Query 025612
Match_columns 250
No_of_seqs 206 out of 2826
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 07:37:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025612.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025612hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.7E-32 3.7E-37 256.4 19.0 172 65-237 477-653 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 2.2E-32 4.9E-37 255.6 19.4 208 30-238 579-794 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 8.5E-32 1.8E-36 246.9 14.9 203 28-237 257-466 (697)
4 PLN03081 pentatricopeptide (PP 100.0 1.4E-30 3.1E-35 238.8 13.7 208 22-237 282-498 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 1.8E-29 3.8E-34 236.4 17.1 203 28-237 220-428 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 1.6E-29 3.6E-34 236.7 15.8 207 28-237 321-629 (857)
7 PF13041 PPR_2: PPR repeat fam 99.7 2.1E-16 4.5E-21 95.3 6.5 49 126-174 1-49 (50)
8 PF13041 PPR_2: PPR repeat fam 99.7 3.9E-16 8.5E-21 94.0 6.6 50 161-210 1-50 (50)
9 PRK11788 tetratricopeptide rep 99.4 5.8E-11 1.2E-15 102.1 19.1 162 62-227 143-311 (389)
10 PRK11788 tetratricopeptide rep 99.3 6.3E-10 1.4E-14 95.6 22.4 163 64-228 111-279 (389)
11 KOG4422 Uncharacterized conser 99.3 4.9E-10 1.1E-14 93.6 16.3 173 68-244 123-323 (625)
12 KOG4422 Uncharacterized conser 99.2 3.5E-10 7.7E-15 94.4 13.6 115 97-216 212-330 (625)
13 PF12854 PPR_1: PPR repeat 99.2 2.1E-11 4.6E-16 66.6 4.0 32 158-189 2-33 (34)
14 PF12854 PPR_1: PPR repeat 99.2 3.9E-11 8.4E-16 65.6 4.0 34 122-155 1-34 (34)
15 TIGR02917 PEP_TPR_lipo putativ 99.1 8E-08 1.7E-12 90.3 23.9 155 67-225 540-696 (899)
16 TIGR02917 PEP_TPR_lipo putativ 99.1 1.1E-07 2.3E-12 89.5 24.4 157 66-226 505-663 (899)
17 TIGR02521 type_IV_pilW type IV 99.0 4.7E-07 1E-11 71.2 21.9 161 62-227 33-198 (234)
18 TIGR02521 type_IV_pilW type IV 98.9 2.4E-06 5.1E-11 67.2 23.6 163 63-227 68-232 (234)
19 TIGR00756 PPR pentatricopeptid 98.8 7.9E-09 1.7E-13 56.7 4.1 33 165-197 2-34 (35)
20 PF13429 TPR_15: Tetratricopep 98.8 1.4E-07 3E-12 77.7 12.8 154 71-227 88-243 (280)
21 TIGR00756 PPR pentatricopeptid 98.8 1.8E-08 3.8E-13 55.2 4.4 35 129-163 1-35 (35)
22 PF13812 PPR_3: Pentatricopept 98.7 2.8E-08 6E-13 54.2 4.4 32 165-196 3-34 (34)
23 PF13812 PPR_3: Pentatricopept 98.7 2.3E-08 5.1E-13 54.5 4.0 33 129-161 2-34 (34)
24 PF13429 TPR_15: Tetratricopep 98.6 6.9E-07 1.5E-11 73.5 12.5 156 65-225 115-275 (280)
25 PRK15174 Vi polysaccharide exp 98.6 3.6E-05 7.7E-10 70.9 24.3 153 70-227 187-347 (656)
26 PRK15174 Vi polysaccharide exp 98.6 2.5E-05 5.3E-10 71.9 23.1 157 67-227 83-241 (656)
27 PF08579 RPM2: Mitochondrial r 98.6 1.4E-06 3.1E-11 60.1 10.3 78 97-175 30-116 (120)
28 TIGR00990 3a0801s09 mitochondr 98.6 3.3E-05 7.2E-10 70.7 22.5 154 67-227 338-496 (615)
29 PF10037 MRP-S27: Mitochondria 98.5 1E-06 2.3E-11 75.6 11.3 118 94-211 68-186 (429)
30 PF10037 MRP-S27: Mitochondria 98.5 8.8E-07 1.9E-11 76.1 10.8 119 122-240 60-180 (429)
31 PF08579 RPM2: Mitochondrial r 98.5 3.8E-06 8.2E-11 58.1 11.4 82 130-211 27-117 (120)
32 TIGR03302 OM_YfiO outer membra 98.5 6.4E-05 1.4E-09 60.1 20.7 186 40-228 14-233 (235)
33 PF01535 PPR: PPR repeat; Int 98.5 1.1E-07 2.3E-12 50.6 3.1 27 131-157 3-29 (31)
34 PRK09782 bacteriophage N4 rece 98.5 5.3E-05 1.2E-09 72.3 23.0 150 68-226 550-705 (987)
35 TIGR00990 3a0801s09 mitochondr 98.5 9.8E-05 2.1E-09 67.6 24.0 131 58-191 363-495 (615)
36 PF01535 PPR: PPR repeat; Int 98.5 1.4E-07 3E-12 50.2 3.2 31 164-194 1-31 (31)
37 PRK12370 invasion protein regu 98.5 4.9E-05 1.1E-09 68.6 21.1 147 74-227 318-470 (553)
38 KOG4318 Bicoid mRNA stability 98.5 2E-05 4.3E-10 71.8 17.3 172 57-237 80-275 (1088)
39 PRK09782 bacteriophage N4 rece 98.4 0.00018 3.8E-09 68.8 24.4 156 66-227 515-672 (987)
40 COG3071 HemY Uncharacterized e 98.4 7.1E-05 1.5E-09 62.6 18.3 171 57-231 183-394 (400)
41 PRK10049 pgaA outer membrane p 98.4 0.00011 2.3E-09 69.0 20.6 155 71-226 248-421 (765)
42 PRK12370 invasion protein regu 98.3 0.00016 3.5E-09 65.4 21.0 157 60-226 338-501 (553)
43 PRK11447 cellulose synthase su 98.3 0.00014 2.9E-09 71.4 21.6 160 64-230 577-744 (1157)
44 PF06239 ECSIT: Evolutionarily 98.3 1.6E-05 3.4E-10 61.6 12.0 87 127-213 46-153 (228)
45 PRK14574 hmsH outer membrane p 98.3 0.00023 4.9E-09 66.8 21.9 162 65-227 297-479 (822)
46 KOG1840 Kinesin light chain [C 98.3 0.00014 3.1E-09 64.1 18.6 163 63-225 286-477 (508)
47 PRK10747 putative protoheme IX 98.3 0.00022 4.7E-09 61.8 19.4 79 142-224 308-387 (398)
48 KOG4318 Bicoid mRNA stability 98.3 1.8E-06 3.9E-11 78.3 6.4 94 113-219 11-104 (1088)
49 PRK14574 hmsH outer membrane p 98.2 0.00074 1.6E-08 63.4 23.2 157 67-228 41-199 (822)
50 KOG4626 O-linked N-acetylgluco 98.2 0.00023 4.9E-09 63.1 18.2 179 52-237 312-496 (966)
51 COG2956 Predicted N-acetylgluc 98.2 0.00035 7.6E-09 57.2 17.8 169 67-238 114-291 (389)
52 PF04733 Coatomer_E: Coatomer 98.2 2.8E-05 6E-10 64.2 11.8 150 68-227 110-265 (290)
53 PRK10747 putative protoheme IX 98.2 0.00056 1.2E-08 59.3 20.2 125 101-228 162-293 (398)
54 KOG4626 O-linked N-acetylgluco 98.2 0.0001 2.3E-09 65.1 14.9 164 53-225 245-415 (966)
55 TIGR00540 hemY_coli hemY prote 98.2 0.00068 1.5E-08 59.0 20.3 56 168-223 340-395 (409)
56 PRK10049 pgaA outer membrane p 98.2 0.00064 1.4E-08 63.9 21.4 156 65-226 20-178 (765)
57 PRK11447 cellulose synthase su 98.1 0.0011 2.4E-08 65.1 23.4 50 175-226 473-523 (1157)
58 KOG3081 Vesicle coat complex C 98.1 0.00066 1.4E-08 54.2 17.0 128 100-238 116-248 (299)
59 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00026 5.6E-09 60.7 15.6 121 97-225 174-295 (395)
60 KOG1129 TPR repeat-containing 98.1 0.00011 2.4E-09 60.2 12.4 148 97-250 228-377 (478)
61 PF06239 ECSIT: Evolutionarily 98.0 5.6E-05 1.2E-09 58.6 9.7 87 104-191 64-167 (228)
62 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00032 7E-09 60.2 15.1 119 66-190 175-295 (395)
63 TIGR00540 hemY_coli hemY prote 98.0 0.001 2.2E-08 57.9 18.6 162 66-230 124-295 (409)
64 KOG1070 rRNA processing protei 98.0 0.0016 3.5E-08 62.5 20.4 163 72-239 1509-1677(1710)
65 COG3063 PilF Tfp pilus assembl 98.0 0.0028 6E-08 49.7 18.3 175 60-240 35-216 (250)
66 PRK11189 lipoprotein NlpI; Pro 98.0 0.0076 1.6E-07 50.1 21.8 159 66-229 70-267 (296)
67 PF04733 Coatomer_E: Coatomer 97.9 0.00047 1E-08 57.0 13.5 134 59-197 129-268 (290)
68 PF09976 TPR_21: Tetratricopep 97.9 0.00099 2.1E-08 49.1 14.0 116 104-223 23-143 (145)
69 TIGR02552 LcrH_SycD type III s 97.9 0.00079 1.7E-08 48.7 13.3 95 131-227 20-114 (135)
70 COG5010 TadD Flp pilus assembl 97.9 0.0026 5.6E-08 50.6 16.7 123 98-224 106-228 (257)
71 KOG1840 Kinesin light chain [C 97.9 0.0044 9.5E-08 54.9 19.5 162 65-226 204-395 (508)
72 KOG1129 TPR repeat-containing 97.8 0.00095 2.1E-08 54.9 13.9 165 65-234 228-398 (478)
73 PRK11189 lipoprotein NlpI; Pro 97.8 0.0088 1.9E-07 49.7 20.1 146 74-225 40-192 (296)
74 PF05843 Suf: Suppressor of fo 97.8 0.00067 1.5E-08 55.9 13.3 124 65-191 6-135 (280)
75 TIGR02552 LcrH_SycD type III s 97.8 0.0021 4.5E-08 46.5 14.1 105 97-206 22-126 (135)
76 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.0023 5E-08 44.8 13.9 97 131-227 5-105 (119)
77 COG2956 Predicted N-acetylgluc 97.8 0.0079 1.7E-07 49.5 18.0 161 65-229 74-245 (389)
78 cd05804 StaR_like StaR_like; a 97.8 0.0047 1E-07 52.4 18.0 152 69-226 52-214 (355)
79 cd00189 TPR Tetratricopeptide 97.8 0.0011 2.4E-08 43.4 11.4 93 131-225 3-95 (100)
80 PRK15359 type III secretion sy 97.8 0.0072 1.6E-07 44.5 16.6 90 134-225 30-119 (144)
81 PRK15359 type III secretion sy 97.7 0.0035 7.6E-08 46.2 14.8 101 97-202 29-129 (144)
82 COG3063 PilF Tfp pilus assembl 97.7 0.014 2.9E-07 45.9 19.7 168 56-227 65-236 (250)
83 KOG1126 DNA-binding cell divis 97.7 0.00069 1.5E-08 60.2 11.8 158 59-225 352-550 (638)
84 KOG3081 Vesicle coat complex C 97.7 0.0062 1.3E-07 48.8 15.9 151 67-227 115-271 (299)
85 KOG2003 TPR repeat-containing 97.7 0.0071 1.5E-07 52.0 17.1 152 71-227 535-689 (840)
86 PRK10370 formate-dependent nit 97.7 0.013 2.7E-07 45.7 17.3 151 67-230 23-176 (198)
87 COG3071 HemY Uncharacterized e 97.6 0.019 4.2E-07 48.4 18.9 132 98-232 159-297 (400)
88 PF09976 TPR_21: Tetratricopep 97.6 0.006 1.3E-07 44.9 14.4 119 66-188 18-143 (145)
89 KOG1155 Anaphase-promoting com 97.6 0.016 3.5E-07 49.9 18.3 154 68-225 270-493 (559)
90 PF12569 NARP1: NMDA receptor- 97.6 0.014 3E-07 52.1 19.0 159 78-239 129-303 (517)
91 PRK02603 photosystem I assembl 97.6 0.0096 2.1E-07 45.2 15.8 62 130-191 37-100 (172)
92 PRK15179 Vi polysaccharide bio 97.6 0.015 3.2E-07 53.9 19.5 124 98-227 92-217 (694)
93 COG4783 Putative Zn-dependent 97.6 0.012 2.6E-07 50.9 17.2 122 98-225 312-435 (484)
94 PRK15179 Vi polysaccharide bio 97.5 0.016 3.4E-07 53.7 18.9 139 61-205 86-229 (694)
95 PRK10866 outer membrane biogen 97.5 0.034 7.4E-07 44.8 20.0 161 63-226 35-240 (243)
96 KOG1173 Anaphase-promoting com 97.5 0.0051 1.1E-07 54.0 14.2 193 28-224 310-515 (611)
97 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.013 2.7E-07 41.0 14.4 96 97-192 7-105 (119)
98 PF12895 Apc3: Anaphase-promot 97.5 0.00028 6E-09 46.8 5.2 20 134-153 31-50 (84)
99 PF12895 Apc3: Anaphase-promot 97.5 0.00034 7.4E-09 46.4 5.5 81 141-223 2-83 (84)
100 PF12921 ATP13: Mitochondrial 97.4 0.0031 6.7E-08 45.3 10.2 85 128-212 2-102 (126)
101 cd00189 TPR Tetratricopeptide 97.4 0.0044 9.5E-08 40.4 10.6 91 98-191 6-96 (100)
102 COG5010 TadD Flp pilus assembl 97.4 0.047 1E-06 43.6 18.6 138 98-239 72-209 (257)
103 KOG1126 DNA-binding cell divis 97.4 0.012 2.6E-07 52.6 15.0 155 65-227 426-586 (638)
104 PF05843 Suf: Suppressor of fo 97.4 0.011 2.4E-07 48.7 14.2 128 97-227 6-136 (280)
105 PF03704 BTAD: Bacterial trans 97.3 0.019 4.1E-07 42.2 14.1 76 165-241 64-144 (146)
106 PRK10370 formate-dependent nit 97.3 0.029 6.3E-07 43.7 15.5 128 73-207 52-186 (198)
107 TIGR03302 OM_YfiO outer membra 97.3 0.021 4.5E-07 45.5 15.1 129 97-227 38-195 (235)
108 cd05804 StaR_like StaR_like; a 97.3 0.084 1.8E-06 44.7 20.6 162 67-228 121-294 (355)
109 KOG1915 Cell cycle control pro 97.3 0.025 5.4E-07 49.0 15.7 145 74-225 87-234 (677)
110 KOG2003 TPR repeat-containing 97.3 0.051 1.1E-06 46.9 17.1 140 67-213 565-709 (840)
111 KOG2002 TPR-containing nuclear 97.3 0.0052 1.1E-07 57.1 11.9 153 74-230 626-801 (1018)
112 COG4783 Putative Zn-dependent 97.2 0.044 9.6E-07 47.5 16.7 136 68-227 314-454 (484)
113 KOG1915 Cell cycle control pro 97.2 0.042 9E-07 47.7 16.2 158 64-226 111-272 (677)
114 PLN03088 SGT1, suppressor of 97.2 0.018 4E-07 49.1 14.3 104 100-208 10-113 (356)
115 KOG3616 Selective LIM binding 97.2 0.0044 9.5E-08 56.3 10.6 78 66-153 738-816 (1636)
116 KOG3060 Uncharacterized conser 97.2 0.085 1.8E-06 42.2 17.5 83 106-191 100-182 (289)
117 KOG1155 Anaphase-promoting com 97.2 0.085 1.8E-06 45.7 17.4 119 67-191 371-494 (559)
118 PF03704 BTAD: Bacterial trans 97.1 0.0047 1E-07 45.5 8.9 116 70-201 16-139 (146)
119 CHL00033 ycf3 photosystem I as 97.1 0.024 5.2E-07 42.8 12.9 97 127-224 34-139 (168)
120 KOG3941 Intermediate in Toll s 97.1 0.0059 1.3E-07 49.4 9.5 81 144-224 88-185 (406)
121 PF12921 ATP13: Mitochondrial 97.1 0.0079 1.7E-07 43.2 9.3 57 121-177 45-102 (126)
122 KOG1173 Anaphase-promoting com 97.1 0.023 5E-07 50.1 13.4 141 66-211 386-535 (611)
123 PF12569 NARP1: NMDA receptor- 97.0 0.19 4.1E-06 45.1 19.4 126 98-227 200-334 (517)
124 PF14559 TPR_19: Tetratricopep 97.0 0.0058 1.3E-07 38.4 7.2 62 104-169 3-64 (68)
125 KOG2076 RNA polymerase III tra 97.0 0.11 2.4E-06 48.3 17.3 163 64-229 381-557 (895)
126 KOG1070 rRNA processing protei 97.0 0.13 2.9E-06 50.1 18.3 160 66-226 1536-1699(1710)
127 PLN03088 SGT1, suppressor of 96.9 0.05 1.1E-06 46.5 14.6 92 136-230 10-102 (356)
128 PF14559 TPR_19: Tetratricopep 96.9 0.0053 1.2E-07 38.6 6.5 62 140-204 3-64 (68)
129 KOG0547 Translocase of outer m 96.9 0.048 1E-06 47.5 13.8 120 102-226 438-565 (606)
130 PF12688 TPR_5: Tetratrico pep 96.9 0.084 1.8E-06 37.6 13.7 102 66-174 7-117 (120)
131 PRK02603 photosystem I assembl 96.9 0.12 2.5E-06 39.2 15.8 81 98-181 41-124 (172)
132 CHL00033 ycf3 photosystem I as 96.9 0.042 9.1E-07 41.4 12.1 91 98-189 41-139 (168)
133 KOG1914 mRNA cleavage and poly 96.8 0.2 4.4E-06 44.3 16.9 144 78-226 349-500 (656)
134 KOG2076 RNA polymerase III tra 96.8 0.2 4.4E-06 46.6 17.5 90 67-156 248-344 (895)
135 KOG1914 mRNA cleavage and poly 96.7 0.13 2.7E-06 45.5 15.2 121 108-232 347-469 (656)
136 PRK10803 tol-pal system protei 96.7 0.053 1.1E-06 44.2 12.4 99 128-228 143-247 (263)
137 PF04840 Vps16_C: Vps16, C-ter 96.7 0.031 6.7E-07 46.9 11.1 103 97-220 182-284 (319)
138 KOG2002 TPR-containing nuclear 96.7 0.073 1.6E-06 49.9 14.1 121 107-230 627-748 (1018)
139 KOG2376 Signal recognition par 96.6 0.15 3.2E-06 45.5 15.0 149 61-224 13-201 (652)
140 PRK14720 transcript cleavage f 96.6 0.26 5.6E-06 46.9 17.3 147 62-230 33-201 (906)
141 PF13432 TPR_16: Tetratricopep 96.6 0.015 3.3E-07 36.1 6.7 21 169-189 37-57 (65)
142 PF14938 SNAP: Soluble NSF att 96.6 0.33 7.2E-06 40.0 16.4 179 65-244 40-247 (282)
143 PRK10153 DNA-binding transcrip 96.5 0.21 4.6E-06 44.9 16.0 117 107-228 357-483 (517)
144 PF13170 DUF4003: Protein of u 96.5 0.21 4.5E-06 41.5 14.8 152 77-230 79-254 (297)
145 KOG3941 Intermediate in Toll s 96.5 0.034 7.3E-07 45.2 9.6 87 104-191 84-187 (406)
146 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.08 1.7E-06 46.0 12.1 64 127-192 74-141 (453)
147 KOG3616 Selective LIM binding 96.4 0.038 8.2E-07 50.5 10.2 110 98-221 738-847 (1636)
148 KOG1128 Uncharacterized conser 96.4 0.075 1.6E-06 48.3 12.0 157 66-225 430-614 (777)
149 KOG3785 Uncharacterized conser 96.4 0.085 1.8E-06 44.3 11.4 130 97-232 364-495 (557)
150 PF13432 TPR_16: Tetratricopep 96.3 0.03 6.5E-07 34.8 7.1 57 169-227 3-60 (65)
151 PRK14720 transcript cleavage f 96.3 0.39 8.6E-06 45.7 17.0 171 67-242 90-267 (906)
152 KOG0547 Translocase of outer m 96.3 0.43 9.2E-06 41.9 15.3 149 73-226 339-490 (606)
153 PF12688 TPR_5: Tetratrico pep 96.2 0.22 4.8E-06 35.4 11.7 84 102-188 11-100 (120)
154 KOG3785 Uncharacterized conser 96.2 0.61 1.3E-05 39.4 15.8 169 70-245 369-552 (557)
155 KOG4340 Uncharacterized conser 96.1 0.37 7.9E-06 39.7 13.6 170 72-244 156-357 (459)
156 PF13525 YfiO: Outer membrane 96.1 0.48 1E-05 37.0 17.3 154 62-218 7-198 (203)
157 KOG2053 Mitochondrial inherita 96.1 0.25 5.4E-06 46.1 13.9 109 104-219 21-131 (932)
158 KOG1156 N-terminal acetyltrans 96.1 0.7 1.5E-05 41.8 16.2 128 57-190 368-509 (700)
159 KOG4570 Uncharacterized conser 96.0 0.19 4.2E-06 41.5 11.4 115 122-238 58-175 (418)
160 PF13424 TPR_12: Tetratricopep 96.0 0.02 4.4E-07 37.0 5.0 61 129-189 6-72 (78)
161 PF10300 DUF3808: Protein of u 95.9 0.87 1.9E-05 40.5 16.4 183 58-244 186-400 (468)
162 KOG0985 Vesicle coat protein c 95.9 0.4 8.8E-06 45.7 14.3 86 128-221 1104-1189(1666)
163 PRK10153 DNA-binding transcrip 95.9 0.57 1.2E-05 42.2 15.1 137 60-202 336-490 (517)
164 PF14938 SNAP: Soluble NSF att 95.8 0.73 1.6E-05 37.9 14.9 151 72-224 86-263 (282)
165 PRK15363 pathogenicity island 95.8 0.5 1.1E-05 35.2 12.1 90 98-191 41-131 (157)
166 PRK04841 transcriptional regul 95.8 1.6 3.4E-05 42.1 18.9 157 70-226 462-640 (903)
167 KOG1538 Uncharacterized conser 95.8 0.15 3.3E-06 46.0 10.8 98 127-235 746-854 (1081)
168 PF13424 TPR_12: Tetratricopep 95.7 0.043 9.2E-07 35.4 5.9 64 163-226 5-74 (78)
169 PRK15363 pathogenicity island 95.7 0.58 1.3E-05 34.8 13.0 92 133-227 40-132 (157)
170 KOG2376 Signal recognition par 95.6 0.24 5.3E-06 44.2 11.4 123 95-230 15-142 (652)
171 PF10300 DUF3808: Protein of u 95.6 0.91 2E-05 40.4 15.2 145 92-238 188-346 (468)
172 KOG2053 Mitochondrial inherita 95.5 0.81 1.8E-05 42.9 14.8 157 67-228 16-184 (932)
173 PF13414 TPR_11: TPR repeat; P 95.5 0.12 2.6E-06 32.3 7.2 60 129-189 4-64 (69)
174 KOG1125 TPR repeat-containing 95.5 0.22 4.7E-06 44.2 10.7 112 108-224 410-524 (579)
175 PF13371 TPR_9: Tetratricopept 95.5 0.18 3.9E-06 31.9 8.0 52 138-190 5-56 (73)
176 PF13414 TPR_11: TPR repeat; P 95.4 0.13 2.8E-06 32.2 7.1 63 162-226 2-66 (69)
177 PLN02789 farnesyltranstransfer 95.3 1.5 3.3E-05 36.9 17.1 143 63-211 39-189 (320)
178 PF04053 Coatomer_WDAD: Coatom 95.3 0.65 1.4E-05 40.9 13.2 150 67-234 268-435 (443)
179 smart00299 CLH Clathrin heavy 95.3 0.77 1.7E-05 33.3 13.3 109 97-223 12-121 (140)
180 KOG0495 HAT repeat protein [RN 95.2 2.5 5.5E-05 38.7 18.6 151 67-223 591-778 (913)
181 PRK10803 tol-pal system protei 95.1 0.7 1.5E-05 37.7 12.1 85 103-192 154-246 (263)
182 KOG2047 mRNA splicing factor [ 95.1 2.3 5.1E-05 38.7 15.8 128 97-228 107-278 (835)
183 KOG4340 Uncharacterized conser 95.0 1.3 2.8E-05 36.6 12.9 66 163-230 144-210 (459)
184 PF09205 DUF1955: Domain of un 94.7 1.2 2.5E-05 32.3 13.1 68 162-230 85-152 (161)
185 PF13371 TPR_9: Tetratricopept 94.6 0.23 5E-06 31.4 6.7 59 171-230 3-61 (73)
186 KOG1128 Uncharacterized conser 94.6 0.43 9.3E-06 43.7 10.2 118 104-225 531-653 (777)
187 KOG0553 TPR repeat-containing 94.6 1.2 2.5E-05 36.7 11.7 100 102-208 91-192 (304)
188 COG3629 DnrI DNA-binding trans 94.5 0.85 1.8E-05 37.4 10.9 79 128-207 153-236 (280)
189 KOG3060 Uncharacterized conser 94.4 2.2 4.7E-05 34.4 18.6 149 72-225 24-181 (289)
190 PLN03098 LPA1 LOW PSII ACCUMUL 94.3 0.4 8.6E-06 41.8 9.1 65 161-227 73-141 (453)
191 PF13170 DUF4003: Protein of u 94.3 2.7 5.8E-05 35.0 17.0 135 97-234 62-218 (297)
192 PF13762 MNE1: Mitochondrial s 94.3 1.2 2.5E-05 32.8 10.2 95 121-215 30-132 (145)
193 KOG2047 mRNA splicing factor [ 94.2 4.3 9.4E-05 37.1 16.4 165 71-240 488-662 (835)
194 KOG1125 TPR repeat-containing 94.1 2.6 5.6E-05 37.8 13.7 138 78-220 412-564 (579)
195 PF07079 DUF1347: Protein of u 94.1 3.8 8.3E-05 35.9 14.4 136 71-211 17-180 (549)
196 KOG2796 Uncharacterized conser 93.9 2.9 6.3E-05 34.0 13.5 100 102-205 222-326 (366)
197 PF10602 RPN7: 26S proteasome 93.9 1.4 2.9E-05 33.7 10.5 98 128-225 36-140 (177)
198 KOG0553 TPR repeat-containing 93.8 2.4 5.2E-05 34.9 12.1 87 138-227 91-178 (304)
199 COG5107 RNA14 Pre-mRNA 3'-end 93.6 2.1 4.5E-05 37.5 11.9 123 98-225 403-529 (660)
200 PRK04841 transcriptional regul 93.6 7.3 0.00016 37.6 18.6 160 68-227 581-760 (903)
201 PF04840 Vps16_C: Vps16, C-ter 93.3 0.76 1.6E-05 38.6 8.9 85 129-223 178-262 (319)
202 KOG4570 Uncharacterized conser 93.2 0.81 1.8E-05 38.0 8.6 94 97-192 69-164 (418)
203 KOG0985 Vesicle coat protein c 93.1 4 8.8E-05 39.4 13.7 49 63-111 1136-1185(1666)
204 COG4235 Cytochrome c biogenesi 93.1 4.3 9.4E-05 33.4 12.8 105 125-232 153-261 (287)
205 COG1729 Uncharacterized protei 92.8 2.9 6.3E-05 33.9 11.2 95 63-157 144-244 (262)
206 KOG1127 TPR repeat-containing 92.5 5.6 0.00012 38.3 13.8 81 140-224 574-656 (1238)
207 KOG1156 N-terminal acetyltrans 92.4 8.7 0.00019 35.1 15.6 102 125-229 366-470 (700)
208 COG3629 DnrI DNA-binding trans 92.1 3 6.6E-05 34.2 10.7 81 164-245 154-239 (280)
209 KOG1174 Anaphase-promoting com 91.8 8.2 0.00018 33.6 15.2 144 70-221 206-391 (564)
210 PLN02789 farnesyltranstransfer 91.8 7.1 0.00015 32.9 19.4 123 104-231 49-175 (320)
211 PF13929 mRNA_stabil: mRNA sta 91.7 3.8 8.3E-05 33.7 10.7 127 108-234 144-279 (292)
212 COG4235 Cytochrome c biogenesi 91.7 6.2 0.00014 32.5 11.9 107 97-209 161-271 (287)
213 PF04053 Coatomer_WDAD: Coatom 91.7 2 4.4E-05 37.9 9.8 132 100-242 269-417 (443)
214 PF13176 TPR_7: Tetratricopept 91.7 0.53 1.1E-05 25.4 4.1 23 166-188 2-24 (36)
215 KOG0495 HAT repeat protein [RN 91.2 12 0.00027 34.5 21.1 163 69-235 488-655 (913)
216 KOG1174 Anaphase-promoting com 91.2 9.5 0.00021 33.2 16.3 63 166-230 441-503 (564)
217 PF09205 DUF1955: Domain of un 91.1 4.4 9.6E-05 29.4 9.2 118 71-195 13-152 (161)
218 PF11838 ERAP1_C: ERAP1-like C 90.9 8.3 0.00018 32.1 13.7 149 67-224 136-305 (324)
219 PF00637 Clathrin: Region in C 90.9 0.071 1.5E-06 38.9 0.1 86 97-190 12-97 (143)
220 PF13512 TPR_18: Tetratricopep 90.5 5.4 0.00012 29.2 10.4 80 62-142 12-96 (142)
221 PF13176 TPR_7: Tetratricopept 90.3 0.8 1.7E-05 24.6 4.0 26 130-155 1-26 (36)
222 smart00299 CLH Clathrin heavy 90.2 5.4 0.00012 28.8 15.6 123 65-210 12-137 (140)
223 PF13929 mRNA_stabil: mRNA sta 90.0 5.8 0.00013 32.7 10.2 113 98-210 170-290 (292)
224 PRK15331 chaperone protein Sic 89.9 4.5 9.9E-05 30.4 8.9 91 98-191 43-133 (165)
225 PF04184 ST7: ST7 protein; In 89.7 4.4 9.5E-05 35.9 9.8 77 98-174 265-342 (539)
226 PF10602 RPN7: 26S proteasome 89.6 3.9 8.5E-05 31.2 8.7 64 164-227 37-102 (177)
227 PF07035 Mic1: Colon cancer-as 89.5 7.5 0.00016 29.4 14.7 56 166-225 92-147 (167)
228 PF09613 HrpB1_HrpK: Bacterial 89.5 7.3 0.00016 29.1 11.2 111 98-219 16-130 (160)
229 KOG0543 FKBP-type peptidyl-pro 89.4 13 0.00028 32.0 13.7 96 128-226 257-354 (397)
230 COG3898 Uncharacterized membra 89.4 13 0.00029 32.1 17.9 99 56-157 184-292 (531)
231 COG4700 Uncharacterized protei 89.4 8.5 0.00018 29.8 14.6 157 63-226 59-225 (251)
232 KOG3617 WD40 and TPR repeat-co 89.3 15 0.00032 35.0 13.1 144 72-225 812-994 (1416)
233 PF13374 TPR_10: Tetratricopep 89.2 1.3 2.7E-05 24.2 4.5 26 164-189 3-28 (42)
234 PF08631 SPO22: Meiosis protei 89.2 11 0.00024 30.9 15.5 157 71-230 4-189 (278)
235 COG5107 RNA14 Pre-mRNA 3'-end 89.1 15 0.00033 32.4 13.7 138 66-209 403-546 (660)
236 PF13374 TPR_10: Tetratricopep 88.9 1.3 2.9E-05 24.1 4.4 29 128-156 2-30 (42)
237 KOG2280 Vacuolar assembly/sort 88.8 2.2 4.7E-05 39.5 7.6 105 97-221 689-793 (829)
238 PF13512 TPR_18: Tetratricopep 88.8 7.6 0.00017 28.4 9.4 54 103-156 21-75 (142)
239 KOG1585 Protein required for f 88.7 7.7 0.00017 31.3 9.7 149 72-221 83-250 (308)
240 cd00923 Cyt_c_Oxidase_Va Cytoc 88.7 5.7 0.00012 27.0 8.0 62 143-206 22-84 (103)
241 KOG4555 TPR repeat-containing 88.5 7.6 0.00017 28.2 11.7 90 101-193 52-145 (175)
242 PF00637 Clathrin: Region in C 88.0 0.099 2.1E-06 38.2 -1.0 80 67-154 14-96 (143)
243 PLN03025 replication factor C 87.6 16 0.00034 30.7 13.0 95 145-242 161-268 (319)
244 KOG1127 TPR repeat-containing 87.3 11 0.00023 36.5 11.2 124 97-226 497-624 (1238)
245 KOG0687 26S proteasome regulat 87.2 17 0.00037 30.6 12.2 152 74-227 36-210 (393)
246 PRK15331 chaperone protein Sic 87.1 11 0.00024 28.4 12.1 87 139-227 48-134 (165)
247 COG3947 Response regulator con 87.0 16 0.00035 30.3 16.6 161 78-240 151-360 (361)
248 PF02284 COX5A: Cytochrome c o 86.8 8.1 0.00018 26.6 9.6 47 146-192 28-74 (108)
249 PF13428 TPR_14: Tetratricopep 86.7 2.8 6.1E-05 23.5 4.9 25 167-191 5-29 (44)
250 PF11846 DUF3366: Domain of un 86.5 4.7 0.0001 31.1 7.6 52 175-226 120-172 (193)
251 COG1729 Uncharacterized protei 86.5 16 0.00035 29.7 12.7 99 128-227 142-244 (262)
252 COG4105 ComL DNA uptake lipopr 86.2 16 0.00036 29.5 21.0 165 62-227 36-233 (254)
253 PF04184 ST7: ST7 protein; In 86.1 24 0.00053 31.5 14.8 72 133-205 264-338 (539)
254 PF00515 TPR_1: Tetratricopept 86.1 2.5 5.4E-05 22.0 4.2 26 165-190 3-28 (34)
255 PF13428 TPR_14: Tetratricopep 85.7 2 4.3E-05 24.2 3.9 29 199-227 2-30 (44)
256 KOG0991 Replication factor C, 85.1 18 0.0004 29.1 13.2 101 137-240 168-280 (333)
257 KOG0276 Vesicle coat complex C 84.8 32 0.00069 31.6 12.6 105 98-224 643-747 (794)
258 PF11848 DUF3368: Domain of un 84.7 4.8 0.0001 23.3 5.2 31 175-205 14-44 (48)
259 KOG3617 WD40 and TPR repeat-co 84.6 12 0.00026 35.6 10.0 48 102-156 738-785 (1416)
260 KOG2796 Uncharacterized conser 84.5 21 0.00045 29.3 15.2 127 98-227 183-315 (366)
261 PF08542 Rep_fac_C: Replicatio 84.2 6.9 0.00015 25.8 6.6 29 213-241 19-47 (89)
262 PF11848 DUF3368: Domain of un 84.2 4.8 0.0001 23.4 5.1 33 139-171 13-45 (48)
263 PF11817 Foie-gras_1: Foie gra 83.8 6.6 0.00014 31.7 7.5 59 97-155 183-245 (247)
264 COG4649 Uncharacterized protei 83.8 17 0.00038 27.8 15.6 128 70-198 68-202 (221)
265 PF10475 DUF2450: Protein of u 83.5 18 0.00038 30.0 10.1 109 98-218 104-217 (291)
266 PF09613 HrpB1_HrpK: Bacterial 83.4 17 0.00036 27.3 12.5 110 65-182 15-128 (160)
267 TIGR02561 HrpB1_HrpK type III 82.7 17 0.00037 26.9 10.9 90 104-198 22-112 (153)
268 PRK07764 DNA polymerase III su 82.7 44 0.00096 32.2 13.4 85 108-196 181-280 (824)
269 KOG4162 Predicted calmodulin-b 82.4 44 0.00096 31.4 14.1 123 99-226 657-782 (799)
270 PF11846 DUF3366: Domain of un 82.3 9.6 0.00021 29.3 7.7 60 133-192 113-173 (193)
271 PF11207 DUF2989: Protein of u 82.2 22 0.00047 27.8 12.9 79 139-219 118-199 (203)
272 PF02284 COX5A: Cytochrome c o 81.9 14 0.00031 25.4 10.3 71 166-236 11-84 (108)
273 PRK08691 DNA polymerase III su 81.7 47 0.001 31.3 13.0 94 145-241 181-288 (709)
274 KOG2610 Uncharacterized conser 81.6 32 0.00069 29.3 12.5 147 74-224 117-273 (491)
275 KOG0548 Molecular co-chaperone 81.3 30 0.00065 31.0 10.8 103 100-208 10-114 (539)
276 cd00280 TRFH Telomeric Repeat 80.7 13 0.00029 28.5 7.5 22 98-119 117-138 (200)
277 PF08631 SPO22: Meiosis protei 80.7 30 0.00065 28.4 18.2 157 66-224 90-272 (278)
278 KOG2041 WD40 repeat protein [G 80.6 13 0.00028 34.7 8.5 166 38-222 713-902 (1189)
279 PF02847 MA3: MA3 domain; Int 80.2 7.8 0.00017 26.8 6.0 22 97-118 7-28 (113)
280 PF13525 YfiO: Outer membrane 80.0 26 0.00056 27.2 12.9 129 98-227 11-170 (203)
281 COG0735 Fur Fe2+/Zn2+ uptake r 78.9 10 0.00022 27.9 6.4 61 81-142 7-69 (145)
282 KOG0548 Molecular co-chaperone 78.8 49 0.0011 29.7 16.3 50 138-188 368-417 (539)
283 PRK10564 maltose regulon perip 78.6 4.8 0.0001 33.3 5.0 30 166-195 260-289 (303)
284 PF07575 Nucleopor_Nup85: Nup8 78.3 5.3 0.00012 36.5 5.8 125 97-237 410-534 (566)
285 TIGR03504 FimV_Cterm FimV C-te 78.3 4.7 0.0001 23.0 3.5 24 134-157 5-28 (44)
286 PF00515 TPR_1: Tetratricopept 78.2 7.5 0.00016 20.0 4.4 28 129-156 2-29 (34)
287 KOG2114 Vacuolar assembly/sort 77.9 63 0.0014 30.9 12.2 113 67-190 341-458 (933)
288 COG5187 RPN7 26S proteasome re 77.9 39 0.00085 28.1 10.3 127 98-226 83-220 (412)
289 COG4700 Uncharacterized protei 77.6 31 0.00068 26.8 18.5 92 64-157 93-189 (251)
290 PRK11906 transcriptional regul 77.6 39 0.00086 29.9 10.4 109 108-221 320-430 (458)
291 PF07035 Mic1: Colon cancer-as 77.5 28 0.00062 26.3 14.7 115 112-238 14-130 (167)
292 PF13281 DUF4071: Domain of un 77.5 46 0.001 28.7 11.5 77 133-209 146-228 (374)
293 PRK14956 DNA polymerase III su 77.0 55 0.0012 29.3 13.6 106 110-239 184-289 (484)
294 KOG4555 TPR repeat-containing 76.8 26 0.00057 25.5 9.5 92 137-230 52-147 (175)
295 TIGR02561 HrpB1_HrpK type III 76.7 28 0.00061 25.8 11.2 61 129-193 8-74 (153)
296 TIGR03504 FimV_Cterm FimV C-te 76.6 5.9 0.00013 22.6 3.6 25 169-193 5-29 (44)
297 PF13762 MNE1: Mitochondrial s 76.2 28 0.00061 25.6 10.3 95 87-182 29-133 (145)
298 PF07719 TPR_2: Tetratricopept 76.2 8.6 0.00019 19.6 4.2 21 169-189 7-27 (34)
299 PF10366 Vps39_1: Vacuolar sor 76.0 23 0.00051 24.5 7.5 27 165-191 41-67 (108)
300 PF04124 Dor1: Dor1-like famil 75.9 48 0.001 28.1 11.1 36 97-132 111-146 (338)
301 KOG2280 Vacuolar assembly/sort 75.2 31 0.00068 32.3 9.4 103 113-225 669-771 (829)
302 PF07721 TPR_4: Tetratricopept 74.9 5.2 0.00011 19.6 2.8 19 203-221 6-24 (26)
303 KOG2114 Vacuolar assembly/sort 74.6 55 0.0012 31.3 10.9 149 64-225 287-458 (933)
304 PRK10866 outer membrane biogen 74.1 44 0.00096 26.8 11.4 128 97-227 37-204 (243)
305 PF11207 DUF2989: Protein of u 74.0 40 0.00087 26.3 9.3 73 109-183 123-198 (203)
306 cd00923 Cyt_c_Oxidase_Va Cytoc 73.7 26 0.00056 23.9 9.8 47 179-225 23-69 (103)
307 COG4455 ImpE Protein of avirul 73.4 35 0.00077 27.2 8.2 73 97-172 6-81 (273)
308 KOG0543 FKBP-type peptidyl-pro 73.3 61 0.0013 28.1 12.8 120 68-191 216-354 (397)
309 PRK14951 DNA polymerase III su 73.3 80 0.0017 29.4 13.2 94 145-241 186-293 (618)
310 PF10579 Rapsyn_N: Rapsyn N-te 72.8 16 0.00035 23.8 5.2 46 175-220 18-65 (80)
311 PRK07003 DNA polymerase III su 72.2 94 0.002 29.8 12.6 92 145-239 181-286 (830)
312 TIGR03581 EF_0839 conserved hy 72.1 13 0.00028 29.2 5.5 83 143-225 136-235 (236)
313 COG3118 Thioredoxin domain-con 72.0 57 0.0012 27.1 14.9 51 69-119 143-195 (304)
314 PF13281 DUF4071: Domain of un 71.9 65 0.0014 27.8 18.9 161 65-228 146-335 (374)
315 PF14689 SPOB_a: Sensor_kinase 71.9 13 0.00027 22.9 4.5 20 170-189 30-49 (62)
316 KOG2908 26S proteasome regulat 71.7 62 0.0014 27.5 10.7 87 130-216 77-175 (380)
317 PF10579 Rapsyn_N: Rapsyn N-te 71.1 15 0.00033 23.9 4.8 46 104-149 18-64 (80)
318 KOG2659 LisH motif-containing 71.1 51 0.0011 26.2 12.1 23 169-191 70-92 (228)
319 KOG1550 Extracellular protein 71.1 60 0.0013 29.7 10.5 149 77-230 229-396 (552)
320 COG2178 Predicted RNA-binding 71.0 47 0.001 25.8 10.2 32 210-241 133-170 (204)
321 COG4455 ImpE Protein of avirul 70.7 38 0.00083 27.0 7.8 71 67-137 8-81 (273)
322 PF11838 ERAP1_C: ERAP1-like C 70.3 61 0.0013 26.8 13.1 119 98-221 135-260 (324)
323 PF14689 SPOB_a: Sensor_kinase 69.6 14 0.00031 22.7 4.4 48 178-227 5-52 (62)
324 PRK10564 maltose regulon perip 69.1 12 0.00025 31.1 5.0 45 124-168 252-297 (303)
325 PRK14963 DNA polymerase III su 68.7 91 0.002 28.2 12.9 96 145-243 178-286 (504)
326 PF13431 TPR_17: Tetratricopep 68.2 6.5 0.00014 20.8 2.4 22 127-148 12-33 (34)
327 KOG0403 Neoplastic transformat 67.4 38 0.00081 30.0 7.8 74 132-210 513-586 (645)
328 PF13181 TPR_8: Tetratricopept 67.3 15 0.00033 18.7 4.2 26 165-190 3-28 (34)
329 COG5108 RPO41 Mitochondrial DN 66.0 65 0.0014 30.2 9.3 79 94-175 30-115 (1117)
330 KOG4077 Cytochrome c oxidase, 65.9 48 0.001 23.9 7.2 66 127-192 46-113 (149)
331 PF13174 TPR_6: Tetratricopept 65.8 14 0.00031 18.5 3.5 18 102-119 10-27 (33)
332 PRK11639 zinc uptake transcrip 65.7 54 0.0012 24.7 7.8 62 120-182 18-79 (169)
333 PF10366 Vps39_1: Vacuolar sor 65.2 23 0.00049 24.6 5.2 27 130-156 41-67 (108)
334 KOG0687 26S proteasome regulat 65.1 86 0.0019 26.6 12.8 126 98-225 110-248 (393)
335 KOG4162 Predicted calmodulin-b 64.8 1.3E+02 0.0028 28.5 12.1 106 130-238 652-760 (799)
336 PRK14958 DNA polymerase III su 64.7 1.1E+02 0.0024 27.7 13.2 92 146-240 182-287 (509)
337 KOG0403 Neoplastic transformat 64.7 63 0.0014 28.7 8.6 62 166-230 512-575 (645)
338 PF09454 Vps23_core: Vps23 cor 64.3 20 0.00043 22.4 4.3 49 161-210 6-54 (65)
339 PRK09857 putative transposase; 64.3 83 0.0018 26.1 10.2 67 166-233 209-275 (292)
340 PF13934 ELYS: Nuclear pore co 64.3 29 0.00063 27.6 6.4 121 52-182 68-195 (226)
341 PF09312 SurA_N: SurA N-termin 64.2 36 0.00077 23.9 6.2 56 186-242 57-112 (118)
342 PF07163 Pex26: Pex26 protein; 63.9 84 0.0018 26.0 10.1 88 98-186 89-181 (309)
343 PF11663 Toxin_YhaV: Toxin wit 63.5 6.1 0.00013 28.6 2.1 31 175-207 107-137 (140)
344 KOG1538 Uncharacterized conser 63.5 1.3E+02 0.0029 28.2 13.8 52 67-118 605-658 (1081)
345 PRK11639 zinc uptake transcrip 63.3 37 0.0008 25.6 6.5 59 86-145 17-77 (169)
346 PHA02875 ankyrin repeat protei 63.1 65 0.0014 27.8 9.0 10 208-217 175-184 (413)
347 COG1747 Uncharacterized N-term 62.6 1.2E+02 0.0027 27.5 17.5 163 58-227 64-234 (711)
348 COG3118 Thioredoxin domain-con 62.4 91 0.002 26.0 17.0 123 99-226 141-264 (304)
349 PF06552 TOM20_plant: Plant sp 62.2 70 0.0015 24.6 10.0 90 131-228 31-137 (186)
350 COG4649 Uncharacterized protei 61.8 72 0.0016 24.6 15.0 130 102-232 68-201 (221)
351 PF12796 Ank_2: Ankyrin repeat 61.7 23 0.00049 22.9 4.6 10 134-143 29-38 (89)
352 TIGR02508 type_III_yscG type I 61.7 50 0.0011 22.8 7.8 79 107-193 20-98 (115)
353 PRK15180 Vi polysaccharide bio 61.2 1.1E+02 0.0023 27.7 9.4 52 104-157 335-386 (831)
354 PF07079 DUF1347: Protein of u 60.3 1.3E+02 0.0027 26.9 12.1 124 103-230 17-160 (549)
355 PF11768 DUF3312: Protein of u 60.1 74 0.0016 28.9 8.5 122 97-228 413-537 (545)
356 COG3947 Response regulator con 60.0 64 0.0014 27.0 7.5 72 130-202 281-357 (361)
357 PF13934 ELYS: Nuclear pore co 59.2 90 0.0019 24.8 12.1 110 88-209 72-183 (226)
358 PRK14952 DNA polymerase III su 59.1 1.5E+02 0.0033 27.4 12.7 81 157-240 193-287 (584)
359 KOG4567 GTPase-activating prot 58.7 69 0.0015 26.9 7.5 58 148-210 263-320 (370)
360 PF02259 FAT: FAT domain; Int 58.1 1.1E+02 0.0024 25.5 14.3 66 161-226 144-212 (352)
361 PF07163 Pex26: Pex26 protein; 57.7 1.1E+02 0.0024 25.4 10.3 84 67-151 90-181 (309)
362 PF02607 B12-binding_2: B12 bi 57.4 23 0.00049 22.6 4.0 38 175-212 13-50 (79)
363 PF08311 Mad3_BUB1_I: Mad3/BUB 57.1 68 0.0015 22.8 7.7 42 146-187 81-123 (126)
364 PF11817 Foie-gras_1: Foie gra 56.7 1E+02 0.0022 24.7 8.5 58 168-225 183-245 (247)
365 PF02847 MA3: MA3 domain; Int 56.3 35 0.00076 23.4 5.0 24 132-155 6-29 (113)
366 PF07064 RIC1: RIC1; InterPro 56.2 1.1E+02 0.0024 24.9 10.9 89 93-191 154-248 (258)
367 PF11663 Toxin_YhaV: Toxin wit 56.0 13 0.00028 27.0 2.7 30 73-102 108-138 (140)
368 PF10475 DUF2450: Protein of u 55.7 1.2E+02 0.0026 25.1 12.4 114 62-184 100-218 (291)
369 PF05944 Phage_term_smal: Phag 55.7 35 0.00077 24.6 4.9 23 172-194 57-79 (132)
370 KOG0550 Molecular chaperone (D 55.2 1.5E+02 0.0032 26.1 12.7 154 67-227 176-350 (486)
371 PF10345 Cohesin_load: Cohesin 54.8 1.8E+02 0.0039 27.0 18.0 161 65-226 64-253 (608)
372 PRK14960 DNA polymerase III su 54.6 1.9E+02 0.0042 27.3 12.5 92 145-239 180-285 (702)
373 PF14669 Asp_Glu_race_2: Putat 54.5 48 0.001 25.8 5.6 57 167-223 136-206 (233)
374 KOG4648 Uncharacterized conser 54.3 1.4E+02 0.0031 25.6 9.1 93 100-198 105-198 (536)
375 PF09868 DUF2095: Uncharacteri 54.2 46 0.001 23.3 5.0 34 205-238 68-101 (128)
376 PRK09462 fur ferric uptake reg 54.2 67 0.0014 23.5 6.4 58 86-144 8-68 (148)
377 PRK06305 DNA polymerase III su 53.8 1.6E+02 0.0035 26.2 12.6 29 210-238 259-287 (451)
378 smart00544 MA3 Domain in DAP-5 53.8 70 0.0015 21.9 10.4 22 97-118 7-28 (113)
379 COG4003 Uncharacterized protei 53.6 58 0.0013 21.4 5.1 25 169-193 37-61 (98)
380 PRK14961 DNA polymerase III su 53.5 1.4E+02 0.0031 25.5 12.5 94 145-241 181-288 (363)
381 PF01475 FUR: Ferric uptake re 53.4 21 0.00046 25.0 3.5 45 97-142 12-56 (120)
382 PF09454 Vps23_core: Vps23 cor 53.3 32 0.00069 21.4 3.9 50 125-175 5-54 (65)
383 PRK06645 DNA polymerase III su 52.9 1.8E+02 0.0039 26.4 12.8 90 145-237 190-296 (507)
384 cd07153 Fur_like Ferric uptake 52.6 47 0.001 22.9 5.2 48 134-181 6-53 (116)
385 PF08870 DUF1832: Domain of un 52.3 55 0.0012 22.9 5.3 35 177-212 62-96 (113)
386 COG5108 RPO41 Mitochondrial DN 50.8 1.6E+02 0.0035 27.7 9.2 94 63-156 31-131 (1117)
387 KOG1550 Extracellular protein 50.5 2E+02 0.0044 26.3 16.4 156 70-230 259-429 (552)
388 PRK09857 putative transposase; 49.6 1.5E+02 0.0033 24.6 9.0 66 131-197 209-274 (292)
389 cd00280 TRFH Telomeric Repeat 49.4 1.2E+02 0.0026 23.4 8.1 40 170-212 118-157 (200)
390 COG4003 Uncharacterized protei 49.2 46 0.001 21.8 4.1 24 97-120 36-59 (98)
391 KOG4648 Uncharacterized conser 49.1 1.4E+02 0.003 25.7 8.0 78 137-224 106-184 (536)
392 COG2976 Uncharacterized protei 48.7 1.3E+02 0.0028 23.5 10.0 91 97-193 94-189 (207)
393 PRK09462 fur ferric uptake reg 48.7 1E+02 0.0023 22.4 7.6 59 121-180 10-69 (148)
394 PRK08691 DNA polymerase III su 48.3 2.5E+02 0.0054 26.7 12.5 87 109-198 181-280 (709)
395 COG5159 RPN6 26S proteasome re 48.2 1.6E+02 0.0036 24.6 11.1 139 62-200 5-166 (421)
396 PF14853 Fis1_TPR_C: Fis1 C-te 48.2 57 0.0012 19.3 5.2 33 171-205 9-41 (53)
397 PF01475 FUR: Ferric uptake re 48.0 46 0.001 23.2 4.6 45 168-212 12-56 (120)
398 KOG0550 Molecular chaperone (D 47.9 2E+02 0.0043 25.4 10.1 117 102-224 179-313 (486)
399 PF02184 HAT: HAT (Half-A-TPR) 47.8 30 0.00064 18.2 2.6 23 178-202 2-24 (32)
400 TIGR03184 DNA_S_dndE DNA sulfu 47.7 59 0.0013 22.5 4.8 36 177-212 61-98 (105)
401 KOG2610 Uncharacterized conser 47.6 1.8E+02 0.004 25.0 10.9 118 103-224 114-235 (491)
402 PRK07003 DNA polymerase III su 47.2 2.7E+02 0.0059 26.9 13.2 87 108-197 180-279 (830)
403 smart00028 TPR Tetratricopepti 47.1 32 0.00068 16.0 3.5 25 166-190 4-28 (34)
404 cd08780 Death_TRADD Death Doma 47.0 85 0.0018 20.9 5.2 56 93-151 33-88 (90)
405 COG0457 NrfG FOG: TPR repeat [ 47.0 1.1E+02 0.0024 22.3 20.1 89 137-225 139-229 (291)
406 PF14669 Asp_Glu_race_2: Putat 46.7 73 0.0016 24.9 5.6 56 97-152 137-205 (233)
407 KOG1920 IkappaB kinase complex 46.5 3.3E+02 0.0071 27.5 11.2 81 97-187 970-1050(1265)
408 KOG0890 Protein kinase of the 46.4 2.9E+02 0.0062 30.1 11.0 109 67-184 1390-1504(2382)
409 TIGR01228 hutU urocanate hydra 46.1 1.8E+02 0.0039 26.2 8.5 166 61-228 211-423 (545)
410 PF12926 MOZART2: Mitotic-spin 46.0 88 0.0019 20.8 8.0 42 184-225 29-70 (88)
411 PRK15180 Vi polysaccharide bio 45.7 2.3E+02 0.0051 25.6 10.0 118 103-225 300-418 (831)
412 PF03745 DUF309: Domain of unk 44.9 73 0.0016 19.5 5.4 48 102-150 9-61 (62)
413 PF12862 Apc5: Anaphase-promot 44.8 91 0.002 20.7 6.9 19 207-225 50-68 (94)
414 smart00804 TAP_C C-terminal do 44.7 20 0.00044 22.2 2.0 26 104-129 37-62 (63)
415 PRK14958 DNA polymerase III su 44.4 2.5E+02 0.0053 25.5 12.6 88 109-199 181-281 (509)
416 PRK14951 DNA polymerase III su 44.4 2.7E+02 0.0059 26.0 12.9 87 109-198 186-285 (618)
417 cd07153 Fur_like Ferric uptake 44.1 65 0.0014 22.2 4.8 48 97-145 5-52 (116)
418 COG2976 Uncharacterized protei 43.8 1.6E+02 0.0034 23.1 10.5 89 135-228 96-189 (207)
419 PHA02798 ankyrin-like protein; 42.9 1.2E+02 0.0025 27.1 7.4 148 81-232 52-213 (489)
420 KOG2536 MAM33, mitochondrial m 42.7 80 0.0017 25.6 5.5 22 89-110 228-249 (263)
421 PF09868 DUF2095: Uncharacteri 42.6 1.2E+02 0.0026 21.4 5.8 24 170-193 68-91 (128)
422 PRK09111 DNA polymerase III su 42.4 2.9E+02 0.0062 25.7 12.4 27 212-238 272-298 (598)
423 PF11768 DUF3312: Protein of u 42.3 2.7E+02 0.0059 25.4 10.9 90 65-156 413-506 (545)
424 COG3898 Uncharacterized membra 42.1 2.4E+02 0.0052 24.8 17.0 153 73-233 133-298 (531)
425 KOG2063 Vacuolar assembly/sort 41.4 2.9E+02 0.0063 27.0 9.8 112 97-210 509-638 (877)
426 smart00164 TBC Domain in Tre-2 41.2 1E+02 0.0022 23.5 6.0 45 184-228 152-197 (199)
427 PF07443 HARP: HepA-related pr 41.1 9.9 0.00021 22.8 0.2 34 142-175 6-39 (55)
428 PRK14963 DNA polymerase III su 41.0 2.8E+02 0.006 25.2 11.8 87 108-197 177-275 (504)
429 PRK14953 DNA polymerase III su 40.9 2.7E+02 0.0059 25.1 13.3 86 109-197 181-279 (486)
430 COG0735 Fur Fe2+/Zn2+ uptake r 40.7 1.4E+02 0.0031 21.8 7.6 31 170-200 27-57 (145)
431 KOG3109 Haloacid dehalogenase- 40.6 1.8E+02 0.0039 23.2 7.0 60 165-224 66-135 (244)
432 cd08819 CARD_MDA5_2 Caspase ac 40.2 1.1E+02 0.0024 20.4 6.8 67 147-219 21-87 (88)
433 TIGR02397 dnaX_nterm DNA polym 40.2 2.2E+02 0.0049 23.9 13.0 82 112-196 182-276 (355)
434 PF14840 DNA_pol3_delt_C: Proc 40.2 54 0.0012 23.4 3.9 25 176-200 10-34 (125)
435 KOG1166 Mitotic checkpoint ser 40.0 1.4E+02 0.0031 29.4 7.6 56 141-196 91-147 (974)
436 smart00164 TBC Domain in Tre-2 39.9 1.1E+02 0.0024 23.3 6.0 83 107-193 108-197 (199)
437 PF05664 DUF810: Protein of un 39.6 2E+02 0.0043 27.2 8.3 67 158-224 212-289 (677)
438 PRK12402 replication factor C 39.4 2.2E+02 0.0048 23.6 13.3 85 110-197 188-286 (337)
439 PF08311 Mad3_BUB1_I: Mad3/BUB 39.1 1.4E+02 0.003 21.2 9.0 43 181-223 81-124 (126)
440 KOG0624 dsRNA-activated protei 38.9 2.6E+02 0.0056 24.2 18.4 173 64-244 42-235 (504)
441 KOG0276 Vesicle coat complex C 38.5 3.4E+02 0.0073 25.4 10.2 102 68-188 645-746 (794)
442 COG5210 GTPase-activating prot 37.9 1.1E+02 0.0024 27.6 6.4 45 185-229 364-408 (496)
443 KOG1130 Predicted G-alpha GTPa 37.3 61 0.0013 28.5 4.3 61 127-187 14-79 (639)
444 PF11123 DNA_Packaging_2: DNA 37.3 1.1E+02 0.0025 19.6 4.9 33 107-141 12-44 (82)
445 COG0457 NrfG FOG: TPR repeat [ 37.1 1.6E+02 0.0036 21.4 20.4 154 70-226 105-264 (291)
446 PRK14962 DNA polymerase III su 37.0 3.1E+02 0.0068 24.6 15.2 119 109-230 179-316 (472)
447 PRK14950 DNA polymerase III su 36.5 3.5E+02 0.0076 25.0 12.2 26 212-237 260-285 (585)
448 KOG0275 Conserved WD40 repeat- 36.1 2.6E+02 0.0057 23.7 7.6 85 62-153 9-99 (508)
449 KOG0989 Replication factor C, 35.9 2.7E+02 0.0059 23.6 12.9 50 111-162 193-242 (346)
450 KOG1130 Predicted G-alpha GTPa 35.6 3.2E+02 0.0069 24.3 8.6 128 98-225 201-342 (639)
451 KOG2063 Vacuolar assembly/sort 35.2 3.5E+02 0.0076 26.5 9.3 113 63-176 507-639 (877)
452 PRK14970 DNA polymerase III su 35.0 2.9E+02 0.0062 23.6 11.8 72 121-196 182-267 (367)
453 PF12862 Apc5: Anaphase-promot 34.8 1.4E+02 0.003 19.8 6.3 16 139-154 52-67 (94)
454 KOG2908 26S proteasome regulat 34.7 3E+02 0.0064 23.6 11.7 78 98-175 81-168 (380)
455 PF09670 Cas_Cas02710: CRISPR- 34.5 2.4E+02 0.0051 24.5 7.7 56 135-191 138-197 (379)
456 COG2405 Predicted nucleic acid 34.2 1E+02 0.0023 22.6 4.5 32 175-206 121-152 (157)
457 PLN03025 replication factor C 34.2 2.8E+02 0.006 23.2 15.0 96 109-208 161-268 (319)
458 PRK14971 DNA polymerase III su 34.1 3.9E+02 0.0086 24.9 12.2 81 156-239 195-288 (614)
459 PF14518 Haem_oxygenas_2: Iron 33.0 1.5E+02 0.0033 19.9 6.0 14 164-177 79-92 (106)
460 cd08780 Death_TRADD Death Doma 32.9 1.5E+02 0.0033 19.8 5.5 59 57-115 28-88 (90)
461 PF02607 B12-binding_2: B12 bi 32.9 75 0.0016 20.1 3.5 39 140-178 13-51 (79)
462 KOG1920 IkappaB kinase complex 32.5 5.5E+02 0.012 26.1 14.1 112 66-190 857-992 (1265)
463 PF12169 DNA_pol3_gamma3: DNA 32.5 1.8E+02 0.0038 20.8 5.8 22 175-196 26-47 (143)
464 KOG4077 Cytochrome c oxidase, 32.4 2E+02 0.0042 20.9 9.5 45 181-225 67-111 (149)
465 PF02841 GBP_C: Guanylate-bind 32.3 2.6E+02 0.0057 23.1 7.4 63 122-188 23-87 (297)
466 PF08673 RsbU_N: Phosphoserine 31.9 1.4E+02 0.0029 19.3 4.4 36 200-235 3-41 (77)
467 PRK14965 DNA polymerase III su 31.6 4.2E+02 0.0091 24.5 12.5 81 156-239 193-286 (576)
468 TIGR02508 type_III_yscG type I 31.4 1.8E+02 0.0039 20.2 8.9 90 143-239 20-110 (115)
469 PF10155 DUF2363: Uncharacteri 31.4 2E+02 0.0043 20.6 10.2 23 97-119 23-45 (126)
470 PF14649 Spatacsin_C: Spatacsi 31.2 2.6E+02 0.0057 23.3 7.1 123 111-243 4-131 (296)
471 PRK07452 DNA polymerase III su 31.2 3.1E+02 0.0067 22.8 10.9 74 120-197 144-233 (326)
472 PF08542 Rep_fac_C: Replicatio 30.8 1.5E+02 0.0033 19.1 5.7 20 74-93 18-37 (89)
473 KOG3036 Protein involved in ce 30.7 3E+02 0.0065 22.5 8.8 67 138-206 206-273 (293)
474 COG2405 Predicted nucleic acid 30.7 1.1E+02 0.0025 22.4 4.2 43 129-172 111-153 (157)
475 cd08315 Death_TRAILR_DR4_DR5 D 30.7 1.7E+02 0.0037 19.7 7.0 48 108-158 47-94 (96)
476 COG5210 GTPase-activating prot 30.7 4E+02 0.0087 24.0 11.5 47 148-194 362-408 (496)
477 TIGR03236 dnd_assoc_1 dnd syst 30.1 1.4E+02 0.0031 25.6 5.3 53 56-108 291-347 (363)
478 PRK14970 DNA polymerase III su 30.0 3.5E+02 0.0075 23.0 12.3 55 105-161 200-267 (367)
479 KOG2422 Uncharacterized conser 29.9 4.6E+02 0.0099 24.4 9.6 55 171-225 350-405 (665)
480 PRK05563 DNA polymerase III su 29.7 4.5E+02 0.0097 24.2 13.0 84 110-196 182-278 (559)
481 PF14744 WASH-7_mid: WASH comp 29.6 1.3E+02 0.0029 25.6 5.0 49 179-229 282-330 (350)
482 PRK06645 DNA polymerase III su 29.1 4.4E+02 0.0096 23.9 11.8 89 108-199 189-293 (507)
483 PLN03192 Voltage-dependent pot 29.1 3.6E+02 0.0079 26.1 8.6 49 170-222 626-676 (823)
484 PF14840 DNA_pol3_delt_C: Proc 28.8 58 0.0013 23.2 2.5 27 141-167 10-36 (125)
485 PRK13342 recombination factor 28.4 4E+02 0.0087 23.2 16.6 65 131-195 230-302 (413)
486 COG1747 Uncharacterized N-term 28.4 4.7E+02 0.01 24.0 14.8 139 97-243 71-216 (711)
487 KOG2058 Ypt/Rab GTPase activat 28.1 2.8E+02 0.0061 24.6 7.0 78 152-232 306-390 (436)
488 smart00638 LPD_N Lipoprotein N 27.9 4.7E+02 0.01 23.9 15.0 103 101-209 318-422 (574)
489 PF09477 Type_III_YscG: Bacter 27.9 2.2E+02 0.0047 20.0 8.4 81 105-193 19-99 (116)
490 PRK05896 DNA polymerase III su 27.8 5.1E+02 0.011 24.2 12.7 93 145-240 181-287 (605)
491 COG2812 DnaX DNA polymerase II 27.6 4.8E+02 0.01 23.8 11.6 95 145-242 181-289 (515)
492 PF08771 Rapamycin_bind: Rapam 27.4 1.8E+02 0.0039 19.8 4.7 54 136-191 22-76 (100)
493 smart00544 MA3 Domain in DAP-5 27.4 2E+02 0.0044 19.5 9.0 62 131-194 5-68 (113)
494 TIGR01428 HAD_type_II 2-haloal 27.4 2.7E+02 0.0059 21.0 7.4 92 113-208 63-161 (198)
495 PF10155 DUF2363: Uncharacteri 27.1 2.4E+02 0.0052 20.2 11.2 111 107-225 4-125 (126)
496 KOG3154 Uncharacterized conser 27.0 1.7E+02 0.0038 23.2 4.9 51 67-117 154-205 (263)
497 PHA03100 ankyrin repeat protei 26.7 4E+02 0.0087 23.4 8.1 132 80-222 48-197 (480)
498 cd08819 CARD_MDA5_2 Caspase ac 26.6 2E+02 0.0044 19.2 7.5 64 111-181 21-84 (88)
499 KOG2422 Uncharacterized conser 26.6 5.3E+02 0.011 24.0 13.5 121 56-178 280-430 (665)
500 PRK14971 DNA polymerase III su 26.3 5.4E+02 0.012 24.0 11.9 85 110-197 184-281 (614)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-32 Score=256.39 Aligned_cols=172 Identities=16% Similarity=0.265 Sum_probs=110.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhcCcccHH---HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 025612 65 QAVHAMKLAKSSSKLEEGFQSRICRLLKADLL---DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141 (250)
Q Consensus 65 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~---~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~ 141 (250)
.+|.+|++.|++++|.++|++|.+.|+.||.. ++|.+|++.|++++|.++|++|. +.|+.||..|||+||++|++.
T Consensus 477 sLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~-~~Gv~PD~vTYnsLI~a~~k~ 555 (1060)
T PLN03218 477 TLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR-SKNVKPDRVVFNALISACGQS 555 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHC
Confidence 34666666666666666666666666666555 46666666666666666666665 366666666666666666666
Q ss_pred CCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 025612 142 KQIAMAEELFCELKK--EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAA 219 (250)
Q Consensus 142 ~~~~~A~~~~~~m~~--~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 219 (250)
|++++|.++|++|.. .|+.||.+|||+||.+|++.|++++|.++|++|.+.|+.|+..+|+++|.+|++.|++++|.+
T Consensus 556 G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~ 635 (1060)
T PLN03218 556 GAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALS 635 (1060)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHH
Confidence 666666666666654 456666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhccCCchHHHHH
Q 025612 220 VRRDCIQYVEFPERFLEE 237 (250)
Q Consensus 220 ~~~~m~~~g~~pd~~~~~ 237 (250)
+|++|.+.|+.||..+|.
T Consensus 636 lf~eM~~~Gv~PD~~Tyn 653 (1060)
T PLN03218 636 IYDDMKKKGVKPDEVFFS 653 (1060)
T ss_pred HHHHHHHcCCCCCHHHHH
Confidence 666666666666655554
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.2e-32 Score=255.57 Aligned_cols=208 Identities=17% Similarity=0.148 Sum_probs=158.6
Q ss_pred CCCCCCccceeeeeccccCCCccc---ccc--CCCcHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHH---HHHHH
Q 025612 30 LPSGKKIQALTVTCGLRDANKKPM---WRS--RVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLL---DTLTE 101 (250)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l---~~~--~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~---~ll~~ 101 (250)
...++.++..+..+|..+.+.+.+ ... ......+..++.+|++.|++++|.++|++|.+.|+.||.. ++|++
T Consensus 579 ~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a 658 (1060)
T PLN03218 579 HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV 658 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 345566666666666655444311 111 1122333445888888888888888888888888888765 58888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 025612 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDK 181 (250)
Q Consensus 102 ~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 181 (250)
|++.|++++|.++|++|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..|||+||.+|++.|++++
T Consensus 659 ~~k~G~~eeA~~l~~eM~k-~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~ee 737 (1060)
T PLN03218 659 AGHAGDLDKAFEILQDARK-QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPK 737 (1060)
T ss_pred HHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 8888888888888888864 788888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCchHHHHHH
Q 025612 182 AMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEV 238 (250)
Q Consensus 182 a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ 238 (250)
|.++|++|...|+.||..||+++|.+|++.|+++.|.+++++|.+.|+.||..+|..
T Consensus 738 Alelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tyns 794 (1060)
T PLN03218 738 ALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRC 794 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 888888888888888888888888888888888888888888888888888766653
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.97 E-value=8.5e-32 Score=246.90 Aligned_cols=203 Identities=14% Similarity=0.120 Sum_probs=181.2
Q ss_pred cCCCCCCCccceeeeeccccCCCc---cccccCCCcHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHH---HHHHH
Q 025612 28 ISLPSGKKIQALTVTCGLRDANKK---PMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLL---DTLTE 101 (250)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~---~ll~~ 101 (250)
.+...++.+...+..||..+.+.+ .+......+|+++ +.+|++.|++++|.++|++|.+.|+.||.. +++.+
T Consensus 257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~l--i~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a 334 (697)
T PLN03081 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSM--LAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334 (697)
T ss_pred ccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHH--HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 455667888888889988876665 3444566666665 999999999999999999999999999877 69999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 025612 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDK 181 (250)
Q Consensus 102 ~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 181 (250)
|++.|++++|.+++..|.+ .|+.||..+||+||++|+++|++++|.++|++|.+ ||..|||+||.+|++.|+.++
T Consensus 335 ~~~~g~~~~a~~i~~~m~~-~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~ 409 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIR-TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTK 409 (697)
T ss_pred HHhccchHHHHHHHHHHHH-hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHH
Confidence 9999999999999999975 89999999999999999999999999999999964 799999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-ccCCchHHHHH
Q 025612 182 AMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ-YVEFPERFLEE 237 (250)
Q Consensus 182 a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~-~g~~pd~~~~~ 237 (250)
|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|+.|.+ .|+.|+...|.
T Consensus 410 A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~ 466 (697)
T PLN03081 410 AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA 466 (697)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH
Confidence 999999999999999999999999999999999999999999975 69999876665
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.97 E-value=1.4e-30 Score=238.78 Aligned_cols=208 Identities=13% Similarity=0.173 Sum_probs=185.2
Q ss_pred CCCCCCcCCCCCCCccceeeeeccccCCCccccc----c-CCCcHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHH
Q 025612 22 FHQRPQISLPSGKKIQALTVTCGLRDANKKPMWR----S-RVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLL 96 (250)
Q Consensus 22 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~-~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~ 96 (250)
|+.+++++...|+.+...+...|..+.+...+.. + .+...++..++.+|++.|++++|.+++..|.+.|+.|+..
