890
OS=Arabidopsis thaliana GN=At4g19890 PE=2 SV=1
Length = 701
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+QN+++ AL F + K ++ D+ L + +I + K++ +E LF + GL P
Sbjct: 475 KQNDINQALAFFCRMNK-TGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTK 533
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
YT MI Y + G ID A++ + MK GC P T+ LI L
Sbjct: 534 ETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGL 578
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 111 ALKVF-NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
A ++F VR + YKP++ Y+ MI K ++ AE LF +K++GL P+ YT +
Sbjct: 341 AFRLFLKLVRSDT-YKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTL 399
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
I + + G +A E M G P+ T+ I +L
Sbjct: 400 INGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSL 438
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P Y+ MI K I +A + F +K+ G PD+ Y +I + M+D+A +
Sbjct: 531 PTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKL 590
Query: 186 YETMKASGCTPHKLT 200
YE M G +P ++T
Sbjct: 591 YEAMIDRGLSPPEVT 605
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCEL-KKEGLDPDTRVYTEMIGVYLQVGMIDKA 182
+KP++ ++ +I L K A LF +L + + P+ YT MIG Y + +++A
Sbjct: 318 WKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRA 377
Query: 183 METYETMKASGCTPHKLTFTILIRNLENAG 212
+ MK G P+ T+T LI AG
Sbjct: 378 EMLFSRMKEQGLFPNVNTYTTLINGHCKAG 407
Score = 38.5 bits (88), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD S Y M++ ++ +I A+ + + G PD T ++ + G++++A+
Sbjct: 215 PDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWY 274
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ M G P+ + FT LI L G
Sbjct: 275 FRKMIDLGFKPNLINFTSLIDGLCKKG 301
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 105 QNELDLALKVFNF-VRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ LD A ++F F V K+ + PD+ Y+ +I K+K++ ELF E+ GL DT
Sbjct: 378 HDRLDKAKQMFEFMVSKDCF--PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDT 435
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
YT +I G D A + ++ M + G P +T++IL+ L N G+ E
Sbjct: 436 VTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE 487
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L +L+ AL+VF++++K K D+ +Y+ MI + K ++ +LFC L +G
Sbjct: 477 LDGLCNNGKLEKALEVFDYMQKS-EIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKG 535
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI----RNLENAGEE 214
+ P+ Y MI ++ +A + MK G P+ T+ LI R+ + A
Sbjct: 536 VKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASA 595
Query: 215 ELVAAVR 221
EL+ +R
Sbjct: 596 ELIREMR 602
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
P+L ++ +I K + AE+L+ ++ K +DPD Y ++ + +DKA +
Sbjct: 327 NPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQ 386
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
+E M + C P +T+ LI+
Sbjct: 387 MFEFMVSKDCFPDVVTYNTLIKGF 410
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 7/139 (5%)
Query: 76 SSKLEEG---FQSRICRLLKADLLDTLT---ELRRQNELDLALKVFNFVRKEVWYKPDLS 129
S ++E+G F+ R L D + T L + D A KVF + + PD+
Sbjct: 413 SKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSD-GVPPDIM 471
Query: 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM 189
YS ++ L N ++ A E+F ++K + D +YT MI + G +D + + ++
Sbjct: 472 TYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSL 531
Query: 190 KASGCTPHKLTFTILIRNL 208
G P+ +T+ +I L
Sbjct: 532 SLKGVKPNVVTYNTMISGL 550
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R++++ LAL + + K + Y+P + S ++ K+I+ A L ++ + G PDT
Sbjct: 132 RRSQISLALALLGKMMK-LGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDT 190
Query: 164 RVYTEMI-GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
+T +I G++L +A+ + M GC P+ +T+ +++ L G+ +L
Sbjct: 191 ITFTTLIHGLFLH-NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDL 243
Score = 34.7 bits (78), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 43/87 (49%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D Y+ +I L + A+++F ++ +G+ PD Y+ ++ G ++KA+E +
Sbjct: 434 DTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVF 493
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGE 213
+ M+ S +T +I + AG+
Sbjct: 494 DYMQKSEIKLDIYIYTTMIEGMCKAGK 520
>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130
OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
Length = 591
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D+S Y+ +I + GK + EELF ELK++ PD +T IG Y + + K +E +
Sbjct: 473 DISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVF 532
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
E M SGC P T +L+ + + E V +V R
Sbjct: 533 EEMIDSGCAPDGGTAKVLLSACSSEEQVEQVTSVLR 568
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ Y+ ++ + AEE+F +L+++GL+PD VY ++ Y + G A E
Sbjct: 296 KPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAE 355
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG 212
+ M+ GC P + ++ I++ AG
Sbjct: 356 IFSLMQHMGCEPDRASYNIMVDAYGRAG 383
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
++R+ + A+ VF ++++ KP Y+ MI + GK + M+ +L+CE++ P
Sbjct: 239 MKRKGNTEEAIDVFQRMKRDRC-KPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKP 297
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
+ YT ++ + + G+ +KA E +E ++ G P + L+ + AG
Sbjct: 298 NICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAG 348
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 52/110 (47%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153
DL++ +LR + D + V ++ ++ ++PD+ ++ +I G+ Q AE L+ +
Sbjct: 121 DLINVSVQLRLNKKWDSIILVCEWILRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQ 180
Query: 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTI 203
L + P Y +I Y G+I++A M+ +P + T+
Sbjct: 181 LLESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTV 230
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 129 SLYSDMILM--LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
++ S M+L+ K + + E + E+ + G++PDT V M+ +Y ++G K +
Sbjct: 403 TMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKIL 462
Query: 187 ETMKASGCTPHKLTFTILIRNLENAG 212
M+ CT T+ ILI AG
