Query 025612
Match_columns 250
No_of_seqs 206 out of 2826
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 13:53:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025612.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025612hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 1.6E-35 5.4E-40 260.4 24.0 180 64-244 30-221 (501)
2 4g26_A Pentatricopeptide repea 100.0 6.7E-31 2.3E-35 231.0 19.6 162 77-239 7-181 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 1.4E-23 4.8E-28 192.0 14.8 116 97-212 132-250 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.9 2.6E-24 9.1E-29 196.7 9.5 116 122-237 121-240 (1134)
5 2xpi_A Anaphase-promoting comp 99.6 8.3E-14 2.8E-18 123.9 23.5 164 62-228 375-546 (597)
6 2xpi_A Anaphase-promoting comp 99.6 1E-13 3.4E-18 123.4 23.3 165 64-232 343-513 (597)
7 2ho1_A Type 4 fimbrial biogene 99.3 3.9E-09 1.3E-13 83.2 22.9 161 65-228 42-205 (252)
8 2vq2_A PILW, putative fimbrial 99.3 7.9E-09 2.7E-13 79.5 24.1 164 63-229 11-178 (225)
9 1w3b_A UDP-N-acetylglucosamine 99.2 3.7E-09 1.3E-13 89.0 23.0 127 97-227 242-368 (388)
10 3mkr_A Coatomer subunit epsilo 99.2 2.2E-09 7.4E-14 87.7 20.5 159 66-234 71-237 (291)
11 2ho1_A Type 4 fimbrial biogene 99.2 7E-09 2.4E-13 81.7 22.8 167 60-229 71-240 (252)
12 2q7f_A YRRB protein; TPR, prot 99.2 7.4E-09 2.5E-13 80.9 22.1 193 34-230 27-225 (243)
13 2y4t_A DNAJ homolog subfamily 99.2 6.3E-09 2.2E-13 89.0 22.3 161 62-227 28-206 (450)
14 1w3b_A UDP-N-acetylglucosamine 99.2 1.8E-08 6.1E-13 84.8 23.9 156 67-227 176-334 (388)
15 2vq2_A PILW, putative fimbrial 99.2 2.3E-08 7.9E-13 76.9 22.7 166 61-228 43-212 (225)
16 3as5_A MAMA; tetratricopeptide 99.2 8.3E-09 2.8E-13 76.8 19.0 160 64-227 12-173 (186)
17 2y4t_A DNAJ homolog subfamily 99.1 1.1E-08 3.6E-13 87.6 21.8 164 60-228 60-241 (450)
18 1b89_A Protein (clathrin heavy 99.1 3.8E-11 1.3E-15 102.6 6.0 175 22-222 26-201 (449)
19 2pl2_A Hypothetical conserved 99.1 4.4E-08 1.5E-12 76.1 22.8 161 62-228 7-181 (217)
20 4eqf_A PEX5-related protein; a 99.1 2.7E-08 9.3E-13 82.9 22.8 163 63-228 68-277 (365)
21 4eqf_A PEX5-related protein; a 99.1 5.8E-09 2E-13 87.0 18.0 169 57-227 96-310 (365)
22 3mkr_A Coatomer subunit epsilo 99.1 1.5E-08 5.2E-13 82.6 19.1 157 63-228 104-265 (291)
23 3hym_B Cell division cycle pro 99.1 5.3E-08 1.8E-12 79.3 22.0 163 62-227 127-299 (330)
24 2q7f_A YRRB protein; TPR, prot 99.1 1.4E-08 4.8E-13 79.3 17.7 164 62-229 25-190 (243)
25 3uq3_A Heat shock protein STI1 99.1 4.9E-08 1.7E-12 76.7 20.8 161 65-227 43-236 (258)
26 1fch_A Peroxisomal targeting s 99.1 4.1E-08 1.4E-12 81.6 21.3 169 57-227 95-314 (368)
27 1fch_A Peroxisomal targeting s 99.1 2.1E-07 7.2E-12 77.2 25.4 164 62-228 66-281 (368)
28 3vtx_A MAMA; tetratricopeptide 99.1 1.2E-07 4.2E-12 71.0 21.8 161 63-227 8-170 (184)
29 3uq3_A Heat shock protein STI1 99.0 9.9E-08 3.4E-12 74.9 21.7 168 62-230 7-205 (258)
30 3hym_B Cell division cycle pro 99.0 1.2E-07 4E-12 77.3 22.2 163 63-228 93-266 (330)
31 2pl2_A Hypothetical conserved 99.0 3.5E-08 1.2E-12 76.7 18.0 162 59-226 38-213 (217)
32 2fo7_A Synthetic consensus TPR 99.0 3.8E-08 1.3E-12 69.0 16.0 126 98-227 7-132 (136)
33 3cv0_A Peroxisome targeting si 99.0 6.9E-07 2.4E-11 72.5 25.2 160 66-228 27-236 (327)
34 3nf1_A KLC 1, kinesin light ch 99.0 3.8E-08 1.3E-12 79.5 17.4 162 65-226 74-306 (311)
35 3edt_B KLC 2, kinesin light ch 99.0 3.6E-08 1.2E-12 78.3 17.0 164 63-226 46-280 (283)
36 3nf1_A KLC 1, kinesin light ch 99.0 5.8E-08 2E-12 78.4 17.5 165 63-227 30-224 (311)
37 1ouv_A Conserved hypothetical 98.9 7.4E-07 2.5E-11 71.2 23.5 153 66-228 44-216 (273)
38 1b89_A Protein (clathrin heavy 98.9 3.3E-10 1.1E-14 96.8 3.6 141 62-224 34-174 (449)
39 3cv0_A Peroxisome targeting si 98.9 1.3E-07 4.3E-12 77.0 18.6 167 61-229 56-271 (327)
40 3ieg_A DNAJ homolog subfamily 98.9 9.2E-07 3.1E-11 72.6 23.9 158 65-227 42-217 (359)
41 2fo7_A Synthetic consensus TPR 98.9 2.4E-07 8.1E-12 64.8 16.9 127 63-192 4-132 (136)
42 3ieg_A DNAJ homolog subfamily 98.9 6.1E-07 2.1E-11 73.7 21.9 162 63-229 6-185 (359)
43 1xnf_A Lipoprotein NLPI; TPR, 98.9 1.4E-07 4.9E-12 74.9 17.0 153 67-225 50-204 (275)
44 1ouv_A Conserved hypothetical 98.9 2.8E-06 9.5E-11 67.8 24.5 154 65-228 11-180 (273)
45 4gyw_A UDP-N-acetylglucosamine 98.8 4.4E-07 1.5E-11 83.0 20.5 155 63-226 12-173 (723)
46 1xnf_A Lipoprotein NLPI; TPR, 98.8 7.6E-07 2.6E-11 70.6 19.8 162 61-227 78-244 (275)
47 4abn_A Tetratricopeptide repea 98.8 4.4E-07 1.5E-11 79.0 19.7 160 63-228 105-288 (474)
48 2gw1_A Mitochondrial precursor 98.8 5.1E-07 1.7E-11 78.1 19.8 168 60-230 304-481 (514)
49 2gw1_A Mitochondrial precursor 98.8 9.6E-07 3.3E-11 76.4 21.2 91 63-157 9-102 (514)
50 2ond_A Cleavage stimulation fa 98.8 2E-06 6.8E-11 70.2 21.2 163 62-227 101-270 (308)
51 3u4t_A TPR repeat-containing p 98.8 3E-06 1E-10 67.1 21.6 162 64-228 7-172 (272)
52 3as5_A MAMA; tetratricopeptide 98.8 9.5E-07 3.3E-11 65.4 17.6 129 97-229 13-141 (186)
53 3fp2_A TPR repeat-containing p 98.8 5.3E-07 1.8E-11 78.6 18.3 158 66-227 249-407 (537)
54 3edt_B KLC 2, kinesin light ch 98.8 1.9E-07 6.5E-12 74.1 14.1 157 71-227 12-198 (283)
55 4i17_A Hypothetical protein; T 98.8 4.5E-06 1.5E-10 64.7 21.5 160 62-228 9-210 (228)
56 3mv2_B Coatomer subunit epsilo 98.8 1.7E-06 5.9E-11 70.7 19.3 158 64-228 104-283 (310)
57 2ond_A Cleavage stimulation fa 98.6 1.2E-05 4.1E-10 65.5 21.7 155 72-232 69-238 (308)
58 3fp2_A TPR repeat-containing p 98.6 7.7E-06 2.6E-10 71.2 21.7 162 66-230 316-494 (537)
59 3mv2_B Coatomer subunit epsilo 98.6 3.6E-06 1.2E-10 68.8 17.3 154 63-226 73-239 (310)
60 3u4t_A TPR repeat-containing p 98.6 2.9E-06 1E-10 67.2 16.7 161 62-227 39-208 (272)
61 3qky_A Outer membrane assembly 98.6 6.2E-06 2.1E-10 65.4 18.6 163 61-227 16-224 (261)
62 2yhc_A BAMD, UPF0169 lipoprote 98.6 6.8E-06 2.3E-10 63.9 18.1 162 63-228 7-214 (225)
63 1qqe_A Vesicular transport pro 98.6 4.8E-06 1.7E-10 67.5 17.8 161 66-226 43-227 (292)
64 2h6f_A Protein farnesyltransfe 98.5 1.2E-05 4.3E-10 67.9 19.5 159 63-227 100-269 (382)
65 1qqe_A Vesicular transport pro 98.5 5.2E-06 1.8E-10 67.3 16.6 162 63-226 80-268 (292)
66 1hh8_A P67PHOX, NCF-2, neutrop 98.5 1.9E-05 6.6E-10 60.1 19.0 84 102-191 16-99 (213)
67 2vsy_A XCC0866; transferase, g 98.5 6.9E-06 2.4E-10 72.8 18.4 152 73-228 2-158 (568)
68 3vtx_A MAMA; tetratricopeptide 98.5 4.3E-05 1.5E-09 56.9 20.2 128 97-228 10-137 (184)
69 1na0_A Designed protein CTPR3; 98.5 1.4E-05 4.7E-10 54.9 15.8 98 128-227 9-106 (125)
70 3u3w_A Transcriptional activat 98.5 3.8E-05 1.3E-09 62.1 20.4 161 66-226 81-265 (293)
71 4gyw_A UDP-N-acetylglucosamine 98.5 2E-05 6.8E-10 72.1 20.4 124 98-228 15-141 (723)
72 3ulq_A Response regulator aspa 98.5 1.9E-05 6.5E-10 66.2 18.6 161 67-227 110-293 (383)
73 2qfc_A PLCR protein; TPR, HTH, 98.5 2.3E-05 8E-10 63.3 18.5 161 65-225 80-264 (293)
74 4abn_A Tetratricopeptide repea 98.5 2.5E-06 8.5E-11 74.2 13.4 164 56-224 133-318 (474)
75 4i17_A Hypothetical protein; T 98.5 3.1E-05 1.1E-09 59.8 18.2 126 97-227 12-146 (228)
76 2ooe_A Cleavage stimulation fa 98.4 2.8E-05 9.5E-10 68.3 19.3 162 63-227 324-492 (530)
77 3urz_A Uncharacterized protein 98.4 5.1E-05 1.7E-09 58.1 18.3 157 63-229 7-188 (208)
78 2ooe_A Cleavage stimulation fa 98.4 3.3E-05 1.1E-09 67.8 19.4 152 73-232 292-460 (530)
79 3q15_A PSP28, response regulat 98.4 2.1E-05 7.2E-10 65.9 17.3 158 70-227 111-290 (378)
80 3rjv_A Putative SEL1 repeat pr 98.4 0.00019 6.4E-09 55.2 20.9 164 62-232 20-202 (212)
81 3qou_A Protein YBBN; thioredox 98.4 1.7E-05 5.8E-10 64.2 15.3 155 64-224 121-281 (287)
82 1na0_A Designed protein CTPR3; 98.4 3.1E-05 1.1E-09 53.0 14.6 109 97-209 14-122 (125)
83 3u3w_A Transcriptional activat 98.4 3.9E-05 1.3E-09 62.0 17.2 129 98-226 81-224 (293)
84 1a17_A Serine/threonine protei 98.4 3.4E-05 1.2E-09 56.0 15.4 125 98-226 19-145 (166)
85 2r5s_A Uncharacterized protein 98.3 1.3E-05 4.6E-10 59.6 13.3 158 63-225 9-171 (176)
86 3sf4_A G-protein-signaling mod 98.3 1.5E-05 5.3E-10 66.5 14.8 151 76-226 163-335 (406)
87 3ro2_A PINS homolog, G-protein 98.3 1.2E-05 4E-10 65.0 13.1 152 76-227 159-332 (338)
88 3gw4_A Uncharacterized protein 98.3 2.4E-05 8.1E-10 59.0 14.0 155 71-227 3-176 (203)
89 2xm6_A Protein corresponding t 98.3 0.00047 1.6E-08 59.8 23.8 154 65-228 44-217 (490)
90 2ifu_A Gamma-SNAP; membrane fu 98.3 5.6E-05 1.9E-09 61.6 16.4 159 66-225 42-222 (307)
91 4a1s_A PINS, partner of inscut 98.3 1.5E-05 5.2E-10 67.0 13.4 162 65-226 53-251 (411)
92 1elw_A TPR1-domain of HOP; HOP 98.3 9.6E-05 3.3E-09 50.0 15.3 99 128-228 4-102 (118)
93 4a1s_A PINS, partner of inscut 98.2 3.2E-05 1.1E-09 65.0 15.0 165 65-229 171-374 (411)
94 1hh8_A P67PHOX, NCF-2, neutrop 98.2 0.00021 7.3E-09 54.2 18.2 123 65-193 11-151 (213)
95 2lni_A Stress-induced-phosphop 98.2 8.1E-05 2.8E-09 51.7 14.6 97 128-226 16-112 (133)
96 2xm6_A Protein corresponding t 98.2 0.00066 2.3E-08 58.8 23.3 157 63-229 78-254 (490)
97 3ro2_A PINS homolog, G-protein 98.2 5E-05 1.7E-09 61.2 14.9 160 67-226 12-211 (338)
98 3rjv_A Putative SEL1 repeat pr 98.2 0.00025 8.5E-09 54.5 17.9 143 77-227 3-158 (212)
99 2vyi_A SGTA protein; chaperone 98.2 6.8E-05 2.3E-09 51.7 13.5 112 98-213 18-129 (131)
100 3sf4_A G-protein-signaling mod 98.2 3.7E-05 1.3E-09 64.1 14.2 162 65-226 52-255 (406)
101 2pzi_A Probable serine/threoni 98.2 6.3E-05 2.2E-09 68.4 16.4 152 71-228 402-564 (681)
102 2dba_A Smooth muscle cell asso 98.2 0.00026 9E-09 50.1 16.3 99 127-228 27-129 (148)
103 2vyi_A SGTA protein; chaperone 98.2 0.00019 6.5E-09 49.3 15.2 101 127-229 11-111 (131)
104 4ga2_A E3 SUMO-protein ligase 98.2 9.2E-05 3.2E-09 53.6 13.8 134 72-213 9-149 (150)
105 1elr_A TPR2A-domain of HOP; HO 98.2 0.00012 4.3E-09 50.4 14.0 96 130-226 6-107 (131)
106 1a17_A Serine/threonine protei 98.1 0.00012 4.2E-09 52.9 14.5 125 63-190 16-144 (166)
107 3ulq_A Response regulator aspa 98.1 0.00017 6E-09 60.2 17.0 161 64-224 147-332 (383)
108 3upv_A Heat shock protein STI1 98.1 0.0002 7E-09 49.7 14.9 95 130-226 6-100 (126)
109 3gyz_A Chaperone protein IPGC; 98.1 0.00032 1.1E-08 51.1 16.3 96 98-198 42-137 (151)
110 2e2e_A Formate-dependent nitri 98.1 6.1E-05 2.1E-09 55.7 12.6 119 71-192 21-144 (177)
111 4gco_A Protein STI-1; structur 98.1 0.00012 3.9E-09 51.5 13.4 89 100-191 21-109 (126)
112 4gco_A Protein STI-1; structur 98.1 0.00033 1.1E-08 49.1 15.7 103 124-228 8-111 (126)
113 2kck_A TPR repeat; tetratricop 98.1 4.8E-05 1.6E-09 51.1 10.9 96 130-227 8-106 (112)
114 1p5q_A FKBP52, FK506-binding p 98.1 0.00016 5.6E-09 59.7 16.1 125 98-225 153-292 (336)
115 2lni_A Stress-induced-phosphop 98.1 0.00014 4.9E-09 50.4 13.6 110 98-212 22-132 (133)
116 1hz4_A MALT regulatory protein 98.1 0.00047 1.6E-08 57.2 18.6 161 66-226 99-281 (373)
117 1hz4_A MALT regulatory protein 98.1 0.00044 1.5E-08 57.4 18.4 160 68-227 22-203 (373)
118 3q49_B STIP1 homology and U bo 98.1 0.00027 9.1E-09 49.6 14.4 98 127-226 8-105 (137)
119 3q15_A PSP28, response regulat 98.1 0.00024 8.1E-09 59.4 16.4 159 65-226 187-364 (378)
120 2e2e_A Formate-dependent nitri 98.1 0.00011 3.8E-09 54.3 12.9 122 103-228 21-145 (177)
121 2fbn_A 70 kDa peptidylprolyl i 98.0 3.3E-05 1.1E-09 58.5 10.0 129 98-229 44-188 (198)
122 4b4t_Q 26S proteasome regulato 98.0 0.0006 2E-08 57.6 18.9 164 63-226 7-203 (434)
123 2h6f_A Protein farnesyltransfe 98.0 0.00022 7.7E-09 60.2 15.9 129 98-230 103-232 (382)
124 3gyz_A Chaperone protein IPGC; 98.0 0.00014 4.9E-09 53.0 12.9 98 128-228 36-134 (151)
125 1xi4_A Clathrin heavy chain; a 98.0 0.00032 1.1E-08 67.6 17.6 141 62-224 1107-1247(1630)
126 3qky_A Outer membrane assembly 98.0 0.00045 1.5E-08 54.4 16.3 129 97-227 20-177 (261)
127 1elr_A TPR2A-domain of HOP; HO 98.0 0.00018 6E-09 49.6 12.4 106 98-207 10-121 (131)
128 3sz7_A HSC70 cochaperone (SGT) 98.0 0.00019 6.5E-09 52.4 13.1 91 98-191 17-107 (164)
129 2qfc_A PLCR protein; TPR, HTH, 98.0 0.00063 2.2E-08 54.7 17.3 131 97-227 80-225 (293)
130 2vgx_A Chaperone SYCD; alterna 98.0 0.00034 1.2E-08 50.5 14.2 93 131-225 24-116 (148)
131 2vsy_A XCC0866; transferase, g 98.0 0.00058 2E-08 60.4 17.8 129 61-192 24-157 (568)