T Consensus 282 f~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~ 361 (697)
T PLN03081 282 FDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV 361 (697)
T ss_pred HHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCee
Confidence 8888999999999999999888877665542211 1 2233455567999999999999999999999999999876
Q ss_pred ---HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 025612 97 ---DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY 173 (250)
Q Consensus 97 ---~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~ 173 (250)
+||++|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||.+||+++|.+|
T Consensus 362 ~~~~Li~~y~k~G~~~~A~~vf~~m~-----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 362 ANTALVDLYSKWGRMEDARNVFDRMP-----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436 (697)
T ss_pred ehHHHHHHHHHCCCHHHHHHHHHhCC-----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 79999999999999999999995 3799999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCchHHHHH
Q 025612 174 LQVGMIDKAMETYETMKA-SGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEE 237 (250)
Q Consensus 174 ~~~g~~~~a~~~~~~m~~-~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~ 237 (250)
++.|.+++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.+++++| ++.||..++.
T Consensus 437 ~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~ 498 (697)
T PLN03081 437 RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWA 498 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHH
Confidence 999999999999999976 599999999999999999999999999998765 6778876655
No 5
>PLN03077 Protein ECB2; Provisional
Probab=99.97 E-value=1.8e-29 Score=236.44 Aligned_cols=203 Identities=18% Similarity=0.224 Sum_probs=186.7
Q ss_pred cCCCCCCCccceeeeeccccCCCc---cccccCCCcHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHH---HHHHH
Q 025612 28 ISLPSGKKIQALTVTCGLRDANKK---PMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLL---DTLTE 101 (250)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~---~ll~~ 101 (250)
.+...++.+...+..||..+.++. .+...+..+|+++ +.+|++.|++++|+++|++|.+.|+.||.. ++|.+
T Consensus 220 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~l--i~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a 297 (857)
T PLN03077 220 LDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAM--ISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISA 297 (857)
T ss_pred cccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHH--HHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Confidence 455678888888999998876665 4555667777776 999999999999999999999999999987 69999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 025612 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDK 181 (250)
Q Consensus 102 ~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 181 (250)
|++.|+++.|.+++..|.+ .|+.||..+||+||++|++.|++++|.++|++|.. ||.++||+||.+|++.|++++
T Consensus 298 ~~~~g~~~~a~~l~~~~~~-~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~ 372 (857)
T PLN03077 298 CELLGDERLGREMHGYVVK-TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDK 372 (857)
T ss_pred HHhcCChHHHHHHHHHHHH-hCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHH
Confidence 9999999999999999975 89999999999999999999999999999999964 799999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCchHHHHH
Q 025612 182 AMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEE 237 (250)
Q Consensus 182 a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~ 237 (250)
|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++++.|.+.|+.||..+++
T Consensus 373 A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n 428 (857)
T PLN03077 373 ALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVAN 428 (857)
T ss_pred HHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999987766
No 6
>PLN03077 Protein ECB2; Provisional
Probab=99.96 E-value=1.6e-29 Score=236.65 Aligned_cols=207 Identities=17% Similarity=0.198 Sum_probs=148.4
Q ss_pred cCCCCCCCccceeeeeccccCCCc---cccccCCCcHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHH---HHHHH
Q 025612 28 ISLPSGKKIQALTVTCGLRDANKK---PMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLL---DTLTE 101 (250)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~---~ll~~ 101 (250)
.+...++.+...+..||..+.+++ .+......+|+++ +.+|++.|++++|+++|++|.+.|+.|+.. ++|.+
T Consensus 321 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~l--i~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a 398 (857)
T PLN03077 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAM--ISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA 398 (857)
T ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHH--HHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHH
Confidence 344556666666777776665554 3334455556555 777777777777888888777777777655 56677
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC------------------------
Q 025612 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE------------------------ 157 (250)
Q Consensus 102 ~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~------------------------ 157 (250)
|++.|+++.|.++++.|.+ .|+.|+..+||+||++|+++|++++|.++|++|.+.
T Consensus 399 ~~~~g~~~~a~~l~~~~~~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~l 477 (857)
T PLN03077 399 CACLGDLDVGVKLHELAER-KGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIF 477 (857)
T ss_pred HhccchHHHHHHHHHHHHH-hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHH
Confidence 7777777777777776653 666666666666666666666666666666555432
Q ss_pred ------CC-----------------------------------------------------------------CCCHHHH
Q 025612 158 ------GL-----------------------------------------------------------------DPDTRVY 166 (250)
Q Consensus 158 ------g~-----------------------------------------------------------------~p~~~ty 166 (250)
++ .||.+||
T Consensus 478 f~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~ 557 (857)
T PLN03077 478 FRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSW 557 (857)
T ss_pred HHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhH
Confidence 12 3456667
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hccCCchHHHHH
Q 025612 167 TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCI-QYVEFPERFLEE 237 (250)
Q Consensus 167 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~-~~g~~pd~~~~~ 237 (250)
|+||.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|. +.|+.|+..+|.
T Consensus 558 n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~ 629 (857)
T PLN03077 558 NILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA 629 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 78888888888888888888888888888888888888888888888888888888888 678888866665
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.67 E-value=2.1e-16 Score=95.26 Aligned_cols=49 Identities=33% Similarity=0.505 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 025612 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYL 174 (250)
Q Consensus 126 ~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~ 174 (250)
||+.+||++|++|++.|++++|.++|++|.++|+.||..||++||++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.65 E-value=3.9e-16 Score=94.03 Aligned_cols=50 Identities=32% Similarity=0.633 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 025612 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210 (250)
Q Consensus 161 p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~ 210 (250)
||.+|||+||.+|++.|++++|+++|++|.+.|+.||..||++||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999975
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.39 E-value=5.8e-11 Score=102.08 Aligned_cols=162 Identities=12% Similarity=0.003 Sum_probs=109.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhcCcccH---H----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 025612 62 EAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADL---L----DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDM 134 (250)
Q Consensus 62 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~---~----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~l 134 (250)
....+...+.+.|++++|.+.++.+.+.+-.+.. . .+...+.+.|++++|...|+++.+ .. +.+...+..+
T Consensus 143 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~-p~~~~~~~~l 220 (389)
T PRK11788 143 ALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALA-AD-PQCVRASILL 220 (389)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-HC-cCCHHHHHHH
Confidence 4445577777778888888888887765533321 1 355566677788888888777754 21 2235566777
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 025612 135 ILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214 (250)
Q Consensus 135 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 214 (250)
...|.+.|++++|.++|+++.+.+-.....+++.+...|.+.|++++|...++++.+. .|+...+..+...+.+.|++
T Consensus 221 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~ 298 (389)
T PRK11788 221 GDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGP 298 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCH
Confidence 7777777888888887777766432222456777777777778888887777777664 36666667777777777777
Q ss_pred HHHHHHHHHHHhc
Q 025612 215 ELVAAVRRDCIQY 227 (250)
Q Consensus 215 ~~a~~~~~~m~~~ 227 (250)
++|.++++++.+.
T Consensus 299 ~~A~~~l~~~l~~ 311 (389)
T PRK11788 299 EAAQALLREQLRR 311 (389)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777776654
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.34 E-value=6.3e-10 Score=95.64 Aligned_cols=163 Identities=13% Similarity=0.050 Sum_probs=111.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHH
Q 025612 64 IQAVHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPD----LSLYSDMILM 137 (250)
Q Consensus 64 ~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~----~~~y~~li~~ 137 (250)
..+...+.+.|++++|..+|+++.+.... .... .+...+.+.|++++|.+.|+.+.+ .+..+. ...|..+...
T Consensus 111 ~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 111 QELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEK-LGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHH
Confidence 34466777778888888888887653211 1111 577778888888888888888764 322221 2245566677
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 025612 138 LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217 (250)
Q Consensus 138 ~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a 217 (250)
+.+.|++++|...|+++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+-.....+++.+..+|.+.|++++|
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 190 ALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 778888888888888876642 2235567777788888888888888888887653222245677888888888888888
Q ss_pred HHHHHHHHhcc
Q 025612 218 AAVRRDCIQYV 228 (250)
Q Consensus 218 ~~~~~~m~~~g 228 (250)
.+.++.+.+..
T Consensus 269 ~~~l~~~~~~~ 279 (389)
T PRK11788 269 LEFLRRALEEY 279 (389)
T ss_pred HHHHHHHHHhC
Confidence 88888877654
No 11
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=4.9e-10 Score=93.59 Aligned_cols=173 Identities=16% Similarity=0.028 Sum_probs=114.2
Q ss_pred HHHHhcCChhHHHHHHHHHHHhcCcccHH---HHH---HHHHHcCCHHHHHHHHHHHHH------------------hCC
Q 025612 68 HAMKLAKSSSKLEEGFQSRICRLLKADLL---DTL---TELRRQNELDLALKVFNFVRK------------------EVW 123 (250)
Q Consensus 68 ~~~~~~~~~~~a~~l~~~m~~~~~~~~~~---~ll---~~~~~~~~~~~a~~~~~~m~~------------------~~g 123 (250)
--+...|.+..+.-+++.|...|.+.+.. .|+ .-|...+-+-.-++-|-.|.+ ..-
T Consensus 123 ~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~ 202 (625)
T KOG4422|consen 123 LKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFET 202 (625)
T ss_pred HHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhh
Confidence 33456788888888888888877654433 222 222222211111222222321 001
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 025612 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTI 203 (250)
Q Consensus 124 ~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ 203 (250)
.+-+..||.+||.++|+-...+.|.+++++-.....+.+..+||.+|.+-.-. ...++..+|....++||..|||+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHH
Confidence 12356788888888888888888888888888877788888888887653332 22677888888888888888888
Q ss_pred HHHHHHhcCCHHH----HHHHHHHHHhccCCchHHHHHHHHhhhc
Q 025612 204 LIRNLENAGEEEL----VAAVRRDCIQYVEFPERFLEEVYQKHRK 244 (250)
Q Consensus 204 li~~~~~~g~~~~----a~~~~~~m~~~g~~pd~~~~~~~~~~~~ 244 (250)
++++.++.|+++. |.+++.+|++-|+.|.--.|-+..+.++
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~ 323 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFK 323 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhc
Confidence 8888888887654 5677888888888887666665555444
No 12
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=3.5e-10 Score=94.41 Aligned_cols=115 Identities=15% Similarity=0.267 Sum_probs=101.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 176 (250)
++|.++|+--..+.|.+++.+-.. ...+.+..+||.+|.+-+-..+ .+++.+|....++||..|||+++++..+.
T Consensus 212 ~mI~Gl~K~~~~ERA~~L~kE~~~-~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akf 286 (625)
T KOG4422|consen 212 IMIAGLCKFSSLERARELYKEHRA-AKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAKF 286 (625)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH-hhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHHh
Confidence 699999999999999999999975 5668899999999987553332 78999999999999999999999999999
Q ss_pred CChHHH----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 025612 177 GMIDKA----METYETMKASGCTPHKLTFTILIRNLENAGEEEL 216 (250)
Q Consensus 177 g~~~~a----~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 216 (250)
|+++.| .+++.+|++-|+.|...+|..+|..+.+.++..+
T Consensus 287 g~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k 330 (625)
T KOG4422|consen 287 GKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK 330 (625)
T ss_pred cchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchh
Confidence 987764 6678899999999999999999999999988744
No 13
>PF12854 PPR_1: PPR repeat
Probab=99.21 E-value=2.1e-11 Score=66.65 Aligned_cols=32 Identities=34% Similarity=0.729 Sum_probs=14.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 025612 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETM 189 (250)
Q Consensus 158 g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m 189 (250)
|+.||.+|||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44444444444444444444444444444444
No 14
>PF12854 PPR_1: PPR repeat
Probab=99.17 E-value=3.9e-11 Score=65.59 Aligned_cols=34 Identities=32% Similarity=0.355 Sum_probs=32.3
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 025612 122 VWYKPDLSLYSDMILMLGKNKQIAMAEELFCELK 155 (250)
Q Consensus 122 ~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~ 155 (250)
.|+.||..|||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4899999999999999999999999999999984
No 15
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.07 E-value=8e-08 Score=90.32 Aligned_cols=155 Identities=10% Similarity=-0.053 Sum_probs=63.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCc-ccH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLK-ADL-LDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQI 144 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~-~~~-~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~ 144 (250)
...+.+.|+.++|...++++...... ++. ..+...+.+.|++++|..+++.+.+ ..+.+..+|..+..+|.+.|++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 617 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD--AAPDSPEAWLMLGRAQLAAGDL 617 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHcCCH
Confidence 44444445555555555544332211 000 1344444444444444444444432 1122344444444444444444
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 025612 145 AMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDC 224 (250)
Q Consensus 145 ~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m 224 (250)
++|...|+++.+.. +.+...|..+...|.+.|++++|..+|+++.+.. ..+..++..+...+...|++++|.++++.+
T Consensus 618 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 618 NKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444443321 1123334444444444444444444444443321 112333333444444444444444444433
Q ss_pred H
Q 025612 225 I 225 (250)
Q Consensus 225 ~ 225 (250)
.
T Consensus 696 ~ 696 (899)
T TIGR02917 696 Q 696 (899)
T ss_pred H
Confidence 3
No 16
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.06 E-value=1.1e-07 Score=89.48 Aligned_cols=157 Identities=9% Similarity=0.039 Sum_probs=73.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 025612 66 AVHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ 143 (250)
Q Consensus 66 ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~ 143 (250)
+...+...|++++|...++++...... +... .+...+.+.|+.++|..+|+++.+ .+ +.+...+..+...|.+.|+
T Consensus 505 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~ 582 (899)
T TIGR02917 505 LARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAE-LN-PQEIEPALALAQYYLGKGQ 582 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-ccchhHHHHHHHHHHHCCC
Confidence 344444555555555555555432211 0111 344444455555555555555432 11 2234444555555555555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 025612 144 IAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223 (250)
Q Consensus 144 ~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~ 223 (250)
+++|..+++++... .+.+..+|..+...|.+.|++++|...|+.+.+.. ..+...+..+...+.+.|++++|.++++.
T Consensus 583 ~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 660 (899)
T TIGR02917 583 LKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKR 660 (899)
T ss_pred HHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555555555432 23344455555555555555555555555554432 12334444555555555555555555555
Q ss_pred HHh
Q 025612 224 CIQ 226 (250)
Q Consensus 224 m~~ 226 (250)
+.+
T Consensus 661 ~~~ 663 (899)
T TIGR02917 661 ALE 663 (899)
T ss_pred HHh
Confidence 443
No 17
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.98 E-value=4.7e-07 Score=71.25 Aligned_cols=161 Identities=13% Similarity=0.006 Sum_probs=129.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 025612 62 EAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLL----DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILM 137 (250)
Q Consensus 62 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~ 137 (250)
....+...+...|++++|...+++..+.. |+.. .+...+...|++++|.+.|+...+ .. +.+...+..+...
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALT-LN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hC-CCCHHHHHHHHHH
Confidence 44456788888999999999999987543 3222 477788899999999999999865 22 3456778888999
Q ss_pred HHcCCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 025612 138 LGKNKQIAMAEELFCELKKEGL-DPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216 (250)
Q Consensus 138 ~~~~~~~~~A~~~~~~m~~~g~-~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 216 (250)
|...|++++|.+.|++...... ......+..+...|...|++++|...|++..+.. ..+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999877532 2345567778888999999999999999987753 2246788889999999999999
Q ss_pred HHHHHHHHHhc
Q 025612 217 VAAVRRDCIQY 227 (250)
Q Consensus 217 a~~~~~~m~~~ 227 (250)
|.+.+++..+.
T Consensus 188 A~~~~~~~~~~ 198 (234)
T TIGR02521 188 ARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHHh
Confidence 99999998876
No 18
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.92 E-value=2.4e-06 Score=67.21 Aligned_cols=163 Identities=14% Similarity=0.103 Sum_probs=129.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 025612 63 AIQAVHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK 140 (250)
Q Consensus 63 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~ 140 (250)
...+...+...|++++|.+.+++..+..-. +... .+...+...|++++|.+.|+...+..........+..+-..|..
T Consensus 68 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 147 (234)
T TIGR02521 68 YLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK 147 (234)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 334567777889999999999998765432 2222 56777889999999999999987532223345677888889999
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 025612 141 NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220 (250)
Q Consensus 141 ~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~ 220 (250)
.|++++|...|++..... +.+...+..+...+...|++++|...+++..+. ...+...+..+...+...|+.+.|..+
T Consensus 148 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~ 225 (234)
T TIGR02521 148 AGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRY 225 (234)
T ss_pred cCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999987652 234678888999999999999999999998876 345677788888999999999999999
Q ss_pred HHHHHhc
Q 025612 221 RRDCIQY 227 (250)
Q Consensus 221 ~~~m~~~ 227 (250)
.+.+.+.
T Consensus 226 ~~~~~~~ 232 (234)
T TIGR02521 226 GAQLQKL 232 (234)
T ss_pred HHHHHhh
Confidence 8887653
No 19
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.80 E-value=7.9e-09 Score=56.67 Aligned_cols=33 Identities=24% Similarity=0.535 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 025612 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPH 197 (250)
Q Consensus 165 ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 197 (250)
|||+||.+|++.|++++|.++|++|++.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455666666666666666666666655555555
No 20
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.79 E-value=1.4e-07 Score=77.69 Aligned_cols=154 Identities=11% Similarity=0.047 Sum_probs=83.9
Q ss_pred HhcCChhHHHHHHHHHHHhcCcccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 025612 71 KLAKSSSKLEEGFQSRICRLLKADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEE 149 (250)
Q Consensus 71 ~~~~~~~~a~~l~~~m~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~ 149 (250)
...+++++|..++....+..-.|... .++..+.+.++++++.++++...+......+...|..+-..+.+.|+.++|.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 56677777777776654433333333 56677777788888888887765434445667777777777788888888888
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 025612 150 LFCELKKEGLDPD-TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 150 ~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
+|++..+. .|+ ....+.++..+...|+.+++.+++....+.. ..|...+..+-.+|...|+.++|..+++...+.
T Consensus 168 ~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 168 DYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc
Confidence 88777664 453 6667777777777788777777777766543 344556677777777888888888888776653
No 21
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.75 E-value=1.8e-08 Score=55.23 Aligned_cols=35 Identities=34% Similarity=0.513 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH
Q 025612 129 SLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163 (250)
Q Consensus 129 ~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 163 (250)
.+||++|++|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999983
No 22
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.71 E-value=2.8e-08 Score=54.20 Aligned_cols=32 Identities=25% Similarity=0.558 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 025612 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTP 196 (250)
Q Consensus 165 ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 196 (250)
|||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444444
No 23
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.71 E-value=2.3e-08 Score=54.51 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 025612 129 SLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161 (250)
Q Consensus 129 ~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 161 (250)
++||++|++|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 689999999999999999999999999999988
No 24
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.64 E-value=6.9e-07 Score=73.53 Aligned_cols=156 Identities=18% Similarity=0.172 Sum_probs=106.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhcCcc-cHH---HHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 025612 65 QAVHAMKLAKSSSKLEEGFQSRICRLLKA-DLL---DTLTELRRQNELDLALKVFNFVRKEVWYKP-DLSLYSDMILMLG 139 (250)
Q Consensus 65 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~~-~~~---~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~-~~~~y~~li~~~~ 139 (250)
..+..+...++++++.++++......-.+ +.. .+-..+.+.|+.++|..++++..+. .| |....+.++..+.
T Consensus 115 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li 191 (280)
T PF13429_consen 115 SALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLI 191 (280)
T ss_dssp ---H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHH
Confidence 35777888999999999999987533222 222 4556677899999999999998763 45 4778999999999
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 025612 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAA 219 (250)
Q Consensus 140 ~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 219 (250)
..|+.+++.+++....... +.|...|..+..+|...|+.++|+..|++..... +.|+.....+..++...|+.++|.+
T Consensus 192 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 192 DMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp TTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------
T ss_pred HCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccc
Confidence 9999999999998887653 4566778899999999999999999999987742 3378888999999999999999999
Q ss_pred HHHHHH
Q 025612 220 VRRDCI 225 (250)
Q Consensus 220 ~~~~m~ 225 (250)
+.+..-
T Consensus 270 ~~~~~~ 275 (280)
T PF13429_consen 270 LRRQAL 275 (280)
T ss_dssp ------
T ss_pred cccccc
Confidence 887653
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.62 E-value=3.6e-05 Score=70.88 Aligned_cols=153 Identities=10% Similarity=0.005 Sum_probs=89.4
Q ss_pred HHhcCChhHHHHHHHHHHHhcCcccHH---HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 025612 70 MKLAKSSSKLEEGFQSRICRLLKADLL---DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAM 146 (250)
Q Consensus 70 ~~~~~~~~~a~~l~~~m~~~~~~~~~~---~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~ 146 (250)
+...|++++|..+++.+.+..-.++.. .+..++.+.|++++|...|+...+ .. +.+...+..+-..|...|++++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~-~~-p~~~~~~~~Lg~~l~~~G~~~e 264 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA-RG-LDGAALRRSLGLAYYQSGRSRE 264 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh-cC-CCCHHHHHHHHHHHHHcCCchh
Confidence 444455555555555544332111111 233455566666666666666653 21 2245556666666666776664
Q ss_pred ----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 025612 147 ----AEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH-KLTFTILIRNLENAGEEELVAAVR 221 (250)
Q Consensus 147 ----A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~~~ 221 (250)
|...|++..... +-+...+..+...+.+.|++++|...+++..+. .|+ ...+..+-.++.+.|++++|.+.+
T Consensus 265 A~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l 341 (656)
T PRK15174 265 AKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEF 341 (656)
T ss_pred hHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 566666665531 224556677777777777777777777776654 243 445666667777777777777777
Q ss_pred HHHHhc
Q 025612 222 RDCIQY 227 (250)
Q Consensus 222 ~~m~~~ 227 (250)
+.+.+.
T Consensus 342 ~~al~~ 347 (656)
T PRK15174 342 VQLARE 347 (656)
T ss_pred HHHHHh
Confidence 776654
No 26
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.61 E-value=2.5e-05 Score=71.93 Aligned_cols=157 Identities=6% Similarity=-0.021 Sum_probs=87.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcC-cccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLL-KADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQI 144 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~-~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~ 144 (250)
..+....|+++.|...++++....- .++.. .+-..+...|++++|...++...+. -+.+...+..+...|...|++
T Consensus 83 ~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~ 160 (656)
T PRK15174 83 VISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKE 160 (656)
T ss_pred hhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCh
Confidence 4444455666666666666653221 11111 3455556667777777777766531 122355666666677777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 025612 145 AMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDC 224 (250)
Q Consensus 145 ~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m 224 (250)
++|...++.+....-. +...+..+ ..+...|++++|..+++.+.+..-.++...+..+..++.+.|++++|.+.++..
T Consensus 161 ~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~a 238 (656)
T PRK15174 161 LQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESA 238 (656)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777777666543211 12222222 235666777777777776655432233444445556666777777777777776
Q ss_pred Hhc
Q 025612 225 IQY 227 (250)
Q Consensus 225 ~~~ 227 (250)
.+.
T Consensus 239 l~~ 241 (656)
T PRK15174 239 LAR 241 (656)
T ss_pred Hhc
Confidence 654
No 27
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.57 E-value=1.4e-06 Score=60.09 Aligned_cols=78 Identities=13% Similarity=0.349 Sum_probs=53.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHcCCC--------HHHHHHHHHHHHhCCCCCCHHHHH
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWY-KPDLSLYSDMILMLGKNKQ--------IAMAEELFCELKKEGLDPDTRVYT 167 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~-~~~~~~y~~li~~~~~~~~--------~~~A~~~~~~m~~~g~~p~~~ty~ 167 (250)
.-|..|...+++.....+|+.++ +.|+ .|++.+||.++.+.++..- +-.++.+|+.|...+++|+..|||
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslk-RN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLK-RNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHH-hcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 35666666677888888888775 4777 7788888888877765432 334556667777667777777777
Q ss_pred HHHHHHHh
Q 025612 168 EMIGVYLQ 175 (250)
Q Consensus 168 ~li~~~~~ 175 (250)
.+|..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 77766654
No 28
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.56 E-value=3.3e-05 Score=70.68 Aligned_cols=154 Identities=12% Similarity=-0.020 Sum_probs=124.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCcccHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLKADLL----DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNK 142 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~ 142 (250)
-..+...|++++|...+++..+. .|+.. .+-..+...|++++|...|+...+. . +-+...|..+-..|...|
T Consensus 338 g~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~-p~~~~~~~~lg~~~~~~g 413 (615)
T TIGR00990 338 GTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-N-SEDPDIYYHRAQLHFIKG 413 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHcC
Confidence 44555679999999999998754 34322 4666778899999999999998752 2 335788999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 025612 143 QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP-HKLTFTILIRNLENAGEEELVAAVR 221 (250)
Q Consensus 143 ~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~~ 221 (250)
++++|...|++..+.. +.+...|..+...+.+.|++++|+..|++..+. .| +...|+.+-..+...|++++|.+.|
T Consensus 414 ~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~ 490 (615)
T TIGR00990 414 EFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKF 490 (615)
T ss_pred CHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999999999987742 235677888888999999999999999998764 34 4678889999999999999999999
Q ss_pred HHHHhc
Q 025612 222 RDCIQY 227 (250)
Q Consensus 222 ~~m~~~ 227 (250)
+...+.
T Consensus 491 ~~Al~l 496 (615)
T TIGR00990 491 DTAIEL 496 (615)
T ss_pred HHHHhc
Confidence 997654
No 29
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.54 E-value=1e-06 Score=75.63 Aligned_cols=118 Identities=14% Similarity=0.039 Sum_probs=99.4
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 025612 94 DLLDTLTELRRQNELDLALKVFNFVRKEVW-YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGV 172 (250)
Q Consensus 94 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g-~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~ 172 (250)
|+..+++.+....+++.+..++...+.+.. ...-..|..++|+.|.+.|..+.++.+++.=...|+-||.+|||.||..
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~ 147 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH 147 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence 334788888888899999999999875322 1122345679999999999999999999988888999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 025612 173 YLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211 (250)
Q Consensus 173 ~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 211 (250)
+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 148 fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 148 FLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999998887778889988888888876
No 30
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.54 E-value=8.8e-07 Score=76.07 Aligned_cols=119 Identities=12% Similarity=0.137 Sum_probs=102.5
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 025612 122 VWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE--GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199 (250)
Q Consensus 122 ~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 199 (250)
.+...+......+++.+....+++.+.+++...... ....-..|..++|+.|.+.|..++++++++.=...|+-||.+
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 445668889999999999999999999999998775 333444566799999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCchHHHHHHHH
Q 025612 200 TFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVYQ 240 (250)
Q Consensus 200 ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~~~ 240 (250)
|||.||+.+.+.|++..|.++..+|...+...+..++.+.-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l 180 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALAL 180 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHH
Confidence 99999999999999999999999999887776666666543
No 31
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.52 E-value=3.8e-06 Score=58.07 Aligned_cols=82 Identities=17% Similarity=0.325 Sum_probs=70.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHCCCCCCHHH
Q 025612 130 LYSDMILMLGKNKQIAMAEELFCELKKEGL-DPDTRVYTEMIGVYLQVG--------MIDKAMETYETMKASGCTPHKLT 200 (250)
Q Consensus 130 ~y~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~ty~~li~~~~~~g--------~~~~a~~~~~~m~~~g~~p~~~t 200 (250)
|-..-|..+...+++.....+|+.++..|+ .|+..+||.++.+-+++. ++-+++.+|++|...+++|+..|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 335566667777999999999999999999 999999999999988854 24467889999999999999999
Q ss_pred HHHHHHHHHhc
Q 025612 201 FTILIRNLENA 211 (250)
Q Consensus 201 y~~li~~~~~~ 211 (250)
|++++..+.+.
T Consensus 107 Ynivl~~Llkg 117 (120)
T PF08579_consen 107 YNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHh
Confidence 99999988753
No 32
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.52 E-value=6.4e-05 Score=60.08 Aligned_cols=186 Identities=14% Similarity=0.065 Sum_probs=127.8
Q ss_pred eeeeccccCCCccccccCCCcHHHHHHHHHHHhcCChhHHHHHHHHHHHhcC-ccc---H-HHHHHHHHHcCCHHHHHHH
Q 025612 40 TVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLL-KAD---L-LDTLTELRRQNELDLALKV 114 (250)
Q Consensus 40 ~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~-~~~---~-~~ll~~~~~~~~~~~a~~~ 114 (250)
...|+...+.... +.........+.....+...|+++.|...|++.....- .|. . ..+-.++.+.|++++|...
T Consensus 14 ~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~ 92 (235)
T TIGR03302 14 LAGCSSKKKKEAD-PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAA 92 (235)
T ss_pred HhhccCCcccccC-CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4567766433222 22233334455667888899999999999999875432 121 1 1467788899999999999
Q ss_pred HHHHHHhCCCCCCH-HHHHHHHHHHHcC--------CCHHHHHHHHHHHHhCCCCCCHH-HH-----------------H
Q 025612 115 FNFVRKEVWYKPDL-SLYSDMILMLGKN--------KQIAMAEELFCELKKEGLDPDTR-VY-----------------T 167 (250)
Q Consensus 115 ~~~m~~~~g~~~~~-~~y~~li~~~~~~--------~~~~~A~~~~~~m~~~g~~p~~~-ty-----------------~ 167 (250)
++.+.+...-.|.. .++..+-.++.+. |+.++|.+.|+..... .|+.. .+ -
T Consensus 93 ~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~ 170 (235)
T TIGR03302 93 ADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKEL 170 (235)
T ss_pred HHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 99997533222221 2344444445443 7789999999998765 34321 11 1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 025612 168 EMIGVYLQVGMIDKAMETYETMKASG--CTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 168 ~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g 228 (250)
.+-..|.+.|++++|...|+...+.. -......+..+..++...|++++|..+++.+....
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34456788899999999999987652 22245788999999999999999999999887643
No 33
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.52 E-value=1.1e-07 Score=50.60 Aligned_cols=27 Identities=30% Similarity=0.365 Sum_probs=11.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 025612 131 YSDMILMLGKNKQIAMAEELFCELKKE 157 (250)
Q Consensus 131 y~~li~~~~~~~~~~~A~~~~~~m~~~ 157 (250)
||++|++|++.|++++|.++|++|.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 444444444444444444444444433
No 34
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.51 E-value=5.3e-05 Score=72.25 Aligned_cols=150 Identities=12% Similarity=0.041 Sum_probs=85.2
Q ss_pred HHHHhcCChhHHHHHHHHHHHhcCcccHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 025612 68 HAMKLAKSSSKLEEGFQSRICRLLKADLL----DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ 143 (250)
Q Consensus 68 ~~~~~~~~~~~a~~l~~~m~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~ 143 (250)
..+.+.|+.++|...+++..+.. |+.. .+...+.+.|++++|...|++..+ +.|+...|..+-..+.+.|+
T Consensus 550 ~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~ 624 (987)
T PRK09782 550 NTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHN 624 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCC
Confidence 33444555555555555554332 2222 112222234666666666666543 23456666666666666777
Q ss_pred HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 025612 144 IAMAEELFCELKKEGLDP-DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP-HKLTFTILIRNLENAGEEELVAAVR 221 (250)
Q Consensus 144 ~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~~ 221 (250)
+++|...|++.... .| +...++.+-..+...|+.++|...|++..+. .| +...+..+-.++...|++++|...+
T Consensus 625 ~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 625 VPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYA 700 (987)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 77777666666553 23 3445555556666667777777776666553 23 4455666666667777777777766
Q ss_pred HHHHh
Q 025612 222 RDCIQ 226 (250)
Q Consensus 222 ~~m~~ 226 (250)
+...+
T Consensus 701 ~~Al~ 705 (987)
T PRK09782 701 RLVID 705 (987)
T ss_pred HHHHh
Confidence 66654
No 35
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.51 E-value=9.8e-05 Score=67.63 Aligned_cols=131 Identities=17% Similarity=0.086 Sum_probs=85.2
Q ss_pred CCcHHHHHHHHHHHhcCChhHHHHHHHHHHHhcC-cccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 025612 58 VLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLL-KADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMI 135 (250)
Q Consensus 58 ~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~-~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li 135 (250)
......+.+...+...|++++|...|++..+..- .++.. .+-..+...|++++|...|+...+ .. +.+...|..+-
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~-l~-P~~~~~~~~la 440 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID-LD-PDFIFSHIQLG 440 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cC-ccCHHHHHHHH
Confidence 3344445556667778888899988888765421 12222 455566677888888888877754 21 22456666677
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 025612 136 LMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA 191 (250)
Q Consensus 136 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 191 (250)
..+.+.|++++|+..|++.... .+-+...|+.+-..+...|++++|.+.|++..+
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 7777777777777777776553 122456667777777777777777777766554
No 36
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.50 E-value=1.4e-07 Score=50.18 Aligned_cols=31 Identities=26% Similarity=0.636 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 025612 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGC 194 (250)
Q Consensus 164 ~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~ 194 (250)
+|||+||++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999885
No 37
>PRK12370 invasion protein regulator; Provisional
Probab=98.48 E-value=4.9e-05 Score=68.64 Aligned_cols=147 Identities=12% Similarity=-0.010 Sum_probs=106.9
Q ss_pred CChhHHHHHHHHHHHhcCcccHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 025612 74 KSSSKLEEGFQSRICRLLKADLL----DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEE 149 (250)
Q Consensus 74 ~~~~~a~~l~~~m~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~ 149 (250)
++.++|...+++..+. .|+.. .+-..+...|++++|...|++..+ .+ +.+...|..+-..|...|++++|..
T Consensus 318 ~~~~~A~~~~~~Al~l--dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~-l~-P~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 318 NAMIKAKEHAIKATEL--DHNNPQALGLLGLINTIHSEYIVGSLLFKQANL-LS-PISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred hHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3467888888887654 33322 344566788999999999999875 22 2246678888888999999999999
Q ss_pred HHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 025612 150 LFCELKKEGLDPDT-RVYTEMIGVYLQVGMIDKAMETYETMKASGCTP-HKLTFTILIRNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 150 ~~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
.+++..+. .|+. ..+..+...+...|++++|...+++..... .| +...+..+-.++...|++++|.+.+..+...
T Consensus 394 ~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 394 TINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 99998775 3443 233344555677899999999999887653 24 3445677778888999999999999886544
No 38
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.45 E-value=2e-05 Score=71.82 Aligned_cols=172 Identities=16% Similarity=0.090 Sum_probs=95.3
Q ss_pred CCCcHHHHHHHHHHHhcCChhH---HHHHHHHHH----Hhc-----------------CcccHHHHHHHHHHcCCHHHHH
Q 025612 57 RVLSSEAIQAVHAMKLAKSSSK---LEEGFQSRI----CRL-----------------LKADLLDTLTELRRQNELDLAL 112 (250)
Q Consensus 57 ~~~~~~~~~ll~~~~~~~~~~~---a~~l~~~m~----~~~-----------------~~~~~~~ll~~~~~~~~~~~a~ 112 (250)
.+.+.++..++.+|...|+... +.+.+..+. ..| ..||....+.-....|.++.+.
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 4555667778999999998774 222111111 112 2233334555555566666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 025612 113 KVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS 192 (250)
Q Consensus 113 ~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 192 (250)
++...+.......|..+ +|+-+..... -.+++.+.-..-.-.||+.+|.+++.+-..+|+++.|..++.+|++.
T Consensus 160 kll~~~Pvsa~~~p~~v----fLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQV----FLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHhhCCcccccchHHH----HHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 66655543222222222 2333332222 12223222222111467777777777777777777777777777777
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCchHHHHH
Q 025612 193 GCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEE 237 (250)
Q Consensus 193 g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~ 237 (250)
|+..+.+-|..|+-+ .++..-++.+++.|.+.|+.|+.-++.
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~a 275 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQA 275 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhH
Confidence 777777666666655 556666667777777777777655443
No 39
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.44 E-value=0.00018 Score=68.82 Aligned_cols=156 Identities=12% Similarity=-0.005 Sum_probs=111.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCcc-cHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH
Q 025612 66 AVHAMKLAKSSSKLEEGFQSRICRLLKA-DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQI 144 (250)
Q Consensus 66 ll~~~~~~~~~~~a~~l~~~m~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~ 144 (250)
+...+...|++++|...|+++......+ ....+..++.+.|++++|...|+...+ .. ..+...+..+...+.+.|++
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~-l~-P~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ-RG-LGDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cC-CccHHHHHHHHHHHHhCCCH
Confidence 3444457788888888888865432211 122455667788888888888888864 32 22333333333444556899
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 025612 145 AMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP-HKLTFTILIRNLENAGEEELVAAVRRD 223 (250)
Q Consensus 145 ~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~ 223 (250)
++|...|++..+. .|+...|..+-..+.+.|+.++|...|++.... .| +...++.+-.++...|++++|.+.++.
T Consensus 593 ~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 593 ELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999998887764 567888888888899999999999999988775 35 445667777788889999999998888
Q ss_pred HHhc
Q 025612 224 CIQY 227 (250)
Q Consensus 224 m~~~ 227 (250)
..+.
T Consensus 669 AL~l 672 (987)
T PRK09782 669 AHKG 672 (987)
T ss_pred HHHh
Confidence 7764
No 40
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.41 E-value=7.1e-05 Score=62.57 Aligned_cols=171 Identities=18% Similarity=0.124 Sum_probs=128.7
Q ss_pred CCCcHHHHHH-HHHHHhcCChhHHHHHHHHHHHhcCcccHH----------HHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 025612 57 RVLSSEAIQA-VHAMKLAKSSSKLEEGFQSRICRLLKADLL----------DTLTELRRQNELDLALKVFNFVRKEVWYK 125 (250)
Q Consensus 57 ~~~~~~~~~l-l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~----------~ll~~~~~~~~~~~a~~~~~~m~~~~g~~ 125 (250)
.+-.++.+.+ .+.|.+.|++..+..+...+.+.|.-.+.. .+++-+...+..+.-...++.... ..+
T Consensus 183 ~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr--~lr 260 (400)
T COG3071 183 TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPR--KLR 260 (400)
T ss_pred CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccH--Hhh
Confidence 3344556655 888889999999999999998888755443 255666666666665566666643 234
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC------------------------------HHHHHHHHHHHHh
Q 025612 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD------------------------------TRVYTEMIGVYLQ 175 (250)
Q Consensus 126 ~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~------------------------------~~ty~~li~~~~~ 175 (250)
-++..-.+++.-+.++|+.++|.++..+-.+++..|+ .-.+.+|-.-|.+
T Consensus 261 ~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k 340 (400)
T COG3071 261 NDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK 340 (400)
T ss_pred cChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 4566677888888888888888888877766665443 3447888889999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCc
Q 025612 176 VGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFP 231 (250)
Q Consensus 176 ~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 231 (250)
.+.|.+|...|+.-.+ ..|+.++|+.+-+++.+.|+.++|.++.++-...-.+|
T Consensus 341 ~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 341 NKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred hhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 9999999999996655 56999999999999999999999999998866443333
No 41
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.35 E-value=0.00011 Score=69.05 Aligned_cols=155 Identities=6% Similarity=-0.101 Sum_probs=68.9
Q ss_pred HhcCChhHHHHHHHHHHHhcCc-ccHH--HHHHHHHHcCCHHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCCHH
Q 025612 71 KLAKSSSKLEEGFQSRICRLLK-ADLL--DTLTELRRQNELDLALKVFNFVRKEVWYKP--DLSLYSDMILMLGKNKQIA 145 (250)
Q Consensus 71 ~~~~~~~~a~~l~~~m~~~~~~-~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~--~~~~y~~li~~~~~~~~~~ 145 (250)
...|+.++|...|+.+.+.+-. |+.. .+-.++...|++++|...|+.+.+.....+ ....+..|..++...|+++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 3445555555555555544321 3221 234445555555555555555432111110 1223444444555555555
Q ss_pred HHHHHHHHHHhCC-----------CCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 025612 146 MAEELFCELKKEG-----------LDPD---TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211 (250)
Q Consensus 146 ~A~~~~~~m~~~g-----------~~p~---~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 211 (250)
+|..+++.+.... -.|+ ...+..+...+...|+.++|+++++++... ..-+...+..+...+...
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence 5555555554421 0112 112233344445555555555555555432 112334444444445555
Q ss_pred CCHHHHHHHHHHHHh
Q 025612 212 GEEELVAAVRRDCIQ 226 (250)
Q Consensus 212 g~~~~a~~~~~~m~~ 226 (250)
|++++|++.++...+
T Consensus 407 g~~~~A~~~l~~al~ 421 (765)
T PRK10049 407 GWPRAAENELKKAEV 421 (765)
T ss_pred CCHHHHHHHHHHHHh
Confidence 555555555554443
No 42
>PRK12370 invasion protein regulator; Provisional
Probab=98.35 E-value=0.00016 Score=65.36 Aligned_cols=157 Identities=11% Similarity=-0.046 Sum_probs=111.6
Q ss_pred cHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 025612 60 SSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLL----DTLTELRRQNELDLALKVFNFVRKEVWYKPD-LSLYSDM 134 (250)
Q Consensus 60 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~~~y~~l 134 (250)
......+-..+...|++++|...|++..+.. |+.. .+-..+...|++++|...++...+. .|+ ...+..+
T Consensus 338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~ 412 (553)
T PRK12370 338 PQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITK 412 (553)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHH
Confidence 3333334556677899999999999987654 4322 4667788999999999999998753 343 2233444
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC
Q 025612 135 ILMLGKNKQIAMAEELFCELKKEGLDP-DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK-LTFTILIRNLENAG 212 (250)
Q Consensus 135 i~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~ty~~li~~~~~~g 212 (250)
...+...|++++|...+++..... .| +...+..+-..|...|+.++|...+.++... .|+. ...+.+...|...|
T Consensus 413 ~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 413 LWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH
Confidence 555677899999999999987653 34 4455777778888999999999999987664 3444 34455556667777
Q ss_pred CHHHHHHHHHHHHh
Q 025612 213 EEELVAAVRRDCIQ 226 (250)
Q Consensus 213 ~~~~a~~~~~~m~~ 226 (250)
+.|...++.+.+
T Consensus 490 --~~a~~~l~~ll~ 501 (553)
T PRK12370 490 --ERALPTIREFLE 501 (553)
T ss_pred --HHHHHHHHHHHH
Confidence 467776666554
No 43
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.33 E-value=0.00014 Score=71.40 Aligned_cols=160 Identities=9% Similarity=0.067 Sum_probs=123.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcCcccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 025612 64 IQAVHAMKLAKSSSKLEEGFQSRICRLLKADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNK 142 (250)
Q Consensus 64 ~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~ 142 (250)
+.....+...|+.++|..+++. ..-.+... .+-..+.+.|++++|...|+...+. . +.+...+..+...|...|
T Consensus 577 l~~a~~l~~~G~~~eA~~~l~~---~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~-~-P~~~~a~~~la~~~~~~g 651 (1157)
T PRK11447 577 LETANRLRDSGKEAEAEALLRQ---QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR-E-PGNADARLGLIEVDIAQG 651 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHCC
Confidence 3456778889999999999882 11122222 5777888999999999999998753 2 335888999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCCHHH
Q 025612 143 QIAMAEELFCELKKEGLDP-DTRVYTEMIGVYLQVGMIDKAMETYETMKASGC--TP---HKLTFTILIRNLENAGEEEL 216 (250)
Q Consensus 143 ~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p---~~~ty~~li~~~~~~g~~~~ 216 (250)
++++|.+.|+...+. .| +..++..+...+...|++++|.++|+......- .| +...+..+-..+...|+.++
T Consensus 652 ~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~ 729 (1157)
T PRK11447 652 DLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQ 729 (1157)
T ss_pred CHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHH
Confidence 999999999987653 34 455667778888999999999999999876421 22 23466667788899999999
Q ss_pred HHHHHHHHH-hccCC
Q 025612 217 VAAVRRDCI-QYVEF 230 (250)
Q Consensus 217 a~~~~~~m~-~~g~~ 230 (250)
|.+.|+... ..|+.
T Consensus 730 A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 730 ALETYKDAMVASGIT 744 (1157)
T ss_pred HHHHHHHHHhhcCCC
Confidence 999999875 44554
No 44
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.33 E-value=1.6e-05 Score=61.60 Aligned_cols=87 Identities=16% Similarity=0.316 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CChHHHHHH
Q 025612 127 DLSLYSDMILMLGK-----NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV----------------GMIDKAMET 185 (250)
Q Consensus 127 ~~~~y~~li~~~~~-----~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~----------------g~~~~a~~~ 185 (250)
+-.+|..+|+.|.+ .|.++-....+..|.+-|+.-|..+|+.||+.+=+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 44555555555542 244455555555555555555555555555544331 134556777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 025612 186 YETMKASGCTPHKLTFTILIRNLENAGE 213 (250)
Q Consensus 186 ~~~m~~~g~~p~~~ty~~li~~~~~~g~ 213 (250)
+++|...|+.||..|+..|++.+.+.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 7777777777777777777777766554
No 45
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.33 E-value=0.00023 Score=66.77 Aligned_cols=162 Identities=10% Similarity=0.038 Sum_probs=129.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhcCc-ccHH--HHHHHHHHcCCHHHHHHHHHHHHHhCC----CCCCHHHHHHHHHH
Q 025612 65 QAVHAMKLAKSSSKLEEGFQSRICRLLK-ADLL--DTLTELRRQNELDLALKVFNFVRKEVW----YKPDLSLYSDMILM 137 (250)
Q Consensus 65 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~g----~~~~~~~y~~li~~ 137 (250)
.-+-++...++..+|.+.++.+...+.+ |+.. ++-++|...+++++|+.+|..+....+ ..++......|.-+
T Consensus 297 Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA 376 (822)
T PRK14574 297 DRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYS 376 (822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHH
Confidence 4577888999999999999999988854 7666 799999999999999999999865432 23345557889999
Q ss_pred HHcCCCHHHHHHHHHHHHhCC-------------CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 025612 138 LGKNKQIAMAEELFCELKKEG-------------LDPDTRV-YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTI 203 (250)
Q Consensus 138 ~~~~~~~~~A~~~~~~m~~~g-------------~~p~~~t-y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ 203 (250)
|...+++++|..+++.+.+.- -.||-.. +..++..+...|++.+|++.++.+.... .-|......
T Consensus 377 ~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~ 455 (822)
T PRK14574 377 LNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIA 455 (822)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 999999999999999998731 1123333 3445677889999999999999997752 347788889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 025612 204 LIRNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 204 li~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
+-+.+...|++..|+++++.....
T Consensus 456 ~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 456 LASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhh
Confidence 999999999999999999665543
No 46
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.29 E-value=0.00014 Score=64.07 Aligned_cols=163 Identities=16% Similarity=0.119 Sum_probs=121.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH---h--cC-cccHH----HHHHHHHHcCCHHHHHHHHHHHHHhCC--CCC----
Q 025612 63 AIQAVHAMKLAKSSSKLEEGFQSRIC---R--LL-KADLL----DTLTELRRQNELDLALKVFNFVRKEVW--YKP---- 126 (250)
Q Consensus 63 ~~~ll~~~~~~~~~~~a~~l~~~m~~---~--~~-~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~g--~~~---- 126 (250)
...+-..|++.|++++|...++...+ . |. .|.+. .+...|+..+++++|..++....+..- ..+
T Consensus 286 l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~ 365 (508)
T KOG1840|consen 286 LNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVN 365 (508)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchH
Confidence 33456679999999999888888642 1 22 23333 477888899999999999987543211 122
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHH----HHHCCC-
Q 025612 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKE----GL--DP-DTRVYTEMIGVYLQVGMIDKAMETYET----MKASGC- 194 (250)
Q Consensus 127 ~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~----g~--~p-~~~ty~~li~~~~~~g~~~~a~~~~~~----m~~~g~- 194 (250)
-..+|+.|-..|-+.|++++|.++|.+..+. +- .+ .-..+|.|-..|.+.+..++|.++|.+ |+..|.
T Consensus 366 ~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~ 445 (508)
T KOG1840|consen 366 LAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPD 445 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCC
Confidence 2578999999999999999999999886432 22 22 245678888999999999999999876 433332
Q ss_pred CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025612 195 TPHK-LTFTILIRNLENAGEEELVAAVRRDCI 225 (250)
Q Consensus 195 ~p~~-~ty~~li~~~~~~g~~~~a~~~~~~m~ 225 (250)
.|+. .+|..|...|.+.|+++.|.++.+...
T Consensus 446 ~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 446 HPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3333 789999999999999999999988775
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.27 E-value=0.00022 Score=61.85 Aligned_cols=79 Identities=18% Similarity=0.260 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 025612 142 KQIAMAEELFCELKKEGLDPD-TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220 (250)
Q Consensus 142 ~~~~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~ 220 (250)
++.+++.+..+...+. .|+ ...+.++-..|.+.|++++|.+.|+...+. .|+..+|..+-..+.+.|+.++|.++
T Consensus 308 ~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~ 383 (398)
T PRK10747 308 NNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAM 383 (398)
T ss_pred CChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444444444444332 232 333555566666677777777777766653 46776666777777777777777666
Q ss_pred HHHH
Q 025612 221 RRDC 224 (250)
Q Consensus 221 ~~~m 224 (250)
+++-
T Consensus 384 ~~~~ 387 (398)
T PRK10747 384 RRDG 387 (398)
T ss_pred HHHH
Confidence 6654
No 48
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.26 E-value=1.8e-06 Score=78.33 Aligned_cols=94 Identities=15% Similarity=0.189 Sum_probs=83.6
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 025612 113 KVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS 192 (250)
Q Consensus 113 ~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 192 (250)
.++..+. ..|+.|+.+||.++|.-||..|+++.|- +|..|+-+.+..+...|+.++.+...+++.+.+.
T Consensus 11 nfla~~e-~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHE-ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHH-HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 4556675 5999999999999999999999999999 9999999989999999999999999999998887
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 025612 193 GCTPHKLTFTILIRNLENAGEEELVAA 219 (250)
Q Consensus 193 g~~p~~~ty~~li~~~~~~g~~~~a~~ 219 (250)
.|...||..|+.+|.+.||+..-+.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~ 104 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEV 104 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHH
Confidence 7899999999999999999766333
No 49
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.24 E-value=0.00074 Score=63.39 Aligned_cols=157 Identities=9% Similarity=-0.005 Sum_probs=100.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCc--ccHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLK--ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQI 144 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~ 144 (250)
+-...+.|+++.|+..|++..+..-. |.+..++..+...|+.++|...+++... .-.......-.+...|...|++
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHcCCH
Confidence 44456778888888888887644322 2233667777777888888888877641 1111223333335567777888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 025612 145 AMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDC 224 (250)
Q Consensus 145 ~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m 224 (250)
++|.++|+++.+.. +-|...+..++..|...++.++|++.++..... .|+...|..++..+...++..+|.+.++++
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 88888888876642 123455556677777888888888888877664 466666655544444455665577777777
Q ss_pred Hhcc
Q 025612 225 IQYV 228 (250)
Q Consensus 225 ~~~g 228 (250)
.+..
T Consensus 196 l~~~ 199 (822)
T PRK14574 196 VRLA 199 (822)
T ss_pred HHhC
Confidence 7654
No 50
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.23 E-value=0.00023 Score=63.06 Aligned_cols=179 Identities=13% Similarity=0.177 Sum_probs=144.4
Q ss_pred cccccCCCcHHHHHHHHHHHhcCChhHHHHHHHHHHHhcC-cccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC-H
Q 025612 52 PMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLL-KADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPD-L 128 (250)
Q Consensus 52 ~l~~~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~-~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~ 128 (250)
.+...+........+..++...|++.+|...+++...... .+|.. .|-..+...|.+++|..+|....+ +.|. .
T Consensus 312 al~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~a 388 (966)
T KOG4626|consen 312 ALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFA 388 (966)
T ss_pred HHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhh
Confidence 5555677777777889999999999999999999775432 23333 588889999999999999998754 3444 6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 025612 129 SLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT-RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK-LTFTILIR 206 (250)
Q Consensus 129 ~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~ty~~li~ 206 (250)
..+|.|-..|-..|++++|...|++... ++|+. ..|+.+-..|-..|+++.|...+.+..+ +.|.- ..++.|-.
T Consensus 389 aa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLas 464 (966)
T KOG4626|consen 389 AAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLAS 464 (966)
T ss_pred hhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHH
Confidence 6789999999999999999999998765 67874 6799999999999999999999988777 44643 67889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhc-cCCchHHHHH
Q 025612 207 NLENAGEEELVAAVRRDCIQY-VEFPERFLEE 237 (250)
Q Consensus 207 ~~~~~g~~~~a~~~~~~m~~~-g~~pd~~~~~ 237 (250)
.|-..|++.+|.+-+++..+. --.||++-+-
T Consensus 465 i~kDsGni~~AI~sY~~aLklkPDfpdA~cNl 496 (966)
T KOG4626|consen 465 IYKDSGNIPEAIQSYRTALKLKPDFPDAYCNL 496 (966)
T ss_pred HhhccCCcHHHHHHHHHHHccCCCCchhhhHH
Confidence 999999999999999887653 3446655443
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.21 E-value=0.00035 Score=57.20 Aligned_cols=169 Identities=15% Similarity=0.102 Sum_probs=101.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhc-CcccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHc
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRL-LKADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPD----LSLYSDMILMLGK 140 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~-~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~----~~~y~~li~~~~~ 140 (250)
-+-|-..|-+++|+.+|..+.+.+ +.+... .|+..|-...+|++|.++-..+.+ .+-.+. ..-|--|-..+..
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k-~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVK-LGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-cCCccchhHHHHHHHHHHHHHhh
Confidence 444445566666666666655433 222222 466666666666666666665543 221111 1112222222233
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 025612 141 NKQIAMAEELFCELKKEGLDPDTRVYTEMI-GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAA 219 (250)
Q Consensus 141 ~~~~~~A~~~~~~m~~~g~~p~~~ty~~li-~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 219 (250)
..+++.|..++.+-.+. .|+-+--++++ +.+...|++..|.+.++...+.+..--..+...|..+|...|+.++...
T Consensus 193 ~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 193 SSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred hhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 45566666666655443 23332233333 5667789999999999999988766666788999999999999999999
Q ss_pred HHHHHHhc--cCCchHHHHHH
Q 025612 220 VRRDCIQY--VEFPERFLEEV 238 (250)
Q Consensus 220 ~~~~m~~~--g~~pd~~~~~~ 238 (250)
++..+.+. |..+--.++.+
T Consensus 271 fL~~~~~~~~g~~~~l~l~~l 291 (389)
T COG2956 271 FLRRAMETNTGADAELMLADL 291 (389)
T ss_pred HHHHHHHccCCccHHHHHHHH
Confidence 99998765 55554444443
No 52
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.20 E-value=2.8e-05 Score=64.24 Aligned_cols=150 Identities=17% Similarity=0.111 Sum_probs=105.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHhcCcccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HcCC
Q 025612 68 HAMKLAKSSSKLEEGFQSRICRLLKADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILML----GKNK 142 (250)
Q Consensus 68 ~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~----~~~~ 142 (250)
..+...|++++|+++++.. -.+... -.+..+.+.++++.|.+.++.|.+ +..|. +-..|..++ .-.+
T Consensus 110 ~i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~-~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDS-ILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCH-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcH-HHHHHHHHHHHHHhCch
Confidence 3344568888888887652 223333 478889999999999999999963 23453 333344433 3345
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 025612 143 QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE-ELVAAVR 221 (250)
Q Consensus 143 ~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~-~~a~~~~ 221 (250)
.+.+|..+|+++.++ ..++..+.|.+..++...|++++|.+++.+..+.. .-|..|...++-+..-.|+. +.+.+.+
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 689999999998664 66888999999999999999999999998876543 22556777788888888877 7788888
Q ss_pred HHHHhc
Q 025612 222 RDCIQY 227 (250)
Q Consensus 222 ~~m~~~ 227 (250)
.+++..
T Consensus 260 ~qL~~~ 265 (290)
T PF04733_consen 260 SQLKQS 265 (290)
T ss_dssp HHCHHH
T ss_pred HHHHHh
Confidence 888765
No 53
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.19 E-value=0.00056 Score=59.27 Aligned_cols=125 Identities=6% Similarity=-0.019 Sum_probs=61.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHH
Q 025612 101 ELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT-------RVYTEMIGVY 173 (250)
Q Consensus 101 ~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-------~ty~~li~~~ 173 (250)
.+...|+++.|...++...+ .. +-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++...
T Consensus 162 l~l~~g~~~~Al~~l~~~~~-~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLE-VA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHh-cC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555532 11 223444455555555555555555555555544332211 1222222222
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 025612 174 LQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 174 ~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g 228 (250)
....+.+...++++...+. .+.++.....+..++.+.|+.+.|.+++.+..+..
T Consensus 240 ~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~ 293 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ 293 (398)
T ss_pred HHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 2223333333333333221 12345556667777888888888888887776643
No 54
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.17 E-value=0.0001 Score=65.11 Aligned_cols=164 Identities=13% Similarity=0.172 Sum_probs=99.8
Q ss_pred ccccCCCcHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC-
Q 025612 53 MWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLL----DTLTELRRQNELDLALKVFNFVRKEVWYKPD- 127 (250)
Q Consensus 53 l~~~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~- 127 (250)
+...+...+.++.+-..|...+.+++|...+.+.. ...|+.. .+-..|...|.+|.|.+.|++..+ +.|+
T Consensus 245 vkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl--~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~---~~P~F 319 (966)
T KOG4626|consen 245 VKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRAL--NLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE---LQPNF 319 (966)
T ss_pred hcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHH--hcCCcchhhccceEEEEeccccHHHHHHHHHHHHh---cCCCc
Confidence 33355566677777778888888888888887754 2334332 244445566777777777776653 3444
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 025612 128 LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD-TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK-LTFTILI 205 (250)
Q Consensus 128 ~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~ty~~li 205 (250)
...||.|-.++-..|++.+|.+.|++...- .|+ ....|.|-..|...|.+++|..+|..-.+ +.|.. ..++.|-
T Consensus 320 ~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa 395 (966)
T KOG4626|consen 320 PDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLA 395 (966)
T ss_pred hHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHH
Confidence 456777777777777777777777765542 222 34455566666666666666666655544 33433 3455555
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 025612 206 RNLENAGEEELVAAVRRDCI 225 (250)
Q Consensus 206 ~~~~~~g~~~~a~~~~~~m~ 225 (250)
..|-..|++++|...+++..
T Consensus 396 ~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 396 SIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred HHHHhcccHHHHHHHHHHHH
Confidence 55555666666555555544
No 55
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.17 E-value=0.00068 Score=58.96 Aligned_cols=56 Identities=16% Similarity=0.275 Sum_probs=31.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 025612 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223 (250)
Q Consensus 168 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~ 223 (250)
++-..|.+.|++++|.+.|+........||...+..+-..+.+.|+.++|.+++++
T Consensus 340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 340 ALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555666666666665332222345655555666666666666666666554
No 56
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.17 E-value=0.00064 Score=63.86 Aligned_cols=156 Identities=11% Similarity=0.029 Sum_probs=123.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhcCccc--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 025612 65 QAVHAMKLAKSSSKLEEGFQSRICRLLKAD--LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNK 142 (250)
Q Consensus 65 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~ 142 (250)
..+......|+.++|+++|.+.....-.+. ...+-.++.+.|++++|..+|+...+. -+.+...+..+...+...|
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCC
Confidence 346668889999999999999876332222 236778889999999999999998652 1334667788889999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 025612 143 QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP-HKLTFTILIRNLENAGEEELVAAVR 221 (250)
Q Consensus 143 ~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~~ 221 (250)
++++|...+++..+. -+.+.. +..+...+...|+.++|+..+++..+. .| +...+..+..++.+.+..+.|.+.+
T Consensus 98 ~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 98 QYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 999999999998775 223444 888888999999999999999999885 45 4455667788888899999998888
Q ss_pred HHHHh
Q 025612 222 RDCIQ 226 (250)
Q Consensus 222 ~~m~~ 226 (250)
+....
T Consensus 174 ~~~~~ 178 (765)
T PRK10049 174 DDANL 178 (765)
T ss_pred HhCCC
Confidence 75443
No 57
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.15 E-value=0.0011 Score=65.09 Aligned_cols=50 Identities=24% Similarity=0.195 Sum_probs=26.0
Q ss_pred hcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 175 QVGMIDKAMETYETMKASGCTP-HKLTFTILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 175 ~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
..|++++|.+.|++..+. .| +...+..+...|.+.|++++|...++...+
T Consensus 473 ~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~ 523 (1157)
T PRK11447 473 NQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQ 523 (1157)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555555555442 23 234444555555566666666666655543
No 58
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.00066 Score=54.19 Aligned_cols=128 Identities=15% Similarity=0.187 Sum_probs=82.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 025612 100 TELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ---- 175 (250)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~---- 175 (250)
..|+..|++++|++..+.. . +....-.=+..+.+..+++.|...++.|.+- -+..|-+.|-.++++
T Consensus 116 ~i~~~~~~~deAl~~~~~~-~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLG-E------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred HHhhcCCChHHHHHHHhcc-c------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhcc
Confidence 3466777788777777652 1 2333333334455667777777777777764 255666666666655
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC-CchHHHHHH
Q 025612 176 VGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVE-FPERFLEEV 238 (250)
Q Consensus 176 ~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~-~pd~~~~~~ 238 (250)
.+.+.+|.-+|++|-+. ..|++.+.+....++...|++++|+.++++...... .|+...+.+
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nli 248 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLI 248 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 34577777777777664 457777777777777777888888777777664433 355555544
No 59
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.09 E-value=0.00026 Score=60.73 Aligned_cols=121 Identities=17% Similarity=0.140 Sum_probs=99.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 176 (250)
+|+..+...++++.|..+|+++.+. .|+. .-.+.+.+...++-.+|.+++++.... .+-|....+.-...|.+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence 5888888889999999999999753 3553 455888888889999999999988754 233555556566778899
Q ss_pred CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025612 177 GMIDKAMETYETMKASGCTPHK-LTFTILIRNLENAGEEELVAAVRRDCI 225 (250)
Q Consensus 177 g~~~~a~~~~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~a~~~~~~m~ 225 (250)
++.+.|+.+.++..+. .|+. .+|..|..+|...|+++.|.-.++.+.
T Consensus 248 ~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999984 5765 599999999999999999999888765
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.07 E-value=0.00011 Score=60.21 Aligned_cols=148 Identities=12% Similarity=-0.015 Sum_probs=121.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHh
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE-MIGVYLQ 175 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~-li~~~~~ 175 (250)
.+-++|.+.|.+.+|++.|+.-.++ .|-+.||--|-+.|.+...++.|+.+|.+-.++ .|-.+||-. +.+.+-.
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 5888999999999999999987654 577889999999999999999999999987764 677777654 4466667
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCchHHHHHHHHhhhcc-cCcCC
Q 025612 176 VGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVYQKHRKT-QVDLV 250 (250)
Q Consensus 176 ~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~~~~~~~~-~~d~~ 250 (250)
.++.++|.++|+...+.. .-|+....++-..|.-.++.|.|.+.++.+.+.|+.......++--.++-. ++||+
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhh
Confidence 899999999999987752 236667777888888899999999999999999999777777776666655 77774
No 61
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.04 E-value=5.6e-05 Score=58.58 Aligned_cols=87 Identities=17% Similarity=0.269 Sum_probs=73.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC----------------CHHHHHHHHHHHHhCCCCCCHHHHH
Q 025612 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNK----------------QIAMAEELFCELKKEGLDPDTRVYT 167 (250)
Q Consensus 104 ~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~----------------~~~~A~~~~~~m~~~g~~p~~~ty~ 167 (250)
+.|.++-....+..|. +.|+.-|..+|+.||+.+=+.. +-+-|++++++|+..|+.||..|+.
T Consensus 64 RRGHVeFI~aAL~~M~-efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~ 142 (228)
T PF06239_consen 64 RRGHVEFIYAALKKMD-EFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQ 142 (228)
T ss_pred CcChHHHHHHHHHHHH-HcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 6788888889999997 5999999999999999987632 2367899999999999999999999
Q ss_pred HHHHHHHhcCCh-HHHHHHHHHHHH
Q 025612 168 EMIGVYLQVGMI-DKAMETYETMKA 191 (250)
Q Consensus 168 ~li~~~~~~g~~-~~a~~~~~~m~~ 191 (250)
.|++.|++.+.. .+.++++-+|.+
T Consensus 143 ~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 143 MLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHH
Confidence 999999998764 355666666654
No 62
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.03 E-value=0.00032 Score=60.16 Aligned_cols=119 Identities=17% Similarity=0.130 Sum_probs=99.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCcccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH
Q 025612 66 AVHAMKLAKSSSKLEEGFQSRICRLLKADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQI 144 (250)
Q Consensus 66 ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~ 144 (250)
+++.+...++++.|..+++++.+.. |++. .+...+...++-.+|.++.++..++ .+-|....+.-.+.|.+.++.
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--CcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCH
Confidence 5777778899999999999998766 6666 4777777888888999999998753 234677777778889999999
Q ss_pred HHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHH
Q 025612 145 AMAEELFCELKKEGLDPDTR-VYTEMIGVYLQVGMIDKAMETYETMK 190 (250)
Q Consensus 145 ~~A~~~~~~m~~~g~~p~~~-ty~~li~~~~~~g~~~~a~~~~~~m~ 190 (250)
+.|.++.+++.+. .|+.+ +|..|..+|.+.|++++|+-.++.+-
T Consensus 251 ~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999998874 56655 99999999999999999999888764
No 63
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.03 E-value=0.001 Score=57.87 Aligned_cols=162 Identities=11% Similarity=0.025 Sum_probs=103.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCcccH--H-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 025612 66 AVHAMKLAKSSSKLEEGFQSRICRLLKADL--L-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNK 142 (250)
Q Consensus 66 ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~--~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~ 142 (250)
........|+.+.|...+.+..+..-.+.. . +....+...|+++.|...++.+.+. . +-+...+..+...|...|
T Consensus 124 aA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~-~-P~~~~~l~ll~~~~~~~~ 201 (409)
T TIGR00540 124 AAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEM-A-PRHKEVLKLAEEAYIRSG 201 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHHh
Confidence 355566678888888888887543322222 1 3466667788888888888888652 2 235667778888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---HhcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHH
Q 025612 143 QIAMAEELFCELKKEGLDPDTRVYT-EMIGVY---LQVGMIDKAMETYETMKASG---CTPHKLTFTILIRNLENAGEEE 215 (250)
Q Consensus 143 ~~~~A~~~~~~m~~~g~~p~~~ty~-~li~~~---~~~g~~~~a~~~~~~m~~~g---~~p~~~ty~~li~~~~~~g~~~ 215 (250)
++++|.+++..+.+.++.+.. .+. .-..++ ...+..+++.+.+..+.+.. .+.+...+..+...+...|+.+
T Consensus 202 d~~~a~~~l~~l~k~~~~~~~-~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~ 280 (409)
T TIGR00540 202 AWQALDDIIDNMAKAGLFDDE-EFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHD 280 (409)
T ss_pred hHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChH
Confidence 888888888888877654322 221 111111 22233333333444444331 1137778888888999999999
Q ss_pred HHHHHHHHHHhccCC
Q 025612 216 LVAAVRRDCIQYVEF 230 (250)
Q Consensus 216 ~a~~~~~~m~~~g~~ 230 (250)
.|.+++++..+..-.
T Consensus 281 ~A~~~l~~~l~~~pd 295 (409)
T TIGR00540 281 SAQEIIFDGLKKLGD 295 (409)
T ss_pred HHHHHHHHHHhhCCC
Confidence 999999888765433
No 64
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.02 E-value=0.0016 Score=62.46 Aligned_cols=163 Identities=12% Similarity=0.105 Sum_probs=119.0
Q ss_pred hcCChhHHHHHHHHHHHhcCcccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 025612 72 LAKSSSKLEEGFQSRICRLLKADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEEL 150 (250)
Q Consensus 72 ~~~~~~~a~~l~~~m~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~ 150 (250)
.-|.-+...++|++..+.--...+. .|...|.+.+++++|-++++.|.+..+ .....|...+..+.++.+-++|..+
T Consensus 1509 ~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~l 1586 (1710)
T KOG1070|consen 1509 AYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAAREL 1586 (1710)
T ss_pred hhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHH
Confidence 3355556666666665543333333 688888888888899999999887655 5677888888888888888888888
Q ss_pred HHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 025612 151 FCELKKEGLDPD---TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 151 ~~~m~~~g~~p~---~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
+.+..+. -|- .....-.+..=.+.|+.+++..+|+...... .--...|+..|+.=.++|+.+.+..+|+.....
T Consensus 1587 L~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1587 LKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 8876553 233 2223334444567899999999999887652 224567999999999999999999999999999
Q ss_pred cCCch--HHHHHHH
Q 025612 228 VEFPE--RFLEEVY 239 (250)
Q Consensus 228 g~~pd--~~~~~~~ 239 (250)
++.|- .|.|..-
T Consensus 1664 ~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1664 KLSIKKMKFFFKKW 1677 (1710)
T ss_pred CCChhHhHHHHHHH
Confidence 99876 4455433
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.00 E-value=0.0028 Score=49.69 Aligned_cols=175 Identities=12% Similarity=0.039 Sum_probs=131.4
Q ss_pred cHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 025612 60 SSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLL----DTLTELRRQNELDLALKVFNFVRKEVWYKP-DLSLYSDM 134 (250)
Q Consensus 60 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~-~~~~y~~l 134 (250)
...-+.+--+|...|+...|..-+++..+.. |+.. .+-..|-+.|+.+.|.+-|+...+ +.| +..+.|.-
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNY 109 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNY 109 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhh
Confidence 3445567788889999999999999987653 4333 466777799999999999998764 233 35566777
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 025612 135 ILMLGKNKQIAMAEELFCELKKE-GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213 (250)
Q Consensus 135 i~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~ 213 (250)
=..+|..|++++|...|++-... ...--..||..+.-+..+.|+.+.|.+.|++-.+.. .-...+...+.+.....|+
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGD 188 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhccc
Confidence 77789999999999999987765 333346788888888889999999999999877642 1133677788888999999
Q ss_pred HHHHHHHHHHHHhccCC-chHHHHHHHH
Q 025612 214 EELVAAVRRDCIQYVEF-PERFLEEVYQ 240 (250)
Q Consensus 214 ~~~a~~~~~~m~~~g~~-pd~~~~~~~~ 240 (250)
+-.|...++.....|.. -+.+.=.++.
T Consensus 189 y~~Ar~~~~~~~~~~~~~A~sL~L~iri 216 (250)
T COG3063 189 YAPARLYLERYQQRGGAQAESLLLGIRI 216 (250)
T ss_pred chHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 99999999888876553 3333333433
No 66
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.96 E-value=0.0076 Score=50.08 Aligned_cols=159 Identities=14% Similarity=0.041 Sum_probs=99.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCC
Q 025612 66 AVHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKP-DLSLYSDMILMLGKNK 142 (250)
Q Consensus 66 ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~-~~~~y~~li~~~~~~~ 142 (250)
.-..+...|+.++|...|++..+..-. |... .+-..+...|++++|...|+...+ +.| +...|..+-..+...|
T Consensus 70 ~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g 146 (296)
T PRK11189 70 RGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE---LDPTYNYAYLNRGIALYYGG 146 (296)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCC
Confidence 344566778888888888887653321 1122 456667788888888888888764 234 3566777777777888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----------------------------
Q 025612 143 QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG----------------------------- 193 (250)
Q Consensus 143 ~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g----------------------------- 193 (250)
++++|.+.|+..... .|+..........+...++.++|...|.+.....
T Consensus 147 ~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~ 224 (296)
T PRK11189 147 RYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAG 224 (296)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhc
Confidence 888888888776653 3433222222222334556666666664432110
Q ss_pred CC------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 025612 194 CT------P-HKLTFTILIRNLENAGEEELVAAVRRDCIQYVE 229 (250)
Q Consensus 194 ~~------p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~ 229 (250)
+. | ....|..+-..+.+.|++++|...|+...+.+.
T Consensus 225 ~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 225 ATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 00 0 113566677778888999999999988876553
No 67
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.90 E-value=0.00047 Score=56.98 Aligned_cols=134 Identities=16% Similarity=0.101 Sum_probs=97.4
Q ss_pred CcHHHHHH-HHHHHhcCChhHHHHHHHHHHHhcCcccHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 025612 59 LSSEAIQA-VHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELR----RQNELDLALKVFNFVRKEVWYKPDLSLYSD 133 (250)
Q Consensus 59 ~~~~~~~l-l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~ 133 (250)
.+-+.+.+ +..+.+.++++.|.+.++.|.+..-.-....+..++. -.+.+.+|..+|+++. ....++..+.|.