Sbjct: 463 AEMENGPCTADISTYNILINIYGKAG 488
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 49/111 (44%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ +Y+ ++ + A E+F ++ G +PD Y M+ Y + G+ A
Sbjct: 331 EPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEA 390
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFL 235
+E MK G P + +L+ A + A+ ++ + P+ F+
Sbjct: 391 VFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFV 441
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R ELD K+ V K KP+ +Y +I +L + ++A AEE F E+ ++G+ PDT
Sbjct: 293 RFGELDKVWKLIE-VMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDT 351
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
VYT +I + + G I A + + M + TP LT+T +I G+
Sbjct: 352 VVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGD 401
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I + + A +LF E+ +GL+PD+ +TE+I Y + G + A
Sbjct: 384 PDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRV 443
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+ M +GC+P+ +T+T LI L G+
Sbjct: 444 HNHMIQAGCSPNVVTYTTLIDGLCKEGD 471
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 61/145 (42%), Gaps = 19/145 (13%)
Query: 82 GFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141
G RIC+L +A+ + +E+ RQ L PD +Y+ +I K
Sbjct: 324 GLLCRICKLAEAE--EAFSEMIRQGIL-----------------PDTVVYTTLIDGFCKR 364
Query: 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF 201
I A + F E+ + PD YT +I + Q+G + +A + + M G P +TF
Sbjct: 365 GDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTF 424
Query: 202 TILIRNLENAGEEELVAAVRRDCIQ 226
T LI AG + V IQ
Sbjct: 425 TELINGYCKAGHMKDAFRVHNHMIQ 449
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 102 LRRQNELDLALKVFNFVRKEVW---YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L ++ +LD A N + E+W +P++ Y+ ++ L K+ I A +L E + G
Sbjct: 466 LCKEGDLDSA----NELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAG 521
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
L+ DT YT ++ Y + G +DKA E + M G P +TF +L+
Sbjct: 522 LNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGF 571
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 6/135 (4%)
Query: 83 FQSRICRLLKADLLDTLTELR----RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILML 138
F C+ L+ D + T TEL + + A +V N + + P++ Y+ +I L
Sbjct: 409 FHEMFCKGLEPDSV-TFTELINGYCKAGHMKDAFRVHNHM-IQAGCSPNVVTYTTLIDGL 466
Query: 139 GKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK 198
K + A EL E+ K GL P+ Y ++ + G I++A++ +A+G
Sbjct: 467 CKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADT 526
Query: 199 LTFTILIRNLENAGE 213
+T+T L+ +GE
Sbjct: 527 VTYTTLMDAYCKSGE 541
Score = 35.4 bits (80), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 123 WYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKA 182
W ++ + LG+ K+ A L ++ +G PD Y+ ++ Y + G +DK
Sbjct: 244 WNVASYNIVIHFVCQLGRIKE---AHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKV 300
Query: 183 METYETMKASGCTPHKLTFTILI 205
+ E MK G P+ + +I
Sbjct: 301 WKLIEVMKRKGLKPNSYIYGSII 323
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I K+K++ +LFCE+ +GL D Y +I Y Q G ++ A +
Sbjct: 322 PDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKV 381
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ M G +P +T+ IL+ L N G+ E
Sbjct: 382 FNRMVDCGVSPDIVTYNILLDCLCNNGKIE 411
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ P++ +Y+ +I L KN+ + A E+F ++K+G+ D Y +I G A
Sbjct: 180 FVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAA 239
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGE 213
M P+ + FT LI G
Sbjct: 240 RLLRDMVKRKIDPNVIFFTALIDTFVKEGN 269
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/106 (18%), Positives = 45/106 (42%)
Query: 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
++ ++P + ++ + + A L + G P+ +Y +I + ++
Sbjct: 142 KLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLN 201
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
A+E + M+ G +T+ LI L N+G A + RD ++
Sbjct: 202 NALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVK 247
>sp|Q8VZE4|PP299_ARATH Pentatricopeptide repeat-containing protein At4g01570
OS=Arabidopsis thaliana GN=At4g01570 PE=2 SV=1
Length = 805
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + DLA V + + K+ Y D+ +Y+ +I LGK ++ A +LF +K G++P
Sbjct: 675 LGKMGRADLASAVLDRLTKQGGYL-DIVMYNTLINALGKATRLDEATQLFDHMKSNGINP 733
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTIL 204
D Y MI V + G + +A + + M +GC P+ +T TIL
Sbjct: 734 DVVSYNTMIEVNSKAGKLKEAYKYLKAMLDAGCLPNHVTDTIL 776
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 45/87 (51%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D++ Y+ +I LGK + +A + L K+G D +Y +I + +D+A + +
Sbjct: 664 DIATYNVIIQGLGKMGRADLASAVLDRLTKQGGYLDIVMYNTLINALGKATRLDEATQLF 723
Query: 187 ETMKASGCTPHKLTFTILIRNLENAGE 213
+ MK++G P +++ +I AG+
Sbjct: 724 DHMKSNGINPDVVSYNTMIEVNSKAGK 750
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
Query: 106 NELDLALKVFNFV--RKEVW---YKPDLSLYSDMILML---GKNKQIAMAEELFCELKKE 157
+LD AL +F + R V+ + PD+ Y+ +I +L GK K + + ELK
Sbjct: 262 GDLDAALSLFKEMKERSSVYGSSFGPDICTYNSLIHVLCLFGKAKDALIVWD---ELKVS 318
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
G +PD Y +I + +D AM Y M+ +G P + + L+
Sbjct: 319 GHEPDNSTYRILIQGCCKSYRMDDAMRIYGEMQYNGFVPDTIVYNCLL 366
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++PD S Y +I K+ ++ A ++ E++ G PDT VY ++ L+ + +A
Sbjct: 320 HEPDNSTYRILIQGCCKSYRMDDAMRIYGEMQYNGFVPDTIVYNCLLDGTLKARKVTEAC 379
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ +E M G T+ ILI L G E
Sbjct: 380 QLFEKMVQEGVRASCWTYNILIDGLFRNGRAE 411
>sp|Q9C6S6|PPR67_ARATH Putative pentatricopeptide repeat-containing protein At1g31840
OS=Arabidopsis thaliana GN=At1g31840 PE=2 SV=2
Length = 840
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
++ E+D A +F V ++ +PDL YS +I K + M +LF + +G+ D
Sbjct: 298 KRGEMDRAFDLFK-VMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDV 356
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
V++ I VY++ G + A Y+ M G +P+ +T+TILI+ L G
Sbjct: 357 VVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDG 405