132 4ga2_A E3 SUMO-protein ligase 98.0 6.3E-05 2.1E-09 54.6 9.5 118 104-227 9-129 (150)
133 2xcb_A PCRH, regulatory protei 97.9 0.00028 9.7E-09 50.3 12.9 88 100-190 26-113 (142)
134 3qou_A Protein YBBN; thioredox 97.9 0.0012 3.9E-08 53.2 17.9 127 97-228 122-249 (287)
135 3ro3_A PINS homolog, G-protein 97.9 0.00017 6E-09 51.4 11.6 129 98-226 15-157 (164)
136 3upv_A Heat shock protein STI1 97.9 0.0008 2.7E-08 46.6 14.5 91 98-191 10-100 (126)
137 3gw4_A Uncharacterized protein 97.9 0.00016 5.3E-09 54.3 11.3 123 102-226 2-135 (203)
138 2ifu_A Gamma-SNAP; membrane fu 97.9 0.00023 8E-09 57.9 13.0 128 98-226 42-183 (307)
139 1xi4_A Clathrin heavy chain; a 97.9 0.0013 4.4E-08 63.6 19.4 148 61-225 1135-1307(1630)
140 1elw_A TPR1-domain of HOP; HOP 97.9 0.00078 2.7E-08 45.3 13.6 92 98-192 10-101 (118)
141 3sz7_A HSC70 cochaperone (SGT) 97.9 0.001 3.5E-08 48.5 15.0 97 128-226 11-107 (164)
142 2pzi_A Probable serine/threoni 97.9 0.00042 1.4E-08 63.0 15.4 147 61-213 434-583 (681)
143 4e6h_A MRNA 3'-END-processing 97.9 0.00096 3.3E-08 60.5 17.6 163 66-230 384-573 (679)
144 2kck_A TPR repeat; tetratricop 97.9 0.00047 1.6E-08 46.0 12.2 92 98-192 12-106 (112)
145 3n71_A Histone lysine methyltr 97.9 0.00029 9.9E-09 61.5 13.6 127 101-227 318-464 (490)
146 4gcn_A Protein STI-1; structur 97.8 0.00058 2E-08 47.8 12.7 99 98-200 14-118 (127)
147 3ro3_A PINS homolog, G-protein 97.8 0.00081 2.8E-08 47.8 13.8 128 64-191 13-157 (164)
148 2dba_A Smooth muscle cell asso 97.8 0.00095 3.3E-08 47.1 14.0 62 129-191 66-127 (148)
149 2xev_A YBGF; tetratricopeptide 97.8 0.00085 2.9E-08 46.3 13.5 91 99-191 9-104 (129)
150 4gcn_A Protein STI-1; structur 97.8 0.00043 1.5E-08 48.5 11.8 104 128-232 8-117 (127)
151 2vgx_A Chaperone SYCD; alterna 97.8 0.0014 4.9E-08 47.1 14.9 93 97-192 26-118 (148)
152 2yhc_A BAMD, UPF0169 lipoprote 97.8 0.00064 2.2E-08 52.5 13.8 127 97-227 9-176 (225)
153 2xcb_A PCRH, regulatory protei 97.8 0.00085 2.9E-08 47.7 13.5 98 128-227 18-115 (142)
154 3k9i_A BH0479 protein; putativ 97.8 0.00011 3.6E-09 50.7 8.0 85 105-191 3-89 (117)
155 1p5q_A FKBP52, FK506-binding p 97.8 0.0017 5.8E-08 53.6 16.6 125 63-190 150-292 (336)
156 2xev_A YBGF; tetratricopeptide 97.8 0.0011 3.7E-08 45.8 13.2 89 135-227 9-105 (129)
157 2r5s_A Uncharacterized protein 97.8 0.00064 2.2E-08 50.3 12.6 127 97-229 11-139 (176)
158 3q49_B STIP1 homology and U bo 97.7 0.0014 4.9E-08 45.7 13.5 92 97-191 14-105 (137)
159 4f3v_A ESX-1 secretion system 97.7 0.0014 4.9E-08 52.7 14.3 127 98-230 108-240 (282)
160 1hxi_A PEX5, peroxisome target 97.7 0.00072 2.5E-08 46.9 11.2 90 98-191 23-113 (121)
161 2fbn_A 70 kDa peptidylprolyl i 97.7 0.0042 1.4E-07 46.6 16.1 126 100-228 12-152 (198)
162 1wao_1 Serine/threonine protei 97.7 0.00038 1.3E-08 60.5 11.3 118 102-222 16-134 (477)
163 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.0011 3.7E-08 57.2 13.9 125 98-225 274-413 (457)
164 3k9i_A BH0479 protein; putativ 97.6 0.00013 4.4E-09 50.3 6.5 56 98-155 33-88 (117)
165 2c2l_A CHIP, carboxy terminus 97.6 0.0021 7.2E-08 51.5 14.4 92 97-191 9-100 (281)
166 3urz_A Uncharacterized protein 97.6 0.0013 4.4E-08 50.1 12.6 120 99-224 11-150 (208)
167 4f3v_A ESX-1 secretion system 97.6 0.0011 3.8E-08 53.3 12.4 129 65-201 107-244 (282)
168 1hxi_A PEX5, peroxisome target 97.6 0.0016 5.6E-08 45.1 11.5 87 136-225 25-112 (121)
169 4e6h_A MRNA 3'-END-processing 97.6 0.0038 1.3E-07 56.6 16.5 165 61-229 344-535 (679)
170 4g1t_A Interferon-induced prot 97.5 0.0016 5.4E-08 55.7 13.2 99 130-228 336-460 (472)
171 4b4t_Q 26S proteasome regulato 97.5 0.0076 2.6E-07 50.7 16.5 164 63-226 58-244 (434)
172 3n71_A Histone lysine methyltr 97.4 0.0028 9.6E-08 55.2 13.7 125 68-192 317-464 (490)
173 1ihg_A Cyclophilin 40; ppiase 97.4 0.0024 8.3E-08 53.5 12.8 119 98-219 229-362 (370)
174 3rkv_A Putative peptidylprolyl 97.4 0.0029 9.9E-08 45.8 11.7 68 128-198 63-130 (162)
175 3rkv_A Putative peptidylprolyl 97.4 0.015 5E-07 42.0 15.3 99 129-228 12-127 (162)
176 3e4b_A ALGK; tetratricopeptide 97.4 0.022 7.7E-07 48.8 18.4 151 66-229 182-353 (452)
177 2l6j_A TPR repeat-containing p 97.3 0.0015 5E-08 43.7 8.3 65 127-192 3-67 (111)
178 1klx_A Cysteine rich protein B 97.3 0.025 8.5E-07 40.0 15.5 113 106-230 9-129 (138)
179 1klx_A Cysteine rich protein B 97.3 0.0056 1.9E-07 43.5 11.3 113 73-194 8-128 (138)
180 2c2l_A CHIP, carboxy terminus 97.2 0.0089 3E-07 47.8 13.5 93 62-156 6-100 (281)
181 4g1t_A Interferon-induced prot 97.2 0.016 5.4E-07 49.3 15.7 151 74-227 227-401 (472)
182 1ihg_A Cyclophilin 40; ppiase 97.2 0.0098 3.3E-07 49.8 13.6 100 128-228 223-337 (370)
183 1wao_1 Serine/threonine protei 97.2 0.002 7E-08 55.9 9.7 114 70-187 16-134 (477)
184 2hr2_A Hypothetical protein; a 97.1 0.013 4.3E-07 42.9 12.1 62 165-226 59-130 (159)
185 1kt0_A FKBP51, 51 kDa FK506-bi 97.1 0.013 4.6E-07 50.4 14.3 97 128-227 268-380 (457)
186 2if4_A ATFKBP42; FKBP-like, al 97.1 0.0012 4.2E-08 54.5 7.4 94 130-226 232-327 (338)
187 2hr2_A Hypothetical protein; a 97.1 0.024 8.3E-07 41.4 13.1 108 99-206 18-150 (159)
188 2kat_A Uncharacterized protein 97.0 0.014 4.8E-07 39.4 10.7 79 110-191 3-81 (115)
189 3qww_A SET and MYND domain-con 96.9 0.011 3.6E-07 50.8 11.8 87 140-226 310-410 (433)
190 3qwp_A SET and MYND domain-con 96.9 0.016 5.5E-07 49.5 12.9 92 134-225 293-398 (429)
191 3e4b_A ALGK; tetratricopeptide 96.9 0.14 4.6E-06 43.9 18.7 119 97-225 181-314 (452)
192 1na3_A Designed protein CTPR2; 96.9 0.023 7.9E-07 36.1 10.9 63 128-191 9-71 (91)
193 3mkq_A Coatomer beta'-subunit; 96.9 0.028 9.5E-07 51.4 15.1 104 100-225 660-763 (814)
194 2kat_A Uncharacterized protein 96.8 0.029 9.9E-07 37.7 11.3 80 146-227 3-82 (115)
195 3qww_A SET and MYND domain-con 96.8 0.016 5.6E-07 49.6 11.6 88 104-191 310-410 (433)
196 3ma5_A Tetratricopeptide repea 96.7 0.01 3.5E-07 39.3 8.4 64 127-191 6-69 (100)
197 3qwp_A SET and MYND domain-con 96.7 0.015 5E-07 49.8 11.3 94 97-190 292-398 (429)
198 2if4_A ATFKBP42; FKBP-like, al 96.7 0.011 3.6E-07 48.8 10.1 96 129-227 180-293 (338)
199 3ma5_A Tetratricopeptide repea 96.5 0.022 7.5E-07 37.6 8.9 65 162-227 6-70 (100)
200 2uy1_A Cleavage stimulation fa 96.5 0.17 6E-06 43.9 16.9 28 62-89 215-242 (493)
201 1na3_A Designed protein CTPR2; 96.4 0.076 2.6E-06 33.5 10.6 66 162-228 8-73 (91)
202 2l6j_A TPR repeat-containing p 96.3 0.082 2.8E-06 34.7 10.6 67 161-228 2-68 (111)
203 1zu2_A Mitochondrial import re 95.8 0.081 2.8E-06 38.5 9.4 101 103-209 13-135 (158)
204 3dra_A Protein farnesyltransfe 95.8 0.58 2E-05 37.9 17.3 159 74-236 124-298 (306)
205 3mkq_B Coatomer subunit alpha; 95.6 0.48 1.6E-05 35.0 14.3 129 68-224 13-141 (177)
206 1wy6_A Hypothetical protein ST 95.3 0.48 1.6E-05 33.6 13.9 84 141-230 74-157 (172)
207 1dce_A Protein (RAB geranylger 95.3 1.4 5E-05 38.8 20.4 168 65-236 33-231 (567)
208 3ly7_A Transcriptional activat 95.2 0.59 2E-05 38.9 13.3 66 160-227 274-339 (372)
209 2kc7_A BFR218_protein; tetratr 95.1 0.2 7E-06 32.2 8.7 54 101-156 9-63 (99)
210 2kc7_A BFR218_protein; tetratr 95.0 0.23 8E-06 31.9 8.8 56 135-192 7-64 (99)
211 3ly7_A Transcriptional activat 94.9 1.3 4.3E-05 36.9 14.8 75 125-203 274-348 (372)
212 2v5f_A Prolyl 4-hydroxylase su 94.7 0.3 1E-05 32.4 8.8 64 128-191 5-74 (104)
213 1zu2_A Mitochondrial import re 94.6 0.14 4.9E-06 37.2 7.3 97 140-239 14-132 (158)
214 1pc2_A Mitochondria fission pr 94.5 0.81 2.8E-05 32.9 11.0 86 108-198 14-104 (152)
215 2uy1_A Cleavage stimulation fa 94.0 0.8 2.7E-05 39.7 12.2 77 107-190 335-411 (493)
216 3dra_A Protein farnesyltransfe 93.9 2.1 7.1E-05 34.6 21.6 163 62-230 34-218 (306)
217 2ff4_A Probable regulatory pro 93.8 0.41 1.4E-05 40.2 9.7 69 132-201 175-248 (388)
218 4h7y_A Dual specificity protei 93.7 1.3 4.6E-05 31.8 11.5 112 127-240 12-136 (161)
219 3mkq_A Coatomer beta'-subunit; 93.7 0.23 7.9E-06 45.2 8.6 132 67-222 606-747 (814)
220 1pc2_A Mitochondria fission pr 93.5 1 3.5E-05 32.4 9.9 84 143-228 13-101 (152)
221 3mkq_B Coatomer subunit alpha; 93.0 2 7E-05 31.7 12.5 109 94-224 7-115 (177)
222 2ff4_A Probable regulatory pro 92.6 1.2 3.9E-05 37.4 10.7 117 126-243 110-255 (388)
223 1wy6_A Hypothetical protein ST 92.2 1.7 5.7E-05 30.9 9.1 119 70-195 17-157 (172)
224 3bee_A Putative YFRE protein; 92.0 1.6 5.6E-05 28.2 10.1 65 126-192 4-72 (93)
225 3u64_A Protein TP_0956; tetrat 92.0 1.6 5.4E-05 35.1 10.0 112 128-243 154-288 (301)
226 2v5f_A Prolyl 4-hydroxylase su 91.9 1.7 6E-05 28.5 10.6 67 161-227 3-75 (104)
227 2nsz_A Programmed cell death p 91.4 2.3 7.9E-05 29.5 9.4 23 132-154 11-33 (129)
228 3u64_A Protein TP_0956; tetrat 91.0 3.5 0.00012 33.1 11.1 92 108-204 179-283 (301)
229 3rjo_A Endoplasmic reticulum a 91.0 6.4 0.00022 33.2 16.4 152 66-225 203-371 (419)
230 1v54_E Cytochrome C oxidase po 90.7 2.6 8.8E-05 28.0 8.4 63 143-206 25-87 (109)
231 1nzn_A CGI-135 protein, fissio 90.6 2.3 8E-05 29.4 8.6 95 99-198 8-107 (126)
232 4gns_B Protein CSD3, chitin bi 89.4 7.8 0.00027 35.5 13.4 124 97-225 253-398 (754)
233 2ion_A PDCD4, programmed cell 87.9 3 0.0001 29.9 7.9 22 97-118 14-35 (152)
234 3dss_A Geranylgeranyl transfer 87.8 10 0.00034 31.0 21.3 156 66-227 35-222 (331)
235 2y69_E Cytochrome C oxidase su 87.7 4.8 0.00017 28.3 8.4 62 143-205 68-129 (152)
236 4h7y_A Dual specificity protei 87.7 6.2 0.00021 28.4 10.5 97 62-161 15-127 (161)
237 3q7a_A Farnesyltransferase alp 87.3 11 0.00038 31.0 20.9 159 66-230 59-240 (349)
238 1dce_A Protein (RAB geranylger 86.8 16 0.00054 32.2 15.7 119 107-230 44-176 (567)
239 3bee_A Putative YFRE protein; 86.5 4.8 0.00016 25.9 11.1 65 162-228 5-73 (93)
240 4b4t_P 26S proteasome regulato 86.0 9.7 0.00033 32.4 11.4 152 74-225 30-204 (445)
241 1v54_E Cytochrome C oxidase po 85.9 5.8 0.0002 26.3 9.1 53 178-230 25-78 (109)
242 4fhn_B Nucleoporin NUP120; pro 85.1 6.4 0.00022 37.8 10.8 69 166-234 902-974 (1139)
243 3txn_A 26S proteasome regulato 85.0 16 0.00055 30.6 16.8 163 62-225 21-208 (394)
244 1nzn_A CGI-135 protein, fissio 83.8 6.9 0.00024 27.0 7.7 87 139-227 12-103 (126)
245 4gns_B Protein CSD3, chitin bi 83.2 9 0.00031 35.1 10.3 122 66-189 254-397 (754)
246 3ffl_A Anaphase-promoting comp 81.8 13 0.00043 27.1 9.1 63 57-119 17-90 (167)
247 4fke_A Aminopeptidase N; zinc 81.6 35 0.0012 32.0 15.1 140 66-211 692-844 (909)
248 1k1a_A B-cell lymphoma 3-encod 79.5 3.8 0.00013 30.8 5.8 83 67-154 13-102 (241)
249 3eiq_C Programmed cell death p 79.4 12 0.00043 30.8 9.1 106 130-236 219-334 (358)
250 4fhn_B Nucleoporin NUP120; pro 79.3 43 0.0015 32.2 14.1 142 67-214 819-987 (1139)
251 3se6_A Endoplasmic reticulum a 79.2 44 0.0015 31.6 16.5 155 66-228 754-925 (967)
252 4b4t_R RPN7, 26S proteasome re 79.0 14 0.00048 31.2 9.7 96 129-226 132-236 (429)
253 2xdt_A Endoplasmic reticulum a 77.5 47 0.0016 31.0 18.0 151 66-224 686-853 (897)
254 2zu6_B Programmed cell death p 75.0 13 0.00046 29.9 8.0 107 130-237 168-284 (307)
255 2y69_E Cytochrome C oxidase su 74.9 19 0.00066 25.3 10.0 53 178-230 68-121 (152)
256 4b4t_R RPN7, 26S proteasome re 73.2 41 0.0014 28.3 13.3 94 63-156 134-236 (429)
257 2d2s_A Exocyst complex compone 71.4 32 0.0011 26.4 9.3 91 98-191 24-119 (235)
258 3q7a_A Farnesyltransferase alp 70.7 43 0.0015 27.4 15.8 122 105-230 67-199 (349)
259 2uwj_G Type III export protein 70.7 20 0.00069 23.7 6.8 76 107-193 21-98 (115)
260 2p58_C Putative type III secre 70.2 21 0.00071 23.7 7.6 77 106-193 21-99 (116)
261 2ion_A PDCD4, programmed cell 69.6 27 0.00093 24.8 8.4 107 130-237 11-127 (152)
262 3o48_A Mitochondria fission 1 68.6 27 0.00092 24.3 9.3 72 125-198 37-111 (134)
263 4a1g_A Mitotic checkpoint seri 67.2 31 0.0011 24.6 7.9 57 180-236 82-139 (152)
264 2fe3_A Peroxide operon regulat 67.1 17 0.00059 25.4 6.3 58 85-143 12-71 (145)
265 2uwj_G Type III export protein 67.1 24 0.00084 23.3 7.1 89 141-239 19-110 (115)
266 2wvi_A Mitotic checkpoint seri 66.9 24 0.00083 25.5 7.0 51 147-197 79-130 (164)
267 2xig_A Ferric uptake regulatio 66.8 17 0.00056 25.7 6.2 60 84-144 16-77 (150)
268 2p58_C Putative type III secre 66.5 25 0.00087 23.3 7.8 89 141-239 20-111 (116)
269 2rg8_A Programmed cell death p 64.7 13 0.00045 26.9 5.3 23 97-119 15-37 (165)