T Consensus 129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~--~~~~~t~~~lng 206 (290)
T PF04733_consen 129 GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELS--DKFGSTPKLLNG 206 (290)
T ss_dssp TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHH--CCS--SHHHHHH
T ss_pred CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH--hccCCCHHHHHH
Confidence 45566655 8899999999999999999986543222223444433 3457999999999995 446688999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCC
Q 025612 134 MILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI-DKAMETYETMKASGCTPH 197 (250)
Q Consensus 134 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~ 197 (250)
+..++...|++++|.+++.+..+.. +-|..|...+|......|+. +.+.+++.+++.. .|+
T Consensus 207 ~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~ 268 (290)
T PF04733_consen 207 LAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS--NPN 268 (290)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCC
Confidence 9999999999999999999976543 23556666778777788887 7788899998874 354
No 68
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.90 E-value=0.00099 Score=49.14 Aligned_cols=116 Identities=13% Similarity=0.089 Sum_probs=69.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCC
Q 025612 104 RQNELDLALKVFNFVRKEVWYKPDLSL---YSDMILMLGKNKQIAMAEELFCELKKEGLDPDT--RVYTEMIGVYLQVGM 178 (250)
Q Consensus 104 ~~~~~~~a~~~~~~m~~~~g~~~~~~~---y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~ty~~li~~~~~~g~ 178 (250)
..++...+...++.+.++. +.+... .=.+-..+...|++++|...|+......-.|+. ...-.|...+...|+
T Consensus 23 ~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 4677777777777776432 112111 122335566777888888888777776522221 233334566677778
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 025612 179 IDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223 (250)
Q Consensus 179 ~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~ 223 (250)
+++|+..++....... ....+...-+.|.+.|+.++|...|+.
T Consensus 101 ~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 101 YDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8888877766444332 334555666777778888887777764
No 69
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.89 E-value=0.00079 Score=48.70 Aligned_cols=95 Identities=15% Similarity=0.098 Sum_probs=50.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 025612 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210 (250)
Q Consensus 131 y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~ 210 (250)
...+...+...|++++|.+.|+.....+ +.+...|..+-..|.+.|++++|..+++...+.+ ..+..++..+-..|..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 3444455555566666666665554432 2244555555555555566666666665554432 2234445555555555
Q ss_pred cCCHHHHHHHHHHHHhc
Q 025612 211 AGEEELVAAVRRDCIQY 227 (250)
Q Consensus 211 ~g~~~~a~~~~~~m~~~ 227 (250)
.|+++.|.+.|+...+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666555443
No 70
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.89 E-value=0.0026 Score=50.64 Aligned_cols=123 Identities=10% Similarity=-0.016 Sum_probs=101.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 177 (250)
......+.|++..|...|++.. ..-++|...||.+=-+|-+.|++++|..-|.+..+- ..-+...+|.|.-.|.-.|
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~--~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~g 182 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAA--RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL-APNEPSIANNLGMSLLLRG 182 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHh--ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHcC
Confidence 5677778899999999999985 445778999999999999999999999999887764 1224567888888888899
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 025612 178 MIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDC 224 (250)
Q Consensus 178 ~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m 224 (250)
+.+.|..++..-...+-. |...-..+.-+....|+++.|+.+...-
T Consensus 183 d~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 183 DLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred CHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 999999999998887643 5666777888888999999999876543
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.86 E-value=0.0044 Score=54.89 Aligned_cols=162 Identities=12% Similarity=0.097 Sum_probs=117.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHh-----cC-cccHHHH----HHHHHHcCCHHHHHHHHHHHHH----hCC-CCC-CH
Q 025612 65 QAVHAMKLAKSSSKLEEGFQSRICR-----LL-KADLLDT----LTELRRQNELDLALKVFNFVRK----EVW-YKP-DL 128 (250)
Q Consensus 65 ~ll~~~~~~~~~~~a~~l~~~m~~~-----~~-~~~~~~l----l~~~~~~~~~~~a~~~~~~m~~----~~g-~~~-~~ 128 (250)
.+...|...|+++.|..++.+..+. |. .|.+.++ -..|...+++++|..+|+.+.. ..| -.| -.
T Consensus 204 ~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va 283 (508)
T KOG1840|consen 204 NLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVA 283 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 3678888999999999999997643 32 3444444 4466688999999999998642 112 122 25
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHh---C--CCC-CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCC-
Q 025612 129 SLYSDMILMLGKNKQIAMAEELFCELKK---E--GLD-PDT-RVYTEMIGVYLQVGMIDKAMETYETMKAS---GCTPH- 197 (250)
Q Consensus 129 ~~y~~li~~~~~~~~~~~A~~~~~~m~~---~--g~~-p~~-~ty~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~- 197 (250)
.+++.|-..|++.|++++|...++...+ + |.. |.. .-++.+...|...+++++|..+++.-.+. -..++
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 6778888899999999988887766422 1 222 222 33677788899999999999999875432 12232
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 198 ---KLTFTILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 198 ---~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
..+|+.|-..|...|++++|+++++....
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~ 395 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQ 395 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 26799999999999999999999998754
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.85 E-value=0.00095 Score=54.93 Aligned_cols=165 Identities=14% Similarity=0.026 Sum_probs=129.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhcCcccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHcCC
Q 025612 65 QAVHAMKLAKSSSKLEEGFQSRICRLLKADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLY-SDMILMLGKNK 142 (250)
Q Consensus 65 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y-~~li~~~~~~~ 142 (250)
.+-++|.+.|.+.+|...+..-.+.--.||.. -|-++|.+..+.+.|+.+|.+-.+. -|-.+|| .-.-+.+-..+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~---fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS---FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---CCchhhhhhhhHHHHHHHH
Confidence 46788889999999999999887776667777 4778899999999999999987642 3444555 44557777788
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 025612 143 QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222 (250)
Q Consensus 143 ~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~ 222 (250)
+.++|.++|....+. -..+.....++-.+|.-.++.+-|+++|+++.+.|+. ++..|+.+--+|.-.+++|.+.--|.
T Consensus 305 ~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999987664 1335666777778899999999999999999999985 78888888888888889988877766
Q ss_pred HHHh----ccCCchHH
Q 025612 223 DCIQ----YVEFPERF 234 (250)
Q Consensus 223 ~m~~----~g~~pd~~ 234 (250)
.... .|...|.+
T Consensus 383 RAlstat~~~~aaDvW 398 (478)
T KOG1129|consen 383 RALSTATQPGQAADVW 398 (478)
T ss_pred HHHhhccCcchhhhhh
Confidence 6543 44445444
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.83 E-value=0.0088 Score=49.68 Aligned_cols=146 Identities=11% Similarity=0.023 Sum_probs=106.4
Q ss_pred CChhHHHHHHHHHHHhc-CcccHH-----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 025612 74 KSSSKLEEGFQSRICRL-LKADLL-----DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMA 147 (250)
Q Consensus 74 ~~~~~a~~l~~~m~~~~-~~~~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A 147 (250)
++.+.+..-+.++.... ..|+.. .+-..+.+.|+.++|...|++..+ .. +.+...|+.+-..|...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~-l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALA-LR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 44455666666665432 333321 244467789999999999999875 22 33588999999999999999999
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025612 148 EELFCELKKEGLDPD-TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCI 225 (250)
Q Consensus 148 ~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~ 225 (250)
...|+...+. .|+ ..+|..+...+...|++++|.+.|+...+. .|+..........+...++.++|.+.+....
T Consensus 118 ~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 118 YEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999998764 454 677888888899999999999999998774 4654322233333456778999999997654
No 74
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.83 E-value=0.00067 Score=55.87 Aligned_cols=124 Identities=15% Similarity=0.178 Sum_probs=52.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhc-CcccHH-H-HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 025612 65 QAVHAMKLAKSSSKLEEGFQSRICRL-LKADLL-D-TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141 (250)
Q Consensus 65 ~ll~~~~~~~~~~~a~~l~~~m~~~~-~~~~~~-~-ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~ 141 (250)
.+++.+.+.+..+.|..+|.+..+.+ +..++. . -.-.+...++.+.|.++|+...+. +..+...|..-|+.+.+.
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHh
Confidence 33444444444555555555554322 122222 1 111122234444455555554432 223444455555555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 025612 142 KQIAMAEELFCELKKEGLDPDT---RVYTEMIGVYLQVGMIDKAMETYETMKA 191 (250)
Q Consensus 142 ~~~~~A~~~~~~m~~~g~~p~~---~ty~~li~~~~~~g~~~~a~~~~~~m~~ 191 (250)
++.+.|..+|+..... +.++. ..|...|.-=.+.|+++.+.++.+++.+
T Consensus 84 ~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 84 NDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp T-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555554433 11111 2455555555555555555555555544
No 75
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.79 E-value=0.0021 Score=46.46 Aligned_cols=105 Identities=15% Similarity=0.132 Sum_probs=80.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 176 (250)
.+...+...|++++|...|+...+ .+ +.+...|..+-..|.+.|++++|...|++....+ +.+..+|..+-..|...
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~-~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAA-YD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHH-hC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHc
Confidence 466677788999999999998864 22 3467788888889999999999999999876653 44567777777888899
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 025612 177 GMIDKAMETYETMKASGCTPHKLTFTILIR 206 (250)
Q Consensus 177 g~~~~a~~~~~~m~~~g~~p~~~ty~~li~ 206 (250)
|+.++|...|+...+. .|+...+..+..
T Consensus 99 g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 126 (135)
T TIGR02552 99 GEPESALKALDLAIEI--CGENPEYSELKE 126 (135)
T ss_pred CCHHHHHHHHHHHHHh--ccccchHHHHHH
Confidence 9999999999888774 466655544433
No 76
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.78 E-value=0.0023 Score=44.83 Aligned_cols=97 Identities=18% Similarity=0.112 Sum_probs=42.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHH
Q 025612 131 YSDMILMLGKNKQIAMAEELFCELKKEGL--DPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG--CTPHKLTFTILIR 206 (250)
Q Consensus 131 y~~li~~~~~~~~~~~A~~~~~~m~~~g~--~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~ty~~li~ 206 (250)
+-.+...+.+.|++++|.+.|+++....- ......+..+...+.+.|++++|...|+...... .......+..+-.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 33444444455555555555555443210 0012233334445555555555555555544321 1111233444444
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 025612 207 NLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 207 ~~~~~g~~~~a~~~~~~m~~~ 227 (250)
++.+.|+.++|.+.+++..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 455555555555555555444
No 77
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.77 E-value=0.0079 Score=49.53 Aligned_cols=161 Identities=13% Similarity=0.020 Sum_probs=111.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhcCcccHH------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 025612 65 QAVHAMKLAKSSSKLEEGFQSRICRLLKADLL------DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILML 138 (250)
Q Consensus 65 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~------~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~ 138 (250)
.+-+.|-+.|..++|+.+...+.++---+... .|-.-|-..|-+|.|+++|..+..+.. --...--.|+..|
T Consensus 74 tLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e--fa~~AlqqLl~IY 151 (389)
T COG2956 74 TLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE--FAEGALQQLLNIY 151 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh--hhHHHHHHHHHHH
Confidence 44566667789999998888876543222111 366667788889999999998864221 2245567888889
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCC
Q 025612 139 GKNKQIAMAEELFCELKKEGLDPDT----RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFT-ILIRNLENAGE 213 (250)
Q Consensus 139 ~~~~~~~~A~~~~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~-~li~~~~~~g~ 213 (250)
-...+|++|+++-.++...|-.+.. ..|.-|-..+....+++.|...+.+-.+.. |+.+--+ .+=+.+...|+
T Consensus 152 Q~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~ 229 (389)
T COG2956 152 QATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGD 229 (389)
T ss_pred HHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccc
Confidence 9999999999988888776433332 234445555555678888888888877653 4443333 34467778999
Q ss_pred HHHHHHHHHHHHhccC
Q 025612 214 EELVAAVRRDCIQYVE 229 (250)
Q Consensus 214 ~~~a~~~~~~m~~~g~ 229 (250)
+..|.+.+....+.+.
T Consensus 230 y~~AV~~~e~v~eQn~ 245 (389)
T COG2956 230 YQKAVEALERVLEQNP 245 (389)
T ss_pred hHHHHHHHHHHHHhCh
Confidence 9999999988877654
No 78
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.77 E-value=0.0047 Score=52.38 Aligned_cols=152 Identities=16% Similarity=0.061 Sum_probs=105.7
Q ss_pred HHHhcCChhHHHHHHHHHHHhcCcccHHHHHH---HHHH----cCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHc
Q 025612 69 AMKLAKSSSKLEEGFQSRICRLLKADLLDTLT---ELRR----QNELDLALKVFNFVRKEVWYKPD-LSLYSDMILMLGK 140 (250)
Q Consensus 69 ~~~~~~~~~~a~~l~~~m~~~~~~~~~~~ll~---~~~~----~~~~~~a~~~~~~m~~~~g~~~~-~~~y~~li~~~~~ 140 (250)
.+...|++++|..++++..+. .|+....+. .+.. .+..+.+.+.+... ....|+ ......+-..+..
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLW---APENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhcc---CcCCCCcHHHHHHHHHHHHH
Confidence 345679999999999998764 233321111 2222 34555555555441 222333 3444556677889
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHHhcCCHHHH
Q 025612 141 NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG-CTPHK--LTFTILIRNLENAGEEELV 217 (250)
Q Consensus 141 ~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~--~ty~~li~~~~~~g~~~~a 217 (250)
.|++++|...+++..+.. +.+...+..+-..|...|++++|...+++..... ..|+. ..|..+...+...|++++|
T Consensus 127 ~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 127 AGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred cCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999988753 3346677888889999999999999999877642 12333 3466788899999999999
Q ss_pred HHHHHHHHh
Q 025612 218 AAVRRDCIQ 226 (250)
Q Consensus 218 ~~~~~~m~~ 226 (250)
.+++++...
T Consensus 206 ~~~~~~~~~ 214 (355)
T cd05804 206 LAIYDTHIA 214 (355)
T ss_pred HHHHHHHhc
Confidence 999999854
No 79
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.76 E-value=0.0011 Score=43.42 Aligned_cols=93 Identities=14% Similarity=0.141 Sum_probs=50.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 025612 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210 (250)
Q Consensus 131 y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~ 210 (250)
|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.|+.....+ ..+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3344455555666666666666554431 1222445555555566666666666666555432 1233455555566666
Q ss_pred cCCHHHHHHHHHHHH
Q 025612 211 AGEEELVAAVRRDCI 225 (250)
Q Consensus 211 ~g~~~~a~~~~~~m~ 225 (250)
.|+++.|.+.+....
T Consensus 81 ~~~~~~a~~~~~~~~ 95 (100)
T cd00189 81 LGKYEEALEAYEKAL 95 (100)
T ss_pred HHhHHHHHHHHHHHH
Confidence 666666666655544
No 80
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.75 E-value=0.0072 Score=44.51 Aligned_cols=90 Identities=14% Similarity=0.015 Sum_probs=39.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 025612 134 MILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213 (250)
Q Consensus 134 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~ 213 (250)
+-..+...|++++|...|+...... +.+...|..+-..+.+.|++++|...|+...... ..+...+..+-.++.+.|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3334444444444444444443321 1233444444444444444444444444444321 1133444444444444444
Q ss_pred HHHHHHHHHHHH
Q 025612 214 EELVAAVRRDCI 225 (250)
Q Consensus 214 ~~~a~~~~~~m~ 225 (250)
+++|.+.|+...
T Consensus 108 ~~eAi~~~~~Al 119 (144)
T PRK15359 108 PGLAREAFQTAI 119 (144)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 81
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.75 E-value=0.0035 Score=46.19 Aligned_cols=101 Identities=8% Similarity=-0.066 Sum_probs=82.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 176 (250)
..-.++...|++++|...|+.... .. +.+...|..+-.++.+.|++++|...|+..... -+.+..++..+-.++.+.
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~-~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVM-AQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML-DASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHc
Confidence 455677899999999999999864 22 346888899999999999999999999998874 244778889999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHH
Q 025612 177 GMIDKAMETYETMKASGCTPHKLTFT 202 (250)
Q Consensus 177 g~~~~a~~~~~~m~~~g~~p~~~ty~ 202 (250)
|+.++|...|+...+. .|+...|.
T Consensus 106 g~~~eAi~~~~~Al~~--~p~~~~~~ 129 (144)
T PRK15359 106 GEPGLAREAFQTAIKM--SYADASWS 129 (144)
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHH
Confidence 9999999999998774 46554444
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.73 E-value=0.014 Score=45.94 Aligned_cols=168 Identities=14% Similarity=0.072 Sum_probs=130.1
Q ss_pred cCCCcHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHHH----HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHH
Q 025612 56 SRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLD----TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLY 131 (250)
Q Consensus 56 ~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~----ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y 131 (250)
.+...-....+...|-+.|+.+.|.+-|++..+ +.|+... .=.-+|..|++++|.+.|+.......+..-..||
T Consensus 65 DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~ 142 (250)
T COG3063 65 DPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTL 142 (250)
T ss_pred CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhh
Confidence 333333333447777888999999999999764 3343333 3344678999999999999987654444456789
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 025612 132 SDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211 (250)
Q Consensus 132 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 211 (250)
..+--+..++|+++.|.+.|.+-.+.. +-...+.-.+-....+.|++-.|..+++.....|. ++..+....|+.-.+.
T Consensus 143 eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~ 220 (250)
T COG3063 143 ENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRL 220 (250)
T ss_pred hhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHh
Confidence 999888999999999999999877651 11345566777888899999999999999888876 9999999999999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 025612 212 GEEELVAAVRRDCIQY 227 (250)
Q Consensus 212 g~~~~a~~~~~~m~~~ 227 (250)
|+.+.+.+.=..+.+.
T Consensus 221 gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 221 GDRAAAQRYQAQLQRL 236 (250)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 9999998887777654
No 83
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.70 E-value=0.00069 Score=60.18 Aligned_cols=158 Identities=15% Similarity=0.058 Sum_probs=79.9
Q ss_pred CcHHHHHHHHHHHhcCChhHHHHHHHHHHHhc-Ccc---cHH--------------------------------HHHHHH
Q 025612 59 LSSEAIQAVHAMKLAKSSSKLEEGFQSRICRL-LKA---DLL--------------------------------DTLTEL 102 (250)
Q Consensus 59 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~-~~~---~~~--------------------------------~ll~~~ 102 (250)
.+|-...+-++|...+++++|.++|+...+.. ... ++. ++=+.|
T Consensus 352 t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcf 431 (638)
T KOG1126|consen 352 TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCF 431 (638)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchh
Confidence 34555667777888888888888888775321 111 110 122334
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCC
Q 025612 103 RRQNELDLALKVFNFVRKEVWYKP-DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM---IGVYLQVGM 178 (250)
Q Consensus 103 ~~~~~~~~a~~~~~~m~~~~g~~~-~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~l---i~~~~~~g~ 178 (250)
.-.++.+.|.+.|+.... +.| .+.+|+-+=+-+.....+|.|...|..-. .+|...||++ -..|.+.++
T Consensus 432 SLQkdh~~Aik~f~RAiQ---ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rhYnAwYGlG~vy~Kqek 504 (638)
T KOG1126|consen 432 SLQKDHDTAIKCFKRAIQ---LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRHYNAWYGLGTVYLKQEK 504 (638)
T ss_pred hhhhHHHHHHHHHHHhhc---cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchhhHHHHhhhhheeccch
Confidence 445667777777776542 233 34444444444444445555555544432 2344445443 234445555
Q ss_pred hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025612 179 IDKAMETYETMKASGCTP-HKLTFTILIRNLENAGEEELVAAVRRDCI 225 (250)
Q Consensus 179 ~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~ 225 (250)
++.|+-.|+...+ +.| |.+....+-..+.+.|+.|+|.+++++..
T Consensus 505 ~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 505 LEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAI 550 (638)
T ss_pred hhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence 5555555554444 223 33444444444445555555555554443
No 84
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.0062 Score=48.80 Aligned_cols=151 Identities=14% Similarity=0.055 Sum_probs=110.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCcccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----cC
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLKADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG----KN 141 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~----~~ 141 (250)
..-|+..+++++|++.... +...+.. .=+..+.|..+++.|.+..+.|.. --+..|.+-|-.++. -.
T Consensus 115 a~i~~~~~~~deAl~~~~~----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~----ided~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHL----GENLEAAALNVQILLKMHRFDLAEKELKKMQQ----IDEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred hHHhhcCCChHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cchHHHHHHHHHHHHHHhccc
Confidence 4557788999999988776 2222222 234556688999999999999974 235677776666665 35
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 025612 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE-EELVAAV 220 (250)
Q Consensus 142 ~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~-~~~a~~~ 220 (250)
+.+.+|.-+|++|.++ ..|+..+-|-...++...|++++|..++++.....-. ++.|...+|-+-.-.|. .+-..+.
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHH
Confidence 6789999999999764 7899999999999999999999999999998776433 45666556555555555 4556677
Q ss_pred HHHHHhc
Q 025612 221 RRDCIQY 227 (250)
Q Consensus 221 ~~~m~~~ 227 (250)
+..++..
T Consensus 265 l~QLk~~ 271 (299)
T KOG3081|consen 265 LSQLKLS 271 (299)
T ss_pred HHHHHhc
Confidence 7776654
No 85
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.68 E-value=0.0071 Score=51.99 Aligned_cols=152 Identities=11% Similarity=0.132 Sum_probs=95.2
Q ss_pred HhcCChhHHHHHHHHHHHhcCc-cc-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 025612 71 KLAKSSSKLEEGFQSRICRLLK-AD-LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAE 148 (250)
Q Consensus 71 ~~~~~~~~a~~l~~~m~~~~~~-~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~ 148 (250)
...|+.++|++.|-++..--.. .. .+.+-..|-...+...|.+++.+.. .-++-|....+.|-+.|-+.|+-..|.
T Consensus 535 e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~--slip~dp~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 535 EALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN--SLIPNDPAILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc--ccCCCCHHHHHHHHHHhhcccchhhhh
Confidence 3457777777777665321110 01 1134555555666677777766652 334556777778888888888877777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhc
Q 025612 149 ELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN-AGEEELVAAVRRDCIQY 227 (250)
Q Consensus 149 ~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~-~g~~~~a~~~~~~m~~~ 227 (250)
.++-+--. =++.|..|...|-..|....-++++..+|++..- +.|+..-|..+|..|.| .|++..|.+++++..+.
T Consensus 613 q~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 613 QCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred hhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 66543211 2444666666677777777777777777776544 56777777777777664 67777777777776543
No 86
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.65 E-value=0.013 Score=45.75 Aligned_cols=151 Identities=9% Similarity=0.053 Sum_probs=109.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAM 146 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~ 146 (250)
+-.|...|++..+..-...+. .|. ..+...++.+++...++...+.. +.|...|..|-..|...|++++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~----~~~-----~~~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA----DPL-----HQFASQQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh----Ccc-----ccccCchhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHH
Confidence 556778899888643332211 111 12223566677777777765422 4578899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 025612 147 AEELFCELKKEGLDPDTRVYTEMIGV-YLQVGM--IDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223 (250)
Q Consensus 147 A~~~~~~m~~~g~~p~~~ty~~li~~-~~~~g~--~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~ 223 (250)
|...|++..... +-+...+..+-.+ |...|+ .++|.+++++..+..- -+...+..+-..+.+.|++++|...|+.
T Consensus 92 A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 92 ALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999887742 2366677777765 467777 5999999999988642 2667888888999999999999999999
Q ss_pred HHhccCC
Q 025612 224 CIQYVEF 230 (250)
Q Consensus 224 m~~~g~~ 230 (250)
+.+..-+
T Consensus 170 aL~l~~~ 176 (198)
T PRK10370 170 VLDLNSP 176 (198)
T ss_pred HHhhCCC
Confidence 9765443
No 87
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.64 E-value=0.019 Score=48.40 Aligned_cols=132 Identities=8% Similarity=0.022 Sum_probs=74.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHH
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT-------RVYTEMI 170 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-------~ty~~li 170 (250)
.-......|+++.|..-.+++.+ .+ +-+.........+|.+.|++..+..++..|.+.|+--|. .+|+.++
T Consensus 159 rarlll~~~d~~aA~~~v~~ll~-~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL 236 (400)
T COG3071 159 RARLLLNRRDYPAARENVDQLLE-MT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLL 236 (400)
T ss_pred HHHHHHhCCCchhHHHHHHHHHH-hC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHH
Confidence 33334444555555544444432 11 223445555555666666666666666666555544332 3455555
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCch
Q 025612 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232 (250)
Q Consensus 171 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd 232 (250)
+-....+..+.-...|++.... .+-++..-.+++.-+.++|+.+.|.++..+-.+.+..|.
T Consensus 237 ~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 237 QQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred HHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence 5544444444444444444322 233445566788888889999999999888887777776
No 88
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.61 E-value=0.006 Score=44.92 Aligned_cols=119 Identities=17% Similarity=0.110 Sum_probs=86.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCcccHH-----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHH
Q 025612 66 AVHAMKLAKSSSKLEEGFQSRICRLLKADLL-----DTLTELRRQNELDLALKVFNFVRKEVWYKPDL--SLYSDMILML 138 (250)
Q Consensus 66 ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~--~~y~~li~~~ 138 (250)
++..+ ..++...+...++.+.+..-..... .+-..+...|++++|...|+.... ....|+. ...-.|-..+
T Consensus 18 ~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~-~~~d~~l~~~a~l~LA~~~ 95 (145)
T PF09976_consen 18 ALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA-NAPDPELKPLARLRLARIL 95 (145)
T ss_pred HHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCHHHHHHHHHHHHHHH
Confidence 34444 4799999999999988653322122 366788899999999999999975 4322321 2344567888
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 025612 139 GKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYET 188 (250)
Q Consensus 139 ~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~ 188 (250)
...|++++|...++...... .....+...-..|.+.|+.++|...|+.
T Consensus 96 ~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 96 LQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 89999999999997754332 3445566777899999999999999975
No 89
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.016 Score=49.93 Aligned_cols=154 Identities=18% Similarity=0.169 Sum_probs=94.2
Q ss_pred HHHHhcCChhHHHHHHHHHHHhc-Cccc---HHH--------------------------------HHHHHHHcCCHHHH
Q 025612 68 HAMKLAKSSSKLEEGFQSRICRL-LKAD---LLD--------------------------------TLTELRRQNELDLA 111 (250)
Q Consensus 68 ~~~~~~~~~~~a~~l~~~m~~~~-~~~~---~~~--------------------------------ll~~~~~~~~~~~a 111 (250)
.+.-..++++.|+.+|+++.+.. ...+ ..+ +-+=|+-.++.++|
T Consensus 270 ~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKA 349 (559)
T KOG1155|consen 270 AASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKA 349 (559)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHH
Confidence 34446699999999999998752 1111 110 11112233567899
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC--------------------------------
Q 025612 112 LKVFNFVRKEVWYKPD-LSLYSDMILMLGKNKQIAMAEELFCELKKEG-------------------------------- 158 (250)
Q Consensus 112 ~~~~~~m~~~~g~~~~-~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g-------------------------------- 158 (250)
...|+...+ +.|. ...|+.+=+-|....+...|.+-++...+-+
T Consensus 350 v~YFkRALk---LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~ 426 (559)
T KOG1155|consen 350 VMYFKRALK---LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE 426 (559)
T ss_pred HHHHHHHHh---cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh
Confidence 999998765 2333 5667777788888888888877777655421
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025612 159 LDP-DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCI 225 (250)
Q Consensus 159 ~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~ 225 (250)
++| |...|.+|-.+|.+.++.++|.+.|......|-. +...|..|-+.|-+.++.++|.+.+..-.
T Consensus 427 ~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 427 LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 122 4556666666666666666666666665554422 44556666666666666666655555443
No 90
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.61 E-value=0.014 Score=52.12 Aligned_cols=159 Identities=11% Similarity=0.057 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh---C----------CCCCCHHHH--HHHHHHHHcCC
Q 025612 78 KLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKE---V----------WYKPDLSLY--SDMILMLGKNK 142 (250)
Q Consensus 78 ~a~~l~~~m~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~----------g~~~~~~~y--~~li~~~~~~~ 142 (250)
.+...+..+...|+++-...|-..|....+.+-..+++.....+ . .-.|+...| .-+-..|-+.|
T Consensus 129 ~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g 208 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLG 208 (517)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhC
Confidence 34455555556665443334555555555566666666665421 1 123444444 44556688899
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 025612 143 QIAMAEELFCELKKEGLDPD-TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221 (250)
Q Consensus 143 ~~~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~ 221 (250)
++++|++.+++-.+. .|+ ...|..-.+.|-+.|++.+|.+.++.-+.... -|.+.=+-....+.|+|++++|++++
T Consensus 209 ~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 209 DYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred CHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999988776 466 55677778888899999999999999988754 37888888899999999999999999
Q ss_pred HHHHhccCCchHHHHHHH
Q 025612 222 RDCIQYVEFPERFLEEVY 239 (250)
Q Consensus 222 ~~m~~~g~~pd~~~~~~~ 239 (250)
..-.+.+..|-..++.++
T Consensus 286 ~~Ftr~~~~~~~~L~~mQ 303 (517)
T PF12569_consen 286 SLFTREDVDPLSNLNDMQ 303 (517)
T ss_pred HhhcCCCCCcccCHHHHH
Confidence 998888776655554443
No 91
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.60 E-value=0.0096 Score=45.18 Aligned_cols=62 Identities=26% Similarity=0.230 Sum_probs=29.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 025612 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPD--TRVYTEMIGVYLQVGMIDKAMETYETMKA 191 (250)
Q Consensus 130 ~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 191 (250)
.|..+-..|...|++++|...|++....+-.+. ...|..+...|.+.|++++|...+++..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444445555555555555555443221111 23444555555555555555555555444
No 92
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.60 E-value=0.015 Score=53.91 Aligned_cols=124 Identities=12% Similarity=0.094 Sum_probs=99.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPD-LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT-RVYTEMIGVYLQ 175 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~ty~~li~~~~~ 175 (250)
|-......|.+++|..+++...+ +.|+ ....-.+...+.+.+++++|...+++.... .|+. ...+.+-.++.+
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~ 166 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDE 166 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHH
Confidence 55566678999999999998864 4565 566677888999999999999999998775 4554 455666678888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 025612 176 VGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 176 ~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
.|++++|..+|++....+ .-+..++..+-.++-..|+.++|...|+...+.
T Consensus 167 ~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 167 IGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred hcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999998743 223688888889999999999999999987653
No 93
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.58 E-value=0.012 Score=50.92 Aligned_cols=122 Identities=14% Similarity=0.089 Sum_probs=89.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPD-LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD-TRVYTEMIGVYLQ 175 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~ 175 (250)
.--.+...|+++.|+..++.+.+. .|+ ..-+......+.+.++.++|.+.++.+... .|+ ...+-.+-.+|.+
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~ 386 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHh
Confidence 333455778889999999988752 444 444555667888999999999999888774 566 4455556678888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025612 176 VGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCI 225 (250)
Q Consensus 176 ~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~ 225 (250)
.|+..+|..++++-... .+-|+..|..|-++|...|+..++..-..+..
T Consensus 387 ~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 387 GGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred cCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 99999999888887665 34477889999988888877666655555543
No 94
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.55 E-value=0.016 Score=53.73 Aligned_cols=139 Identities=11% Similarity=-0.043 Sum_probs=106.8
Q ss_pred HHHHH-HHHHHHhcCChhHHHHHHHHHHHhcCcccHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 025612 61 SEAIQ-AVHAMKLAKSSSKLEEGFQSRICRLLKADLL----DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMI 135 (250)
Q Consensus 61 ~~~~~-ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li 135 (250)
.+++. +.+.....|..++|..+|+.... +.|+.. .+..++.+.+++++|...+++... .. +-+....+.+-
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~-~~-p~~~~~~~~~a 161 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS-GG-SSSAREILLEA 161 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh-cC-CCCHHHHHHHH
Confidence 34443 35556677999999999999874 566665 588899999999999999999874 22 33566777888
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 025612 136 LMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205 (250)
Q Consensus 136 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li 205 (250)
.++.+.|++++|.++|++.... -.-+..++..+-..+-+.|+.++|...|+...+. ..|...-|+..+
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 8899999999999999999873 2234788888888999999999999999998664 124444554443
No 95
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.51 E-value=0.034 Score=44.81 Aligned_cols=161 Identities=11% Similarity=0.051 Sum_probs=112.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHH-----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 025612 63 AIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLL-----DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILM 137 (250)
Q Consensus 63 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~ 137 (250)
.......+...|++++|.+.|+++...--.+... .+..++.+.+++++|...|++..+...-.|++ .|--.+.+
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g 113 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRG 113 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHH
Confidence 3355666677899999999999998644333222 37788899999999999999998754444443 44444444
Q ss_pred HHc-----------------CCCH---HHHHHHHHHHHhCCCCCCH------HHH------------HHHHHHHHhcCCh
Q 025612 138 LGK-----------------NKQI---AMAEELFCELKKEGLDPDT------RVY------------TEMIGVYLQVGMI 179 (250)
Q Consensus 138 ~~~-----------------~~~~---~~A~~~~~~m~~~g~~p~~------~ty------------~~li~~~~~~g~~ 179 (250)
.+. ..+. ..|...|+++.+. -|++ ... -.+.+-|.+.|.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y 191 (243)
T PRK10866 114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAY 191 (243)
T ss_pred HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 331 1123 3455666666553 3432 111 1233468899999
Q ss_pred HHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 180 DKAMETYETMKAS--GCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 180 ~~a~~~~~~m~~~--g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
..|..-|+.+.+. +........-.++++|...|..++|.++...+..
T Consensus 192 ~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 192 VAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 9999999999876 5556667888999999999999999998877653
No 96
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0051 Score=54.04 Aligned_cols=193 Identities=10% Similarity=0.016 Sum_probs=126.8
Q ss_pred cCCCCCCCccceeeeeccccCCCccccc----cCCCcHHHHHHHHHHHhcCChhHHHHHHHHHHH--hcCc-ccHHHHHH
Q 025612 28 ISLPSGKKIQALTVTCGLRDANKKPMWR----SRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRIC--RLLK-ADLLDTLT 100 (250)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~--~~~~-~~~~~ll~ 100 (250)
....+|-++..-+...+....+|+-+.+ .+...+.++..-+.++-.+..+.|...+...-+ .|.. |.. =+--
T Consensus 310 ~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L-Ylgm 388 (611)
T KOG1173|consen 310 SKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL-YLGM 388 (611)
T ss_pred CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH-HHHH
Confidence 3344566655555555666656553222 556677788788888888999988888887643 2222 222 2333
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHH
Q 025612 101 ELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE--GLDP----DTRVYTEMIGVYL 174 (250)
Q Consensus 101 ~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p----~~~ty~~li~~~~ 174 (250)
-|.+.++.+.|.++|.+... -.+-|+...+-+=-..-..+.+.+|...|+.-.+. .+.+ -..+++.|-..|.
T Consensus 389 ey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred HHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 56678888888888887642 22335666666655555677888888888776521 1111 2345667777788
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 025612 175 QVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDC 224 (250)
Q Consensus 175 ~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m 224 (250)
+.+..++|+..|+.-.... .-|..||.++--.|.-.|+++.|.+.|++-
T Consensus 467 kl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 8888888888888776642 236677777777788888888888887754
No 97
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.50 E-value=0.013 Score=40.96 Aligned_cols=96 Identities=13% Similarity=-0.019 Sum_probs=65.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWY-KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG--LDPDTRVYTEMIGVY 173 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~-~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g--~~p~~~ty~~li~~~ 173 (250)
.+...+.+.|++++|.+.|..+.+...- ......+..+...+.+.|+++.|...|+...... -......+..+...+
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 4556667788888888888887643211 1113455667778888888888888888876531 111245566677777
Q ss_pred HhcCChHHHHHHHHHHHHC
Q 025612 174 LQVGMIDKAMETYETMKAS 192 (250)
Q Consensus 174 ~~~g~~~~a~~~~~~m~~~ 192 (250)
.+.|+.++|...+++..+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 8888888888888888775
No 98
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.49 E-value=0.00028 Score=46.83 Aligned_cols=20 Identities=15% Similarity=0.041 Sum_probs=9.6
Q ss_pred HHHHHHcCCCHHHHHHHHHH
Q 025612 134 MILMLGKNKQIAMAEELFCE 153 (250)
Q Consensus 134 li~~~~~~~~~~~A~~~~~~ 153 (250)
+-.+|.+.|++++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 44444444555555444444
No 99
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.47 E-value=0.00034 Score=46.38 Aligned_cols=81 Identities=16% Similarity=0.167 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 025612 141 NKQIAMAEELFCELKKEGL-DPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAA 219 (250)
Q Consensus 141 ~~~~~~A~~~~~~m~~~g~-~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 219 (250)
.|+++.|..+|+++.+..- .|+...+-.+..+|.+.|++++|..+++. .+.+. .+....-.+-.+|.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 5789999999999987632 22455555689999999999999999998 32221 122444455788999999999999
Q ss_pred HHHH
Q 025612 220 VRRD 223 (250)
Q Consensus 220 ~~~~ 223 (250)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9875
No 100
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.42 E-value=0.0031 Score=45.29 Aligned_cols=85 Identities=15% Similarity=0.159 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHH---------------HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 025612 128 LSLYSDMILMLGKNKQIAMAEELFCEL---------------KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS 192 (250)
Q Consensus 128 ~~~y~~li~~~~~~~~~~~A~~~~~~m---------------~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 192 (250)
..++.++|-++++.|+++....+++.. ..+.+.|+..+-.+++.+|+..|++..|+++.+...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 445556666666666666555555432 12245677777788888888888888888887776543
Q ss_pred -CCCCCHHHHHHHHHHHHhcC
Q 025612 193 -GCTPHKLTFTILIRNLENAG 212 (250)
Q Consensus 193 -g~~p~~~ty~~li~~~~~~g 212 (250)
++..+..+|..|++-+...-
T Consensus 82 Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred cCCCCCHHHHHHHHHHHHHhc
Confidence 77777777777777665443
No 101
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.41 E-value=0.0044 Score=40.44 Aligned_cols=91 Identities=15% Similarity=0.141 Sum_probs=65.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 177 (250)
+...+...|++++|..+|+...+. . +.+...+..+...|...+++++|.+.|+...... +.+..++..+...+...|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALEL-D-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 445566778888888888887642 1 2234667777788888888888888888876642 234457777788888888
Q ss_pred ChHHHHHHHHHHHH
Q 025612 178 MIDKAMETYETMKA 191 (250)
Q Consensus 178 ~~~~a~~~~~~m~~ 191 (250)
+.++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888888877655
No 102
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.39 E-value=0.047 Score=43.64 Aligned_cols=138 Identities=15% Similarity=0.051 Sum_probs=107.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 177 (250)
+-..+.-.|+-+....+..... ....-|...-+..+....+.|++..|...|.+.... -++|..+||.+--+|-+.|
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~--~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSA--IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHhcccccchHHHHhhhh--ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHcc
Confidence 3344455677777766666653 233446677778999999999999999999998663 5789999999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCchHHHHHHH
Q 025612 178 MIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVY 239 (250)
Q Consensus 178 ~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~~ 239 (250)
+.++|..-|.+..+.-. -+...+|.|--.|.-.|+.+.|+.++......+-.......++.
T Consensus 149 r~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLA 209 (257)
T COG5010 149 RFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLA 209 (257)
T ss_pred ChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 99999999998877521 24466778888888899999999999998877776665555544
No 103
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.36 E-value=0.012 Score=52.55 Aligned_cols=155 Identities=17% Similarity=0.088 Sum_probs=88.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhcCcccHH-H-HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH---HHHHH
Q 025612 65 QAVHAMKLAKSSSKLEEGFQSRICRLLKADLL-D-TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDM---ILMLG 139 (250)
Q Consensus 65 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-~-ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~l---i~~~~ 139 (250)
.+-.+|.-.++.+.|++.|++.+...-.-... + +=..+.....+|.|...|+... ..|...||+. --.|.
T Consensus 426 a~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~~rhYnAwYGlG~vy~ 500 (638)
T KOG1126|consen 426 ALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVDPRHYNAWYGLGTVYL 500 (638)
T ss_pred HhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCCchhhHHHHhhhhhee
Confidence 34667777788888888888866432111111 2 3334445556666766666543 2455555543 34466
Q ss_pred cCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 025612 140 KNKQIAMAEELFCELKKEGLDP-DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218 (250)
Q Consensus 140 ~~~~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~ 218 (250)
|.++++.|+-.|+...+ +.| +.+.-..+...+.+.|+.|+|+++|++.....-+ |+..----...+...+++++|.
T Consensus 501 Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal 577 (638)
T KOG1126|consen 501 KQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEAL 577 (638)
T ss_pred ccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHH
Confidence 77777777777766554 333 3444555555666667777777777665543211 3333334445555666666666
Q ss_pred HHHHHHHhc
Q 025612 219 AVRRDCIQY 227 (250)
Q Consensus 219 ~~~~~m~~~ 227 (250)
+.++++++.
T Consensus 578 ~~LEeLk~~ 586 (638)
T KOG1126|consen 578 QELEELKEL 586 (638)
T ss_pred HHHHHHHHh
Confidence 666666653
No 104
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.36 E-value=0.011 Score=48.73 Aligned_cols=128 Identities=20% Similarity=0.233 Sum_probs=99.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 176 (250)
.+++..-+.+.++.|.++|.+.++...+..++....++|..+ ..++.+.|.++|+...+. +.-+..-|..-|..+.+.
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHh
Confidence 567778888889999999999986444556666666666544 346778899999998765 556778899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 025612 177 GMIDKAMETYETMKASGCTP---HKLTFTILIRNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 177 g~~~~a~~~~~~m~~~g~~p---~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
|+.+.|..+|++.... +.+ ....|...++-=.+.|+++.+.++.+.+.+.
T Consensus 84 ~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 84 NDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp T-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999998876 322 2258999999999999999999999998875
No 105
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.34 E-value=0.019 Score=42.17 Aligned_cols=76 Identities=14% Similarity=0.195 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----hccCCchHHHHHHH
Q 025612 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCI-----QYVEFPERFLEEVY 239 (250)
Q Consensus 165 ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~-----~~g~~pd~~~~~~~ 239 (250)
....++..+...|++++|..+.+...... ..|...|..+|.+|.+.|+...|.++|+.+. +.|+.|+.-+..+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~ 142 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALY 142 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHH
Confidence 45566667778899999999998887742 2366789999999999999999999888774 35999988887776
Q ss_pred Hh
Q 025612 240 QK 241 (250)
Q Consensus 240 ~~ 241 (250)
+.
T Consensus 143 ~~ 144 (146)
T PF03704_consen 143 RE 144 (146)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 106
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.33 E-value=0.029 Score=43.72 Aligned_cols=128 Identities=11% Similarity=0.077 Sum_probs=91.5
Q ss_pred cCChhHHHHHHHHHHHhcCcccHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHcCCC--HH
Q 025612 73 AKSSSKLEEGFQSRICRLLKADLL----DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILM-LGKNKQ--IA 145 (250)
Q Consensus 73 ~~~~~~a~~l~~~m~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~-~~~~~~--~~ 145 (250)
.++.+++...++...+. .|+.. .+-..|...|++++|...|+...+. . .-+...+..+-.+ |...|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-~-P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL-R-GENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHhcCCCCcH
Confidence 34445666666554432 23222 4667788999999999999998752 2 2357778887776 467777 59
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 025612 146 MAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN 207 (250)
Q Consensus 146 ~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~ 207 (250)
+|.+++++..+.. +-+...+..+-..+.+.|++++|...|+.+.+.. .|+..-+. +|++
T Consensus 128 ~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~~-~i~~ 186 (198)
T PRK10370 128 QTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRTQ-LVES 186 (198)
T ss_pred HHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHHH-HHHH
Confidence 9999999988753 2266788888899999999999999999998763 45554443 3344
No 107
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.32 E-value=0.021 Score=45.50 Aligned_cols=129 Identities=13% Similarity=0.055 Sum_probs=91.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCCH-HHHHHHHHHH
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPD-LSLYSDMILMLGKNKQIAMAEELFCELKKEGL-DPDT-RVYTEMIGVY 173 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~-~ty~~li~~~ 173 (250)
.+...+.+.|+++.|...|+.+.+...-.|. ...+..+-..|.+.|++++|...|+++.+..- .|.. .++..+-.++
T Consensus 38 ~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~ 117 (235)
T TIGR03302 38 EEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSN 117 (235)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHH
Confidence 5677888999999999999998753211121 24677788899999999999999999977421 1111 2344444455
Q ss_pred Hhc--------CChHHHHHHHHHHHHCCCCCCHH-HH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 025612 174 LQV--------GMIDKAMETYETMKASGCTPHKL-TF-----------------TILIRNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 174 ~~~--------g~~~~a~~~~~~m~~~g~~p~~~-ty-----------------~~li~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
... |+.++|.+.|+.+... .|+.. .+ ..+-..|.+.|+++.|...+....+.
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 195 (235)
T TIGR03302 118 YNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVEN 195 (235)
T ss_pred HHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 544 7899999999998765 24331 21 13445678889999999999998765
No 108
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.30 E-value=0.084 Score=44.68 Aligned_cols=162 Identities=9% Similarity=-0.022 Sum_probs=101.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCcc-cHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHcCC
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLKA-DLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDL--SLYSDMILMLGKNK 142 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~~-~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~--~~y~~li~~~~~~~ 142 (250)
...+...|++++|...+++..+..-.- ... .+-..+...|++++|...++...+.....|+. ..|-.+...+...|
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G 200 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERG 200 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCC
Confidence 446677899999999999988654221 121 57778889999999999999876422112332 34667888899999
Q ss_pred CHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHhcCChHHHHHH--HHHHHHCCC--CCCHHHHHHHHHHHHhcCCH
Q 025612 143 QIAMAEELFCELKKEGL-DPDTRVY-T--EMIGVYLQVGMIDKAMET--YETMKASGC--TPHKLTFTILIRNLENAGEE 214 (250)
Q Consensus 143 ~~~~A~~~~~~m~~~g~-~p~~~ty-~--~li~~~~~~g~~~~a~~~--~~~m~~~g~--~p~~~ty~~li~~~~~~g~~ 214 (250)
++++|..+|++...... .+..... + .++.-+...|..+.+.+. ......... ......-.....++...|+.
T Consensus 201 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 280 (355)
T cd05804 201 DYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDK 280 (355)
T ss_pred CHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCH
Confidence 99999999999754321 1222222 2 333444444543333332 211111111 11122223567777888999
Q ss_pred HHHHHHHHHHHhcc
Q 025612 215 ELVAAVRRDCIQYV 228 (250)
Q Consensus 215 ~~a~~~~~~m~~~g 228 (250)
+.|.+++..+....
T Consensus 281 ~~a~~~L~~l~~~~ 294 (355)
T cd05804 281 DALDKLLAALKGRA 294 (355)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987643
No 109
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.30 E-value=0.025 Score=49.05 Aligned_cols=145 Identities=19% Similarity=0.213 Sum_probs=78.6
Q ss_pred CChhHHHHHHHHHHHhcC--cccHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHH
Q 025612 74 KSSSKLEEGFQSRICRLL--KADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPD-LSLYSDMILMLGKNKQIAMAEEL 150 (250)
Q Consensus 74 ~~~~~a~~l~~~m~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~~~y~~li~~~~~~~~~~~A~~~ 150 (250)
++..+|.++|++...... .|-....+..=.++..+..|..+++.... . -|- -..|---+.+=-..|++..|..+
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt-~--lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT-I--LPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH-h--cchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 334467777776654322 12222455555566666666666666542 1 121 12233333333345666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025612 151 FCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCI 225 (250)
Q Consensus 151 ~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~ 225 (250)
|+.-.+ ..|+...|++.|+.=.+.+.++.|..+|++..- +.|++.+|--..+-=-++|.+..+..++....
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 665443 256666666666666666666666666666655 33666666555555555666655555555443
No 110
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.26 E-value=0.051 Score=46.94 Aligned_cols=140 Identities=11% Similarity=0.109 Sum_probs=106.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCcccHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLKADLL----DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNK 142 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~ 142 (250)
...|-...++..|.+++.+.. .+.|+.. .|-+.|-+.|+-..|++.+-+-. +-++-++.|..=|-..|....
T Consensus 565 aniye~led~aqaie~~~q~~--slip~dp~ilskl~dlydqegdksqafq~~ydsy--ryfp~nie~iewl~ayyidtq 640 (840)
T KOG2003|consen 565 ANIYELLEDPAQAIELLMQAN--SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSY--RYFPCNIETIEWLAAYYIDTQ 640 (840)
T ss_pred HHHHHHhhCHHHHHHHHHHhc--ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcc--cccCcchHHHHHHHHHHHhhH
Confidence 334444566667777765543 3444332 47777788999999998877653 334557888888888899889
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 025612 143 QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ-VGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213 (250)
Q Consensus 143 ~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~-~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~ 213 (250)
-+++|...|+...- +.|+..-|..||..|.+ .|++.+|+++|.+.... +.-|.....-|++.+...|-
T Consensus 641 f~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 641 FSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 99999999988654 68999999999977775 79999999999998765 56688888999999888774
No 111
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.0052 Score=57.11 Aligned_cols=153 Identities=12% Similarity=0.082 Sum_probs=109.8
Q ss_pred CChhHHHHHHHHHHHhcCccc-HH---HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 025612 74 KSSSKLEEGFQSRICRLLKAD-LL---DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEE 149 (250)
Q Consensus 74 ~~~~~a~~l~~~m~~~~~~~~-~~---~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~ 149 (250)
+..++|+++|.+..+. .|. .. -+--.++..|++.+|..||.++++ .+- -...+|-.+-++|.-+|++..|++
T Consensus 626 k~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrE-a~~-~~~dv~lNlah~~~e~~qy~~AIq 701 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVRE-ATS-DFEDVWLNLAHCYVEQGQYRLAIQ 701 (1018)
T ss_pred HHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHH-HHh-hCCceeeeHHHHHHHHHHHHHHHH
Confidence 3445777777776543 222 22 255567788999999999999986 332 244578899999999999999999
Q ss_pred HHHHHHh-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH------------------Hh
Q 025612 150 LFCELKK-EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL------------------EN 210 (250)
Q Consensus 150 ~~~~m~~-~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~------------------~~ 210 (250)
+|+.-.. ..-.-+...-+.|-+++.++|.+.+|.+...........-...-||..+-.. ..
T Consensus 702 mYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a 781 (1018)
T KOG2002|consen 702 MYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEA 781 (1018)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 9987544 4556678888899999999999999999887776654333345566554322 12
Q ss_pred cCCHHHHHHHHHHHHhccCC
Q 025612 211 AGEEELVAAVRRDCIQYVEF 230 (250)
Q Consensus 211 ~g~~~~a~~~~~~m~~~g~~ 230 (250)
.+..+.|.++|.+|...+-.
T Consensus 782 ~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 782 VKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHHHHHHhcCCC
Confidence 24577788899999877665
No 112
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.24 E-value=0.044 Score=47.52 Aligned_cols=136 Identities=15% Similarity=0.037 Sum_probs=106.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHhcCcccHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCC
Q 025612 68 HAMKLAKSSSKLEEGFQSRICRLLKADLL----DTLTELRRQNELDLALKVFNFVRKEVWYKPD-LSLYSDMILMLGKNK 142 (250)
Q Consensus 68 ~~~~~~~~~~~a~~l~~~m~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~~~y~~li~~~~~~~ 142 (250)
......|+.++|+..++.+.. ..|+.. ...+.+.+.++.++|.+.++.+.. ..|+ ....-++-.+|.+.|
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcC
Confidence 344567999999999999764 344433 577888899999999999999874 3566 555667778999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 025612 143 QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222 (250)
Q Consensus 143 ~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~ 222 (250)
++.+|..+++..... .+-|...|.-|-.+|...|+..++..-..+ .|...|++++|...+.
T Consensus 389 ~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 389 KPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLM 449 (484)
T ss_pred ChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHH
Confidence 999999999987554 566899999999999999999888765544 4556777777777777
Q ss_pred HHHhc
Q 025612 223 DCIQY 227 (250)
Q Consensus 223 ~m~~~ 227 (250)
...+.
T Consensus 450 ~A~~~ 454 (484)
T COG4783 450 RASQQ 454 (484)
T ss_pred HHHHh
Confidence 66654
No 113
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.22 E-value=0.042 Score=47.75 Aligned_cols=158 Identities=14% Similarity=0.145 Sum_probs=116.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcCcccHH--HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 025612 64 IQAVHAMKLAKSSSKLEEGFQSRICRLLKADLL--DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141 (250)
Q Consensus 64 ~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~ 141 (250)
+..+..=.+++.+..|..+|++.+.---..|-. ..+..=-..|++..|.++|+.-.+ ..|+...|++.|+.=.+.
T Consensus 111 lkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~---w~P~eqaW~sfI~fElRy 187 (677)
T KOG1915|consen 111 LKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWME---WEPDEQAWLSFIKFELRY 187 (677)
T ss_pred HHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHh
Confidence 334555667889999999999987543333322 455555578999999999997643 689999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCCHHHHHH
Q 025612 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS-GC-TPHKLTFTILIRNLENAGEEELVAA 219 (250)
Q Consensus 142 ~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~-g~-~p~~~ty~~li~~~~~~g~~~~a~~ 219 (250)
+.++.|..+++...- +.|+..+|--...-=-++|.+..+..+|....+. |- .-+...|.++-.-=.++..++.|.-
T Consensus 188 keieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~ 265 (677)
T KOG1915|consen 188 KEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARF 265 (677)
T ss_pred hHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999876 4699999988888888899999999999887653 21 1122233333333345666777777
Q ss_pred HHHHHHh
Q 025612 220 VRRDCIQ 226 (250)
Q Consensus 220 ~~~~m~~ 226 (250)
+++-..+
T Consensus 266 iykyAld 272 (677)
T KOG1915|consen 266 IYKYALD 272 (677)
T ss_pred HHHHHHH
Confidence 7665544
No 114
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.20 E-value=0.018 Score=49.13 Aligned_cols=104 Identities=15% Similarity=0.088 Sum_probs=72.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 025612 100 TELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179 (250)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 179 (250)
..+...|++++|.+.|++..+. . .-+...|..+-.+|.+.|++++|...+++..... +.+...|..+-.+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~-~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDL-D-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 3455778888888888887642 1 2346677777788888888888888888876642 22556677777888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 025612 180 DKAMETYETMKASGCTPHKLTFTILIRNL 208 (250)
Q Consensus 180 ~~a~~~~~~m~~~g~~p~~~ty~~li~~~ 208 (250)
++|...|++..+. .|+......++..|
T Consensus 87 ~eA~~~~~~al~l--~P~~~~~~~~l~~~ 113 (356)
T PLN03088 87 QTAKAALEKGASL--APGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 8888888887763 46555555444333
No 115
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.19 E-value=0.0044 Score=56.29 Aligned_cols=78 Identities=21% Similarity=0.163 Sum_probs=48.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCcccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH
Q 025612 66 AVHAMKLAKSSSKLEEGFQSRICRLLKADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQI 144 (250)
Q Consensus 66 ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~ 144 (250)
.+.+-...++|++|+.+++.+.......... .+-+-|+..|+++.|+++|-+-- .++--|..|+++|++
T Consensus 738 aieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccH
Confidence 3444555666777777777666655544444 45666777777777777765331 256667777777777
Q ss_pred HHHHHHHHH
Q 025612 145 AMAEELFCE 153 (250)
Q Consensus 145 ~~A~~~~~~ 153 (250)
+.|.++-.+
T Consensus 808 ~da~kla~e 816 (1636)
T KOG3616|consen 808 EDAFKLAEE 816 (1636)
T ss_pred HHHHHHHHH
Confidence 777766544
No 116
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.085 Score=42.19 Aligned_cols=83 Identities=16% Similarity=0.187 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 025612 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185 (250)
Q Consensus 106 ~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~ 185 (250)
|++++|.++++.+.++ . +-|.++|--=+-..-..|+--+|++-+++..+. +.-|...|--+-..|...|++++|.-.
T Consensus 100 ~~~~~A~e~y~~lL~d-d-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 100 GNYKEAIEYYESLLED-D-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hchhhHHHHHHHHhcc-C-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 4444455555444421 1 223444433333333334434444444443332 333455555555555555555555555
Q ss_pred HHHHHH
Q 025612 186 YETMKA 191 (250)
Q Consensus 186 ~~~m~~ 191 (250)
+++|.-
T Consensus 177 lEE~ll 182 (289)
T KOG3060|consen 177 LEELLL 182 (289)
T ss_pred HHHHHH
Confidence 555444
No 117
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.085 Score=45.69 Aligned_cols=119 Identities=16% Similarity=0.152 Sum_probs=85.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCcc-cHH---HHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcC
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLKA-DLL---DTLTELRRQNELDLALKVFNFVRKEVWYKP-DLSLYSDMILMLGKN 141 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~~-~~~---~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~-~~~~y~~li~~~~~~ 141 (250)
-+.|....+.+.|.+-++..++ +-| |.. .|=.+|.-.+-+.=|+-.|++..+ ++| |...|.+|=.+|.+.
T Consensus 371 GHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl 445 (559)
T KOG1155|consen 371 GHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKL 445 (559)
T ss_pred hHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHh
Confidence 4555555555555555555442 222 222 366666666666777777776653 344 689999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 025612 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA 191 (250)
Q Consensus 142 ~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 191 (250)
++.++|.++|.....-| ..+...|..|-+.|-+.++.++|...|..-.+
T Consensus 446 ~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 446 NRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred ccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999987754 22558899999999999999999999887654
No 118
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.13 E-value=0.0047 Score=45.45 Aligned_cols=116 Identities=15% Similarity=0.081 Sum_probs=71.0
Q ss_pred HHhcCChhHHHHHHHHHHH---hcCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 025612 70 MKLAKSSSKLEEGFQSRIC---RLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAM 146 (250)
Q Consensus 70 ~~~~~~~~~a~~l~~~m~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~ 146 (250)
....++.+.+...+.+... ..+-|+.. ...-+.....-++... ......++..+...|++++
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~-------~~~W~~~~r~~l~~~~--------~~~~~~l~~~~~~~~~~~~ 80 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLD-------DEEWVEPERERLRELY--------LDALERLAEALLEAGDYEE 80 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGT-------TSTTHHHHHHHHHHHH--------HHHHHHHHHHHHHTT-HHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCC-------ccHHHHHHHHHHHHHH--------HHHHHHHHHHHHhccCHHH
Confidence 3455677777777777753 22222221 1223333334444432 3467777888888899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----HCCCCCCHHHH
Q 025612 147 AEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK-----ASGCTPHKLTF 201 (250)
Q Consensus 147 A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~ty 201 (250)
|..+...+... -+.|...|-.+|.+|...|+..+|.++|+.+. +.|+.|+..|-
T Consensus 81 a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 81 ALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 99988887764 23467888899999999999999999988764 24888888663
No 119
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.13 E-value=0.024 Score=42.77 Aligned_cols=97 Identities=14% Similarity=0.083 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 025612 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP--DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTIL 204 (250)
Q Consensus 127 ~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p--~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l 204 (250)
....|..+...+...|++++|...|++.....-.| ...+|..+-..|.+.|+.++|...++...... .....++..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 35667777778888899999999888876542222 23578888888888999999999988877642 2234556666
Q ss_pred HHHHH-------hcCCHHHHHHHHHHH
Q 025612 205 IRNLE-------NAGEEELVAAVRRDC 224 (250)
Q Consensus 205 i~~~~-------~~g~~~~a~~~~~~m 224 (250)
...+. ..|+++.|...+++-
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 66666 778888777666654
No 120
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.10 E-value=0.0059 Score=49.40 Aligned_cols=81 Identities=19% Similarity=0.207 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 025612 144 IAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV----------------GMIDKAMETYETMKASGCTPHKLTFTILIRN 207 (250)
Q Consensus 144 ~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~----------------g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~ 207 (250)
++-....+..|.+-|+..|..+|+.||+.+=+- ..-+-+.+++++|...|+.||..+-..|+++
T Consensus 88 veFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~ 167 (406)
T KOG3941|consen 88 VEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNA 167 (406)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHH
Confidence 344444445555555555555555555543332 1234467777777777777777777777777
Q ss_pred HHhcCCH-HHHHHHHHHH
Q 025612 208 LENAGEE-ELVAAVRRDC 224 (250)
Q Consensus 208 ~~~~g~~-~~a~~~~~~m 224 (250)
+.+.+-. .+..++.--|
T Consensus 168 FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 168 FGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hccccccHHHHHHHHHhh
Confidence 7776652 3334443334
No 121
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.09 E-value=0.0079 Score=43.19 Aligned_cols=57 Identities=12% Similarity=0.111 Sum_probs=49.4
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcC
Q 025612 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE-GLDPDTRVYTEMIGVYLQVG 177 (250)
Q Consensus 121 ~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~ty~~li~~~~~~g 177 (250)
...+.|+..+..+++.+|+..|++..|+++.+...+. +++.+..+|..|+.-....-
T Consensus 45 ~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 45 SSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred CCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 4667899999999999999999999999999998775 89989999999997665543
No 122
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.023 Score=50.05 Aligned_cols=141 Identities=16% Similarity=0.076 Sum_probs=107.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCcccHHHHHH----HHHHcCCHHHHHHHHHHHH---HhCCC-C-CCHHHHHHHHH
Q 025612 66 AVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLT----ELRRQNELDLALKVFNFVR---KEVWY-K-PDLSLYSDMIL 136 (250)
Q Consensus 66 ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~ll~----~~~~~~~~~~a~~~~~~m~---~~~g~-~-~~~~~y~~li~ 136 (250)
+---|.+.++.+.|.+.|.+.. ++-|...-+++ .....+.+.+|...|.... ++.+- . --..+++.|=+
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~--ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH 463 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQAL--AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGH 463 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHH--hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHH
Confidence 4555778899999999999865 44454332222 2336788999999998764 11111 1 13456888999
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 025612 137 MLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211 (250)
Q Consensus 137 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 211 (250)
+|.+.+++++|+..|++-... .+-|..||+++--.|...|+++.|.+.|.+-.- +.||..+...++..+...
T Consensus 464 ~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 464 AYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHHh
Confidence 999999999999999987664 355889999999999999999999999987665 789999988888876654
No 123
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.04 E-value=0.19 Score=45.06 Aligned_cols=126 Identities=15% Similarity=0.137 Sum_probs=98.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPD-LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 176 (250)
+-..|-..|++++|+++.+...+. .|+ +..|..--+.|-+.|++.+|.+.+++..+.. .-|...=+-.+..+.++
T Consensus 200 lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 200 LAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHC
Confidence 344456889999999999988753 566 7788899999999999999999999887642 12566667778899999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHH--------HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 025612 177 GMIDKAMETYETMKASGCTPHKLTF--------TILIRNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 177 g~~~~a~~~~~~m~~~g~~p~~~ty--------~~li~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
|++++|.+++......+..|-...+ .-.-.+|.+.|++..|.+-|....+.
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999887764443332 34457888999998888777766543
No 124
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.98 E-value=0.0058 Score=38.38 Aligned_cols=62 Identities=24% Similarity=0.270 Sum_probs=30.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 025612 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM 169 (250)
Q Consensus 104 ~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~l 169 (250)
..|++++|.++|+.+.+.. +-+...+-.+..+|.+.|++++|..+++.+... .|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 4455555555555554321 114444455555555555555555555555443 3443444333
No 125
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.96 E-value=0.11 Score=48.31 Aligned_cols=163 Identities=15% Similarity=0.105 Sum_probs=120.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcCcccHH-----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 025612 64 IQAVHAMKLAKSSSKLEEGFQSRICRLLKADLL-----DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILML 138 (250)
Q Consensus 64 ~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~ 138 (250)
+.+.-++......+....+........+.|+.. .+-+++.+.|++++|..+|..+.. .-...+.+.|-.+-.+|
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~-~~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN-REGYQNAFVWYKLARCY 459 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc-CccccchhhhHHHHHHH
Confidence 445556666655555555566566666544332 588999999999999999999985 33344688999999999
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHH
Q 025612 139 GKNKQIAMAEELFCELKKEGLDPD-TRVYTEMIGVYLQVGMIDKAMETYETMK--------ASGCTPHKLTFTILIRNLE 209 (250)
Q Consensus 139 ~~~~~~~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~~~~~m~--------~~g~~p~~~ty~~li~~~~ 209 (250)
...|..++|...|+..... .|+ .-.--+|-.-|-+.|+.++|.+++..|. ..+..|+...--.....+.
T Consensus 460 ~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 9999999999999998774 333 2223344456678999999999999954 3356677777777788888
Q ss_pred hcCCHHHHHHHHHHHHhccC
Q 025612 210 NAGEEELVAAVRRDCIQYVE 229 (250)
Q Consensus 210 ~~g~~~~a~~~~~~m~~~g~ 229 (250)
..|+.++-..+-.+|...+.
T Consensus 538 ~~gk~E~fi~t~~~Lv~~~~ 557 (895)
T KOG2076|consen 538 QVGKREEFINTASTLVDDFL 557 (895)
T ss_pred HhhhHHHHHHHHHHHHHHHH
Confidence 99999998777777766443
No 126
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.96 E-value=0.13 Score=50.11 Aligned_cols=160 Identities=15% Similarity=0.118 Sum_probs=122.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH-hcCcccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 025612 66 AVHAMKLAKSSSKLEEGFQSRIC-RLLKADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ 143 (250)
Q Consensus 66 ll~~~~~~~~~~~a~~l~~~m~~-~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~ 143 (250)
+..-|.+..++++|.++++.|.+ -|-.+.+. ...+.+.+.++-++|..++.+..+..--.-.+....-.+..=-+.|+
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 56667788899999999999975 44344444 68899999999999999999876531111134444455555568999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHH
Q 025612 144 IAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK--LTFTILIRNLENAGEEELVAAVR 221 (250)
Q Consensus 144 ~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~ty~~li~~~~~~g~~~~a~~~~ 221 (250)
.+.+..+|+..... .+--.-.|+..|.+=.++|+.+.+..+|++....++.|-. .-|.-.+..=-..|+-+.++.+=
T Consensus 1616 aeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred chhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHH
Confidence 99999999998765 2335678999999999999999999999999999887754 66777777777788877777665
Q ss_pred HHHHh
Q 025612 222 RDCIQ 226 (250)
Q Consensus 222 ~~m~~ 226 (250)
....+
T Consensus 1695 arA~E 1699 (1710)
T KOG1070|consen 1695 ARAKE 1699 (1710)
T ss_pred HHHHH
Confidence 55443
No 127
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.94 E-value=0.05 Score=46.49 Aligned_cols=92 Identities=10% Similarity=0.051 Sum_probs=76.8
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCH
Q 025612 136 LMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP-HKLTFTILIRNLENAGEE 214 (250)
Q Consensus 136 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~ 214 (250)
..+...|++++|.++|++..... +-+...|..+-.+|.+.|++++|+..+++..+. .| +...|..+-.+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCH
Confidence 44567899999999999987742 235677888889999999999999999999875 34 567888889999999999
Q ss_pred HHHHHHHHHHHhccCC
Q 025612 215 ELVAAVRRDCIQYVEF 230 (250)
Q Consensus 215 ~~a~~~~~~m~~~g~~ 230 (250)
+.|.+.|+...+..-.
T Consensus 87 ~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 87 QTAKAALEKGASLAPG 102 (356)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999998876543
No 128
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.91 E-value=0.0053 Score=38.56 Aligned_cols=62 Identities=21% Similarity=0.252 Sum_probs=34.2
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 025612 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTIL 204 (250)
Q Consensus 140 ~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l 204 (250)
..|++++|.++|++..... +-+...+-.+..+|.+.|++++|..+++.+... .|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 4566666666666665431 114555555666666666666666666666553 3554444433
No 129
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.048 Score=47.49 Aligned_cols=120 Identities=14% Similarity=0.132 Sum_probs=81.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-----CCCCCHH--HHHHHHHHHH
Q 025612 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE-----GLDPDTR--VYTEMIGVYL 174 (250)
Q Consensus 102 ~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~-----g~~p~~~--ty~~li~~~~ 174 (250)
..|.+++++++..|++..+ .++-....||-.-..+...++++.|.+-|+.-.+. ++..+.. ..-+++-.--
T Consensus 438 ~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw 515 (606)
T KOG0547|consen 438 LYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW 515 (606)
T ss_pred HHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch
Confidence 3477788888888888864 34555778888888888888888888888765432 2222222 2223332223
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 175 QVGMIDKAMETYETMKASGCTPHK-LTFTILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 175 ~~g~~~~a~~~~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
+ ++++.|.++++.-.+ +.|-. ..|-+|-..-...|++++|.++|++-..
T Consensus 516 k-~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 516 K-EDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred h-hhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3 778888888877766 33433 5688888888888999999999877543
No 130
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.90 E-value=0.084 Score=37.56 Aligned_cols=102 Identities=19% Similarity=0.107 Sum_probs=61.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCcccHH-----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHH
Q 025612 66 AVHAMKLAKSSSKLEEGFQSRICRLLKADLL-----DTLTELRRQNELDLALKVFNFVRKEVWYKPD----LSLYSDMIL 136 (250)
Q Consensus 66 ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~----~~~y~~li~ 136 (250)
.-.++-..|+.++|..+|++....|...... .+-..+-..|++++|..+++....+. |+ ....-.+--
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~---p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF---PDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHHH
Confidence 3445556688888888888887777665433 35566667788888888888776431 32 111111223
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 025612 137 MLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYL 174 (250)
Q Consensus 137 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~ 174 (250)
++...|+.++|...+-...- ++...|.--|..|.
T Consensus 84 ~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 55677888887777655443 24445555555554
No 131
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.90 E-value=0.12 Score=39.17 Aligned_cols=81 Identities=15% Similarity=0.174 Sum_probs=59.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPD--LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP-DTRVYTEMIGVYL 174 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~--~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~ 174 (250)
+-..+...|++++|...|++..+ ....+. ...|..+-..|.+.|++++|...+++.... .| +...+..+...|.
T Consensus 41 lg~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 41 DGMSAQADGEYAEALENYEEALK-LEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-HhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHH
Confidence 55567788999999999998864 222221 467888889999999999999999987764 33 4556666677777
Q ss_pred hcCChHH
Q 025612 175 QVGMIDK 181 (250)
Q Consensus 175 ~~g~~~~ 181 (250)
..|+...
T Consensus 118 ~~g~~~~ 124 (172)
T PRK02603 118 KRGEKAE 124 (172)
T ss_pred HcCChHh
Confidence 7776433
No 132
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.85 E-value=0.042 Score=41.42 Aligned_cols=91 Identities=11% Similarity=0.015 Sum_probs=62.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKP-DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYL-- 174 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~-~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~-- 174 (250)
+...+...|++++|...|....+...-.+ ...+|..+-..|...|++++|.+.++...... +....+++.+...|.
T Consensus 41 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i~~~~ 119 (168)
T CHL00033 41 DGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVICHYR 119 (168)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHh
Confidence 44556678999999999998864221111 23578888888999999999999998877641 223455666666666
Q ss_pred -----hcCChHHHHHHHHHH
Q 025612 175 -----QVGMIDKAMETYETM 189 (250)
Q Consensus 175 -----~~g~~~~a~~~~~~m 189 (250)
..|++++|...+++-
T Consensus 120 ~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 120 GEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred hHHHHHcccHHHHHHHHHHH
Confidence 778888776666543
No 133
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.80 E-value=0.2 Score=44.26 Aligned_cols=144 Identities=16% Similarity=0.166 Sum_probs=109.8
Q ss_pred HHHHHHHHHHH-hcCcccHH--HHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 025612 78 KLEEGFQSRIC-RLLKADLL--DTLTELRRQNELDLALKVFNFVRKEVWYKP-DLSLYSDMILMLGKNKQIAMAEELFCE 153 (250)
Q Consensus 78 ~a~~l~~~m~~-~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~-~~~~y~~li~~~~~~~~~~~A~~~~~~ 153 (250)
.....+++... ....|+.. .+++..-|...++.|..+|.+.++ .+..+ ++++++++|..||. ++.+-|.++|+-
T Consensus 349 ~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~-~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeL 426 (656)
T KOG1914|consen 349 KVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARE-DKRTRHHVFVAAALMEYYCS-KDKETAFRIFEL 426 (656)
T ss_pred hhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhh-ccCCcchhhHHHHHHHHHhc-CChhHHHHHHHH
Confidence 34444444432 22344444 588888889999999999999986 56566 89999999998885 666899999986
Q ss_pred -HHhCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 154 -LKKEGLDPDTRV-YTEMIGVYLQVGMIDKAMETYETMKASGCTPHK--LTFTILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 154 -m~~~g~~p~~~t-y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~ty~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
|+.. +|... -..-+.-+...++-..|..+|++....++.||. ..|..+|+-=+.-|+...+.++-+.+..
T Consensus 427 GLkkf---~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 427 GLKKF---GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHhc---CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4443 34433 466788888899999999999999888777655 7899999999999999999888777654
No 134
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.78 E-value=0.2 Score=46.60 Aligned_cols=90 Identities=14% Similarity=-0.004 Sum_probs=64.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCcccHH-------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLKADLL-------DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-------~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~ 139 (250)
...|.+.|+..+|..-|.++....-+.|.. .+++.+...++-+.|.+.++......+-..+..++|+++..|.