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
+ L++F+ +++ D+++ + +I +L K +I A + F L + ++PD Y M
Sbjct: 584 IGLQLFDLMQRN-KISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTM 642
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
I Y + +D+A +E +K + P+ +T TILI L
Sbjct: 643 ICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVL 681
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L + N++D A+++F+ + E KP+ Y ++ K+ I + +LF E++++G+ P
Sbjct: 681 LCKNNDMDGAIRMFS-IMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISP 739
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
Y+ +I + G +D+A + + P + + ILIR G
Sbjct: 740 SIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVG 790
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 105 QNELDLALKVFNFVRKEVWYK--------PDLSLYSDMILMLGKNKQIAMAEELFCELKK 156
+ +D+ +K + V YK P++ Y+ +I L ++ +I A ++ ++ K
Sbjct: 360 SSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILK 419
Query: 157 EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
G++P Y+ +I + + G + YE M G P + + +L+ L G
Sbjct: 420 RGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQG 475
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+PD+ Y+ MI +++ AE +F LK P+T T +I V + +D A+
Sbjct: 633 EPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIR 692
Query: 185 TYETMKASGCTPHKLTFTILI 205
+ M G P+ +T+ L+
Sbjct: 693 MFSIMAEKGSKPNAVTYGCLM 713
Score = 35.0 bits (79), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 14/135 (10%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y PD+ +Y ++ L K + A ++ + + + V+ +I + ++ D+A+
Sbjct: 457 YPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEAL 516
Query: 184 ETYETMKASGCTPHKLTFTILIRN--LENAGEEELVAAVRR-------DCIQYVEFPERF 234
+ + M G P TFT ++R +E EE L R D + Y
Sbjct: 517 KVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCT----- 571
Query: 235 LEEVYQKHRKTQVDL 249
L + + KH K + L
Sbjct: 572 LIDAFCKHMKPTIGL 586
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P + YS +I L K ++ A +F + L PD Y +I Y +VG + +A
Sbjct: 739 PSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRLVEAALL 798
Query: 186 YETMKASGCTPHKL 199
YE M +G P L
Sbjct: 799 YEHMLRNGVKPDDL 812
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R N D ALKVF + KPD++ ++ ++ + ++ A LF + K GL+PD
Sbjct: 508 RLNRFDEALKVFRLM-GIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDA 566
Query: 164 RVYTEMIGVY 173
Y +I +
Sbjct: 567 LAYCTLIDAF 576
>sp|Q7X6A5|PPR81_ARATH Pentatricopeptide repeat-containing protein At1g55630
OS=Arabidopsis thaliana GN=At1g55630 PE=2 SV=1
Length = 477
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R +L+ A K F +V PD+ Y+ MI ++ AEE+F E+ ++G P
Sbjct: 337 LSRAGKLE-ACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLP 395
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
+ Y MI + G +A + M++ GC P+ + ++ L+ NL+NAG+ V
Sbjct: 396 NVFTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVYSTLVNNLKNAGKVLEAHEVV 455
Query: 222 RDCIQ 226
+D ++
Sbjct: 456 KDMVE 460
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
L L N+ AL + N +R EV +P + ++ +I L + ++ + E K G
Sbjct: 299 LHHLATGNKPLAALNLLNHMR-EVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVG 357
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
PD YT MI Y+ G ++KA E ++ M G P+ T+ +IR AG+
Sbjct: 358 CTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGK 412
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 49/111 (44%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
+ PDL Y+ ++ L + A L +++ G++P +T +I + G ++
Sbjct: 288 FSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACK 347
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERF 234
+ GCTP + +T++I + GE E + ++ + + P F
Sbjct: 348 YFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVF 398
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 117 FVRKEVW-YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175
F++ + + Y+P Y+ ++ L KQ + + ++ ++ ++G PD Y ++ +
Sbjct: 210 FIKSKTFNYRPYKHSYNAILHSLLGVKQYKLIDWVYEQMLEDGFTPDVLTYNIVMFANFR 269
Query: 176 VGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218
+G D+ + M G +P T+ IL+ +L G + L A
Sbjct: 270 LGKTDRLYRLLDEMVKDGFSPDLYTYNILLHHLA-TGNKPLAA 311
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%)
Query: 87 ICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAM 146
ICR + L+ + + N + A +F K++ +P L Y+ +I L + I +
Sbjct: 744 ICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEI 803
Query: 147 AEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206
A+++F ++K G PD Y ++ Y + G ID+ E Y+ M C + +T I+I
Sbjct: 804 AQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVIS 863
Query: 207 NLENAGE 213
L AG
Sbjct: 864 GLVKAGN 870
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++P L YS +++ LGK + I L E++ GL P+ +T I V + G I++A
Sbjct: 219 FRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAY 278
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYV 228
E + M GC P +T+T+LI + L A + DC + V
Sbjct: 279 EILKRMDDEGCGPDVVTYTVLI--------DALCTARKLDCAKEV 315
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 54/103 (52%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L + + L+ AL +FN ++ PDL Y+ +IL LG + A +++ E+++ G
Sbjct: 1003 INGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAG 1062
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF 201
L+P+ + +I Y G + A Y+TM G +P+ T+
Sbjct: 1063 LEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTY 1105
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L + R +E L F + KE PD+ Y+ +I LGK+ ++ A LF E+
Sbjct: 967 LVDCLCMVGRVDE---GLHYFKEL-KESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEM 1022
Query: 155 KKE-GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
K G+ PD Y +I GM+++A + Y ++ +G P+ TF LIR +G+
Sbjct: 1023 KTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGK 1082
Query: 214 EELVAAV 220
E AV
Sbjct: 1083 PEHAYAV 1089
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P+ ++Y+ +I GK + A LF + KEG+ PD + Y+ ++ VG +D+ +
Sbjct: 923 RPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLH 982