270 3hra_A Ankyrin repeat family p 64.1 9 0.00031 27.8 4.5 14 183-196 158-171 (201)
271 2nsz_A Programmed cell death p 62.8 34 0.0012 23.4 9.7 64 97-162 12-77 (129)
272 1mzb_A Ferric uptake regulatio 61.2 16 0.00054 25.3 5.1 57 86-143 9-68 (136)
273 3ffl_A Anaphase-promoting comp 60.1 46 0.0016 24.1 9.9 58 97-154 25-89 (167)
274 1zbp_A Hypothetical protein VP 59.0 40 0.0014 26.6 7.4 116 99-226 4-128 (273)
275 2fu4_A Ferric uptake regulatio 58.3 29 0.001 21.2 6.6 59 153-212 7-66 (83)
276 3t8k_A Uncharacterized protein 58.0 13 0.00043 27.2 4.4 160 67-231 10-184 (186)
277 2w57_A Ferric uptake regulatio 57.1 19 0.00066 25.4 5.0 57 86-143 8-67 (150)
278 3eyy_A Putative iron uptake re 56.4 17 0.00058 25.5 4.6 55 86-142 10-66 (145)
279 3esl_A Checkpoint serine/threo 55.6 63 0.0021 24.2 10.3 75 123-197 72-149 (202)
280 4ets_A Ferric uptake regulatio 55.4 28 0.00095 25.0 5.7 66 78-144 15-85 (162)
281 3dss_A Geranylgeranyl transfer 55.0 83 0.0028 25.4 16.7 129 99-232 36-179 (331)
282 3aji_A 26S proteasome non-ATPa 54.7 19 0.00063 26.7 4.9 17 68-84 11-27 (231)
283 4aez_C MAD3, mitotic spindle c 54.7 46 0.0016 25.4 7.0 53 180-232 131-184 (223)
284 3bu8_A Telomeric repeat-bindin 54.5 35 0.0012 26.0 6.0 42 78-119 90-141 (235)
285 2keb_A DNA polymerase subunit 54.3 42 0.0015 21.9 7.1 56 147-204 28-88 (101)
286 1zbp_A Hypothetical protein VP 53.3 40 0.0014 26.6 6.6 115 67-191 4-128 (273)
287 1y8m_A FIS1; mitochondria, unk 52.5 58 0.002 22.9 11.2 71 125-198 36-110 (144)
288 3l6a_A Eukaryotic translation 52.3 45 0.0015 27.5 7.1 75 97-176 17-96 (364)
289 1zl8_A LIN-7; heterodimer, alp 50.8 21 0.00072 20.1 3.3 29 213-241 8-36 (53)
290 3esl_A Checkpoint serine/threo 50.6 76 0.0026 23.7 11.8 78 159-236 73-153 (202)
291 3eyy_A Putative iron uptake re 50.3 58 0.002 22.6 6.6 57 154-212 10-66 (145)
292 3mwm_A ZUR, putative metal upt 50.3 16 0.00054 25.5 3.6 56 87-143 6-63 (139)
293 2d2s_A Exocyst complex compone 49.9 84 0.0029 24.0 8.8 90 63-156 21-119 (235)
294 2fu4_A Ferric uptake regulatio 49.6 32 0.0011 21.1 4.7 31 147-177 36-66 (83)
295 1k1a_A B-cell lymphoma 3-encod 49.4 20 0.00069 26.6 4.4 125 97-232 11-143 (241)
296 3ljn_A Hypothetical protein; a 48.6 43 0.0015 26.8 6.5 93 62-163 19-116 (364)
297 2dod_A Transcription elongatio 46.4 23 0.00078 22.3 3.5 34 108-142 16-49 (82)
298 3hra_A Ankyrin repeat family p 46.1 17 0.00058 26.2 3.4 154 67-232 9-172 (201)
299 2rfa_A Transient receptor pote 46.0 55 0.0019 24.0 6.4 152 67-231 7-184 (232)
300 1wty_A Hypothetical protein TT 45.8 57 0.0019 21.8 5.8 75 108-190 4-79 (119)
301 2qq8_A TBC1 domain family memb 45.3 22 0.00074 28.9 4.1 90 150-240 215-307 (334)
302 1wdy_A 2-5A-dependent ribonucl 44.9 26 0.00088 26.6 4.5 85 134-222 151-240 (285)
303 3eiq_C Programmed cell death p 44.4 1.3E+02 0.0045 24.7 12.2 73 164-237 218-293 (358)
304 4g8k_A 2-5A-dependent ribonucl 43.6 46 0.0016 26.3 5.9 145 67-233 172-329 (337)
305 4g8k_A 2-5A-dependent ribonucl 43.4 41 0.0014 26.6 5.6 118 99-232 172-300 (337)
306 1qsa_A Protein (soluble lytic 42.5 1.8E+02 0.0063 25.8 11.9 115 107-226 229-347 (618)
307 2qfz_A TBC1 domain family memb 42.2 94 0.0032 25.1 7.6 78 150-227 231-315 (345)
308 4ets_A Ferric uptake regulatio 41.9 69 0.0023 22.8 6.0 23 135-157 39-61 (162)
309 2y1l_E Darpin-8.4; hydrolase-i 41.8 54 0.0018 22.8 5.5 134 67-218 18-163 (169)
310 2rg8_A Programmed cell death p 41.6 37 0.0013 24.4 4.5 27 130-156 12-38 (165)
311 2xig_A Ferric uptake regulatio 41.4 88 0.003 21.8 7.2 58 154-212 18-75 (150)
312 3bqo_A Telomeric repeat-bindin 41.4 38 0.0013 25.3 4.5 20 98-117 123-142 (211)
313 2chq_A Replication factor C sm 41.3 1.2E+02 0.0042 23.4 13.5 81 158-241 178-271 (319)
314 1mzb_A Ferric uptake regulatio 41.3 83 0.0028 21.5 7.0 57 122-179 12-69 (136)
315 3t8k_A Uncharacterized protein 40.9 73 0.0025 22.9 6.2 128 100-232 11-148 (186)
316 3ygs_P Procaspase 9; apoptosis 40.8 46 0.0016 21.4 4.5 64 81-149 25-89 (97)
317 1uzc_A Hypothetical protein FL 40.7 26 0.0009 21.3 3.0 33 108-141 14-46 (71)
318 4aez_C MAD3, mitotic spindle c 40.6 1E+02 0.0034 23.5 6.9 72 123-197 112-184 (223)
319 1wdy_A 2-5A-dependent ribonucl 40.5 40 0.0014 25.5 5.0 115 65-197 7-132 (285)
320 1sxj_E Activator 1 40 kDa subu 40.5 1.4E+02 0.0047 23.8 9.8 95 145-241 196-306 (354)
321 2yru_A Steroid receptor RNA ac 40.2 83 0.0028 21.2 5.8 42 150-191 48-89 (118)
322 2o03_A Probable zinc uptake re 39.7 33 0.0011 23.4 3.8 46 97-143 15-60 (131)
323 2w57_A Ferric uptake regulatio 39.7 94 0.0032 21.7 6.7 35 144-178 33-67 (150)
324 1ug3_A EIF4GI, eukaryotic prot 39.6 23 0.0008 28.8 3.5 63 96-160 15-78 (339)
325 1iqp_A RFCS; clamp loader, ext 39.4 1.3E+02 0.0046 23.3 13.4 95 144-241 171-279 (327)
326 3m6y_A 4-hydroxy-2-oxoglutarat 38.6 10 0.00034 29.4 1.0 84 144-227 170-270 (275)
327 4gpm_A Engineered protein OR26 37.9 83 0.0028 22.2 6.0 129 70-217 11-152 (169)
328 2yru_A Steroid receptor RNA ac 37.3 94 0.0032 21.0 8.5 41 186-226 49-89 (118)
329 2o03_A Probable zinc uptake re 36.8 66 0.0023 21.8 5.1 41 137-177 19-59 (131)
330 2fe3_A Peroxide operon regulat 36.6 1E+02 0.0036 21.2 8.2 58 154-212 13-70 (145)
331 4fke_A Aminopeptidase N; zinc 36.3 2.7E+02 0.0093 26.0 12.3 94 98-196 692-792 (909)
332 3kea_A K1L; tropism, ANK repea 36.2 94 0.0032 23.9 6.5 42 67-112 35-79 (285)
333 2mys_C Myosin; muscle protein, 36.0 94 0.0032 20.6 11.3 10 214-223 120-129 (149)
334 2b7e_A PRE-mRNA processing pro 36.0 18 0.0006 21.3 1.6 32 180-212 3-36 (59)
335 1oai_A Nuclear RNA export fact 35.9 22 0.00075 20.8 2.0 25 104-128 32-56 (59)
336 3eu9_A Huntingtin-interacting 35.9 77 0.0026 23.1 5.8 18 204-221 180-197 (240)
337 3m0z_A Putative aldolase; MCSG 35.3 9.3 0.00032 29.2 0.4 83 144-226 147-246 (249)
338 3mwm_A ZUR, putative metal upt 34.7 56 0.0019 22.5 4.4 46 134-179 19-64 (139)
339 3twr_A Tankyrase-2; ankyrin re 34.6 34 0.0012 23.6 3.4 17 67-83 12-28 (165)
340 2jp7_A MRNA export factor MEX6 34.5 16 0.00055 21.2 1.3 22 213-235 34-55 (57)
341 2f6m_A Suppressor protein STP2 34.5 67 0.0023 19.2 4.0 44 166-210 5-48 (65)
342 3qye_A TBC1 domain family memb 34.4 56 0.0019 26.2 5.0 75 149-223 209-287 (331)
343 4a1g_A Mitotic checkpoint seri 33.5 1.3E+02 0.0043 21.3 9.9 71 124-197 64-135 (152)
344 2xai_A ASB-9, ankyrin repeat a 33.2 82 0.0028 23.8 5.6 11 99-109 40-50 (261)
345 1z5h_A Tricorn protease intera 33.1 1.1E+02 0.0037 28.0 7.2 98 67-174 593-693 (780)
346 3f3f_C Nucleoporin NUP85; stru 32.9 1.3E+02 0.0045 26.4 7.2 48 97-147 521-568 (570)
347 4gq2_M Nucleoporin NUP120; bet 32.9 2.8E+02 0.0094 26.1 10.0 111 97-226 815-925 (950)
348 4b4t_S RPN3, 26S proteasome re 32.6 2.5E+02 0.0085 24.4 9.1 28 128-155 231-258 (523)
349 1rw2_A ATP-dependent DNA helic 32.1 28 0.00097 24.8 2.5 33 107-139 73-105 (152)
350 1sxj_D Activator 1 41 kDa subu 32.1 1.9E+02 0.0064 22.8 10.7 96 143-241 193-307 (353)
351 3f3f_C Nucleoporin NUP85; stru 31.4 2.4E+02 0.0081 24.8 8.5 53 163-217 516-568 (570)
352 2rfa_A Transient receptor pote 31.0 1.1E+02 0.0036 22.3 5.9 146 67-226 41-222 (232)
353 1s6c_A KV4 potassium channel-i 30.6 1.4E+02 0.0047 20.8 8.0 114 107-222 54-180 (183)
354 3kea_A K1L; tropism, ANK repea 30.4 85 0.0029 24.2 5.4 108 67-188 66-183 (285)
355 3f6q_A Integrin-linked protein 29.8 56 0.0019 22.9 3.9 114 67-197 9-132 (179)
356 1bpo_A Protein (clathrin); cla 29.3 2.7E+02 0.0094 23.9 10.6 96 123-220 356-451 (494)
357 2rfm_A Putative ankyrin repeat 29.2 1.3E+02 0.0046 21.1 6.0 138 67-222 39-188 (192)
358 2f8y_A Notch homolog 1, transl 29.1 63 0.0022 23.4 4.2 140 67-222 29-179 (223)
359 2etb_A Transient receptor pote 28.9 60 0.002 24.3 4.2 152 67-229 6-205 (256)
360 1bd8_A P19INK4D CDK4/6 inhibit 28.8 36 0.0012 23.2 2.6 139 67-222 6-154 (156)
361 3jxi_A Vanilloid receptor-rela 28.1 54 0.0018 24.6 3.8 19 204-222 143-161 (260)
362 2wpv_A GET4, UPF0363 protein Y 28.0 2.3E+02 0.0079 22.6 15.9 146 67-217 20-187 (312)
363 4b4t_P 26S proteasome regulato 27.9 2.7E+02 0.0092 23.3 18.4 164 63-226 59-246 (445)
364 2hpi_A DNA polymerase III alph 27.9 4.3E+02 0.015 25.7 10.4 85 144-230 759-867 (1220)
365 1q2z_A ATP-dependent DNA helic 27.6 86 0.0029 21.1 4.2 33 107-139 42-74 (120)
366 3v30_A DNA-binding protein rfx 27.5 91 0.0031 21.5 4.7 146 67-226 6-160 (172)
367 3e3v_A Regulatory protein RECX 27.5 1.7E+02 0.0059 21.0 9.8 54 107-162 48-101 (177)
368 3pvs_A Replication-associated 27.4 2.8E+02 0.0095 23.3 9.2 32 210-241 267-298 (447)
369 3eu9_A Huntingtin-interacting 27.3 81 0.0028 23.0 4.6 130 67-214 13-156 (240)
370 3hzj_A Rabgap1L, RAB GTPase-ac 27.1 1.8E+02 0.0061 22.9 6.8 45 150-194 176-220 (310)
371 2wvi_A Mitotic checkpoint seri 26.8 1.8E+02 0.006 20.9 10.5 57 180-236 77-134 (164)
372 3b7b_A Euchromatic histone-lys 26.1 76 0.0026 23.3 4.2 44 67-114 15-63 (237)
373 3bu8_A Telomeric repeat-bindin 24.4 2.3E+02 0.008 21.5 11.8 22 170-191 121-142 (235)
374 3bge_A Predicted ATPase; struc 24.1 2.2E+02 0.0077 21.1 8.0 61 134-194 10-78 (201)
375 2zu6_B Programmed cell death p 23.8 2.8E+02 0.0095 22.1 12.8 72 165-237 168-242 (307)
376 4ady_A RPN2, 26S proteasome re 23.7 4.7E+02 0.016 24.7 10.4 54 137-191 569-622 (963)
377 2qx5_A Nucleoporin NIC96; mRNA 23.5 4E+02 0.014 23.9 9.8 32 128-162 533-569 (661)
378 1b79_A DNAB helicase; hexamer, 23.2 1.7E+02 0.0058 19.4 8.5 23 88-110 67-89 (119)
379 2ve8_A FTSK, DNA translocase F 23.1 1.4E+02 0.0046 18.3 4.0 43 144-195 12-54 (73)
380 3pvs_A Replication-associated 23.1 3.4E+02 0.011 22.8 10.9 56 175-230 267-327 (447)
381 1fsh_A Dishevelled-1; three-he 22.8 1.7E+02 0.0056 19.1 5.0 34 161-194 48-85 (105)
382 3qil_A Clathrin heavy chain 1; 22.6 1E+02 0.0035 21.0 3.7 52 131-185 35-86 (125)
383 3r88_A Anthranilate phosphorib 22.1 2.4E+02 0.0083 23.2 6.7 63 128-191 23-87 (377)
384 3v31_A Ankyrin repeat family A 22.0 1.7E+02 0.0059 19.8 5.3 142 67-226 7-160 (167)
385 1sxj_C Activator 1 40 kDa subu 21.7 3E+02 0.01 21.7 12.0 41 200-241 243-284 (340)
386 2etb_A Transient receptor pote 21.7 44 0.0015 25.1 2.1 118 98-222 5-157 (256)
387 1n11_A Ankyrin; clathrin, BAND 21.7 1.5E+02 0.0051 24.2 5.6 46 67-116 18-68 (437)
388 2r9g_A AAA ATPase, central reg 21.7 2.6E+02 0.0087 20.9 9.4 61 134-195 17-85 (204)
389 1awc_B Protein (GA binding pro 21.6 1.9E+02 0.0064 19.3 5.4 18 67-84 6-23 (153)
390 2dzn_A Probable 26S proteasome 21.6 26 0.00089 25.7 0.7 17 68-84 7-23 (228)
391 3rjo_A Endoplasmic reticulum a 21.5 3.4E+02 0.012 22.3 14.7 93 97-196 202-301 (419)
392 2e2a_A Protein (enzyme IIA); h 20.5 73 0.0025 21.0 2.6 18 209-226 31-48 (105)
393 3kae_A CDC27, possible protein 20.3 2.6E+02 0.0091 20.6 7.5 80 102-188 43-139 (242)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.6e-35 Score=260.37 Aligned_cols=180 Identities=13% Similarity=0.092 Sum_probs=171.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcCcccHH---HHHHHHHHcCC---------HHHHHHHHHHHHHhCCCCCCHHHH
Q 025612 64 IQAVHAMKLAKSSSKLEEGFQSRICRLLKADLL---DTLTELRRQNE---------LDLALKVFNFVRKEVWYKPDLSLY 131 (250)
Q Consensus 64 ~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~---~ll~~~~~~~~---------~~~a~~~~~~m~~~~g~~~~~~~y 131 (250)
..+|.+|++.|++++|+++|++|.+.|+.||.. +||.+|++.+. ++.|.++|++|.+ .|+.||..||
T Consensus 30 ~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~-~G~~Pd~~ty 108 (501)
T 4g26_A 30 KQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV-DKVVPNEATF 108 (501)
T ss_dssp HHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH-TTCCCCHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH-hCCCCCHHHH
Confidence 356999999999999999999999999999987 69999998765 7899999999974 9999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 025612 132 SDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211 (250)
Q Consensus 132 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 211 (250)
|+||++|++.|++++|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++||++|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhccCCchHHHHHHHHhhhc
Q 025612 212 GEEELVAAVRRDCIQYVEFPERFLEEVYQKHRK 244 (250)
Q Consensus 212 g~~~~a~~~~~~m~~~g~~pd~~~~~~~~~~~~ 244 (250)
|++++|.+++++|++.|+.|+..++.+....+.