T Consensus 248 s~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l 327 (895)
T KOG2076|consen 248 SSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFL 327 (895)
T ss_pred HHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHH
Confidence 455777788888888888876544333332 3566677777778888888876543444556777888888888
Q ss_pred cCCCHHHHHHHHHHHHh
Q 025612 140 KNKQIAMAEELFCELKK 156 (250)
Q Consensus 140 ~~~~~~~A~~~~~~m~~ 156 (250)
+...++.|......+..
T Consensus 328 ~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 328 KNKQSDKALMKIVDDRN 344 (895)
T ss_pred HhHHHHHhhHHHHHHhc
Confidence 88888888888777765
No 135
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.75 E-value=0.13 Score=45.51 Aligned_cols=121 Identities=12% Similarity=0.158 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 025612 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP-DTRVYTEMIGVYLQVGMIDKAMETY 186 (250)
Q Consensus 108 ~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~~ 186 (250)
.+.....++.+.....+.|+ .+|-..|+.--|..-++.|..+|.+..+.+..+ +.+.++++|.-||. ++..-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 55566667766554555665 578889999999999999999999999998888 88999999999887 7789999999
Q ss_pred HH-HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCch
Q 025612 187 ET-MKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232 (250)
Q Consensus 187 ~~-m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd 232 (250)
+- |+..|-.| .--...++-+++.++-..+..+|+.....++.||
T Consensus 425 eLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 425 ELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred HHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 86 66655433 4445677778888888889999998887777766
No 136
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.72 E-value=0.053 Score=44.21 Aligned_cols=99 Identities=14% Similarity=0.099 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHH
Q 025612 128 LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT----RVYTEMIGVYLQVGMIDKAMETYETMKASG--CTPHKLTF 201 (250)
Q Consensus 128 ~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~ty 201 (250)
...|+..+..+.+.|++++|...|+.+... .|+. ..+-.+-..|...|++++|...|+.+.+.- -......+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 456777777777789999999999999875 3443 466677889999999999999999998641 11123445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 025612 202 TILIRNLENAGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 202 ~~li~~~~~~g~~~~a~~~~~~m~~~g 228 (250)
-.+...+...|+.+.|.++++...+.-
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 555667788999999999999887653
No 137
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.69 E-value=0.031 Score=46.90 Aligned_cols=103 Identities=18% Similarity=0.133 Sum_probs=82.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 176 (250)
..|.-|...|+...|.++-.+. + .|+..-|-.-|++|+..++|++-.++-.. +-.++-|-.++..|.+.
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~F-k----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEF-K----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHc-C----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 4677788889988888887766 2 47888999999999999999987775432 22558899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 025612 177 GMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220 (250)
Q Consensus 177 g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~ 220 (250)
|...+|..++.. .++..-+..|.++|++.+|.+.
T Consensus 251 ~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 251 GNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHH
Confidence 999999988877 2335677888899998888665
No 138
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.073 Score=49.87 Aligned_cols=121 Identities=14% Similarity=0.180 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 025612 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186 (250)
Q Consensus 107 ~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~ 186 (250)
..++|+++|.+..+ . -+-|...-|-+=-.++..|++++|.++|.+..+... -+..+|-.+-.+|...|++..|.++|
T Consensus 627 ~~~KAlq~y~kvL~-~-dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 627 HQEKALQLYGKVLR-N-DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHHh-c-CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHH
Confidence 45677777777653 2 133555556666667777888888888888777532 23356777778888888888888888
Q ss_pred HHH-HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 025612 187 ETM-KASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEF 230 (250)
Q Consensus 187 ~~m-~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 230 (250)
+.. +..+-.-+....+.|-+++-++|++.+|.+..-...+....
T Consensus 704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 764 44455557777888888888888888887776665554433
No 139
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.15 Score=45.48 Aligned_cols=149 Identities=13% Similarity=0.139 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHHH----HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH--
Q 025612 61 SEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLD----TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDM-- 134 (250)
Q Consensus 61 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~----ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~l-- 134 (250)
+..+.=++...+.+++++|....+++...+ |+... =+-++...+++++|+.+.+.- + -..++|..
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~----~---~~~~~~~~~f 83 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKN----G---ALLVINSFFF 83 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhc----c---hhhhcchhhH
Confidence 355555788888999999999999998766 44442 445566889999998554422 1 12334444
Q ss_pred HHHHH--cCCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCC------------------
Q 025612 135 ILMLG--KNKQIAMAEELFCELKKEGLDPDTR-VYTEMIGVYLQVGMIDKAMETYETMKASG------------------ 193 (250)
Q Consensus 135 i~~~~--~~~~~~~A~~~~~~m~~~g~~p~~~-ty~~li~~~~~~g~~~~a~~~~~~m~~~g------------------ 193 (250)
=++|| +.++.++|...++ |+.++.. +-..=-..+.+.|++++|+++|+.+.+++
T Consensus 84 EKAYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~ 158 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA 158 (652)
T ss_pred HHHHHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 57777 6789999999888 3444443 44444567788999999999999995433
Q ss_pred ----------CCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHH
Q 025612 194 ----------CTPHKLTFTILIRN---LENAGEEELVAAVRRDC 224 (250)
Q Consensus 194 ----------~~p~~~ty~~li~~---~~~~g~~~~a~~~~~~m 224 (250)
..| ..||..+.+- ++..|++.+|++++...
T Consensus 159 l~~~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 159 LQVQLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKA 201 (652)
T ss_pred hhHHHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 122 2256666543 45789999999999887
No 140
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.59 E-value=0.26 Score=46.88 Aligned_cols=147 Identities=7% Similarity=0.006 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHH----HHHHHHHHcCCHHHH------------------HHHHHHHH
Q 025612 62 EAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLL----DTLTELRRQNELDLA------------------LKVFNFVR 119 (250)
Q Consensus 62 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~----~ll~~~~~~~~~~~a------------------~~~~~~m~ 119 (250)
....++..+...+++++|.++.+...+ ..|+.. .+-..+...++.+++ ..+...|.
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i~ 110 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKIL 110 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHHH
Confidence 455678888899999999999986543 223222 111133334444333 33333333
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 025612 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199 (250)
Q Consensus 120 ~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 199 (250)
+ . .-+...+-.+-.+|-+.|+.++|..+++++.+.. +-|...-|.+-..|... ++++|.+++......
T Consensus 111 ~-~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~------- 178 (906)
T PRK14720 111 L-Y--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR------- 178 (906)
T ss_pred h-h--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-------
Confidence 2 1 1233566677788888899999999999998865 45778888998999988 999999988876654
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 025612 200 TFTILIRNLENAGEEELVAAVRRDCIQYVEF 230 (250)
Q Consensus 200 ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 230 (250)
|....++..+.++|.++.+....
T Consensus 179 --------~i~~kq~~~~~e~W~k~~~~~~~ 201 (906)
T PRK14720 179 --------FIKKKQYVGIEEIWSKLVHYNSD 201 (906)
T ss_pred --------HHhhhcchHHHHHHHHHHhcCcc
Confidence 66666777777777777766544
No 141
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.58 E-value=0.015 Score=36.14 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=7.9
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 025612 169 MIGVYLQVGMIDKAMETYETM 189 (250)
Q Consensus 169 li~~~~~~g~~~~a~~~~~~m 189 (250)
+-..+...|++++|...|++.
T Consensus 37 lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 37 LGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 333333444444444444333
No 142
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.56 E-value=0.33 Score=39.98 Aligned_cols=179 Identities=16% Similarity=0.186 Sum_probs=110.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhcC----cccHH---HHHHHHHHcCCHHHHHHHHHHHHH---hCCC-CCCHHHHHH
Q 025612 65 QAVHAMKLAKSSSKLEEGFQSRICRLL----KADLL---DTLTELRRQNELDLALKVFNFVRK---EVWY-KPDLSLYSD 133 (250)
Q Consensus 65 ~ll~~~~~~~~~~~a~~l~~~m~~~~~----~~~~~---~ll~~~~~~~~~~~a~~~~~~m~~---~~g~-~~~~~~y~~ 133 (250)
.....|...+++++|.+.|.+...... ..... .-...+.+..++++|.+.++...+ ..|- ..-...+..
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~ 119 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKE 119 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 356677788999999999998753222 11111 122334455588888888887532 2331 112556777
Q ss_pred HHHHHHcC-CCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----CCCHH-H
Q 025612 134 MILMLGKN-KQIAMAEELFCELKK----EGLDPD--TRVYTEMIGVYLQVGMIDKAMETYETMKASGC-----TPHKL-T 200 (250)
Q Consensus 134 li~~~~~~-~~~~~A~~~~~~m~~----~g~~p~--~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~-----~p~~~-t 200 (250)
+-..|-.. |+++.|.+.|++-.+ .| .+. ..++..+...+.+.|++++|.++|++....-. +++.. .
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 88888888 999999999987543 23 111 34567778889999999999999999876422 23332 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc--cCCch---HHHHHHHHhhhc
Q 025612 201 FTILIRNLENAGEEELVAAVRRDCIQY--VEFPE---RFLEEVYQKHRK 244 (250)
Q Consensus 201 y~~li~~~~~~g~~~~a~~~~~~m~~~--g~~pd---~~~~~~~~~~~~ 244 (250)
|-..+-.+...||+..|.+.++..... ++... .++..+....-.
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE 247 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence 333344666679999999999998754 34322 445554444433
No 143
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.54 E-value=0.21 Score=44.85 Aligned_cols=117 Identities=19% Similarity=0.156 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHc----C----CCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc
Q 025612 107 ELDLALKVFNFVRKEVWYKPD-LSLYSDMILMLGK----N----KQIAMAEELFCELKKE-GLDPDTRVYTEMIGVYLQV 176 (250)
Q Consensus 107 ~~~~a~~~~~~m~~~~g~~~~-~~~y~~li~~~~~----~----~~~~~A~~~~~~m~~~-g~~p~~~ty~~li~~~~~~ 176 (250)
..+.|..+|++..+ ..|+ ...|..+..+|.. . .++..+.+........ ....+...|.++--.+...
T Consensus 357 ~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~ 433 (517)
T PRK10153 357 SLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVK 433 (517)
T ss_pred HHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhc
Confidence 36788999998875 3565 3344433332221 1 2244555555554332 2344667888886666678
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 025612 177 GMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 177 g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g 228 (250)
|++++|...+++....+ |+...|..+-+.+...|+.++|.+.+.+..+..
T Consensus 434 g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 434 GKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred CCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999999988865 788899999999999999999999998876543
No 144
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.53 E-value=0.21 Score=41.53 Aligned_cols=152 Identities=13% Similarity=0.148 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHHhcCcccHHHHHHHHHH-----cC----CHHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHcCCC--
Q 025612 77 SKLEEGFQSRICRLLKADLLDTLTELRR-----QN----ELDLALKVFNFVRKEVWY--KPDLSLYSDMILMLGKNKQ-- 143 (250)
Q Consensus 77 ~~a~~l~~~m~~~~~~~~~~~ll~~~~~-----~~----~~~~a~~~~~~m~~~~g~--~~~~~~y~~li~~~~~~~~-- 143 (250)
.+...+++.+.+.|+.-+..+.+.++.- .. ....|..+|+.|++.+.+ .++-.++.+|+.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3788889999999988766644443332 22 356899999999875543 3345566666555 4444
Q ss_pred --HHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc-CC--hHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCC---
Q 025612 144 --IAMAEELFCELKKEGLDPDTR-VYTEMIGVYLQV-GM--IDKAMETYETMKASGCTPHKLTFTILIR-NLENAGE--- 213 (250)
Q Consensus 144 --~~~A~~~~~~m~~~g~~p~~~-ty~~li~~~~~~-g~--~~~a~~~~~~m~~~g~~p~~~ty~~li~-~~~~~g~--- 213 (250)
.+.++.+|+.+...|+..+-. .+-+-|-+++.. .. ..++.++++.+++.|+++....|..+== ++...+.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~ 236 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKI 236 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHH
Confidence 356788999999988877533 333334343332 22 4578899999999999988877765422 2223333
Q ss_pred HHHHHHHHHHHHh-ccCC
Q 025612 214 EELVAAVRRDCIQ-YVEF 230 (250)
Q Consensus 214 ~~~a~~~~~~m~~-~g~~ 230 (250)
++...++.+.+.+ .|..
T Consensus 237 ~~~i~ev~~~L~~~k~~~ 254 (297)
T PF13170_consen 237 VEEIKEVIDELKEQKGFG 254 (297)
T ss_pred HHHHHHHHHHHhhCcccC
Confidence 4445555555553 3433
No 145
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.52 E-value=0.034 Score=45.21 Aligned_cols=87 Identities=14% Similarity=0.265 Sum_probs=68.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC----------------HHHHHHHHHHHHhCCCCCCHHHHH
Q 025612 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ----------------IAMAEELFCELKKEGLDPDTRVYT 167 (250)
Q Consensus 104 ~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~----------------~~~A~~~~~~m~~~g~~p~~~ty~ 167 (250)
+.++++-....+..|. +.|+.-|..+|+.||+.+=+..- -+=+.+++++|+..|+.||..+-.
T Consensus 84 ~R~HveFIy~ALk~m~-eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~ 162 (406)
T KOG3941|consen 84 GRTHVEFIYTALKYMK-EYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIED 162 (406)
T ss_pred ccchHHHHHHHHHHHH-HhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHH
Confidence 3466777777778886 59999999999999998866432 144789999999999999999999
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHHH
Q 025612 168 EMIGVYLQVGM-IDKAMETYETMKA 191 (250)
Q Consensus 168 ~li~~~~~~g~-~~~a~~~~~~m~~ 191 (250)
.||++|++.+- ..+.+++.-+|-+
T Consensus 163 ~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 163 ILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHhccccccHHHHHHHHHhhhh
Confidence 99999999775 3456666666644
No 146
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.43 E-value=0.08 Score=45.96 Aligned_cols=64 Identities=14% Similarity=-0.002 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 025612 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT----RVYTEMIGVYLQVGMIDKAMETYETMKAS 192 (250)
Q Consensus 127 ~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 192 (250)
+...|+.+-.+|.+.|++++|+..|++-.+. .|+. .+|..+-.+|.+.|+.++|...+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566666666677777777777777665542 3543 34666677777777777777777666653
No 147
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.39 E-value=0.038 Score=50.52 Aligned_cols=110 Identities=15% Similarity=0.257 Sum_probs=80.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 177 (250)
-|.+-.....|.+|..+++.++. .. .-..-|.-+-+-|+..|+++.|+++|-+-. .++--|.+|.++|
T Consensus 738 aieaai~akew~kai~ildniqd-qk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQD-QK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhh-hc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccc
Confidence 44455567788899999998864 22 223457788899999999999999997642 3567789999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 025612 178 MIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221 (250)
Q Consensus 178 ~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~ 221 (250)
+|++|.++-.+.. |-+.....|-+--.-+-+.|++.+|++++
T Consensus 806 kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 806 KWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred cHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 9999998865543 33345566666666677788888887765
No 148
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.38 E-value=0.075 Score=48.33 Aligned_cols=157 Identities=13% Similarity=0.087 Sum_probs=80.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCcccHH-HHHHHHHHcCCHHHHHHHHHHHHHh--CC-------------------
Q 025612 66 AVHAMKLAKSSSKLEEGFQSRICRLLKADLL-DTLTELRRQNELDLALKVFNFVRKE--VW------------------- 123 (250)
Q Consensus 66 ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~--~g------------------- 123 (250)
++-+|+..|+..+|..+..+-.+..-.|... .+.+...+..-+++|+++++..... .-
T Consensus 430 vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle 509 (777)
T KOG1128|consen 430 VILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLE 509 (777)
T ss_pred HHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHH
Confidence 4666777777777777766665532222222 2333333333344444444443210 00
Q ss_pred ----C-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 025612 124 ----Y-KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD-TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH 197 (250)
Q Consensus 124 ----~-~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 197 (250)
+ .....+|-.+=.+..+.++++.|.+.|..-.. ..|| ...||.+-.+|.+.|+-.+|...+++-.+.+ .-+
T Consensus 510 ~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~ 586 (777)
T KOG1128|consen 510 RSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQH 586 (777)
T ss_pred HHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCC
Confidence 0 00122333333333445555566655555433 2333 4456777777777776667766666665554 233
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025612 198 KLTFTILIRNLENAGEEELVAAVRRDCI 225 (250)
Q Consensus 198 ~~ty~~li~~~~~~g~~~~a~~~~~~m~ 225 (250)
...|..-+-.....|.+++|.+.+..+.
T Consensus 587 w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 587 WQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred CeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 4455555556666666777666666654
No 149
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.085 Score=44.28 Aligned_cols=130 Identities=14% Similarity=0.130 Sum_probs=91.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHh
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI-GVYLQ 175 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li-~~~~~ 175 (250)
++-..+.-..+++++.-.++.+. +--..-|.+-|| +-.+++..|++.+|+++|-......+ .|..+|-+++ ++|.+
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~-sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIE-SYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIR 440 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHh
Confidence 56666677778888888887774 344445555555 66788889999999999977654332 3667776665 78889
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhccCCch
Q 025612 176 VGMIDKAMETYETMKASGCTPHKLT-FTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232 (250)
Q Consensus 176 ~g~~~~a~~~~~~m~~~g~~p~~~t-y~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd 232 (250)
+|..+-|+++|-.+...+ +..+ ...+-+-|-+++.+--|.+.|++++...-.|.
T Consensus 441 nkkP~lAW~~~lk~~t~~---e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 441 NKKPQLAWDMMLKTNTPS---ERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE 495 (557)
T ss_pred cCCchHHHHHHHhcCCch---hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence 999999998876665432 3333 33444667788888888888888877655554
No 150
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.34 E-value=0.03 Score=34.75 Aligned_cols=57 Identities=19% Similarity=0.258 Sum_probs=48.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 025612 169 MIGVYLQVGMIDKAMETYETMKASGCTP-HKLTFTILIRNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 169 li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
+-..+.+.|++++|...|++..+.. | +...+..+-.++...|++++|.+.|+...+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3467889999999999999999875 5 6678888889999999999999999998753
No 151
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.34 E-value=0.39 Score=45.68 Aligned_cols=171 Identities=8% Similarity=-0.047 Sum_probs=94.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCcccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHH
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLKADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIA 145 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~ 145 (250)
+.......++..+..+...+...+-..... .+-.+|-+.|+.++|..+++++.+ .. .-|+...|.+-..|+.. +++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~-~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK-AD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh-cC-cccHHHHHHHHHHHHHh-hHH
Confidence 333444444444444444444433222222 567777788888888888888875 33 44677788888888888 888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHH---HHHh--cCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 025612 146 MAEELFCELKKEGLDPDTRVYTEMIG---VYLQ--VGMIDKAMETYETMKAS-GCTPHKLTFTILIRNLENAGEEELVAA 219 (250)
Q Consensus 146 ~A~~~~~~m~~~g~~p~~~ty~~li~---~~~~--~g~~~~a~~~~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~a~~ 219 (250)
+|..++.+....- .+..-|+.+.. .++. -.+.+.-.++.+.+... |..--..++--+...|-...+++++.+
T Consensus 167 KA~~m~~KAV~~~--i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~ 244 (906)
T PRK14720 167 KAITYLKKAIYRF--IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIY 244 (906)
T ss_pred HHHHHHHHHHHHH--HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence 8888777765431 11112222222 1111 12333334444444333 444444556666666777777777777
Q ss_pred HHHHHHhccCCchHHHHHHHHhh
Q 025612 220 VRRDCIQYVEFPERFLEEVYQKH 242 (250)
Q Consensus 220 ~~~~m~~~g~~pd~~~~~~~~~~ 242 (250)
+++...+..-....-.+.+...+
T Consensus 245 iLK~iL~~~~~n~~a~~~l~~~y 267 (906)
T PRK14720 245 ILKKILEHDNKNNKAREELIRFY 267 (906)
T ss_pred HHHHHHhcCCcchhhHHHHHHHH
Confidence 77777665544443344444433
No 152
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=0.43 Score=41.86 Aligned_cols=149 Identities=15% Similarity=0.088 Sum_probs=111.6
Q ss_pred cCChhHHHHHHHHHHHhcCcccH-H-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 025612 73 AKSSSKLEEGFQSRICRLLKADL-L-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEEL 150 (250)
Q Consensus 73 ~~~~~~a~~l~~~m~~~~~~~~~-~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~ 150 (250)
.|+...|..-|+..++..-.+.. . .+-.+|....+.++.++.|+...+-..-. ..+|.---..+.-.+++++|..=
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n--~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPEN--PDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCC--CchhHhHHHHHHHHHHHHHHHHH
Confidence 47777888888888865544433 3 46677888999999999999886433233 44555444455555788999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 151 FCELKKEGLDP-DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 151 ~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
|++-.+- .| +...|-.+-.+..+.+.+++++..|++.++. +.--+..|+..-..+...++++.|.+-|+..++
T Consensus 417 F~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 417 FQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 9887663 34 4566777777777889999999999998775 333458899999999999999999999988764
No 153
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.24 E-value=0.22 Score=35.42 Aligned_cols=84 Identities=13% Similarity=0.024 Sum_probs=39.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC---HHHH-HHHHHHHHh
Q 025612 102 LRRQNELDLALKVFNFVRKEVWYKPD--LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD---TRVY-TEMIGVYLQ 175 (250)
Q Consensus 102 ~~~~~~~~~a~~~~~~m~~~~g~~~~--~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~---~~ty-~~li~~~~~ 175 (250)
+-..|+.++|..+|+.... .|+..+ ...+-.+-+.|...|++++|..+|++.... .|+ .... ..+--++..
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~-~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALA-AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHhcCCHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHH
Confidence 3345566666666666543 444433 223333444555556666666666554432 122 1111 111224445
Q ss_pred cCChHHHHHHHHH
Q 025612 176 VGMIDKAMETYET 188 (250)
Q Consensus 176 ~g~~~~a~~~~~~ 188 (250)
.|+.++|+..+-.
T Consensus 88 ~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 88 LGRPKEALEWLLE 100 (120)
T ss_pred CCCHHHHHHHHHH
Confidence 5666665555544
No 154
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.61 Score=39.37 Aligned_cols=169 Identities=14% Similarity=0.074 Sum_probs=115.2
Q ss_pred HHhcCChhHHHHHHHHHHHhcCcccHH--HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHcCCCHHH
Q 025612 70 MKLAKSSSKLEEGFQSRICRLLKADLL--DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDM-ILMLGKNKQIAM 146 (250)
Q Consensus 70 ~~~~~~~~~a~~l~~~m~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~l-i~~~~~~~~~~~ 146 (250)
+.-..++++++-.++.+.+.-..-|.. .+-.+.+..|++.+|+++|-.+. ...+ -|..+|-++ -++|.+++.++.
T Consensus 369 fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is-~~~i-kn~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRIS-GPEI-KNKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhc-Chhh-hhhHHHHHHHHHHHHhcCCchH
Confidence 334456667777776665544444444 58889999999999999999884 2333 356777554 588999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHhcCC----H
Q 025612 147 AEELFCELKKEGLDPDTRVYTEMI-GVYLQVGMIDKAMETYETMKASGCTPHKLTF-------TILIRNLENAGE----E 214 (250)
Q Consensus 147 A~~~~~~m~~~g~~p~~~ty~~li-~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty-------~~li~~~~~~g~----~ 214 (250)
|-+++-.+.. .-+.++.-.+| +-|.+++.+=-|-+.|+.+... .|++.-| ..++..++.... .
T Consensus 447 AW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWeGKRGACaG~f~~l~~~~~~~~p~ 521 (557)
T KOG3785|consen 447 AWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWEGKRGACAGLFRQLANHKTDPIPI 521 (557)
T ss_pred HHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccCCccchHHHHHHHHHcCCCCCCch
Confidence 9887766644 23455544444 6788899988888888888763 4555443 345555554432 5
Q ss_pred HHHHHHHHHHHhccCCchHHHHHHHHhhhcc
Q 025612 215 ELVAAVRRDCIQYVEFPERFLEEVYQKHRKT 245 (250)
Q Consensus 215 ~~a~~~~~~m~~~g~~pd~~~~~~~~~~~~~ 245 (250)
....++...+...+-.--.++-.+.++..+.
T Consensus 522 ~~~rEVvhllr~~~nsq~E~mikvvrkwa~~ 552 (557)
T KOG3785|consen 522 SQMREVVHLLRMKPNSQCEFMIKVVRKWAET 552 (557)
T ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHHHh
Confidence 5667777777777776667777777777766
No 155
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.12 E-value=0.37 Score=39.73 Aligned_cols=170 Identities=11% Similarity=0.010 Sum_probs=90.5
Q ss_pred hcCChhHHHHHHHHHHH-hcCcccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-------------CHH-------
Q 025612 72 LAKSSSKLEEGFQSRIC-RLLKADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKP-------------DLS------- 129 (250)
Q Consensus 72 ~~~~~~~a~~l~~~m~~-~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~-------------~~~------- 129 (250)
+.|+.+.|.+=|+.... .|..|-+. .+--+..+.|+.+.|++...++.+ +|+.. |+.
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIie-RG~r~HPElgIGm~tegiDvrsvgNt~~ 234 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIE-RGIRQHPELGIGMTTEGIDVRSVGNTLV 234 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHH-hhhhcCCccCccceeccCchhcccchHH
Confidence 55666766666666543 45555554 555566666777777766666653 33311 110
Q ss_pred -HHHHHHHH-------HHcCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 025612 130 -LYSDMILM-------LGKNKQIAMAEELFCELKKE-GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT 200 (250)
Q Consensus 130 -~y~~li~~-------~~~~~~~~~A~~~~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 200 (250)
.-+.++.+ +-+.|+++.|.+-+-.|.-+ .-..|.+|...+.-.- ..+++.+..+-++-+.+.+ ..-..|
T Consensus 235 lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ET 312 (459)
T KOG4340|consen 235 LHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPET 312 (459)
T ss_pred HHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHH
Confidence 01222222 23556666666666666432 2233455544332221 1233444444444444332 124578
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCC-chHHHHHHHHhhhc
Q 025612 201 FTILIRNLENAGEEELVAAVRRDCIQYVEF-PERFLEEVYQKHRK 244 (250)
Q Consensus 201 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~-pd~~~~~~~~~~~~ 244 (250)
|..++-.||++.-++.|.+++.+=...-.. -+.+.|++-.....
T Consensus 313 FANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt 357 (459)
T KOG4340|consen 313 FANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALIT 357 (459)
T ss_pred HHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHh
Confidence 888888899888888888887665444333 44555555444433
No 156
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.11 E-value=0.48 Score=36.98 Aligned_cols=154 Identities=15% Similarity=0.100 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhcC----cccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 025612 62 EAIQAVHAMKLAKSSSKLEEGFQSRICRLL----KADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMIL 136 (250)
Q Consensus 62 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~----~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~ 136 (250)
........+...|++.+|...|+.+...-- .++.. .+..++.+.|+++.|...|+...+...-.|.. .+--.+.
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~ 85 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYML 85 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHH
Confidence 344456677789999999999999986432 22222 58999999999999999999987654434432 2222222
Q ss_pred HHHc----------C---CCHHHHHHHHHHHHhCCCCCCH------HHH------------HHHHHHHHhcCChHHHHHH
Q 025612 137 MLGK----------N---KQIAMAEELFCELKKEGLDPDT------RVY------------TEMIGVYLQVGMIDKAMET 185 (250)
Q Consensus 137 ~~~~----------~---~~~~~A~~~~~~m~~~g~~p~~------~ty------------~~li~~~~~~g~~~~a~~~ 185 (250)
+.+. . +...+|...|+.+... -|++ ... -.+..-|.+.|.+..|..-
T Consensus 86 g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~--yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 86 GLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR--YPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHHhCccchhcccChHHHHHHHHHHHHHHHH--CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 2221 1 2235667777776653 2331 111 1234567788889999888
Q ss_pred HHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 025612 186 YETMKAS--GCTPHKLTFTILIRNLENAGEEELVA 218 (250)
Q Consensus 186 ~~~m~~~--g~~p~~~ty~~li~~~~~~g~~~~a~ 218 (250)
++.+.+. +..-.....-.++.+|.+.|..+.+.
T Consensus 164 ~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 164 FQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8888775 22222345678888888888877544
No 157
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.10 E-value=0.25 Score=46.12 Aligned_cols=109 Identities=18% Similarity=0.195 Sum_probs=58.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 025612 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG--KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDK 181 (250)
Q Consensus 104 ~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~--~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 181 (250)
..+++.+|.+....+.+.. |+ ..|..+++++. |.|+.++|..+++....-+.. |..|-.++-..|.+.|..++
T Consensus 21 d~~qfkkal~~~~kllkk~---Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH---PN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC---CC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 4455555555555554432 23 23444444432 555666666666555444333 55666666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 025612 182 AMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAA 219 (250)
Q Consensus 182 a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 219 (250)
|..+|++..+. -|+..-...+..+|+|.+.+.+-.+
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666655543 3555555555666666555555333
No 158
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=96.09 E-value=0.7 Score=41.82 Aligned_cols=128 Identities=14% Similarity=0.151 Sum_probs=93.5
Q ss_pred CCCcHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHHHHH----HHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHH
Q 025612 57 RVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTL----TELRRQNELDLALKVFNFVRKEVWYKPDLSLYS 132 (250)
Q Consensus 57 ~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~ll----~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~ 132 (250)
..+-|....+...+-..|+++.|+...+..+ +-.|+...+. +.+..+|.+++|..++++.++ -. .||...-.
T Consensus 368 ttllWt~y~laqh~D~~g~~~~A~~yId~AI--dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e-lD-~aDR~INs 443 (700)
T KOG1156|consen 368 TTLLWTLYFLAQHYDKLGDYEVALEYIDLAI--DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE-LD-TADRAINS 443 (700)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHh--ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh-cc-chhHHHHH
Confidence 3455777788999999999999999999876 5567776544 677889999999999999864 32 45666555
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH--------HHHH--HHHHHhcCChHHHHHHHHHHH
Q 025612 133 DMILMLGKNKQIAMAEELFCELKKEGLDPDTRV--------YTEM--IGVYLQVGMIDKAMETYETMK 190 (250)
Q Consensus 133 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t--------y~~l--i~~~~~~g~~~~a~~~~~~m~ 190 (250)
--.+...++++.++|.++.......|. +..- |-.+ -.+|.+.|++..|++=|..+.
T Consensus 444 KcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 444 KCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 677778899999999999988877765 3332 2222 236677777777766554443
No 159
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.97 E-value=0.19 Score=41.53 Aligned_cols=115 Identities=16% Similarity=0.143 Sum_probs=63.0
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 025612 122 VWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE---GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK 198 (250)
Q Consensus 122 ~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~---g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 198 (250)
.|...+..+...++..-....+++.+...+-++..+ ...|+...| ++++-|.+ -+.++++.+...=.+.|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlllk-y~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHHc-cChHHHHHHHhCcchhccccch
Confidence 344455555555555555556666666666665443 122222222 22232222 2355666666666666666777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCchHHHHHH
Q 025612 199 LTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEV 238 (250)
Q Consensus 199 ~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ 238 (250)
.|++.+|+.+.+.+++..|.++.-.|.......+..+..+
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe~~~nell~~L 175 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQEAFENELLQLL 175 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 7777777777777766666666666665554444444443
No 160
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.97 E-value=0.02 Score=36.98 Aligned_cols=61 Identities=16% Similarity=0.305 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhC----C-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 025612 129 SLYSDMILMLGKNKQIAMAEELFCELKKE----G-LDPD-TRVYTEMIGVYLQVGMIDKAMETYETM 189 (250)
Q Consensus 129 ~~y~~li~~~~~~~~~~~A~~~~~~m~~~----g-~~p~-~~ty~~li~~~~~~g~~~~a~~~~~~m 189 (250)
.+|+.+-..|...|++++|++.|++..+- | -.|+ ..+++.+-..|...|++++|++.+++-
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45566666666666666666666654321 1 0121 345555556666666666666666543
No 161
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.90 E-value=0.87 Score=40.49 Aligned_cols=183 Identities=13% Similarity=0.045 Sum_probs=120.4
Q ss_pred CCcHHHHHHHHHHHhcCChhHHHHHHHHHHHhc-CcccHH--------HHHHHHH----HcCCHHHHHHHHHHHHHhCCC
Q 025612 58 VLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRL-LKADLL--------DTLTELR----RQNELDLALKVFNFVRKEVWY 124 (250)
Q Consensus 58 ~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~-~~~~~~--------~ll~~~~----~~~~~~~a~~~~~~m~~~~g~ 124 (250)
.+.+....++..++-.|+-+.+++++.+..+.+ +..... .++..++ .....+.|.++++.+.+.
T Consensus 186 lLPp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--- 262 (468)
T PF10300_consen 186 LLPPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--- 262 (468)
T ss_pred hCCHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---
Confidence 355777888999999999999999988865433 332222 1222222 256788999999999753
Q ss_pred CCCHHHHHHHH-HHHHcCCCHHHHHHHHHHHHhCC-C--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 025612 125 KPDLSLYSDMI-LMLGKNKQIAMAEELFCELKKEG-L--DPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT 200 (250)
Q Consensus 125 ~~~~~~y~~li-~~~~~~~~~~~A~~~~~~m~~~g-~--~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 200 (250)
-|+...|.-.- +.+...|++++|.+.|++..... - +.....|=-+.-.+.-.++|++|.+.|..+.+.. ..+..+
T Consensus 263 yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~ 341 (468)
T PF10300_consen 263 YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAF 341 (468)
T ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHH
Confidence 57766665444 45667899999999999754311 1 1122333344555777899999999999998763 235566
Q ss_pred HHHHHHHHH-hcCCH-------HHHHHHHHHHHh-------ccCCchHHHHHHHHhhhc
Q 025612 201 FTILIRNLE-NAGEE-------ELVAAVRRDCIQ-------YVEFPERFLEEVYQKHRK 244 (250)
Q Consensus 201 y~~li~~~~-~~g~~-------~~a~~~~~~m~~-------~g~~pd~~~~~~~~~~~~ 244 (250)
|..+.-+|. ..|+. ++|.++|.+... ..++.|.|...-.++..+
T Consensus 342 Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~~~ 400 (468)
T PF10300_consen 342 YAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKYEK 400 (468)
T ss_pred HHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHh
Confidence 666665554 46777 888888887643 244456776554444433
No 162
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.87 E-value=0.4 Score=45.68 Aligned_cols=86 Identities=14% Similarity=0.092 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 025612 128 LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN 207 (250)
Q Consensus 128 ~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~ 207 (250)
...|+.+-.+-...|.+.+|.+-|-+.. |...|.-+|....+.|.+++..+++...++..-+|...+ .||-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHH
Confidence 4567777777777777777766554321 667788888888888888888888877777766776655 77778
Q ss_pred HHhcCCHHHHHHHH
Q 025612 208 LENAGEEELVAAVR 221 (250)
Q Consensus 208 ~~~~g~~~~a~~~~ 221 (250)
|++.+++.+.++++
T Consensus 1176 yAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI 1189 (1666)
T ss_pred HHHhchHHHHHHHh
Confidence 88888777766665
No 163
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.86 E-value=0.57 Score=42.17 Aligned_cols=137 Identities=12% Similarity=-0.009 Sum_probs=87.8
Q ss_pred cHHHHHH-HHHHHhcC--C---hhHHHHHHHHHHHhcCcccHH---H-HHHHHHHc--------CCHHHHHHHHHHHHHh
Q 025612 60 SSEAIQA-VHAMKLAK--S---SSKLEEGFQSRICRLLKADLL---D-TLTELRRQ--------NELDLALKVFNFVRKE 121 (250)
Q Consensus 60 ~~~~~~l-l~~~~~~~--~---~~~a~~l~~~m~~~~~~~~~~---~-ll~~~~~~--------~~~~~a~~~~~~m~~~ 121 (250)
+.+++.+ +++..... + ...|..+|++..+ ..|+.. + +..++... .++..+.+........
T Consensus 336 ~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 336 QGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 3344443 55544322 2 4578888888764 345543 2 22222211 1123344444433221
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 025612 122 VWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF 201 (250)
Q Consensus 122 ~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty 201 (250)
.....+...|.++--.+...|++++|...|++....+ |+...|..+-..|...|+.++|.+.|++-.. +.|...||
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~ 489 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTL 489 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchH
Confidence 1233456778877666667899999999999988864 7899999999999999999999999998766 34665565
Q ss_pred H
Q 025612 202 T 202 (250)
Q Consensus 202 ~ 202 (250)
.
T Consensus 490 ~ 490 (517)
T PRK10153 490 Y 490 (517)
T ss_pred H
Confidence 4
No 164
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.85 E-value=0.73 Score=37.93 Aligned_cols=151 Identities=11% Similarity=0.069 Sum_probs=91.7
Q ss_pred hcCChhHHHHHHHHHHHhc---CcccHH-----HHHHHHHHc-CCHHHHHHHHHHHHH---hCCCCC--CHHHHHHHHHH
Q 025612 72 LAKSSSKLEEGFQSRICRL---LKADLL-----DTLTELRRQ-NELDLALKVFNFVRK---EVWYKP--DLSLYSDMILM 137 (250)
Q Consensus 72 ~~~~~~~a~~l~~~m~~~~---~~~~~~-----~ll~~~~~~-~~~~~a~~~~~~m~~---~~g~~~--~~~~y~~li~~ 137 (250)
+..++++|...+++....- -.|+.. .+-..|-.. |++++|.+.|.+..+ ..+ .+ -..++..+...
T Consensus 86 k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 86 KKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADL 164 (282)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHH
Confidence 3448888888888765321 122221 244445566 799999999988532 233 11 14566788888
Q ss_pred HHcCCCHHHHHHHHHHHHhCCC-----CCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHH
Q 025612 138 LGKNKQIAMAEELFCELKKEGL-----DPDTR--VYTEMIGVYLQVGMIDKAMETYETMKAS--GCTPH--KLTFTILIR 206 (250)
Q Consensus 138 ~~~~~~~~~A~~~~~~m~~~g~-----~p~~~--ty~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~--~~ty~~li~ 206 (250)
+.+.|++++|.++|++....-+ +.+.. .++++| ++...||...|.+.|++.... ++..+ ......||.
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l-~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~ 243 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAIL-CHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLE 243 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHH-HHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 9999999999999999876432 22232 234444 556679999999999998754 44433 355667777
Q ss_pred HHHhc--CCHHHHHHHHHHH
Q 025612 207 NLENA--GEEELVAAVRRDC 224 (250)
Q Consensus 207 ~~~~~--g~~~~a~~~~~~m 224 (250)
+|-.. ..+..+..=|+.+
T Consensus 244 A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 244 AYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHTT-CCCHHHHCHHHTTS
T ss_pred HHHhCCHHHHHHHHHHHccc
Confidence 77643 2355555444443
No 165
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.78 E-value=0.5 Score=35.19 Aligned_cols=90 Identities=11% Similarity=0.057 Sum_probs=57.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPD-LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 176 (250)
+-..+...|++++|.++|+.+.. +.|. ..-|-.|=-+|-..|++++|...|.....-. +-|...+-.+-.+|...
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 44444567777777777777654 2333 3444556666666777777777777765543 23556666667777777
Q ss_pred CChHHHHHHHHHHHH
Q 025612 177 GMIDKAMETYETMKA 191 (250)
Q Consensus 177 g~~~~a~~~~~~m~~ 191 (250)
|+.+.|.+-|+....
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777776544
No 166
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.76 E-value=1.6 Score=42.06 Aligned_cols=157 Identities=11% Similarity=-0.045 Sum_probs=104.0
Q ss_pred HHhcCChhHHHHHHHHHHHhcCcccHH-------HHHHHHHHcCCHHHHHHHHHHHHHh---CCC-CCCHHHHHHHHHHH
Q 025612 70 MKLAKSSSKLEEGFQSRICRLLKADLL-------DTLTELRRQNELDLALKVFNFVRKE---VWY-KPDLSLYSDMILML 138 (250)
Q Consensus 70 ~~~~~~~~~a~~l~~~m~~~~~~~~~~-------~ll~~~~~~~~~~~a~~~~~~m~~~---~g~-~~~~~~y~~li~~~ 138 (250)
+...|++++|...+++.....-..+.. .+-..+...|++++|...+.+.... .|- .....+++.+-..+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 446799999999999876531111111 2444566789999999999886531 111 11134456666778
Q ss_pred HcCCCHHHHHHHHHHHHh----CCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCC--CHHHHHHHHHH
Q 025612 139 GKNKQIAMAEELFCELKK----EGLD--P-DTRVYTEMIGVYLQVGMIDKAMETYETMKAS--GCTP--HKLTFTILIRN 207 (250)
Q Consensus 139 ~~~~~~~~A~~~~~~m~~----~g~~--p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p--~~~ty~~li~~ 207 (250)
...|++++|...+++... .|.. + ....+..+-..+...|++++|...+++.... ...+ ....+..+-..
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 889999999998887543 2321 1 2334555556677789999999999886542 1112 23445556677
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 025612 208 LENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 208 ~~~~g~~~~a~~~~~~m~~ 226 (250)
+...|+++.|.+.+.....
T Consensus 622 ~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 622 SLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 8899999999998888754
No 167
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.76 E-value=0.15 Score=46.01 Aligned_cols=98 Identities=14% Similarity=0.127 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH------
Q 025612 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT------ 200 (250)
Q Consensus 127 ~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t------ 200 (250)
+..+.-.+-..+.+...+..|-++|..|-.. -++++.....++|.+|..+-+...+ +.||++.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHh
Confidence 3445555555566677788899999988653 4678888899999999998877655 4455532
Q ss_pred -----HHHHHHHHHhcCCHHHHHHHHHHHHhccCCchHHH
Q 025612 201 -----FTILIRNLENAGEEELVAAVRRDCIQYVEFPERFL 235 (250)
Q Consensus 201 -----y~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~ 235 (250)
|.---++|.++|+-.+|.++++++....+..++|.
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav~E~Rf~ 854 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAVAESRFN 854 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhhhhhhhc
Confidence 55566889999999999999999988777665543
No 168
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.75 E-value=0.043 Score=35.45 Aligned_cols=64 Identities=22% Similarity=0.316 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 163 TRVYTEMIGVYLQVGMIDKAMETYETMKAS----GC-TPH-KLTFTILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 163 ~~ty~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~-~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
..+|+.+-..|...|++++|+..|++..+. |- .|+ ..++..+-..|...|++++|.+.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 357889999999999999999999987542 21 233 56788899999999999999999987643
No 169
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.72 E-value=0.58 Score=34.82 Aligned_cols=92 Identities=11% Similarity=-0.019 Sum_probs=68.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 025612 133 DMILMLGKNKQIAMAEELFCELKKEGLDP-DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211 (250)
Q Consensus 133 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 211 (250)
.+-.-+...|++++|.++|+-+..- .| +..-|-.|-.+|-..|++++|...|........ -|+..+-.+-.++...
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 3444556788889999888887653 33 445566666777778889999998888877653 3667788888888888
Q ss_pred CCHHHHHHHHHHHHhc
Q 025612 212 GEEELVAAVRRDCIQY 227 (250)
Q Consensus 212 g~~~~a~~~~~~m~~~ 227 (250)
|+.+.|.+-|+.....
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999998888877654
No 170
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.62 E-value=0.24 Score=44.15 Aligned_cols=123 Identities=15% Similarity=0.101 Sum_probs=91.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHH
Q 025612 95 LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE--MIGV 172 (250)
Q Consensus 95 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~--li~~ 172 (250)
..+=++-+.+.+++++|.+..+.+.. . .+-|...+.+-+-++...+.+++|.++.+.-.. ..+++. +=.+
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~-~-~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKA 86 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILS-I-VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKA 86 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHh-c-CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHH
Confidence 33556777788999999999999963 3 345677788888899999999999966654321 123333 3455
Q ss_pred HH--hcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 025612 173 YL--QVGMIDKAMETYETMKASGCTPHK-LTFTILIRNLENAGEEELVAAVRRDCIQYVEF 230 (250)
Q Consensus 173 ~~--~~g~~~~a~~~~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 230 (250)
|| +.++.|+|+..++ |..++. .+-..=-..+-+.|++++|.++++.+.+++..
T Consensus 87 Yc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d 142 (652)
T KOG2376|consen 87 YCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD 142 (652)
T ss_pred HHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc
Confidence 55 5899999999988 444443 35556667788999999999999999887765
No 171
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.56 E-value=0.91 Score=40.37 Aligned_cols=145 Identities=17% Similarity=0.111 Sum_probs=103.0
Q ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCC
Q 025612 92 KADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPD-----LSLYSDMILMLGK----NKQIAMAEELFCELKKEGLDPD 162 (250)
Q Consensus 92 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~-----~~~y~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~ 162 (250)
+|.+..++...+=.|+-+.+.+.+..-.+..++.-. .-.|+.++..++- ....+.|.++++.+..+ -|+
T Consensus 188 Pp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~ 265 (468)
T PF10300_consen 188 PPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPN 265 (468)
T ss_pred CHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCC
Confidence 444446888888889999999999988765555443 2446666655554 45688999999999885 789
Q ss_pred HHHHHHHH-HHHHhcCChHHHHHHHHHHHHC--CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-cCCchHHHHH
Q 025612 163 TRVYTEMI-GVYLQVGMIDKAMETYETMKAS--GC-TPHKLTFTILIRNLENAGEEELVAAVRRDCIQY-VEFPERFLEE 237 (250)
Q Consensus 163 ~~ty~~li-~~~~~~g~~~~a~~~~~~m~~~--g~-~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~-g~~pd~~~~~ 237 (250)
..-|.-.- +.+...|++++|.+.|++.... .. ......|--+.-.+.-.+++++|.+.|..+.+. ...+--+.|.
T Consensus 266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~ 345 (468)
T PF10300_consen 266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYL 345 (468)
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHH
Confidence 88887775 4555689999999999975432 11 112234455556677889999999999999875 4445444444
Q ss_pred H
Q 025612 238 V 238 (250)
Q Consensus 238 ~ 238 (250)
-
T Consensus 346 ~ 346 (468)
T PF10300_consen 346 A 346 (468)
T ss_pred H
Confidence 3
No 172
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.52 E-value=0.81 Score=42.89 Aligned_cols=157 Identities=11% Similarity=0.033 Sum_probs=114.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCcccHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELR--RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQI 144 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~ 144 (250)
|-.....+++..|+...++..+.--......++.++. |.|+.++|..+++.... .+.. |..|...+-.+|-..+..
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~-~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYG-LKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhcc-CCCC-chHHHHHHHHHHHHHhhh
Confidence 3344566888999999988775543333345677665 88999999999998743 4433 899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------H
Q 025612 145 AMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE----------E 214 (250)
Q Consensus 145 ~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~----------~ 214 (250)
++|..+|+..... .|+..--..+..+|++.+++.+-.++=-+|-+. +.-+.+.|..+++.+...-. .
T Consensus 94 d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 94 DEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred hHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhH
Confidence 9999999998764 688888888889999998887766555444432 33456888888887765321 3
Q ss_pred HHHHHHHHHHHhcc
Q 025612 215 ELVAAVRRDCIQYV 228 (250)
Q Consensus 215 ~~a~~~~~~m~~~g 228 (250)
-.|++.++.+.+.+
T Consensus 171 ~LA~~m~~~~l~~~ 184 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKK 184 (932)
T ss_pred HHHHHHHHHHhccC
Confidence 34666677766543
No 173
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.51 E-value=0.12 Score=32.29 Aligned_cols=60 Identities=15% Similarity=0.225 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHH
Q 025612 129 SLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG-MIDKAMETYETM 189 (250)
Q Consensus 129 ~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g-~~~~a~~~~~~m 189 (250)
.+|..+=..+...|++++|+..|.+..+.. +-+...|..+-.+|.+.| ++++|++.|+..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 344444444445555555555554444321 112334444444444444 344554444443
No 174
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.49 E-value=0.22 Score=44.22 Aligned_cols=112 Identities=13% Similarity=0.115 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 025612 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP-DTRVYTEMIGVYLQVGMIDKAMETY 186 (250)
Q Consensus 108 ~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~~ 186 (250)
+.+..++|-++....+..+|..++..|=-.|--.|++++|.++|+..... +| |...||-|-..++...+.++|+.-|
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY 487 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAY 487 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHH
Confidence 34566777777666775677777888877888889999999999998763 55 5788999999999999999999999
Q ss_pred HHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 025612 187 ETMKASGCTPHK--LTFTILIRNLENAGEEELVAAVRRDC 224 (250)
Q Consensus 187 ~~m~~~g~~p~~--~ty~~li~~~~~~g~~~~a~~~~~~m 224 (250)
++.++ ++|+- +=||. -=+|.+.|.+++|.+.|-..
T Consensus 488 ~rALq--LqP~yVR~RyNl-gIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 488 NRALQ--LQPGYVRVRYNL-GISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHh--cCCCeeeeehhh-hhhhhhhhhHHHHHHHHHHH
Confidence 99988 45654 33544 44688999999998887653
No 175
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.46 E-value=0.18 Score=31.90 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=21.5
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 025612 138 LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190 (250)
Q Consensus 138 ~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~ 190 (250)
|.+.+++++|.++++.+...+ +-+...|...-..|.+.|++++|.+.|+...
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344444444444444443321 1123333333444444444444444444444
No 176
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.41 E-value=0.13 Score=32.16 Aligned_cols=63 Identities=16% Similarity=0.228 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 025612 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP-HKLTFTILIRNLENAG-EEELVAAVRRDCIQ 226 (250)
Q Consensus 162 ~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g-~~~~a~~~~~~m~~ 226 (250)
+..+|..+-..+...|++++|+..|++..+.. | +...|..+-.+|.+.| ++++|.+.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45667777777888888888888887776642 4 4466777777777777 67888777776543
No 177
>PLN02789 farnesyltranstransferase
Probab=95.31 E-value=1.5 Score=36.90 Aligned_cols=143 Identities=9% Similarity=0.019 Sum_probs=96.8
Q ss_pred HHHHHHHHH-hcCChhHHHHHHHHHHHhcCcccHHH----HHHHHHHcC-CHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 025612 63 AIQAVHAMK-LAKSSSKLEEGFQSRICRLLKADLLD----TLTELRRQN-ELDLALKVFNFVRKEVWYKPDLSLYSDMIL 136 (250)
Q Consensus 63 ~~~ll~~~~-~~~~~~~a~~l~~~m~~~~~~~~~~~----ll~~~~~~~-~~~~a~~~~~~m~~~~g~~~~~~~y~~li~ 136 (250)
++..++++. ..++.++|+.+.++.+.. .|+..+ --.++.+.| .+++++..++.+.+ .+ +-+..+|+..-.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~-~n-pknyqaW~~R~~ 114 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE-DN-PKNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH-HC-CcchHHhHHHHH
Confidence 333444444 457889999999998743 343331 111223345 57999999999875 32 234556776555
Q ss_pred HHHcCCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 025612 137 MLGKNKQ--IAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211 (250)
Q Consensus 137 ~~~~~~~--~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 211 (250)
.+.+.|+ .+++..+++++.+.. .-|...|+.--..+.+.|+++++++.++++.+.... |...|+.....+.+.
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhc
Confidence 5556665 367888888887642 236788988888888999999999999999887644 556677766665554
No 178
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.30 E-value=0.65 Score=40.89 Aligned_cols=150 Identities=14% Similarity=0.095 Sum_probs=88.6
Q ss_pred HHHHHhcCChhHHHHHHHH-HHHhcCcccHH-HHHHHHHHcCCHHHHHHHHHHHH----------------HhCCCCCCH
Q 025612 67 VHAMKLAKSSSKLEEGFQS-RICRLLKADLL-DTLTELRRQNELDLALKVFNFVR----------------KEVWYKPDL 128 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~-m~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~----------------~~~g~~~~~ 128 (250)
++...-.++++.+.+.... -.-..++++.. +++.-+-+.|..+.|+++-.+-. +...-..+.
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~ 347 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDP 347 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTH
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcH
Confidence 4555566777776555541 11112222222 45555556666665555433221 112223478
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 025612 129 SLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208 (250)
Q Consensus 129 ~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~ 208 (250)
..|..|-+...+.|+++-|++.|++... |..|+--|.-.|+.+...++-+.-...|- ++....++
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~ 412 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAA 412 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHH
Confidence 8999999999999999999999998765 67788888889999888888877777652 56666777
Q ss_pred HhcCCHHHHHHHHHHHHhccCCchHH
Q 025612 209 ENAGEEELVAAVRRDCIQYVEFPERF 234 (250)
Q Consensus 209 ~~~g~~~~a~~~~~~m~~~g~~pd~~ 234 (250)
.-.|++++..+++. +.|-.|-+.
T Consensus 413 ~~lgd~~~cv~lL~---~~~~~~~A~ 435 (443)
T PF04053_consen 413 LLLGDVEECVDLLI---ETGRLPEAA 435 (443)
T ss_dssp HHHT-HHHHHHHHH---HTT-HHHHH
T ss_pred HHcCCHHHHHHHHH---HcCCchHHH
Confidence 77788877776654 444444433
No 179
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.26 E-value=0.77 Score=33.28 Aligned_cols=109 Identities=15% Similarity=0.132 Sum_probs=62.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 176 (250)
.++..+.+.+.......+++.+.+ .+ ..+...+|.+|..|++.+. ++..+.+.. . .+......+++.|-+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~-~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~--~----~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALK-LN-SENPALQTKLIELYAKYDP-QKEIERLDN--K----SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHc-cC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh--c----cccCCHHHHHHHHHHc
Confidence 566677677777777777777764 34 2566677777777776533 333344432 1 2334444466777777
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHH
Q 025612 177 GMIDKAMETYETMKASGCTPHKLTFTILIRNLENA-GEEELVAAVRRD 223 (250)
Q Consensus 177 g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~-g~~~~a~~~~~~ 223 (250)
+.++++.-++..+.. |...++.+... ++++.|.+++..
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 777777777666532 11222223333 566666666554
No 180
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=95.16 E-value=2.5 Score=38.67 Aligned_cols=151 Identities=13% Similarity=0.058 Sum_probs=91.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQI 144 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~ 144 (250)
.+..-.+|++..|..++.+..+..-. -+.- +-+.....+.+++.|..+|.+.+. ..|+...|.--++.---.++.
T Consensus 591 ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~---~sgTeRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS---ISGTERVWMKSANLERYLDNV 667 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc---cCCcchhhHHHhHHHHHhhhH
Confidence 44455668888888888776643322 1111 566677788888888888887743 467778887777766667888
Q ss_pred HHHHHHHHHHHhCCCCCCHH-----------------------------------HHHHHHHHHHhcCChHHHHHHHHHH
Q 025612 145 AMAEELFCELKKEGLDPDTR-----------------------------------VYTEMIGVYLQVGMIDKAMETYETM 189 (250)
Q Consensus 145 ~~A~~~~~~m~~~g~~p~~~-----------------------------------ty~~li~~~~~~g~~~~a~~~~~~m 189 (250)
++|.+++++-.+. -|+-. .|-.|.+-=-+.|.+-+|..++++-
T Consensus 668 eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildra 745 (913)
T KOG0495|consen 668 EEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRA 745 (913)
T ss_pred HHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 8888887765542 23322 1222323333344555555555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 025612 190 KASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223 (250)
Q Consensus 190 ~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~ 223 (250)
+-.+ .-|...|...|+.=.|.|..++|..+...
T Consensus 746 rlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 746 RLKN-PKNALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred HhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4433 12445666666666666666666655443
No 181
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.11 E-value=0.7 Score=37.70 Aligned_cols=85 Identities=16% Similarity=0.112 Sum_probs=53.4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHH
Q 025612 103 RRQNELDLALKVFNFVRKEVWYKPD----LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD----TRVYTEMIGVYL 174 (250)
Q Consensus 103 ~~~~~~~~a~~~~~~m~~~~g~~~~----~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~----~~ty~~li~~~~ 174 (250)
.+.|++++|...|+.+.+. .|+ ...+--+-..|...|++++|...|+.+.+. .|+ ...+-.+...|.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~klg~~~~ 228 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKVGVIMQ 228 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHHHHHHH
Confidence 4567777777777777642 232 234555666677778888888887777653 122 222333445566
Q ss_pred hcCChHHHHHHHHHHHHC
Q 025612 175 QVGMIDKAMETYETMKAS 192 (250)
Q Consensus 175 ~~g~~~~a~~~~~~m~~~ 192 (250)
..|+.++|..+|+...+.
T Consensus 229 ~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 229 DKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 778888888888777664
No 182
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.08 E-value=2.3 Score=38.75 Aligned_cols=128 Identities=15% Similarity=0.128 Sum_probs=72.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 176 (250)
..+..+.+.|++......|+.....--+......|.-.|...-..+-++.+.+++....+- +...-+--|..+++.
T Consensus 107 ~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 107 DYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhc
Confidence 3455555667776667777665433333344455666666666666666666666655442 333345555555555
Q ss_pred CChHHHHHHHHHHHHC----------------------------------------C--CCCCH--HHHHHHHHHHHhcC
Q 025612 177 GMIDKAMETYETMKAS----------------------------------------G--CTPHK--LTFTILIRNLENAG 212 (250)
Q Consensus 177 g~~~~a~~~~~~m~~~----------------------------------------g--~~p~~--~ty~~li~~~~~~g 212 (250)
+++++|-+.+...... | .-+|. ..|+.|-+-|.+.|
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhh
Confidence 5555555544444320 1 11222 33777778888888
Q ss_pred CHHHHHHHHHHHHhcc
Q 025612 213 EEELVAAVRRDCIQYV 228 (250)
Q Consensus 213 ~~~~a~~~~~~m~~~g 228 (250)
+++.|..++.+-...-
T Consensus 263 ~~ekarDvyeeai~~v 278 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQTV 278 (835)
T ss_pred hhHHHHHHHHHHHHhh
Confidence 8888888877765543
No 183
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.98 E-value=1.3 Score=36.65 Aligned_cols=66 Identities=9% Similarity=0.126 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 025612 163 TRVYTEMIGVYLQVGMIDKAMETYETMKAS-GCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEF 230 (250)
Q Consensus 163 ~~ty~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 230 (250)
..+-+..-.-..+.|++++|.+-|+...+- |..| ...||.-+..| +.|+++.|.+...+.+++|+.
T Consensus 144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaHy-~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHY-SSRQYASALKHISEIIERGIR 210 (459)
T ss_pred cchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhh
Confidence 334444444556789999999999987765 6665 45788777655 457899999999999999886
No 184
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.66 E-value=1.2 Score=32.29 Aligned_cols=68 Identities=7% Similarity=0.063 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 025612 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEF 230 (250)
Q Consensus 162 ~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 230 (250)
+....+.-+......|+-|...+++.++.+ +-.+++...--+-.||.+.|+..++.+++++.=+.|+.
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 455567778888999999999999999876 34678888889999999999999999999999888875
No 185
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.65 E-value=0.23 Score=31.37 Aligned_cols=59 Identities=17% Similarity=0.086 Sum_probs=49.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 025612 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEF 230 (250)
Q Consensus 171 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 230 (250)
..|.+.+++++|.++++.+...+ +.+...+...-..+.+.|++++|.+.++...+.+-.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 56889999999999999998863 225567777888999999999999999998865543
No 186
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=94.62 E-value=0.43 Score=43.69 Aligned_cols=118 Identities=14% Similarity=0.159 Sum_probs=84.5
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 025612 104 RQNELDLALKVFNFVRKEVWYKPD-LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKA 182 (250)
Q Consensus 104 ~~~~~~~a~~~~~~m~~~~g~~~~-~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a 182 (250)
+.++++.|.+.|..-.. +.|| ...||++-.+|.+.++-.+|...+.+-.+.+ .-+...|-.-+-...+.|.+++|
T Consensus 531 qlek~q~av~aF~rcvt---L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda 606 (777)
T KOG1128|consen 531 QLEKEQAAVKAFHRCVT---LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDA 606 (777)
T ss_pred HHhhhHHHHHHHHHHhh---cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHH
Confidence 66788888888887752 3454 7789999999999999999999999988775 44455566667777899999999
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHH
Q 025612 183 METYETMKASG-CTPHKLTFTILIRNLENAGE---EELVAAVRRDCI 225 (250)
Q Consensus 183 ~~~~~~m~~~g-~~p~~~ty~~li~~~~~~g~---~~~a~~~~~~m~ 225 (250)
.+.+.+|.... -.-|...-..++....+..- -+++.......+
T Consensus 607 ~~A~~rll~~~~~~~d~~vl~~iv~~~~~~~~d~s~de~~~~k~~~k 653 (777)
T KOG1128|consen 607 IKAYHRLLDLRKKYKDDEVLLIIVRTVLEGMTDESGDEATGLKGKLK 653 (777)
T ss_pred HHHHHHHHHhhhhcccchhhHHHHHHHHhhccccccchhhhhhHHHH
Confidence 99999876531 11255666666666665433 444444444443
No 187
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.55 E-value=1.2 Score=36.70 Aligned_cols=100 Identities=16% Similarity=0.265 Sum_probs=71.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCh
Q 025612 102 LRRQNELDLALKVFNFVRKEVWYKP-DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD-TRVYTEMIGVYLQVGMI 179 (250)
Q Consensus 102 ~~~~~~~~~a~~~~~~m~~~~g~~~-~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~ 179 (250)
..+.+++.+|.+.|.+..+ +.| |.+-|-.=--+|++.|.++.|.+=-+.-.. +.|. ..+|..|-.+|...|++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcH
Confidence 4577888888888888764 344 466666777788888888888765554433 2333 46788888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 025612 180 DKAMETYETMKASGCTPHKLTFTILIRNL 208 (250)
Q Consensus 180 ~~a~~~~~~m~~~g~~p~~~ty~~li~~~ 208 (250)
++|.+.|+.-.+ +.|+..+|..=++..
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 888888887776 678777776655544
No 188
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.47 E-value=0.85 Score=37.42 Aligned_cols=79 Identities=16% Similarity=0.171 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHH
Q 025612 128 LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA-----SGCTPHKLTFT 202 (250)
Q Consensus 128 ~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~ty~ 202 (250)
..++..++..+...|+.+.+.+.++++.... +-|...|..+|.+|.+.|+...|++.|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3556778888888888888888888887642 44778889999999999999999888888764 48888888877
Q ss_pred HHHHH
Q 025612 203 ILIRN 207 (250)
Q Consensus 203 ~li~~ 207 (250)
...+.
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 77666
No 189
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.43 E-value=2.2 Score=34.45 Aligned_cols=149 Identities=14% Similarity=0.120 Sum_probs=89.4
Q ss_pred hcCChhHHHHHHHHHHH---hc-CcccHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHcCC
Q 025612 72 LAKSSSKLEEGFQSRIC---RL-LKADLL----DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMIL-MLGKNK 142 (250)
Q Consensus 72 ~~~~~~~a~~l~~~m~~---~~-~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~-~~~~~~ 142 (250)
..++++++.+++.++.. .| ..++.- .++-+....|+.+.|...++.+..+. |...-...|=- -+-..|
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f---p~S~RV~~lkam~lEa~~ 100 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF---PGSKRVGKLKAMLLEATG 100 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC---CCChhHHHHHHHHHHHhh
Confidence 35667777777777652 33 444443 35556667777777777777775432 22111111111 122356
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 025612 143 QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222 (250)
Q Consensus 143 ~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~ 222 (250)
.+++|++.++.+.+.. +.|.++|--=|...-..|+--+|.+-+....+. +.-|...|.-+-+.|...|+++.|.-.++
T Consensus 101 ~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 101 NYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred chhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 7777777777777664 445566654444444556655666666555544 44577777778788887777777777777
Q ss_pred HHH
Q 025612 223 DCI 225 (250)
Q Consensus 223 ~m~ 225 (250)
++.
T Consensus 179 E~l 181 (289)
T KOG3060|consen 179 ELL 181 (289)
T ss_pred HHH
Confidence 765
No 190
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.32 E-value=0.4 Score=41.80 Aligned_cols=65 Identities=12% Similarity=0.082 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 025612 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK----LTFTILIRNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 161 p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
.+...|+.+-.+|.+.|++++|...|++-.+. .|+. .+|..+-.+|...|++++|.+.++...+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35788999999999999999999999998774 5774 46999999999999999999999998875
No 191
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.30 E-value=2.7 Score=34.99 Aligned_cols=135 Identities=15% Similarity=0.212 Sum_probs=89.9
Q ss_pred HHHHHHHHcCC-----HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--CCC----HHHHHHHHHHHHhCC---CCCC
Q 025612 97 DTLTELRRQNE-----LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK--NKQ----IAMAEELFCELKKEG---LDPD 162 (250)
Q Consensus 97 ~ll~~~~~~~~-----~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~--~~~----~~~A~~~~~~m~~~g---~~p~ 162 (250)
++...++-.++ +++...+++.|.+ .|+.-+..+|-+..-.... ..+ ...|..+|+.|++.. ..++
T Consensus 62 ~la~~l~~~~~~p~~~~~~~~~~y~~L~~-~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~ 140 (297)
T PF13170_consen 62 ILAALLDISFEDPEEAFKEVLDIYEKLKE-AGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPE 140 (297)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHH-hccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCcc
Confidence 34444444444 4567788888974 8899888888663333333 333 467899999999874 2467
Q ss_pred HHHHHHHHHHHHhcCC----hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH-hcCC--HHHHHHHHHHHHhccCCchHH
Q 025612 163 TRVYTEMIGVYLQVGM----IDKAMETYETMKASGCTPHKL-TFTILIRNLE-NAGE--EELVAAVRRDCIQYVEFPERF 234 (250)
Q Consensus 163 ~~ty~~li~~~~~~g~----~~~a~~~~~~m~~~g~~p~~~-ty~~li~~~~-~~g~--~~~a~~~~~~m~~~g~~pd~~ 234 (250)
..++.+|+.. ..++ .++++.+|+.+.+.|+..+.. .+.+-+-++. .... +.++.++++.+.+.|+++...
T Consensus 141 D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~ 218 (297)
T PF13170_consen 141 DYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYM 218 (297)
T ss_pred chhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccc
Confidence 7889999876 3333 467788899999988877543 3333333333 2222 557899999999999985433
No 192
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=94.28 E-value=1.2 Score=32.79 Aligned_cols=95 Identities=7% Similarity=0.013 Sum_probs=70.7
Q ss_pred hCCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHhCC---C--CCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHC
Q 025612 121 EVWYKPDL--SLYSDMILMLGKNKQIAMAEELFCELKKEG---L--DPDTRVYTEMIGVYLQVGM-IDKAMETYETMKAS 192 (250)
Q Consensus 121 ~~g~~~~~--~~y~~li~~~~~~~~~~~A~~~~~~m~~~g---~--~p~~~ty~~li~~~~~~g~-~~~a~~~~~~m~~~ 192 (250)
+.+..++. ...|++++-.+..+++.....+++.+.--. + ..+..+|.+++.+.+.... --.+..+|..|++.
T Consensus 30 ~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~ 109 (145)
T PF13762_consen 30 EENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKN 109 (145)
T ss_pred hcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHc
Confidence 35566664 345888888888888888888888774311 0 2355679999999977666 33577889999998
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHH
Q 025612 193 GCTPHKLTFTILIRNLENAGEEE 215 (250)
Q Consensus 193 g~~p~~~ty~~li~~~~~~g~~~ 215 (250)
+.++++.-|..||+++.+....+
T Consensus 110 ~~~~t~~dy~~li~~~l~g~~~~ 132 (145)
T PF13762_consen 110 DIEFTPSDYSCLIKAALRGYFHD 132 (145)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCc
Confidence 89999999999999998864433
No 193
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.23 E-value=4.3 Score=37.12 Aligned_cols=165 Identities=13% Similarity=0.179 Sum_probs=97.7
Q ss_pred HhcCChhHHHHHHHHHHHhcC-cccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHc---CCCH
Q 025612 71 KLAKSSSKLEEGFQSRICRLL-KADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPD-LSLYSDMILMLGK---NKQI 144 (250)
Q Consensus 71 ~~~~~~~~a~~l~~~m~~~~~-~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~~~y~~li~~~~~---~~~~ 144 (250)
-..|-++.-..+++++++..+ .|... ..--.+-.+..+++++++|+.-..-.. -|+ -..||+-+.-+.+ ...+
T Consensus 488 Es~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk-~p~v~diW~tYLtkfi~rygg~kl 566 (835)
T KOG2047|consen 488 ESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFK-WPNVYDIWNTYLTKFIKRYGGTKL 566 (835)
T ss_pred HHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC-CccHHHHHHHHHHHHHHHhcCCCH
Confidence 344677777888888877664 34433 122223355668888888886542111 233 3467776665554 2358
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHH
Q 025612 145 AMAEELFCELKKEGLDPDTRVYTEMIGVYL--QVGMIDKAMETYETMKASGCTPHK--LTFTILIRNLENAGEEELVAAV 220 (250)
Q Consensus 145 ~~A~~~~~~m~~~g~~p~~~ty~~li~~~~--~~g~~~~a~~~~~~m~~~g~~p~~--~ty~~li~~~~~~g~~~~a~~~ 220 (250)
+.|..+|++..+ |++|...-+--|+.+-. +.|....|..++++... ++++.. ..||+.|+--+..=-+-...++
T Consensus 567 EraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~i 644 (835)
T KOG2047|consen 567 ERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREI 644 (835)
T ss_pred HHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHH
Confidence 999999999888 77776544433332222 25888889999988543 344433 5677777665554444445555
Q ss_pred HHHHHhccCCchHHHHHHHH
Q 025612 221 RRDCIQYVEFPERFLEEVYQ 240 (250)
Q Consensus 221 ~~~m~~~g~~pd~~~~~~~~ 240 (250)
+++..+. .||.-...+..
T Consensus 645 YekaIe~--Lp~~~~r~mcl 662 (835)
T KOG2047|consen 645 YEKAIES--LPDSKAREMCL 662 (835)
T ss_pred HHHHHHh--CChHHHHHHHH
Confidence 5555544 45544444443
No 194
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.12 E-value=2.6 Score=37.76 Aligned_cols=138 Identities=16% Similarity=0.178 Sum_probs=98.1
Q ss_pred HHHHHHHHHH-Hhc--CcccHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 025612 78 KLEEGFQSRI-CRL--LKADLLDTLTE-LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE 153 (250)
Q Consensus 78 ~a~~l~~~m~-~~~--~~~~~~~ll~~-~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~ 153 (250)
.+.++|-++. ..+ ..||+...|.. |.-.|++++|.+.|+.... .. +-|..+||-|=-.++...+.++|+..|++
T Consensus 412 ~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~-v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~r 489 (579)
T KOG1125|consen 412 HIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ-VK-PNDYLLWNRLGATLANGNRSEEAISAYNR 489 (579)
T ss_pred HHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh-cC-CchHHHHHHhhHHhcCCcccHHHHHHHHH
Confidence 4455555553 344 56777765554 4567999999999999864 21 33688999999999999999999999999
Q ss_pred HHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHH---HHC------CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 025612 154 LKKEGLDPDT--RVYTEMIGVYLQVGMIDKAMETYETM---KAS------GCTPHKLTFTILIRNLENAGEEELVAAV 220 (250)
Q Consensus 154 m~~~g~~p~~--~ty~~li~~~~~~g~~~~a~~~~~~m---~~~------g~~p~~~ty~~li~~~~~~g~~~~a~~~ 220 (250)
..+ ++|+- +=||.-| +|...|.+++|.+.|-.. ... +-.++...|.+|=.+++-.++.|.+.+.
T Consensus 490 ALq--LqP~yVR~RyNlgI-S~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 490 ALQ--LQPGYVRVRYNLGI-SCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHh--cCCCeeeeehhhhh-hhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 887 46763 3455444 678889999999887653 332 1223456777777777777777755543
No 195
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.05 E-value=3.8 Score=35.86 Aligned_cols=136 Identities=17% Similarity=0.090 Sum_probs=92.8
Q ss_pred HhcCChhHHHHHHHHHHHhcCc-ccHH-------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--c
Q 025612 71 KLAKSSSKLEEGFQSRICRLLK-ADLL-------DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG--K 140 (250)
Q Consensus 71 ~~~~~~~~a~~l~~~m~~~~~~-~~~~-------~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~--~ 140 (250)
-+.+++.++.++|.+..+..-. |... .+|++|.- ++++..........+..|- ..|-.|..++. +
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~----s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGK----SAYLPLFKALVAYK 91 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCC----chHHHHHHHHHHHH
Confidence 3679999999999998754432 2222 37777764 4577777777777765553 34555555543 6
Q ss_pred CCCHHHHHHHHHHHHhC--CCCC------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC----CCCHHHHH
Q 025612 141 NKQIAMAEELFCELKKE--GLDP------------DTRVYTEMIGVYLQVGMIDKAMETYETMKASGC----TPHKLTFT 202 (250)
Q Consensus 141 ~~~~~~A~~~~~~m~~~--g~~p------------~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~----~p~~~ty~ 202 (250)
.+.+.+|.+.|..=.+. +-.| |.+-=++.+.++...|++.++..++++|...=+ ..|..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 67888888877665443 3322 223336677888999999999999998876533 48999999
Q ss_pred HHHHHHHhc
Q 025612 203 ILIRNLENA 211 (250)
Q Consensus 203 ~li~~~~~~ 211 (250)
.++-.+++.