Query: 185 TYETMKASGCTPHKLTFTILIRNLENAG--EEELV 217
++ +K SG P + + ++I L + EE LV
Sbjct: 983 YFKELKESGLNPDVVCYNLIINGLGKSHRLEEALV 1017
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 2/141 (1%)
Query: 76 SSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMI 135
+ +L EG CR A + + E D A +F + KE +PDL YS ++
Sbjct: 910 AKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKE-GVRPDLKTYSVLV 968
Query: 136 LMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS-GC 194
L ++ F ELK+ GL+PD Y +I + +++A+ + MK S G
Sbjct: 969 DCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGI 1028
Query: 195 TPHKLTFTILIRNLENAGEEE 215
TP T+ LI NL AG E
Sbjct: 1029 TPDLYTYNSLILNLGIAGMVE 1049
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+D L R+ LD A +VF + K +KPD Y ++ N+ + ++ + E+
Sbjct: 299 LIDALCTARK---LDCAKEVFEKM-KTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEM 354
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+K+G PD +T ++ + G +A +T + M+ G P+ T+ LI L
Sbjct: 355 EKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGL 408
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Query: 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158
+ L + + +D A K+F KE+ KP + Y+ ++ LGKN +I A ELF + ++G
Sbjct: 545 INTLYKADRVDEAWKMF-MRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKG 603
Query: 159 LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
P+T + + + + A++ M GC P T+ +I L G+
Sbjct: 604 CPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQ 658
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 129 SLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYET 188
SLYS + G++++ A+++F LK GL PD+ Y M+ Y +VG ID+A++
Sbjct: 474 SLYS--LAKAGRDRE---AKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSE 528
Query: 189 MKASGCTPHKLTFTILIRNLENA 211
M +GC P + LI L A
Sbjct: 529 MMENGCEPDVIVVNSLINTLYKA 551
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KP++ ++ I +LG+ +I A E+ + EG PD YT +I +D A E
Sbjct: 255 KPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKE 314
Query: 185 TYETMKASGCTPHKLTFTILI 205
+E MK P ++T+ L+
Sbjct: 315 VFEKMKTGRHKPDRVTYITLL 335
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+L Y+ +I L + ++ A ELF ++ G+ P Y I Y + G A+ET
Sbjct: 396 PNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALET 455
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEE 214
+E MK G P+ + + +L AG +
Sbjct: 456 FEKMKTKGIAPNIVACNASLYSLAKAGRD 484
Score = 38.5 bits (88), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ Y+ +I L +++ A+E+F ++K PD Y ++ + +D +
Sbjct: 291 PDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQF 350
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGE 213
+ M+ G P +TFTIL+ L AG
Sbjct: 351 WSEMEKDGHVPDVVTFTILVDALCKAGN 378
Score = 35.0 bits (79), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD++ Y+ ++ GK+ +I EL+ E+ + +T + +I ++ G +D A++
Sbjct: 818 PDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDL 877
Query: 186 -YETMKASGCTPHKLTFTILIRNLENAG 212
Y+ M +P T+ LI L +G
Sbjct: 878 YYDLMSDRDFSPTACTYGPLIDGLSKSG 905
>sp|Q9FMU2|PP380_ARATH Pentatricopeptide repeat-containing protein At5g14080
OS=Arabidopsis thaliana GN=At5g14080 PE=2 SV=2
Length = 634
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Query: 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161
L R ++ D +K + + + ++ +L YS MI L K ++ + E+KKEGL P
Sbjct: 372 LCRHDKSDHLIKAYELLSSKGYFS-ELQSYSLMISFLCKAGRVRESYTALQEMKKEGLAP 430
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
D +Y +I + MI A + ++ M GC + T+ +LIR L GE E
Sbjct: 431 DVSLYNALIEACCKAEMIRPAKKLWDEMFVEGCKMNLTTYNVLIRKLSEEGEAE 484
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 48/101 (47%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+SLY+ +I K + I A++L+ E+ EG + Y +I + G ++++
Sbjct: 430 PDVSLYNALIEACCKAEMIRPAKKLWDEMFVEGCKMNLTTYNVLIRKLSEEGEAEESLRL 489
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226
++ M G P + + LI L + E V R C++
Sbjct: 490 FDKMLERGIEPDETIYMSLIEGLCKETKIEAAMEVFRKCME 530
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 82 GFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141
GF+ I L A ++D N LAL FN+ ++ Y D Y + L +
Sbjct: 40 GFRHSISPSLVARVIDPFL----LNHHSLALGFFNWAAQQPGYSHDSISYHSIFKSLSLS 95
Query: 142 KQIAMAEELFCELKKEGLDPDTRVYTEMI 170
+Q + + LF ++K + D+ VY +I
Sbjct: 96 RQFSAMDALFKQVKSNKILLDSSVYRSLI 124
>sp|Q9SJN2|PP187_ARATH Pentatricopeptide repeat-containing protein At2g36240
OS=Arabidopsis thaliana GN=At2g36240 PE=2 SV=1
Length = 497
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 58/112 (51%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R ++D AL F+ +++ + KP++ +Y+ ++ K+ + A + + KE PD
Sbjct: 169 RARKMDYALLAFDTMKRLIDGKPNVGVYNTVVNGYVKSGDMDKALRFYQRMGKERAKPDV 228
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ +I Y + D A++ + MK GC P+ ++F LIR ++G+ E
Sbjct: 229 CTFNILINGYCRSSKFDLALDLFREMKEKGCEPNVVSFNTLIRGFLSSGKIE 280
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 84/202 (41%), Gaps = 25/202 (12%)
Query: 57 RVLSSEAIQAVHAMKLAKSSSKLEEGFQSRI---CRLLKADL----LDTLTEL------- 102
R+LS A S +LE F+S I CR K D DT+ L
Sbjct: 134 RLLSFVAANPCPCSSGIFSCPELEPIFRSAIDAYCRARKMDYALLAFDTMKRLIDGKPNV 193
Query: 103 ----------RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
+ ++D AL+ + + KE KPD+ ++ +I ++ + +A +LF
Sbjct: 194 GVYNTVVNGYVKSGDMDKALRFYQRMGKER-AKPDVCTFNILINGYCRSSKFDLALDLFR 252
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
E+K++G +P+ + +I +L G I++ ++ M GC + T IL+ L G
Sbjct: 253 EMKEKGCEPNVVSFNTLIRGFLSSGKIEEGVKMAYEMIELGCRFSEATCEILVDGLCREG 312
Query: 213 EEELVAAVRRDCIQYVEFPERF 234
+ + D + P F
Sbjct: 313 RVDDACGLVLDLLNKRVLPSEF 334
Score = 37.7 bits (86), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 11/142 (7%)
Query: 75 SSSKLEEGFQSRI------CRLLKADLLDTLTELRRQNELDLALK-VFNFVRKEVWYKPD 127
SS K+EEG + CR +A + L R+ +D A V + + K V P
Sbjct: 275 SSGKIEEGVKMAYEMIELGCRFSEATCEILVDGLCREGRVDDACGLVLDLLNKRVL--PS 332
Query: 128 LSLYSDMILML-GKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
Y ++ L G+NK + A E+ EL K+G P T ++ + G +KA
Sbjct: 333 EFDYGSLVEKLCGENKAVR-AMEMMEELWKKGQTPCFIACTTLVEGLRKSGRTEKASGFM 391