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 999999999999999999999999987766553
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=6.7e-31 Score=230.97 Aligned_cols=162 Identities=13% Similarity=0.165 Sum_probs=138.0
Q ss_pred hHHHHHHHHHHHhcCc--ccHH--HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC---------
Q 025612 77 SKLEEGFQSRICRLLK--ADLL--DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ--------- 143 (250)
Q Consensus 77 ~~a~~l~~~m~~~~~~--~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~--------- 143 (250)
..+..+.+++.+.+.. |+.. .+|++|++.|++++|.++|++|.+ .|+.||..|||+||++|++.+.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~-~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARR-NGVQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 4566677777776654 4432 689999999999999999999975 8999999999999999998765
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 025612 144 IAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223 (250)
Q Consensus 144 ~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~ 223 (250)
+++|.++|++|...|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCchHHHHHHH
Q 025612 224 CIQYVEFPERFLEEVY 239 (250)
Q Consensus 224 m~~~g~~pd~~~~~~~ 239 (250)
|.+.|+.||..+|..-
T Consensus 166 M~~~G~~Pd~~ty~~L 181 (501)
T 4g26_A 166 MVESEVVPEEPELAAL 181 (501)
T ss_dssp HHHTTCCCCHHHHHHH
T ss_pred HHhcCCCCCHHHHHHH
Confidence 9999999999988844
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.90 E-value=1.4e-23 Score=192.01 Aligned_cols=116 Identities=16% Similarity=0.161 Sum_probs=89.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 025612 97 DTLTELRRQNELDLALKVFNFVRK--EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYL 174 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~--~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~ 174 (250)
++|++||+.|++++|.++|++|.+ ..|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||.+|||+||.+++
T Consensus 132 aLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glc 211 (1134)
T 3spa_A 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG 211 (1134)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 688888888888888888877642 246778888888888888888888888888888888888888888888888888
Q ss_pred hcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 025612 175 QVGMI-DKAMETYETMKASGCTPHKLTFTILIRNLENAG 212 (250)
Q Consensus 175 ~~g~~-~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 212 (250)
+.|+. ++|.++|++|.+.|+.||..||+++++++.+.+
T Consensus 212 K~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 212 RQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH
Confidence 87764 677788888888888888888888777666543
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.90 E-value=2.6e-24 Score=196.74 Aligned_cols=116 Identities=9% Similarity=0.068 Sum_probs=108.2
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 025612 122 VWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKK---EGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK 198 (250)
Q Consensus 122 ~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~---~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 198 (250)
....--..|||+||++||++|++++|.++|++|.+ +|+.||.+|||+||.+||+.|++++|.++|++|++.|+.||.
T Consensus 121 ~~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDv 200 (1134)
T 3spa_A 121 AQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200 (1134)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH
T ss_pred hHHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH
Confidence 33444578999999999999999999999998864 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHHhccCCchHHHHH
Q 025612 199 LTFTILIRNLENAGE-EELVAAVRRDCIQYVEFPERFLEE 237 (250)
Q Consensus 199 ~ty~~li~~~~~~g~-~~~a~~~~~~m~~~g~~pd~~~~~ 237 (250)
+|||+||+++++.|+ .+.|.++|++|.+.|+.||..+|.
T Consensus 201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~ 240 (1134)
T 3spa_A 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTA 240 (1134)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcc
Confidence 999999999999998 588999999999999999999998
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.63 E-value=8.3e-14 Score=123.91 Aligned_cols=164 Identities=9% Similarity=-0.003 Sum_probs=112.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhcCc-c-cHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 025612 62 EAIQAVHAMKLAKSSSKLEEGFQSRICRLLK-A-DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139 (250)
Q Consensus 62 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~ 139 (250)
....+...+.+.|++++|.++|+++.+..-. + ....+...+.+.|++++|.++|+++.+ .+ +.+..+|+.+..+|.
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR-LF-QGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-ccchHHHHHHHHHHH
Confidence 3344567777777777777777777653211 1 112577777777777777777777754 22 336677777777777
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCC
Q 025612 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS----GCTPH--KLTFTILIRNLENAGE 213 (250)
Q Consensus 140 ~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~ty~~li~~~~~~g~ 213 (250)
+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|+
T Consensus 453 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 7777777777777776542 235677777777777777777777777777654 56676 6677777777777777
Q ss_pred HHHHHHHHHHHHhcc
Q 025612 214 EELVAAVRRDCIQYV 228 (250)
Q Consensus 214 ~~~a~~~~~~m~~~g 228 (250)
+++|.++++++.+.+
T Consensus 532 ~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 532 YDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhC
Confidence 777777777776654
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.62 E-value=1e-13 Score=123.36 Aligned_cols=165 Identities=11% Similarity=-0.098 Sum_probs=108.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 025612 64 IQAVHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141 (250)
Q Consensus 64 ~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~ 141 (250)
..++.++.+.|++++|..+++++.+.... +... .+...|.+.|++++|.++|+++.+. . +.+..+|+.++.+|.+.
T Consensus 343 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~ 420 (597)
T 2xpi_A 343 PLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM-D-PQFGPAWIGFAHSFAIE 420 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHc
Confidence 34466677777777777777777643211 1111 4667777777777777777777542 1 23466777777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 025612 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221 (250)
Q Consensus 142 ~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~ 221 (250)
|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|++|.+.. ..+..+|+.+...|.+.|++++|.++|
T Consensus 421 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 498 (597)
T 2xpi_A 421 GEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHF 498 (597)
T ss_dssp TCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 77777777777776542 3366777777777777777777777777776542 235677777777777777777777777
Q ss_pred HHHHhc----cCCch
Q 025612 222 RDCIQY----VEFPE 232 (250)
Q Consensus 222 ~~m~~~----g~~pd 232 (250)
+++.+. +..|+
T Consensus 499 ~~~~~~~~~~~~~p~ 513 (597)
T 2xpi_A 499 QNALLLVKKTQSNEK 513 (597)
T ss_dssp HHHHHHHHHSCCCSG
T ss_pred HHHHHhhhccccchh
Confidence 777655 55555
No 7
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.26 E-value=3.9e-09 Score=83.23 Aligned_cols=161 Identities=14% Similarity=-0.006 Sum_probs=117.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 025612 65 QAVHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNK 142 (250)
Q Consensus 65 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~ 142 (250)
.+...+...|++++|...|++..+..-. +... .+...+.+.|++++|.+.|++..+. . +.+...|..+...|...|
T Consensus 42 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~-~~~~~~~~~la~~~~~~g 119 (252)
T 2ho1_A 42 QLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS-D-SRNARVLNNYGGFLYEQK 119 (252)
T ss_dssp HHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-C-cCcHHHHHHHHHHHHHHh
Confidence 3466677788888888888887754321 1122 4667777888888888888887643 2 235777888888888888
Q ss_pred CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 025612 143 QIAMAEELFCELKKEGLDP-DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221 (250)
Q Consensus 143 ~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~ 221 (250)
++++|.+.|++....+..| +...|..+...|...|++++|...|++..+.. ..+...+..+...|...|++++|.+.+
T Consensus 120 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 198 (252)
T 2ho1_A 120 RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYY 198 (252)
T ss_dssp CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888877643445 45667777788888888888888888876643 225677788888888888888888888
Q ss_pred HHHHhcc
Q 025612 222 RDCIQYV 228 (250)
Q Consensus 222 ~~m~~~g 228 (250)
+...+..
T Consensus 199 ~~~~~~~ 205 (252)
T 2ho1_A 199 DLFAQGG 205 (252)
T ss_dssp HHHHTTS
T ss_pred HHHHHhC
Confidence 8877644
No 8
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.26 E-value=7.9e-09 Score=79.54 Aligned_cols=164 Identities=12% Similarity=-0.055 Sum_probs=126.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 025612 63 AIQAVHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK 140 (250)
Q Consensus 63 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~ 140 (250)
...+...+...|++++|...+++..+..-. +... .+...+...|++++|.+.|+...+. . +.+..+|..+...|..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~-~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI-K-PDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh-C-CCChHHHHHHHHHHHH
Confidence 334567778889999999999988764322 2222 5777788899999999999988653 2 3367788888899999
Q ss_pred C-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 025612 141 N-KQIAMAEELFCELKKEGLDPD-TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218 (250)
Q Consensus 141 ~-~~~~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~ 218 (250)
. |++++|...|+++.+.+..|+ ...|..+...|...|++++|...|+++.+.. ..+...+..+...+.+.|++++|.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 167 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDAD 167 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHH
Confidence 9 999999999998877433443 5778888888999999999999998887643 224778888888999999999999
Q ss_pred HHHHHHHhccC
Q 025612 219 AVRRDCIQYVE 229 (250)
Q Consensus 219 ~~~~~m~~~g~ 229 (250)
+.++...+..-
T Consensus 168 ~~~~~~~~~~~ 178 (225)
T 2vq2_A 168 YYFKKYQSRVE 178 (225)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhCC
Confidence 99988876543
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.24 E-value=3.7e-09 Score=88.96 Aligned_cols=127 Identities=13% Similarity=0.148 Sum_probs=88.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 176 (250)
.+...+.+.|++++|.+.|+.+.+ .. +.+..+|+.+...|.+.|++++|.+.|+++.+. .+.+..+|+.+...|.+.
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIE-LQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-TC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh-hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHc
Confidence 466667777777777777777764 21 224566777777777777777777777777654 244667777777777777
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 025612 177 GMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 177 g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
|++++|...|+++.+.. ..+..++..+...|.+.|++++|.+.++++.+.
T Consensus 319 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777777777776642 234667777777777777777777777777653
No 10
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.23 E-value=2.2e-09 Score=87.67 Aligned_cols=159 Identities=13% Similarity=0.163 Sum_probs=109.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCcccHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 025612 66 AVHAMKLAKSSSKLEEGFQSRICRLLKADLL----DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141 (250)
Q Consensus 66 ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~ 141 (250)
+...+...++.++|.+.++++...+..|+.. .+-..+...|++++|.+.++. ..+...+..+...|.+.
T Consensus 71 la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~ 143 (291)
T 3mkr_A 71 FAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKL 143 (291)
T ss_dssp HHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHC
Confidence 3556666788888888888887766545433 344667788888888888775 34677788888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 025612 142 KQIAMAEELFCELKKEGLDPDTRVY---TEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218 (250)
Q Consensus 142 ~~~~~A~~~~~~m~~~g~~p~~~ty---~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~ 218 (250)
|++++|.+.|+++.+. .|+...+ .+++..+...|++++|..+|+++.+. ...+...|+.+-.++.+.|++++|+
T Consensus 144 g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~ 220 (291)
T 3mkr_A 144 DRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAE 220 (291)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888765 3553211 12233334457888888888888765 3456777888888888888888888
Q ss_pred HHHHHHHhc-cCCchHH
Q 025612 219 AVRRDCIQY-VEFPERF 234 (250)
Q Consensus 219 ~~~~~m~~~-g~~pd~~ 234 (250)
+.+++..+. .-.|+.+
T Consensus 221 ~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 221 GVLQEALDKDSGHPETL 237 (291)
T ss_dssp HHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHhCCCCHHHH
Confidence 888886653 3334443
No 11
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.23 E-value=7e-09 Score=81.74 Aligned_cols=167 Identities=13% Similarity=0.086 Sum_probs=137.1
Q ss_pred cHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 025612 60 SSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKP-DLSLYSDMIL 136 (250)
Q Consensus 60 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~-~~~~y~~li~ 136 (250)
......+...+...|++++|...+++..+..-. +... .+...+...|++++|.++|+...+ .+..| +...|..+..
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~ 149 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGL 149 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHH
Confidence 334445677888999999999999998765422 2222 577888999999999999999864 33445 5778889999
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 025612 137 MLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216 (250)
Q Consensus 137 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 216 (250)
.|.+.|++++|...|++..+.. +.+...|..+...|...|++++|...|++..+.. ..+...+..+...+...|++++
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~ 227 (252)
T 2ho1_A 150 VSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDT 227 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHH
Confidence 9999999999999999987753 3358889999999999999999999999988753 3567888999999999999999
Q ss_pred HHHHHHHHHhccC
Q 025612 217 VAAVRRDCIQYVE 229 (250)
Q Consensus 217 a~~~~~~m~~~g~ 229 (250)
|.++++.+.+..-
T Consensus 228 A~~~~~~~~~~~p 240 (252)
T 2ho1_A 228 AASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCC
Confidence 9999999987643
No 12
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.21 E-value=7.4e-09 Score=80.87 Aligned_cols=193 Identities=10% Similarity=0.001 Sum_probs=140.2
Q ss_pred CCccceeeeeccccCCCcccc----ccCCCcHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCC
Q 025612 34 KKIQALTVTCGLRDANKKPMW----RSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNE 107 (250)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~ 107 (250)
..+...+...+....+...+. ..+........+...+...|++++|...+++..+..-. +... .+...+...|+
T Consensus 27 ~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 106 (243)
T 2q7f_A 27 GQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEM 106 (243)
T ss_dssp ---------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcc
Confidence 333334444555444443222 22333344445677888999999999999998765422 2222 57788889999
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 025612 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYE 187 (250)
Q Consensus 108 ~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~ 187 (250)
+++|.+.|+...+. . +.+...|..+...|.+.|++++|...|++..+.. +.+...|..+...|.+.|++++|.+.|+
T Consensus 107 ~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (243)
T 2q7f_A 107 YKEAKDMFEKALRA-G-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFA 183 (243)
T ss_dssp HHHHHHHHHHHHHH-T-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999998753 2 3467889999999999999999999999987642 3467889999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 025612 188 TMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEF 230 (250)
Q Consensus 188 ~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 230 (250)
+..+.. ..+..++..+...|...|++++|.+.++...+..-.
T Consensus 184 ~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 184 AVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 987753 235788999999999999999999999999875443
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.19 E-value=6.3e-09 Score=88.98 Aligned_cols=161 Identities=11% Similarity=-0.003 Sum_probs=100.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 025612 62 EAIQAVHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139 (250)
Q Consensus 62 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~ 139 (250)
....+...+.+.|++++|..+|+++.+..-. +... .+..++.+.|++++|...|+.+.+. + +.+...|..+...|.
T Consensus 28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~-p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 28 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL-K-MDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CCcHHHHHHHHHHHH
Confidence 4445567777778888888888877654211 1111 4666777778888888888777642 2 234667777777777
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHH------------HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 025612 140 KNKQIAMAEELFCELKKEGLDPDT----RVYTEMIG------------VYLQVGMIDKAMETYETMKASGCTPHKLTFTI 203 (250)
Q Consensus 140 ~~~~~~~A~~~~~~m~~~g~~p~~----~ty~~li~------------~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ 203 (250)
+.|++++|.+.|+++.+. .|+. ..|..++. .|.+.|++++|..+|+++.+.. ..+..++..
T Consensus 106 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 182 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELREL 182 (450)
T ss_dssp HTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 777777777777777653 3433 34444433 2666666666666666665532 224555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 025612 204 LIRNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 204 li~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
+..+|.+.|++++|.++++.+.+.
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~ 206 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKL 206 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh
Confidence 666666666666666666665543
No 14
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.17 E-value=1.8e-08 Score=84.75 Aligned_cols=156 Identities=12% Similarity=0.079 Sum_probs=100.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCC
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKP-DLSLYSDMILMLGKNKQ 143 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~-~~~~y~~li~~~~~~~~ 143 (250)
...+...|++++|...|+++.+..-. ++.. .+-..+...|++++|...|.+..+. .| +..+|+.+...|.+.|+
T Consensus 176 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~ 252 (388)
T 1w3b_A 176 GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL---SPNHAVVHGNLACVYYEQGL 252 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcCCHHHHHHHHHHHHHcCC
Confidence 33444444444444444444432110 0011 2344444555555555555554431 23 46777888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 025612 144 IAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRD 223 (250)
Q Consensus 144 ~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~ 223 (250)
+++|.+.|+++.+.+ +.+..+|+.+...|.+.|++++|.+.|+++.+.. ..+..+|..+...+.+.|++++|.+.+++
T Consensus 253 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (388)
T 1w3b_A 253 IDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRK 330 (388)
T ss_dssp HHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888877642 2246678888888888888888888888877652 44677888888888888888888888888
Q ss_pred HHhc
Q 025612 224 CIQY 227 (250)
Q Consensus 224 m~~~ 227 (250)
+.+.
T Consensus 331 al~~ 334 (388)
T 1w3b_A 331 ALEV 334 (388)
T ss_dssp HTTS
T ss_pred HHhc
Confidence 7664
No 15
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.17 E-value=2.3e-08 Score=76.88 Aligned_cols=166 Identities=10% Similarity=0.016 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHc-CCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 025612 61 SEAIQAVHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQ-NELDLALKVFNFVRKEVWYKPD-LSLYSDMIL 136 (250)
Q Consensus 61 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~-~~~~~a~~~~~~m~~~~g~~~~-~~~y~~li~ 136 (250)
.....+...+...|++++|...+++.....-. +... .+...+... |++++|...|+.+.+ .+..|+ ...|..+..
T Consensus 43 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~ 121 (225)
T 2vq2_A 43 LAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGI 121 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHH
Confidence 34445577888999999999999998765422 2222 577888899 999999999999975 333343 678899999
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 025612 137 MLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216 (250)
Q Consensus 137 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 216 (250)
.|...|++++|...|++..+.. +.+...|..+...|.+.|++++|..++++..+..-..+...+..+...+...|+.+.
T Consensus 122 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (225)
T 2vq2_A 122 CSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQA 200 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHH
Confidence 9999999999999999987752 235788999999999999999999999998775322477788888899999999999
Q ss_pred HHHHHHHHHhcc
Q 025612 217 VAAVRRDCIQYV 228 (250)
Q Consensus 217 a~~~~~~m~~~g 228 (250)
+..+++.+.+..
T Consensus 201 a~~~~~~~~~~~ 212 (225)
T 2vq2_A 201 AYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999987643
No 16
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.16 E-value=8.3e-09 Score=76.80 Aligned_cols=160 Identities=9% Similarity=0.003 Sum_probs=132.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 025612 64 IQAVHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141 (250)
Q Consensus 64 ~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~ 141 (250)
..+...+...|++++|...+++..+..-. +... .+...+...|++++|...++...+. .+.+...|..+...|...
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHh
Confidence 34567778889999999999987654221 2222 5778888999999999999998753 234688899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 025612 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221 (250)
Q Consensus 142 ~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~ 221 (250)
|++++|.+.|++.... .+.+...|..+...|...|++++|.+.+++..+.. ..+...+..+...+...|++++|.+.+
T Consensus 90 ~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp TCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998765 23477889999999999999999999999987753 346789999999999999999999999
Q ss_pred HHHHhc
Q 025612 222 RDCIQY 227 (250)
Q Consensus 222 ~~m~~~ 227 (250)
+...+.
T Consensus 168 ~~~~~~ 173 (186)
T 3as5_A 168 KKANEL 173 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 998754
No 17
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.15 E-value=1.1e-08 Score=87.58 Aligned_cols=164 Identities=15% Similarity=0.075 Sum_probs=134.4
Q ss_pred cHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC-H---HHHHH
Q 025612 60 SSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPD-L---SLYSD 133 (250)
Q Consensus 60 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~---~~y~~ 133 (250)
......+...+...|++++|...|+++.+.+-. +... .+...+.+.|++++|.+.|+.+.+ ..|+ . ..+..
T Consensus 60 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~~ 136 (450)
T 2y4t_A 60 YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK---SNPSENEEKEAQSQ 136 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCChhhHHHHHH
Confidence 344455688888999999999999999875422 2222 688899999999999999999974 2444 3 56666
Q ss_pred HHHH------------HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 025612 134 MILM------------LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF 201 (250)
Q Consensus 134 li~~------------~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty 201 (250)
+... |.+.|++++|...|+++.+. .+.+..++..+...|.+.|++++|.++|+++.+.. ..+..+|
T Consensus 137 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 214 (450)
T 2y4t_A 137 LIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAF 214 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 6444 88999999999999999874 23478899999999999999999999999997752 3468999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 025612 202 TILIRNLENAGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 202 ~~li~~~~~~g~~~~a~~~~~~m~~~g 228 (250)
..+...|...|++++|.+.++.+.+..