T Consensus 172 ~~vlmlsrS 180 (549)
T PF07079_consen 172 RAVLMLSRS 180 (549)
T ss_pred HHHHHHhHH
Confidence 877666553
No 196
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.92 E-value=2.9 Score=34.03 Aligned_cols=100 Identities=19% Similarity=0.183 Sum_probs=55.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH-----HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 025612 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMIL-----MLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176 (250)
Q Consensus 102 ~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~-----~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 176 (250)
--..|+.+.|...|+...++.| ..|..+++.++. .|.-++++..|...|++..... .-|.+.-|.=.-+..-.
T Consensus 222 ~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYl 299 (366)
T KOG2796|consen 222 SMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYL 299 (366)
T ss_pred HHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHH
Confidence 3355777777777776654333 334444444432 2344566777777776655431 11333333323333345
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 025612 177 GMIDKAMETYETMKASGCTPHKLTFTILI 205 (250)
Q Consensus 177 g~~~~a~~~~~~m~~~g~~p~~~ty~~li 205 (250)
|+..+|.+.++.|++. .|...+-++++
T Consensus 300 g~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 300 GKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred HHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 7788888888888773 46666555444
No 197
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.86 E-value=1.4 Score=33.71 Aligned_cols=98 Identities=12% Similarity=0.050 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHHHHH
Q 025612 128 LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT--RVYTEMIGVYLQVGMIDKAMETYETMKAS---GCTPHKLTFT 202 (250)
Q Consensus 128 ~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~ty~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~ty~ 202 (250)
...+..+.+.|++.|+.+.|.+.|.++.+....|.. ..+-.+|+.....|++..+.....+.... |-.++...--
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 356778888888888888888888888876544443 34667778888888888888887766543 2222222222
Q ss_pred HHHHHH--HhcCCHHHHHHHHHHHH
Q 025612 203 ILIRNL--ENAGEEELVAAVRRDCI 225 (250)
Q Consensus 203 ~li~~~--~~~g~~~~a~~~~~~m~ 225 (250)
....++ ...+++..|-+.|-+..
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccC
Confidence 222222 23568888888776654
No 198
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.80 E-value=2.4 Score=34.89 Aligned_cols=87 Identities=18% Similarity=0.216 Sum_probs=69.5
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 025612 138 LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH-KLTFTILIRNLENAGEEEL 216 (250)
Q Consensus 138 ~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~ 216 (250)
..+.+++++|+..|.+..+- .+-|.+-|..=-.+|.+.|.++.|++=-+.-.. +-|. ..+|..|=.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHH
Confidence 45678999999999998774 233667777779999999999999877666555 3343 3789999999999999999
Q ss_pred HHHHHHHHHhc
Q 025612 217 VAAVRRDCIQY 227 (250)
Q Consensus 217 a~~~~~~m~~~ 227 (250)
|.+.|+...+.
T Consensus 168 A~~aykKaLel 178 (304)
T KOG0553|consen 168 AIEAYKKALEL 178 (304)
T ss_pred HHHHHHhhhcc
Confidence 99998876654
No 199
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.65 E-value=2.1 Score=37.49 Aligned_cols=123 Identities=21% Similarity=0.225 Sum_probs=89.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH-HHhCCCCCCHHHH-HHHHHHHHh
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCE-LKKEGLDPDTRVY-TEMIGVYLQ 175 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~-m~~~g~~p~~~ty-~~li~~~~~ 175 (250)
.|+..-+...++.|..+|-+.++..-+.+++..|+++|..++. |+..-|.++|+- |.. .||...| +--+.-+..
T Consensus 403 ~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~---f~d~~~y~~kyl~fLi~ 478 (660)
T COG5107 403 HLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK---FPDSTLYKEKYLLFLIR 478 (660)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh---CCCchHHHHHHHHHHHH
Confidence 5666667788899999999998633377889999999988874 666788888875 333 3455444 566777788
Q ss_pred cCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025612 176 VGMIDKAMETYETMKASGCTPH--KLTFTILIRNLENAGEEELVAAVRRDCI 225 (250)
Q Consensus 176 ~g~~~~a~~~~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~a~~~~~~m~ 225 (250)
.++-..|..+|+.-... +.-+ ...|..+|+-=+.-|+...|..+=+.|.
T Consensus 479 inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 479 INDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred hCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 89999999999843322 1112 3589999998888998877766555554
No 200
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.60 E-value=7.3 Score=37.57 Aligned_cols=160 Identities=10% Similarity=0.048 Sum_probs=102.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHh--cCcccHH-----HHHHHHHHcCCHHHHHHHHHHHHHh---CCCCCCH-HHH-HHHH
Q 025612 68 HAMKLAKSSSKLEEGFQSRICR--LLKADLL-----DTLTELRRQNELDLALKVFNFVRKE---VWYKPDL-SLY-SDMI 135 (250)
Q Consensus 68 ~~~~~~~~~~~a~~l~~~m~~~--~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~---~g~~~~~-~~y-~~li 135 (250)
..+...|++++|...+.+.... ...+... .+-......|+++.|...++....- .+..... ... ...+
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 3455569999999999887542 1112211 2445666889999999998887431 1111111 111 1123
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHH
Q 025612 136 LMLGKNKQIAMAEELFCELKKEGLDPDT---RVYTEMIGVYLQVGMIDKAMETYETMKAS----GCTPHK-LTFTILIRN 207 (250)
Q Consensus 136 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~---~ty~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~-~ty~~li~~ 207 (250)
..+...|+.+.|..++............ ..+..+...+...|+.++|...+++.... |..++. .+...+-.+
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 4556689999999998775542211111 11345667788899999999999887543 433322 456667778
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 025612 208 LENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 208 ~~~~g~~~~a~~~~~~m~~~ 227 (250)
+.+.|+.++|.+.+.+..+.
T Consensus 741 ~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88999999999998887654
No 201
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=93.31 E-value=0.76 Score=38.64 Aligned_cols=85 Identities=18% Similarity=0.103 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 025612 129 SLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208 (250)
Q Consensus 129 ~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~ 208 (250)
-+.+.-|.-+...|....|.++-.+.. .||..-|-.-|.+|+..|+|++..++... +-++.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 345666778888899999988877663 37999999999999999999998876542 22458899999999
Q ss_pred HhcCCHHHHHHHHHH
Q 025612 209 ENAGEEELVAAVRRD 223 (250)
Q Consensus 209 ~~~g~~~~a~~~~~~ 223 (250)
.+.|...+|..+...
T Consensus 248 ~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 248 LKYGNKKEASKYIPK 262 (319)
T ss_pred HHCCCHHHHHHHHHh
Confidence 999999999988877
No 202
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.24 E-value=0.81 Score=37.98 Aligned_cols=94 Identities=16% Similarity=0.189 Sum_probs=65.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEV--WYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYL 174 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~--g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~ 174 (250)
.++..-....+++.+...+-.++.+. ...|+...| +.++-|.+ -++++++-++..=.+-|+-||.+|++.+|..+.
T Consensus 69 ~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~fl 146 (418)
T KOG4570|consen 69 RLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFL 146 (418)
T ss_pred hhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHHc-cChHHHHHHHhCcchhccccchhhHHHHHHHHH
Confidence 45555556678888888888886421 223332221 22333332 356788888887778899999999999999999
Q ss_pred hcCChHHHHHHHHHHHHC
Q 025612 175 QVGMIDKAMETYETMKAS 192 (250)
Q Consensus 175 ~~g~~~~a~~~~~~m~~~ 192 (250)
+.+++.+|..+..+|...
T Consensus 147 k~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 147 KKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hcccHHHHHHHHHHHHHH
Confidence 999999999988777654
No 203
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.10 E-value=4 Score=39.39 Aligned_cols=49 Identities=6% Similarity=0.017 Sum_probs=23.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHH-HHHHHHHHcCCHHHH
Q 025612 63 AIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLL-DTLTELRRQNELDLA 111 (250)
Q Consensus 63 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-~ll~~~~~~~~~~~a 111 (250)
+..+++...+.|.+++....+.-..+..-.|.+. .||-+|++.+++.+.
T Consensus 1136 y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~el 1185 (1666)
T KOG0985|consen 1136 YLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTEL 1185 (1666)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHH
Confidence 3344555555555555555444444444444444 355555555554443
No 204
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.07 E-value=4.3 Score=33.40 Aligned_cols=105 Identities=10% Similarity=-0.011 Sum_probs=74.6
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHH
Q 025612 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKE-GLDPDTRVYTEMIGVYLQ---VGMIDKAMETYETMKASGCTPHKLT 200 (250)
Q Consensus 125 ~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~ty~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~t 200 (250)
+-|...|--|=..|.+.|+.+.|..-|..-..- |- |...+..+-.++.. ..+..++.++|+++.... .-|..+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~--n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD--NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHH
Confidence 346888999999999999999999999876553 43 33344444333333 334568888999887742 225566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCch
Q 025612 201 FTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232 (250)
Q Consensus 201 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd 232 (250)
-..|--.+...|++.+|...|+.|.+..-.-+
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 66777788899999999999999987655433
No 205
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.84 E-value=2.9 Score=33.91 Aligned_cols=95 Identities=17% Similarity=0.093 Sum_probs=69.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcC----cccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 025612 63 AIQAVHAMKLAKSSSKLEEGFQSRICRLL----KADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPD-LSLYSDMIL 136 (250)
Q Consensus 63 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~----~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~~~y~~li~ 136 (250)
.+...-.+.+.|++..|...|...++..- .|+.. =|-.++...|+++.|-.+|..+.++.+-.|- ....=-|-.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 55555566677889999999999876442 23322 3788888999999999999998765443333 355666667
Q ss_pred HHHcCCCHHHHHHHHHHHHhC
Q 025612 137 MLGKNKQIAMAEELFCELKKE 157 (250)
Q Consensus 137 ~~~~~~~~~~A~~~~~~m~~~ 157 (250)
...+.|+.++|..+|++..+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 778888889999888888764
No 206
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=92.47 E-value=5.6 Score=38.26 Aligned_cols=81 Identities=10% Similarity=0.086 Sum_probs=43.5
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCCHHHH
Q 025612 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL--ENAGEEELV 217 (250)
Q Consensus 140 ~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~--~~~g~~~~a 217 (250)
+.+++..|..-|+.-..- =+-|...|..+..+|.+.|.+..|.++|++... +.|+. +|.-.-.+- +..|.++++
T Consensus 574 ea~n~h~aV~~fQsALR~-dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRT-DPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred CccchhhHHHHHHHHhcC-CchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHHhhhHHHH
Confidence 344444444444433221 012556677777777777777777777776655 34543 333333332 234566666
Q ss_pred HHHHHHH
Q 025612 218 AAVRRDC 224 (250)
Q Consensus 218 ~~~~~~m 224 (250)
...+...
T Consensus 650 ld~l~~i 656 (1238)
T KOG1127|consen 650 LDALGLI 656 (1238)
T ss_pred HHHHHHH
Confidence 5555544
No 207
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=92.36 E-value=8.7 Score=35.14 Aligned_cols=102 Identities=15% Similarity=0.109 Sum_probs=56.9
Q ss_pred CCCHHHHH--HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 025612 125 KPDLSLYS--DMILMLGKNKQIAMAEELFCELKKEGLDPDTR-VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF 201 (250)
Q Consensus 125 ~~~~~~y~--~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty 201 (250)
.|++..|+ -++..|-+.|+++.|...++....+ .|+.+ -|-+=-+.+..+|++++|..++++..+.. .||.+.=
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~IN 442 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAIN 442 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHH
Confidence 44444443 3445566667777777766665553 33332 22233356666677777777776665543 2444443
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 025612 202 TILIRNLENAGEEELVAAVRRDCIQYVE 229 (250)
Q Consensus 202 ~~li~~~~~~g~~~~a~~~~~~m~~~g~ 229 (250)
.--.+-..+++++++|+++.....+.|.
T Consensus 443 sKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 443 SKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 3444455566667777766666665554
No 208
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.15 E-value=3 Score=34.23 Aligned_cols=81 Identities=14% Similarity=0.175 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----ccCCchHHHHHH
Q 025612 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ-----YVEFPERFLEEV 238 (250)
Q Consensus 164 ~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~pd~~~~~~ 238 (250)
.++..++..+...|+.+.+.+.+++..... .-|...|..++.+|.+.|+...|.+.++.+.+ .|+.|..-+..+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 456778888889999999999999998753 34778999999999999999999999988765 599888777666
Q ss_pred HHhhhcc
Q 025612 239 YQKHRKT 245 (250)
Q Consensus 239 ~~~~~~~ 245 (250)
+.+-.++
T Consensus 233 y~~~~~~ 239 (280)
T COG3629 233 YEEILRQ 239 (280)
T ss_pred HHHHhcc
Confidence 6655443
No 209
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=91.79 E-value=8.2 Score=33.58 Aligned_cols=144 Identities=14% Similarity=0.063 Sum_probs=83.0
Q ss_pred HHhcCChhHHHHHHHHHHHhcCcccHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHcC
Q 025612 70 MKLAKSSSKLEEGFQSRICRLLKADLL----DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSL----YSDMILMLGKN 141 (250)
Q Consensus 70 ~~~~~~~~~a~~l~~~m~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~----y~~li~~~~~~ 141 (250)
.+-.++...+...+--......-|+.. ++-+.+...|+.++|...|++.+- +.|+..+ |.-| +++.
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~---~dpy~i~~MD~Ya~L---L~~e 279 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC---ANPDNVEAMDLYAVL---LGQE 279 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh---CChhhhhhHHHHHHH---HHhc
Confidence 333455556666665555555555544 466667778888888888887742 2343222 2222 2344
Q ss_pred CCHHHHHHHHHHHHhC------------------------------CCCCCHHHHHHHH---HHHHhcCChHHHHHHHHH
Q 025612 142 KQIAMAEELFCELKKE------------------------------GLDPDTRVYTEMI---GVYLQVGMIDKAMETYET 188 (250)
Q Consensus 142 ~~~~~A~~~~~~m~~~------------------------------g~~p~~~ty~~li---~~~~~~g~~~~a~~~~~~ 188 (250)
|+.+....+-..+... .+..|....-.+| +.+...|+.++|.--|+.
T Consensus 280 g~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~ 359 (564)
T KOG1174|consen 280 GGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRT 359 (564)
T ss_pred cCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHH
Confidence 4444444433333221 1222333333333 345556778888777776
Q ss_pred HHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 025612 189 MKASGCTP-HKLTFTILIRNLENAGEEELVAAVR 221 (250)
Q Consensus 189 m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~~ 221 (250)
-.. +.| +...|..|+..|...|++.+|.-+-
T Consensus 360 Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~A 391 (564)
T KOG1174|consen 360 AQM--LAPYRLEIYRGLFHSYLAQKRFKEANALA 391 (564)
T ss_pred HHh--cchhhHHHHHHHHHHHHhhchHHHHHHHH
Confidence 554 344 6688999999999999988875443
No 210
>PLN02789 farnesyltranstransferase
Probab=91.78 E-value=7.1 Score=32.87 Aligned_cols=123 Identities=10% Similarity=0.030 Sum_probs=74.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--h
Q 025612 104 RQNELDLALKVFNFVRKEVWYKPD-LSLYSDMILMLGKNK-QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM--I 179 (250)
Q Consensus 104 ~~~~~~~a~~~~~~m~~~~g~~~~-~~~y~~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~--~ 179 (250)
..++.++|+.+.+++.+. .|+ ...|+.-=.++.+.| +++++++.++++.+..- -+..+|+.--..+.+.|. .
T Consensus 49 ~~e~serAL~lt~~aI~l---nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 49 SDERSPRALDLTADVIRL---NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred cCCCCHHHHHHHHHHHHH---CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhh
Confidence 455667777777776642 333 334544444445555 56778877777766422 233445544333444454 2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCc
Q 025612 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFP 231 (250)
Q Consensus 180 ~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 231 (250)
++++.+++.+.+..- -|...|+..--++.+.|+++++.+.++.+.+.+...
T Consensus 125 ~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N 175 (320)
T PLN02789 125 NKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN 175 (320)
T ss_pred HHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc
Confidence 566777777766432 256777777777777777888888888777765553
No 211
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=91.73 E-value=3.8 Score=33.68 Aligned_cols=127 Identities=11% Similarity=0.048 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC-C-CHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 025612 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN-K-QIAMAEELFCELKK-EGLDPDTRVYTEMIGVYLQVGMIDKAME 184 (250)
Q Consensus 108 ~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~-~-~~~~A~~~~~~m~~-~g~~p~~~ty~~li~~~~~~g~~~~a~~ 184 (250)
+-+|+++|+...-+..+--|..+-..|++..... + ....-.++.+-+.. .|-.++..+.-.+|..+++.+++.+.++
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4566666664311123555777788888877762 2 23333444444443 3678899999999999999999999999
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHhccCCchHH
Q 025612 185 TYETMKAS-GCTPHKLTFTILIRNLENAGEEELVAAVRRD-----CIQYVEFPERF 234 (250)
Q Consensus 185 ~~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~-----m~~~g~~pd~~ 234 (250)
+++.-... +-.-|...|..+|+.....|+..-...+..+ +++.|+..+.-
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~ 279 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDE 279 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHH
Confidence 99887665 6667889999999999999999988888776 35667764433
No 212
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=91.73 E-value=6.2 Score=32.49 Aligned_cols=107 Identities=12% Similarity=-0.027 Sum_probs=76.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHH
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK---NKQIAMAEELFCELKKEGLDPDTRV-YTEMIGV 172 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~t-y~~li~~ 172 (250)
-|=.+|.+.|+.+.|..-|....+-.|-+ ...+..+-.++.. ..+..++..+|+++... .|+.++ -.-|-..
T Consensus 161 ~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n--~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral~lLA~~ 236 (287)
T COG4235 161 LLGRAYMALGRASDALLAYRNALRLAGDN--PEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRALSLLAFA 236 (287)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence 37778899999999999999987655544 4445555444433 33467899999998874 455544 4444578
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 025612 173 YLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209 (250)
Q Consensus 173 ~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~ 209 (250)
+...|++.+|...|+.|.+.. |....+..+|+...
T Consensus 237 afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~~i 271 (287)
T COG4235 237 AFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIERSI 271 (287)
T ss_pred HHHcccHHHHHHHHHHHHhcC--CCCCchHHHHHHHH
Confidence 889999999999999999863 55556666665543
No 213
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.70 E-value=2 Score=37.87 Aligned_cols=132 Identities=14% Similarity=0.117 Sum_probs=74.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH-------HhCC----------CCCC
Q 025612 100 TELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCEL-------KKEG----------LDPD 162 (250)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m-------~~~g----------~~p~ 162 (250)
....-.++++++.+..+.=.--..+ +..-.+.+++.+-+.|..+.|+.+-..- .+.| -..+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~ 346 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDD 346 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCST
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCc
Confidence 3444567788766665411000112 2456888999999999998888764332 2211 2346
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCchHHHHHHHHhh
Q 025612 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVYQKH 242 (250)
Q Consensus 163 ~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~~~~~ 242 (250)
...|..|-....+.|+++-|.+.|++..+ |..|+=.|.-.|+.+...++-+.....|-..-+|...+..-.
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~lgd 417 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALLLGD 417 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHcCC
Confidence 77788888888888888888887776543 445555666667776666666666666655545554444333
No 214
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.68 E-value=0.53 Score=25.36 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 025612 166 YTEMIGVYLQVGMIDKAMETYET 188 (250)
Q Consensus 166 y~~li~~~~~~g~~~~a~~~~~~ 188 (250)
|+.|-..|.+.|++++|.++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555555566666666665555
No 215
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=91.22 E-value=12 Score=34.51 Aligned_cols=163 Identities=9% Similarity=0.006 Sum_probs=91.8
Q ss_pred HHHhcCChhHHHHHHHHHHHhcCcccHH-----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 025612 69 AMKLAKSSSKLEEGFQSRICRLLKADLL-----DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ 143 (250)
Q Consensus 69 ~~~~~~~~~~a~~l~~~m~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~ 143 (250)
.|-..|.+.-+..+....+.-|+.-.-. .--+.|.+.+.++-|..+|....+ .++-+...|......=-..|.
T Consensus 488 ~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq--vfp~k~slWlra~~~ek~hgt 565 (913)
T KOG0495|consen 488 ACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ--VFPCKKSLWLRAAMFEKSHGT 565 (913)
T ss_pred HHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh--hccchhHHHHHHHHHHHhcCc
Confidence 3344444444444444444444332111 233445566666667777766542 234456666666666666677
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 025612 144 IAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223 (250)
Q Consensus 144 ~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~ 223 (250)
.++...+|++.... ++-...-|--...-+-.+|++..|..++...-+.+- -+...|-.-++.-.++..++.|..+|..
T Consensus 566 ~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llak 643 (913)
T KOG0495|consen 566 RESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAK 643 (913)
T ss_pred HHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 77777777776654 333344454445556667777777777776665431 1446666667777777777777777766
Q ss_pred HHhccCCchHHH
Q 025612 224 CIQYVEFPERFL 235 (250)
Q Consensus 224 m~~~g~~pd~~~ 235 (250)
....+=.+-.++
T Consensus 644 ar~~sgTeRv~m 655 (913)
T KOG0495|consen 644 ARSISGTERVWM 655 (913)
T ss_pred HhccCCcchhhH
Confidence 655433333333
No 216
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=91.21 E-value=9.5 Score=33.20 Aligned_cols=63 Identities=8% Similarity=-0.049 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 025612 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEF 230 (250)
Q Consensus 166 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 230 (250)
-+.+..-|...|..+++..+++.-.. ..||....+.|-+.+...+.+.+|++-|....+.+-.
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 45555677778999999999888766 3589988889888888888888888887766554433
No 217
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.09 E-value=4.4 Score=29.40 Aligned_cols=118 Identities=14% Similarity=0.122 Sum_probs=71.5
Q ss_pred HhcCChhHHHHHHHHHHHhcCc--ccHH-----------H---HHHHHH------HcCCHHHHHHHHHHHHHhCCCCCCH
Q 025612 71 KLAKSSSKLEEGFQSRICRLLK--ADLL-----------D---TLTELR------RQNELDLALKVFNFVRKEVWYKPDL 128 (250)
Q Consensus 71 ~~~~~~~~a~~l~~~m~~~~~~--~~~~-----------~---ll~~~~------~~~~~~~a~~~~~~m~~~~g~~~~~ 128 (250)
.-.|..++..++..+.....-. .++. . .++..+ .+|++......+..+- -+.
T Consensus 13 ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n------~~s 86 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRN------KLS 86 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---------
T ss_pred HHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhc------chH
Confidence 3457777777777776543221 1221 1 222222 2344555555554432 134
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 025612 129 SLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCT 195 (250)
Q Consensus 129 ~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 195 (250)
.-.+.-++.+.+.|+-+.-.++++++.. +-.++....-.+-.+|.+.|+..++-+++.+.-+.|++
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 5667888999999999999999999865 44678888888899999999999999999998888875
No 218
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=90.95 E-value=8.3 Score=32.10 Aligned_cols=149 Identities=9% Similarity=0.072 Sum_probs=88.7
Q ss_pred HHHHHhcCChh---HHHHHHHHHHHh------cCcccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 025612 67 VHAMKLAKSSS---KLEEGFQSRICR------LLKADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMIL 136 (250)
Q Consensus 67 l~~~~~~~~~~---~a~~l~~~m~~~------~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~ 136 (250)
+...| |+.+ .|.+.|...... .++|+.. .++....+.|..+.-..+++...+ ..+...-+.++.
T Consensus 136 ~~~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~----~~~~~~k~~~l~ 209 (324)
T PF11838_consen 136 LSLAC--GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN----STSPEEKRRLLS 209 (324)
T ss_dssp HHHHH--T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT----TSTHHHHHHHHH
T ss_pred HHHhc--cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc----cCCHHHHHHHHH
Confidence 44444 4444 778888887764 3456665 678888888887776666666643 357888999999
Q ss_pred HHHcCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCh--HHHHHHHHH----HHHCCCCCCHHHHHHHHHHHH
Q 025612 137 MLGKNKQIAMAEELFCELKKEG-LDPDTRVYTEMIGVYLQVGMI--DKAMETYET----MKASGCTPHKLTFTILIRNLE 209 (250)
Q Consensus 137 ~~~~~~~~~~A~~~~~~m~~~g-~~p~~~ty~~li~~~~~~g~~--~~a~~~~~~----m~~~g~~p~~~ty~~li~~~~ 209 (250)
+++...+.+...++++.....+ +++.. ...++.++...+.. +.+++++.. +.+ ....+..+...++..+.
T Consensus 210 aLa~~~d~~~~~~~l~~~l~~~~v~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~-~~~~~~~~~~~~~~~~~ 286 (324)
T PF11838_consen 210 ALACSPDPELLKRLLDLLLSNDKVRSQD--IRYVLAGLASSNPVGRDLAWEFFKENWDAIIK-KFGTNSSALSRVIKSFA 286 (324)
T ss_dssp HHTT-S-HHHHHHHHHHHHCTSTS-TTT--HHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHC-HC-TTSHCCHHHHHCCC
T ss_pred hhhccCCHHHHHHHHHHHcCCcccccHH--HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHH-HhcCCChHHHHHHHHHh
Confidence 9999999999999999988864 55544 34445555534443 677776643 322 22233235555555543
Q ss_pred h----cCCHHHHHHHHHHH
Q 025612 210 N----AGEEELVAAVRRDC 224 (250)
Q Consensus 210 ~----~g~~~~a~~~~~~m 224 (250)
. ....++++++|+.-
T Consensus 287 ~~~~t~~~~~~~~~f~~~~ 305 (324)
T PF11838_consen 287 GNFSTEEQLDELEEFFEDK 305 (324)
T ss_dssp TT--SHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHhhC
Confidence 3 33455555555443
No 219
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.86 E-value=0.071 Score=38.92 Aligned_cols=86 Identities=9% Similarity=0.137 Sum_probs=57.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 176 (250)
.+|..+.+.+.++....+++.+.+ .+...+....|.++..|++.+..++..++++. . +..-...++..|-+.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~-~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~--~-----~~yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVK-ENKENNPDLHTLLLELYIKYDPYEKLLEFLKT--S-----NNYDLDKALRLCEKH 83 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHH-TSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS--S-----SSS-CTHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHh-cccccCHHHHHHHHHHHHhcCCchHHHHHccc--c-----cccCHHHHHHHHHhc
Confidence 466667777777777777777764 44455677778888888888777777777661 1 223335667777777
Q ss_pred CChHHHHHHHHHHH
Q 025612 177 GMIDKAMETYETMK 190 (250)
Q Consensus 177 g~~~~a~~~~~~m~ 190 (250)
|.++++.-++.++-
T Consensus 84 ~l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 84 GLYEEAVYLYSKLG 97 (143)
T ss_dssp TSHHHHHHHHHCCT
T ss_pred chHHHHHHHHHHcc
Confidence 77777777777654
No 220
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.48 E-value=5.4 Score=29.19 Aligned_cols=80 Identities=11% Similarity=0.031 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhcCc----ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 025612 62 EAIQAVHAMKLAKSSSKLEEGFQSRICRLLK----ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMIL 136 (250)
Q Consensus 62 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~----~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~ 136 (250)
+...--....+.|++++|.+.|+.+..+--. +... .++.++.+.+++++|...++...+-+--.|+ ..|--.+.
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~ 90 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHH
Confidence 3344455566789999999999998754322 1122 5999999999999999999998764433443 45666666
Q ss_pred HHHcCC
Q 025612 137 MLGKNK 142 (250)
Q Consensus 137 ~~~~~~ 142 (250)
+++.-.
T Consensus 91 gL~~~~ 96 (142)
T PF13512_consen 91 GLSYYE 96 (142)
T ss_pred HHHHHH
Confidence 655433
No 221
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.34 E-value=0.8 Score=24.62 Aligned_cols=26 Identities=8% Similarity=0.043 Sum_probs=21.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH
Q 025612 130 LYSDMILMLGKNKQIAMAEELFCELK 155 (250)
Q Consensus 130 ~y~~li~~~~~~~~~~~A~~~~~~m~ 155 (250)
+|+.|-+.|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47788899999999999999998843
No 222
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=90.23 E-value=5.4 Score=28.75 Aligned_cols=123 Identities=13% Similarity=0.118 Sum_probs=84.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhcC-cccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 025612 65 QAVHAMKLAKSSSKLEEGFQSRICRLL-KADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNK 142 (250)
Q Consensus 65 ~ll~~~~~~~~~~~a~~l~~~m~~~~~-~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~ 142 (250)
.++..+...+.+..+..+++.+...+. .++.. .++..|++.+. .+..+.+.. ..+......+++.|-+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~~-~~ll~~l~~-------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDP-QKEIERLDN-------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHCH-HHHHHHHHh-------ccccCCHHHHHHHHHHcC
Confidence 348888888999999999999887753 33344 68888887643 334444442 123344556888999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 025612 143 QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV-GMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210 (250)
Q Consensus 143 ~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~ 210 (250)
.++++.-++..+.. |...+..+... ++.+.|.+++.+- -+...|..++..+..
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 99999999988754 33344444444 8888888887751 266788888877764
No 223
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.96 E-value=5.8 Score=32.67 Aligned_cols=113 Identities=11% Similarity=0.132 Sum_probs=83.6
Q ss_pred HHHHHHH-c-CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 025612 98 TLTELRR-Q-NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE-GLDPDTRVYTEMIGVYL 174 (250)
Q Consensus 98 ll~~~~~-~-~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~ty~~li~~~~ 174 (250)
+++.... . .....-.++.+-+....+-.++..+--++|..++..+++.+-.++++.-... +..-|...|..+|..-.
T Consensus 170 LL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~ 249 (292)
T PF13929_consen 170 LLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIV 249 (292)
T ss_pred HHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHH
Confidence 5555554 2 2344445555666555667888999999999999999999999999876554 66779999999999999
Q ss_pred hcCChHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHHHh
Q 025612 175 QVGMIDKAMETYET-----MKASGCTPHKLTFTILIRNLEN 210 (250)
Q Consensus 175 ~~g~~~~a~~~~~~-----m~~~g~~p~~~ty~~li~~~~~ 210 (250)
..|+..-+..+.++ +++.|+..+...-..+-+.+.+
T Consensus 250 ~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 250 ESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 99999888877764 3556777666665555544433
No 224
>PRK15331 chaperone protein SicA; Provisional
Probab=89.92 E-value=4.5 Score=30.37 Aligned_cols=91 Identities=19% Similarity=0.075 Sum_probs=60.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 177 (250)
.-.-+...|++++|..+|.-+.- .+. -+..-|..|-.+|-..+++++|..+|...-.-+. -|...+--.-.+|...|
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~-~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCI-YDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH-hCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhC
Confidence 33344577899999999998764 221 1333455666666677888999888876544321 23333444567778889
Q ss_pred ChHHHHHHHHHHHH
Q 025612 178 MIDKAMETYETMKA 191 (250)
Q Consensus 178 ~~~~a~~~~~~m~~ 191 (250)
+.+.|...|+...+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999988887776
No 225
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=89.65 E-value=4.4 Score=35.91 Aligned_cols=77 Identities=21% Similarity=0.156 Sum_probs=54.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHH
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLD-PDTRVYTEMIGVYL 174 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~ty~~li~~~~ 174 (250)
+-.++-+.|+.++|.+.|.+|.+.....-.......||.+|...+.+.++..++.+-.+-..+ --...|++.+-.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 444455779999999999998764433334567788999999999999999999887543322 23466777664433
No 226
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.56 E-value=3.9 Score=31.16 Aligned_cols=64 Identities=14% Similarity=0.179 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 025612 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK--LTFTILIRNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 164 ~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
..+..+..-|++.|+.++|.+.|.++++....|.. ..+-.+|+...-.+++..+.....+....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56888899999999999999999999987655544 56788999999999999999888777654
No 227
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.54 E-value=7.5 Score=29.37 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025612 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCI 225 (250)
Q Consensus 166 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~ 225 (250)
+..++..+...|++-+|.++.+..... +......++++..+.+|...-..+++-..
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444455555555555555555443221 11122344555555555444444444333
No 228
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.46 E-value=7.3 Score=29.15 Aligned_cols=111 Identities=21% Similarity=0.290 Sum_probs=63.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPD---LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYL 174 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~---~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~ 174 (250)
++..-.+.++.+++..+++-++- +.|. ..++... .+.+.|++.+|..+|+++.+.+ |...--.+|+..|.
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL 88 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHH
Confidence 44445577888888888888864 3454 3333333 3567788999999998887652 33333344444444
Q ss_pred hcCChHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 025612 175 QVGMIDKAMETY-ETMKASGCTPHKLTFTILIRNLENAGEEELVAA 219 (250)
Q Consensus 175 ~~g~~~~a~~~~-~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 219 (250)
. ..-|-.++.+ +++.+.+-.|+. ..+++.+....+...|.+
T Consensus 89 ~-~~~D~~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 89 Y-ALGDPSWRRYADEVLESGADPDA---RALVRALLARADLEPAHE 130 (160)
T ss_pred H-HcCChHHHHHHHHHHhcCCChHH---HHHHHHHHHhccccchhh
Confidence 3 3344455554 446666533333 245555555555444443
No 229
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.43 E-value=13 Score=32.03 Aligned_cols=96 Identities=14% Similarity=0.059 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 025612 128 LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN 207 (250)
Q Consensus 128 ~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~ 207 (250)
..+++.|.-+|.+.+++..|+..-+...+.+ .+|.-.-=-=-.+|...|+++.|+..|+.+.+ +.|+....+.=|..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIK 333 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHH
Confidence 4578888999999999999998888776642 23433333334567778999999999999988 56877666665555
Q ss_pred HHh-cCCHH-HHHHHHHHHHh
Q 025612 208 LEN-AGEEE-LVAAVRRDCIQ 226 (250)
Q Consensus 208 ~~~-~g~~~-~a~~~~~~m~~ 226 (250)
|.+ ..+.+ ...++|..|-.
T Consensus 334 l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 554 33333 34777877753
No 230
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=89.39 E-value=13 Score=32.09 Aligned_cols=99 Identities=13% Similarity=-0.042 Sum_probs=56.6
Q ss_pred cCCCcHHHHHHHHHHHhcCChhHHHHHHHHHHHhcC-cccHH-----HHHHHHHH---cCCHHHHHHHHHHHHHhCCCCC
Q 025612 56 SRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLL-KADLL-----DTLTELRR---QNELDLALKVFNFVRKEVWYKP 126 (250)
Q Consensus 56 ~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~-~~~~~-----~ll~~~~~---~~~~~~a~~~~~~m~~~~g~~~ 126 (250)
-+.+.|.+...+...|..|+|+.|+++.+.-....+ .++.. .|+.+-+- .-+...|...-.+- ..+.|
T Consensus 184 Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a---~KL~p 260 (531)
T COG3898 184 APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEA---NKLAP 260 (531)
T ss_pred ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH---hhcCC
Confidence 677889999999999999999999999998765443 34433 23333221 11233333332222 22444
Q ss_pred CHHHHHH-HHHHHHcCCCHHHHHHHHHHHHhC
Q 025612 127 DLSLYSD-MILMLGKNKQIAMAEELFCELKKE 157 (250)
Q Consensus 127 ~~~~y~~-li~~~~~~~~~~~A~~~~~~m~~~ 157 (250)
|...--. --+.|.+.|++.++-.+++.+=+.
T Consensus 261 dlvPaav~AAralf~d~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 261 DLVPAAVVAARALFRDGNLRKGSKILETAWKA 292 (531)
T ss_pred ccchHHHHHHHHHHhccchhhhhhHHHHHHhc
Confidence 4322211 124455666666666666665544
No 231
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=89.35 E-value=8.5 Score=29.78 Aligned_cols=157 Identities=11% Similarity=0.026 Sum_probs=100.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHH---HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 025612 63 AIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLL---DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139 (250)
Q Consensus 63 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~---~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~ 139 (250)
+-.+..+..+.=++++..+-..+ +-...|++. .|-.++...|+..+|...|++-. +.-+--|....-.+-++..
T Consensus 59 a~~~~~a~~q~ldP~R~~Rea~~--~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqf 135 (251)
T COG4700 59 AHTLLMALQQKLDPERHLREATE--ELAIAPTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQF 135 (251)
T ss_pred hHHHHHHHHHhcChhHHHHHHHH--HHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHH
Confidence 34445666666666654433222 222334443 68889999999999999999885 2444556777777778888
Q ss_pred cCCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 025612 140 KNKQIAMAEELFCELKKE---GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216 (250)
Q Consensus 140 ~~~~~~~A~~~~~~m~~~---g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 216 (250)
..+++..|...++.+-+. +-.|| +.-.+-+.|...|...+|+.-|+..... -|+...-..--..+++.|+.++
T Consensus 136 a~~~~A~a~~tLe~l~e~~pa~r~pd--~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~e 211 (251)
T COG4700 136 AIQEFAAAQQTLEDLMEYNPAFRSPD--GHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLRE 211 (251)
T ss_pred hhccHHHHHHHHHHHhhcCCccCCCC--chHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhH
Confidence 889999999999887664 23333 3445567888889999999999988875 3444332222233445554444
Q ss_pred ----HHHHHHHHHh
Q 025612 217 ----VAAVRRDCIQ 226 (250)
Q Consensus 217 ----a~~~~~~m~~ 226 (250)
..++++...+
T Consensus 212 a~aq~~~v~d~~~r 225 (251)
T COG4700 212 ANAQYVAVVDTAKR 225 (251)
T ss_pred HHHHHHHHHHHHHh
Confidence 3455555543
No 232
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=89.25 E-value=15 Score=35.03 Aligned_cols=144 Identities=15% Similarity=0.038 Sum_probs=86.1
Q ss_pred hcCChhHHHHHHHHHHHhcCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 025612 72 LAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELF 151 (250)
Q Consensus 72 ~~~~~~~a~~l~~~m~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~ 151 (250)
..|..++|..++++.++..+ |=..|-..|.+++|.++-+.=- .+. =..||-.--..+-..++++.|++.|
T Consensus 812 eLgMlEeA~~lYr~ckR~DL------lNKlyQs~g~w~eA~eiAE~~D---RiH-Lr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRYDL------LNKLYQSQGMWSEAFEIAETKD---RIH-LRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred HHhhHHHHHHHHHHHHHHHH------HHHHHHhcccHHHHHHHHhhcc---cee-hhhhHHHHHHHHHhhccHHHHHHHH
Confidence 33566666666665543321 2334456678888877765421 111 1345655555555667777776666
Q ss_pred HHHH-----------hC--------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--------------------
Q 025612 152 CELK-----------KE--------GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS-------------------- 192 (250)
Q Consensus 152 ~~m~-----------~~--------g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~-------------------- 192 (250)
++-. +. .-+.|...|...-...-..|++|.|+.+|...++.
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA 961 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIA 961 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHH
Confidence 5421 11 01235555666666666788888888888776541
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025612 193 GCTPHKLTFTILIRNLENAGEEELVAAVRRDCI 225 (250)
Q Consensus 193 g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~ 225 (250)
.-.-|....-.|-+.|-+.|++-+|..+|-...
T Consensus 962 ~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 962 EESGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 113355566677888888888888888876553
No 233
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.20 E-value=1.3 Score=24.17 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHH
Q 025612 164 RVYTEMIGVYLQVGMIDKAMETYETM 189 (250)
Q Consensus 164 ~ty~~li~~~~~~g~~~~a~~~~~~m 189 (250)
.+++.|-..|...|++++|..++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHH
Confidence 34555555555555555555555544
No 234
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.16 E-value=11 Score=30.89 Aligned_cols=157 Identities=17% Similarity=0.046 Sum_probs=95.4
Q ss_pred HhcCChhHHHHHHHHHHHhc--CcccHH-H-------HHHHHHHcC-CHHHHHHHHHHHHHh-------CCCCCC-----
Q 025612 71 KLAKSSSKLEEGFQSRICRL--LKADLL-D-------TLTELRRQN-ELDLALKVFNFVRKE-------VWYKPD----- 127 (250)
Q Consensus 71 ~~~~~~~~a~~l~~~m~~~~--~~~~~~-~-------ll~~~~~~~-~~~~a~~~~~~m~~~-------~g~~~~----- 127 (250)
-+.|+.+.|...+.+..... ..|+.. . +-....+.+ +++.|...+++..+- ....|+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 36799999999999986533 345444 2 233333556 899998888875431 123333
Q ss_pred HHHHHHHHHHHHcCCCHH---HHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHH
Q 025612 128 LSLYSDMILMLGKNKQIA---MAEELFCELKKE-GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG--CTPHKLTF 201 (250)
Q Consensus 128 ~~~y~~li~~~~~~~~~~---~A~~~~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~ty 201 (250)
..+...++.+|...+..+ +|.++++.+... |-+| ..|-.=|..+.+.++.+++.+++.+|...- ...+....
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~--~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKP--EVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCc--HHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHH
Confidence 356677888888877755 556666666543 3333 333344555556899999999999998762 23333334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 025612 202 TILIRNLENAGEEELVAAVRRDCIQYVEF 230 (250)
Q Consensus 202 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 230 (250)
...++-+..... ..|...++.+...-+.
T Consensus 162 l~~i~~l~~~~~-~~a~~~ld~~l~~r~~ 189 (278)
T PF08631_consen 162 LHHIKQLAEKSP-ELAAFCLDYLLLNRFK 189 (278)
T ss_pred HHHHHHHHhhCc-HHHHHHHHHHHHHHhC
Confidence 444444455444 4566666666544333
No 235
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=89.10 E-value=15 Score=32.37 Aligned_cols=138 Identities=16% Similarity=0.207 Sum_probs=101.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcC-cccHH--HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHcC
Q 025612 66 AVHAMKLAKSSSKLEEGFQSRICRLL-KADLL--DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLY-SDMILMLGKN 141 (250)
Q Consensus 66 ll~~~~~~~~~~~a~~l~~~m~~~~~-~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y-~~li~~~~~~ 141 (250)
.+....+..-.+.|..+|.+..+.++ .+++. ...-.+...|+...|..+|+.-.+. -||...| +-.+..+.+.
T Consensus 403 ~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~---f~d~~~y~~kyl~fLi~i 479 (660)
T COG5107 403 HLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLK---FPDSTLYKEKYLLFLIRI 479 (660)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHh---CCCchHHHHHHHHHHHHh
Confidence 47777777888999999999999884 45555 3333455678888999999985432 3454444 6788888999
Q ss_pred CCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 025612 142 KQIAMAEELFCELKKEGLDPD--TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209 (250)
Q Consensus 142 ~~~~~A~~~~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~ 209 (250)
++-+.|..+|+.-.++ +.-+ ...|..+|..=...|++..+..+=++|.+ +-|-..+...+.+-|.
T Consensus 480 nde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 480 NDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred CcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 9999999999954432 2223 56799999999999999999888888877 3566656555555554
No 236
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.86 E-value=1.3 Score=24.10 Aligned_cols=29 Identities=17% Similarity=0.070 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 025612 128 LSLYSDMILMLGKNKQIAMAEELFCELKK 156 (250)
Q Consensus 128 ~~~y~~li~~~~~~~~~~~A~~~~~~m~~ 156 (250)
..+++.|-..|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 46789999999999999999999988654
No 237
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.80 E-value=2.2 Score=39.47 Aligned_cols=105 Identities=18% Similarity=0.134 Sum_probs=85.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 176 (250)
..+..+..-|+..+|.++-.+.+ -||-..|--=+.+++..+++++-+++-+.+. ...-|-.++..|.+.
T Consensus 689 dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~ 757 (829)
T KOG2280|consen 689 DTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQ 757 (829)
T ss_pred HHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhc
Confidence 57788889999999999988874 5899999999999999999998877666554 256678899999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 025612 177 GMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221 (250)
Q Consensus 177 g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~ 221 (250)
|+.++|.+++-+.... . -...+|.+.|++.+|.++-
T Consensus 758 ~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 758 GNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred ccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHH
Confidence 9999999998765432 1 6788999999998887654
No 238
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=88.75 E-value=7.6 Score=28.44 Aligned_cols=54 Identities=9% Similarity=0.048 Sum_probs=24.7
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 025612 103 RRQNELDLALKVFNFVRKEVWYKP-DLSLYSDMILMLGKNKQIAMAEELFCELKK 156 (250)
Q Consensus 103 ~~~~~~~~a~~~~~~m~~~~g~~~-~~~~y~~li~~~~~~~~~~~A~~~~~~m~~ 156 (250)
.+.|++++|.+.|+.+..+.-..+ ....-=.|+.+|-+.+++++|...+++..+
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345555555555555532211111 122233444555555555555555555444
No 239
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.75 E-value=7.7 Score=31.31 Aligned_cols=149 Identities=14% Similarity=0.092 Sum_probs=93.5
Q ss_pred hcCChhHHHHHHHHHHH---hcCcccHH--HHHHH--HHHcCCHHHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHc
Q 025612 72 LAKSSSKLEEGFQSRIC---RLLKADLL--DTLTE--LRRQNELDLALKVFNFVRK----EVWYKPDLSLYSDMILMLGK 140 (250)
Q Consensus 72 ~~~~~~~a~~l~~~m~~---~~~~~~~~--~ll~~--~~~~~~~~~a~~~~~~m~~----~~g~~~~~~~y~~li~~~~~ 140 (250)
....+.+|..++++... ..-.|+.. +|=.+ ...+-++++|.++|.+-.. +.....-...|..+-+.|++
T Consensus 83 e~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr 162 (308)
T KOG1585|consen 83 ELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR 162 (308)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh
Confidence 44777788888887642 12234443 22221 2356788999999987431 11112234567788888889
Q ss_pred CCCHHHHHHHHHHHHhCC----CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcC
Q 025612 141 NKQIAMAEELFCELKKEG----LDPDT-RVYTEMIGVYLQVGMIDKAMETYETMKASG---CTPHKLTFTILIRNLENAG 212 (250)
Q Consensus 141 ~~~~~~A~~~~~~m~~~g----~~p~~-~ty~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~ty~~li~~~~~~g 212 (250)
..++++|-..|.+-.... -.++. ..|-+.|-.|....++..|...++.--+.+ -.-+..+...||.+|- .|
T Consensus 163 l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~g 241 (308)
T KOG1585|consen 163 LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EG 241 (308)
T ss_pred hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cC
Confidence 899888776665432211 11222 335666667777889999999999855442 2336688888888884 57
Q ss_pred CHHHHHHHH
Q 025612 213 EEELVAAVR 221 (250)
Q Consensus 213 ~~~~a~~~~ 221 (250)
+.+++.+++
T Consensus 242 D~E~~~kvl 250 (308)
T KOG1585|consen 242 DIEEIKKVL 250 (308)
T ss_pred CHHHHHHHH
Confidence 888877765
No 240
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.72 E-value=5.7 Score=26.99 Aligned_cols=62 Identities=18% Similarity=0.208 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 025612 143 QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS-GCTPHKLTFTILIR 206 (250)
Q Consensus 143 ~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~ty~~li~ 206 (250)
+.-++.+-++.+....+.|+....++-+++|-+.+++.-|.++|+-.+.. |. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 45566667777777777777777777777777777777777777766532 32 3345555543
No 241
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=88.52 E-value=7.6 Score=28.18 Aligned_cols=90 Identities=19% Similarity=0.154 Sum_probs=67.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHH---HHHHhc
Q 025612 101 ELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE-GLDPDTRVYTEMI---GVYLQV 176 (250)
Q Consensus 101 ~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~ty~~li---~~~~~~ 176 (250)
+++..|+++.|++.|.+... -.+.....||.--.+|--.|+.++|.+=+++..+- |-+ +.....+.+ .-|-..
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 56788999999999998753 23446889999999999999999999999887664 433 333333332 345567
Q ss_pred CChHHHHHHHHHHHHCC
Q 025612 177 GMIDKAMETYETMKASG 193 (250)
Q Consensus 177 g~~~~a~~~~~~m~~~g 193 (250)
|+-+.|..=|+.--+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 89999998888877766
No 242
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.97 E-value=0.099 Score=38.16 Aligned_cols=80 Identities=14% Similarity=0.068 Sum_probs=44.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcC--cccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLL--KADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ 143 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~--~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~ 143 (250)
++.+.+.+.+..+..+++.+...+. .+... .++..|++.+..++..+++... .+ .-...+++.|-+.|.
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~---~~-----yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS---NN-----YDLDKALRLCEKHGL 85 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS---SS-----S-CTHHHHHHHTTTS
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc---cc-----cCHHHHHHHHHhcch
Confidence 5556666666666666666665432 23333 4666666666656555555511 11 223456666666666
Q ss_pred HHHHHHHHHHH
Q 025612 144 IAMAEELFCEL 154 (250)
Q Consensus 144 ~~~A~~~~~~m 154 (250)
+++|.-++..+
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666665554
No 243
>PLN03025 replication factor C subunit; Provisional
Probab=87.63 E-value=16 Score=30.71 Aligned_cols=95 Identities=13% Similarity=0.136 Sum_probs=60.9
Q ss_pred HHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-C-----------CCCCHHHHHHHHHHHHhc
Q 025612 145 AMAEELFCEL-KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS-G-----------CTPHKLTFTILIRNLENA 211 (250)
Q Consensus 145 ~~A~~~~~~m-~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~-g-----------~~p~~~ty~~li~~~~~~ 211 (250)
++....+... ...|+..+......++..+ .|++..+...++..... + -.|.......++++.. .
T Consensus 161 ~~l~~~L~~i~~~egi~i~~~~l~~i~~~~--~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~~-~ 237 (319)
T PLN03025 161 QEILGRLMKVVEAEKVPYVPEGLEAIIFTA--DGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNCL-K 237 (319)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHHH-c
Confidence 4445555544 3447777777777776543 47888887777643321 1 1233344455555554 4
Q ss_pred CCHHHHHHHHHHHHhccCCchHHHHHHHHhh
Q 025612 212 GEEELVAAVRRDCIQYVEFPERFLEEVYQKH 242 (250)
Q Consensus 212 g~~~~a~~~~~~m~~~g~~pd~~~~~~~~~~ 242 (250)
++++.|...+.+|...|+.|..++..+....
T Consensus 238 ~~~~~a~~~l~~ll~~g~~~~~Il~~l~~~~ 268 (319)
T PLN03025 238 GKFDDACDGLKQLYDLGYSPTDIITTLFRVV 268 (319)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7899999999999888999988888775443
No 244
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=87.32 E-value=11 Score=36.49 Aligned_cols=124 Identities=11% Similarity=0.012 Sum_probs=85.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HH
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKP-DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIG--VY 173 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~-~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~--~~ 173 (250)
.|=.-|....+...|.+.|+...+ +.+ +...+-...+.|++..+++.|..+.-.-.+. -+.-...+|.+-. .|
T Consensus 497 ~LG~iYrd~~Dm~RA~kCf~KAFe---LDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk-a~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 497 FLGQIYRDSDDMKRAKKCFDKAFE---LDATDAEAAAASADTYAEESTWEEAFEICLRAAQK-APAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc---CCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh-chHHHHHhhhhhccccc
Confidence 455555566677778888887653 333 4666778889999999999998883222221 1112233444433 45
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 174 LQVGMIDKAMETYETMKASGCTP-HKLTFTILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 174 ~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
.+.++..++..-|+.-... .| |...|..+..+|.+.|++..|.++|.....
T Consensus 573 Lea~n~h~aV~~fQsALR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred cCccchhhHHHHHHHHhcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 5678888888888776663 34 778899999999999999999999976543
No 245
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=87.16 E-value=17 Score=30.62 Aligned_cols=152 Identities=11% Similarity=0.035 Sum_probs=88.8
Q ss_pred CChhHHHHHHHHHHHhcCcccHH------------HHHHHHHHcCC--HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 025612 74 KSSSKLEEGFQSRICRLLKADLL------------DTLTELRRQNE--LDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139 (250)
Q Consensus 74 ~~~~~a~~l~~~m~~~~~~~~~~------------~ll~~~~~~~~--~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~ 139 (250)
++......++..+.+.+..|=.. .++....+.++ +++-.+..++..+..|-.--...+-..-..||
T Consensus 36 ~~~~~~e~l~~~Ird~~Map~Ye~lce~~~i~~D~~~l~~m~~~neeki~eld~~iedaeenlGE~ev~ea~~~kaeYyc 115 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAPLYEYLCESLVIKLDQDLLNSMKKANEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYC 115 (393)
T ss_pred cCHHHHHHHHHHHHhcccchHHHHHHhhcceeccHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 35555566666666666655322 35666655543 34444444555432333333455566667788
Q ss_pred cCCCHHHHHHHHHHHHh----CCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHh
Q 025612 140 KNKQIAMAEELFCELKK----EGLDPDTRVYTEMIGVYL-QVGMIDKAMETYETMKASGCTPHK----LTFTILIRNLEN 210 (250)
Q Consensus 140 ~~~~~~~A~~~~~~m~~----~g~~p~~~ty~~li~~~~-~~g~~~~a~~~~~~m~~~g~~p~~----~ty~~li~~~~~ 210 (250)
+.|+-+.|++.+....+ -|.+.|.+.+-+=+.-+. ...-+.+-.+.-+.+.+.|...+. .+|..+...-.|
T Consensus 116 qigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR 195 (393)
T KOG0687|consen 116 QIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVR 195 (393)
T ss_pred HhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHH
Confidence 99998888887766543 477777777665554332 333344555555666666654433 566666655555
Q ss_pred cCCHHHHHHHHHHHHhc
Q 025612 211 AGEEELVAAVRRDCIQY 227 (250)
Q Consensus 211 ~g~~~~a~~~~~~m~~~ 227 (250)
++.+|..+|-+...-
T Consensus 196 --~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 196 --NFKEAADLFLDSVST 210 (393)
T ss_pred --hHHHHHHHHHHHccc
Confidence 788888887766543
No 246
>PRK15331 chaperone protein SicA; Provisional
Probab=87.11 E-value=11 Score=28.37 Aligned_cols=87 Identities=9% Similarity=-0.114 Sum_probs=59.8
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 025612 139 GKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218 (250)
Q Consensus 139 ~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~ 218 (250)
-..|++++|..+|.-+..-+. -|..-|..|-.+|-..+.+++|...|...-..+. -|+..+-..-.+|...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 357888999998888765321 2344456666677778889999888877544332 23344445567778888888888
Q ss_pred HHHHHHHhc
Q 025612 219 AVRRDCIQY 227 (250)
Q Consensus 219 ~~~~~m~~~ 227 (250)
..|....+.
T Consensus 126 ~~f~~a~~~ 134 (165)
T PRK15331 126 QCFELVNER 134 (165)
T ss_pred HHHHHHHhC
Confidence 888887763
No 247
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.04 E-value=16 Score=30.28 Aligned_cols=161 Identities=16% Similarity=0.143 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHhc-CcccHHHHHHHHHHcCCHHHHHHHHHHH----HH---------------------hCCCCCCHHHH
Q 025612 78 KLEEGFQSRICRL-LKADLLDTLTELRRQNELDLALKVFNFV----RK---------------------EVWYKPDLSLY 131 (250)
Q Consensus 78 ~a~~l~~~m~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m----~~---------------------~~g~~~~~~~y 131 (250)
+|+++|.-+.... -..+...++.++....+..+|...++.. ++ -.+...|..-|
T Consensus 151 KA~ELFayLv~hkgk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~Dv~e~ 230 (361)
T COG3947 151 KALELFAYLVEHKGKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYDVQEY 230 (361)
T ss_pred HHHHHHHHHHHhcCCcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccccHHHH
Confidence 5677777665433 3334446777777777766666655542 11 12345566667
Q ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHhCCCCCC-----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 025612 132 SDMILMLGKNK-QIAMAEELFCELKKEGLDPD-----------------TRVYTEMIGVYLQVGMIDKAMETYETMKASG 193 (250)
Q Consensus 132 ~~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~-----------------~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g 193 (250)
-+.++-.-+.. .++++.++....+. +.-|+ ..+++..-+.|..+|.+.+|.++.+......
T Consensus 231 es~~rqi~~inltide~kelv~~ykg-dyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltld 309 (361)
T COG3947 231 ESLARQIEAINLTIDELKELVGQYKG-DYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLD 309 (361)
T ss_pred HHHhhhhhccccCHHHHHHHHHHhcC-CcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Confidence 77766655433 35666666655432 23232 1234555678889999999999999887753
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----hccCCchHHHHHHHH
Q 025612 194 CTPHKLTFTILIRNLENAGEEELVAAVRRDCI-----QYVEFPERFLEEVYQ 240 (250)
Q Consensus 194 ~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~-----~~g~~pd~~~~~~~~ 240 (250)
+.+...|..|++.++..|+--.|.+-+..+. +.|+..|.-+++.+.
T Consensus 310 -pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsieewy~ 360 (361)
T COG3947 310 -PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEEWYK 360 (361)
T ss_pred -hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHHHhh
Confidence 4577889999999999999666666555553 458888887777653
No 248
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.80 E-value=8.1 Score=26.56 Aligned_cols=47 Identities=15% Similarity=0.137 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 025612 146 MAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS 192 (250)
Q Consensus 146 ~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 192 (250)
+..+-++.+....+.|+.....+.+++|-+.+++.-|.++|+-.+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 55666666666666777777777777777777777777777666543
No 249
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=86.71 E-value=2.8 Score=23.54 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=11.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 025612 167 TEMIGVYLQVGMIDKAMETYETMKA 191 (250)
Q Consensus 167 ~~li~~~~~~g~~~~a~~~~~~m~~ 191 (250)
..+-..|.+.|++++|.++|++..+
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 250
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=86.54 E-value=4.7 Score=31.07 Aligned_cols=52 Identities=10% Similarity=-0.088 Sum_probs=26.1
Q ss_pred hcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 175 QVGMIDKAMETYETMKAS-GCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 175 ~~g~~~~a~~~~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
..++.+......+...+. ...|+..+|..++.++...|+.++|.++.+++..
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444433333322 3455666666666666666666666555555443
No 251
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.49 E-value=16 Score=29.72 Aligned_cols=99 Identities=16% Similarity=0.133 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCH-HHHHH
Q 025612 128 LSLYSDMILMLGKNKQIAMAEELFCELKKEG--LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS-GCTPHK-LTFTI 203 (250)
Q Consensus 128 ~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g--~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~-~ty~~ 203 (250)
...|+.-+..|. .|++..|...|....+.. =.-..-.+=.|-.++...|+.++|..+|..+.+. +-.|-. .++--
T Consensus 142 ~~~Y~~A~~~~k-sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 142 TKLYNAALDLYK-SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred hHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 346888887765 566999999999987752 1112233455889999999999999999998765 433433 66777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 025612 204 LIRNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 204 li~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
|-....+.|+.+.|..+|++..+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 788888999999999999998754
No 252
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=86.18 E-value=16 Score=29.49 Aligned_cols=165 Identities=15% Similarity=0.112 Sum_probs=112.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhc-CcccHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 025612 62 EAIQAVHAMKLAKSSSKLEEGFQSRICRL-LKADLL----DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMIL 136 (250)
Q Consensus 62 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~-~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~ 136 (250)
+.+.-...-.+.|++++|.+.|+.+.+.- ..|-.. .++.++.+.+++++|....++..+..+-.||+ -|---|.
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Ylk 114 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLK 114 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHH
Confidence 44444555567899999999999997543 222222 47788889999999999999987766666663 4544555
Q ss_pred HHHc-------CCCHHHHHHHHHHHHh-------CCCCCCHHH-----------H-HHHHHHHHhcCChHHHHHHHHHHH
Q 025612 137 MLGK-------NKQIAMAEELFCELKK-------EGLDPDTRV-----------Y-TEMIGVYLQVGMIDKAMETYETMK 190 (250)
Q Consensus 137 ~~~~-------~~~~~~A~~~~~~m~~-------~g~~p~~~t-----------y-~~li~~~~~~g~~~~a~~~~~~m~ 190 (250)
+++. .++...+..-|+.|.+ +...||... + -.+-+-|.+.|.+..|..-+++|.
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~ 194 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVL 194 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 5442 2445555555555543 233444433 2 233467889999999999999999
Q ss_pred HC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 025612 191 AS--GCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 191 ~~--g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
+. ...-.....-.+..+|-..|-.++|.+.-+-+..+
T Consensus 195 e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 195 ENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred hccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 87 11222345677889999999999998887766544
No 253
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=86.13 E-value=24 Score=31.46 Aligned_cols=72 Identities=14% Similarity=0.195 Sum_probs=51.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHH
Q 025612 133 DMILMLGKNKQIAMAEELFCELKKE-GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK--LTFTILI 205 (250)
Q Consensus 133 ~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~ty~~li 205 (250)
.|-.++-+.|+.++|.+.|.+|.+. ...-+....-.||.++...+.+.++..++.+-.+.. .|.. ..|+..+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-lpkSAti~YTaAL 338 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-LPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-CCchHHHHHHHHH
Confidence 3445555789999999999998653 222244577889999999999999999998875433 3444 3466544
No 254
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.13 E-value=2.5 Score=21.97 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 025612 165 VYTEMIGVYLQVGMIDKAMETYETMK 190 (250)
Q Consensus 165 ty~~li~~~~~~g~~~~a~~~~~~m~ 190 (250)
+|..+-..|...|++++|+..|++..
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 34444444455555555555554443
No 255
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=85.65 E-value=2 Score=24.15 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 025612 199 LTFTILIRNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 199 ~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
.++..+-.+|.+.|++++|.++++...+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46778899999999999999999999875
No 256
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=85.14 E-value=18 Score=29.11 Aligned_cols=101 Identities=13% Similarity=0.193 Sum_probs=63.8
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-C-----------CCCCHHHHHHH
Q 025612 137 MLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS-G-----------CTPHKLTFTIL 204 (250)
Q Consensus 137 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~-g-----------~~p~~~ty~~l 204 (250)
-|.+..+-.--.++.+-.+..+++-+..-..++| +...|+..+|+.-++.-... | -.|.+.....+
T Consensus 168 Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~m 245 (333)
T KOG0991|consen 168 RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKM 245 (333)
T ss_pred hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHH
Confidence 3444444444444554444456665555555554 33567777777766654322 2 15777777778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCchHHHHHHHH
Q 025612 205 IRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVYQ 240 (250)
Q Consensus 205 i~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~~~ 240 (250)
+..|.+ +++++|.++++++-+.|..|..++..+.+
T Consensus 246 l~~~~~-~~~~~A~~il~~lw~lgysp~Dii~~~FR 280 (333)
T KOG0991|consen 246 LQACLK-RNIDEALKILAELWKLGYSPEDIITTLFR 280 (333)
T ss_pred HHHHHh-ccHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 877765 47888888888888888888877666544
No 257
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.77 E-value=32 Score=31.58 Aligned_cols=105 Identities=11% Similarity=0.065 Sum_probs=76.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 177 (250)
-.....+.|+++.|.++..+.. +..-|..|=++..+.+++..|.++|..-.. |..|+-.+...|
T Consensus 643 rFelal~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g 706 (794)
T KOG0276|consen 643 RFELALKLGRLDIAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSG 706 (794)
T ss_pred hhhhhhhcCcHHHHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcC
Confidence 4445567788888888776552 567799999999999999999999887554 567777778888
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 025612 178 MIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDC 224 (250)
Q Consensus 178 ~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m 224 (250)
+.+....+-..-++.|. .|.-.-+|...|+++++.+++-.-
T Consensus 707 ~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 707 NAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 87766666666666663 233344666778888887776543
No 258
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=84.72 E-value=4.8 Score=23.33 Aligned_cols=31 Identities=10% Similarity=0.236 Sum_probs=14.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 025612 175 QVGMIDKAMETYETMKASGCTPHKLTFTILI 205 (250)
Q Consensus 175 ~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li 205 (250)
+.|.+.++..++++|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444444555555555555544444444443
No 259
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=84.58 E-value=12 Score=35.57 Aligned_cols=48 Identities=21% Similarity=0.359 Sum_probs=37.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 025612 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKK 156 (250)
Q Consensus 102 ~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~ 156 (250)
|...|+.|.|.+-.+.++ +...|..+-+.|.+..+++-|.-++-.|..
T Consensus 738 yvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~ 785 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKN 785 (1416)
T ss_pred EEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhh
Confidence 446688888888777773 467899999999998888888887777754
No 260
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.51 E-value=21 Score=29.28 Aligned_cols=127 Identities=15% Similarity=0.035 Sum_probs=89.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-----H
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIG-----V 172 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~-----~ 172 (250)
++..+.-.+.+.--...+++.++ ..-+.++..-..|.+.-...|+.+.|...|+..++..-+.|..+++.++. .
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~-~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIK-YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHH-hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 44444455777778888888876 55566788888888888899999999999998877666677777777663 2
Q ss_pred HHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 025612 173 YLQVGMIDKAMETYETMKAS-GCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 173 ~~~~g~~~~a~~~~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
|.-.+++.+|...|++.... .-.|-..--.+|+..|. |+...|.+....|++.
T Consensus 262 ~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYl--g~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 262 HLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYL--GKLKDALKQLEAMVQQ 315 (366)
T ss_pred eecccchHHHHHHHhhccccCCCchhhhchHHHHHHHH--HHHHHHHHHHHHHhcc
Confidence 33467788888888877653 21222222234555554 5888899988888765
No 261
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=84.23 E-value=6.9 Score=25.75 Aligned_cols=29 Identities=3% Similarity=-0.120 Sum_probs=11.9
Q ss_pred CHHHHHHHHHHHHhccCCchHHHHHHHHh
Q 025612 213 EEELVAAVRRDCIQYVEFPERFLEEVYQK 241 (250)
Q Consensus 213 ~~~~a~~~~~~m~~~g~~pd~~~~~~~~~ 241 (250)
+++++...+.++...|+.++.++..+...
T Consensus 19 ~~~~~~~~~~~l~~~G~s~~~Il~~l~~~ 47 (89)
T PF08542_consen 19 DFKEARKKLYELLVEGYSASDILKQLHEV 47 (89)
T ss_dssp CHHHHHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44444444444444444444444444433
No 262
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=84.19 E-value=4.8 Score=23.36 Aligned_cols=33 Identities=15% Similarity=0.317 Sum_probs=19.5
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 025612 139 GKNKQIAMAEELFCELKKEGLDPDTRVYTEMIG 171 (250)
Q Consensus 139 ~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~ 171 (250)
.+.|-++++..++++|.+.|+..+...|+.++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 344555566666666666666666666655553
No 263
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=83.79 E-value=6.6 Score=31.66 Aligned_cols=59 Identities=17% Similarity=0.150 Sum_probs=43.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 025612 97 DTLTELRRQNELDLALKVFNFVR----KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELK 155 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~----~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~ 155 (250)
.+-..|.+.|++++|.++|+.+. ++.+..+...+...+..++.+.|+.+....+--+|.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 46777888888888888888763 234556667777778888888888887776655543
No 264
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.78 E-value=17 Score=27.77 Aligned_cols=128 Identities=12% Similarity=0.052 Sum_probs=86.6
Q ss_pred HHhcCChhHHHHHHHHHHHhcCcc--cHH--HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHH--HHcCC
Q 025612 70 MKLAKSSSKLEEGFQSRICRLLKA--DLL--DTLTELRRQNELDLALKVFNFVRKEVWYKPDLS-LYSDMILM--LGKNK 142 (250)
Q Consensus 70 ~~~~~~~~~a~~l~~~m~~~~~~~--~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~-~y~~li~~--~~~~~ 142 (250)
+++.+..++|+.-|.++.+-|... ... ..-......|+...|...|+++-+ ..-.|-+. -.-.|=.+ +..+|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~-dt~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA-DTSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc-cCCCcchhhHHHHHHHHHHHhccc
Confidence 567788899999999998776542 222 344456678899999999999865 33334333 22223233 35678
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 025612 143 QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK 198 (250)
Q Consensus 143 ~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 198 (250)
.++......+-+...|-+.-...-.+|--+-.+.|++.+|...|..+...--.|-.
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprn 202 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRN 202 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHH
Confidence 88888877777766555555555667766777889999999999888765444533
No 265
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=83.49 E-value=18 Score=30.02 Aligned_cols=109 Identities=12% Similarity=0.062 Sum_probs=64.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 177 (250)
++...-+..++....+.+..+. ....-..-|..+...|++.+|.++..+..+. ...|+.+=..-.-..
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~-------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-----l~~l~~~~c~~~L~~ 171 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK-------TVQQTQSRLQELLEEGDYPGALDLIEECQQL-----LEELKGYSCVRHLSS 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----HHhcccchHHHHHhH
Confidence 4555555555666666666663 3556677788888999999999998887652 111111100000112
Q ss_pred ChHHHHHHHHHHHHC---C--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 025612 178 MIDKAMETYETMKAS---G--CTPHKLTFTILIRNLENAGEEELVA 218 (250)
Q Consensus 178 ~~~~a~~~~~~m~~~---g--~~p~~~ty~~li~~~~~~g~~~~a~ 218 (250)
++++.....+++.+. + ...|+..|..++.||.-.|+...+.
T Consensus 172 ~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 172 QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHH
Confidence 344444444443322 1 1578888999999998888766544
No 266
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.36 E-value=17 Score=27.25 Aligned_cols=110 Identities=14% Similarity=0.173 Sum_probs=51.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhcCcccHH--HHHHH--HHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 025612 65 QAVHAMKLAKSSSKLEEGFQSRICRLLKADLL--DTLTE--LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK 140 (250)
Q Consensus 65 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~--~ll~~--~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~ 140 (250)
.++..-...++.+.+..++..+. .+.|... .+..+ +.+.|++.+|..+|+++.++ .|.......|+..|..
T Consensus 15 e~~~~al~~~~~~D~e~lL~ALr--vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~---~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 15 EVLSVALRLGDPDDAEALLDALR--VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER---APGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHccCChHHHHHHHHHHH--HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc---CCCChHHHHHHHHHHH
Confidence 34444445566667777776664 3334333 23333 34667777777777776432 2333333444444443
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 025612 141 NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKA 182 (250)
Q Consensus 141 ~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a 182 (250)
...-..=...-++..+.+-.|+.. .+++.+....+...|
T Consensus 90 ~~~D~~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a 128 (160)
T PF09613_consen 90 ALGDPSWRRYADEVLESGADPDAR---ALVRALLARADLEPA 128 (160)
T ss_pred HcCChHHHHHHHHHHhcCCChHHH---HHHHHHHHhccccch
Confidence 332222222233444444333332 334444444444333
No 267
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.73 E-value=17 Score=26.89 Aligned_cols=90 Identities=12% Similarity=0.052 Sum_probs=45.4
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 025612 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183 (250)
Q Consensus 104 ~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~ 183 (250)
..++++++..+++.|+--+--.+...++...| +...|++++|.++|++..+.+. ...|..-+.++|-...-|-.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~---~~p~~kAL~A~CL~al~Dp~W 96 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAG---APPYGKALLALCLNAKGDAEW 96 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCC---CchHHHHHHHHHHHhcCChHH
Confidence 46677777777776643111122233333332 4566777777777777766531 224444444555444444444
Q ss_pred HHH-HHHHHCCCCCCH
Q 025612 184 ETY-ETMKASGCTPHK 198 (250)
Q Consensus 184 ~~~-~~m~~~g~~p~~ 198 (250)
+.+ +++...|-.|+.
T Consensus 97 r~~A~~~le~~~~~~a 112 (153)
T TIGR02561 97 HVHADEVLARDADADA 112 (153)
T ss_pred HHHHHHHHHhCCCHhH
Confidence 444 334444433333
No 268
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=82.70 E-value=44 Score=32.18 Aligned_cols=85 Identities=12% Similarity=0.112 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHH---------------HHHHHH
Q 025612 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVY---------------TEMIGV 172 (250)
Q Consensus 108 ~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty---------------~~li~~ 172 (250)
.+...+++.++.+..|+..+......++.... |++..++.+++++... ...+.+|+ ..++.+
T Consensus 181 ~~~l~~~L~~il~~EGv~id~eal~lLa~~sg--GdlR~Al~eLEKLia~-~~~~~IT~e~V~allg~~~~~~I~~lidA 257 (824)
T PRK07764 181 PEVMRGYLERICAQEGVPVEPGVLPLVIRAGG--GSVRDSLSVLDQLLAG-AGPEGVTYERAVALLGVTDSALIDEAVDA 257 (824)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHHhh-cCCCCCCHHHHHHHhcCCCHHHHHHHHHH
Confidence 34455555555455677777777666655553 7788888888776531 11222222 234444
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC
Q 025612 173 YLQVGMIDKAMETYETMKASGCTP 196 (250)
Q Consensus 173 ~~~~g~~~~a~~~~~~m~~~g~~p 196 (250)
.. .|+...++.+++++.+.|..|
T Consensus 258 L~-~~D~a~al~~l~~Li~~G~dp 280 (824)
T PRK07764 258 LA-AGDGAALFGTVDRVIEAGHDP 280 (824)
T ss_pred HH-cCCHHHHHHHHHHHHHcCCCH
Confidence 33 467777888888887777653
No 269
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=82.37 E-value=44 Score=31.42 Aligned_cols=123 Identities=19% Similarity=0.116 Sum_probs=88.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 025612 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD-TRVYTEMIGVYLQVG 177 (250)
Q Consensus 99 l~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g 177 (250)
-..+.+.+..++|...+.+..+ ........|.-.=..+...|.+++|...|..-.. +.|+ ....+++-..+.+.|
T Consensus 657 a~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G 732 (799)
T KOG4162|consen 657 ADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELG 732 (799)
T ss_pred HHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhC
Confidence 3445567777788777777643 2334455566555666677888888888877655 3454 456777888888888
Q ss_pred ChHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 178 MIDKAME--TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 178 ~~~~a~~--~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
+-.-|.. +..++.+-+ .-+...|-.+=..+-..|+.++|.+.|+...+
T Consensus 733 ~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 733 SPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred CcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 8777777 888888754 23678888898999999999999999887654
No 270
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=82.33 E-value=9.6 Score=29.31 Aligned_cols=60 Identities=15% Similarity=0.126 Sum_probs=41.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 025612 133 DMILMLGKNKQIAMAEELFCELKKE-GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS 192 (250)
Q Consensus 133 ~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 192 (250)
..+.......+.+......+..++. ...|+..+|..++..+...|+.++|.+..+++...