Query: 187 ETMKASGCTPHKLTFTILIRNL 208
E M +G P +TF +L+R+L
Sbjct: 392 EKMMNAGILPDSVTFNLLLRDL 413
>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100
OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
Length = 472
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 4/125 (3%)
Query: 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAE-ELFCELKK 156
L L +N+L+LA K + +R E+ P ++ + +I L +N A ++F E+ K
Sbjct: 127 VLAILVEENQLNLAFKFYKNMR-EIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPK 185
Query: 157 EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
G DPD+ Y +I + G ID+A + + M C P +T+T LI L G + +
Sbjct: 186 RGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGL--CGSKNV 243
Query: 217 VAAVR 221
A+R
Sbjct: 244 DEAMR 248
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Query: 99 LTELRRQNELDLALKVFN-FVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157
++ L R +D A K+F V K+ P + Y+ +I L +K + A E+K +
Sbjct: 199 ISGLCRFGRIDEAKKLFTEMVEKDC--APTVVTYTSLINGLCGSKNVDEAMRYLEEMKSK 256
Query: 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
G++P+ Y+ ++ + G +AME +E M A GC P+ +T+T LI L
Sbjct: 257 GIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGL 307
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Query: 103 RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162
R +D LK+F + K PD Y +I L + +I A++LF E+ ++ P
Sbjct: 168 RNDGTVDAGLKIFLEMPKR-GCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPT 226
Query: 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
YT +I +D+AM E MK+ G P+ T++ L+ L G
Sbjct: 227 VVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDG 276
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
+P++ Y+ +I L K ++I A EL + +GL PD +Y ++I + + +A
Sbjct: 294 RPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAAN 353
Query: 185 TYETMKASGCTPHKLTFTILIR 206
+ M G TP++LT+ I ++
Sbjct: 354 FLDEMILGGITPNRLTWNIHVK 375
>sp|Q9SAK0|PP132_ARATH Pentatricopeptide repeat-containing protein At1g79490,
mitochondrial OS=Arabidopsis thaliana GN=EMB2217 PE=2
SV=1
Length = 836
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 69/130 (53%), Gaps = 4/130 (3%)
Query: 81 EGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK 140
+GF R + L+D+ + +LD AL++++ ++K ++P+ LY+ +I K
Sbjct: 375 QGFGHRPSATMFVSLIDSYA---KAGKLDTALRLWDEMKKS-GFRPNFGLYTMIIESHAK 430
Query: 141 NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT 200
+ ++ +A +F +++K G P Y+ ++ ++ G +D AM+ Y +M +G P +
Sbjct: 431 SGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNAGLRPGLSS 490
Query: 201 FTILIRNLEN 210
+ L+ L N
Sbjct: 491 YISLLTLLAN 500
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
Query: 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFC 152
+ L+D++ + R LD ++KV+ + ++P +++ +I K ++ A L+
Sbjct: 352 SSLVDSMGKAGR---LDTSMKVY-MEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWD 407
Query: 153 ELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
E+KK G P+ +YT +I + + G ++ AM ++ M+ +G P T++ L+ +G
Sbjct: 408 EMKKSGFRPNFGLYTMIIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSG 467
Query: 213 E 213
+
Sbjct: 468 Q 468
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 38/157 (24%)
Query: 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKP--------------------------- 126
+++ L+ E+D AL +F + +K+ WY P
Sbjct: 171 NMVHITQSLKIVKEVDAALSLFRWAKKQPWYLPSDECYVVLFDGLNQGRDFVGIQSLFEE 230
Query: 127 ---------DLSL--YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175
DLS Y+ +I L K +++ +A F + ++ G DT+ Y ++ ++L
Sbjct: 231 MVQDSSSHGDLSFNAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLN 290
Query: 176 VGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
G+ KA E YE+M+ + T+ ++I +L +G
Sbjct: 291 KGLPYKAFEIYESMEKTDSLLDGSTYELIIPSLAKSG 327
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ +L++A+ VF + K + P S YS ++ M + Q+ A +++ + GL P
Sbjct: 430 KSGKLEVAMTVFKDMEK-AGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNAGLRPGL 488
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASG 193
Y ++ + ++D A + MKA G
Sbjct: 489 SSYISLLTLLANKRLVDVAGKILLEMKAMG 518
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 19/144 (13%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD+ +S +I K ++ AEEL E+ + G+ PDT YT +I + + +DKA
Sbjct: 315 PDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHM 374
Query: 186 YETMKASGCTPHKLTFTILIR-----NLENAGEEEL----VAAVRRDCIQYVEFPERFLE 236
+ M + GC P+ TF ILI NL + G E + V D + Y + F E
Sbjct: 375 LDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 434
Query: 237 --------EVYQK--HRKTQVDLV 250
E++Q+ R+ + D+V
Sbjct: 435 LGKLEVAKELFQEMVSRRVRPDIV 458
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 10/133 (7%)
Query: 80 EEGFQSRICRLLKAD------LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSD 133
+E FQ + R ++ D LLD L + E + AL++F + K + D+ +Y+
Sbjct: 442 KELFQEMVSRRVRPDIVSYKILLDGLCD---NGEPEKALEIFEKIEKS-KMELDIGIYNI 497
Query: 134 MILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG 193
+I + ++ A +LFC L +G+ PD + Y MIG + G + +A + M+ G
Sbjct: 498 IIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDG 557
Query: 194 CTPHKLTFTILIR 206
+P+ T+ ILIR
Sbjct: 558 HSPNGCTYNILIR 570
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 9/122 (7%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
K D YS +I L K+ + A LF E++ +G D +YT +I + G D +
Sbjct: 244 KLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAK 303
Query: 185 TYETMKASGCTPHKLTFTILI---------RNLENAGEEELVAAVRRDCIQYVEFPERFL 235
M TP + F+ LI R E +E + + D + Y + F
Sbjct: 304 LLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFC 363
Query: 236 EE 237
+E
Sbjct: 364 KE 365
>sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840
OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2
Length = 1096
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 15/158 (9%)
Query: 79 LEEGFQSR-----IC--RLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLY 131
L GF R +C R+ ++D L + LD A+ + N + K+ PD+ Y
Sbjct: 386 LARGFYMRMKRNGVCVGRITYTGMIDGLC---KNGFLDEAVVLLNEMSKD-GIDPDIVTY 441
Query: 132 SDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA 191