T Consensus 215 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 215 YKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999998653
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.14 E-value=3.8e-11 Score=102.56 Aligned_cols=175 Identities=11% Similarity=0.066 Sum_probs=61.3
Q ss_pred CCCCCCcCCCCCCCccceeeeeccccCCCccccccCCCcHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHH-HHHH
Q 025612 22 FHQRPQISLPSGKKIQALTVTCGLRDANKKPMWRSRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLL-DTLT 100 (250)
Q Consensus 22 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-~ll~ 100 (250)
+++.+.+ ..|..+.......+....+-....+..- ......++.++...|++++|...++...+..-.|.+. .++.
T Consensus 26 ae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika~D-~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~ 102 (449)
T 1b89_A 26 AERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKADD-PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIF 102 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHH
Confidence 4444333 4787777777777777666554444332 2255567888888899999999777665532222333 5888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 025612 101 ELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID 180 (250)
Q Consensus 101 ~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 180 (250)
+|.+.|+++++.++++ .|+..+|+.+-..|...|++++|...|..+ ..|..+..++++.|+++
T Consensus 103 ~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq 165 (449)
T 1b89_A 103 ALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQ 165 (449)
T ss_dssp ------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHH
T ss_pred HHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHH
Confidence 8899999888887774 256668888888888888888888888876 37888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 025612 181 KAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222 (250)
Q Consensus 181 ~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~ 222 (250)
+|.+.++.+ -++.||..++.+|...|+++.|.....
T Consensus 166 ~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l 201 (449)
T 1b89_A 166 AAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL 201 (449)
T ss_dssp HHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTT
T ss_pred HHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888877 267888888888888888888855443
No 19
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.13 E-value=4.4e-08 Score=76.14 Aligned_cols=161 Identities=11% Similarity=-0.029 Sum_probs=131.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 025612 62 EAIQAVHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139 (250)
Q Consensus 62 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~ 139 (250)
....+-..+.+.|++++|...|++..+..-. +... .+-..+.+.|++++|...|+...+. . +-+...|..+-..|.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-~-P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR-T-PRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-CCcHHHHHHHHHHHH
Confidence 4445567788899999999999998754321 2222 5777788999999999999998753 2 235778888889999
Q ss_pred cC-----------CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 025612 140 KN-----------KQIAMAEELFCELKKEGLDP-DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN 207 (250)
Q Consensus 140 ~~-----------~~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~ 207 (250)
+. |++++|...|++..+. .| +...|..+-..|...|++++|...|++..+.. .+...+..+-.+
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL 160 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence 99 9999999999988764 34 57788888899999999999999999988876 788899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcc
Q 025612 208 LENAGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 208 ~~~~g~~~~a~~~~~~m~~~g 228 (250)
|...|++++|.+.++...+..
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~ 181 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQA 181 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999987754
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.13 E-value=2.7e-08 Score=82.86 Aligned_cols=163 Identities=10% Similarity=0.002 Sum_probs=124.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 025612 63 AIQAVHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK 140 (250)
Q Consensus 63 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~ 140 (250)
.+.....+.+.|++++|..+|+++.+..-. +... .+...+.+.|++++|...|++..+. . +.+..+|..+...|.+
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL-Q-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CCCHHHHHHHHHHHHc
Confidence 555677788889999999999988764321 1222 5777888889999999999988753 1 3357788888888888
Q ss_pred CCCHHHHHHHHHHHHhCC------------------------------------------CCC---CHHHHHHHHHHHHh
Q 025612 141 NKQIAMAEELFCELKKEG------------------------------------------LDP---DTRVYTEMIGVYLQ 175 (250)
Q Consensus 141 ~~~~~~A~~~~~~m~~~g------------------------------------------~~p---~~~ty~~li~~~~~ 175 (250)
.|++++|...|+++.+.. ..| +..+|..+...|.+
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 888888888888765421 012 57788888888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 025612 176 VGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 176 ~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g 228 (250)
.|++++|.+.|++..+.. ..+..+|..+..+|.+.|++++|.+.++...+..
T Consensus 226 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 277 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ 277 (365)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999998887642 2357888888899999999999999988887653
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.11 E-value=5.8e-09 Score=86.96 Aligned_cols=169 Identities=9% Similarity=-0.079 Sum_probs=128.7
Q ss_pred CCCcHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHH--------------
Q 025612 57 RVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRK-------------- 120 (250)
Q Consensus 57 ~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~-------------- 120 (250)
+........+...+...|++++|...|++..+..-. +... .+...+.+.|++++|...|+.+.+
T Consensus 96 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 175 (365)
T 4eqf_A 96 PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKG 175 (365)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC------
T ss_pred cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhcc
Confidence 334444555677778888888888888887754321 1121 466666677777777776666542
Q ss_pred ------------------------------hCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 025612 121 ------------------------------EVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170 (250)
Q Consensus 121 ------------------------------~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li 170 (250)
...-.++..+|..+...|.+.|++++|.+.|++..+.. +.+..+|+.+.
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 254 (365)
T 4eqf_A 176 SPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLG 254 (365)
T ss_dssp -------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 11111168899999999999999999999999987752 34688999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 025612 171 GVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 171 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
..|.+.|++++|...|++..+.. ..+..+|..+..+|.+.|++++|.+.++...+.
T Consensus 255 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 255 ATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999988752 224788999999999999999999999998764
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.09 E-value=1.5e-08 Score=82.61 Aligned_cols=157 Identities=13% Similarity=0.100 Sum_probs=123.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHH
Q 025612 63 AIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSL---YSDMILML 138 (250)
Q Consensus 63 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~---y~~li~~~ 138 (250)
.+.+-..+...|++++|++.+++ +..++.. .+...+.+.|++++|.+.|+.+.+. .|+... ....+..+
T Consensus 104 ~~~la~~~~~~g~~~~Al~~l~~----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~ 176 (291)
T 3mkr_A 104 LLMAASIYFYDQNPDAALRTLHQ----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSLA 176 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTT----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHH
Confidence 33446788899999999999997 2222333 5788899999999999999999763 355321 23344555
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-H
Q 025612 139 GKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL-V 217 (250)
Q Consensus 139 ~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~-a 217 (250)
...|++++|..+|+++.+. .+.+...|+.+..+|.+.|++++|...|++..+.. .-+..++..+...+...|+.++ +
T Consensus 177 ~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa 254 (291)
T 3mkr_A 177 AGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVT 254 (291)
T ss_dssp HCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred hCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHH
Confidence 6679999999999999886 45688999999999999999999999999987742 2367889999999999999865 6
Q ss_pred HHHHHHHHhcc
Q 025612 218 AAVRRDCIQYV 228 (250)
Q Consensus 218 ~~~~~~m~~~g 228 (250)
.++++.+.+..
T Consensus 255 ~~~~~~~~~~~ 265 (291)
T 3mkr_A 255 NRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 78888877544
No 23
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.08 E-value=5.3e-08 Score=79.34 Aligned_cols=163 Identities=11% Similarity=0.015 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 025612 62 EAIQAVHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139 (250)
Q Consensus 62 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~ 139 (250)
....+...+...|++++|...+++..+..-. +... .+...+...|++++|.+.|+...+ . .+.+...+..+...|.
T Consensus 127 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~-~~~~~~~~~~l~~~~~ 204 (330)
T 3hym_B 127 AWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS-I-APEDPFVMHEVGVVAF 204 (330)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT-T-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-h-CCCChHHHHHHHHHHH
Confidence 3344455566666666666666666543321 1111 355556666666666666666643 1 1334566666666666
Q ss_pred cCCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 025612 140 KNKQIAMAEELFCELKKEG--------LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA 211 (250)
Q Consensus 140 ~~~~~~~A~~~~~~m~~~g--------~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 211 (250)
+.|++++|...|++..+.. ...+..+|..+...|.+.|++++|...|++..+.. ..+...|..+-..|.+.
T Consensus 205 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 283 (330)
T 3hym_B 205 QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLM 283 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHh
Confidence 7777777766666654421 12234566666666667777777777776665532 12445666666666677
Q ss_pred CCHHHHHHHHHHHHhc
Q 025612 212 GEEELVAAVRRDCIQY 227 (250)
Q Consensus 212 g~~~~a~~~~~~m~~~ 227 (250)
|++++|.+.+++..+.
T Consensus 284 g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 284 GNFENAVDYFHTALGL 299 (330)
T ss_dssp TCHHHHHHHHHTTTTT
T ss_pred ccHHHHHHHHHHHHcc
Confidence 7777777766666544
No 24
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.08 E-value=1.4e-08 Score=79.29 Aligned_cols=164 Identities=13% Similarity=0.005 Sum_probs=122.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 025612 62 EAIQAVHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139 (250)
Q Consensus 62 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~ 139 (250)
..+.+...+...|++++|..+|++..+..-. +... .+...+.+.|++++|...|+...+. . +.+...|..+...|.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL-D-SSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-C-CcchHHHHHHHHHHH
Confidence 3444566778889999999999998764322 2222 5777888999999999999998753 2 346888999999999
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 025612 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAA 219 (250)
Q Consensus 140 ~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 219 (250)
..|++++|.+.|++..+.. +.+...|..+...|.+.|++++|...+++..+.. ..+...+..+...+.+.|++++|.+
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999987753 3467889999999999999999999999987753 2367889999999999999999999
Q ss_pred HHHHHHhccC
Q 025612 220 VRRDCIQYVE 229 (250)
Q Consensus 220 ~~~~m~~~g~ 229 (250)
.++...+..-
T Consensus 181 ~~~~~~~~~~ 190 (243)
T 2q7f_A 181 QFAAVTEQDP 190 (243)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHhCc
Confidence 9999887643
No 25
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.07 E-value=4.9e-08 Score=76.66 Aligned_cols=161 Identities=9% Similarity=-0.011 Sum_probs=89.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhc--Cccc------HH-HHHHHHHHcCCHHHHHHHHHHHHHhCC------------
Q 025612 65 QAVHAMKLAKSSSKLEEGFQSRICRL--LKAD------LL-DTLTELRRQNELDLALKVFNFVRKEVW------------ 123 (250)
Q Consensus 65 ~ll~~~~~~~~~~~a~~l~~~m~~~~--~~~~------~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g------------ 123 (250)
.+...+...|++++|...+++..+.. ..++ .. .+-..+.+.|++++|...|+...+...
T Consensus 43 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 122 (258)
T 3uq3_A 43 NRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAE 122 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHH
Confidence 34555556666666666666655322 1111 11 355555666666666666666543110
Q ss_pred -----------CCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 025612 124 -----------YKP-DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA 191 (250)
Q Consensus 124 -----------~~~-~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 191 (250)
..| +...|..+...|...|++++|...|++..+.. +.+..+|..+...|.+.|++++|...|++..+
T Consensus 123 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 123 KELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 111 23445555666666666666666666655431 22455666666666666666666666666655
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 025612 192 SGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 192 ~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
.. ..+...|..+-..+...|++++|.+.++...+.
T Consensus 202 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 202 KD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 32 223556666666666666666666666665543
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.07 E-value=4.1e-08 Score=81.56 Aligned_cols=169 Identities=7% Similarity=-0.056 Sum_probs=126.1
Q ss_pred CCCcHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCC-----------
Q 025612 57 RVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEVW----------- 123 (250)
Q Consensus 57 ~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g----------- 123 (250)
+........+...+...|++++|...|++..+..-. +... .+...+...|++++|...|+.+.+...
T Consensus 95 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 174 (368)
T 1fch_A 95 PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEE 174 (368)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC----
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 333444555677788889999999999888765321 2222 466667777777777777776543110
Q ss_pred -----------------------------------CCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH
Q 025612 124 -----------------------------------YKP---DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV 165 (250)
Q Consensus 124 -----------------------------------~~~---~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t 165 (250)
..| +..+|..+...|.+.|++++|...|++..... +.+..+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~ 253 (368)
T 1fch_A 175 GAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLL 253 (368)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHH
Confidence 012 47888899999999999999999999887642 335788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 025612 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 166 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
|..+...|.+.|++++|...|++..+.. ..+...+..+...|.+.|++++|.+.++...+.
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999987742 235788999999999999999999999888754
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.06 E-value=2.1e-07 Score=77.18 Aligned_cols=164 Identities=13% Similarity=0.074 Sum_probs=130.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 025612 62 EAIQAVHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139 (250)
Q Consensus 62 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~ 139 (250)
..+.+...+...|++++|...|+++.+..-. +... .+...+.+.|++++|...|+...+. . +.+..+|..+...|.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL-K-PDNQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc-C-CCCHHHHHHHHHHHH
Confidence 3455678889999999999999999865321 1222 5788889999999999999998753 2 347889999999999
Q ss_pred cCCCHHHHHHHHHHHHhCCC-----------------------------------------------CC---CHHHHHHH
Q 025612 140 KNKQIAMAEELFCELKKEGL-----------------------------------------------DP---DTRVYTEM 169 (250)
Q Consensus 140 ~~~~~~~A~~~~~~m~~~g~-----------------------------------------------~p---~~~ty~~l 169 (250)
..|++++|.+.|+++....- .| +..+|..+
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l 223 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence 99999999999988765321 12 47788888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 025612 170 IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 170 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g 228 (250)
...|.+.|++++|...|++..+.. ..+..+|..+...|.+.|++++|.+.++...+..
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 281 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 281 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 889999999999999998887642 2356788888999999999999999998887653
No 28
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.06 E-value=1.2e-07 Score=71.04 Aligned_cols=161 Identities=10% Similarity=-0.036 Sum_probs=131.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcC-cccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 025612 63 AIQAVHAMKLAKSSSKLEEGFQSRICRLL-KADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK 140 (250)
Q Consensus 63 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~-~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~ 140 (250)
...+-..+.+.|++++|...|++..+..- .++.. .+-.++.+.|++++|...+....+. . .-+...+..+-..+..
T Consensus 8 y~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~ 85 (184)
T 3vtx_A 8 YMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-D-TTSAEAYYILGSANFM 85 (184)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-chhHHHHHHHHHHHHH
Confidence 44567778889999999999999876431 12222 5778888999999999999998653 2 3357778888889999
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 025612 141 NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220 (250)
Q Consensus 141 ~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~ 220 (250)
.++++.|...+.+.... .+-+...+..+-..|.+.|++++|.+.|++..+.. .-+..+|..+-.+|.+.|++++|.+.
T Consensus 86 ~~~~~~a~~~~~~a~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 163 (184)
T 3vtx_A 86 IDEKQAAIDALQRAIAL-NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKY 163 (184)
T ss_dssp TTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999987764 23367888999999999999999999999988753 23678899999999999999999999
Q ss_pred HHHHHhc
Q 025612 221 RRDCIQY 227 (250)
Q Consensus 221 ~~~m~~~ 227 (250)
|++..+.
T Consensus 164 ~~~al~~ 170 (184)
T 3vtx_A 164 FKKALEK 170 (184)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 9998764
No 29
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.05 E-value=9.9e-08 Score=74.88 Aligned_cols=168 Identities=11% Similarity=0.013 Sum_probs=137.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHH-HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 025612 62 EAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLL-DTLTELRRQNELDLALKVFNFVRKEV-WYKPD----LSLYSDMI 135 (250)
Q Consensus 62 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~-g~~~~----~~~y~~li 135 (250)
....+-..+...|++++|...|++..+....+... .+-.++...|++++|.+.|+...+.. ...++ ..+|..+.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIG 86 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 34455777888999999999999987655667766 68888999999999999999976421 11122 58899999
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCC------------------------CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 025612 136 LMLGKNKQIAMAEELFCELKKEG------------------------LDP-DTRVYTEMIGVYLQVGMIDKAMETYETMK 190 (250)
Q Consensus 136 ~~~~~~~~~~~A~~~~~~m~~~g------------------------~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~ 190 (250)
..|.+.|++++|.+.|++..... ..| +...|..+...|...|++++|...|++..
T Consensus 87 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 166 (258)
T 3uq3_A 87 NAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMI 166 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999999999999987731 233 45678888999999999999999999988
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 025612 191 ASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEF 230 (250)
Q Consensus 191 ~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 230 (250)
+.. ..+..+|..+...|.+.|++++|.+.++...+..-.
T Consensus 167 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 205 (258)
T 3uq3_A 167 KRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205 (258)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence 753 336788999999999999999999999999876533
No 30
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.03 E-value=1.2e-07 Score=77.26 Aligned_cols=163 Identities=11% Similarity=-0.031 Sum_probs=98.7
Q ss_pred HHHHHHHHHhcC-ChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 025612 63 AIQAVHAMKLAK-SSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139 (250)
Q Consensus 63 ~~~ll~~~~~~~-~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~ 139 (250)
...+...+...| ++++|...|++..+..-. +... .+...+...|++++|.+.|+...+. . +.+...+..+...|.
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~-~~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL-M-KGCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-T-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-c-cccHHHHHHHHHHHH
Confidence 333455555566 666666666666543211 1111 4556666667777777777766542 1 123445555666677
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhc
Q 025612 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG--------CTPHKLTFTILIRNLENA 211 (250)
Q Consensus 140 ~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g--------~~p~~~ty~~li~~~~~~ 211 (250)
..|++++|.+.|++..+.. +.+...|..+...|...|++++|...|++..+.. ...+..+|..+...|...
T Consensus 171 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 249 (330)
T 3hym_B 171 LTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249 (330)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh
Confidence 7777777777777665542 3345667777777777777777777777665421 122345677777777777
Q ss_pred CCHHHHHHHHHHHHhcc
Q 025612 212 GEEELVAAVRRDCIQYV 228 (250)
Q Consensus 212 g~~~~a~~~~~~m~~~g 228 (250)
|++++|.+.++...+..
T Consensus 250 g~~~~A~~~~~~a~~~~ 266 (330)
T 3hym_B 250 KKYAEALDYHRQALVLI 266 (330)
T ss_dssp TCHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHhhC
Confidence 77777777777766543
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.03 E-value=3.5e-08 Score=76.69 Aligned_cols=162 Identities=13% Similarity=0.010 Sum_probs=119.3
Q ss_pred CcHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCC
Q 025612 59 LSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQ-----------NELDLALKVFNFVRKEVWYK 125 (250)
Q Consensus 59 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~-----------~~~~~a~~~~~~m~~~~g~~ 125 (250)
.......+-..+.+.|++++|...+++..+..-. +... .+-..+.+. |++++|...|+...+. .