T Consensus 113 ~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 113 ALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3333333555655555555554442 56789999999999999999999998888888764
No 271
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.19 E-value=22 Score=27.75 Aligned_cols=79 Identities=9% Similarity=-0.039 Sum_probs=60.6
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHH
Q 025612 139 GKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS---GCTPHKLTFTILIRNLENAGEEE 215 (250)
Q Consensus 139 ~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~ty~~li~~~~~~g~~~ 215 (250)
.+.|+ +.|.+.|-.+...+.--|+..--+| .+|....+.+++..++-...+. +-.+|+..+..|...|-+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aL-AtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYAL-ATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHH-HHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 44455 7888899999888766555544444 4555568899999999887653 44789999999999999999999
Q ss_pred HHHH
Q 025612 216 LVAA 219 (250)
Q Consensus 216 ~a~~ 219 (250)
.|.-
T Consensus 196 ~AYi 199 (203)
T PF11207_consen 196 QAYI 199 (203)
T ss_pred hhhh
Confidence 8863
No 272
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.85 E-value=14 Score=25.39 Aligned_cols=71 Identities=10% Similarity=0.073 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-ccCCchHHHH
Q 025612 166 YTEMIGVYLQVGMID--KAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ-YVEFPERFLE 236 (250)
Q Consensus 166 y~~li~~~~~~g~~~--~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~-~g~~pd~~~~ 236 (250)
|++=-..|....+.| +..+-++.+....+.|++....+.++||-|.+++..|.++|...+. .|-.-+.+-|
T Consensus 11 F~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~ 84 (108)
T PF02284_consen 11 FDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPY 84 (108)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHH
T ss_pred HHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHH
Confidence 333334444444443 6667777777888999999999999999999999999999999874 4544433333
No 273
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=81.69 E-value=47 Score=31.26 Aligned_cols=94 Identities=12% Similarity=0.080 Sum_probs=60.8
Q ss_pred HHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---C----------CCCHHHHHHHHHHHHh
Q 025612 145 AMAEELFCEL-KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG---C----------TPHKLTFTILIRNLEN 210 (250)
Q Consensus 145 ~~A~~~~~~m-~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g---~----------~p~~~ty~~li~~~~~ 210 (250)
++....+... ...|+..+......|+... .|++..+..++++....| + ..+...+..|++++.+
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~ 258 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN 258 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc
Confidence 4444455443 3347777777776666544 478888888887654422 1 1233345556666665
Q ss_pred cCCHHHHHHHHHHHHhccCCchHHHHHHHHh
Q 025612 211 AGEEELVAAVRRDCIQYVEFPERFLEEVYQK 241 (250)
Q Consensus 211 ~g~~~~a~~~~~~m~~~g~~pd~~~~~~~~~ 241 (250)
++...+.+++++|...|+.+..++..+...
T Consensus 259 -~d~~~al~~l~~L~~~G~d~~~~l~~L~~~ 288 (709)
T PRK08691 259 -QDGAALLAKAQEMAACAVGFDNALGELAIL 288 (709)
T ss_pred -CCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 788889999999999999888777666443
No 274
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.60 E-value=32 Score=29.28 Aligned_cols=147 Identities=11% Similarity=-0.067 Sum_probs=85.4
Q ss_pred CChhHHHHHHHHHHHhcCcccHHH---HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHcCCCHHH
Q 025612 74 KSSSKLEEGFQSRICRLLKADLLD---TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSD----MILMLGKNKQIAM 146 (250)
Q Consensus 74 ~~~~~a~~l~~~m~~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~----li~~~~~~~~~~~ 146 (250)
|+..+|-..|+++.+ ..+.|..+ .-++|.-+|+.+.-...++.+.- ...||...|.- .--++..+|-+++
T Consensus 117 g~~h~a~~~wdklL~-d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLD-DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccHHHHHHHHHHH-hCchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 444455555555543 23333332 45677778888777777777752 23455433332 2233446788888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 025612 147 AEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS---GCTPHKLTFTILIRNLENAGEEELVAAVRRD 223 (250)
Q Consensus 147 A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~ 223 (250)
|++.-++-.+-+ +-|.-.-.++-..+-..|+..++.+++.+=... +--.-.+-|-..--.+...+.++.|.++|+.
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 888777655432 234445555555666678888888887654322 2222223344444456667899999999876
Q ss_pred H
Q 025612 224 C 224 (250)
Q Consensus 224 m 224 (250)
-
T Consensus 273 e 273 (491)
T KOG2610|consen 273 E 273 (491)
T ss_pred H
Confidence 3
No 275
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=81.34 E-value=30 Score=31.00 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=79.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCC
Q 025612 100 TELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT-RVYTEMIGVYLQVGM 178 (250)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~ty~~li~~~~~~g~ 178 (250)
++.+..|+++.|...|-+... -. ++|...|..-..+|++.|++++|.+=-.+-. .+.|+- .-|+-.-.+..-.|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~-l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~--~l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIM-LS-PTNHVLYSNRSAAYASLGSYEKALKDATKTR--RLNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HhhcccccHHHHHHHHHHHHc-cC-CCccchhcchHHHHHHHhhHHHHHHHHHHHH--hcCCchhhHHHHhHHHHHhccc
Confidence 455678999999999998763 22 3478889999999999999999876444433 467774 568888888888999
Q ss_pred hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 025612 179 IDKAMETYETMKASGCTP-HKLTFTILIRNL 208 (250)
Q Consensus 179 ~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~ 208 (250)
+++|+.-|.+=.+. .| |...++.+.+++
T Consensus 86 ~~eA~~ay~~GL~~--d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 86 YEEAILAYSEGLEK--DPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHHhhc--CCchHHHHHhHHHhh
Confidence 99999999886663 35 456677777777
No 276
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=80.73 E-value=13 Score=28.49 Aligned_cols=22 Identities=14% Similarity=0.090 Sum_probs=13.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 025612 98 TLTELRRQNELDLALKVFNFVR 119 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~ 119 (250)
.+-.|.++|.+++|.++++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHh
Confidence 4455666666666666666654
No 277
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=80.69 E-value=30 Score=28.37 Aligned_cols=157 Identities=10% Similarity=-0.012 Sum_probs=91.4
Q ss_pred HHHHHHhcCChh---HHHHHHHHHHH-hcCcccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-
Q 025612 66 AVHAMKLAKSSS---KLEEGFQSRIC-RLLKADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG- 139 (250)
Q Consensus 66 ll~~~~~~~~~~---~a~~l~~~m~~-~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~- 139 (250)
++.++...+..+ +|..+.+.+.+ .+-+|.+. --++.+.+.++.+.+.+++..|.... .-....+..+++.+-
T Consensus 90 La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~--~~~e~~~~~~l~~i~~ 167 (278)
T PF08631_consen 90 LANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV--DHSESNFDSILHHIKQ 167 (278)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc--ccccchHHHHHHHHHH
Confidence 356666666655 56666666654 34445555 45666666899999999999998643 223455666666652
Q ss_pred -cCCCHHHHHHHHHHHHhCCCCCCHH-HHHH-HHHHH---HhcC------ChHHHHHHHHHHHHC-CCCCCHHHHHHHH-
Q 025612 140 -KNKQIAMAEELFCELKKEGLDPDTR-VYTE-MIGVY---LQVG------MIDKAMETYETMKAS-GCTPHKLTFTILI- 205 (250)
Q Consensus 140 -~~~~~~~A~~~~~~m~~~g~~p~~~-ty~~-li~~~---~~~g------~~~~a~~~~~~m~~~-g~~p~~~ty~~li- 205 (250)
.......|...++.+....+.|... .... ++... .+.+ .++.+.++++...+. +-..+..+-.++.
T Consensus 168 l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~ 247 (278)
T PF08631_consen 168 LAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHT 247 (278)
T ss_pred HHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 2233467777777776665666653 1111 11111 1111 255555666654333 4445555544443
Q ss_pred ------HHHHhcCCHHHHHHHHHHH
Q 025612 206 ------RNLENAGEEELVAAVRRDC 224 (250)
Q Consensus 206 ------~~~~~~g~~~~a~~~~~~m 224 (250)
..+.+.++++.|.++|+--
T Consensus 248 LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 248 LLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 3345678999999998753
No 278
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=80.61 E-value=13 Score=34.65 Aligned_cols=166 Identities=15% Similarity=0.133 Sum_probs=86.2
Q ss_pred ceeeeeccccCCCccccccCCCcHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHHHHHHHHHHcCCHHHHH-----
Q 025612 38 ALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLAL----- 112 (250)
Q Consensus 38 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~ll~~~~~~~~~~~a~----- 112 (250)
.++++|+.....+ ...+-+.+......-...-+--|++++|.+++-++-++.+.. ..+-+.|++-...
T Consensus 713 ~AFVrc~dY~Gik-~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDLAi------elr~klgDwfrV~qL~r~ 785 (1189)
T KOG2041|consen 713 HAFVRCGDYAGIK-LVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLAI------ELRKKLGDWFRVYQLIRN 785 (1189)
T ss_pred hhhhhhccccchh-HHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhhhH------HHHHhhhhHHHHHHHHHc
Confidence 4566777665332 222323222222322222233488999999888876554432 2222333333222
Q ss_pred -----------HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHH
Q 025612 113 -----------KVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE--------GLDPDTRVYTEMIGVY 173 (250)
Q Consensus 113 -----------~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~--------g~~p~~~ty~~li~~~ 173 (250)
+.|+.|-+. -.+...|-.-...|..+|+.+.-.+.+-.+..- .++-|....-.|-.++
T Consensus 786 g~~d~dD~~~e~A~r~ig~~---fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf 862 (1189)
T KOG2041|consen 786 GGSDDDDEGKEDAFRNIGET---FAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMF 862 (1189)
T ss_pred cCCCcchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHH
Confidence 233333210 123344666667777777766554443332221 2344556666777888
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 025612 174 LQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222 (250)
Q Consensus 174 ~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~ 222 (250)
.+.|.-++|.+.|-+--. |- .-+..|....++.+|.++-+
T Consensus 863 ~svGMC~qAV~a~Lr~s~----pk-----aAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 863 TSVGMCDQAVEAYLRRSL----PK-----AAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred HhhchHHHHHHHHHhccC----cH-----HHHHHHHHHHHHHHHHHHHH
Confidence 888888888877644322 22 33456666666666666543
No 279
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=80.15 E-value=7.8 Score=26.76 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=11.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 025612 97 DTLTELRRQNELDLALKVFNFV 118 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m 118 (250)
.+|..|...++.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3455555555555555555544
No 280
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=79.97 E-value=26 Score=27.18 Aligned_cols=129 Identities=14% Similarity=0.029 Sum_probs=75.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPD-LSLYSDMILMLGKNKQIAMAEELFCELKKE-GLDPDTRVYTEMIGVYLQ 175 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~~~y~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~ty~~li~~~~~ 175 (250)
.-..+...|++++|.+.|+.+.....-.|- ....-.+..++-+.|+++.|...|++.... .-.|. .-+.-.+.+.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~-~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK-ADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT-HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc-hhhHHHHHHHHH
Confidence 344567899999999999999754222221 344556778889999999999999998764 21222 222222222221
Q ss_pred -------------cCChHHHHHHHHHHHHCC----CCCCHHHH------------HHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 176 -------------VGMIDKAMETYETMKASG----CTPHKLTF------------TILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 176 -------------~g~~~~a~~~~~~m~~~g----~~p~~~ty------------~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
.+...+|...|+.+...- ..++.... -.+.+-|.+.|.+..|..-++.+.+
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 223456777777776531 11111111 1234567788888888888888776
Q ss_pred c
Q 025612 227 Y 227 (250)
Q Consensus 227 ~ 227 (250)
.
T Consensus 170 ~ 170 (203)
T PF13525_consen 170 N 170 (203)
T ss_dssp H
T ss_pred H
Confidence 5
No 281
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=78.93 E-value=10 Score=27.86 Aligned_cols=61 Identities=11% Similarity=-0.009 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCcccHH--HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 025612 81 EGFQSRICRLLKADLL--DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNK 142 (250)
Q Consensus 81 ~l~~~m~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~ 142 (250)
++...+.+.|++++.. .+++.+...++.-.|.++++.+.+ .+...+..|--.-++.+...|
T Consensus 7 ~~~~~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~-~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELRE-EGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHH-hCCCCCHhHHHHHHHHHHHCC
Confidence 4455566778766555 789999988888889999999975 565555555444445555444
No 282
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=78.85 E-value=49 Score=29.74 Aligned_cols=50 Identities=22% Similarity=0.316 Sum_probs=26.4
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 025612 138 LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYET 188 (250)
Q Consensus 138 ~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~ 188 (250)
+.+.|++..|++.|.++..+. +-|...|+.--.+|.+.|.+..|+.=-+.
T Consensus 368 ~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~ 417 (539)
T KOG0548|consen 368 AFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKK 417 (539)
T ss_pred HHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344555556666665555543 33445555555555555555555544333
No 283
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=78.62 E-value=4.8 Score=33.29 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 025612 166 YTEMIGVYLQVGMIDKAMETYETMKASGCT 195 (250)
Q Consensus 166 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 195 (250)
||.-|..-.+.||+++|+.+.++-++.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345555555555555555555555555554
No 284
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=78.32 E-value=5.3 Score=36.50 Aligned_cols=125 Identities=8% Similarity=0.042 Sum_probs=30.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 176 (250)
.++..|.+.|-.+.|.++...+..+ - ....-|..-|..+.++|+...+..+-+.+.+..+..+......+|......
T Consensus 410 k~l~iC~~~~L~~~a~~I~~~~~~~-~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i~~~ 486 (566)
T PF07575_consen 410 KLLEICAELGLEDVAREICKILGQR-L--LKEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDNIGSP 486 (566)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHH-H--HHHHHHHHHHHHHH-------------------------------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH-H--HHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHHhcch
Confidence 5899999999999999999887542 1 234568888888899999887777766665433333333333333322222
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCchHHHHH
Q 025612 177 GMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEE 237 (250)
Q Consensus 177 g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~ 237 (250)
. +....+.| ..+|.-+.+.+. .|++.+|.+.+-.+.+.++.|..|...
T Consensus 487 ~-----------~~~~~L~f-la~yreF~~~~~-~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~ 534 (566)
T PF07575_consen 487 M-----------LLSQRLSF-LAKYREFYELYD-EGDFREAASLLVSLLKSPIAPKSFWPL 534 (566)
T ss_dssp -------------------------------------------------------------
T ss_pred h-----------hhhhhhHH-HHHHHHHHHHHh-hhhHHHHHHHHHHHHCCCCCcHHHHHH
Confidence 2 11111111 122333333222 267777777777777777777765443
No 285
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=78.27 E-value=4.7 Score=22.98 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=13.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhC
Q 025612 134 MILMLGKNKQIAMAEELFCELKKE 157 (250)
Q Consensus 134 li~~~~~~~~~~~A~~~~~~m~~~ 157 (250)
|-.+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 345556666666666666655543
No 286
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=78.19 E-value=7.5 Score=20.01 Aligned_cols=28 Identities=11% Similarity=-0.041 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 025612 129 SLYSDMILMLGKNKQIAMAEELFCELKK 156 (250)
Q Consensus 129 ~~y~~li~~~~~~~~~~~A~~~~~~m~~ 156 (250)
.+|..+-..|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4688888899999999999999988765
No 287
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.92 E-value=63 Score=30.88 Aligned_cols=113 Identities=15% Similarity=0.181 Sum_probs=76.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCcccHH-HHHHH----HHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLKADLL-DTLTE----LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-~ll~~----~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~ 141 (250)
+..+++...++-|..+-. ..+..++.. .+... |.+.|++++|.+-|-+-. .-+.|+ .+|.-|..+
T Consensus 341 L~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI--~~le~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI--GFLEPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc--ccCChH-----HHHHHhcCH
Confidence 566666667776666543 445666555 34444 447799999988777654 223333 456777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 025612 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190 (250)
Q Consensus 142 ~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~ 190 (250)
.++..-...++.+.+.|+. +...-+.|+.+|.+.++.++..++.+.-.
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 7777888888888888764 44555778889999888877776665544
No 288
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=77.89 E-value=39 Score=28.11 Aligned_cols=127 Identities=11% Similarity=0.106 Sum_probs=63.2
Q ss_pred HHHHHHHcCC--HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh----CCCCCCHHHHHHHH-
Q 025612 98 TLTELRRQNE--LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKK----EGLDPDTRVYTEMI- 170 (250)
Q Consensus 98 ll~~~~~~~~--~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~----~g~~p~~~ty~~li- 170 (250)
+++.+++.+. +++--+-.++..+..|-.--...+-.+-..|++.++.+.+.++..+..+ .|.+.|....-+=+
T Consensus 83 ~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg 162 (412)
T COG5187 83 RMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLG 162 (412)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHH
Confidence 5555555443 2222223333333334444455666677777777777776666554332 35555543322211
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 171 GVYLQVGMIDKAMETYETMKASGCTPHK----LTFTILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 171 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
-.|+...-+++-++..+.|.+.|...+. .+|..+.....| ++.+|..++-+...
T Consensus 163 ~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~R--nFkeAa~Ll~d~l~ 220 (412)
T COG5187 163 LIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRR--NFKEAAILLSDILP 220 (412)
T ss_pred HhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHH--hhHHHHHHHHHHhc
Confidence 1223333456666667777766654332 344444433333 56666666655443
No 289
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=77.57 E-value=31 Score=26.80 Aligned_cols=92 Identities=13% Similarity=0.034 Sum_probs=55.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcCcccHH---HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHH
Q 025612 64 IQAVHAMKLAKSSSKLEEGFQSRICRLLKADLL---DTLTELRRQNELDLALKVFNFVRKE--VWYKPDLSLYSDMILML 138 (250)
Q Consensus 64 ~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~---~ll~~~~~~~~~~~a~~~~~~m~~~--~g~~~~~~~y~~li~~~ 138 (250)
+.+-.++...|+..+|...|.+....-+.-|.. .+-++....+++.+|...++.+.+- .+-+|| +--.+-+.|
T Consensus 93 ~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~Ll~aR~l 170 (251)
T COG4700 93 YRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHLLFARTL 170 (251)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chHHHHHHH
Confidence 345666777777777777777765543333322 3555555667777777777776542 122333 233445667
Q ss_pred HcCCCHHHHHHHHHHHHhC
Q 025612 139 GKNKQIAMAEELFCELKKE 157 (250)
Q Consensus 139 ~~~~~~~~A~~~~~~m~~~ 157 (250)
...|+.+.|+.-|+.....
T Consensus 171 aa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 171 AAQGKYADAESAFEVAISY 189 (251)
T ss_pred HhcCCchhHHHHHHHHHHh
Confidence 7777777777777776653
No 290
>PRK11906 transcriptional regulator; Provisional
Probab=77.57 E-value=39 Score=29.88 Aligned_cols=109 Identities=15% Similarity=0.096 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHH
Q 025612 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT-RVYTEMIGVYLQVGMIDKAMETY 186 (250)
Q Consensus 108 ~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~a~~~~ 186 (250)
..+|.++-+...+ .+ .-|...-..+=.++...++++.|..+|++-... .||. .+|-..--.++-+|+.++|.+.+
T Consensus 320 ~~~a~~~A~rAve-ld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 320 AQKALELLDYVSD-IT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHh-cC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3444444444433 11 123444444444445555566666666665542 3432 22222222234456677776666
Q ss_pred HHH-HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 025612 187 ETM-KASGCTPHKLTFTILIRNLENAGEEELVAAVR 221 (250)
Q Consensus 187 ~~m-~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~ 221 (250)
++- +-+-.+.-.......|+.|+..+ ++.|..++
T Consensus 396 ~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred HHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 663 32222222334444444555443 34444443
No 291
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=77.50 E-value=28 Score=26.27 Aligned_cols=115 Identities=17% Similarity=0.118 Sum_probs=81.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 025612 112 LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA 191 (250)
Q Consensus 112 ~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 191 (250)
.+....+. ..++.|+...|..+|+.+.+.|.+. .+..+...++.+|+..-...+-.+.. ....+.++=-+|..
T Consensus 14 lEYirSl~-~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLN-QHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHH
Confidence 34555565 4889999999999999999999865 45566777888888888777754443 33445555555544
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hccCCchHHHHHH
Q 025612 192 S-GCTPHKLTFTILIRNLENAGEEELVAAVRRDCI-QYVEFPERFLEEV 238 (250)
Q Consensus 192 ~-g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~-~~g~~pd~~~~~~ 238 (250)
. | ..+..+++.+...|++-+|.++.+... -..+.|..++...
T Consensus 87 RL~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA 130 (167)
T PF07035_consen 87 RLG-----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAA 130 (167)
T ss_pred Hhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHH
Confidence 2 2 256788899999999999999988853 3455666665544
No 292
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=77.47 E-value=46 Score=28.72 Aligned_cols=77 Identities=16% Similarity=0.117 Sum_probs=45.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhC-CCC-CC-HHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 025612 133 DMILMLGKNKQIAMAEELFCELKKE-GLD-PD-TRVYTEMIGVYLQ---VGMIDKAMETYETMKASGCTPHKLTFTILIR 206 (250)
Q Consensus 133 ~li~~~~~~~~~~~A~~~~~~m~~~-g~~-p~-~~ty~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~ 206 (250)
.++-.|-...+++...++.+.|..- .+. ++ ...=-...-++.+ .|+-++|++++..+....-.+++.||..+-+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444577777788888888887664 110 11 1100111223344 6788888888877665555677777777766
Q ss_pred HHH
Q 025612 207 NLE 209 (250)
Q Consensus 207 ~~~ 209 (250)
.|-
T Consensus 226 IyK 228 (374)
T PF13281_consen 226 IYK 228 (374)
T ss_pred HHH
Confidence 664
No 293
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.04 E-value=55 Score=29.35 Aligned_cols=106 Identities=8% Similarity=-0.103 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 025612 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM 189 (250)
Q Consensus 110 ~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m 189 (250)
...+.+....+..|+..+......+... ..|++-.|+.++++....+ ....|+..+...+
T Consensus 184 ~i~~~L~~i~~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~l---------------- 243 (484)
T PRK14956 184 VLQDYSEKLCKIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAIVFT--DSKLTGVKIRKMI---------------- 243 (484)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHHHhC--CCCcCHHHHHHHh----------------
Confidence 3444455444446666666655544432 3477777777777654321 1112222221111
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCchHHHHHHH
Q 025612 190 KASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVY 239 (250)
Q Consensus 190 ~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~~ 239 (250)
|+ ++...+..++++....+....|..++..|.+.|..|..|+..+.
T Consensus 244 ---g~-~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~~~l~ 289 (484)
T PRK14956 244 ---GY-HGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFLWDSI 289 (484)
T ss_pred ---CC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22 24444555555555544455666666666666666665555443
No 294
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=76.85 E-value=26 Score=25.52 Aligned_cols=92 Identities=14% Similarity=0.048 Sum_probs=67.6
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHH---HHHHHHHHHHhcC
Q 025612 137 MLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS-GCTPHKL---TFTILIRNLENAG 212 (250)
Q Consensus 137 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~---ty~~li~~~~~~g 212 (250)
+++..|+.+.|++.|.+-..- .+-....||.=..++--.|+.++|++=+++-.+. |-+ +.. .|..--..|-..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 467889999999999987663 3347889999999999999999999988887664 433 222 2333333455678
Q ss_pred CHHHHHHHHHHHHhccCC
Q 025612 213 EEELVAAVRRDCIQYVEF 230 (250)
Q Consensus 213 ~~~~a~~~~~~m~~~g~~ 230 (250)
+.+.|..=|....+.|-+
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 888888878777776654
No 295
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.65 E-value=28 Score=25.77 Aligned_cols=61 Identities=16% Similarity=0.252 Sum_probs=45.2
Q ss_pred HHHHHHHHHH---HcCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 025612 129 SLYSDMILML---GKNKQIAMAEELFCELKKEGLDPD---TRVYTEMIGVYLQVGMIDKAMETYETMKASG 193 (250)
Q Consensus 129 ~~y~~li~~~---~~~~~~~~A~~~~~~m~~~g~~p~---~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g 193 (250)
.+.+.||+.. ...++++++..+++.|.-- .|+ ..+|-.+| +...|++++|.++|++..+.+
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVL--RPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 3445555444 3589999999999999763 454 45555554 578999999999999998875
No 296
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.59 E-value=5.9 Score=22.56 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=15.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC
Q 025612 169 MIGVYLQVGMIDKAMETYETMKASG 193 (250)
Q Consensus 169 li~~~~~~g~~~~a~~~~~~m~~~g 193 (250)
|-.+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4456666666666666666666543
No 297
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=76.18 E-value=28 Score=25.59 Aligned_cols=95 Identities=14% Similarity=0.049 Sum_probs=64.6
Q ss_pred HHhcCcccHH-----HHHHHHHHcCCHHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHcCCC-HHHHHHHHHHHHh
Q 025612 87 ICRLLKADLL-----DTLTELRRQNELDLALKVFNFVRKEVW----YKPDLSLYSDMILMLGKNKQ-IAMAEELFCELKK 156 (250)
Q Consensus 87 ~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~~g----~~~~~~~y~~li~~~~~~~~-~~~A~~~~~~m~~ 156 (250)
.+.+..++.. .++.-.+.-+++.....+++.+..-.. -..+-.+|++++++.++..- ---+..+|+.|++
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~ 108 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK 108 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 3445555554 255555666777777776666532000 02345679999999977766 4457889999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHH
Q 025612 157 EGLDPDTRVYTEMIGVYLQVGMIDKA 182 (250)
Q Consensus 157 ~g~~p~~~ty~~li~~~~~~g~~~~a 182 (250)
.+.+++..-|..||.++.+- ...+.
T Consensus 109 ~~~~~t~~dy~~li~~~l~g-~~~~~ 133 (145)
T PF13762_consen 109 NDIEFTPSDYSCLIKAALRG-YFHDS 133 (145)
T ss_pred cCCCCCHHHHHHHHHHHHcC-CCCcc
Confidence 89999999999999997775 44333
No 298
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=76.15 E-value=8.6 Score=19.60 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=8.5
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 025612 169 MIGVYLQVGMIDKAMETYETM 189 (250)
Q Consensus 169 li~~~~~~g~~~~a~~~~~~m 189 (250)
+-..|.+.|++++|.+.|++.
T Consensus 7 lg~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 7 LGQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 333444444444444444443
No 299
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=76.01 E-value=23 Score=24.52 Aligned_cols=27 Identities=26% Similarity=0.519 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 025612 165 VYTEMIGVYLQVGMIDKAMETYETMKA 191 (250)
Q Consensus 165 ty~~li~~~~~~g~~~~a~~~~~~m~~ 191 (250)
-|..|+.-|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488888888888888888888888776
No 300
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=75.93 E-value=48 Score=28.12 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=25.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHH
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYS 132 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~ 132 (250)
++++.|.++|.+++|.+++...++-...-|+.....
T Consensus 111 ~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~ 146 (338)
T PF04124_consen 111 QLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVK 146 (338)
T ss_pred HHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHH
Confidence 688888899999988888887754333445544333
No 301
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.22 E-value=31 Score=32.34 Aligned_cols=103 Identities=13% Similarity=0.043 Sum_probs=79.1
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 025612 113 KVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS 192 (250)
Q Consensus 113 ~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 192 (250)
++++.+..+.|....--+.+--+..+...|...+|.++-.+.+ .||-..|=.=+.+++..++|++.+++-+.++.
T Consensus 669 ~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks- 743 (829)
T KOG2280|consen 669 KLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS- 743 (829)
T ss_pred HHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-
Confidence 4444454455555555567777788888899999998877765 47888898889999999999998877666553
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025612 193 GCTPHKLTFTILIRNLENAGEEELVAAVRRDCI 225 (250)
Q Consensus 193 g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~ 225 (250)
+.-|.-++.+|.+.|+.++|.+.+....
T Consensus 744 -----PIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 744 -----PIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred -----CCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 3567779999999999999988876543
No 302
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=74.93 E-value=5.2 Score=19.59 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=9.4
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 025612 203 ILIRNLENAGEEELVAAVR 221 (250)
Q Consensus 203 ~li~~~~~~g~~~~a~~~~ 221 (250)
.+-.++...|++++|.+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3444455555555555544
No 303
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.60 E-value=55 Score=31.27 Aligned_cols=149 Identities=17% Similarity=0.178 Sum_probs=105.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH----HHhc----------C-----cccHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 025612 64 IQAVHAMKLAKSSSKLEEGFQSR----ICRL----------L-----KADLLDTLTELRRQNELDLALKVFNFVRKEVWY 124 (250)
Q Consensus 64 ~~ll~~~~~~~~~~~a~~l~~~m----~~~~----------~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~ 124 (250)
..++.++...++.-.-.-++... ...+ . +-+..+-|+.+++..-++.|..+-..- +
T Consensus 287 ~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~----~- 361 (933)
T KOG2114|consen 287 NRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQ----H- 361 (933)
T ss_pred hheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhc----C-
Confidence 45577788777766433333333 3333 0 112336888999999999998887643 2
Q ss_pred CCCHHHHHHHHHHHH----cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 025612 125 KPDLSLYSDMILMLG----KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT 200 (250)
Q Consensus 125 ~~~~~~y~~li~~~~----~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 200 (250)
.|..+--.+...|+ +.|++++|..-|-+-... +.| .-+|.-|..+..+.+--.+++.+.+.|+. +...
T Consensus 362 -~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dh 433 (933)
T KOG2114|consen 362 -LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDH 433 (933)
T ss_pred -CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchh
Confidence 24455566666665 679999999888775543 233 34678888888888999999999999975 6666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 025612 201 FTILIRNLENAGEEELVAAVRRDCI 225 (250)
Q Consensus 201 y~~li~~~~~~g~~~~a~~~~~~m~ 225 (250)
-+.|+.+|.+.++.+.-.++.+.--
T Consensus 434 ttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 434 TTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHhcchHHHHHHHhcCC
Confidence 7899999999999888777766554
No 304
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=74.08 E-value=44 Score=26.83 Aligned_cols=128 Identities=10% Similarity=0.068 Sum_probs=78.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHcCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLY---SDMILMLGKNKQIAMAEELFCELKKE-GLDPDTRVYTEMIGV 172 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y---~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~ty~~li~~ 172 (250)
..-..+.+.|++++|.+.|+.+... - +-+...- -.+..+|-+.+++++|...|++..+. .-.|+ .-|.-.+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~-y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~-~~~a~Y~~g 113 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNR-Y-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYVLYMRG 113 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-C-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc-hHHHHHHHH
Confidence 3445567899999999999999752 1 2223333 23457778999999999999998775 22232 334444444
Q ss_pred HHh--c---------------CC---hHHHHHHHHHHHHC----CCCCCHHHHH------------HHHHHHHhcCCHHH
Q 025612 173 YLQ--V---------------GM---IDKAMETYETMKAS----GCTPHKLTFT------------ILIRNLENAGEEEL 216 (250)
Q Consensus 173 ~~~--~---------------g~---~~~a~~~~~~m~~~----g~~p~~~ty~------------~li~~~~~~g~~~~ 216 (250)
.+. . .+ ..+|...|+++.+. ...|+..... .+-+-|.+.|.+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~A 193 (243)
T PRK10866 114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVA 193 (243)
T ss_pred HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence 331 1 12 34566777777654 1222222211 22344778888888
Q ss_pred HHHHHHHHHhc
Q 025612 217 VAAVRRDCIQY 227 (250)
Q Consensus 217 a~~~~~~m~~~ 227 (250)
|..=++.+.+.
T Consensus 194 A~~r~~~v~~~ 204 (243)
T PRK10866 194 VVNRVEQMLRD 204 (243)
T ss_pred HHHHHHHHHHH
Confidence 88888887753
No 305
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.97 E-value=40 Score=26.31 Aligned_cols=73 Identities=10% Similarity=0.066 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHHH
Q 025612 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE---GLDPDTRVYTEMIGVYLQVGMIDKAM 183 (250)
Q Consensus 109 ~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~---g~~p~~~ty~~li~~~~~~g~~~~a~ 183 (250)
+.|.+.|-.+.. .+.--++..--.|-..|. ..+.+++..++....+. +-.+|...+.+|.+.|.+.|+.+.|.
T Consensus 123 ~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 578888888854 555567777777777777 67789999998877552 44789999999999999999998874
No 306
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=73.66 E-value=26 Score=23.92 Aligned_cols=47 Identities=6% Similarity=-0.017 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025612 179 IDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCI 225 (250)
Q Consensus 179 ~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~ 225 (250)
.-++.+-++.+....+.|++....+-++||-|.+++..|.++|...+
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33455555555555666666666666666666666666666666555
No 307
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=73.44 E-value=35 Score=27.18 Aligned_cols=73 Identities=21% Similarity=0.127 Sum_probs=55.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKP-DLSLYSDMILMLGKNKQIAMAEELFCELKKE--GLDPDTRVYTEMIGV 172 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~-~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~ty~~li~~ 172 (250)
..+..+.+.+.+.+|+....+-.+. +| |..+=..++..||-.|++++|..-++-.... ...+-..+|..+|.+
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVka---kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKA---KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhc---CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3567888999999999988876653 34 4556677889999999999998777665442 455667788888765
No 308
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=73.30 E-value=61 Score=28.09 Aligned_cols=120 Identities=13% Similarity=0.087 Sum_probs=82.4
Q ss_pred HHHHhcCChhHHHHHHHHHHH-----hcCcccHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHH
Q 025612 68 HAMKLAKSSSKLEEGFQSRIC-----RLLKADLL------------DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSL 130 (250)
Q Consensus 68 ~~~~~~~~~~~a~~l~~~m~~-----~~~~~~~~------------~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~ 130 (250)
..+.+.|++..|..-|++..+ .+.++.-. -+.-++.+.+++..|.+.-+...+ .. ++|+-.
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe-~~-~~N~KA 293 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE-LD-PNNVKA 293 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh-cC-CCchhH
Confidence 367788999999999888653 22222211 255667788999999999988764 22 345555
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCh-HHHHHHHHHHHH
Q 025612 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYL-QVGMI-DKAMETYETMKA 191 (250)
Q Consensus 131 y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~-~~g~~-~~a~~~~~~m~~ 191 (250)
.---=.+|...|+++.|...|+.+.+ +.|+...-+.=|..|. +.... ++..++|..|..
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555778888999999999999988 4676666555444444 44444 445788888864
No 309
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.25 E-value=80 Score=29.39 Aligned_cols=94 Identities=16% Similarity=0.134 Sum_probs=63.2
Q ss_pred HHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-------------CCCHHHHHHHHHHHHh
Q 025612 145 AMAEELFCE-LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGC-------------TPHKLTFTILIRNLEN 210 (250)
Q Consensus 145 ~~A~~~~~~-m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~-------------~p~~~ty~~li~~~~~ 210 (250)
++..+.+.. +...|+..+......++. ...|++..++.++++....|- .++......+++++.+
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~ 263 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ 263 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 344444444 344588777777766665 335888888888876543321 1334445556666665
Q ss_pred cCCHHHHHHHHHHHHhccCCchHHHHHHHHh
Q 025612 211 AGEEELVAAVRRDCIQYVEFPERFLEEVYQK 241 (250)
Q Consensus 211 ~g~~~~a~~~~~~m~~~g~~pd~~~~~~~~~ 241 (250)
|+...+.++++++.+.|..|..++..+...
T Consensus 264 -~d~~~al~~l~~l~~~G~~~~~il~~l~~~ 293 (618)
T PRK14951 264 -GDGRTVVETADELRLNGLSAASTLEEMAAV 293 (618)
T ss_pred -CCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 789999999999999999998877776543
No 310
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.76 E-value=16 Score=23.76 Aligned_cols=46 Identities=11% Similarity=0.094 Sum_probs=27.8
Q ss_pred hcCChHHHHHHHHHHHHCCCC-CCH-HHHHHHHHHHHhcCCHHHHHHH
Q 025612 175 QVGMIDKAMETYETMKASGCT-PHK-LTFTILIRNLENAGEEELVAAV 220 (250)
Q Consensus 175 ~~g~~~~a~~~~~~m~~~g~~-p~~-~ty~~li~~~~~~g~~~~a~~~ 220 (250)
.....++|+..|....+.-.. |+. .++..|+.+|+..|+++++.++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777666554222 222 5567777777777777666554
No 311
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=72.24 E-value=94 Score=29.80 Aligned_cols=92 Identities=11% Similarity=0.060 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-------------CCCCHHHHHHHHHHHHh
Q 025612 145 AMAEELFCELKK-EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG-------------CTPHKLTFTILIRNLEN 210 (250)
Q Consensus 145 ~~A~~~~~~m~~-~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g-------------~~p~~~ty~~li~~~~~ 210 (250)
++..+.+....+ .|+..+......+... ..|++.+++.++++....+ -.+|...+..+++++..
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~~ 258 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALAA 258 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHHc
Confidence 444455555433 3666555555444432 3577777777766543221 12344445566665554
Q ss_pred cCCHHHHHHHHHHHHhccCCchHHHHHHH
Q 025612 211 AGEEELVAAVRRDCIQYVEFPERFLEEVY 239 (250)
Q Consensus 211 ~g~~~~a~~~~~~m~~~g~~pd~~~~~~~ 239 (250)
++.+.+.++++++...|+.+..++..+.
T Consensus 259 -~d~~~~l~~~~~l~~~g~~~~~~l~dLl 286 (830)
T PRK07003 259 -GDGPEILAVADEMALRSLSFSTALQDLA 286 (830)
T ss_pred -CCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 7888888888888888887665554443
No 312
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=72.08 E-value=13 Score=29.23 Aligned_cols=83 Identities=13% Similarity=0.140 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHhCCCC--C-----CHHHHHHHHHHHHhcC---------ChHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 025612 143 QIAMAEELFCELKKEGLD--P-----DTRVYTEMIGVYLQVG---------MIDKAMETYETMKASGCTP-HKLTFTILI 205 (250)
Q Consensus 143 ~~~~A~~~~~~m~~~g~~--p-----~~~ty~~li~~~~~~g---------~~~~a~~~~~~m~~~g~~p-~~~ty~~li 205 (250)
..+.|..++.+|--..++ | ...-|-++..+|++.| +.+.-.++++..++.|++- -++.|+.+|
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiI 215 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSII 215 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceecc
Confidence 368889999888665433 2 4566899999999988 5778888888889988743 458899999
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 025612 206 RNLENAGEEELVAAVRRDCI 225 (250)
Q Consensus 206 ~~~~~~g~~~~a~~~~~~m~ 225 (250)
+.-.-.-+.+.+.+++..++
T Consensus 216 Dk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred ccccCCCCHHHHHHHHHHhh
Confidence 98888889999999998775
No 313
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.96 E-value=57 Score=27.14 Aligned_cols=51 Identities=6% Similarity=-0.014 Sum_probs=24.0
Q ss_pred HHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHH
Q 025612 69 AMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVR 119 (250)
Q Consensus 69 ~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~ 119 (250)
.....|+..+|..+|.......-. .+.. .+..++...|+.+.|..+++.+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 344445555555555554332211 1111 35555555555555555555543
No 314
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=71.91 E-value=65 Score=27.83 Aligned_cols=161 Identities=11% Similarity=0.059 Sum_probs=96.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhcCc-----ccHH-HHHHHHHH---cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 025612 65 QAVHAMKLAKSSSKLEEGFQSRICRLLK-----ADLL-DTLTELRR---QNELDLALKVFNFVRKEVWYKPDLSLYSDMI 135 (250)
Q Consensus 65 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~-----~~~~-~ll~~~~~---~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li 135 (250)
.++-+|-...+++...++.+.+...-.. +.+. ...-++.+ .|+.++|.+++..+.. ..-.++..+|..+-
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~-~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE-SDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh-ccCCCChHHHHHHH
Confidence 3455677778888888888888654211 1111 24445556 7899999999988443 34456777888777
Q ss_pred HHHHc---------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh----HHHHHHH---HH-HHHCCC---C
Q 025612 136 LMLGK---------NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI----DKAMETY---ET-MKASGC---T 195 (250)
Q Consensus 136 ~~~~~---------~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~----~~a~~~~---~~-m~~~g~---~ 195 (250)
+.|-. ....++|...|.+--+ +.||..+--.+...+..+|.. .+..++- .. ..+.|. .
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 77642 1235677777765433 335543322222222333321 1223322 22 223333 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 025612 196 PHKLTFTILIRNLENAGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 196 p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g 228 (250)
.|---+.+++.++.-.|+++.|.+....|.+..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 344557789999999999999999999998763
No 315
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=71.86 E-value=13 Score=22.90 Aligned_cols=20 Identities=30% Similarity=0.326 Sum_probs=8.3
Q ss_pred HHHHHhcCChHHHHHHHHHH
Q 025612 170 IGVYLQVGMIDKAMETYETM 189 (250)
Q Consensus 170 i~~~~~~g~~~~a~~~~~~m 189 (250)
|.+|...|++++|.++++++
T Consensus 30 I~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 30 IYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 44444444444444444433
No 316
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=71.70 E-value=62 Score=27.50 Aligned_cols=87 Identities=16% Similarity=0.250 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhC---CCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHH
Q 025612 130 LYSDMILMLGKNKQIAMAEELFCELKKE---GLDPDTRVYT--EMIGVYLQVGMIDKAMETYETMKA-----SGCTPHKL 199 (250)
Q Consensus 130 ~y~~li~~~~~~~~~~~A~~~~~~m~~~---g~~p~~~ty~--~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~ 199 (250)
..-.++...-+.++.++|.+.++++.+. -=.|+.+.|- .+.+.+...|+.+++.+++++.++ .|+.|+++
T Consensus 77 lvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 77 LVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 3444555555666888888888887653 2245666664 345566678888888888887776 57777664
Q ss_pred H-HHHHHHHHHh-cCCHHH
Q 025612 200 T-FTILIRNLEN-AGEEEL 216 (250)
Q Consensus 200 t-y~~li~~~~~-~g~~~~ 216 (250)
+ |..+-.-|-+ .|++..
T Consensus 157 ~~fY~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 157 SSFYSLSSQYYKKIGDFAS 175 (380)
T ss_pred hhHHHHHHHHHHHHHhHHH
Confidence 4 5555444443 344433
No 317
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.11 E-value=15 Score=23.92 Aligned_cols=46 Identities=15% Similarity=0.082 Sum_probs=20.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHH
Q 025612 104 RQNELDLALKVFNFVRKEVWYKPD-LSLYSDMILMLGKNKQIAMAEE 149 (250)
Q Consensus 104 ~~~~~~~a~~~~~~m~~~~g~~~~-~~~y~~li~~~~~~~~~~~A~~ 149 (250)
..++.++|...|....+...-.++ -.+...|+.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555544321111112 2334555555555555555443
No 318
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=71.07 E-value=51 Score=26.24 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=12.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 025612 169 MIGVYLQVGMIDKAMETYETMKA 191 (250)
Q Consensus 169 li~~~~~~g~~~~a~~~~~~m~~ 191 (250)
-|......|++++|.+...+.-.
T Consensus 70 ~Ir~~I~~G~Ie~Aie~in~l~P 92 (228)
T KOG2659|consen 70 QIRRAIEEGQIEEAIEKVNQLNP 92 (228)
T ss_pred HHHHHHHhccHHHHHHHHHHhCh
Confidence 34455556666666655555443
No 319
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.06 E-value=60 Score=29.69 Aligned_cols=149 Identities=12% Similarity=0.011 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHHhcCcccHH--H--HHHH-HHHcCCHHHHHHHHHHHHHh------CCCCCCHHHHHHHHHHHHcCC---
Q 025612 77 SKLEEGFQSRICRLLKADLL--D--TLTE-LRRQNELDLALKVFNFVRKE------VWYKPDLSLYSDMILMLGKNK--- 142 (250)
Q Consensus 77 ~~a~~l~~~m~~~~~~~~~~--~--ll~~-~~~~~~~~~a~~~~~~m~~~------~g~~~~~~~y~~li~~~~~~~--- 142 (250)
..|...++...+.|..-... . ...+ .+...+++.|...|...-++ .| .....+-+=.+|.+..
T Consensus 229 ~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 229 SEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCc
Confidence 35666666655555433222 1 2222 44556677777777766431 22 2223444445555432
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHH
Q 025612 143 --QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ-VGMIDKAMETYETMKASGCTPHKLTFTILIRNLE--NAGEEELV 217 (250)
Q Consensus 143 --~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~-~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~--~~g~~~~a 217 (250)
+.+.|..+|..-.+.|. |+....-..+.-... ..+...|.++|..--+.|..+ ..-+.+++-... -..+.+.|
T Consensus 306 ~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL-AIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCCCcCCCHHHH
Confidence 45556666666555542 343333333322222 244567777777776666432 111111111111 22356777
Q ss_pred HHHHHHHHhccCC
Q 025612 218 AAVRRDCIQYVEF 230 (250)
Q Consensus 218 ~~~~~~m~~~g~~ 230 (250)
..+++...+.|..
T Consensus 384 ~~~~k~aA~~g~~ 396 (552)
T KOG1550|consen 384 FAYYKKAAEKGNP 396 (552)
T ss_pred HHHHHHHHHccCh
Confidence 7777777777733
No 320
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=70.95 E-value=47 Score=25.79 Aligned_cols=32 Identities=16% Similarity=0.137 Sum_probs=18.0
Q ss_pred hcCCHHHHHHHHHHHHhc-----cC-CchHHHHHHHHh
Q 025612 210 NAGEEELVAAVRRDCIQY-----VE-FPERFLEEVYQK 241 (250)
Q Consensus 210 ~~g~~~~a~~~~~~m~~~-----g~-~pd~~~~~~~~~ 241 (250)
+.|+++.|+++++-|..- .+ .|+...-.+++|
T Consensus 133 ~~~~~~~Ae~~~~~ME~lY~~Lm~fdyP~~l~~~LR~K 170 (204)
T COG2178 133 RKGSFEEAERFLKFMEKLYEELMEFDYPKALVPGLRQK 170 (204)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHH
Confidence 456677777766666532 22 466665555544
No 321
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=70.75 E-value=38 Score=26.99 Aligned_cols=71 Identities=14% Similarity=0.003 Sum_probs=51.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHH-hCCCCCCHHHHHHHHHH
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRK-EVWYKPDLSLYSDMILM 137 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~-~~g~~~~~~~y~~li~~ 137 (250)
+..+.+.++..+++...++-.+..-. .+.. .+++.+|-.|++++|..-++...+ +....+-..+|..+|++
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 67788889999999988887654322 2222 699999999999999876665532 23345557788888865
No 322
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=70.31 E-value=61 Score=26.84 Aligned_cols=119 Identities=8% Similarity=-0.054 Sum_probs=74.3
Q ss_pred HHHHHH-HcCCHHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 025612 98 TLTELR-RQNELDLALKVFNFVRKEVWY---KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY 173 (250)
Q Consensus 98 ll~~~~-~~~~~~~a~~~~~~m~~~~g~---~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~ 173 (250)
++...| ...-.+.|.+.|+.......- ..+...-..++...++.|+.+.-..+++..... ++...-..++.+.
T Consensus 135 ~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aL 211 (324)
T PF11838_consen 135 LLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSAL 211 (324)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHH
T ss_pred HHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhh
Confidence 344444 122256788888887642122 456677788888899999977766666666653 4788889999999
Q ss_pred HhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCC--HHHHHHHH
Q 025612 174 LQVGMIDKAMETYETMKASG-CTPHKLTFTILIRNLENAGE--EELVAAVR 221 (250)
Q Consensus 174 ~~~g~~~~a~~~~~~m~~~g-~~p~~~ty~~li~~~~~~g~--~~~a~~~~ 221 (250)
+...+.+...++++.....+ +++.. . ..++.++...+. .+.+.+++
T Consensus 212 a~~~d~~~~~~~l~~~l~~~~v~~~d-~-~~~~~~~~~~~~~~~~~~~~~~ 260 (324)
T PF11838_consen 212 ACSPDPELLKRLLDLLLSNDKVRSQD-I-RYVLAGLASSNPVGRDLAWEFF 260 (324)
T ss_dssp TT-S-HHHHHHHHHHHHCTSTS-TTT-H-HHHHHHHH-CSTTCHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHcCCcccccHH-H-HHHHHHHhcCChhhHHHHHHHH
Confidence 99999999999999988865 55443 3 344445552332 25555544
No 323
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=69.58 E-value=14 Score=22.66 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 025612 178 MIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 178 ~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
.++.+.++++.++.. +-|-.---.+|.+|...|++++|.+.++++.+.
T Consensus 5 ~~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 5 QLEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp -HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 355666666666553 335666778999999999999999999887653
No 324
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=69.07 E-value=12 Score=31.12 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=35.7
Q ss_pred CCCCHHH-HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 025612 124 YKPDLSL-YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTE 168 (250)
Q Consensus 124 ~~~~~~~-y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~ 168 (250)
+.||..+ ||.-|+...+.||+++|+.+++|.+..|+.--..||-.
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 4456555 58999999999999999999999999887655555533
No 325
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.70 E-value=91 Score=28.20 Aligned_cols=96 Identities=14% Similarity=0.132 Sum_probs=57.0
Q ss_pred HHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC------------CCHHHHHHHHHHHHhc
Q 025612 145 AMAEELFCE-LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCT------------PHKLTFTILIRNLENA 211 (250)
Q Consensus 145 ~~A~~~~~~-m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~------------p~~~ty~~li~~~~~~ 211 (250)
++....+.. +...|+..+......++... .|++..+...++.+...+-. +.....-.+++++ ..
T Consensus 178 ~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~~ 254 (504)
T PRK14963 178 EEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-AQ 254 (504)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-Hc
Confidence 344444444 33457766666655555433 47777777777665443211 1122244455555 44
Q ss_pred CCHHHHHHHHHHHHhccCCchHHHHHHHHhhh
Q 025612 212 GEEELVAAVRRDCIQYVEFPERFLEEVYQKHR 243 (250)
Q Consensus 212 g~~~~a~~~~~~m~~~g~~pd~~~~~~~~~~~ 243 (250)
++.+.|..+++++...|..|..++..+.....
T Consensus 255 ~d~~~Al~~l~~Ll~~G~~~~~Il~~L~~~~r 286 (504)
T PRK14963 255 GDAAEALSGAAQLYRDGFAARTLVEGLLEAFR 286 (504)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 78888888888888888888777666655443
No 326
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=68.23 E-value=6.5 Score=20.76 Aligned_cols=22 Identities=9% Similarity=0.102 Sum_probs=12.1
Q ss_pred CHHHHHHHHHHHHcCCCHHHHH
Q 025612 127 DLSLYSDMILMLGKNKQIAMAE 148 (250)
Q Consensus 127 ~~~~y~~li~~~~~~~~~~~A~ 148 (250)
+...|+.+-..|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 3555555555555555555553
No 327
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=67.39 E-value=38 Score=29.99 Aligned_cols=74 Identities=15% Similarity=0.085 Sum_probs=38.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 025612 132 SDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210 (250)
Q Consensus 132 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~ 210 (250)
..|+.-|.-.|++.+|.+++.++.- -+--..+.+-+++.+.-+.|+-...++++++.-..|+ .|-+.|-++|.|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgm-PfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~R 586 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGM-PFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCC-CcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhh
Confidence 3455555556666666665555421 1112345555666665555555555555555555443 344455555544
No 328
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=67.29 E-value=15 Score=18.70 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 025612 165 VYTEMIGVYLQVGMIDKAMETYETMK 190 (250)
Q Consensus 165 ty~~li~~~~~~g~~~~a~~~~~~m~ 190 (250)
+|..+-..|...|+.++|.+.|++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444555555666666666655543
No 329
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=65.97 E-value=65 Score=30.16 Aligned_cols=79 Identities=13% Similarity=0.075 Sum_probs=56.6
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHcCCCHHH------HHHHHHHHHhCCCCCCHHHH
Q 025612 94 DLLDTLTELRRQNELDLALKVFNFVRKE-VWYKPDLSLYSDMILMLGKNKQIAM------AEELFCELKKEGLDPDTRVY 166 (250)
Q Consensus 94 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~g~~~~~~~y~~li~~~~~~~~~~~------A~~~~~~m~~~g~~p~~~ty 166 (250)
+..+|+.+|.-+|++..+.++++..... .|-+.=...||.-|+...+.|.++- |.+++++ .-+.-|..||
T Consensus 30 ~~~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~---a~ln~d~~t~ 106 (1117)
T COG5108 30 GTASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQ---ARLNGDSLTY 106 (1117)
T ss_pred chHHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHH---hhcCCcchHH
Confidence 3448999999999999999999988631 1212225678999999999998653 3334433 3466799999
Q ss_pred HHHHHHHHh
Q 025612 167 TEMIGVYLQ 175 (250)
Q Consensus 167 ~~li~~~~~ 175 (250)
..|+.+-..
T Consensus 107 all~~~sln 115 (1117)
T COG5108 107 ALLCQASLN 115 (1117)
T ss_pred HHHHHhhcC
Confidence 998876554
No 330
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=65.93 E-value=48 Score=23.93 Aligned_cols=66 Identities=12% Similarity=0.041 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 025612 127 DLSLYSDMILMLGKNK--QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS 192 (250)
Q Consensus 127 ~~~~y~~li~~~~~~~--~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 192 (250)
+..-|++=-.-|.... +--+..+-++.+..-.+.|+.....+-+++|-+.+++..|.++|+-.+..
T Consensus 46 t~EEfd~ry~~yf~r~~iD~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 46 TAEEFDARYEKYFNRPEIDGWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred cHHHHHHHHHHHcCcccchHHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4444444444444322 23456777777777778888888888888888888888888888877654
No 331
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=65.80 E-value=14 Score=18.51 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=8.8
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 025612 102 LRRQNELDLALKVFNFVR 119 (250)
Q Consensus 102 ~~~~~~~~~a~~~~~~m~ 119 (250)
+.+.|++++|.+.|+.+.
T Consensus 10 ~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 10 YYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHH
Confidence 334455555555555544
No 332
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=65.72 E-value=54 Score=24.70 Aligned_cols=62 Identities=10% Similarity=0.124 Sum_probs=41.7
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 025612 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKA 182 (250)
Q Consensus 120 ~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a 182 (250)
+..|+..+..-- .++..+...++.-.|.++++.+.+.+..++..|----|..+.+.|-+.+.
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~ 79 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKV 79 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 457777664433 45555555566677888888888887777777755566777777766543
No 333
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=65.18 E-value=23 Score=24.60 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 025612 130 LYSDMILMLGKNKQIAMAEELFCELKK 156 (250)
Q Consensus 130 ~y~~li~~~~~~~~~~~A~~~~~~m~~ 156 (250)
-|..|+..|-..|.+++|.+++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 499999999999999999999998877
No 334
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=65.08 E-value=86 Score=26.60 Aligned_cols=126 Identities=13% Similarity=0.097 Sum_probs=76.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH---hCCCCCCHHHHHHHHHH-HHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHH
Q 025612 98 TLTELRRQNELDLALKVFNFVRK---EVWYKPDLSLYSDMILM-LGKNKQIAMAEELFCELKKEGLDPD----TRVYTEM 169 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~---~~g~~~~~~~y~~li~~-~~~~~~~~~A~~~~~~m~~~g~~p~----~~ty~~l 169 (250)
.-.-||+.|+.+.|++.+....+ +-|.+-|+.-|.+-+-. |....-+.+-.+..+.|.+.|-.-+ ..+|-.+
T Consensus 110 kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gl 189 (393)
T KOG0687|consen 110 KAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGL 189 (393)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHH
Confidence 55568899999999988887532 35677777666655543 3344445556666666767765443 3556655
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-----HHHHhcCCHHHHHHHHHHHH
Q 025612 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI-----RNLENAGEEELVAAVRRDCI 225 (250)
Q Consensus 170 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li-----~~~~~~g~~~~a~~~~~~m~ 225 (250)
-.. ...++.+|-.+|-+-...=-.--..+|..++ .+.....+.+.=.++.+-=.
T Consensus 190 y~m--svR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g~i~leR~dlktKVi~~~E 248 (393)
T KOG0687|consen 190 YCM--SVRNFKEAADLFLDSVSTFTSYELMSYETFVRYTVITGLIALERVDLKTKVIKCPE 248 (393)
T ss_pred HHH--HHHhHHHHHHHHHHHcccccceecccHHHHHHHHHHHhhheeccchHHhhhcCcHH
Confidence 433 3467888888887766542233344555544 44455566666666655544
No 335
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=64.76 E-value=1.3e+02 Score=28.54 Aligned_cols=106 Identities=16% Similarity=0.070 Sum_probs=78.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 025612 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK-LTFTILIRNL 208 (250)
Q Consensus 130 ~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~ty~~li~~~ 208 (250)
.|...-..+.+.+..++|..++.+.... .+.....|.-.-..+...|.+++|.+.|..-.. +.|+. ...+++-..+
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHH
Confidence 3445556677888888888888876543 334555666666677778999999999988766 44644 5678889999
Q ss_pred HhcCCHHHHHH--HHHHHHhccCCchHHHHHH
Q 025612 209 ENAGEEELVAA--VRRDCIQYVEFPERFLEEV 238 (250)
Q Consensus 209 ~~~g~~~~a~~--~~~~m~~~g~~pd~~~~~~ 238 (250)
.+.|+...|+. ++.++.+.+-......|.+
T Consensus 729 le~G~~~la~~~~~L~dalr~dp~n~eaW~~L 760 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALRLDPLNHEAWYYL 760 (799)
T ss_pred HHhCCcchHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 99999888888 9999999888744444544
No 336
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=64.68 E-value=1.1e+02 Score=27.71 Aligned_cols=92 Identities=12% Similarity=0.082 Sum_probs=58.8
Q ss_pred HHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---C----------CCCHHHHHHHHHHHHhc
Q 025612 146 MAEELFCE-LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG---C----------TPHKLTFTILIRNLENA 211 (250)
Q Consensus 146 ~A~~~~~~-m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g---~----------~p~~~ty~~li~~~~~~ 211 (250)
+..+.+.. +...|+..+......++... .|++..|..++++....| + .++....-.+++++..
T Consensus 182 ~i~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~- 258 (509)
T PRK14958 182 QIAAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAA- 258 (509)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc-
Confidence 33334433 34457777766666555442 588888888887655432 1 2333444555666555
Q ss_pred CCHHHHHHHHHHHHhccCCchHHHHHHHH
Q 025612 212 GEEELVAAVRRDCIQYVEFPERFLEEVYQ 240 (250)
Q Consensus 212 g~~~~a~~~~~~m~~~g~~pd~~~~~~~~ 240 (250)
++.+.+.+++++|.+.|..|..++..+..
T Consensus 259 ~d~~~~l~~~~~l~~~g~~~~~il~~l~~ 287 (509)
T PRK14958 259 KAGDRLLGCVTRLVEQGVDFSNALADLLS 287 (509)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 78888999999999999998877666544
No 337
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=64.67 E-value=63 Score=28.65 Aligned_cols=62 Identities=16% Similarity=0.320 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 025612 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTP--HKLTFTILIRNLENAGEEELVAAVRRDCIQYVEF 230 (250)
Q Consensus 166 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 230 (250)
...|+.-|...|++.+|.+.+.++ |+.. -...+.+++.+.-+.|+-.....++++.-..|.-
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeL---gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI 575 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKEL---GMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI 575 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHh---CCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce
Confidence 345677788889999998877654 3221 2356888888888888877777777766666553
No 338
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=64.32 E-value=20 Score=22.36 Aligned_cols=49 Identities=12% Similarity=0.156 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 025612 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210 (250)
Q Consensus 161 p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~ 210 (250)
|+...++.++..+++-.-++++...+.+..+.|. .+..+|.--++.++|
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4445555566666655556666666666555554 244555555554444
No 339
>PRK09857 putative transposase; Provisional
Probab=64.30 E-value=83 Score=26.14 Aligned_cols=67 Identities=12% Similarity=0.121 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCchH
Q 025612 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPER 233 (250)
Q Consensus 166 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~ 233 (250)
+.+++..-.+.|+.++..++++.+.+. +.+.....-++..-+-..|.-+.+.++-+.|...|+.++.
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~~ 275 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLAD 275 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 455665556667777777777766654 2333344456666666667777778888888888888763
No 340
>PF13934 ELYS: Nuclear pore complex assembly
Probab=64.27 E-value=29 Score=27.59 Aligned_cols=121 Identities=16% Similarity=0.112 Sum_probs=78.8
Q ss_pred cccccCCCcHHHHHHHHHHHhc--CChhHHHHHHHHHHHhcCcccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCH
Q 025612 52 PMWRSRVLSSEAIQAVHAMKLA--KSSSKLEEGFQSRICRLLKADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDL 128 (250)
Q Consensus 52 ~l~~~~~~~~~~~~ll~~~~~~--~~~~~a~~l~~~m~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~ 128 (250)
.....-.+++.....++++--- +++++|.+++- +..+.|+.. .++.++...|+.+.|..+++.+. .. ..+.
T Consensus 68 ~Fa~~f~ip~~~~~~~~g~W~LD~~~~~~A~~~L~---~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~--p~-l~s~ 141 (226)
T PF13934_consen 68 SFARAFGIPPKYIKFIQGFWLLDHGDFEEALELLS---HPSLIPWFPDKILQALLRRGDPKLALRYLRAVG--PP-LSSP 141 (226)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhChHhHHHHHHHhC---CCCCCcccHHHHHHHHHHCCChhHHHHHHHhcC--CC-CCCH
Confidence 3444667788888889998855 56666666653 234445544 69999999999999999999873 11 1233
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCChHHH
Q 025612 129 SLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYL----QVGMIDKA 182 (250)
Q Consensus 129 ~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~----~~g~~~~a 182 (250)
..-+.++.. ..++.+.+|..+-....+. -....+..++..+. +.+..++.
T Consensus 142 ~~~~~~~~~-La~~~v~EAf~~~R~~~~~---~~~~l~e~l~~~~~~~~~~~~~~~~L 195 (226)
T PF13934_consen 142 EALTLYFVA-LANGLVTEAFSFQRSYPDE---LRRRLFEQLLEHCLEECARSGRLDEL 195 (226)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHhCchh---hhHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 334444445 6668999998776665553 12566666666666 45544443
No 341
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=64.19 E-value=36 Score=23.88 Aligned_cols=56 Identities=16% Similarity=0.118 Sum_probs=37.5
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCchHHHHHHHHhh
Q 025612 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVYQKH 242 (250)
Q Consensus 186 ~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~~~~~ 242 (250)
.++.++.|+..+....+..|...++..... ..++-..+.+.|+.++.|...++...
T Consensus 57 ~q~ak~~gI~vsd~evd~~i~~ia~~n~ls-~~ql~~~L~~~G~s~~~~r~~ir~~i 112 (118)
T PF09312_consen 57 LQEAKRLGIKVSDEEVDEAIANIAKQNNLS-VEQLRQQLEQQGISYEEYREQIRKQI 112 (118)
T ss_dssp HHHHHHCT----HHHHHHHHHHHHHHTT---HHHHHHHCHHCT--HHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHcCCC-HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455567899999888888888888887774 56777888888999988888777653
No 342
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=63.85 E-value=84 Score=26.04 Aligned_cols=88 Identities=18% Similarity=0.122 Sum_probs=42.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ-- 175 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~-- 175 (250)
=|.+++..+++.++....-+-.+ .--+....+.--.|-.|.|.+.+..+.++-..=...-=.-+...|.++..-|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq-~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQ-VPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhc-CcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 35556666666655443333221 111222344455555566666666665555433322111233336665555554
Q ss_pred ---cCChHHHHHHH
Q 025612 176 ---VGMIDKAMETY 186 (250)
Q Consensus 176 ---~g~~~~a~~~~ 186 (250)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 46666666554
No 343
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=63.54 E-value=6.1 Score=28.59 Aligned_cols=31 Identities=19% Similarity=0.417 Sum_probs=18.5
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 025612 175 QVGMIDKAMETYETMKASGCTPHKLTFTILIRN 207 (250)
Q Consensus 175 ~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~ 207 (250)
+.|.-.+|..+|..|.+.|-.||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 345555666677777777666653 5555543
No 344
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=63.50 E-value=1.3e+02 Score=28.18 Aligned_cols=52 Identities=17% Similarity=0.054 Sum_probs=39.0
Q ss_pred HHHHHhcCChh--HHHHHHHHHHHhcCcccHHHHHHHHHHcCCHHHHHHHHHHH
Q 025612 67 VHAMKLAKSSS--KLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFV 118 (250)
Q Consensus 67 l~~~~~~~~~~--~a~~l~~~m~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 118 (250)
=++|.+.++.. +...-+++++++|-.|+..-+-+.|+-.|++.+|-++|.+-
T Consensus 605 RkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 605 RKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHc
Confidence 35666666554 55555667788888898887888888889999998888743
No 345
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=63.27 E-value=37 Score=25.62 Aligned_cols=59 Identities=10% Similarity=0.006 Sum_probs=44.0
Q ss_pred HHHhcCcccHH--HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHH
Q 025612 86 RICRLLKADLL--DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIA 145 (250)
Q Consensus 86 m~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~ 145 (250)
+...|+..+.. +++..+...++.-.|.++++.+.+ .+...+..|--.-|+.+...|-+.
T Consensus 17 L~~~GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~-~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLRE-AEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHh-hCCCCCcchHHHHHHHHHHCCCEE
Confidence 45667765554 788888888878889999999975 777777777666677777777553
No 346
>PHA02875 ankyrin repeat protein; Provisional
Probab=63.07 E-value=65 Score=27.84 Aligned_cols=10 Identities=10% Similarity=0.185 Sum_probs=4.3
Q ss_pred HHhcCCHHHH
Q 025612 208 LENAGEEELV 217 (250)
Q Consensus 208 ~~~~g~~~~a 217 (250)
.+..|+.+-+
T Consensus 175 A~~~g~~eiv 184 (413)
T PHA02875 175 AMAKGDIAIC 184 (413)
T ss_pred HHHcCCHHHH
Confidence 3344554433
No 347
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=62.57 E-value=1.2e+02 Score=27.50 Aligned_cols=163 Identities=9% Similarity=0.042 Sum_probs=104.4
Q ss_pred CCcHHHHHHHHHHHhcCChhHHHHHHHHHHHhcC-cccHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 025612 58 VLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLL-KADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMIL 136 (250)
Q Consensus 58 ~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~ 136 (250)
.-......++..++.+..+.-+..+-.+|...|- +.+..+++..|..+ ..+.-..+++.+.+ ..+. |++.-..|..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve-~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE-YDFN-DVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH-hcch-hHHHHHHHHH
Confidence 3344555677788888777777777777776654 34555777777777 55667777777664 3322 3333344444
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 025612 137 MLGKNKQIAMAEELFCELKKEGLDP------DTRVYTEMIGVYLQVGMIDKAMETYETMKA-SGCTPHKLTFTILIRNLE 209 (250)
Q Consensus 137 ~~~~~~~~~~A~~~~~~m~~~g~~p------~~~ty~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~ty~~li~~~~ 209 (250)
.|-+ ++-+.+...|.....+ +.| -...|.-|+..- -.+.|..+.+...+.. .|...-.+.+.-+..-|.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 4444 6667777777766543 222 123455554321 2456667777666654 366666778888888999
Q ss_pred hcCCHHHHHHHHHHHHhc
Q 025612 210 NAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 210 ~~g~~~~a~~~~~~m~~~ 227 (250)
...++++|.+++....+.
T Consensus 217 ~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 217 ENENWTEAIRILKHILEH 234 (711)
T ss_pred cccCHHHHHHHHHHHhhh
Confidence 999999999999876554
No 348
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=62.39 E-value=91 Score=25.97 Aligned_cols=123 Identities=12% Similarity=0.068 Sum_probs=86.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 025612 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM 178 (250)
Q Consensus 99 l~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~ 178 (250)
-......|++.+|..+|........ -+...--.+..+|...|+++.|..+++.+...--......-.+=|.-+.+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~--~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAP--ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCc--ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 3455688999999999999865322 23455667889999999999999999998654222233333344566667777
Q ss_pred hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 179 IDKAMETYETMKASGCTP-HKLTFTILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 179 ~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
..+...+-++.-.. | |...=-.+-..+...|+.+.|.+.+-.+.+
T Consensus 219 ~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 219 TPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777776666664 5 666666777888888888888776655543
No 349
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=62.17 E-value=70 Score=24.57 Aligned_cols=90 Identities=11% Similarity=0.156 Sum_probs=43.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhC-----CCCCCH-HHHHHHHHHHHhc----CC-------hHHHHHHHHHHHHCC
Q 025612 131 YSDMILMLGKNKQIAMAEELFCELKKE-----GLDPDT-RVYTEMIGVYLQV----GM-------IDKAMETYETMKASG 193 (250)
Q Consensus 131 y~~li~~~~~~~~~~~A~~~~~~m~~~-----g~~p~~-~ty~~li~~~~~~----g~-------~~~a~~~~~~m~~~g 193 (250)
|...+--++......++.+++++-.++ .+.|+. .++..+-.+|... .+ +++|.+.|+.-.+
T Consensus 31 WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~-- 108 (186)
T PF06552_consen 31 WGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD-- 108 (186)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--
Confidence 444444454444444444444433221 255664 4455554444443 23 3444444544444
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 025612 194 CTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 194 ~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g 228 (250)
..|+..+|+.-+....+ |-++..++.+.+
T Consensus 109 ~~P~ne~Y~ksLe~~~k------ap~lh~e~~~~~ 137 (186)
T PF06552_consen 109 EDPNNELYRKSLEMAAK------APELHMEIHKQG 137 (186)
T ss_dssp H-TT-HHHHHHHHHHHT------HHHHHHHHHHSS
T ss_pred cCCCcHHHHHHHHHHHh------hHHHHHHHHHHH
Confidence 57999999988888754 555555555443
No 350
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.84 E-value=72 Score=24.57 Aligned_cols=130 Identities=18% Similarity=0.137 Sum_probs=88.6
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHH--HHHhcC
Q 025612 102 LRRQNELDLALKVFNFVRKEVWYKPDLSL-YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR-VYTEMIG--VYLQVG 177 (250)
Q Consensus 102 ~~~~~~~~~a~~~~~~m~~~~g~~~~~~~-y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-ty~~li~--~~~~~g 177 (250)
+++.++.++|+.-|.++.+ .|...-.+. --..-......|+...|...|++.-...-.|-.. -..-|=. .+..+|
T Consensus 68 lA~~~k~d~Alaaf~~lek-tg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEK-TGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHh-cCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc
Confidence 4577889999999999964 554321111 1112233567899999999999987764444433 2222222 245688
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCch
Q 025612 178 MIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232 (250)
Q Consensus 178 ~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd 232 (250)
.+++...-.+-+...|-.-....-..|--+-.+.|++..|..+|..+...-..|.