S +I K + A+E+ C + + GL P+ +Y+ +I ++G + +A+ YE M
Sbjct: 442 SALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMIL 501
Query: 192 SGCTPHKLTFTILIRNLENAGE----EELVAAVRRDCI 225
G T TF +L+ +L AG+ EE + + D I
Sbjct: 502 EGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGI 539
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 101 ELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD 160
+L R N + + +RK + + P+ Y+ +I ++ +A +L E+ GL
Sbjct: 272 DLCRSNRIAKGYLLLRDMRKRMIH-PNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLS 330
Query: 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216
P+ + +I ++ G +A++ + M+A G TP ++++ +L+ L E +L
Sbjct: 331 PNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDL 386
Score = 37.7 bits (86), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
ALK+F + + ++S Y ++ L KN + +A + +K+ G+ YT MI
Sbjct: 352 ALKMFYMMEAKGLTPSEVS-YGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMI 410
Query: 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE----EELVAAVRR 222
+ G +D+A+ M G P +T++ LI G +E+V + R
Sbjct: 411 DGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYR 466
Score = 37.4 bits (85), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 134 MILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG 193
M+ +L +N + + + E+ K+G+ P++R Y +I +VG I A E M A
Sbjct: 865 MVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHK 924
Query: 194 CTPHKLTFTILIRNLENAGEEE 215
P + + ++R L G+ +
Sbjct: 925 ICPPNVAESAMVRALAKCGKAD 946
Score = 35.4 bits (80), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 6/131 (4%)
Query: 80 EEGFQSRIC--RLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILM 137
EE +IC + ++ ++ L + + +E L L+ F K V P ++ ++ ++ +
Sbjct: 918 EEMIAHKICPPNVAESAMVRALAKCGKADEATLLLR-FMLKMKLV---PTIASFTTLMHL 973
Query: 138 LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH 197
KN + A EL + GL D Y +I G + A E YE MK G +
Sbjct: 974 CCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLAN 1033
Query: 198 KLTFTILIRNL 208
T+ LIR L
Sbjct: 1034 ATTYKALIRGL 1044
Score = 35.0 bits (79), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 38/90 (42%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
Y P + Y+ ++ K + A EL +K +G+D D Y +I + I K
Sbjct: 224 YAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGY 283
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGE 213
M+ P+++T+ LI N G+
Sbjct: 284 LLLRDMRKRMIHPNEVTYNTLINGFSNEGK 313
Score = 35.0 bits (79), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
D +Y+ ++ + K+ +A A LF E+ + + PD+ YT +I + G A+
Sbjct: 612 DTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFA 671
Query: 187 ETMKASG-CTPHKLTFTILIRNLENAGE 213
+ +A G P+K+ +T + + AG+
Sbjct: 672 KEAEARGNVLPNKVMYTCFVDGMFKAGQ 699
Score = 34.7 bits (78), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 112 LKVFNFVRKEVWYK--PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169
+ V++F+++ + K PD++ ++ +I +L + L +++K G P Y +
Sbjct: 175 VSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTV 234
Query: 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
+ Y + G A+E + MK+ G T+ +LI +L
Sbjct: 235 LHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDL 273
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 124 YKPDLSLYSDMILMLGKNKQI---AMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
Y P + ++ LM GK+ + M C + + VY +I VYL+ GMI
Sbjct: 88 YDPARHILKELSLMSGKSSFVFGALMTTYRLC-------NSNPSVYDILIRVYLREGMIQ 140
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
++E + M G P T ++ ++ +GE+
Sbjct: 141 DSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGED 174
>sp|Q9LK58|PP225_ARATH Pentatricopeptide repeat-containing protein At3g13150
OS=Arabidopsis thaliana GN=At3g13150 PE=2 SV=1
Length = 551
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 19/160 (11%)
Query: 87 ICRLLKADLLDTLTELRRQNELDLALKVFN-----FVRKE-------VW-------YKPD 127
+CR D + ++ E +N + L FN F R+E +W P+
Sbjct: 203 LCRKGSMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPN 262
Query: 128 LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYE 187
+ Y+ + L +NK+ A L +K EG+ PD Y +I Y +++ M+ Y
Sbjct: 263 IRSYNSRVRGLTRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYN 322
Query: 188 TMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227
MK G TP +T+ +LI L G+ + V + I++
Sbjct: 323 EMKEKGLTPDTVTYCMLIPLLCKKGDLDRAVEVSEEAIKH 362
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 51/102 (50%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
+LD A+K F + +++ PDL Y+ MI L + + +F EL+K G +PD +
Sbjct: 172 KLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDILSIFEELEKNGFEPDLISF 231
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208
++ + + + + ++ MK+ +P+ ++ +R L
Sbjct: 232 NTLLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNSRVRGL 273
Score = 34.3 bits (77), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 74/166 (44%), Gaps = 28/166 (16%)
Query: 57 RVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTE-LRRQNELDLALKVF 115
R SE+ + VH + + + I RL +A T+ E L+ Q + D +K
Sbjct: 76 RSCESESFRQVHGL------------YSAFIRRLREAKKFSTIDEVLQYQKKFD-DIKSE 122
Query: 116 NFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175
+FV + ++L+ G + A +LF E+ + + + + ++ Y+
Sbjct: 123 DFVIR-------------IMLLYGYSGMAEHAHKLFDEMPELNCERTVKSFNALLSAYVN 169
Query: 176 VGMIDKAMETYETMKAS-GCTPHKLTFTILIRNLENAGEEELVAAV 220
+D+AM+T++ + G TP +T+ +I+ L G + + ++
Sbjct: 170 SKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDILSI 215
>sp|O80958|PP194_ARATH Pentatricopeptide repeat-containing protein At2g39230,
mitochondrial OS=Arabidopsis thaliana GN=LOJ PE=1 SV=1
Length = 867
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 1/135 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ N +DLAL++ + + K + K DL Y +I K + A LF EL + GL P+
Sbjct: 637 KSNRMDLALEMTHEM-KSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNV 695
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223
VY +I + +G +D A++ Y+ M G + T+T +I L G L + + +
Sbjct: 696 SVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGNINLASDLYSE 755