T Consensus 38 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~ 114 (217)
T 2pl2_A 38 DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---N 114 (217)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---C
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---C
Confidence 3344445677788899999999999998764321 1222 466677788 9999999999998753 3
Q ss_pred C-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 025612 126 P-DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTIL 204 (250)
Q Consensus 126 ~-~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l 204 (250)
| +...|..+-..|...|++++|...|++..+.. .+...|..+-..|...|++++|...|++..+.. .-+...+..+
T Consensus 115 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~l 191 (217)
T 2pl2_A 115 PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRY 191 (217)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 4 57889999999999999999999999998876 788999999999999999999999999988742 2266888899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 025612 205 IRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 205 i~~~~~~g~~~~a~~~~~~m~~ 226 (250)
...+.+.|++++|.+.++....
T Consensus 192 a~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 192 ASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHTC----------------
T ss_pred HHHHHHccCHHHHHHHHHHHhh
Confidence 9999999999999999887654
No 32
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.00 E-value=3.8e-08 Score=69.02 Aligned_cols=126 Identities=11% Similarity=0.081 Sum_probs=86.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 177 (250)
+...+...|++++|..+|+.+.+. . +.+...|..+...+...|++++|...|+++...+ +.+...|..+...|...|
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHc-C-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhc
Confidence 445566777777777777776542 2 2356667777777777777788877777776542 335666777777777778
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 025612 178 MIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 178 ~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
++++|.++++++.+.. ..+..++..+...+.+.|++++|.+.++++.+.
T Consensus 84 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 84 DYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8888888877776643 235667777777777888888888877776643
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.99 E-value=6.9e-07 Score=72.53 Aligned_cols=160 Identities=9% Similarity=-0.002 Sum_probs=89.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 025612 66 AVHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ 143 (250)
Q Consensus 66 ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~ 143 (250)
....+...|++++|..+|+++.+..-. +... .+...+.+.|++++|.+.|+...+. . +.+..+|..+...|...|+
T Consensus 27 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~-~~~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 27 EGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML-D-PKDIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-cCCHHHHHHHHHHHHHcCC
Confidence 344455556666666666555443211 1111 3444555555566666555555432 1 2234555555555555555
Q ss_pred HHHHHHHHHHHHhC-------------------------C-----------------------CCCCHHHHHHHHHHHHh
Q 025612 144 IAMAEELFCELKKE-------------------------G-----------------------LDPDTRVYTEMIGVYLQ 175 (250)
Q Consensus 144 ~~~A~~~~~~m~~~-------------------------g-----------------------~~p~~~ty~~li~~~~~ 175 (250)
+++|.+.|++.... | .+.+...+..+...|.+
T Consensus 105 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 184 (327)
T 3cv0_A 105 ANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNL 184 (327)
T ss_dssp HHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 55555555544321 0 01245566667777777
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 025612 176 VGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 176 ~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g 228 (250)
.|++++|.+.+++..+.. ..+..+|..+...+.+.|++++|.+.++...+..
T Consensus 185 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 185 SNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 777777777777766542 2245667777777777777777777777766543
No 34
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.98 E-value=3.8e-08 Score=79.51 Aligned_cols=162 Identities=9% Similarity=0.063 Sum_probs=125.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHh------cCcccHH----HHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCC-CH
Q 025612 65 QAVHAMKLAKSSSKLEEGFQSRICR------LLKADLL----DTLTELRRQNELDLALKVFNFVRKEV-----WYKP-DL 128 (250)
Q Consensus 65 ~ll~~~~~~~~~~~a~~l~~~m~~~------~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~-----g~~~-~~ 128 (250)
.+...+...|++++|...+++.... +..|... .+-..+...|++++|...|++..+.. +-.| ..
T Consensus 74 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 153 (311)
T 3nf1_A 74 ILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVA 153 (311)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 4567777889999999999998754 2233332 47778889999999999999976421 2222 35
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---------
Q 025612 129 SLYSDMILMLGKNKQIAMAEELFCELKKE------GLDP-DTRVYTEMIGVYLQVGMIDKAMETYETMKAS--------- 192 (250)
Q Consensus 129 ~~y~~li~~~~~~~~~~~A~~~~~~m~~~------g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~--------- 192 (250)
..+..+-..|...|++++|.+.|++.... +-.| ...++..+...|...|++++|.+.|++..+.
T Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 233 (311)
T 3nf1_A 154 KQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSV 233 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 67888999999999999999999988653 2233 3457888999999999999999999988752
Q ss_pred ---------------------------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 193 ---------------------------------------GCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 193 ---------------------------------------g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
.-..+..++..+..+|.+.|++++|.+.+++..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 234 DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1122446788899999999999999999988764
No 35
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.98 E-value=3.6e-08 Score=78.33 Aligned_cols=164 Identities=10% Similarity=0.044 Sum_probs=126.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHh------cCcccHH----HHHHHHHHcCCHHHHHHHHHHHHHhC-----C-CCC
Q 025612 63 AIQAVHAMKLAKSSSKLEEGFQSRICR------LLKADLL----DTLTELRRQNELDLALKVFNFVRKEV-----W-YKP 126 (250)
Q Consensus 63 ~~~ll~~~~~~~~~~~a~~l~~~m~~~------~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~-----g-~~~ 126 (250)
...+...+...|++++|...+++..+. +..|... .+-..+...|++++|...|.+..+.. . -..
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 125 (283)
T 3edt_B 46 LNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD 125 (283)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 334577778889999999999998754 2334333 47778889999999999999876421 1 122
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------C
Q 025612 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKE------GLDP-DTRVYTEMIGVYLQVGMIDKAMETYETMKAS------G 193 (250)
Q Consensus 127 ~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~------g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~------g 193 (250)
...+|..+-..|...|++++|...|++.... +-.| ...++..+...|.+.|++++|..+|++..+. +
T Consensus 126 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 205 (283)
T 3edt_B 126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFG 205 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3678889999999999999999999987653 1123 3567889999999999999999999987652 0
Q ss_pred -----------------------------------------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 194 -----------------------------------------CTP-HKLTFTILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 194 -----------------------------------------~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
..| ...++..+...|...|++++|.+++++..+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 206 SVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 112 335788899999999999999999988764
No 36
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.96 E-value=5.8e-08 Score=78.44 Aligned_cols=165 Identities=12% Similarity=0.008 Sum_probs=128.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhc------CcccHH----HHHHHHHHcCCHHHHHHHHHHHHHhC-----C-CCC
Q 025612 63 AIQAVHAMKLAKSSSKLEEGFQSRICRL------LKADLL----DTLTELRRQNELDLALKVFNFVRKEV-----W-YKP 126 (250)
Q Consensus 63 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~------~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~-----g-~~~ 126 (250)
...+...+...|++++|..++++..+.. ..|... .+-..+...|++++|...|+...+.. + ...
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA 109 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 3345777888999999999999987531 122222 47778889999999999999876421 1 122
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------C
Q 025612 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKE------GLDP-DTRVYTEMIGVYLQVGMIDKAMETYETMKAS------G 193 (250)
Q Consensus 127 ~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~------g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~------g 193 (250)
...+|..+...|...|++++|.+.|++..+. +-.| ....|..+...|...|++++|.++|++..+. +
T Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4678899999999999999999999987653 2222 4566888899999999999999999998664 2
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 025612 194 CTP-HKLTFTILIRNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 194 ~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
-.| ...++..+...|...|++++|.+.+++..+.
T Consensus 190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 233 3467888999999999999999999998763
No 37
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.95 E-value=7.4e-07 Score=71.16 Aligned_cols=153 Identities=9% Similarity=-0.083 Sum_probs=88.3
Q ss_pred HHHHHHh----cCChhHHHHHHHHHHHhcCcccHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 025612 66 AVHAMKL----AKSSSKLEEGFQSRICRLLKADLLDTLTELRR----QNELDLALKVFNFVRKEVWYKPDLSLYSDMILM 137 (250)
Q Consensus 66 ll~~~~~----~~~~~~a~~l~~~m~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~ 137 (250)
+-..+.. .+++++|...|++..+.+.......+-..+.. .+++++|...|+...+ .+ +...+..+-..
T Consensus 44 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~ 119 (273)
T 1ouv_A 44 LGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACD-LK---YAEGCASLGGI 119 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHH
T ss_pred HHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHH-cC---CccHHHHHHHH
Confidence 3444445 56666666666666555422222234444555 6666666666666553 22 45556666666
Q ss_pred HHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 025612 138 LGK----NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ----VGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209 (250)
Q Consensus 138 ~~~----~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~ 209 (250)
|.. .+++++|.+.|++..+.+ +...+..+-..|.. .+++++|...|++..+.+ +...+..+-..|.
T Consensus 120 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 193 (273)
T 1ouv_A 120 YHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYH 193 (273)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 666 666666666666665544 45555555555555 666666666666665543 3455556666666
Q ss_pred h----cCCHHHHHHHHHHHHhcc
Q 025612 210 N----AGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 210 ~----~g~~~~a~~~~~~m~~~g 228 (250)
. .+++++|.+.++...+.+
T Consensus 194 ~g~~~~~~~~~A~~~~~~a~~~~ 216 (273)
T 1ouv_A 194 HGEGATKNFKEALARYSKACELE 216 (273)
T ss_dssp HTCSSCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCccHHHHHHHHHHHHhCC
Confidence 6 666666666666666554
No 38
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.94 E-value=3.3e-10 Score=96.77 Aligned_cols=141 Identities=16% Similarity=0.165 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 025612 62 EAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141 (250)
Q Consensus 62 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~ 141 (250)
.+..+..++.+.|++++|.+.|.+. ........++.++...|++++|...++..++ . .+++.+.+.|+.+|.+.
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika---~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark-~--~~~~~i~~~Li~~Y~Kl 107 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARK-K--ARESYVETELIFALAKT 107 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-h--CccchhHHHHHHHHHHh
Confidence 3445699999999999999999753 2222333688999999999999998887764 2 45678999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 025612 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221 (250)
Q Consensus 142 ~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~ 221 (250)
|+++++.++++ .|+..+|+.+...|...|.+++|..+|..+ ..|..+..++.+.|+++.|.+.+
T Consensus 108 g~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~ 171 (449)
T 1b89_A 108 NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGA 171 (449)
T ss_dssp -CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHH
Confidence 99999998885 378889999999999999999999999977 48999999999999999999999
Q ss_pred HHH
Q 025612 222 RDC 224 (250)
Q Consensus 222 ~~m 224 (250)
..+
T Consensus 172 ~KA 174 (449)
T 1b89_A 172 RKA 174 (449)
T ss_dssp HHH
T ss_pred HHc
Confidence 988
No 39
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.93 E-value=1.3e-07 Score=76.97 Aligned_cols=167 Identities=8% Similarity=-0.047 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhC----------------
Q 025612 61 SEAIQAVHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEV---------------- 122 (250)
Q Consensus 61 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~---------------- 122 (250)
.....+...+...|++++|...+++..+..-. +... .+...+...|++++|.+.|+...+..
T Consensus 56 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (327)
T 3cv0_A 56 EAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVD 135 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHH
Confidence 33344466666777777777777777654211 1111 35555556666666665555543210
Q ss_pred --------C-----------------------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 025612 123 --------W-----------------------YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIG 171 (250)
Q Consensus 123 --------g-----------------------~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~ 171 (250)
+ .+.+...+..+...|.+.|++++|.+.|++..+.. +.+..+|..+..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 214 (327)
T 3cv0_A 136 IDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGA 214 (327)
T ss_dssp ----------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 0 12357788899999999999999999999987652 346788999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 025612 172 VYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVE 229 (250)
Q Consensus 172 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~ 229 (250)
.|...|++++|...|++..+.. ..+..++..+...|.+.|++++|.+.++...+..-
T Consensus 215 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 271 (327)
T 3cv0_A 215 TLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQV 271 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 9999999999999999987753 23678899999999999999999999999876543
No 40
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.93 E-value=9.2e-07 Score=72.58 Aligned_cols=158 Identities=15% Similarity=0.105 Sum_probs=87.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhcC-cccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCC----CHHHHHHH----
Q 025612 65 QAVHAMKLAKSSSKLEEGFQSRICRLL-KADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKP----DLSLYSDM---- 134 (250)
Q Consensus 65 ~ll~~~~~~~~~~~a~~l~~~m~~~~~-~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~----~~~~y~~l---- 134 (250)
.+...+...|++++|...+++..+..- .+... .+-..+.+.|++++|...|+...+ ..| +...+..+
T Consensus 42 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~ 118 (359)
T 3ieg_A 42 RRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK---SNPSEQEEKEAESQLVKAD 118 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCcccChHHHHHHHHHHH
Confidence 344555555666666666666554321 11111 355555566666666666666543 123 23333333
Q ss_pred --------HHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 025612 135 --------ILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206 (250)
Q Consensus 135 --------i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~ 206 (250)
...+...|++++|.++|++..+.. +.+...+..+...|...|++++|...+++..+.. ..+..++..+..
T Consensus 119 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 196 (359)
T 3ieg_A 119 EMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKIST 196 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 355556666666666666655431 2345556666666666666666666666665542 234566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 025612 207 NLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 207 ~~~~~g~~~~a~~~~~~m~~~ 227 (250)
.+...|++++|.+.++...+.
T Consensus 197 ~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 197 LYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhh
Confidence 666666666666666666543
No 41
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.90 E-value=2.4e-07 Score=64.82 Aligned_cols=127 Identities=13% Similarity=0.054 Sum_probs=103.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 025612 63 AIQAVHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK 140 (250)
Q Consensus 63 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~ 140 (250)
...+...+...|++++|..+++++.+.... +... .+...+...|++++|...|+.+.+. + +.+...|..+...|..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-C-CCchHHHHHHHHHHHH
Confidence 344577788899999999999998765422 1222 5777888999999999999998753 2 3467889999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 025612 141 NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS 192 (250)
Q Consensus 141 ~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 192 (250)
.|++++|.+.|+++.... +.+..++..+...|.+.|++++|...|+++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 999999999999987752 346788999999999999999999999998764
No 42
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.90 E-value=6.1e-07 Score=73.69 Aligned_cols=162 Identities=10% Similarity=-0.037 Sum_probs=131.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 025612 63 AIQAVHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK 140 (250)
Q Consensus 63 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~ 140 (250)
.+.+...+...|++++|...|++..+..-. +... .+-..+...|++++|...|+...+.. +-+...|..+...|.+
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHHHHHHH
Confidence 445577788999999999999998864322 2222 57788889999999999999987532 2367889999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCC----CHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 025612 141 NKQIAMAEELFCELKKEGLDP----DTRVYTEM------------IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTIL 204 (250)
Q Consensus 141 ~~~~~~A~~~~~~m~~~g~~p----~~~ty~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l 204 (250)
.|++++|...|++..+. .| +...+..+ ...+...|++++|.++|++..+.. ..+...+..+
T Consensus 84 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 160 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELR 160 (359)
T ss_dssp HTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 99999999999998875 45 34444444 578899999999999999988753 3467889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccC
Q 025612 205 IRNLENAGEEELVAAVRRDCIQYVE 229 (250)
Q Consensus 205 i~~~~~~g~~~~a~~~~~~m~~~g~ 229 (250)
...+...|++++|.+.++...+..-
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~ 185 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLKS 185 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999987643
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.88 E-value=1.4e-07 Score=74.88 Aligned_cols=153 Identities=9% Similarity=-0.023 Sum_probs=64.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQI 144 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~ 144 (250)
...+...|++++|...|++..+..-. +... .+-..+...|++++|...|+...+.. +.+...|..+...|.+.|++
T Consensus 50 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~ 127 (275)
T 1xnf_A 50 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRD 127 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--ccccHHHHHHHHHHHHhccH
Confidence 33444445555555555554432211 1111 34444445555555555555544311 11244445555555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 025612 145 AMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDC 224 (250)
Q Consensus 145 ~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m 224 (250)
++|.+.|+++.+. .|+...+...+..+...|++++|...+++..... .++...+ .+...+...++.+.|.+.+...
T Consensus 128 ~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~ 203 (275)
T 1xnf_A 128 KLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKAD 203 (275)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHH
Confidence 5555555554432 2333333333333344455555555554433321 1122222 2344444444445555544444
Q ss_pred H
Q 025612 225 I 225 (250)
Q Consensus 225 ~ 225 (250)
.
T Consensus 204 ~ 204 (275)
T 1xnf_A 204 A 204 (275)
T ss_dssp C
T ss_pred h
Confidence 3
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.88 E-value=2.8e-06 Score=67.77 Aligned_cols=154 Identities=9% Similarity=-0.043 Sum_probs=102.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhcCcccHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 025612 65 QAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRR----QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK 140 (250)
Q Consensus 65 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~ 140 (250)
.+-..+...|++++|...|++..+.+.......+-..+.. .+++++|...|++..+ .+ +...+..+-..|..
T Consensus 11 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~ 86 (273)
T 1ouv_A 11 GLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD-LN---YSNGCHLLGNLYYS 86 (273)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHhC
Confidence 3455566667777777777777664333222245555666 7777777777777654 33 56667777777777
Q ss_pred ----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--
Q 025612 141 ----NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ----VGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN-- 210 (250)
Q Consensus 141 ----~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~-- 210 (250)
.+++++|.+.|++..+.+ +...+..+-..|.. .|++++|...|++..+.+ +...+..+-..|..
T Consensus 87 g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 160 (273)
T 1ouv_A 87 GQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGR 160 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred CCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCC
Confidence 777777777777766654 66667777777777 777777777777776654 45566666666666
Q ss_pred --cCCHHHHHHHHHHHHhcc
Q 025612 211 --AGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 211 --~g~~~~a~~~~~~m~~~g 228 (250)
.+++++|.+.++...+.+
T Consensus 161 ~~~~~~~~A~~~~~~a~~~~ 180 (273)
T 1ouv_A 161 GTPKDLKKALASYDKACDLK 180 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHCC
Confidence 677777777777766654
No 45
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.84 E-value=4.4e-07 Score=82.99 Aligned_cols=155 Identities=13% Similarity=0.122 Sum_probs=130.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 025612 63 AIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLL----DTLTELRRQNELDLALKVFNFVRKEVWYKP-DLSLYSDMILM 137 (250)
Q Consensus 63 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~-~~~~y~~li~~ 137 (250)
...+-..+.+.|++++|...|++..+.. |+.. .+-.+|.+.|++++|.+.|++..+. .| +...|+.+-.+
T Consensus 12 l~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 12 LNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 3345677888999999999999987643 3322 5778888999999999999998753 34 48899999999
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH
Q 025612 138 LGKNKQIAMAEELFCELKKEGLDP-DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP-HKLTFTILIRNLENAGEEE 215 (250)
Q Consensus 138 ~~~~~~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~ 215 (250)
|.+.|++++|.+.|++..+. .| +...|+.+-..|.+.|++++|++.|++..+. .| +...|..+..+|...|+++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999998764 34 5788999999999999999999999998874 45 4688999999999999999
Q ss_pred HHHHHHHHHHh
Q 025612 216 LVAAVRRDCIQ 226 (250)
Q Consensus 216 ~a~~~~~~m~~ 226 (250)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888877654
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.84 E-value=7.6e-07 Score=70.59 Aligned_cols=162 Identities=12% Similarity=0.003 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 025612 61 SEAIQAVHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILML 138 (250)
Q Consensus 61 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~ 138 (250)
.....+...+...|++++|...|++..+..-. +... .+...+.+.|++++|...|+.+.+. .|+...+...+..+
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~ 154 (275)
T 1xnf_A 78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLA 154 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHH
Confidence 33344455666667777777777766653221 2222 4556666677777777777766542 33433444444444
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHHhcCCHH
Q 025612 139 GKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCT--P-HKLTFTILIRNLENAGEEE 215 (250)
Q Consensus 139 ~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p-~~~ty~~li~~~~~~g~~~ 215 (250)
...|++++|...|++.... .+++...|. ++..+...++.++|...++........ | +..+|..+...|.+.|+++
T Consensus 155 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 232 (275)
T 1xnf_A 155 EQKLDEKQAKEVLKQHFEK-SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLD 232 (275)
T ss_dssp HHHHCHHHHHHHHHHHHHH-SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhcCHHHHHHHHHHHHhc-CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHH
Confidence 5556777777777655443 123333333 555555666666666666665443211 0 1356666666777777777
Q ss_pred HHHHHHHHHHhc
Q 025612 216 LVAAVRRDCIQY 227 (250)
Q Consensus 216 ~a~~~~~~m~~~ 227 (250)
+|.+.++...+.