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 9998888887777666544555556666677799999999999999987655554
No 351
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=61.70 E-value=23 Score=22.91 Aligned_cols=10 Identities=10% Similarity=0.132 Sum_probs=3.9
Q ss_pred HHHHHHcCCC
Q 025612 134 MILMLGKNKQ 143 (250)
Q Consensus 134 li~~~~~~~~ 143 (250)
.+...+..|+
T Consensus 29 ~l~~A~~~~~ 38 (89)
T PF12796_consen 29 ALHYAAENGN 38 (89)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHcCC
Confidence 3333334444
No 352
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=61.68 E-value=50 Score=22.76 Aligned_cols=79 Identities=14% Similarity=0.063 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 025612 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186 (250)
Q Consensus 107 ~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~ 186 (250)
..++|..+-+.+.. .+-. ...+--+-+..+.+.|++++|..+.+.+ .-||...|-+|-. .+.|..+++..-+
T Consensus 20 cHqEA~tIAdwL~~-~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl 91 (115)
T TIGR02508 20 CHQEANTIADWLHL-KGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHHhc-CCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHH
Confidence 35666666666642 2211 1212222234456677777777666554 3567777666543 3566666666666
Q ss_pred HHHHHCC
Q 025612 187 ETMKASG 193 (250)
Q Consensus 187 ~~m~~~g 193 (250)
.+|...|
T Consensus 92 ~rla~sg 98 (115)
T TIGR02508 92 NRLAASG 98 (115)
T ss_pred HHHHhCC
Confidence 6666655
No 353
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=61.24 E-value=1.1e+02 Score=27.66 Aligned_cols=52 Identities=10% Similarity=-0.164 Sum_probs=25.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 025612 104 RQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE 157 (250)
Q Consensus 104 ~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~ 157 (250)
..|+++.+.+...... .-+.....+-.++++..-+.|++++|..+-+-|...
T Consensus 335 ~lg~ye~~~~~~s~~~--~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ 386 (831)
T PRK15180 335 HLGYYEQAYQDISDVE--KIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSN 386 (831)
T ss_pred HhhhHHHHHHHhhchh--hhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcc
Confidence 4455555555554442 122233444555555555555555555555544443
No 354
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=60.34 E-value=1.3e+02 Score=26.92 Aligned_cols=124 Identities=15% Similarity=0.136 Sum_probs=81.9
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--Hhc
Q 025612 103 RRQNELDLALKVFNFVRKEVWYKPD----LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY--LQV 176 (250)
Q Consensus 103 ~~~~~~~~a~~~~~~m~~~~g~~~~----~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~--~~~ 176 (250)
-+.+++.+|.++|..+.++.--.|. ...-+.+|++|.- ++.+.....+.++.+. .| ...|-.+..+. .+.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHh
Confidence 4788999999999998754322222 3345677788764 4567777777777654 23 33344444333 457
Q ss_pred CChHHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 025612 177 GMIDKAMETYETMKAS--GCTP------------HKLTFTILIRNLENAGEEELVAAVRRDCIQYVEF 230 (250)
Q Consensus 177 g~~~~a~~~~~~m~~~--g~~p------------~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 230 (250)
|.+++|.+.+..-.+. +-.| |-.-=++..+.+...|++.++..+++.|...-.+
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llk 160 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLK 160 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhh
Confidence 8899999888776554 3322 2222356677888999999999999998765444
No 355
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=60.12 E-value=74 Score=28.86 Aligned_cols=122 Identities=10% Similarity=0.053 Sum_probs=57.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLY---SDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY 173 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y---~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~ 173 (250)
.++.-|.+.+++++|..++..|- -+.. ....| +.+.+.+.+..--++.+..++.....=..|....-...+.-|
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn--W~~~-g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey 489 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN--WNTM-GEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEY 489 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC--cccc-HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHH
Confidence 46777777777777777777772 2211 22333 333344444444444455555544432223222222233333
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 025612 174 LQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 174 ~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g 228 (250)
.. --.+-|.++|..|...+ .|.--.......|+.|.-++++......|
T Consensus 490 ~d-~V~~~aRRfFhhLLR~~------rfekAFlLAvdi~~~DLFmdlh~~A~~~g 537 (545)
T PF11768_consen 490 RD-PVSDLARRFFHHLLRYQ------RFEKAFLLAVDIGDRDLFMDLHYLAKDKG 537 (545)
T ss_pred HH-HHHHHHHHHHHHHHHhh------HHHHHHHHHHhccchHHHHHHHHHHHhcc
Confidence 33 22334555665555432 23333333344555555555555554444
No 356
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=60.04 E-value=64 Score=26.95 Aligned_cols=72 Identities=11% Similarity=0.007 Sum_probs=53.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----HCCCCCCHHHHH
Q 025612 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK-----ASGCTPHKLTFT 202 (250)
Q Consensus 130 ~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~ty~ 202 (250)
+.+..-+.|..+|.+.+|..+-+....-. +.+...|-.|++.+...|+--.+.+=+++|. +.|+..|...++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 34555678889999999998887766531 3467778888999999999777777777664 348877765554
No 357
>PF13934 ELYS: Nuclear pore complex assembly
Probab=59.15 E-value=90 Score=24.82 Aligned_cols=110 Identities=10% Similarity=0.096 Sum_probs=71.9
Q ss_pred HhcCcccHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH
Q 025612 88 CRLLKADLLDTLTELRRQ--NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165 (250)
Q Consensus 88 ~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t 165 (250)
..++++.....++++.-. ++++.|.+.+-. ..+.|+-. .-++.++...|+.+.|..++..+.-..- +...
T Consensus 72 ~f~ip~~~~~~~~g~W~LD~~~~~~A~~~L~~----ps~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~ 143 (226)
T PF13934_consen 72 AFGIPPKYIKFIQGFWLLDHGDFEEALELLSH----PSLIPWFP--DKILQALLRRGDPKLALRYLRAVGPPLS--SPEA 143 (226)
T ss_pred HhCCCHHHHHHHHHHHHhChHhHHHHHHHhCC----CCCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCCCC--CHHH
Confidence 568888888999998854 566677666632 23333322 2478888889999999999888643221 2222
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 025612 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209 (250)
Q Consensus 166 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~ 209 (250)
-+.++.. ..+|.+.+|+.+-+...+. -....+..++..+.
T Consensus 144 ~~~~~~~-La~~~v~EAf~~~R~~~~~---~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 144 LTLYFVA-LANGLVTEAFSFQRSYPDE---LRRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHhCchh---hhHHHHHHHHHHHH
Confidence 2333333 6679999999887776652 11456777777777
No 358
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.14 E-value=1.5e+02 Score=27.42 Aligned_cols=81 Identities=17% Similarity=0.225 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--------------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 025612 157 EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGC--------------TPHKLTFTILIRNLENAGEEELVAAVRR 222 (250)
Q Consensus 157 ~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~--------------~p~~~ty~~li~~~~~~g~~~~a~~~~~ 222 (250)
.|+..+......++. ...|++..++.+++++...+- ..+......+++++ ..++...+.++++
T Consensus 193 egi~i~~~al~~Ia~--~s~GdlR~aln~Ldql~~~~~~~~It~~~v~~llg~~~~~~i~~lv~al-~~~d~~~al~~l~ 269 (584)
T PRK14952 193 EGVVVDDAVYPLVIR--AGGGSPRDTLSVLDQLLAGAADTHVTYQRALGLLGATDVALIDDAVDAL-AADDAAALFGAIE 269 (584)
T ss_pred cCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHhccCCCCcCHHHHHHHHCCCCHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence 365555555544433 234666666666666543210 11222223344433 3467777777777
Q ss_pred HHHhccCCchHHHHHHHH
Q 025612 223 DCIQYVEFPERFLEEVYQ 240 (250)
Q Consensus 223 ~m~~~g~~pd~~~~~~~~ 240 (250)
++...|..|..++..+..
T Consensus 270 ~l~~~g~d~~~~l~~L~~ 287 (584)
T PRK14952 270 SVIDAGHDPRRFATDLLE 287 (584)
T ss_pred HHHHcCCCHHHHHHHHHH
Confidence 777777777666555443
No 359
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=58.74 E-value=69 Score=26.92 Aligned_cols=58 Identities=14% Similarity=0.208 Sum_probs=48.2
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 025612 148 EELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210 (250)
Q Consensus 148 ~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~ 210 (250)
.+++..|++.++.|.-..|-.+.-.+.+.=.+.+...+|+.+.....+ |..|+..|+.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHH
Confidence 568888999999999999998888889999999999999998875332 7777777764
No 360
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=58.08 E-value=1.1e+02 Score=25.51 Aligned_cols=66 Identities=12% Similarity=0.108 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP---HKLTFTILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 161 p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
....+|..+...+-+.|.++.|...+..+.+.+... ++...-.-.+.+...|+-+.|...++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355678888899999999999999999988754222 344555667777888999999988888776
No 361
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=57.72 E-value=1.1e+02 Score=25.39 Aligned_cols=84 Identities=14% Similarity=0.055 Sum_probs=41.2
Q ss_pred HHHHHhcCChhHHHHHHHHHH--HhcCcccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc---
Q 025612 67 VHAMKLAKSSSKLEEGFQSRI--CRLLKADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK--- 140 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~--~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~--- 140 (250)
|.+++..++|.+++.-.-+-. -..++|.+. --|-.|.|.++...+.++-..=.+.. -..+...|.++...|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p-~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDP-SNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCc-ccCCchhhHHHHHHHHHHHH
Confidence 555666666665554333322 123444443 24445556666666655554432211 12233346666555543
Q ss_pred --CCCHHHHHHHH
Q 025612 141 --NKQIAMAEELF 151 (250)
Q Consensus 141 --~~~~~~A~~~~ 151 (250)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 46666666555
No 362
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=57.44 E-value=23 Score=22.57 Aligned_cols=38 Identities=26% Similarity=0.361 Sum_probs=23.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 025612 175 QVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212 (250)
Q Consensus 175 ~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 212 (250)
-.|+.+++.+++++....|+.|.......+..+..+.|
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 35677777777777776676666666666666655443
No 363
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=57.07 E-value=68 Score=22.82 Aligned_cols=42 Identities=26% Similarity=0.340 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHH
Q 025612 146 MAEELFCELKKEGLDPD-TRVYTEMIGVYLQVGMIDKAMETYE 187 (250)
Q Consensus 146 ~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~~~~ 187 (250)
.+.++|+.|..+|+--. +.-|...-..+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56666666666554433 3445555555566666666666664
No 364
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=56.70 E-value=1e+02 Score=24.75 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=43.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH----HCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025612 168 EMIGVYLQVGMIDKAMETYETMK----ASGC-TPHKLTFTILIRNLENAGEEELVAAVRRDCI 225 (250)
Q Consensus 168 ~li~~~~~~g~~~~a~~~~~~m~----~~g~-~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~ 225 (250)
-|-.-|.+.|++++|.++|+.+. +.|. .+...+...+..++.+.|+.+....+.-+|.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 45578889999999999999874 2343 3455667778888888999988877765553
No 365
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=56.25 E-value=35 Score=23.41 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=16.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHH
Q 025612 132 SDMILMLGKNKQIAMAEELFCELK 155 (250)
Q Consensus 132 ~~li~~~~~~~~~~~A~~~~~~m~ 155 (250)
..+|..|...|+.++|...+.++.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 455667777788888888777763
No 366
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=56.18 E-value=1.1e+02 Score=24.94 Aligned_cols=89 Identities=18% Similarity=0.250 Sum_probs=50.4
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCC-----CHHHH
Q 025612 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE-GLDP-----DTRVY 166 (250)
Q Consensus 93 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p-----~~~ty 166 (250)
|....++-.|.|.=+...=..+|+.. | .|. .|+.-|.+.|+++.|-..+--+... +... +...-
T Consensus 154 ~~~l~Ivv~C~RKtE~~~W~~LF~~l----g-~P~-----dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~a 223 (258)
T PF07064_consen 154 PEYLEIVVNCARKTEVRYWPYLFDYL----G-SPR-----DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCA 223 (258)
T ss_pred cchHHHHHHHHHhhHHHHHHHHHHhc----C-CHH-----HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Confidence 44445666666665554444455433 1 222 5666677777777776555444332 2222 23334
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 025612 167 TEMIGVYLQVGMIDKAMETYETMKA 191 (250)
Q Consensus 167 ~~li~~~~~~g~~~~a~~~~~~m~~ 191 (250)
.-|+......|+|+-+.++.+-++.
T Consensus 224 l~LL~~a~~~~~w~Lc~eL~RFL~~ 248 (258)
T PF07064_consen 224 LRLLVMALESGDWDLCFELVRFLKA 248 (258)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4556677777888888877777664
No 367
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=55.95 E-value=13 Score=26.96 Aligned_cols=30 Identities=20% Similarity=0.029 Sum_probs=22.9
Q ss_pred cCChhHHHHHHHHHHHhcCcccHH-HHHHHH
Q 025612 73 AKSSSKLEEGFQSRICRLLKADLL-DTLTEL 102 (250)
Q Consensus 73 ~~~~~~a~~l~~~m~~~~~~~~~~-~ll~~~ 102 (250)
.|.-..|..+|..|.++|-+||.- +|+.++
T Consensus 108 ygsk~DaY~VF~kML~~G~pPddW~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDDWDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCccHHHHHHHh
Confidence 366667899999999999988765 666654
No 368
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=55.69 E-value=1.2e+02 Score=25.14 Aligned_cols=114 Identities=19% Similarity=0.207 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 025612 62 EAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141 (250)
Q Consensus 62 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~ 141 (250)
..+.+++...+.++.......+..+..- -+....++.+...|++..|.++..+..+- +. +..-|+++=+.-
T Consensus 100 ~~L~Il~~~rkr~~l~~ll~~L~~i~~v---~~~~~~l~~ll~~~dy~~Al~li~~~~~~--l~-~l~~~~c~~~L~--- 170 (291)
T PF10475_consen 100 SGLEILRLQRKRQNLKKLLEKLEQIKTV---QQTQSRLQELLEEGDYPGALDLIEECQQL--LE-ELKGYSCVRHLS--- 170 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--HH-hcccchHHHHHh---
Confidence 3444555555555555555444444321 12225778888999999999999988641 10 111111111111
Q ss_pred CCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 025612 142 KQIAMAEELFCELKKE-----GLDPDTRVYTEMIGVYLQVGMIDKAME 184 (250)
Q Consensus 142 ~~~~~A~~~~~~m~~~-----g~~p~~~ty~~li~~~~~~g~~~~a~~ 184 (250)
.++++-....+++.+. -..-|...|..++.+|.-.|+...+.+
T Consensus 171 ~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 171 SQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHH
Confidence 1223332332222211 114689999999999999998776553
No 369
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=55.65 E-value=35 Score=24.64 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=14.4
Q ss_pred HHHhcCChHHHHHHHHHHHHCCC
Q 025612 172 VYLQVGMIDKAMETYETMKASGC 194 (250)
Q Consensus 172 ~~~~~g~~~~a~~~~~~m~~~g~ 194 (250)
-+...|+++.|+++.+-..+.|.
T Consensus 57 W~~D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 57 WLFDVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred hhhcccCHHHHHHHHHHHHHcCC
Confidence 33566667777776666666654
No 370
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=55.21 E-value=1.5e+02 Score=26.14 Aligned_cols=154 Identities=12% Similarity=0.034 Sum_probs=83.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCcccHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH---H------
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELR--RQNELDLALKVFNFVRKEVWYKPDLSLYSDM---I------ 135 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~l---i------ 135 (250)
..++...++.++|.+.-....+..-.--...++++.+ -.++.+.|..-|++-.+ +.|+-..--++ .
T Consensus 176 a~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 176 AECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHH
Confidence 3445555666766666555543221110112333222 34566677777766542 23442222111 1
Q ss_pred ----HHHHcCCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHH--
Q 025612 136 ----LMLGKNKQIAMAEELFCELKK---EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK-LTFTILI-- 205 (250)
Q Consensus 136 ----~~~~~~~~~~~A~~~~~~m~~---~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~ty~~li-- 205 (250)
+-..+.|++..|.++|.+-.. .+++|+...|-..-....+.|+.++|+.--++... .|. +..-.+.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~syikall~ra 328 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDSSYIKALLRRA 328 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCHHHHHHHHHHH
Confidence 122467888888888877654 35666777777777777788888888876666555 233 2222222
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 025612 206 RNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 206 ~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
+++.-.++++.|.+-++...+.
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 2333456677777766665443
No 371
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=54.77 E-value=1.8e+02 Score=26.96 Aligned_cols=161 Identities=14% Similarity=0.059 Sum_probs=99.4
Q ss_pred HHHHHHH-hcCChhHHHHHHHHHHHhcCcccHH--------HHHHHHHHcCCHHHHHHHHHHHHHhCC---CCCCHHHHH
Q 025612 65 QAVHAMK-LAKSSSKLEEGFQSRICRLLKADLL--------DTLTELRRQNELDLALKVFNFVRKEVW---YKPDLSLYS 132 (250)
Q Consensus 65 ~ll~~~~-~~~~~~~a~~l~~~m~~~~~~~~~~--------~ll~~~~~~~~~~~a~~~~~~m~~~~g---~~~~~~~y~ 132 (250)
.+...+. ...+.++|...+++....--.++.. .++..+.+.+... |....+...+... ..+-...|.
T Consensus 64 ~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~fr 142 (608)
T PF10345_consen 64 RLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFR 142 (608)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHH
Confidence 4455555 5689999999999865332223332 2556666666555 8888888653221 112223333
Q ss_pred HH-HHHHHcCCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHCC---------CCCC
Q 025612 133 DM-ILMLGKNKQIAMAEELFCELKKE---GLDPDTRVYTEMIGVYLQ--VGMIDKAMETYETMKASG---------CTPH 197 (250)
Q Consensus 133 ~l-i~~~~~~~~~~~A~~~~~~m~~~---g~~p~~~ty~~li~~~~~--~g~~~~a~~~~~~m~~~g---------~~p~ 197 (250)
-+ +..+...+++..|.+.++..... .-.|-...+-.++.+... .+..+++.+..+++.... -.|-
T Consensus 143 ll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~q 222 (608)
T PF10345_consen 143 LLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQ 222 (608)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHH
Confidence 33 33333448999999999887654 234555666666666654 455677777777774322 2446
Q ss_pred HHHHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 025612 198 KLTFTILIRNLE--NAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 198 ~~ty~~li~~~~--~~g~~~~a~~~~~~m~~ 226 (250)
..+|..+++.++ ..|+++.+.+.++++.+
T Consensus 223 L~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 223 LKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 678888888776 57787787777666643
No 372
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.64 E-value=1.9e+02 Score=27.30 Aligned_cols=92 Identities=13% Similarity=0.089 Sum_probs=54.6
Q ss_pred HHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-------------CCCCHHHHHHHHHHHHh
Q 025612 145 AMAEELFCEL-KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG-------------CTPHKLTFTILIRNLEN 210 (250)
Q Consensus 145 ~~A~~~~~~m-~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g-------------~~p~~~ty~~li~~~~~ 210 (250)
++..+.+... ...|+..+......++.. ..|++..|..++++....| -..+...+-.++++..+
T Consensus 180 eEI~k~L~~Il~kEgI~id~eAL~~IA~~--S~GdLRdALnLLDQaIayg~g~IT~edV~~lLG~~d~e~IfdLldAI~k 257 (702)
T PRK14960 180 DEITKHLGAILEKEQIAADQDAIWQIAES--AQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLGLIDRTIIYDLILAVHQ 257 (702)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhccCCHHHHHHHHHHHHh
Confidence 3444444443 334666666665555543 3577777777776654332 12233344555666555
Q ss_pred cCCHHHHHHHHHHHHhccCCchHHHHHHH
Q 025612 211 AGEEELVAAVRRDCIQYVEFPERFLEEVY 239 (250)
Q Consensus 211 ~g~~~~a~~~~~~m~~~g~~pd~~~~~~~ 239 (250)
++...+.++++++.+.|..++.++..+.
T Consensus 258 -~d~~~al~~L~el~~~g~d~~~~l~~Ll 285 (702)
T PRK14960 258 -NQREKVSQLLLQFRYQALDVSLVLDQLI 285 (702)
T ss_pred -cCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 5778888888888888888776655543
No 373
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=54.45 E-value=48 Score=25.84 Aligned_cols=57 Identities=11% Similarity=0.058 Sum_probs=45.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC--------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 025612 167 TEMIGVYLQVGMIDKAMETYETMKAS--------------GCTPHKLTFTILIRNLENAGEEELVAAVRRD 223 (250)
Q Consensus 167 ~~li~~~~~~g~~~~a~~~~~~m~~~--------------g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~ 223 (250)
-+++..|.+.-+|.++.++++.|.+. +..+....-|.-...+.+.|.+|-|..++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 45667788888999999999888753 2345556688888999999999999999884
No 374
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=54.33 E-value=1.4e+02 Score=25.65 Aligned_cols=93 Identities=18% Similarity=0.120 Sum_probs=56.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 025612 100 TELRRQNELDLALKVFNFVRKEVWYKP-DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM 178 (250)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~m~~~~g~~~-~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~ 178 (250)
+.|.+.|++++|.+.|..-. .+.| +.++|..-..+|.+...+..|+.=-+.....+ +.=...|+-=..+-...|.
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 46889999999999998654 2456 88899999999999988876665443332210 0001123333333333445
Q ss_pred hHHHHHHHHHHHHCCCCCCH
Q 025612 179 IDKAMETYETMKASGCTPHK 198 (250)
Q Consensus 179 ~~~a~~~~~~m~~~g~~p~~ 198 (250)
..+|.+=++.... ++|+.
T Consensus 181 ~~EAKkD~E~vL~--LEP~~ 198 (536)
T KOG4648|consen 181 NMEAKKDCETVLA--LEPKN 198 (536)
T ss_pred HHHHHHhHHHHHh--hCccc
Confidence 5555555555444 56764
No 375
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=54.24 E-value=46 Score=23.34 Aligned_cols=34 Identities=18% Similarity=0.056 Sum_probs=16.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCchHHHHHH
Q 025612 205 IRNLENAGEEELVAAVRRDCIQYVEFPERFLEEV 238 (250)
Q Consensus 205 i~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ 238 (250)
|+-+-++...++|.++++-|.++|--....-..+
T Consensus 68 iD~lrRC~T~EEALEVInylek~GEIt~e~A~eL 101 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRGEITPEEAKEL 101 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3444445555555555555555554443333333
No 376
>PRK09462 fur ferric uptake regulator; Provisional
Probab=54.18 E-value=67 Score=23.48 Aligned_cols=58 Identities=14% Similarity=0.021 Sum_probs=33.9
Q ss_pred HHHhcCcccHH--HHHHHHHHc-CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH
Q 025612 86 RICRLLKADLL--DTLTELRRQ-NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQI 144 (250)
Q Consensus 86 m~~~~~~~~~~--~ll~~~~~~-~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~ 144 (250)
+.+.|+..+.. .++..+... +..-.|.++++.+.+ .+...+..|.-.-|+.+...|-+
T Consensus 8 l~~~glr~T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~-~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLID-MGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHh-hCCCCCHHHHHHHHHHHHHCCCE
Confidence 34556555444 567776654 356677777777754 55555655555555555555543
No 377
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=53.81 E-value=1.6e+02 Score=26.16 Aligned_cols=29 Identities=14% Similarity=0.171 Sum_probs=17.2
Q ss_pred hcCCHHHHHHHHHHHHhccCCchHHHHHH
Q 025612 210 NAGEEELVAAVRRDCIQYVEFPERFLEEV 238 (250)
Q Consensus 210 ~~g~~~~a~~~~~~m~~~g~~pd~~~~~~ 238 (250)
..++++.|..+++++.+.|..|..++..+
T Consensus 259 ~~~d~~~al~~l~~L~~~g~~~~~iL~~L 287 (451)
T PRK06305 259 TTQNYAQALEPVTDAMNSGVAPAHFLHDL 287 (451)
T ss_pred HcCCHHHHHHHHHHHHHcCcCHHHHHHHH
Confidence 44566666666666666666665554433
No 378
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=53.79 E-value=70 Score=21.92 Aligned_cols=22 Identities=14% Similarity=0.076 Sum_probs=12.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 025612 97 DTLTELRRQNELDLALKVFNFV 118 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m 118 (250)
.++..|...+++++|.+-+.++
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L 28 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLEL 28 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHh
Confidence 3455555556666665555555
No 379
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=53.60 E-value=58 Score=21.36 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=12.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC
Q 025612 169 MIGVYLQVGMIDKAMETYETMKASG 193 (250)
Q Consensus 169 li~~~~~~g~~~~a~~~~~~m~~~g 193 (250)
++.-+.++.-.++|+++++.|.+.|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3444445555555555555555544
No 380
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.49 E-value=1.4e+02 Score=25.49 Aligned_cols=94 Identities=14% Similarity=0.026 Sum_probs=52.9
Q ss_pred HHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-------------CCCCHHHHHHHHHHHHh
Q 025612 145 AMAEELFCEL-KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG-------------CTPHKLTFTILIRNLEN 210 (250)
Q Consensus 145 ~~A~~~~~~m-~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g-------------~~p~~~ty~~li~~~~~ 210 (250)
++..+.+... ...|+..+......++.. ..|++..|...++.....| -.++....-.++++..
T Consensus 181 ~el~~~L~~~~~~~g~~i~~~al~~ia~~--s~G~~R~al~~l~~~~~~~~~~It~~~v~~~l~~~~~~~i~~l~~ai~- 257 (363)
T PRK14961 181 EKIFNFLKYILIKESIDTDEYALKLIAYH--AHGSMRDALNLLEHAINLGKGNINIKNVTDMLGLLNEKQSFLLTDALL- 257 (363)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHH-
Confidence 4444444443 333655555554444432 2477777777776553221 0122233334444544
Q ss_pred cCCHHHHHHHHHHHHhccCCchHHHHHHHHh
Q 025612 211 AGEEELVAAVRRDCIQYVEFPERFLEEVYQK 241 (250)
Q Consensus 211 ~g~~~~a~~~~~~m~~~g~~pd~~~~~~~~~ 241 (250)
.++.+.+.++++++.+.|..|..++..+...
T Consensus 258 ~~~~~~~~~~~~~l~~~g~~~~~il~~l~~~ 288 (363)
T PRK14961 258 KKDSKKTMLLLNKISSIGIEWENILIEMLRF 288 (363)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3688888888888888888888776665443
No 381
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=53.35 E-value=21 Score=24.99 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=23.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNK 142 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~ 142 (250)
.+++.+...+..-.|.++++.+.+ .+...+..|.-.-|+.+...|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~-~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRK-KGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHH-TTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhh-ccCCcCHHHHHHHHHHHHHCC
Confidence 456666666556666666666653 555555544443444444433
No 382
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=53.32 E-value=32 Score=21.45 Aligned_cols=50 Identities=8% Similarity=0.097 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 025612 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175 (250)
Q Consensus 125 ~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~ 175 (250)
.|+...++.++..+++..-+++++..+++...+|. .+..+|---++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 45566778888888887778888888888877765 355666555555554
No 383
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=52.91 E-value=1.8e+02 Score=26.40 Aligned_cols=90 Identities=13% Similarity=0.072 Sum_probs=52.6
Q ss_pred HHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC------C----------CCCHHHHHHHHHH
Q 025612 145 AMAEELFCEL-KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG------C----------TPHKLTFTILIRN 207 (250)
Q Consensus 145 ~~A~~~~~~m-~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g------~----------~p~~~ty~~li~~ 207 (250)
++....+... ...|+..+......++.. ..|++..|...+++....+ + .++....-.|+++
T Consensus 190 ~el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~a 267 (507)
T PRK06645 190 EEIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVEY 267 (507)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHHH
Confidence 3444444433 334666666665555543 3477777777777663321 1 1233334445555
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCchHHHHH
Q 025612 208 LENAGEEELVAAVRRDCIQYVEFPERFLEE 237 (250)
Q Consensus 208 ~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~ 237 (250)
..+ |+.+.|.++++++...|..|..++..
T Consensus 268 i~~-~d~~~Al~~l~~L~~~g~~~~~~l~~ 296 (507)
T PRK06645 268 IIH-RETEKAINLINKLYGSSVNLEIFIES 296 (507)
T ss_pred HHc-CCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 544 77888888888888888888766543
No 384
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=52.65 E-value=47 Score=22.90 Aligned_cols=48 Identities=17% Similarity=0.287 Sum_probs=31.1
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 025612 134 MILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDK 181 (250)
Q Consensus 134 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 181 (250)
++..+...+..-.|.++++.+.+.+..++..|---.|+.+...|-+.+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 455555556666677777777777666666666666666677665543
No 385
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=52.26 E-value=55 Score=22.95 Aligned_cols=35 Identities=14% Similarity=0.120 Sum_probs=18.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 025612 177 GMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212 (250)
Q Consensus 177 g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 212 (250)
|+.++....+=.+.. |...|...+...++++...|
T Consensus 62 Ge~~~~~~~ll~q~~-g~~~d~~~l~~~~~~Hl~rG 96 (113)
T PF08870_consen 62 GEYDDIYEALLKQRY-GPELDDEELPKYFKLHLDRG 96 (113)
T ss_pred CchHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHh
Confidence 555555544444444 44456666666665555443
No 386
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=50.83 E-value=1.6e+02 Score=27.70 Aligned_cols=94 Identities=13% Similarity=0.052 Sum_probs=62.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHh-----cCcccHHHHHHHHHHcCCHHH--HHHHHHHHHHhCCCCCCHHHHHHHH
Q 025612 63 AIQAVHAMKLAKSSSKLEEGFQSRICR-----LLKADLLDTLTELRRQNELDL--ALKVFNFVRKEVWYKPDLSLYSDMI 135 (250)
Q Consensus 63 ~~~ll~~~~~~~~~~~a~~l~~~m~~~-----~~~~~~~~ll~~~~~~~~~~~--a~~~~~~m~~~~g~~~~~~~y~~li 135 (250)
..+++.+|...|++.++.++++.+... -+.|+..-.|+...+.|.++. ...-..+..++..+.-|.-||..|+
T Consensus 31 ~~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~ 110 (1117)
T COG5108 31 TASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLC 110 (1117)
T ss_pred hHHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHH
Confidence 347899999999999999999998743 245666678888889998652 1111112222344677888999888
Q ss_pred HHHHcCCCHHHHHHHHHHHHh
Q 025612 136 LMLGKNKQIAMAEELFCELKK 156 (250)
Q Consensus 136 ~~~~~~~~~~~A~~~~~~m~~ 156 (250)
.+-..--.-....-++.++..
T Consensus 111 ~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 111 QASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HhhcChHhHHhccHHHHHHHH
Confidence 877664444444555555544
No 387
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.54 E-value=2e+02 Score=26.31 Aligned_cols=156 Identities=12% Similarity=0.023 Sum_probs=94.0
Q ss_pred HHhcCChhHHHHHHHHHHH-------hcCcccHHHHHHHHHHc----C-CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 025612 70 MKLAKSSSKLEEGFQSRIC-------RLLKADLLDTLTELRRQ----N-ELDLALKVFNFVRKEVWYKPDLSLYSDMILM 137 (250)
Q Consensus 70 ~~~~~~~~~a~~l~~~m~~-------~~~~~~~~~ll~~~~~~----~-~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~ 137 (250)
.+..++++.|...+....+ .|.++....+-..|.+- . +.+.|..+|...-+ .| .|+....-..+..
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~-~g-~~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE-LG-NPDAQYLLGVLYE 336 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh-cC-CchHHHHHHHHHH
Confidence 4566788888888888766 45443333344444442 2 67789999988753 55 3454444333333
Q ss_pred HHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 025612 138 LGK-NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYL--QVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214 (250)
Q Consensus 138 ~~~-~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~--~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 214 (250)
.+. ..+...|.++|..--..|.. ...-+-+++--.+ ...+...|..++.+.-+.| .|-..--...+..+.. +++
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~ 413 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRY 413 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccc
Confidence 333 46788999999998877742 2222222222222 3447888888888888887 4433333333444444 777
Q ss_pred HHHHHHHHHHHhccCC
Q 025612 215 ELVAAVRRDCIQYVEF 230 (250)
Q Consensus 215 ~~a~~~~~~m~~~g~~ 230 (250)
+.+.-.+..+.+.|..
T Consensus 414 ~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 414 DTALALYLYLAELGYE 429 (552)
T ss_pred cHHHHHHHHHHHhhhh
Confidence 7777777777777665
No 388
>PRK09857 putative transposase; Provisional
Probab=49.56 E-value=1.5e+02 Score=24.60 Aligned_cols=66 Identities=11% Similarity=0.064 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 025612 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH 197 (250)
Q Consensus 131 y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 197 (250)
+..+++...+.++.++..++++.+.+. +.......-++..-+-+.|.-+++.++...|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 567777777778887778888777665 333333444566666667777788889999999998765
No 389
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=49.39 E-value=1.2e+02 Score=23.44 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=23.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 025612 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212 (250)
Q Consensus 170 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 212 (250)
+..|.+.|.+++|.+++++.... |+......-+....+..
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~K 157 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHcc
Confidence 44566677777777777766653 44444444444444443
No 390
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=49.20 E-value=46 Score=21.83 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=14.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 025612 97 DTLTELRRQNELDLALKVFNFVRK 120 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~ 120 (250)
++++-+.++.-.++|+++.+.|.+
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleK 59 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEK 59 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHH
Confidence 455666666666666666666654
No 391
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=49.05 E-value=1.4e+02 Score=25.68 Aligned_cols=78 Identities=12% Similarity=0.063 Sum_probs=50.4
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 025612 137 MLGKNKQIAMAEELFCELKKEGLDP-DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE 215 (250)
Q Consensus 137 ~~~~~~~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 215 (250)
.|.+.|.+++|+++|..-.. +.| |.++|..=..+|.+...+..|+.=-...... | ..-+.+|+|.+.-.
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL----d----~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL----D----KLYVKAYSRRMQAR 175 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh----h----HHHHHHHHHHHHHH
Confidence 47789999999999976433 456 8899998889999988887665443333321 1 23356666655444
Q ss_pred HHHHHHHHH
Q 025612 216 LVAAVRRDC 224 (250)
Q Consensus 216 ~a~~~~~~m 224 (250)
.+.....+.
T Consensus 176 ~~Lg~~~EA 184 (536)
T KOG4648|consen 176 ESLGNNMEA 184 (536)
T ss_pred HHHhhHHHH
Confidence 444433333
No 392
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.70 E-value=1.3e+02 Score=23.54 Aligned_cols=91 Identities=16% Similarity=0.068 Sum_probs=54.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMI-----LMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIG 171 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li-----~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~ 171 (250)
.+-..+..++++++|..-+++... .|....+..++ +.....|.+++|+.+++...+.+.. ......--.
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGD 167 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGD 167 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhh
Confidence 466667777777777777776542 23334444443 3445667777777777776665332 111222235
Q ss_pred HHHhcCChHHHHHHHHHHHHCC
Q 025612 172 VYLQVGMIDKAMETYETMKASG 193 (250)
Q Consensus 172 ~~~~~g~~~~a~~~~~~m~~~g 193 (250)
.+...|+-++|..-|+.-.+.+
T Consensus 168 ill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 168 ILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHcCchHHHHHHHHHHHHcc
Confidence 5667777777777777766654
No 393
>PRK09462 fur ferric uptake regulator; Provisional
Probab=48.69 E-value=1e+02 Score=22.44 Aligned_cols=59 Identities=15% Similarity=0.217 Sum_probs=34.8
Q ss_pred hCCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 025612 121 EVWYKPDLSLYSDMILMLGKN-KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180 (250)
Q Consensus 121 ~~g~~~~~~~y~~li~~~~~~-~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 180 (250)
+.|+.++..= ..++..+... +..-.|.++++.+.+.+...+..|-=--|..+...|-+.
T Consensus 10 ~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 10 KAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 4666655322 3344444443 456677777777777766666666555556666666553
No 394
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=48.31 E-value=2.5e+02 Score=26.70 Aligned_cols=87 Identities=9% Similarity=-0.042 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC---CC----------CCHHHHHHHHHHHHh
Q 025612 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG---LD----------PDTRVYTEMIGVYLQ 175 (250)
Q Consensus 109 ~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g---~~----------p~~~ty~~li~~~~~ 175 (250)
++..+.+....+..|+..+......+++.. .|++..|..+++++...| +. .+......|+.++.+
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~ 258 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN 258 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc
Confidence 455555655555678888887777777665 489999999998765432 11 233345556666555
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH
Q 025612 176 VGMIDKAMETYETMKASGCTPHK 198 (250)
Q Consensus 176 ~g~~~~a~~~~~~m~~~g~~p~~ 198 (250)
|+...++.++++|...|+.+..
T Consensus 259 -~d~~~al~~l~~L~~~G~d~~~ 280 (709)
T PRK08691 259 -QDGAALLAKAQEMAACAVGFDN 280 (709)
T ss_pred -CCHHHHHHHHHHHHHhCCCHHH
Confidence 8899999999999999876654
No 395
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=48.18 E-value=1.6e+02 Score=24.60 Aligned_cols=139 Identities=7% Similarity=0.024 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHH----------HHHHHHHHcCCHHHHHHHHHHHHH---hCCCCCCH
Q 025612 62 EAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLL----------DTLTELRRQNELDLALKVFNFVRK---EVWYKPDL 128 (250)
Q Consensus 62 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~----------~ll~~~~~~~~~~~a~~~~~~m~~---~~g~~~~~ 128 (250)
..+.+.+-..+..+.++|..++.+....|...+-. .+-+.|.+.|+...-.++....++ ...-.-.+
T Consensus 5 ~sle~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~ 84 (421)
T COG5159 5 SSLELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKIT 84 (421)
T ss_pred chHHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHH
Confidence 34666777888999999999999999888876543 377778888887655444443221 11112245
Q ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHH----HHCCCCCCH
Q 025612 129 SLYSDMILMLGKNK-QIAMAEELFCELKKEGLDPD-----TRVYTEMIGVYLQVGMIDKAMETYETM----KASGCTPHK 198 (250)
Q Consensus 129 ~~y~~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~-----~~ty~~li~~~~~~g~~~~a~~~~~~m----~~~g~~p~~ 198 (250)
....+||..+-... .++...++.....+...+-. ...=.-+|..+.+.|.+.+|+.+...+ ++..-+|+.
T Consensus 85 KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~L 164 (421)
T COG5159 85 KIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINL 164 (421)
T ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccce
Confidence 56667777665443 35555555555443311111 122356788899999999998876554 444445555
Q ss_pred HH
Q 025612 199 LT 200 (250)
Q Consensus 199 ~t 200 (250)
.+
T Consensus 165 i~ 166 (421)
T COG5159 165 IT 166 (421)
T ss_pred ee
Confidence 44
No 396
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=48.15 E-value=57 Score=19.31 Aligned_cols=33 Identities=15% Similarity=0.093 Sum_probs=19.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 025612 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205 (250)
Q Consensus 171 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li 205 (250)
-++.+.|++++|.+..+.+.+ +.|+..-...|-
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHH
Confidence 356677777777777777766 456665544443
No 397
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=48.01 E-value=46 Score=23.21 Aligned_cols=45 Identities=20% Similarity=0.192 Sum_probs=24.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 025612 168 EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212 (250)
Q Consensus 168 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 212 (250)
+++......+..-.|.++++.|.+.|...+..|.---|+.+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 445555555556666666666666666666655444445554444
No 398
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=47.86 E-value=2e+02 Score=25.42 Aligned_cols=117 Identities=17% Similarity=0.015 Sum_probs=81.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhCCCCCCHHHH-------------
Q 025612 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG--KNKQIAMAEELFCELKKEGLDPDTRVY------------- 166 (250)
Q Consensus 102 ~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~--~~~~~~~A~~~~~~m~~~g~~p~~~ty------------- 166 (250)
+.-.|+.++|.++-....+. -....+-..+++.+ -.++.+.|...|++-.. +.|+-..-
T Consensus 179 l~~~~~~~~a~~ea~~ilkl----d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKL----DATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhcccchhHHHHHHHHHhc----ccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHH
Confidence 44668888888888877652 23455666666655 35677888888877554 34543321
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 025612 167 TEMIGVYLQVGMIDKAMETYETMKA---SGCTPHKLTFTILIRNLENAGEEELVAAVRRDC 224 (250)
Q Consensus 167 ~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m 224 (250)
.-=-+-..+.|.+..|.+.|.+-.. .+++|+...|...-.+..+.|+.++|..-.++.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~A 313 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEA 313 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence 1112345678999999999998765 378888888999999999999998887655443
No 399
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=47.81 E-value=30 Score=18.24 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=15.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHH
Q 025612 178 MIDKAMETYETMKASGCTPHKLTFT 202 (250)
Q Consensus 178 ~~~~a~~~~~~m~~~g~~p~~~ty~ 202 (250)
.++.|..+|++... +.|++.+|.
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHH
Confidence 46777778877776 347766654
No 400
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=47.73 E-value=59 Score=22.48 Aligned_cols=36 Identities=11% Similarity=0.064 Sum_probs=21.1
Q ss_pred CChHHHHHHHHHHH--HCCCCCCHHHHHHHHHHHHhcC
Q 025612 177 GMIDKAMETYETMK--ASGCTPHKLTFTILIRNLENAG 212 (250)
Q Consensus 177 g~~~~a~~~~~~m~--~~g~~p~~~ty~~li~~~~~~g 212 (250)
|++++....+=.+. ..|..+|...+...++++...|
T Consensus 61 Ge~~~i~~alLkq~~~~~~~~~d~e~l~~~~~lHl~rG 98 (105)
T TIGR03184 61 GEYGDIYLALLKQRCVADGPELDDESLAKALNLHVHRG 98 (105)
T ss_pred CchHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 66666555443333 4566667777766666666544
No 401
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.57 E-value=1.8e+02 Score=24.96 Aligned_cols=118 Identities=11% Similarity=-0.057 Sum_probs=84.1
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH--HHHHHHH--HHHHhcCC
Q 025612 103 RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT--RVYTEMI--GVYLQVGM 178 (250)
Q Consensus 103 ~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~ty~~li--~~~~~~g~ 178 (250)
.-.|++.+|...++++.+ ..+-|...++-.=++|...|+.+.-...+++...+ -.||. .+|-.=| -++...|-
T Consensus 114 ~~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 456777788888888864 35667788888888899999999988888887654 12333 3332223 34446899
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 025612 179 IDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDC 224 (250)
Q Consensus 179 ~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m 224 (250)
+++|++.-++-.+-+ +.|.-.-.++-..+--.|++.++.++..+-
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 999998888776643 346677777777888888998888876543
No 402
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=47.23 E-value=2.7e+02 Score=26.87 Aligned_cols=87 Identities=7% Similarity=-0.054 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC---C----------CCCHHHHHHHHHHHH
Q 025612 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG---L----------DPDTRVYTEMIGVYL 174 (250)
Q Consensus 108 ~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g---~----------~p~~~ty~~li~~~~ 174 (250)
.++..+.+..+.+..|+..+......+.+.. .|++..|+.++++....+ + .+|...+..++..+.
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A--~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~ 257 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLARAA--QGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALA 257 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3455666666555567766666555554433 588888888877654321 1 133334555555544
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC
Q 025612 175 QVGMIDKAMETYETMKASGCTPH 197 (250)
Q Consensus 175 ~~g~~~~a~~~~~~m~~~g~~p~ 197 (250)
.|+..+++.+++++...|+.+.
T Consensus 258 -~~d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 258 -AGDGPEILAVADEMALRSLSFS 279 (830)
T ss_pred -cCCHHHHHHHHHHHHHhCCCHH
Confidence 4889999999999998887654
No 403
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=47.05 E-value=32 Score=16.01 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 025612 166 YTEMIGVYLQVGMIDKAMETYETMK 190 (250)
Q Consensus 166 y~~li~~~~~~g~~~~a~~~~~~m~ 190 (250)
|..+-..|...|++++|...|+...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444455555555666655555443
No 404
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=47.01 E-value=85 Score=20.95 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=37.9
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 025612 93 ADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELF 151 (250)
Q Consensus 93 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~ 151 (250)
|.+..+-.-|-+.|-.+.+.+.+..-+++.|-. .|...|+.++-.++.-.-|++++
T Consensus 33 ~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~eg~~---Atv~~Lv~AL~~c~l~~lAe~l~ 88 (90)
T cd08780 33 PAIDNLAYEYDREGLYEQAYQLLRRFIQSEGKK---ATLQRLVQALEENGLTSLAEDLL 88 (90)
T ss_pred hHHHHHHhhcccccHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHccchHHHHHHh
Confidence 333356666777777888888877765555543 56777888887777766666654
No 405
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=47.00 E-value=1.1e+02 Score=22.34 Aligned_cols=89 Identities=12% Similarity=-0.003 Sum_probs=36.1
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 025612 137 MLGKNKQIAMAEELFCELKKEGL--DPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEE 214 (250)
Q Consensus 137 ~~~~~~~~~~A~~~~~~m~~~g~--~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 214 (250)
.+...|+++.|...|.+.....- ......+......+...++.+.+...+.......-......+..+-..+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 44445555555555554422110 0122222222333444445555555554444421110234444444444444444
Q ss_pred HHHHHHHHHHH
Q 025612 215 ELVAAVRRDCI 225 (250)
Q Consensus 215 ~~a~~~~~~m~ 225 (250)
+.+...+....
T Consensus 219 ~~a~~~~~~~~ 229 (291)
T COG0457 219 EEALEYYEKAL 229 (291)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 406
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=46.67 E-value=73 Score=24.86 Aligned_cols=56 Identities=9% Similarity=-0.032 Sum_probs=37.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-------CC------CCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKE-------VW------YKPDLSLYSDMILMLGKNKQIAMAEELFC 152 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~-------~g------~~~~~~~y~~li~~~~~~~~~~~A~~~~~ 152 (250)
+++..|-+.-++.++.++++.|.+- .| ..+--...|.-...+.+.|.+|.|..++.
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 5778888888899999988888641 11 12223445666677777777777777766
No 407
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=46.47 E-value=3.3e+02 Score=27.54 Aligned_cols=81 Identities=11% Similarity=0.114 Sum_probs=50.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 176 (250)
.-+.+|-.+|+|.+|..+..++.. +-..-..+--.|+.-+...+++-+|-++..+..+. +.-.+.-|+++
T Consensus 970 kAl~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka 1039 (1265)
T KOG1920|consen 970 KALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKA 1039 (1265)
T ss_pred HHHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhH
Confidence 356677777888888887777742 21111223367777788888888888887776653 23344455666
Q ss_pred CChHHHHHHHH
Q 025612 177 GMIDKAMETYE 187 (250)
Q Consensus 177 g~~~~a~~~~~ 187 (250)
..+++|.++-.
T Consensus 1040 ~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1040 KEWEEALRVAS 1050 (1265)
T ss_pred hHHHHHHHHHH
Confidence 66666665543
No 408
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=46.36 E-value=2.9e+02 Score=30.15 Aligned_cols=109 Identities=17% Similarity=0.095 Sum_probs=67.6
Q ss_pred HHHHHhcCChhHHHHHHHHH----HHhcCcccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 025612 67 VHAMKLAKSSSKLEEGFQSR----ICRLLKADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m----~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~ 141 (250)
..+-.+++.+.+|...|+.- ++....-... .+...|+..+++|...-+...-.. .|+ .+ .-|-.....
T Consensus 1390 a~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~s--l~-~qil~~e~~ 1462 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPS--LY-QQILEHEAS 1462 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----Ccc--HH-HHHHHHHhh
Confidence 44566778888999988883 2222222222 345588888888887777664211 222 23 344455667
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHH
Q 025612 142 KQIAMAEELFCELKKEGLDPD-TRVYTEMIGVYLQVGMIDKAME 184 (250)
Q Consensus 142 ~~~~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~ 184 (250)
|++..|...|+.+.+. .|+ ..+|+-++..-...|.++.+.-
T Consensus 1463 g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~ 1504 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEIL 1504 (2382)
T ss_pred ccHHHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHh
Confidence 8888999999988775 344 5566666655555566555544
No 409
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=46.13 E-value=1.8e+02 Score=26.19 Aligned_cols=166 Identities=13% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCChh------HHHHHHHHHHHhcCcccHHH-------HHHHHHHcC-CHHHHHHHHHHHHH--hCCC
Q 025612 61 SEAIQAVHAMKLAKSSS------KLEEGFQSRICRLLKADLLD-------TLTELRRQN-ELDLALKVFNFVRK--EVWY 124 (250)
Q Consensus 61 ~~~~~ll~~~~~~~~~~------~a~~l~~~m~~~~~~~~~~~-------ll~~~~~~~-~~~~a~~~~~~m~~--~~g~ 124 (250)
.+++..++...+.++.- .|-++|.++.++|+.||+.+ .+.+|+-.| .++++.++..+=.+ ..-.
T Consensus 211 deal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~ee~~~lr~~dp~~~~~~~ 290 (545)
T TIGR01228 211 DEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVEDADKLRQEEPEAYVKAA 290 (545)
T ss_pred HHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHHHHHHHHHhCHHHHHHHH
Q ss_pred CCCHHHHHHHHHHHHcCCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---------------cCChHHHHHHHH
Q 025612 125 KPDLSLYSDMILMLGKNKQ--IAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ---------------VGMIDKAMETYE 187 (250)
Q Consensus 125 ~~~~~~y~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~---------------~g~~~~a~~~~~ 187 (250)
..+..---..|..+.+.|- +|--..+..+..+.|++ +.+.|-..+..|.+ .|+.++..+.=+
T Consensus 291 ~~Sm~rhv~Am~~~~~~Ga~~fDYGN~~r~~a~~aG~~-~aF~~PgfV~~~irplF~~G~GPFRWvaLSGdpeDi~~TD~ 369 (545)
T TIGR01228 291 KQSMAKHVRAMLAFQKQGSVTFDYGNNIRQVAKEEGVE-DAFDFPGFVPAYIRPLFCRGKGPFRWVALSGDPADIYRTDA 369 (545)
T ss_pred HHHHHHHHHHHHHHHHCCCeeeeccHHHHHHHHHcCcc-ccCCCCCchhhhcchhhhCcCCCceeEecCCCHHHHHHHHH
Q ss_pred HHHHCCCCCCHHHHHHHHHH--------------HHhcCCHHHHHHHHHHHHhcc
Q 025612 188 TMKASGCTPHKLTFTILIRN--------------LENAGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 188 ~m~~~g~~p~~~ty~~li~~--------------~~~~g~~~~a~~~~~~m~~~g 228 (250)
.+.+. +.+|...++-+=.| |...|.-.++-..|++|++.|
T Consensus 370 ~~~e~-~~~~~~~~~WI~~A~e~~~fqGlpARI~wlg~~eR~~~~l~fNe~V~~G 423 (545)
T TIGR01228 370 AVKEL-FPEDAHLHRWIDMAQERVSFQGLPARICWLGYGERAKLGLAINEMVRSG 423 (545)
T ss_pred HHHHH-CCCcHHHHHHHHHHHhcCcccCCchhhhhcCccHHHHHHHHHHHHHHcC
No 410
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=45.98 E-value=88 Score=20.80 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=27.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025612 184 ETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCI 225 (250)
Q Consensus 184 ~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~ 225 (250)
++|+--...|+..|+..|..+++.+.-+--.+...++++.|-
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 566666666666666666666666666556666666666664
No 411
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=45.65 E-value=2.3e+02 Score=25.62 Aligned_cols=118 Identities=10% Similarity=0.067 Sum_probs=74.0
Q ss_pred HHcCCHHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 025612 103 RRQNELDLA-LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDK 181 (250)
Q Consensus 103 ~~~~~~~~a-~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 181 (250)
...|++-.| .++|+-+++..| .|+....-+. .+...|+++.+...+..... -+.....|-.++++...+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~-~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~-~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQ-DPVLIQLRSV--IFSHLGYYEQAYQDISDVEK-IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCC-CchhhHHHHH--HHHHhhhHHHHHHHhhchhh-hhcCCchHHHHHHHhhhchhhHHH
Confidence 455666554 567777765333 4454333333 35567899999888876543 244577888999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025612 182 AMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCI 225 (250)
Q Consensus 182 a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~ 225 (250)
|..+-.-|....++ +......---..-..|-++++.-.|+.+.
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHh
Confidence 99999888877654 23222222222223455666665555543
No 412
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=44.85 E-value=73 Score=19.55 Aligned_cols=48 Identities=17% Similarity=0.113 Sum_probs=21.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----cCCCHHHHHHH
Q 025612 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG-----KNKQIAMAEEL 150 (250)
Q Consensus 102 ~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~-----~~~~~~~A~~~ 150 (250)
+.+.|++-+|.++++.+-. ..-.+....|-.||...+ +.|+...|.++
T Consensus 9 l~n~g~f~EaHEvlE~~W~-~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWK-AAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCC-CT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHH-HCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 3455666666666665532 111123444444444432 44555555544
No 413
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=44.83 E-value=91 Score=20.67 Aligned_cols=19 Identities=16% Similarity=0.052 Sum_probs=9.5
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 025612 207 NLENAGEEELVAAVRRDCI 225 (250)
Q Consensus 207 ~~~~~g~~~~a~~~~~~m~ 225 (250)
.+...|+.++|.+.+++..
T Consensus 50 ~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 3344555555555555543
No 414
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=44.69 E-value=20 Score=22.18 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=19.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCCCHH
Q 025612 104 RQNELDLALKVFNFVRKEVWYKPDLS 129 (250)
Q Consensus 104 ~~~~~~~a~~~~~~m~~~~g~~~~~~ 129 (250)
..-+++.|...|.++.....++|+.+
T Consensus 37 ~~Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 37 NNWDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred cCCCHHHHHHHHHHHHhcCCCChhhc
Confidence 45678899999999876556666653
No 415
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.40 E-value=2.5e+02 Score=25.53 Aligned_cols=88 Identities=9% Similarity=-0.027 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC---CC----------CCHHHHHHHHHHHHh
Q 025612 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG---LD----------PDTRVYTEMIGVYLQ 175 (250)
Q Consensus 109 ~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g---~~----------p~~~ty~~li~~~~~ 175 (250)
++..+.+....+..|+..+......++... .|++..|..++++....| +. ++....-.|+.+..
T Consensus 181 ~~i~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~- 257 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA- 257 (509)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-
Confidence 344444444444578877777766666554 588999999998765543 11 23333455555544
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH
Q 025612 176 VGMIDKAMETYETMKASGCTPHKL 199 (250)
Q Consensus 176 ~g~~~~a~~~~~~m~~~g~~p~~~ 199 (250)
.|+.+.++.++++|...|..|...
T Consensus 258 ~~d~~~~l~~~~~l~~~g~~~~~i 281 (509)
T PRK14958 258 AKAGDRLLGCVTRLVEQGVDFSNA 281 (509)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHH
Confidence 488999999999999999887643
No 416
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.36 E-value=2.7e+02 Score=26.01 Aligned_cols=87 Identities=14% Similarity=0.051 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-------------CCCHHHHHHHHHHHHh
Q 025612 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGL-------------DPDTRVYTEMIGVYLQ 175 (250)
Q Consensus 109 ~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~-------------~p~~~ty~~li~~~~~ 175 (250)
++..+.+....+..|+..+......++.. ..|++..+..++++....|- .++......++.+...
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~ 263 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ 263 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 44455555544457888887777777763 34889999988876544331 1233344455555544
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH
Q 025612 176 VGMIDKAMETYETMKASGCTPHK 198 (250)
Q Consensus 176 ~g~~~~a~~~~~~m~~~g~~p~~ 198 (250)
|+...+++++++|...|..|..
T Consensus 264 -~d~~~al~~l~~l~~~G~~~~~ 285 (618)
T PRK14951 264 -GDGRTVVETADELRLNGLSAAS 285 (618)
T ss_pred -CCHHHHHHHHHHHHHcCCCHHH
Confidence 8899999999999998877654
No 417
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=44.10 E-value=65 Score=22.18 Aligned_cols=48 Identities=15% Similarity=0.071 Sum_probs=31.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHH
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIA 145 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~ 145 (250)
.+++.+...+..-.|.++++.+.+ .+...+..|.-..|+.+...|-+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~-~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRK-KGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhCCCEE
Confidence 466666666666677888888864 555666666655666666666543
No 418
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.83 E-value=1.6e+02 Score=23.10 Aligned_cols=89 Identities=15% Similarity=0.114 Sum_probs=67.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 025612 135 ILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI-----GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209 (250)
Q Consensus 135 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li-----~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~ 209 (250)
-..+..++++++|..-++.-... |....+..++ +.....|.+|+|+.+++.....+..+ .....-=+.+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHH
Confidence 35678899999999999876653 3444555544 45667899999999999888865433 22334447888
Q ss_pred hcCCHHHHHHHHHHHHhcc
Q 025612 210 NAGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 210 ~~g~~~~a~~~~~~m~~~g 228 (250)
..|+-++|..-|..-.+.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 9999999999999988877
No 419
>PHA02798 ankyrin-like protein; Provisional
Probab=42.85 E-value=1.2e+02 Score=27.14 Aligned_cols=148 Identities=13% Similarity=0.018 Sum_probs=69.3
Q ss_pred HHHHHHHHhcCcccHH-----H-HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHcCCCHHHHHHHHH
Q 025612 81 EGFQSRICRLLKADLL-----D-TLTELRRQNELDLALKVFNFVRKEVWYKPDLSL--YSDMILMLGKNKQIAMAEELFC 152 (250)
Q Consensus 81 ~l~~~m~~~~~~~~~~-----~-ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~--y~~li~~~~~~~~~~~A~~~~~ 152 (250)
++.+.+.+.|..++.. + |..++.....+....++.+.+.+ .|..++... -.+.+...+..+.. .-.++..
T Consensus 52 ~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~-~GadiN~~d~~G~TpLh~a~~~~~~-~~~~iv~ 129 (489)
T PHA02798 52 DIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIE-NGADINKKNSDGETPLYCLLSNGYI-NNLEILL 129 (489)
T ss_pred HHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHH-CCCCCCCCCCCcCcHHHHHHHcCCc-ChHHHHH
Confidence 3444455667766542 2 32222221222334566777664 776665332 22444444444432 2345666
Q ss_pred HHHhCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 153 ELKKEGLDPDTRV---YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT---FTILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 153 ~m~~~g~~p~~~t---y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t---y~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
.+.+.|..++... ++. +..+++.|. ..-.++.+.+.+.|..++... -.+.+..+.+.+--..-.++++.+.+
T Consensus 130 ~Ll~~Gadvn~~d~~g~tp-L~~a~~~~~-~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~ 207 (489)
T PHA02798 130 FMIENGADTTLLDKDGFTM-LQVYLQSNH-HIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVD 207 (489)
T ss_pred HHHHcCCCccccCCCCCcH-HHHHHHcCC-cchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHH
Confidence 6677787776532 333 444455554 122344555666777665431 11223333322111112345666666
Q ss_pred ccCCch
Q 025612 227 YVEFPE 232 (250)
Q Consensus 227 ~g~~pd 232 (250)
.|..++
T Consensus 208 ~Ga~i~ 213 (489)
T PHA02798 208 NGFIIN 213 (489)
T ss_pred CCCCcc
Confidence 776543
No 420
>KOG2536 consensus MAM33, mitochondrial matrix glycoprotein [Energy production and conversion]
Probab=42.66 E-value=80 Score=25.62 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=9.8
Q ss_pred hcCcccHHHHHHHHHHcCCHHH
Q 025612 89 RLLKADLLDTLTELRRQNELDL 110 (250)
Q Consensus 89 ~~~~~~~~~ll~~~~~~~~~~~ 110 (250)
+|+.++...+|.+|....+..+
T Consensus 228 RGI~esl~~FL~~ym~~Kd~rE 249 (263)
T KOG2536|consen 228 RGIKESLASFLHAYMKNKDSRE 249 (263)
T ss_pred cCCCHHHHHHHHHHHhhhhHHH
Confidence 4444444444444444444433
No 421
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=42.57 E-value=1.2e+02 Score=21.37 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=14.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCC
Q 025612 170 IGVYLQVGMIDKAMETYETMKASG 193 (250)
Q Consensus 170 i~~~~~~g~~~~a~~~~~~m~~~g 193 (250)
|.-+-++...++|+++++.|.+.|
T Consensus 68 iD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 444555666666666666666665
No 422
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=42.39 E-value=2.9e+02 Score=25.73 Aligned_cols=27 Identities=19% Similarity=0.086 Sum_probs=16.0
Q ss_pred CCHHHHHHHHHHHHhccCCchHHHHHH
Q 025612 212 GEEELVAAVRRDCIQYVEFPERFLEEV 238 (250)
Q Consensus 212 g~~~~a~~~~~~m~~~g~~pd~~~~~~ 238 (250)
|+.+.|..+++.+...|..|-.++..+
T Consensus 272 gd~~~Al~~l~~l~~~G~~p~~il~~L 298 (598)
T PRK09111 272 GDVAAALAEFRAQYDAGADPVVVLTDL 298 (598)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 566666666666666666665444443
No 423
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=42.27 E-value=2.7e+02 Score=25.43 Aligned_cols=90 Identities=12% Similarity=0.086 Sum_probs=40.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhcCcccHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 025612 65 QAVHAMKLAKSSSKLEEGFQSRICRLLKADLL----DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK 140 (250)
Q Consensus 65 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~ 140 (250)
.++.-|.+.++.++|..++..|-=........ ++.+.+.+..--++.+..++...- .=..|....-......|..
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg-sF~ap~rpl~~~~~~ey~d 491 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG-SFYAPTRPLSDATVLEYRD 491 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh-hccCCCcCccHHHHHHHHH
Confidence 34666777777777777777662111111111 344445555444444444444432 2223333333333444433
Q ss_pred CCCHHHHHHHHHHHHh
Q 025612 141 NKQIAMAEELFCELKK 156 (250)
Q Consensus 141 ~~~~~~A~~~~~~m~~ 156 (250)
.=.+-|.++|..|..
T Consensus 492 -~V~~~aRRfFhhLLR 506 (545)
T PF11768_consen 492 -PVSDLARRFFHHLLR 506 (545)
T ss_pred -HHHHHHHHHHHHHHH
Confidence 112345555555543
No 424
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=42.12 E-value=2.4e+02 Score=24.80 Aligned_cols=153 Identities=9% Similarity=-0.003 Sum_probs=74.4
Q ss_pred cCChhHHHHHHHHHHHhcCcccHH-----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHH
Q 025612 73 AKSSSKLEEGFQSRICRLLKADLL-----DTLTELRRQNELDLALKVFNFVRKEVWYKPD-LSLYSDMILMLGKNKQIAM 146 (250)
Q Consensus 73 ~~~~~~a~~l~~~m~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~~~y~~li~~~~~~~~~~~ 146 (250)
.|+.+.|.+-|+.|..- |... -|.-.--+.|..+.|.+.-+...+ .-|. .-.+.+++...|..|+++.
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~---~Ap~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAE---KAPQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHh---hccCCchHHHHHHHHHHhcCChHH
Confidence 36666666666666421 1111 122222355666666655555432 1222 3345677777777888888
Q ss_pred HHHHHHHHHhC-CCCCCHHH--HHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHH
Q 025612 147 AEELFCELKKE-GLDPDTRV--YTEMIGVYLQ---VGMIDKAMETYETMKASGCTPHKLT-FTILIRNLENAGEEELVAA 219 (250)
Q Consensus 147 A~~~~~~m~~~-g~~p~~~t--y~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~t-y~~li~~~~~~g~~~~a~~ 219 (250)
|+++++.-.+. -+.+|..- -..|+.+-.. .-+...|.+.-.+-.+ +.||.+. -..--+++.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhh
Confidence 88777765443 33343321 2222221111 1123333333222222 3344322 1223356667777777777
Q ss_pred HHHHHHhccCCchH
Q 025612 220 VRRDCIQYVEFPER 233 (250)
Q Consensus 220 ~~~~m~~~g~~pd~ 233 (250)
+++.+=+..-.|+.
T Consensus 285 ilE~aWK~ePHP~i 298 (531)
T COG3898 285 ILETAWKAEPHPDI 298 (531)
T ss_pred HHHHHHhcCCChHH
Confidence 77766665555553
No 425
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.42 E-value=2.9e+02 Score=27.00 Aligned_cols=112 Identities=13% Similarity=0.058 Sum_probs=64.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-CC---HHHHHHHHHHHHcCCCH--HHHHHHHHHHHhCCCCCCH-------
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYK-PD---LSLYSDMILMLGKNKQI--AMAEELFCELKKEGLDPDT------- 163 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~-~~---~~~y~~li~~~~~~~~~--~~A~~~~~~m~~~g~~p~~------- 163 (250)
.|+..|...|..++|.+++.+... +.. -| ..-+--+|..+.+.+.. +-..+.-+......-.-..
T Consensus 509 ~Li~LY~~kg~h~~AL~ll~~l~d--~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 509 ELIELYATKGMHEKALQLLRDLVD--EDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHhccchHHHHHHHHHHhc--cccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 478888888888888888888753 111 11 12233455655555544 3333333333322111000
Q ss_pred ----HHHH-HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 025612 164 ----RVYT-EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210 (250)
Q Consensus 164 ----~ty~-~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~ 210 (250)
.+.+ --+-.|......+-+..+++.+....-.++..-.+.++..|.+
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1111 1234566677788888888888776666777778888888875
No 426
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=41.22 E-value=1e+02 Score=23.46 Aligned_cols=45 Identities=13% Similarity=0.157 Sum_probs=36.1
Q ss_pred HHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 025612 184 ETYETMKA-SGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 184 ~~~~~m~~-~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g 228 (250)
++++.+.+ .|+.|...++.-++..+++.-..+.+.++|+.+...|
T Consensus 152 ~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG 197 (199)
T smart00164 152 DLYKHLKDKLGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAEG 197 (199)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Confidence 45666764 7888888888888888888778888888888887666
No 427
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=41.14 E-value=9.9 Score=22.84 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 025612 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175 (250)
Q Consensus 142 ~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~ 175 (250)
|-.++...+|..|..+...|.+..||-.+.=|..
T Consensus 6 gy~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~~ 39 (55)
T PF07443_consen 6 GYHEELIAVFKQMPSRNYDPKTRKWNFSLEDYST 39 (55)
T ss_pred cCCHHHHHHHHcCcccccCccceeeeeeHHHHHH
Confidence 4456777778888777777777777666654443
No 428
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.00 E-value=2.8e+02 Score=25.17 Aligned_cols=87 Identities=9% Similarity=0.017 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC------------CHHHHHHHHHHHHh
Q 025612 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP------------DTRVYTEMIGVYLQ 175 (250)
Q Consensus 108 ~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p------------~~~ty~~li~~~~~ 175 (250)
.++..+.+....+..|+..+......++... .|++..|...++.+...+-.. .......++.++ .
T Consensus 177 ~~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~ 253 (504)
T PRK14963 177 EEEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-A 253 (504)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-H
Confidence 3455556655545578877777777666555 488888888888865543111 222244455555 5
Q ss_pred cCChHHHHHHHHHHHHCCCCCC
Q 025612 176 VGMIDKAMETYETMKASGCTPH 197 (250)
Q Consensus 176 ~g~~~~a~~~~~~m~~~g~~p~ 197 (250)
.++.++|+.+++++...|..|.
T Consensus 254 ~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 254 QGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred cCCHHHHHHHHHHHHHcCCCHH
Confidence 5899999999999999997664
No 429
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.92 E-value=2.7e+02 Score=25.07 Aligned_cols=86 Identities=9% Similarity=0.078 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-C------------CCHHHHHHHHHHHHh
Q 025612 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGL-D------------PDTRVYTEMIGVYLQ 175 (250)
Q Consensus 109 ~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~-~------------p~~~ty~~li~~~~~ 175 (250)
++....+....+..|+..+......+... ..|++..|...++.....|- . .+....-.|+.+. .
T Consensus 181 ~el~~~L~~i~k~egi~id~~al~~La~~--s~G~lr~al~~Ldkl~~~~~~~It~~~V~~~lg~~~~~~vf~Li~ai-~ 257 (486)
T PRK14953 181 EQIKEYLKRICNEEKIEYEEKALDLLAQA--SEGGMRDAASLLDQASTYGEGKVTIKVVEEFLGIVSQESVRKFLNLL-L 257 (486)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCCCHHHHHHHHHHH-H
Confidence 33344444433445666666555555543 33677777777766543321 0 0111222333332 3
Q ss_pred cCChHHHHHHHHHHHHCCCCCC
Q 025612 176 VGMIDKAMETYETMKASGCTPH 197 (250)
Q Consensus 176 ~g~~~~a~~~~~~m~~~g~~p~ 197 (250)
.|+.++|..+++++...|..|.
T Consensus 258 ~~d~~~al~~l~~L~~~g~~~~ 279 (486)
T PRK14953 258 ESDVDEAIKFLRTLEEKGYNLN 279 (486)
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 4677777777777776665543
No 430
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=40.72 E-value=1.4e+02 Score=21.77 Aligned_cols=31 Identities=23% Similarity=0.202 Sum_probs=13.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 025612 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLT 200 (250)
Q Consensus 170 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 200 (250)
+..+...++.-.|.++|+++++.+-..+..|
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 27 LELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 3333444444445555555544443333333
No 431
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=40.59 E-value=1.8e+02 Score=23.21 Aligned_cols=60 Identities=13% Similarity=0.081 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHh------cCCHHHHHHHHHHH
Q 025612 165 VYTEMIGVYLQVGMIDKAMETYETMKAS----GCTPHKLTFTILIRNLEN------AGEEELVAAVRRDC 224 (250)
Q Consensus 165 ty~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~ty~~li~~~~~------~g~~~~a~~~~~~m 224 (250)
.|...++++...|....+.++.+..... .++||...=|.|++.=-+ ++.-..|.+++..+
T Consensus 66 ~YG~t~aGL~~~~~~~d~deY~~~V~~~LPlq~LkPD~~LRnlLL~l~~r~k~~FTNa~k~HA~r~Lk~L 135 (244)
T KOG3109|consen 66 EYGLTMAGLKAVGYIFDADEYHRFVHGRLPLQDLKPDPVLRNLLLSLKKRRKWIFTNAYKVHAIRILKKL 135 (244)
T ss_pred HHhHHHHHHHHhcccCCHHHHHHHhhccCcHhhcCCCHHHHHHHHhCccccEEEecCCcHHHHHHHHHHh
Confidence 4777788888877777777766655432 478888877777754433 45566676666554
No 432
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=40.19 E-value=1.1e+02 Score=20.37 Aligned_cols=67 Identities=13% Similarity=0.124 Sum_probs=34.9
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 025612 147 AEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAA 219 (250)
Q Consensus 147 A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 219 (250)
+.++++.+.++|+- +..-.+.+-.+=...|+.+.|.++...+. .| |+ -|..+++++-..|.-+.|.+
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~~--aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK--EG--WFSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--Cc--HHHHHHHHHHHcCchhhhhc
Confidence 44556666666532 22223333332234566666666666666 33 32 45566666666666555543
No 433
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=40.17 E-value=2.2e+02 Score=23.87 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=38.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC---CCC----------CHHHHHHHHHHHHhcCC
Q 025612 112 LKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG---LDP----------DTRVYTEMIGVYLQVGM 178 (250)
Q Consensus 112 ~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g---~~p----------~~~ty~~li~~~~~~g~ 178 (250)
.++.....++.|+..+......++... .|++..|...++.+...+ +.. .....-.++.+.. .|+
T Consensus 182 ~~~l~~~~~~~g~~i~~~a~~~l~~~~--~g~~~~a~~~lekl~~~~~~~it~~~v~~~~~~~~~~~i~~l~~ai~-~~~ 258 (355)
T TIGR02397 182 VERLKKILDKEGIKIEDEALELIARAA--DGSLRDALSLLDQLISFGNGNITYEDVNELLGLVDDEKLIELLEAIL-NKD 258 (355)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHc--CCChHHHHHHHHHHHhhcCCCCCHHHHHHHhCCCCHHHHHHHHHHHH-cCC
Confidence 333333333455555554444444432 355666666655544321 110 0112223344433 366
Q ss_pred hHHHHHHHHHHHHCCCCC
Q 025612 179 IDKAMETYETMKASGCTP 196 (250)
Q Consensus 179 ~~~a~~~~~~m~~~g~~p 196 (250)
..+|.++++++.+.|..|
T Consensus 259 ~~~a~~~~~~l~~~~~~~ 276 (355)
T TIGR02397 259 TAEALKILDEILESGVDP 276 (355)
T ss_pred HHHHHHHHHHHHHcCCCH
Confidence 666666666666665544
No 434
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=40.16 E-value=54 Score=23.37 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=17.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHH
Q 025612 176 VGMIDKAMETYETMKASGCTPHKLT 200 (250)
Q Consensus 176 ~g~~~~a~~~~~~m~~~g~~p~~~t 200 (250)
.|+...|.++++.++.+|+.|-...