Query: 224 CIQYVEFPERFLEEV 238
+ P+ L V
Sbjct: 756 LLDLGIVPDEILHMV 770
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 15/145 (10%)
Query: 70 MKLAKS--SSKLEEGFQSRICRLLKADLLDTLTELR-RQNELDLA--LKVFNFVRKEVWY 124
M LA+S S LE+G + + L+D + + QN D+ + NF EV
Sbjct: 500 MDLARSIFSEMLEKGLEPN--NFTYSILIDGFFKNKDEQNAWDVINQMNASNFEANEV-- 555
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG-LDPDTRVYTEMIGVYLQVGMIDKAM 183
+Y+ +I L K Q + A+E+ L KE Y +I +++VG D A+
Sbjct: 556 -----IYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSCTSYNSIIDGFVKVGDTDSAV 610
Query: 184 ETYETMKASGCTPHKLTFTILIRNL 208
ETY M +G +P+ +TFT LI
Sbjct: 611 ETYREMSENGKSPNVVTFTSLINGF 635
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
++N++ A +F+ + E+ P++S+Y+ +I ++ A +L+ ++ +G+ D
Sbjct: 672 KKNDMKTAYTLFSEL-PELGLMPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDL 730
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
YT MI L+ G I+ A + Y + G P ++ +L+ L G+
Sbjct: 731 FTYTTMIDGLLKDGNINLASDLYSELLDLGIVPDEILHMVLVNGLSKKGQ 780
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
DL Y+ MI L K+ I +A +L+ EL G+ PD ++ ++ + G KA +
Sbjct: 729 DLFTYTTMIDGLLKDGNINLASDLYSELLDLGIVPDEILHMVLVNGLSKKGQFLKASKML 788
Query: 187 ETMKASGCTPHKLTFTILI 205
E MK TP+ L ++ +I
Sbjct: 789 EEMKKKDVTPNVLLYSTVI 807
Score = 35.0 bits (79), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%)
Query: 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199
K ++ A +LF +++EGL PD +++ M+ + + ++KA+E Y MK+ P +
Sbjct: 357 KGNELGKALDLFNRMEEEGLAPDKVMFSVMVEWFCKNMEMEKAIEFYMRMKSVRIAPSSV 416
Query: 200 TFTILIRNLENAGEEELVAAVRRDCIQ 226
+I+ A E + D +
Sbjct: 417 LVHTMIQGCLKAESPEAALEIFNDSFE 443
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PD L+ ++ L K Q A ++ E+KK+ + P+ +Y+ +I + + G +++A
Sbjct: 763 PDEILHMVLVNGLSKKGQFLKASKMLEEMKKKDVTPNVLLYSTVIAGHHREGNLNEAFRL 822
Query: 186 YETMKASGCTPHKLTFTILI 205
++ M G F +L+
Sbjct: 823 HDEMLEKGIVHDDTVFNLLV 842
Score = 30.8 bits (68), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 19/99 (19%), Positives = 45/99 (45%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
+L +AL + +R ++ Y+ +I+ K + A + E+ G+
Sbjct: 289 DLVMALDLLREMRGKLGVPASQETYTSVIVAFVKEGNMEEAVRVMDEMVGFGIPMSVIAA 348
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205
T ++ Y + + KA++ + M+ G P K+ F++++
Sbjct: 349 TSLVNGYCKGNELGKALDLFNRMEEEGLAPDKVMFSVMV 387
>sp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880
OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1
Length = 743
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 56/108 (51%)
Query: 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164
+ +L+ AL + + E PD Y+ ++ + K +++ +EL ++KK GL P+
Sbjct: 217 EGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRV 276
Query: 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212
Y ++ Y ++G + +A + E MK + P T+ ILI L NAG
Sbjct: 277 TYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAG 324
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
R+ +++ AL++++ ++K V P +S ++ +I L + + +A E F EL + GL PD
Sbjct: 498 REEKVEKALEMWDEMKK-VKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDD 556
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215
+ +I Y + G ++KA E Y P T IL+ L G E
Sbjct: 557 STFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTE 608
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 4/140 (2%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
+LD L + R+ LD A + N K + +++ Y +I+ + +++ A E++ E+
Sbjct: 457 ILDALCKERK---LDEAHNLLNSAHKRGFIVDEVT-YGTLIMGFFREEKVEKALEMWDEM 512
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214
KK + P + +IG G + AME ++ + SG P TF +I G
Sbjct: 513 KKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRV 572
Query: 215 ELVAAVRRDCIQYVEFPERF 234
E + I++ P+ +
Sbjct: 573 EKAFEFYNESIKHSFKPDNY 592
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170
AL FN + +E + D Y+ MI K+K++ A +L E++++GL+PD Y I
Sbjct: 610 ALNFFNTLIEE--REVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFI 667
Query: 171 GVYLQVGMIDKAMETYETMK 190
+ ++ G K ET E +K
Sbjct: 668 SLLMEDG---KLSETDELLK 684
Score = 31.2 bits (69), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL Y+ +I L + EL +K L PD Y +I ++G+ +A +
Sbjct: 308 PDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKL 367
Query: 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222
E M+ G +++T I ++ L EE+ A R+
Sbjct: 368 MEQMENDGVKANQVTHNISLKWL--CKEEKREAVTRK 402
>sp|Q9FZ19|PPR5_ARATH Putative pentatricopeptide repeat-containing protein At1g02420
OS=Arabidopsis thaliana GN=At1g02420 PE=3 SV=2
Length = 491
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD+ Y+ +I + K+++I A +L ++++E PD YT +IG +G DKA E
Sbjct: 243 KPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQPDKARE 302
Query: 185 TYETMKASGCTPHKLTFTILIRNL 208
+ MK GC P + IRN
Sbjct: 303 VLKEMKEYGCYPDVAAYNAAIRNF 326
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183
++PDL ++ ++L K AE F E+K +GL PD Y +I VY + I+KA
Sbjct: 210 FQPDLQTFN---ILLSGWKSSEEAEAFFEEMKGKGLKPDVVTYNSLIDVYCKDREIEKAY 266
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
+ + M+ TP +T+T +I L G+ + V ++ +Y +P+
Sbjct: 267 KLIDKMREEEETPDVITYTTVIGGLGLIGQPDKAREVLKEMKEYGCYPD 315
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 68/149 (45%), Gaps = 7/149 (4%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163
+ E++ A K+ + +R+E PD+ Y+ +I LG Q A E+ E+K+ G PD
Sbjct: 258 KDREIEKAYKLIDKMREEE-ETPDVITYTTVIGGLGLIGQPDKAREVLKEMKEYGCYPDV 316
Query: 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE-----EELVA 218
Y I + + A + + M G +P+ T+ + R L A + E V
Sbjct: 317 AAYNAAIRNFCIARRLGDADKLVDEMVKKGLSPNATTYNLFFRVLSLANDLGRSWELYVR 376
Query: 219 AVRRDCIQYVEFPERFLEEVYQKHRKTQV 247
+ +C+ + FL +++++H K +
Sbjct: 377 MLGNECLPNTQ-SCMFLIKMFKRHEKVDM 404
>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140
OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1
Length = 874
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 12/152 (7%)
Query: 62 EAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKE 121
E IQ +H + L+ S K + + LL ++ + N +D A F VR
Sbjct: 56 EEIQELHNLILSSSIQKTK-----------LSSLLSVVSIFAKSNHIDKAFPQFQLVRSR 104