T Consensus 233 ~A~~~~~~al~~ 244 (275)
T 1xnf_A 233 SATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC
Confidence 777777766654
No 47
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.83 E-value=4.4e-07 Score=78.97 Aligned_cols=160 Identities=7% Similarity=-0.035 Sum_probs=133.1
Q ss_pred HHHHHHHHHhcCCh-hHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 025612 63 AIQAVHAMKLAKSS-SKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139 (250)
Q Consensus 63 ~~~ll~~~~~~~~~-~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~ 139 (250)
...+-..+...|++ ++|...|++..+..-. ++.. .+-.+|.+.|++++|.+.|+...+ +.|+...|..+-..|.
T Consensus 105 ~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~lg~~~~ 181 (474)
T 4abn_A 105 LMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT---HCKNKVSLQNLSMVLR 181 (474)
T ss_dssp HHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCHHHHHHHHHHHH
Confidence 33446667788999 9999999998765322 2222 577888899999999999999875 3577889999999999
Q ss_pred cC---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CChHHHHHHHHHHHHCCCCC----CH
Q 025612 140 KN---------KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV--------GMIDKAMETYETMKASGCTP----HK 198 (250)
Q Consensus 140 ~~---------~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~p----~~ 198 (250)
.. |++++|.+.|++..+.. +-+...|..+-..|... |++++|.+.|++..+. .| +.
T Consensus 182 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 258 (474)
T 4abn_A 182 QLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNP 258 (474)
T ss_dssp TCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCH
T ss_pred HhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCH
Confidence 99 99999999999987742 33578899999999998 9999999999998874 35 78
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 025612 199 LTFTILIRNLENAGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 199 ~ty~~li~~~~~~g~~~~a~~~~~~m~~~g 228 (250)
..|..+-.+|...|++++|.+.|++..+..
T Consensus 259 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 259 DLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 899999999999999999999999987653
No 48
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.83 E-value=5.1e-07 Score=78.14 Aligned_cols=168 Identities=8% Similarity=-0.064 Sum_probs=125.6
Q ss_pred cHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 025612 60 SSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILM 137 (250)
Q Consensus 60 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~ 137 (250)
......+...+...|++++|...+++..+..-. +... .+...+.+.|++++|...|+.+.+.. +.+...|..+...
T Consensus 304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~ 381 (514)
T 2gw1_A 304 SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEI 381 (514)
T ss_dssp THHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHH
Confidence 344445577778888899999988888754322 2222 57777788899999999999886532 2356778888888
Q ss_pred HHcCCCHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 025612 138 LGKNKQIAMAEELFCELKKEG-LDPD----TRVYTEMIGVYLQ---VGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209 (250)
Q Consensus 138 ~~~~~~~~~A~~~~~~m~~~g-~~p~----~~ty~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~ 209 (250)
|.+.|++++|...|+++.... -.++ ..+|..+...|.. .|++++|...|+...+.. ..+..++..+...|.
T Consensus 382 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 460 (514)
T 2gw1_A 382 LTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKL 460 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 999999999999988876531 1122 4478888888888 899999999998887643 235678888889999
Q ss_pred hcCCHHHHHHHHHHHHhccCC
Q 025612 210 NAGEEELVAAVRRDCIQYVEF 230 (250)
Q Consensus 210 ~~g~~~~a~~~~~~m~~~g~~ 230 (250)
+.|++++|.+.++...+..-.
T Consensus 461 ~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 461 QQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HTTCHHHHHHHHHHHHHHCSS
T ss_pred HhcCHHHHHHHHHHHHHhccc
Confidence 999999999999888876544
No 49
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.81 E-value=9.6e-07 Score=76.40 Aligned_cols=91 Identities=7% Similarity=-0.163 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHH---HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 025612 63 AIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLL---DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139 (250)
Q Consensus 63 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~---~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~ 139 (250)
....-..+.+.|++++|...|+++.+.. |+.. .+..++.+.|++++|...|+.+.+. . +.+...|..+..+|.
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALEL-K-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc-C-hHHHHHHHHHHHHHH
Confidence 3444666777788888888888887655 3433 4677777888888888888887642 2 335677888888888
Q ss_pred cCCCHHHHHHHHHHHHhC
Q 025612 140 KNKQIAMAEELFCELKKE 157 (250)
Q Consensus 140 ~~~~~~~A~~~~~~m~~~ 157 (250)
+.|++++|...|+++...
T Consensus 85 ~~g~~~~A~~~~~~~~~~ 102 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLN 102 (514)
T ss_dssp HTTCHHHHHHHHHHHHHS
T ss_pred HHhhHHHHHHHHHHHHhc
Confidence 888888888888877654
No 50
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.79 E-value=2e-06 Score=70.25 Aligned_cols=163 Identities=12% Similarity=0.062 Sum_probs=126.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhcCc-cc-HH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 025612 62 EAIQAVHAMKLAKSSSKLEEGFQSRICRLLK-AD-LL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILML 138 (250)
Q Consensus 62 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~-~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~ 138 (250)
.+......+.+.|++++|..+|++..+..-. ++ .. .+...+.+.|++++|..+|+...+ .. +.+...|.......
T Consensus 101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~-p~~~~~~~~~a~~~ 178 (308)
T 2ond_A 101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE-DA-RTRHHVYVTAALME 178 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT-ST-TCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cC-CCCHHHHHHHHHHH
Confidence 4445577788899999999999999874321 22 22 577778889999999999999875 22 23455555444332
Q ss_pred -HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCH
Q 025612 139 -GKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG-CTP--HKLTFTILIRNLENAGEE 214 (250)
Q Consensus 139 -~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p--~~~ty~~li~~~~~~g~~ 214 (250)
...|++++|..+|+...+. .+-+...|..++..+.+.|+.++|..+|++..... +.| ....|..++....+.|+.
T Consensus 179 ~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~ 257 (308)
T 2ond_A 179 YYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred HHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 2379999999999988764 12367889999999999999999999999998863 555 467889999999999999
Q ss_pred HHHHHHHHHHHhc
Q 025612 215 ELVAAVRRDCIQY 227 (250)
Q Consensus 215 ~~a~~~~~~m~~~ 227 (250)
+.|..+++.+.+.
T Consensus 258 ~~a~~~~~~a~~~ 270 (308)
T 2ond_A 258 ASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.79 E-value=3e-06 Score=67.13 Aligned_cols=162 Identities=11% Similarity=-0.009 Sum_probs=121.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcC-ccc-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHH
Q 025612 64 IQAVHAMKLAKSSSKLEEGFQSRICRLL-KAD-LLDTLTELRRQNELDLALKVFNFVRKEVWYKPD--LSLYSDMILMLG 139 (250)
Q Consensus 64 ~~ll~~~~~~~~~~~a~~l~~~m~~~~~-~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~--~~~y~~li~~~~ 139 (250)
+.....+...|++++|...|++..+..- .+. ...+...+...|++++|.+.|+...+ ..-.++ ...|..+-..|.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHH
Confidence 3446677888999999999999876432 222 22577788899999999999999875 332222 445888889999
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 025612 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAA 219 (250)
Q Consensus 140 ~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 219 (250)
..|++++|.+.|++..+.. +-+..+|..+...|...|++++|...|++..+.. .-+...|..+-..+...+++++|.+
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887642 2355788899999999999999999998887752 2345666666624445569999999
Q ss_pred HHHHHHhcc
Q 025612 220 VRRDCIQYV 228 (250)
Q Consensus 220 ~~~~m~~~g 228 (250)
.++...+..
T Consensus 164 ~~~~a~~~~ 172 (272)
T 3u4t_A 164 SFVKVLELK 172 (272)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhC
Confidence 999887654
No 52
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.78 E-value=9.5e-07 Score=65.36 Aligned_cols=129 Identities=14% Similarity=0.038 Sum_probs=109.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 176 (250)
.+...+...|++++|...|+.+.+ . .+.+...|..+...|...|++++|.+.|++..+. .+.+...|..+...|...
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYD-A-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD-APDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCC-T-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH-h-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHh
Confidence 356677889999999999998853 2 2346888999999999999999999999998765 234678899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 025612 177 GMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVE 229 (250)
Q Consensus 177 g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~ 229 (250)
|++++|.+.|++..+.. ..+...+..+...+...|++++|.+.++...+..-
T Consensus 90 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 141 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141 (186)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc
Confidence 99999999999987753 34678899999999999999999999999887643
No 53
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.77 E-value=5.3e-07 Score=78.63 Aligned_cols=158 Identities=11% Similarity=-0.033 Sum_probs=130.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCcccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH
Q 025612 66 AVHAMKLAKSSSKLEEGFQSRICRLLKADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQI 144 (250)
Q Consensus 66 ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~ 144 (250)
+-..+...|++++|...+++..+..-.+... .+-..+...|++++|...|+...+.. +.+..+|..+...|...|++
T Consensus 249 ~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 249 TGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCCH
Confidence 4566778899999999999998754332222 56777789999999999999987532 34688899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 025612 145 AMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDC 224 (250)
Q Consensus 145 ~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m 224 (250)
++|...|++..... +-+...|..+...|...|++++|..+|++..+.. ..+...+..+...+...|++++|.+.++..
T Consensus 327 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 327 KNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999987752 2246789999999999999999999999988753 335678999999999999999999999998
Q ss_pred Hhc
Q 025612 225 IQY 227 (250)
Q Consensus 225 ~~~ 227 (250)
.+.
T Consensus 405 ~~~ 407 (537)
T 3fp2_A 405 KRL 407 (537)
T ss_dssp HHH
T ss_pred HHc
Confidence 754
No 54
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.77 E-value=1.9e-07 Score=74.08 Aligned_cols=157 Identities=11% Similarity=0.006 Sum_probs=118.5
Q ss_pred HhcCChhHHHHHHHHHHHhc------CcccHH----HHHHHHHHcCCHHHHHHHHHHHHHhC-----CC-CCCHHHHHHH
Q 025612 71 KLAKSSSKLEEGFQSRICRL------LKADLL----DTLTELRRQNELDLALKVFNFVRKEV-----WY-KPDLSLYSDM 134 (250)
Q Consensus 71 ~~~~~~~~a~~l~~~m~~~~------~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~-----g~-~~~~~~y~~l 134 (250)
...|++++|..++++..+.- -.|... .+-..+...|++++|...|++..+.. +- .....+|+.+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34577777777777765421 123222 47778889999999999999976431 21 2236788999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHH
Q 025612 135 ILMLGKNKQIAMAEELFCELKKE------GL-DPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS------GCTP-HKLT 200 (250)
Q Consensus 135 i~~~~~~~~~~~A~~~~~~m~~~------g~-~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~t 200 (250)
-..|...|++++|.+.|++.... .- +....+|..+...|...|++++|...|++..+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999987653 11 224677889999999999999999999988764 2233 3467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 025612 201 FTILIRNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 201 y~~li~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
+..+-..|...|++++|.+++++..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 889999999999999999999988754
No 55
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.76 E-value=4.5e-06 Score=64.67 Aligned_cols=160 Identities=15% Similarity=0.040 Sum_probs=126.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHH---HHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 025612 62 EAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLL---DTLTELRRQNELDLALKVFNFVRKEVWYKP-DLSLYSDMILM 137 (250)
Q Consensus 62 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~---~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~-~~~~y~~li~~ 137 (250)
.....-..+...|++++|...|++..+..-.++.. .+-.++.+.|++++|.+.|+...+ . .| +...|..+-..
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~--~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK-K--NYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-T--TCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH-h--CcchHHHHHHHHHH
Confidence 34455677888999999999999998765323333 466778899999999999999875 2 34 46788999999
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCC-H-------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 025612 138 LGKNKQIAMAEELFCELKKEGLDPD-T-------RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH---KLTFTILIR 206 (250)
Q Consensus 138 ~~~~~~~~~A~~~~~~m~~~g~~p~-~-------~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~ty~~li~ 206 (250)
|...|++++|...|++..+. .|+ . ..|..+-..+...|++++|.+.|++..+. .|+ ...|..+-.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 99999999999999998764 333 3 45777888889999999999999999874 575 467777888
Q ss_pred HHHhcCCH---------------------------HHHHHHHHHHHhcc
Q 025612 207 NLENAGEE---------------------------ELVAAVRRDCIQYV 228 (250)
Q Consensus 207 ~~~~~g~~---------------------------~~a~~~~~~m~~~g 228 (250)
.|...|+. ++|.+.++...+..
T Consensus 162 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 88877777 77888887777654
No 56
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.75 E-value=1.7e-06 Score=70.70 Aligned_cols=158 Identities=13% Similarity=0.016 Sum_probs=97.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcC---cccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-----CHHHHHHH
Q 025612 64 IQAVHAMKLAKSSSKLEEGFQSRICRLL---KADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKP-----DLSLYSDM 134 (250)
Q Consensus 64 ~~ll~~~~~~~~~~~a~~l~~~m~~~~~---~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~-----~~~~y~~l 134 (250)
..+...+...|++++|++++.+.+..+- ..... .++..+.+.|+.+.|.+.++.|.+. .| +..+...|
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~~d~~l~~L 180 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA---IEDTVSGDNEMILNL 180 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CccccccchHHHHHH
Confidence 4446666777888888888877655442 22222 4777777888888888888877642 44 24555555
Q ss_pred HHHHH--c--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CC---CC-CHHHH
Q 025612 135 ILMLG--K--NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS-----GC---TP-HKLTF 201 (250)
Q Consensus 135 i~~~~--~--~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~-----g~---~p-~~~ty 201 (250)
..++. . .++..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+. +. .| |..++
T Consensus 181 aea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~L 258 (310)
T 3mv2_B 181 AESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFL 258 (310)
T ss_dssp HHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHH
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHH
Confidence 55522 2 33777888888887654 355444445555777778888888887765442 11 13 44555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 025612 202 TILIRNLENAGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 202 ~~li~~~~~~g~~~~a~~~~~~m~~~g 228 (250)
..+|......|+ .|.+++.++++..
T Consensus 259 aN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 259 ANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 455555555666 6777777777654
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.65 E-value=1.2e-05 Score=65.55 Aligned_cols=155 Identities=10% Similarity=0.043 Sum_probs=119.8
Q ss_pred hcCCh-------hHHHHHHHHHHHhcCcccHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHH
Q 025612 72 LAKSS-------SKLEEGFQSRICRLLKADLL----DTLTELRRQNELDLALKVFNFVRKEVWYKPD-LS-LYSDMILML 138 (250)
Q Consensus 72 ~~~~~-------~~a~~l~~~m~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~~-~y~~li~~~ 138 (250)
+.|+. ++|..+|++..+. +.|+.. .+...+.+.|++++|..+|+...+ +.|+ .. .|..+...+
T Consensus 69 ~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~ 144 (308)
T 2ond_A 69 EKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFA 144 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SSSSCTHHHHHHHHHHH
T ss_pred hccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---ccccCccHHHHHHHHHH
Confidence 35886 8999999998763 233322 577888899999999999999975 3453 33 899999999
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 025612 139 GKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYL-QVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217 (250)
Q Consensus 139 ~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~-~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a 217 (250)
.+.|++++|..+|++..+.+ +++...|........ ..|+.++|..+|+...+.. .-+...|..++..+.+.|++++|
T Consensus 145 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A 222 (308)
T 2ond_A 145 RRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNT 222 (308)
T ss_dssp HHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999988753 234445544433322 3699999999999987642 22678899999999999999999
Q ss_pred HHHHHHHHhcc-CCch
Q 025612 218 AAVRRDCIQYV-EFPE 232 (250)
Q Consensus 218 ~~~~~~m~~~g-~~pd 232 (250)
..+|+...+.. +.|+
T Consensus 223 ~~~~~~al~~~~l~p~ 238 (308)
T 2ond_A 223 RVLFERVLTSGSLPPE 238 (308)
T ss_dssp HHHHHHHHHSSSSCGG
T ss_pred HHHHHHHHhccCCCHH
Confidence 99999999864 4554
No 58
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.64 E-value=7.7e-06 Score=71.21 Aligned_cols=162 Identities=8% Similarity=-0.043 Sum_probs=86.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 025612 66 AVHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ 143 (250)
Q Consensus 66 ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~ 143 (250)
+...+...|++++|...+++..+..-. +... .+...+...|++++|...|+...+.. +.+...|..+...|...|+
T Consensus 316 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 393 (537)
T 3fp2_A 316 RGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGD 393 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCC
Confidence 344445555555555555555433211 1111 34455555566666666665554321 2234455555555566666
Q ss_pred HHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 025612 144 IAMAEELFCELKKEG-----LDPDTRVYTEMIGVYLQV----------GMIDKAMETYETMKASGCTPHKLTFTILIRNL 208 (250)
Q Consensus 144 ~~~A~~~~~~m~~~g-----~~p~~~ty~~li~~~~~~----------g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~ 208 (250)
+++|.+.|++..+.. .......+......|.+. |++++|...|++..+.. ..+...+..+...|
T Consensus 394 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 472 (537)
T 3fp2_A 394 FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLK 472 (537)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 666666655543321 111112223333444444 66666666666655532 23567788888888
Q ss_pred HhcCCHHHHHHHHHHHHhccCC
Q 025612 209 ENAGEEELVAAVRRDCIQYVEF 230 (250)
Q Consensus 209 ~~~g~~~~a~~~~~~m~~~g~~ 230 (250)
.+.|++++|.+.|+...+..-.