T Consensus 10 ~G~~~ra~riL~~L~~Eg~ep~~lL 34 (125)
T PF14840_consen 10 AGDAKRALRILQGLQAEGVEPPILL 34 (125)
T ss_dssp TT-HHHHHHHHHHHHHTT--HHHHH
T ss_pred CCCHHHHHHHHHHHHHCCccHHHHH
Confidence 5889999999999999998875443
No 435
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=40.05 E-value=1.4e+02 Score=29.39 Aligned_cols=56 Identities=16% Similarity=0.293 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 025612 141 NKQIAMAEELFCELKKEGLDPDTRV-YTEMIGVYLQVGMIDKAMETYETMKASGCTP 196 (250)
Q Consensus 141 ~~~~~~A~~~~~~m~~~g~~p~~~t-y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 196 (250)
...+.+++++|..|...|+.+.... |-..-..|.+.+.+.+|..+|+.=.+...+|
T Consensus 91 ~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP 147 (974)
T KOG1166|consen 91 REELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEP 147 (974)
T ss_pred HHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 3445555555555555555444322 2333334444455555555555544444444
No 436
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=39.87 E-value=1.1e+02 Score=23.26 Aligned_cols=83 Identities=18% Similarity=0.244 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHHhCC---CCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCh
Q 025612 107 ELDLALKVFNFVRKEVW---YKPDL---SLYSDMILMLGKNKQIAMAEELFCELKK-EGLDPDTRVYTEMIGVYLQVGMI 179 (250)
Q Consensus 107 ~~~~a~~~~~~m~~~~g---~~~~~---~~y~~li~~~~~~~~~~~A~~~~~~m~~-~g~~p~~~ty~~li~~~~~~g~~ 179 (250)
+-++|..+|..+.+... +.++. ..+-.++..+.+..+ -++++.+.+ .|+.|...++.-++..+.+.=..
T Consensus 108 ~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~----p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~ 183 (199)
T smart00164 108 DEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEYD----PDLYKHLKDKLGIDPSLYALRWFLTLFARELPL 183 (199)
T ss_pred CHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHC----HHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCH
Confidence 46677777777654222 22221 122222222232222 346677775 79999999999999999998899
Q ss_pred HHHHHHHHHHHHCC
Q 025612 180 DKAMETYETMKASG 193 (250)
Q Consensus 180 ~~a~~~~~~m~~~g 193 (250)
+.+.++|+.+...|
T Consensus 184 ~~~~riwD~~l~eG 197 (199)
T smart00164 184 EIVLRIWDVLFAEG 197 (199)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998777
No 437
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=39.61 E-value=2e+02 Score=27.23 Aligned_cols=67 Identities=24% Similarity=0.317 Sum_probs=46.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCC----hHHHHHHHHHHHH----CCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHH
Q 025612 158 GLDPDTRVYTEMIGVYLQVGM----IDKAMETYETMKA----SGCTPHKLT---FTILIRNLENAGEEELVAAVRRDC 224 (250)
Q Consensus 158 g~~p~~~ty~~li~~~~~~g~----~~~a~~~~~~m~~----~g~~p~~~t---y~~li~~~~~~g~~~~a~~~~~~m 224 (250)
|.+.|...|..|+.++....+ ++++.++++-++. .||.+..+. -..+++.|...|+.+........+
T Consensus 212 gyplN~~LYe~LL~~~FD~~de~~vidE~dEvlellK~tW~~LGIt~~lHn~cf~WVlF~qyv~tge~~LL~~a~~~L 289 (677)
T PF05664_consen 212 GYPLNVRLYEKLLFSVFDILDEGQVIDEVDEVLELLKKTWSILGITQTLHNVCFAWVLFRQYVATGEPDLLKAAIQQL 289 (677)
T ss_pred CCCccHHHHHHHHHHHhcccccchHHhhHHHHHHHHHHHhHHhCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 788899999999999887433 5777777777765 388764422 345678888888766544444443
No 438
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=39.36 E-value=2.2e+02 Score=23.61 Aligned_cols=85 Identities=9% Similarity=0.013 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHHhc
Q 025612 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD-------------TRVYTEMIGVYLQV 176 (250)
Q Consensus 110 ~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-------------~~ty~~li~~~~~~ 176 (250)
+...++....+..|+..+......++... .|++..+...++.....+-..+ ...-..++.+. ..
T Consensus 188 ~~~~~l~~~~~~~~~~~~~~al~~l~~~~--~gdlr~l~~~l~~~~~~~~~It~~~v~~~~~~~~~~~~i~~l~~ai-~~ 264 (337)
T PRK12402 188 ELVDVLESIAEAEGVDYDDDGLELIAYYA--GGDLRKAILTLQTAALAAGEITMEAAYEALGDVGTDEVIESLLDAA-EA 264 (337)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCCHHHHHHHHHHH-Hc
Confidence 44455555444566666666666666554 5677776666655432211111 11222333332 34
Q ss_pred CChHHHHHHHHHHH-HCCCCCC
Q 025612 177 GMIDKAMETYETMK-ASGCTPH 197 (250)
Q Consensus 177 g~~~~a~~~~~~m~-~~g~~p~ 197 (250)
|+..+|..++.++. +.|..|.
T Consensus 265 ~~~~~a~~~l~~l~~~~g~~~~ 286 (337)
T PRK12402 265 GDFTDARKTLDDLLIDEGLSGG 286 (337)
T ss_pred CCHHHHHHHHHHHHHHcCCCHH
Confidence 66777777777765 5566554
No 439
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=39.12 E-value=1.4e+02 Score=21.20 Aligned_cols=43 Identities=14% Similarity=0.158 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 025612 181 KAMETYETMKASGCTPHK-LTFTILIRNLENAGEEELVAAVRRD 223 (250)
Q Consensus 181 ~a~~~~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~a~~~~~~ 223 (250)
++.++|..|...|+--.. .-|...-..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 666666666665543322 3355555555566666666666653
No 440
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=38.88 E-value=2.6e+02 Score=24.19 Aligned_cols=173 Identities=12% Similarity=0.021 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcCcccHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHH
Q 025612 64 IQAVHAMKLAKSSSKLEEGFQSRICRLLKADLL----DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMI-LML 138 (250)
Q Consensus 64 ~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li-~~~ 138 (250)
+.+-+.+...|++..|+..|...+ ...|+.. .--..|...|+-..|..=+....+ ++||-..-..-= ..+
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAv--e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAV--EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH--cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHhchhh
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHH----------------HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 025612 139 GKNKQIAMAEELFCELKKEGLDPDTRV----------------YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFT 202 (250)
Q Consensus 139 ~~~~~~~~A~~~~~~m~~~g~~p~~~t----------------y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~ 202 (250)
.+.|.++.|..=|+..... .|+.-+ --..+..+.-.|+...|......+.+- ...|...|.
T Consensus 117 lK~Gele~A~~DF~~vl~~--~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~ 193 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQH--EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQ 193 (504)
T ss_pred hhcccHHHHHHHHHHHHhc--CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHH
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCCchHHHHHHHHhhhc
Q 025612 203 ILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVYQKHRK 244 (250)
Q Consensus 203 ~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~~~~~~~ 244 (250)
.--++|...|++..|.-=++...+..-......|++..-..+
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~ 235 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT 235 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHh
No 441
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.53 E-value=3.4e+02 Score=25.40 Aligned_cols=102 Identities=14% Similarity=0.013 Sum_probs=69.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHhcCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 025612 68 HAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMA 147 (250)
Q Consensus 68 ~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A 147 (250)
....+.|+.+.|.++-.+. .-.....+|-++..+.+++..|.+.|...+ -|..|+-.+...|+-+..
T Consensus 645 elal~lgrl~iA~~la~e~---~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~----------d~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA---NSEVKWRQLGDAALSAGELPLASECFLRAR----------DLGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh---cchHHHHHHHHHHhhcccchhHHHHHHhhc----------chhhhhhhhhhcCChhHH
Confidence 3344556666666655443 222233368888889999999999988663 278888888888887766
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 025612 148 EELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYET 188 (250)
Q Consensus 148 ~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~ 188 (250)
..+=..-.+.|. .|.-.-+|...|+++++.+++..
T Consensus 712 ~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 712 AVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 666666555542 34445567788999999988754
No 442
>COG5210 GTPase-activating protein [General function prediction only]
Probab=37.90 E-value=1.1e+02 Score=27.56 Aligned_cols=45 Identities=11% Similarity=0.033 Sum_probs=20.3
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 025612 185 TYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVE 229 (250)
Q Consensus 185 ~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~ 229 (250)
++..|...|+.+...++..++..+.+.-..+.|.++|+.+--.|+
T Consensus 364 l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~ 408 (496)
T COG5210 364 LYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGS 408 (496)
T ss_pred HHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 344444444444444444444444444444444444444443333
No 443
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=37.32 E-value=61 Score=28.46 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=43.4
Q ss_pred CHHHHHHHHHH--HHcCCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 025612 127 DLSLYSDMILM--LGKNKQIAMAEELFCELKKEGLD---PDTRVYTEMIGVYLQVGMIDKAMETYE 187 (250)
Q Consensus 127 ~~~~y~~li~~--~~~~~~~~~A~~~~~~m~~~g~~---p~~~ty~~li~~~~~~g~~~~a~~~~~ 187 (250)
+...|..-+.+ +|+.|+......+|+...+-|.. .=+..|+.|-++|...+++++|+++..
T Consensus 14 ~~SCleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 14 DRSCLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred hhHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 44456555554 78999999999999988887632 223447777778888888888887653
No 444
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=37.29 E-value=1.1e+02 Score=19.61 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 025612 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141 (250)
Q Consensus 107 ~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~ 141 (250)
+.+.|..++..++ ..-+.++..||++-+.+.++
T Consensus 12 DtEmA~~mL~DLr--~dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLR--DDEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhc--chhhcChHHHHHHHHHHHHc
Confidence 4567777777775 23345677888887777664
No 445
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=37.06 E-value=1.6e+02 Score=21.39 Aligned_cols=154 Identities=16% Similarity=0.109 Sum_probs=87.9
Q ss_pred HHhcCChhHHHHHHHHHHHhcCcccHH-H-HHH-HHHHcCCHHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHcCCCH
Q 025612 70 MKLAKSSSKLEEGFQSRICRLLKADLL-D-TLT-ELRRQNELDLALKVFNFVRKEVWY--KPDLSLYSDMILMLGKNKQI 144 (250)
Q Consensus 70 ~~~~~~~~~a~~l~~~m~~~~~~~~~~-~-ll~-~~~~~~~~~~a~~~~~~m~~~~g~--~~~~~~y~~li~~~~~~~~~ 144 (250)
....++...+...+.........+... . ... .+...|+++.|...|..... ... ......+......+...++.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (291)
T COG0457 105 LEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRY 183 (291)
T ss_pred HHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCH
Confidence 334455556666666555433332121 1 222 56777778888777777642 211 12334444444446667777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 025612 145 AMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH-KLTFTILIRNLENAGEEELVAAVRRD 223 (250)
Q Consensus 145 ~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~~~~~ 223 (250)
+.+...+.+............+..+-..+...++.+.+...+....... |+ ...+..+...+...+..+.+...+..
T Consensus 184 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (291)
T COG0457 184 EEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEK 261 (291)
T ss_pred HHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHH
Confidence 7777777776654211135667777777777777777777777776642 33 33444444444455667777766666
Q ss_pred HHh
Q 025612 224 CIQ 226 (250)
Q Consensus 224 m~~ 226 (250)
..+
T Consensus 262 ~~~ 264 (291)
T COG0457 262 ALE 264 (291)
T ss_pred HHH
Confidence 544
No 446
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.05 E-value=3.1e+02 Score=24.61 Aligned_cols=119 Identities=13% Similarity=0.031 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-C--CCC----------CHHHHHHHHHHHHh
Q 025612 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE-G--LDP----------DTRVYTEMIGVYLQ 175 (250)
Q Consensus 109 ~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~-g--~~p----------~~~ty~~li~~~~~ 175 (250)
++....+....+..|+..+......++... .|+...|...++.+... + +.. .......++.+ .+
T Consensus 179 ~el~~~L~~i~~~egi~i~~eal~~Ia~~s--~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~~~~~~~i~~li~s-i~ 255 (472)
T PRK14962 179 ELIIKRLQEVAEAEGIEIDREALSFIAKRA--SGGLRDALTMLEQVWKFSEGKITLETVHEALGLIPIEVVRDYINA-IF 255 (472)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHH-HH
Confidence 344444444434456666666666655532 46777777777665431 1 111 11223344444 35
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhccCC
Q 025612 176 VGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEE------LVAAVRRDCIQYVEF 230 (250)
Q Consensus 176 ~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~------~a~~~~~~m~~~g~~ 230 (250)
.++.++|..++.+|...|..|....-..+..++-.-|.-+ .+..+++...+-|.+
T Consensus 256 ~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~~i~~~ 316 (472)
T PRK14962 256 NGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNILREIKFA 316 (472)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhCCc
Confidence 6889999999999988888877655444444444334222 334444444455555
No 447
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.51 E-value=3.5e+02 Score=25.02 Aligned_cols=26 Identities=4% Similarity=-0.103 Sum_probs=14.9
Q ss_pred CCHHHHHHHHHHHHhccCCchHHHHH
Q 025612 212 GEEELVAAVRRDCIQYVEFPERFLEE 237 (250)
Q Consensus 212 g~~~~a~~~~~~m~~~g~~pd~~~~~ 237 (250)
|+.+.+.++++.+.+.|..|-.++..
T Consensus 260 ~d~~~al~~l~~L~~~g~~~~~il~~ 285 (585)
T PRK14950 260 KDLKAALRTLNAVAADGADLRQFTRD 285 (585)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 55666666666666666555544443
No 448
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=36.14 E-value=2.6e+02 Score=23.69 Aligned_cols=85 Identities=18% Similarity=0.308 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCCC---HHHHHHHH
Q 025612 62 EAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELR---RQNELDLALKVFNFVRKEVWYKPD---LSLYSDMI 135 (250)
Q Consensus 62 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~ll~~~~---~~~~~~~a~~~~~~m~~~~g~~~~---~~~y~~li 135 (250)
+.+.++.-|++..+..+.+..+.+ +.++..+...-++.++ ..|+|+..++....++ -|+ ...|..++
T Consensus 9 dVIrli~QflKE~~L~rtl~tLQe--Et~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsLK-----LP~kkL~dLYEqiv 81 (508)
T KOG0275|consen 9 DVIRLIEQFLKENSLHRTLQTLQE--ETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSLK-----LPDKKLIDLYEQIV 81 (508)
T ss_pred hHHHHHHHHHhhhhHHHHHHHHHH--hhccceeechhHHHHHHhcccCchHHHHHHHHhcc-----CchhHHHHHHHHHH
Confidence 677888889999988888887775 3344444443334443 6799999888888773 244 55677777
Q ss_pred HHHHcCCCHHHHHHHHHH
Q 025612 136 LMLGKNKQIAMAEELFCE 153 (250)
Q Consensus 136 ~~~~~~~~~~~A~~~~~~ 153 (250)
--+...+.+..|..++.+
T Consensus 82 lEliELREL~tAR~~lRQ 99 (508)
T KOG0275|consen 82 LELIELRELGTARSLLRQ 99 (508)
T ss_pred HHHHHHHhhhHHHHHHhc
Confidence 777888888888888876
No 449
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=35.86 E-value=2.7e+02 Score=23.58 Aligned_cols=50 Identities=8% Similarity=-0.055 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 025612 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162 (250)
Q Consensus 111 a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 162 (250)
..+-++.+-...|+.-|...|..+++.. .|++-.|+-+++..-..|-..+
T Consensus 193 iv~rL~~Ia~~E~v~~d~~al~~I~~~S--~GdLR~Ait~Lqsls~~gk~It 242 (346)
T KOG0989|consen 193 IVDRLEKIASKEGVDIDDDALKLIAKIS--DGDLRRAITTLQSLSLLGKRIT 242 (346)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHhhccCcccc
Confidence 3444555555678888888888777654 4888899988888766554444
No 450
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=35.56 E-value=3.2e+02 Score=24.28 Aligned_cols=128 Identities=11% Similarity=-0.024 Sum_probs=85.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHH---HHhCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh----CC-CCCCHHHHHH
Q 025612 98 TLTELRRQNELDLALKVFNFV---RKEVWYK-PDLSLYSDMILMLGKNKQIAMAEELFCELKK----EG-LDPDTRVYTE 168 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m---~~~~g~~-~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~----~g-~~p~~~ty~~ 168 (250)
|=+.|.-.|+++.|...++.= .++.|=. .-...|..|-+++.-.|+++.|.+.|..-.. -| -..-..+.-+
T Consensus 201 LGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYS 280 (639)
T KOG1130|consen 201 LGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYS 280 (639)
T ss_pred cCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 333444457888888766542 1223321 1246688888999999999999988876432 11 2233455567
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025612 169 MIGVYLQVGMIDKAMETYETMKA----S-GCTPHKLTFTILIRNLENAGEEELVAAVRRDCI 225 (250)
Q Consensus 169 li~~~~~~g~~~~a~~~~~~m~~----~-g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~ 225 (250)
|-++|.-..++++|+.++++=.. . ...--...|.+|-.+|...|..++|..+...-.
T Consensus 281 LgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 281 LGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 77888888889999998876321 1 122345788899999999999998877665543
No 451
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.24 E-value=3.5e+02 Score=26.50 Aligned_cols=113 Identities=15% Similarity=0.128 Sum_probs=71.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhc--Cc---ccHH-HHHHHHHHcCCH--HHHHHHHHHHHHhCCCCCCHHHHH--
Q 025612 63 AIQAVHAMKLAKSSSKLEEGFQSRICRL--LK---ADLL-DTLTELRRQNEL--DLALKVFNFVRKEVWYKPDLSLYS-- 132 (250)
Q Consensus 63 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~--~~---~~~~-~ll~~~~~~~~~--~~a~~~~~~m~~~~g~~~~~~~y~-- 132 (250)
.-.++..|...|+.++|+++|.+..+.- .. ++.. .+++-+-+.+.. +-.++.-++..+ .........++
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~-~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLN-KNPEAGIQIFTSE 585 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhc-cCchhheeeeecc
Confidence 3446888999999999999999997643 11 1111 344444444443 555555555532 11111111111
Q ss_pred ----------HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 025612 133 ----------DMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176 (250)
Q Consensus 133 ----------~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 176 (250)
..+-.|......+-+...++.+....-.++..-.|.++.-|++.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 12344666777888899999988877778888899999888863
No 452
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.99 E-value=2.9e+02 Score=23.56 Aligned_cols=72 Identities=7% Similarity=-0.023 Sum_probs=36.5
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC---CC-----------CCCHHHHHHHHHHHHhcCChHHHHHHH
Q 025612 121 EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE---GL-----------DPDTRVYTEMIGVYLQVGMIDKAMETY 186 (250)
Q Consensus 121 ~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~---g~-----------~p~~~ty~~li~~~~~~g~~~~a~~~~ 186 (250)
..|+..+......++... .|+...+...++.+... ++ .++...+. ++++. ..|+..++..++
T Consensus 182 ~~g~~i~~~al~~l~~~~--~gdlr~~~~~lekl~~y~~~~it~~~v~~~~~~~~~~~if~-l~~ai-~~~~~~~a~~~~ 257 (367)
T PRK14970 182 KEGIKFEDDALHIIAQKA--DGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDTYIN-VTDLI-LENKIPELLLAF 257 (367)
T ss_pred HcCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCCHHHHHH-HHHHH-HcCCHHHHHHHH
Confidence 456655555555555532 35666666666665421 11 11111122 33333 336677777777
Q ss_pred HHHHHCCCCC
Q 025612 187 ETMKASGCTP 196 (250)
Q Consensus 187 ~~m~~~g~~p 196 (250)
+++...|..|
T Consensus 258 ~~l~~~~~~~ 267 (367)
T PRK14970 258 NEILRKGFDG 267 (367)
T ss_pred HHHHHcCCCH
Confidence 7766666555
No 453
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=34.81 E-value=1.4e+02 Score=19.79 Aligned_cols=16 Identities=13% Similarity=-0.049 Sum_probs=8.1
Q ss_pred HcCCCHHHHHHHHHHH
Q 025612 139 GKNKQIAMAEELFCEL 154 (250)
Q Consensus 139 ~~~~~~~~A~~~~~~m 154 (250)
...|++++|...+++-
T Consensus 52 ~~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 52 RRFGHYEEALQALEEA 67 (94)
T ss_pred HHhCCHHHHHHHHHHH
Confidence 3445555555555543
No 454
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=34.72 E-value=3e+02 Score=23.64 Aligned_cols=78 Identities=15% Similarity=0.307 Sum_probs=54.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC--CCCCHHHH--HHHHHHHHcCCCHHHHHHHHHHHHh-----CCCCCCHHH-HH
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVW--YKPDLSLY--SDMILMLGKNKQIAMAEELFCELKK-----EGLDPDTRV-YT 167 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g--~~~~~~~y--~~li~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~t-y~ 167 (250)
++...-+.++.++|.++.+++.+.-. -.|+.+.| +...+.+...|+..++.+++++.++ .|++|+..+ |.
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 55555567789999999999864211 24566666 4556777789999999999998877 688886544 55
Q ss_pred HHHHHHHh
Q 025612 168 EMIGVYLQ 175 (250)
Q Consensus 168 ~li~~~~~ 175 (250)
.+=.-|.+
T Consensus 161 ~lssqYyk 168 (380)
T KOG2908|consen 161 SLSSQYYK 168 (380)
T ss_pred HHHHHHHH
Confidence 55544444
No 455
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=34.50 E-value=2.4e+02 Score=24.46 Aligned_cols=56 Identities=18% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHh--cCChHHHHHHHHHHHH
Q 025612 135 ILMLGKNKQIAMAEELFCELKKEGLDPDTR--VYTEMIGVYLQ--VGMIDKAMETYETMKA 191 (250)
Q Consensus 135 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--ty~~li~~~~~--~g~~~~a~~~~~~m~~ 191 (250)
...+-+.+++..|.++|+++... +.++.. .|..+..+|.. .-++++|.+.++....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
No 456
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=34.23 E-value=1e+02 Score=22.56 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=19.1
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 025612 175 QVGMIDKAMETYETMKASGCTPHKLTFTILIR 206 (250)
Q Consensus 175 ~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~ 206 (250)
+.|-+.+...++++|.+.|+.-+..+|+-+++
T Consensus 121 ~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~ 152 (157)
T COG2405 121 SKGLISKDKPILDELIEKGFRISRSILEEILR 152 (157)
T ss_pred HcCcccchHHHHHHHHHhcCcccHHHHHHHHH
Confidence 34556666666666666666666666655544
No 457
>PLN03025 replication factor C subunit; Provisional
Probab=34.21 E-value=2.8e+02 Score=23.17 Aligned_cols=96 Identities=14% Similarity=0.116 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-C-C----------CCCHHHHHHHHHHHHhc
Q 025612 109 DLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE-G-L----------DPDTRVYTEMIGVYLQV 176 (250)
Q Consensus 109 ~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~-g-~----------~p~~~ty~~li~~~~~~ 176 (250)
++....+....+..|+..+......++..+ .|++..|...++..... + + .+....-..++... ..
T Consensus 161 ~~l~~~L~~i~~~egi~i~~~~l~~i~~~~--~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~-~~ 237 (319)
T PLN03025 161 QEILGRLMKVVEAEKVPYVPEGLEAIIFTA--DGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNC-LK 237 (319)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHH-Hc
Confidence 455556666555678888888888887654 48888888888754321 1 1 12223344455554 45
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 025612 177 GMIDKAMETYETMKASGCTPHKLTFTILIRNL 208 (250)
Q Consensus 177 g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~ 208 (250)
+++++|...+.+|...|+.|..... .+....
T Consensus 238 ~~~~~a~~~l~~ll~~g~~~~~Il~-~l~~~~ 268 (319)
T PLN03025 238 GKFDDACDGLKQLYDLGYSPTDIIT-TLFRVV 268 (319)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHH-HHHHHH
Confidence 8999999999999999998875443 334433
No 458
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.14 E-value=3.9e+02 Score=24.93 Aligned_cols=81 Identities=14% Similarity=0.112 Sum_probs=44.2
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-C--C----------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 025612 156 KEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS-G--C----------TPHKLTFTILIRNLENAGEEELVAAVRR 222 (250)
Q Consensus 156 ~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~-g--~----------~p~~~ty~~li~~~~~~g~~~~a~~~~~ 222 (250)
+.|+..+......++... .|++..|...++..... | + .++...+-.|+++.. .++...|..+++
T Consensus 195 ~egi~i~~~al~~La~~s--~gdlr~al~~Lekl~~y~~~~It~~~V~~~l~~~~~~~iF~L~dai~-~~~~~~al~ll~ 271 (614)
T PRK14971 195 KEGITAEPEALNVIAQKA--DGGMRDALSIFDQVVSFTGGNITYKSVIENLNILDYDYYFRLTDALL-AGKVSDSLLLFD 271 (614)
T ss_pred HcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCccHHHHHHHhCCCCHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 346666655554444332 46677776666554221 1 0 122223333444443 357777888888
Q ss_pred HHHhccCCchHHHHHHH
Q 025612 223 DCIQYVEFPERFLEEVY 239 (250)
Q Consensus 223 ~m~~~g~~pd~~~~~~~ 239 (250)
++...|..|..++..+.
T Consensus 272 ~Ll~~g~~~~~iL~~L~ 288 (614)
T PRK14971 272 EILNKGFDGSHFITGLA 288 (614)
T ss_pred HHHHcCCCHHHHHHHHH
Confidence 88877877776655543
No 459
>PF14518 Haem_oxygenas_2: Iron-containing redox enzyme; PDB: 3BJD_B.
Probab=33.01 E-value=1.5e+02 Score=19.88 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhcC
Q 025612 164 RVYTEMIGVYLQVG 177 (250)
Q Consensus 164 ~ty~~li~~~~~~g 177 (250)
..|..++.++-+.|
T Consensus 79 ~~~~~~~~~l~r~g 92 (106)
T PF14518_consen 79 QIYRRLIKGLRRLG 92 (106)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC
Confidence 33555555555555
No 460
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=32.94 E-value=1.5e+02 Score=19.78 Aligned_cols=59 Identities=19% Similarity=0.090 Sum_probs=43.7
Q ss_pred CCCcHHHHHH-HHHHHhcCChhHHHHHHHHHHH-hcCcccHHHHHHHHHHcCCHHHHHHHH
Q 025612 57 RVLSSEAIQA-VHAMKLAKSSSKLEEGFQSRIC-RLLKADLLDTLTELRRQNELDLALKVF 115 (250)
Q Consensus 57 ~~~~~~~~~l-l~~~~~~~~~~~a~~l~~~m~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~ 115 (250)
+.++...+.- -..|-+.|-.+.|.+.+..-+. .|-...+..|+.++-.++.-.-|++++
T Consensus 28 ral~d~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~eg~~Atv~~Lv~AL~~c~l~~lAe~l~ 88 (90)
T cd08780 28 RALRDPAIDNLAYEYDREGLYEQAYQLLRRFIQSEGKKATLQRLVQALEENGLTSLAEDLL 88 (90)
T ss_pred cccchhHHHHHHhhcccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHccchHHHHHHh
Confidence 3355566654 3467777888899998888754 677777778999999998887777765
No 461
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=32.87 E-value=75 Score=20.06 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=29.1
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 025612 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM 178 (250)
Q Consensus 140 ~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~ 178 (250)
-.++.+.+.+++++....|..|.....+.+.-+..+.|+
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 457778888888888888888888888777777666553
No 462
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=32.54 E-value=5.5e+02 Score=26.10 Aligned_cols=112 Identities=16% Similarity=0.098 Sum_probs=52.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH-----hcCcccHH-----HHHHHHHHcC--CHHHHHHHHHHHHHhCC--------CC
Q 025612 66 AVHAMKLAKSSSKLEEGFQSRIC-----RLLKADLL-----DTLTELRRQN--ELDLALKVFNFVRKEVW--------YK 125 (250)
Q Consensus 66 ll~~~~~~~~~~~a~~l~~~m~~-----~~~~~~~~-----~ll~~~~~~~--~~~~a~~~~~~m~~~~g--------~~ 125 (250)
++.+-....++.+-+-+++++.+ +.+.-|.. .-+.-+.++| .++++..+.++ +| +.
T Consensus 857 l~VAq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~k----h~Ly~~aL~ly~ 932 (1265)
T KOG1920|consen 857 LLVAQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKK----HGLYDEALALYK 932 (1265)
T ss_pred HHHHHHhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHh----cccchhhhheec
Confidence 34444555666666666666541 12222222 2333334444 44544444332 22 35
Q ss_pred CCHHHHHHHHHHHH----cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 025612 126 PDLSLYSDMILMLG----KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMK 190 (250)
Q Consensus 126 ~~~~~y~~li~~~~----~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~ 190 (250)
|+...|..+..+|+ ....+++|--+|+..-+ -.--+.+|-.+|+|.+|+.+-.+|.
T Consensus 933 ~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~ 992 (1265)
T KOG1920|consen 933 PDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLS 992 (1265)
T ss_pred cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhc
Confidence 56666666655554 33445555444443321 1123455555566666655555443
No 463
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=32.49 E-value=1.8e+02 Score=20.82 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=12.2
Q ss_pred hcCChHHHHHHHHHHHHCCCCC
Q 025612 175 QVGMIDKAMETYETMKASGCTP 196 (250)
Q Consensus 175 ~~g~~~~a~~~~~~m~~~g~~p 196 (250)
..|+..++...++++.+.|..|
T Consensus 26 ~~~d~~~~l~~~~~l~~~G~d~ 47 (143)
T PF12169_consen 26 LEGDAAEALELLNELLEQGKDP 47 (143)
T ss_dssp HTT-HHHHHHHHHHHHHCT--H
T ss_pred HcCCHHHHHHHHHHHHHhCCCH
Confidence 4466666666666666666544
No 464
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=32.42 E-value=2e+02 Score=20.90 Aligned_cols=45 Identities=4% Similarity=0.020 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025612 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCI 225 (250)
Q Consensus 181 ~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~ 225 (250)
+..+.+.....-.+.|++.....-+++|-|.+|+-.|.++|+-.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 444555566666677777777777777777777777777777766
No 465
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=32.29 E-value=2.6e+02 Score=23.15 Aligned_cols=63 Identities=16% Similarity=0.198 Sum_probs=30.0
Q ss_pred CCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 025612 122 VWYKPDL-SLYSDMILMLGKNKQIAMAEELFCE-LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYET 188 (250)
Q Consensus 122 ~g~~~~~-~~y~~li~~~~~~~~~~~A~~~~~~-m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~ 188 (250)
.|-.|++ .+|.++...=+. .-+++|...|.. |... +.+...|...|....-.+ ..+|..+|..
T Consensus 23 ~G~vP~iesa~~~~~e~e~~-~A~~~A~~~Y~~~m~~~-~~~P~~~~~eL~~~H~~~--~~~A~~~F~~ 87 (297)
T PF02841_consen 23 SGSVPCIESAWQAVAEAENR-AAVEKAVEHYEEQMEQR-VKLPTETLEELLELHEQC--EKEALEVFMK 87 (297)
T ss_dssp TTS--BHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH---SS-SSHHHHHHHHHHH--HHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hCCCccCHHHHHHHHHHH--HHHHHHHHHH
Confidence 3445553 445555443322 124667777765 4333 233334556665555443 5667777764
No 466
>PF08673 RsbU_N: Phosphoserine phosphatase RsbU, N-terminal domain; InterPro: IPR014787 The phosphoserine phosphatase RsbU acts as a positive regulator of the general stress-response factor of Gram-positive organisms, sigma-B. RsbU dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module. The phosphatase activity of RsbU is stimulated during the stress response by associating with the RsbT kinase. This association leads to the induction of sigmaB activity. The N-terminal domain forms a helix-swapped dimer that is otherwise similar to the KaiA domain dimer. Deletions in the N-terminal domain are deleterious to the activity of RsbU. The C-terminal domain of RsbU is similar to the catalytic domains of PP2C-type phosphatases [].; PDB: 2J6Y_D 2J6Z_A 2J70_A 1W53_A.
Probab=31.89 E-value=1.4e+02 Score=19.35 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhcCC---HHHHHHHHHHHHhccCCchHHH
Q 025612 200 TFTILIRNLENAGE---EELVAAVRRDCIQYVEFPERFL 235 (250)
Q Consensus 200 ty~~li~~~~~~g~---~~~a~~~~~~m~~~g~~pd~~~ 235 (250)
.|..+++.|.+.++ .-.|.++=+++.+.++.|..++
T Consensus 3 ~Y~~lL~~yl~~~~E~~L~~~~~~~r~~i~~~I~PEeIv 41 (77)
T PF08673_consen 3 QYKDLLREYLETQDEQSLYQAQEFGRELIEKDISPEEIV 41 (77)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT--HHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 45566666666655 2245666666666677766543
No 467
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.62 E-value=4.2e+02 Score=24.48 Aligned_cols=81 Identities=10% Similarity=0.095 Sum_probs=43.1
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCH------------HHHHHHHHHHHhcCCHHHHHHHHH
Q 025612 156 KEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS-GCTPHK------------LTFTILIRNLENAGEEELVAAVRR 222 (250)
Q Consensus 156 ~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~------------~ty~~li~~~~~~g~~~~a~~~~~ 222 (250)
+.|+..+......++.. ..|++..|...+++.... |-..+. .....++++. ..++...+..+++
T Consensus 193 ~egi~i~~~al~~la~~--a~G~lr~al~~Ldqliay~g~~It~edV~~llG~~~~~~l~~ll~al-~~~d~~~al~~l~ 269 (576)
T PRK14965 193 QEGISISDAALALVARK--GDGSMRDSLSTLDQVLAFCGDAVGDDDVAELLGVVDRRLLLDISAAV-FGRDTRALLEIVE 269 (576)
T ss_pred HhCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCCCHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence 34666555555444432 236677777777665432 111111 1122333333 3467777777777
Q ss_pred HHHhccCCchHHHHHHH
Q 025612 223 DCIQYVEFPERFLEEVY 239 (250)
Q Consensus 223 ~m~~~g~~pd~~~~~~~ 239 (250)
++...|..|..++..+.
T Consensus 270 ~l~~~G~~~~~~l~~Ll 286 (576)
T PRK14965 270 RVDEFGYNMRQFCQELI 286 (576)
T ss_pred HHHHhCCCHHHHHHHHH
Confidence 77777777765555543
No 468
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=31.40 E-value=1.8e+02 Score=20.15 Aligned_cols=90 Identities=12% Similarity=0.064 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 025612 143 QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222 (250)
Q Consensus 143 ~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~ 222 (250)
..++|.-+-+.+...+-. ....--+=+..+...|++++|..+.+.+ ..||...|-.|-. .+.|--+..+.-+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 456777777776665321 1111112245667789999999887766 4799999877754 47778888888888
Q ss_pred HHHhccCCch-HHHHHHH
Q 025612 223 DCIQYVEFPE-RFLEEVY 239 (250)
Q Consensus 223 ~m~~~g~~pd-~~~~~~~ 239 (250)
.|...|-+-. .|-..++
T Consensus 93 rla~sg~p~lq~Faag~r 110 (115)
T TIGR02508 93 RLAASGDPRLQTFVAGMR 110 (115)
T ss_pred HHHhCCCHHHHHHHHHHH
Confidence 8888887632 4433333
No 469
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=31.37 E-value=2e+02 Score=20.61 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=10.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 025612 97 DTLTELRRQNELDLALKVFNFVR 119 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~ 119 (250)
..++.+....-.-.+.++...+.
T Consensus 23 ~yld~lv~~~~sl~s~EvVn~L~ 45 (126)
T PF10155_consen 23 EYLDVLVSMDMSLHSMEVVNRLT 45 (126)
T ss_pred HHHHHHHcCCCchhHHHHHHHHH
Confidence 34444444444444555555554
No 470
>PF14649 Spatacsin_C: Spatacsin C-terminus
Probab=31.24 E-value=2.6e+02 Score=23.33 Aligned_cols=123 Identities=7% Similarity=0.020 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHH---HHHHcCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 025612 111 ALKVFNFVRKEVWYKPDLSLYSDMI---LMLGKNKQIAMAEELFCELKKE-GLDPDTRVYTEMIGVYLQVGMIDKAMETY 186 (250)
Q Consensus 111 a~~~~~~m~~~~g~~~~~~~y~~li---~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~a~~~~ 186 (250)
+..+++.+.. ..-.|....-..|| ++|....+.|....+++..... ..-.....|+.|++-..-.|++.+..-+|
T Consensus 4 G~~Ll~~~~~-~~~~~~~~~VELLI~AH~cf~~~c~meGi~~vl~~~~~~~~~l~~~~~~~llvRLltGi~ry~em~yif 82 (296)
T PF14649_consen 4 GHKLLELADS-SHKSQLSCIVELLIRAHDCFTLSCSMEGIAVVLQAAKSLVNHLAAEGDWSLLVRLLTGIGRYREMTYIF 82 (296)
T ss_pred HHHHHHHHhc-cCCCCccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHccCcHHHHHHHH
Confidence 4556666642 33335666677888 5666777788888787765442 22334566888888888889999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhccCCchHHHHHHHHhhh
Q 025612 187 ETMKASGCTPHKLTFTILIRNLENA-GEEELVAAVRRDCIQYVEFPERFLEEVYQKHR 243 (250)
Q Consensus 187 ~~m~~~g~~p~~~ty~~li~~~~~~-g~~~~a~~~~~~m~~~g~~pd~~~~~~~~~~~ 243 (250)
+-+.+.+ .|..|++-.... +.+.. .+.+-+ +...+.|...+.+...+|
T Consensus 83 d~L~~n~------qfE~LL~k~~d~~~~lk~--all~yl-k~~~P~d~e~~~mv~l~F 131 (296)
T PF14649_consen 83 DILIEND------QFELLLRKGIDKVNGLKM--ALLDYL-KRCCPEDKEKFSMVALHF 131 (296)
T ss_pred HHHHHcC------hHHHHHhccccccchHHH--HHHHHH-HhcCCCCHHHHHHHHHHH
Confidence 8888864 366677664421 11211 122333 333555655555555544
No 471
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=31.22 E-value=3.1e+02 Score=22.83 Aligned_cols=74 Identities=11% Similarity=0.041 Sum_probs=46.9
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----C--CC----------CCHHHHHHHHHHHHhcCChHHHH
Q 025612 120 KEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE----G--LD----------PDTRVYTEMIGVYLQVGMIDKAM 183 (250)
Q Consensus 120 ~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~----g--~~----------p~~~ty~~li~~~~~~g~~~~a~ 183 (250)
+..|+..+......|+...+ ++...+..-++++..- + +. .+...|. ++.+.. .|+..+|.
T Consensus 144 ~~~g~~i~~~a~~~L~~~~g--~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~~~~~if~-l~dai~-~~~~~~A~ 219 (326)
T PRK07452 144 QELGVKLTPEAAELLAEAVG--NDSRRLYNELEKLALYAENSTKPISAEEVKALVSNTTQNSLQ-LADALL-QGNTGKAL 219 (326)
T ss_pred HHcCCCCCHHHHHHHHHHhC--ccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhccCcCcHHH-HHHHHH-CCCHHHHH
Confidence 45788888888888887776 4666666666665432 1 11 1122343 555544 47888888
Q ss_pred HHHHHHHHCCCCCC
Q 025612 184 ETYETMKASGCTPH 197 (250)
Q Consensus 184 ~~~~~m~~~g~~p~ 197 (250)
++++.+...|..|-
T Consensus 220 ~~l~~L~~~g~~p~ 233 (326)
T PRK07452 220 ALLDDLLDANEPAL 233 (326)
T ss_pred HHHHHHHHCCCcHH
Confidence 88888888876653
No 472
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=30.76 E-value=1.5e+02 Score=19.12 Aligned_cols=20 Identities=5% Similarity=-0.051 Sum_probs=8.1
Q ss_pred CChhHHHHHHHHHHHhcCcc
Q 025612 74 KSSSKLEEGFQSRICRLLKA 93 (250)
Q Consensus 74 ~~~~~a~~l~~~m~~~~~~~ 93 (250)
+++.++...+.++...|+.+
T Consensus 18 ~~~~~~~~~~~~l~~~G~s~ 37 (89)
T PF08542_consen 18 GDFKEARKKLYELLVEGYSA 37 (89)
T ss_dssp TCHHHHHHHHHHHHHTT--H
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 34444444444444444443
No 473
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=30.74 E-value=3e+02 Score=22.52 Aligned_cols=67 Identities=13% Similarity=0.205 Sum_probs=42.4
Q ss_pred HHcCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 025612 138 LGKNKQIAMAEELFCELKKE-GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206 (250)
Q Consensus 138 ~~~~~~~~~A~~~~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~ 206 (250)
|....++...-.+|..|... --.|+...-..+|++|.+..+--+|...+..-.-.+.+- .||..++.
T Consensus 206 Cqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~clPd~Lrd--~tfs~~l~ 273 (293)
T KOG3036|consen 206 CQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRSCLPDQLRD--GTFSLLLK 273 (293)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHhhCcchhcc--chHHHHHh
Confidence 44455666666677776543 335777778888888888777777777776655444432 34555553
No 474
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=30.72 E-value=1.1e+02 Score=22.38 Aligned_cols=43 Identities=14% Similarity=0.208 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 025612 129 SLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGV 172 (250)
Q Consensus 129 ~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~ 172 (250)
.|...++.++ +.|-+.+...++++|.++|+..+...|+-++.-
T Consensus 111 GtlGvL~~ak-~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 111 GTLGVLALAK-SKGLISKDKPILDELIEKGFRISRSILEEILRK 153 (157)
T ss_pred ehhHHHHHHH-HcCcccchHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 3444444443 346666777777887777877777777776653
No 475
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=30.68 E-value=1.7e+02 Score=19.71 Aligned_cols=48 Identities=10% Similarity=-0.049 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 025612 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG 158 (250)
Q Consensus 108 ~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g 158 (250)
.+...+++..=.+..|- ..|++.|+.++-+.|.-..|..+-+.+.++|
T Consensus 47 ~eq~~qmL~~W~~~~G~---~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~ 94 (96)
T cd08315 47 REQLYQMLLTWVNKTGR---KASVNTLLDALEAIGLRLAKESIQDELISSG 94 (96)
T ss_pred HHHHHHHHHHHHHhhCC---CcHHHHHHHHHHHcccccHHHHHHHHHHHcC
Confidence 45555555443333443 4557788888887777777777766666655
No 476
>COG5210 GTPase-activating protein [General function prediction only]
Probab=30.66 E-value=4e+02 Score=23.97 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=29.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 025612 148 EELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGC 194 (250)
Q Consensus 148 ~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~ 194 (250)
-++++.|...|+.+...++..++..+.+...++.+.++++.+--.|.
T Consensus 362 p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~ 408 (496)
T COG5210 362 PELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGS 408 (496)
T ss_pred HHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 34556666666666666666666666666666666666666655443
No 477
>TIGR03236 dnd_assoc_1 dnd system-associated protein 1. A DNA sulfur modification system, dnd (degradation during electrophoresis), is sparsely and sporadically distributed among the bacteria. Members of this protein family are strictly limited to species with the dnd operon, and are found close to the dnd operon on the chromosomes of Bacillus cereus E33L, Hahella chejuensis KCTC 2396, and Pseudoalteromonas haloplanktis TAC12.
Probab=30.08 E-value=1.4e+02 Score=25.64 Aligned_cols=53 Identities=9% Similarity=0.041 Sum_probs=23.6
Q ss_pred cCCCcHHHHHHHHHHHhcC-ChhHHHHHHHHHHHhcCcccHH---HHHHHHHHcCCH
Q 025612 56 SRVLSSEAIQAVHAMKLAK-SSSKLEEGFQSRICRLLKADLL---DTLTELRRQNEL 108 (250)
Q Consensus 56 ~~~~~~~~~~ll~~~~~~~-~~~~a~~l~~~m~~~~~~~~~~---~ll~~~~~~~~~ 108 (250)
.-.++.+.+-++.++|-.. +--+..++|.+..++|+--|-. .+|.-|-+.|.+
T Consensus 291 vL~lnQd~LLLLT~l~Vg~~~Kl~l~~L~~eFekRGvffD~~SkqeiI~fyEkin~l 347 (363)
T TIGR03236 291 VLNMNQDYLLLLTNLAVGEREKLPLNRLIEEFSKRGVAFDRQSQQMLIEFYERHGNL 347 (363)
T ss_pred eeeccHHHHHHHHHHHhCCcccchHHHHHHHHHhcCceeCchhHHHHHHHHHHhCcc
Confidence 3344444444444444222 2224455555555555443333 344444444443
No 478
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.04 E-value=3.5e+02 Score=23.04 Aligned_cols=55 Identities=18% Similarity=0.140 Sum_probs=32.5
Q ss_pred cCCHHHHHHHHHHHHHhC-------------CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 025612 105 QNELDLALKVFNFVRKEV-------------WYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161 (250)
Q Consensus 105 ~~~~~~a~~~~~~m~~~~-------------g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 161 (250)
.|++..+...++.+..-. +..+....+. ++++.. .|+..+|..+++.+...|..|
T Consensus 200 ~gdlr~~~~~lekl~~y~~~~it~~~v~~~~~~~~~~~if~-l~~ai~-~~~~~~a~~~~~~l~~~~~~~ 267 (367)
T PRK14970 200 DGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDTYIN-VTDLIL-ENKIPELLLAFNEILRKGFDG 267 (367)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCCHHHHHH-HHHHHH-cCCHHHHHHHHHHHHHcCCCH
Confidence 367888888887764111 1111122222 444443 478888888888888777666
No 479
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.92 E-value=4.6e+02 Score=24.35 Aligned_cols=55 Identities=16% Similarity=0.093 Sum_probs=29.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 025612 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE-NAGEEELVAAVRRDCI 225 (250)
Q Consensus 171 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~-~~g~~~~a~~~~~~m~ 225 (250)
....+.|.+..|+++-+-+.+..-.-|+.....+|+.|+ ++.++.-..++++..+
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344555666666665555555432234555555565554 4455555555555554
No 480
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=29.69 E-value=4.5e+02 Score=24.20 Aligned_cols=84 Identities=10% Similarity=0.083 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCC------------HHHHHHHHHHHHhc
Q 025612 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGL-DPD------------TRVYTEMIGVYLQV 176 (250)
Q Consensus 110 ~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~------------~~ty~~li~~~~~~ 176 (250)
+..+.+....+..|+..+......++... .|++..|..++++....+- ..+ ......++.+. ..
T Consensus 182 ei~~~L~~i~~~egi~i~~~al~~ia~~s--~G~~R~al~~Ldq~~~~~~~~It~~~V~~vlg~~~~~~i~~l~~al-~~ 258 (559)
T PRK05563 182 DIVERLKYILDKEGIEYEDEALRLIARAA--EGGMRDALSILDQAISFGDGKVTYEDALEVTGSVSQEALDDLVDAI-VE 258 (559)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCCCHHHHHHHhCCCCHHHHHHHHHHH-Hc
Confidence 34444444444567777766666666533 4788888888876644320 111 11233444443 34
Q ss_pred CChHHHHHHHHHHHHCCCCC
Q 025612 177 GMIDKAMETYETMKASGCTP 196 (250)
Q Consensus 177 g~~~~a~~~~~~m~~~g~~p 196 (250)
|+..+|..+++++...|..|
T Consensus 259 ~d~~~al~~l~~l~~~g~d~ 278 (559)
T PRK05563 259 GDVAKALKILEELLDEGKDP 278 (559)
T ss_pred cCHHHHHHHHHHHHHcCCCH
Confidence 77888888888888877655
No 481
>PF14744 WASH-7_mid: WASH complex subunit 7
Probab=29.62 E-value=1.3e+02 Score=25.62 Aligned_cols=49 Identities=10% Similarity=-0.014 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 025612 179 IDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVE 229 (250)
Q Consensus 179 ~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~ 229 (250)
++.|.++.+.+++.|+.+|..||--..+.+.- .+..|....+.+...|.
T Consensus 282 ~erAekf~k~irkLG~~~dG~sylD~FR~LIt--qIGNA~gyVRmirsggl 330 (350)
T PF14744_consen 282 YERAEKFNKGIRKLGLSDDGQSYLDQFRQLIT--QIGNAMGYVRMIRSGGL 330 (350)
T ss_pred HHHHHHHHHHHHHcCCCCCcchHHHHHHHHHH--HHhHHHHHHHHHHHHhH
Confidence 78888999999999999988888777766654 45556666666655443
No 482
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=29.11 E-value=4.4e+02 Score=23.95 Aligned_cols=89 Identities=12% Similarity=0.160 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-C-----C----------CCCHHHHHHHHH
Q 025612 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE-G-----L----------DPDTRVYTEMIG 171 (250)
Q Consensus 108 ~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~-g-----~----------~p~~~ty~~li~ 171 (250)
.++..+.+....+..|+..+......++.. ..|++..|...+++.... + + .++....-.|+.
T Consensus 189 ~~el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~ 266 (507)
T PRK06645 189 FEEIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVE 266 (507)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHH
Confidence 345555666555567877777766666653 358888998888887432 1 1 123333444555
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 025612 172 VYLQVGMIDKAMETYETMKASGCTPHKL 199 (250)
Q Consensus 172 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 199 (250)
+.. .|+..+|+.+++++...|..|...
T Consensus 267 ai~-~~d~~~Al~~l~~L~~~g~~~~~~ 293 (507)
T PRK06645 267 YII-HRETEKAINLINKLYGSSVNLEIF 293 (507)
T ss_pred HHH-cCCHHHHHHHHHHHHHcCCCHHHH
Confidence 544 489999999999999999877653
No 483
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=29.06 E-value=3.6e+02 Score=26.08 Aligned_cols=49 Identities=4% Similarity=-0.016 Sum_probs=22.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHH
Q 025612 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTF--TILIRNLENAGEEELVAAVRR 222 (250)
Q Consensus 170 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty--~~li~~~~~~g~~~~a~~~~~ 222 (250)
+...+..|+.+-+. .+.+.|..+|.... .+-+...+..|+.+-+.-+++
T Consensus 626 L~~Aa~~g~~~~v~----~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~ 676 (823)
T PLN03192 626 LCTAAKRNDLTAMK----ELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIM 676 (823)
T ss_pred HHHHHHhCCHHHHH----HHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHH
Confidence 33445555554433 33445555543211 123334455666665555554
No 484
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=28.75 E-value=58 Score=23.22 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 025612 141 NKQIAMAEELFCELKKEGLDPDTRVYT 167 (250)
Q Consensus 141 ~~~~~~A~~~~~~m~~~g~~p~~~ty~ 167 (250)
.|+.+.|.++++.++..|+.|....|.
T Consensus 10 ~G~~~ra~riL~~L~~Eg~ep~~lLw~ 36 (125)
T PF14840_consen 10 AGDAKRALRILQGLQAEGVEPPILLWA 36 (125)
T ss_dssp TT-HHHHHHHHHHHHHTT--HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCccHHHHHHH
Confidence 689999999999999999998777665
No 485
>PRK13342 recombination factor protein RarA; Reviewed
Probab=28.45 E-value=4e+02 Score=23.25 Aligned_cols=65 Identities=18% Similarity=0.189 Sum_probs=43.6
Q ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHCCCC
Q 025612 131 YSDMILMLGK---NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM-----IDKAMETYETMKASGCT 195 (250)
Q Consensus 131 y~~li~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~-----~~~a~~~~~~m~~~g~~ 195 (250)
+-.+++++.+ .++++.|...+..|.+.|..|....-..++.++-..|. ..-|...++....-|..
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~p 302 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMP 302 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCc
Confidence 4445555554 57899999999999999988887776666666666554 22344455555556653
No 486
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=28.43 E-value=4.7e+02 Score=24.02 Aligned_cols=139 Identities=12% Similarity=0.043 Sum_probs=74.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 176 (250)
++++.++.+.++.-.+.+..+|.. - ..+-..|-.++.+|... ..+.-..+++.+.+-. -|.+...--+..+...
T Consensus 71 ~~~~~f~~n~k~~~veh~c~~~l~-~--~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~~yEk 144 (711)
T COG1747 71 TLLTIFGDNHKNQIVEHLCTRVLE-Y--GESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELADKYEK 144 (711)
T ss_pred HHHHHhccchHHHHHHHHHHHHHH-h--cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHHHHHH
Confidence 567777777777777777777654 2 23556677777777766 3355666666665542 2444444444444444
Q ss_pred CChHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-ccCC-chHHHHHHHHhhh
Q 025612 177 GMIDKAMETYETMKASGCT-----PHKLTFTILIRNLENAGEEELVAAVRRDCIQ-YVEF-PERFLEEVYQKHR 243 (250)
Q Consensus 177 g~~~~a~~~~~~m~~~g~~-----p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~-~g~~-pd~~~~~~~~~~~ 243 (250)
++...+..+|......=+. .-...|.-|+..- ..+.|...++...... .|.. -+..+..+..++.
T Consensus 145 ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 145 IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 6677777777666544221 0112233333222 2356666666666553 3444 3344444444433
No 487
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.14 E-value=2.8e+02 Score=24.60 Aligned_cols=78 Identities=12% Similarity=0.207 Sum_probs=53.4
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-------HhcCCHHHHHHHHHHH
Q 025612 152 CELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL-------ENAGEEELVAAVRRDC 224 (250)
Q Consensus 152 ~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~-------~~~g~~~~a~~~~~~m 224 (250)
-.+...|+..+..|++.+|..+...+-.+.++++|+-+.-.|.+. .|...+..+ ....+.....+++...
T Consensus 306 ~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGskv---lfr~Alai~k~~ee~il~~~~~~~i~~~~~~~ 382 (436)
T KOG2058|consen 306 LHLEGNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFYEGSKV---LFRVALAILKKHEEEILKEDSSKEILRVLPDL 382 (436)
T ss_pred HhhhhcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhcccHH---HHHHHHHHHHHhHHHHhcCCCHHHHHHHHHHH
Confidence 445566778889999999999999999999999999999888553 333333333 3445555556666555
Q ss_pred HhccCCch
Q 025612 225 IQYVEFPE 232 (250)
Q Consensus 225 ~~~g~~pd 232 (250)
.+.-+.++
T Consensus 383 ~~~~~~~~ 390 (436)
T KOG2058|consen 383 TKRSIDPD 390 (436)
T ss_pred HHHhhhhh
Confidence 44433333
No 488
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=27.95 E-value=4.7e+02 Score=23.90 Aligned_cols=103 Identities=6% Similarity=-0.044 Sum_probs=56.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCC
Q 025612 101 ELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYL--QVGM 178 (250)
Q Consensus 101 ~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~--~~g~ 178 (250)
-..|.=+.+.-.+++.++.. .+ ...+..++++...+|-.+...-+.+.+....+.+ ...-..+..... +.-.
T Consensus 318 ~~lR~~~~e~l~~l~~~~~~----~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~-~ea~~~~~~~~~~~~~Pt 391 (574)
T smart00638 318 RLLRTLSEEQLEQLWRQLYE----KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITP-LEAAQLLAVLPHTARYPT 391 (574)
T ss_pred HHHHhCCHHHHHHHHHHHHh----CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhhhcCC
Confidence 33455566777777777742 11 5677888888888888766666666665554433 222222332222 2333
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 025612 179 IDKAMETYETMKASGCTPHKLTFTILIRNLE 209 (250)
Q Consensus 179 ~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~ 209 (250)
.+-...+++-+....+.+....+.+.+-+++
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~ 422 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYG 422 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHH
Confidence 3333333333344456666666666555555
No 489
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=27.94 E-value=2.2e+02 Score=19.98 Aligned_cols=81 Identities=10% Similarity=0.052 Sum_probs=45.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 025612 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184 (250)
Q Consensus 105 ~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 184 (250)
....++|..+.+.+.. .+- -...+--+-+..+.+.|++++|. .. ....-.||...|-+|-. .+.|..+++..
T Consensus 19 ~HcH~EA~tIa~wL~~-~~~-~~E~v~lIr~~sLmNrG~Yq~AL--l~--~~~~~~pdL~p~~AL~a--~klGL~~~~e~ 90 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQ-EGE-MEEVVALIRLSSLMNRGDYQEAL--LL--PQCHCYPDLEPWAALCA--WKLGLASALES 90 (116)
T ss_dssp TT-HHHHHHHHHHHHH-TTT-THHHHHHHHHHHHHHTT-HHHHH--HH--HTTS--GGGHHHHHHHH--HHCT-HHHHHH
T ss_pred hHHHHHHHHHHHHHHh-CCc-HHHHHHHHHHHHHHhhHHHHHHH--Hh--cccCCCccHHHHHHHHH--HhhccHHHHHH
Confidence 3457788888888854 321 12222233344567888888882 11 22234677777766643 47788888877
Q ss_pred HHHHHHHCC
Q 025612 185 TYETMKASG 193 (250)
Q Consensus 185 ~~~~m~~~g 193 (250)
.+.++..+|
T Consensus 91 ~l~rla~~g 99 (116)
T PF09477_consen 91 RLTRLASSG 99 (116)
T ss_dssp HHHHHCT-S
T ss_pred HHHHHHhCC
Confidence 777776665
No 490
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=27.82 E-value=5.1e+02 Score=24.22 Aligned_cols=93 Identities=12% Similarity=0.122 Sum_probs=55.4
Q ss_pred HHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-C--CCC----------CHHHHHHHHHHHHh
Q 025612 145 AMAEELFCEL-KKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS-G--CTP----------HKLTFTILIRNLEN 210 (250)
Q Consensus 145 ~~A~~~~~~m-~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~-g--~~p----------~~~ty~~li~~~~~ 210 (250)
++....+... ...|+..+......++.. ..|++..|...++.+... | +.. +....-.++++. .
T Consensus 181 ~eL~~~L~~il~kegi~Is~eal~~La~l--S~GdlR~AlnlLekL~~y~~~~It~e~V~ellg~~~~~~Vf~Ll~AI-~ 257 (605)
T PRK05896 181 SELQELLKSIAKKEKIKIEDNAIDKIADL--ADGSLRDGLSILDQLSTFKNSEIDIEDINKTFGLVDNNKKINLIELI-Q 257 (605)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCCHHHHHHHHHHH-H
Confidence 3444444443 334655555554444433 247888888888876443 2 111 111222444443 4
Q ss_pred cCCHHHHHHHHHHHHhccCCchHHHHHHHH
Q 025612 211 AGEEELVAAVRRDCIQYVEFPERFLEEVYQ 240 (250)
Q Consensus 211 ~g~~~~a~~~~~~m~~~g~~pd~~~~~~~~ 240 (250)
.++.+.|..++++|...|..|..++..+..
T Consensus 258 ~kd~~~al~~l~~Ll~~ge~~~~il~~L~~ 287 (605)
T PRK05896 258 KNDIEELRNLINELESKGINFEAFCRDLIN 287 (605)
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 578999999999999999998877666544
No 491
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=27.58 E-value=4.8e+02 Score=23.83 Aligned_cols=95 Identities=16% Similarity=0.213 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCCH----------HHHHHHHHHHHh
Q 025612 145 AMAEELFCELKK-EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG---CTPHK----------LTFTILIRNLEN 210 (250)
Q Consensus 145 ~~A~~~~~~m~~-~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~----------~ty~~li~~~~~ 210 (250)
++....++.... .|+.-+......+.+ ...|.+.++..++++....| +.++. .....++.+. -
T Consensus 181 ~~I~~~L~~i~~~E~I~~e~~aL~~ia~--~a~Gs~RDalslLDq~i~~~~~~It~~~v~~~lG~~~~~~~~~~~~~i-~ 257 (515)
T COG2812 181 EEIAKHLAAILDKEGINIEEDALSLIAR--AAEGSLRDALSLLDQAIAFGEGEITLESVRDMLGLTDIEKLLSLLEAI-L 257 (515)
T ss_pred HHHHHHHHHHHHhcCCccCHHHHHHHHH--HcCCChhhHHHHHHHHHHccCCcccHHHHHHHhCCCCHHHHHHHHHHH-H
Confidence 455666666544 488777777666554 45788999999999988764 22211 1122233332 3
Q ss_pred cCCHHHHHHHHHHHHhccCCchHHHHHHHHhh
Q 025612 211 AGEEELVAAVRRDCIQYVEFPERFLEEVYQKH 242 (250)
Q Consensus 211 ~g~~~~a~~~~~~m~~~g~~pd~~~~~~~~~~ 242 (250)
.++...+...++++.+.|..|..++..+....
T Consensus 258 ~~d~~~~~~~~~~l~~~G~~~~~~l~dl~~~~ 289 (515)
T COG2812 258 KGDAKEALRLINELIEEGKDPEAFLEDLLNFL 289 (515)
T ss_pred ccCHHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 57999999999999999999998877765443
No 492
>PF08771 Rapamycin_bind: Rapamycin binding domain; InterPro: IPR009076 Rapamycin and FK506 are potent immunosuppressive agents that bind to the FK506-binding protein (FKBP12), inhibiting its peptidyl-prolyl isomerase activity. The rapamycin-FKBP12 complex can then bind to and inhibit the FKBP12-rapamycin-associated protein (FRAP) in humans and RAFT1 in rats, causing cell-cycle arrest []. The FK506-FKBP12 complex cannot bind FRAP, but can bind to and inhibit calcineurin. Rapamycin is able to bind to two proteins, FKBP12 and FRAP, by simultaneously occupying two hydrophobic binding pockets, thereby linking these two proteins together to form a dimer []. The structure of the FKBP12-rapamycin-binding domain of FRAP consists of a core bundle of four helices arranged up-and-down in a left-handed twist. FRAP has been shown to interact in vitro with CLIP-170, a protein involved in microtubule organisation and function []. FRAP is thought to act as a kinase to phosphorylate CLIP-170, thereby regulating its binding to microtubules. FRAP is also thought to cooperate with p85/p110 phosphatidylinositol 3-kinase (PI3K) to induce the activation of the serine/threonine kinase p70 S6 kinase (p70S6K), which in turn phosphorylates the 40S ribosomal protein S6, thereby altering the translation of ribosomal proteins and translation elongation factors [].; GO: 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 2NPU_A 2RSE_B 4FAP_B 1AUE_A 2GAQ_A 1FAP_B 2FAP_B 3FAP_B 1NSG_B.
Probab=27.43 E-value=1.8e+02 Score=19.79 Aligned_cols=54 Identities=9% Similarity=0.062 Sum_probs=25.6
Q ss_pred HHHHcCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 025612 136 LMLGKNKQIAMAEELFCELKKE-GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA 191 (250)
Q Consensus 136 ~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 191 (250)
+.|...++++...+++..+.+. .-.|.+..=.+.+..|++ ++.+|.+.++....
T Consensus 22 ~~y~~~~n~~~m~~~L~pLh~~l~k~PeT~~E~~F~~~fg~--~L~~A~~~~~~y~~ 76 (100)
T PF08771_consen 22 RLYFGENNVEKMFKILEPLHEMLEKGPETLREVSFAQAFGR--DLQEAREWLKRYER 76 (100)
T ss_dssp HHHHTTT-HHHHHHHHHHHHHHHHHS-SSHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHhh
Confidence 3444556666666655544332 113454444555555554 35555555555444
No 493
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=27.41 E-value=2e+02 Score=19.51 Aligned_cols=62 Identities=11% Similarity=-0.037 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCC
Q 025612 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG--MIDKAMETYETMKASGC 194 (250)
Q Consensus 131 y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g--~~~~a~~~~~~m~~~g~ 194 (250)
...+|..|...+++++|.+.+.++..... ....-..+|..+...+ .-+.+..++..+.+.|.
T Consensus 5 i~~~l~ey~~~~D~~ea~~~l~~L~~~~~--~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~ 68 (113)
T smart00544 5 IFLIIEEYLSSGDTDEAVHCLLELKLPEQ--HHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANV 68 (113)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCCcc--hHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCC
Confidence 34577788888899999888888765422 2222233444444432 23344555666665554
No 494
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=27.40 E-value=2.7e+02 Score=20.97 Aligned_cols=92 Identities=10% Similarity=0.137 Sum_probs=52.8
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHH-HhcCChHHHHHHHHHH
Q 025612 113 KVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV--YTEMIGVY-LQVGMIDKAMETYETM 189 (250)
Q Consensus 113 ~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t--y~~li~~~-~~~g~~~~a~~~~~~m 189 (250)
..+..+.+..|..++......+...+....-+..+.++++.+.++|++.-..| -...+... .+.| + ...|+.+
T Consensus 63 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~g-l---~~~fd~i 138 (198)
T TIGR01428 63 EALRYLLGRLGLEDDESAADRLAEAYLRLPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAG-L---DDPFDAV 138 (198)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCC-C---hhhhhee
Confidence 34444445567777766666777777767777889999999988886543222 11122222 2233 2 2233333
Q ss_pred HH----CCCCCCHHHHHHHHHHH
Q 025612 190 KA----SGCTPHKLTFTILIRNL 208 (250)
Q Consensus 190 ~~----~g~~p~~~ty~~li~~~ 208 (250)
.. ...+|+...|..+++.+
T Consensus 139 ~~s~~~~~~KP~~~~~~~~~~~~ 161 (198)
T TIGR01428 139 LSADAVRAYKPAPQVYQLALEAL 161 (198)
T ss_pred EehhhcCCCCCCHHHHHHHHHHh
Confidence 21 12478888777776655
No 495
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=27.07 E-value=2.4e+02 Score=20.19 Aligned_cols=111 Identities=8% Similarity=-0.015 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH----HHHHHh-------
Q 025612 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEM----IGVYLQ------- 175 (250)
Q Consensus 107 ~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~l----i~~~~~------- 175 (250)
++.-|.+++..... .| -+...++.+....-.-.++++.+.+....-.|..+. +.. |+.|-.
T Consensus 4 Np~IA~~~l~~l~~----s~---~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl-~~yI~~cI~~ce~~kd~~~q 75 (126)
T PF10155_consen 4 NPNIAIEILVKLIN----SP---NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFL-HMYISNCIKSCESIKDKYMQ 75 (126)
T ss_pred cHHHHHHHHHHHcC----Cc---hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHH-HHHHHHHHHHHHhhcccccc
Confidence 44555555555532 12 266667777777777777788888777654444332 222 233222
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025612 176 VGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCI 225 (250)
Q Consensus 176 ~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~ 225 (250)
.....-.-.+++.+.+.|+.-....|.-+=.-|.+-.++.+|..+|+.++
T Consensus 76 ~R~VRlvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kllk 125 (126)
T PF10155_consen 76 NRLVRLVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLLK 125 (126)
T ss_pred cchhhhHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHHh
Confidence 22233334455667777876566666666666778889999999998775
No 496
>KOG3154 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.00 E-value=1.7e+02 Score=23.19 Aligned_cols=51 Identities=14% Similarity=0.010 Sum_probs=26.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCcccHH-HHHHHHHHcCCHHHHHHHHHH
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLKADLL-DTLTELRRQNELDLALKVFNF 117 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~ 117 (250)
..+++.+|..++|..+++.+.=..--.++. .||+.|+++...++..++=++
T Consensus 154 aA~l~I~G~~e~A~~lL~~F~wG~~Fl~lN~~lLd~Ya~C~~s~ev~~~qn~ 205 (263)
T KOG3154|consen 154 AACLYICGFPEEARELLDKFKWGHAFLELNKDLLDEYAKCASSAEVVEVQNE 205 (263)
T ss_pred HhHeeeecChhHHHHHHhcCcchHHHHHHhHHHHHHHHhhCCHHHHHHHHHH
Confidence 344556677777777666553111111122 466666666666655544433
No 497
>PHA03100 ankyrin repeat protein; Provisional
Probab=26.67 E-value=4e+02 Score=23.43 Aligned_cols=132 Identities=8% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCcccHH-----HHHHH-----HHHcCCHHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHH--cCCCHH
Q 025612 80 EEGFQSRICRLLKADLL-----DTLTE-----LRRQNELDLALKVFNFVRKEVWYKPDLSLY--SDMILMLG--KNKQIA 145 (250)
Q Consensus 80 ~~l~~~m~~~~~~~~~~-----~ll~~-----~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y--~~li~~~~--~~~~~~ 145 (250)
.++++.+.+.|..|+.. +.+.. .+..|..+-+.-+.+ .|..++.... .+.+...+ ..|+.+
T Consensus 48 ~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~-----~ga~i~~~d~~g~tpL~~A~~~~~~~~~ 122 (480)
T PHA03100 48 IDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLE-----YGANVNAPDNNGITPLLYAISKKSNSYS 122 (480)
T ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHH-----CCCCCCCCCCCCCchhhHHHhcccChHH
Q ss_pred HHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHH
Q 025612 146 MAEELFCELKKEGLDPDTRVYT--EMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF--TILIRNLENAGEEELVAAVR 221 (250)
Q Consensus 146 ~A~~~~~~m~~~g~~p~~~ty~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty--~~li~~~~~~g~~~~a~~~~ 221 (250)
-+..+++ .|..++..... +.+...++.|. .-.++.+.+.+.|..++...- .+-+...+..|+.+-+.-++
T Consensus 123 iv~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll 196 (480)
T PHA03100 123 IVEYLLD----NGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLL 196 (480)
T ss_pred HHHHHHH----cCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHH
Q ss_pred H
Q 025612 222 R 222 (250)
Q Consensus 222 ~ 222 (250)
+
T Consensus 197 ~ 197 (480)
T PHA03100 197 D 197 (480)
T ss_pred H
No 498
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=26.63 E-value=2e+02 Score=19.17 Aligned_cols=64 Identities=6% Similarity=-0.035 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 025612 111 ALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDK 181 (250)
Q Consensus 111 a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 181 (250)
+.++++.+.+ .|+ .+....+.+-.+-...|+.+.|..+++.+. + ....|+.++.++-..|.-+-
T Consensus 21 ~~~v~d~ll~-~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r----g~~aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 21 TRDVCDKCLE-QGL-LTEEDRNRIEAATENHGNESGARELLKRIV-Q----KEGWFSKFLQALRETEHHEL 84 (88)
T ss_pred HHHHHHHHHh-cCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-c----CCcHHHHHHHHHHHcCchhh
Confidence 3455555543 332 233333333333335566666666666665 3 23345566666655554433
No 499
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.57 E-value=5.3e+02 Score=23.98 Aligned_cols=121 Identities=11% Similarity=0.020 Sum_probs=78.6
Q ss_pred cCCCcHHHHHHHHHHHhcCChhHHHHH-------HHHHHHhcCcccHH-------------------HHHHHHHHcCCHH
Q 025612 56 SRVLSSEAIQAVHAMKLAKSSSKLEEG-------FQSRICRLLKADLL-------------------DTLTELRRQNELD 109 (250)
Q Consensus 56 ~~~~~~~~~~ll~~~~~~~~~~~a~~l-------~~~m~~~~~~~~~~-------------------~ll~~~~~~~~~~ 109 (250)
.+.--...+.+...+...|+.+-+-.+ |++.....+.|... .-|..+.+.|.+.
T Consensus 280 sPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~r 359 (665)
T KOG2422|consen 280 SPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWR 359 (665)
T ss_pred CCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChH
Confidence 344445566677778788888754444 44444444444221 3566777889999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCC
Q 025612 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLG-KNKQIAMAEELFCELKKEG---LDPDTRVYTEMIGVYLQVGM 178 (250)
Q Consensus 110 ~a~~~~~~m~~~~g~~~~~~~y~~li~~~~-~~~~~~~A~~~~~~m~~~g---~~p~~~ty~~li~~~~~~g~ 178 (250)
.|+++-..+.. -...-|....-.+|+.|+ ++.++.--++++++.+..+ .-|| ..|+.-|..+.-.++
T Consensus 360 TA~E~cKllls-Ldp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN-~~yS~AlA~f~l~~~ 430 (665)
T KOG2422|consen 360 TALEWCKLLLS-LDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN-FGYSLALARFFLRKN 430 (665)
T ss_pred HHHHHHHHHhh-cCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC-chHHHHHHHHHHhcC
Confidence 99999888763 443346777788898886 7888999999999875542 3344 445555544444443
No 500
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.26 E-value=5.4e+02 Score=24.04 Aligned_cols=85 Identities=11% Similarity=0.151 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-C--C----------CCCHHHHHHHHHHHHhc
Q 025612 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE-G--L----------DPDTRVYTEMIGVYLQV 176 (250)
Q Consensus 110 ~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~-g--~----------~p~~~ty~~li~~~~~~ 176 (250)
+....+....+..|+..+......++... .|++..|...++.+... | + .++...+-.|+.+.. .
T Consensus 184 ei~~~L~~ia~~egi~i~~~al~~La~~s--~gdlr~al~~Lekl~~y~~~~It~~~V~~~l~~~~~~~iF~L~dai~-~ 260 (614)
T PRK14971 184 DIVNHLQYVASKEGITAEPEALNVIAQKA--DGGMRDALSIFDQVVSFTGGNITYKSVIENLNILDYDYYFRLTDALL-A 260 (614)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCccHHHHHHHhCCCCHHHHHHHHHHHH-c
Confidence 34444444434578877776666666544 48888888888775321 1 1 122333444555544 4
Q ss_pred CChHHHHHHHHHHHHCCCCCC
Q 025612 177 GMIDKAMETYETMKASGCTPH 197 (250)
Q Consensus 177 g~~~~a~~~~~~m~~~g~~p~ 197 (250)
|+..+|+.+++++...|..|.
T Consensus 261 ~~~~~al~ll~~Ll~~g~~~~ 281 (614)
T PRK14971 261 GKVSDSLLLFDEILNKGFDGS 281 (614)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 789999999999999888765
Done!