Query: 122 V-WYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180
KP + LY+ ++ K +++ L+ ++ G+ P T + +I +D
Sbjct: 105 FPENKPSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVD 164
Query: 181 KAMETYETMKASGCTPHKLTFTILIRNLENAG 212
A E ++ M GC P++ TF IL+R AG
Sbjct: 165 AARELFDEMPEKGCKPNEFTFGILVRGYCKAG 196
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 39/83 (46%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
PDL YS ++ L K + A A+ LF E+ E L PD+ Y I + + G I A
Sbjct: 522 PDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRV 581
Query: 186 YETMKASGCTPHKLTFTILIRNL 208
+ M+ GC T+ LI L
Sbjct: 582 LKDMEKKGCHKSLETYNSLILGL 604
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 129 SLYSDMILMLG--KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186
S+YS ILM G K ++ A+ + +K+ G+ PD Y ++ Y VG +D A
Sbjct: 360 SIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLL 419
Query: 187 ETMKASGCTPHKLTFTILIRNLENAG 212
+ M + C P+ T IL+ +L G
Sbjct: 420 QEMMRNNCLPNAYTCNILLHSLWKMG 445
>sp|Q9LKU8|PP401_ARATH Pentatricopeptide repeat-containing protein At5g28460
OS=Arabidopsis thaliana GN=At5g28460 PE=2 SV=1
Length = 766
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184
KPD Y+ +I GK+K E + +++++GLDP Y +I Y VG +D+A++
Sbjct: 578 KPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALK 637
Query: 185 TYETMK-ASGCTPHKLTFTILIRNLENAG 212
++ M S P+ + + ILI G
Sbjct: 638 LFKDMGLHSKVNPNTVIYNILINAFSKLG 666
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
Query: 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179
KE KP++ + ++ + ++ + MA F +++KEG+ + Y +I V +
Sbjct: 433 KEDEIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNV 492
Query: 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR--DCIQYVE 229
+KAM YE M +GC+P + LI L VRR D I+ VE
Sbjct: 493 EKAMYWYEKMLEAGCSPDAKIYYALISGL---------CQVRRDHDAIRVVE 535
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
Query: 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY 166
ELD ALK+F + P+ +Y+ +I K A L E+K + + P+ Y
Sbjct: 631 ELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETY 690
Query: 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217
+ + + ++ + M C P+++T IL+ L +G +ELV
Sbjct: 691 NALFKCLNEKTQGETLLKLMDEMVEQSCEPNQITMEILMERL--SGSDELV 739
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Query: 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL 154
L+ L ++RR ++ A++V + KE + DL Y+ +I + E+ ++
Sbjct: 517 LISGLCQVRRDHD---AIRVVEKL-KEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDM 572
Query: 155 KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213
+KEG PD+ Y +I + + + E M+ G P T+ +I + GE
Sbjct: 573 EKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGE 631
Score = 34.3 bits (77), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 95/209 (45%), Gaps = 37/209 (17%)
Query: 53 MWRSRVLSSEAIQAV----HAMKLAKSSSKLEEGFQSRICRLLKADL-LDTLTELRRQNE 107
+W+ R+L+ E I A+ + ++ +S L F S +C+ +A+ D L++L + N+
Sbjct: 232 VWKERLLTEEKIIALISRFSSHGVSPNSVWLTR-FISSLCKNARANTAWDILSDLMK-NK 289
Query: 108 LDLALKVFNFV-------------------RKEVWYKPDLSLYSDMILMLGKNKQIAMAE 148
L FN + EV +PD+ +I L K++++ A
Sbjct: 290 TPLEAPPFNALLSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLGILINTLCKSRRVDEAL 349
Query: 149 ELFCELKKEGLD------PDTRVYTEMIGVYLQVGMIDKAMETYETMK-ASGCTPHKLTF 201
E+F +++ + D D+ + +I +VG + +A E MK C P+ +T+
Sbjct: 350 EVFEQMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLVRMKLEERCVPNAVTY 409
Query: 202 TILIRNLENAGE----EELVAAVRRDCIQ 226
LI AG+ +E+V+ ++ D I+
Sbjct: 410 NCLIDGYCRAGKLETAKEVVSRMKEDEIK 438
>sp|Q9ZUE9|PP149_ARATH Pentatricopeptide repeat-containing protein At2g06000
OS=Arabidopsis thaliana GN=At2g06000 PE=2 SV=1
Length = 536
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGL-DPDTRVYTEMIGVYLQVGMIDKAM 183
+PD+ Y+ +I K+ ++ A E+F ++K + PD YT MI Y + G + +A
Sbjct: 238 EPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREAS 297
Query: 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232
+ M G P +TF +L+ AGE +R I + FP+
Sbjct: 298 SLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPD 346
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 35/142 (24%)
Query: 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMI-------------------LMLG----- 139
+ NEL+ A ++F V+ PD+ Y+ MI L LG
Sbjct: 253 KSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTN 312
Query: 140 -----------KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYET 188
K ++ AEE+ ++ G PD +T +I Y +VG + + +E
Sbjct: 313 VTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEE 372
Query: 189 MKASGCTPHKLTFTILIRNLEN 210
M A G P+ T++ILI L N
Sbjct: 373 MNARGMFPNAFTYSILINALCN 394
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P+ YS +I L ++ A EL +L + + P +Y +I + + G +++A
Sbjct: 380 PNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVI 439
Query: 186 YETMKASGCTPHKLTFTILI 205
E M+ C P K+TFTILI
Sbjct: 440 VEEMEKKKCKPDKITFTILI 459
Score = 38.9 bits (89), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%)
Query: 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185
P +Y+ +I K ++ A + E++K+ PD +T +I + G + +A+
Sbjct: 415 PQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSI 474
Query: 186 YETMKASGCTPHKLTFTILIRNLENAG 212
+ M A GC+P K+T + L+ L AG
Sbjct: 475 FHKMVAIGCSPDKITVSSLLSCLLKAG 501
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221
DT+ + +I VG +KA+E M GC P +T+ LI+ + E + +
Sbjct: 205 DTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMF 264
Query: 222 RD 223
+D
Sbjct: 265 KD 266
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,506,522
Number of Sequences: 539616
Number of extensions: 3109237
Number of successful extensions: 10683
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 8784
Number of HSP's gapped (non-prelim): 1842
length of query: 250
length of database: 191,569,459
effective HSP length: 115
effective length of query: 135
effective length of database: 129,513,619
effective search space: 17484338565
effective search space used: 17484338565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)