T Consensus 473 ~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 473 LQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--
T ss_pred HHhccHHHHHHHHHHHHHhCCC
Confidence 8888888888888887765444
No 59
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.61 E-value=3.6e-06 Score=68.80 Aligned_cols=154 Identities=12% Similarity=0.007 Sum_probs=114.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHH---HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHH
Q 025612 63 AIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLL---DTLTELRRQNELDLALKVFNFVRKEVWY-KPDLSLYSDMILML 138 (250)
Q Consensus 63 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~---~ll~~~~~~~~~~~a~~~~~~m~~~~g~-~~~~~~y~~li~~~ 138 (250)
++.++..|...+ |...|++....+ .++.. .+-.++...|++++|++++.+... .+- .-+...+-.++..|
T Consensus 73 a~~~la~~~~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~-~~~~~~~lea~~l~vqi~ 146 (310)
T 3mv2_B 73 VLDLYVQFLDTK----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGID-NDEAEGTTELLLLAIEVA 146 (310)
T ss_dssp HHHHHHHHHTTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-SSCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cCCCcCcHHHHHHHHHHH
Confidence 344444444422 677777776554 22222 566778889999999999998753 332 23678888999999
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHh--cC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 025612 139 GKNKQIAMAEELFCELKKEGLDP-----DTRVYTEMIGVYLQ--VG--MIDKAMETYETMKASGCTPHKLTFTILIRNLE 209 (250)
Q Consensus 139 ~~~~~~~~A~~~~~~m~~~g~~p-----~~~ty~~li~~~~~--~g--~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~ 209 (250)
.+.|+++.|.+.+++|.+. .| +..+...|..+++. .| +..+|..+|+++.+. .|+..+-..++.++.
T Consensus 147 L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~ 222 (310)
T 3mv2_B 147 LLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHL 222 (310)
T ss_dssp HHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHH
Confidence 9999999999999999874 56 35666666666333 34 899999999999775 366555566667999
Q ss_pred hcCCHHHHHHHHHHHHh
Q 025612 210 NAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 210 ~~g~~~~a~~~~~~m~~ 226 (250)
+.|++++|++.++.+.+
T Consensus 223 ~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 223 QQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHTCHHHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999997665
No 60
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.61 E-value=2.9e-06 Score=67.20 Aligned_cols=161 Identities=10% Similarity=0.063 Sum_probs=126.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhcCcccH-----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 025612 62 EAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADL-----LDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMIL 136 (250)
Q Consensus 62 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~-----~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~ 136 (250)
....+...+...|++++|...+++..+..-.++. ..+-..+...|++++|.+.|+...+.. +.+...|..+-.
T Consensus 39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~ 116 (272)
T 3u4t_A 39 IYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGS 116 (272)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--cccHHHHHHHHH
Confidence 3445577888999999999999999874433333 257788889999999999999987532 235678999999
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC--
Q 025612 137 MLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP-HKLTFTILIRNLENAGE-- 213 (250)
Q Consensus 137 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~-- 213 (250)
.|...|++++|...|++..+. -+-+...|..+...+...+++++|.+.|++..+. .| +...+..+-..+...|+
T Consensus 117 ~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~ 193 (272)
T 3u4t_A 117 YFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDT 193 (272)
T ss_dssp HHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcch
Confidence 999999999999999998765 2335666777763455567999999999998874 34 46778888888888888
Q ss_pred -HHHHHHHHHHHHhc
Q 025612 214 -EELVAAVRRDCIQY 227 (250)
Q Consensus 214 -~~~a~~~~~~m~~~ 227 (250)
+++|...+++..+.
T Consensus 194 ~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 194 KQGLAKPYYEKLIEV 208 (272)
T ss_dssp SSCTTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 77788888887654
No 61
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.61 E-value=6.2e-06 Score=65.35 Aligned_cols=163 Identities=15% Similarity=0.059 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhcCc----ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 025612 61 SEAIQAVHAMKLAKSSSKLEEGFQSRICRLLK----ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPD-LSLYSDM 134 (250)
Q Consensus 61 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~----~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~~~y~~l 134 (250)
...+.....+.+.|++++|...|++..+..-. +... .+-.++.+.|++++|...|+...+...-.|. ...+..+
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 34555677788999999999999999865322 2222 4777888999999999999999764222223 4567777
Q ss_pred HHHHHc--------CCCHHHHHHHHHHHHhCCCCCC-HHHH-----------------HHHHHHHHhcCChHHHHHHHHH
Q 025612 135 ILMLGK--------NKQIAMAEELFCELKKEGLDPD-TRVY-----------------TEMIGVYLQVGMIDKAMETYET 188 (250)
Q Consensus 135 i~~~~~--------~~~~~~A~~~~~~m~~~g~~p~-~~ty-----------------~~li~~~~~~g~~~~a~~~~~~ 188 (250)
-.+|.+ .|++++|...|++..+. .|+ ...+ -.+-..|.+.|++++|...|+.
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 788888 99999999999998774 233 2223 4457788999999999999999
Q ss_pred HHHCCCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhc
Q 025612 189 MKASGCTPH----KLTFTILIRNLENA----------GEEELVAAVRRDCIQY 227 (250)
Q Consensus 189 m~~~g~~p~----~~ty~~li~~~~~~----------g~~~~a~~~~~~m~~~ 227 (250)
..+.. |+ ...+..+..+|.+. |++++|.+.++...+.
T Consensus 174 ~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 174 VFDAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHC--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 87742 43 45777888888866 8999999999998864
No 62
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.60 E-value=6.8e-06 Score=63.85 Aligned_cols=162 Identities=11% Similarity=0.037 Sum_probs=118.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCc-c---cHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCH-HHHHHHHH
Q 025612 63 AIQAVHAMKLAKSSSKLEEGFQSRICRLLK-A---DLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDL-SLYSDMIL 136 (250)
Q Consensus 63 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~---~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~-~~y~~li~ 136 (250)
.+.....+.+.|++++|...|+++.+..-. | +.. .+..++.+.|++++|...|+...+...-.+.. ..+-.+-.
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~ 86 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGL 86 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHH
Confidence 344566788899999999999999864322 2 122 57788999999999999999987643222322 13333333
Q ss_pred HHH------------------cCCCHHHHHHHHHHHHhCCCCCCHH-HH-----------------HHHHHHHHhcCChH
Q 025612 137 MLG------------------KNKQIAMAEELFCELKKEGLDPDTR-VY-----------------TEMIGVYLQVGMID 180 (250)
Q Consensus 137 ~~~------------------~~~~~~~A~~~~~~m~~~g~~p~~~-ty-----------------~~li~~~~~~g~~~ 180 (250)
+|. ..|++++|...|++..+. .|+.. .+ -.+...|.+.|+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~ 164 (225)
T 2yhc_A 87 TNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWV 164 (225)
T ss_dssp HHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 333 367899999999998875 34421 22 23455788899999
Q ss_pred HHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 025612 181 KAMETYETMKASGCTPHK----LTFTILIRNLENAGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 181 ~a~~~~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~a~~~~~~m~~~g 228 (250)
+|...|+++.+. -|+. ..+..+..+|.+.|+.++|.+.++.+...+
T Consensus 165 ~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 165 AVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 999999998874 2442 568889999999999999999999887654
No 63
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.60 E-value=4.8e-06 Score=67.47 Aligned_cols=161 Identities=9% Similarity=-0.057 Sum_probs=120.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHh----cCcccHH----HHHHHHHHcCCHHHHHHHHHHHHHh---CCCCC-CHHHHHH
Q 025612 66 AVHAMKLAKSSSKLEEGFQSRICR----LLKADLL----DTLTELRRQNELDLALKVFNFVRKE---VWYKP-DLSLYSD 133 (250)
Q Consensus 66 ll~~~~~~~~~~~a~~l~~~m~~~----~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~---~g~~~-~~~~y~~ 133 (250)
....+...|++++|...|.+.... |..+... .+-.+|.+.|++++|...|+...+- .|-.. -..+|+.
T Consensus 43 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 122 (292)
T 1qqe_A 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (292)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455677889999999999988643 3222222 4777788999999999999986531 11110 1467889
Q ss_pred HHHHHHcC-CCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------HHH
Q 025612 134 MILMLGKN-KQIAMAEELFCELKKE----GLDPD-TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK------LTF 201 (250)
Q Consensus 134 li~~~~~~-~~~~~A~~~~~~m~~~----g~~p~-~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~ty 201 (250)
+-..|... |++++|...|++..+. +-.+. ..+|+.+...|.+.|++++|...|++..+..-.... ..|
T Consensus 123 lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 99999996 9999999999987552 11111 457889999999999999999999998875322211 257
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 202 TILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 202 ~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
..+..++...|+++.|.+.+++..+
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7788889999999999999998765
No 64
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.54 E-value=1.2e-05 Score=67.91 Aligned_cols=159 Identities=8% Similarity=0.039 Sum_probs=125.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHH----HHHHHHHHcCC-HHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 025612 63 AIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLL----DTLTELRRQNE-LDLALKVFNFVRKEVWYKPDLSLYSDMILM 137 (250)
Q Consensus 63 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~----~ll~~~~~~~~-~~~a~~~~~~m~~~~g~~~~~~~y~~li~~ 137 (250)
...+-..+.+.|++++|+..+++.+... |+.. .+-.++.+.|+ +++|...|++..+. . +-+...|+.+-.+
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l-~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-Q-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-C-CCCHHHHHHHHHH
Confidence 3344566777899999999999988543 3322 46667778897 99999999998753 2 2368899999999
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHH
Q 025612 138 LGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN-AGEEEL 216 (250)
Q Consensus 138 ~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~-~g~~~~ 216 (250)
|.+.|++++|+..|++..+.. +-+...|..+-..+.+.|++++|+..|+++.+..- -+...|+.+-.++.+ .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchH
Confidence 999999999999999988742 23678899999999999999999999999988542 267889999999999 666566
Q ss_pred H-----HHHHHHHHhc
Q 025612 217 V-----AAVRRDCIQY 227 (250)
Q Consensus 217 a-----~~~~~~m~~~ 227 (250)
| .+.++...+.
T Consensus 254 A~~~~el~~~~~Al~l 269 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKL 269 (382)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6 4667666553
No 65
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.54 E-value=5.2e-06 Score=67.30 Aligned_cols=162 Identities=10% Similarity=0.035 Sum_probs=113.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhc----CcccHH----HHHHHHHHc-CCHHHHHHHHHHHHHh---CCCCCC-HH
Q 025612 63 AIQAVHAMKLAKSSSKLEEGFQSRICRL----LKADLL----DTLTELRRQ-NELDLALKVFNFVRKE---VWYKPD-LS 129 (250)
Q Consensus 63 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~----~~~~~~----~ll~~~~~~-~~~~~a~~~~~~m~~~---~g~~~~-~~ 129 (250)
...+-..+.+.|++++|...+++..... -..... .+-..|... |++++|...|++..+- .+-.+. ..
T Consensus 80 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~ 159 (292)
T 1qqe_A 80 YVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNK 159 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHH
Confidence 3345677788899999999999886432 111111 466677786 9999999999987541 111001 45
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----
Q 025612 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT------RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK----- 198 (250)
Q Consensus 130 ~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~------~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----- 198 (250)
+|+.+-..|.+.|++++|...|++..+....... .+|..+..+|...|++++|...|++..+. .|+.
T Consensus 160 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~ 237 (292)
T 1qqe_A 160 CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRE 237 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHH
Confidence 7889999999999999999999998875332222 25777888899999999999999998762 3432
Q ss_pred -HHHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 025612 199 -LTFTILIRNLE--NAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 199 -~ty~~li~~~~--~~g~~~~a~~~~~~m~~ 226 (250)
..+..++.+|. ..+++++|.+.|+.+.+
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 23455666665 45678888887766544
No 66
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.54 E-value=1.9e-05 Score=60.15 Aligned_cols=84 Identities=18% Similarity=0.150 Sum_probs=38.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 025612 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDK 181 (250)
Q Consensus 102 ~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 181 (250)
+...|++++|...|++. +.|+...|..+-..|.+.|++++|.+.|++..... +.+...|..+-..|...|++++
T Consensus 16 ~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~ 89 (213)
T 1hh8_A 16 AADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 89 (213)
T ss_dssp HHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHH
Confidence 33444455544444433 12344444444444555555555555544443321 1233444444444455555555
Q ss_pred HHHHHHHHHH
Q 025612 182 AMETYETMKA 191 (250)
Q Consensus 182 a~~~~~~m~~ 191 (250)
|...|++..+
T Consensus 90 A~~~~~~al~ 99 (213)
T 1hh8_A 90 AIKDLKEALI 99 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 67
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.53 E-value=6.9e-06 Score=72.81 Aligned_cols=152 Identities=6% Similarity=-0.082 Sum_probs=96.4
Q ss_pred cCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 025612 73 AKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEEL 150 (250)
Q Consensus 73 ~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~ 150 (250)
.|++++|...+++..+..-. +... .+-..+.+.|++++|.+.|++..+ .. +.+...|..+-..|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA-LH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-TS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 36677777777776543211 1111 466677788888888888888764 21 23577788888888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhc
Q 025612 151 FCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENA---GEEELVAAVRRDCIQY 227 (250)
Q Consensus 151 ~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~---g~~~~a~~~~~~m~~~ 227 (250)
|++..+.. +-+...|..+-..|.+.|++++|.+.|++..+.. .-+...+..+...+... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 88876642 2346778888888888888888888888876642 22467777888888888 8888888888887655
Q ss_pred c
Q 025612 228 V 228 (250)
Q Consensus 228 g 228 (250)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.52 E-value=4.3e-05 Score=56.85 Aligned_cols=128 Identities=13% Similarity=0.044 Sum_probs=107.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 176 (250)
.+=..+.+.|++++|.+.|++..+.. +-+...|..+-..|.+.|++++|...+....... +-+...+..+...+...
T Consensus 10 ~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 86 (184)
T 3vtx_A 10 DIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANFMI 86 (184)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHc
Confidence 46677889999999999999987632 2368889999999999999999999999887642 33567788888889999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 025612 177 GMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 177 g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g 228 (250)
++++.+...+.+..... .-+...+..+-..|.+.|++++|.+.|++..+..
T Consensus 87 ~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~ 137 (184)
T 3vtx_A 87 DEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK 137 (184)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc
Confidence 99999999999987743 2367888999999999999999999999988754
No 69
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.51 E-value=1.4e-05 Score=54.88 Aligned_cols=98 Identities=11% Similarity=0.109 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 025612 128 LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN 207 (250)
Q Consensus 128 ~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~ 207 (250)
...|..+...|...|++++|.++|+++.... +.+..+|..+...|.+.|++++|..+|+++.+.. ..+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455555555566666666666665554431 2244555555556666666666666666555432 2244555555666
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 025612 208 LENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 208 ~~~~g~~~~a~~~~~~m~~~ 227 (250)
|...|++++|.+.++.+.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 66666666666666655543
No 70
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.49 E-value=3.8e-05 Score=62.06 Aligned_cols=161 Identities=7% Similarity=0.013 Sum_probs=120.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhc-CcccHH-------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC----HHHHHH
Q 025612 66 AVHAMKLAKSSSKLEEGFQSRICRL-LKADLL-------DTLTELRRQNELDLALKVFNFVRKEVWYKPD----LSLYSD 133 (250)
Q Consensus 66 ll~~~~~~~~~~~a~~l~~~m~~~~-~~~~~~-------~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~----~~~y~~ 133 (250)
.+..+...|++++|..++++..+.. ..|+.. .+...+...+++++|...|+...+...-.++ ..+|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4677888999999999999987633 233322 2444555678999999999998752222233 447999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCC-HHHHH
Q 025612 134 MILMLGKNKQIAMAEELFCELKK----E-GLDPD-TRVYTEMIGVYLQVGMIDKAMETYETMKA----SGCTPH-KLTFT 202 (250)
Q Consensus 134 li~~~~~~~~~~~A~~~~~~m~~----~-g~~p~-~~ty~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~ty~ 202 (250)
+-..|...|++++|...|++..+ . +..+. ..+|..+...|.+.|++++|...+++..+ .+..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999998763 1 22222 34788899999999999999999987653 343343 57888
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHh
Q 025612 203 ILIRNLENAG-EEELVAAVRRDCIQ 226 (250)
Q Consensus 203 ~li~~~~~~g-~~~~a~~~~~~m~~ 226 (250)
.+-.+|.+.| ++++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999999 57999988887653
No 71
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.48 E-value=2e-05 Score=72.10 Aligned_cols=124 Identities=15% Similarity=0.155 Sum_probs=108.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKP-DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP-DTRVYTEMIGVYLQ 175 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~-~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~ 175 (250)
+=..+.+.|++++|.+.|++..+. .| +...|+.|-.+|.+.|++++|...|++..+. .| +...|+.+-..|.+
T Consensus 15 LG~~~~~~G~~~eAi~~~~kAl~l---~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~l~~ 89 (723)
T 4gyw_A 15 LANIKREQGNIEEAVRLYRKALEV---FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKE 89 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 566788999999999999998753 34 4889999999999999999999999998764 44 47889999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 025612 176 VGMIDKAMETYETMKASGCTP-HKLTFTILIRNLENAGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 176 ~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g 228 (250)
.|++++|.+.|++..+. .| +...|+.+-.+|.+.|++++|.+.|++..+..
T Consensus 90 ~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 141 (723)
T 4gyw_A 90 MQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK 141 (723)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999998774 35 56889999999999999999999999987654
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.47 E-value=1.9e-05 Score=66.19 Aligned_cols=161 Identities=7% Similarity=-0.078 Sum_probs=120.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHh----cCcccHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-----CHHHHHH
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICR----LLKADLL----DTLTELRRQNELDLALKVFNFVRKEVWYKP-----DLSLYSD 133 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~----~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~-----~~~~y~~ 133 (250)
-..+...|++++|...+++..+. +-.+... .+-..+...|++++|...+.+..+...-.+ ...+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 34456779999999999998754 1122111 467778899999999999998653211112 2567888
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCCHHHHHH
Q 025612 134 MILMLGKNKQIAMAEELFCELKKEG-LDPD----TRVYTEMIGVYLQVGMIDKAMETYETMKAS----GC-TPHKLTFTI 203 (250)
Q Consensus 134 li~~~~~~~~~~~A~~~~~~m~~~g-~~p~----~~ty~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~ty~~ 203 (250)
+-..|...|++++|.+.|++..+.. -.++ ..+|+.+-..|...|++++|.+.|++..+. +. .....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 8899999999999999998865420 0122 257888999999999999999999987652 33 334577999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 025612 204 LIRNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 204 li~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
+-..|.+.|++++|.+.+++..+.
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~ 293 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAY 293 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999887653
No 73
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.46 E-value=2.3e-05 Score=63.30 Aligned_cols=161 Identities=7% Similarity=0.007 Sum_probs=118.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-------HHHHHHHHcCCHHHHHHHHHHHHHhCC--CCCC--HHHHH
Q 025612 65 QAVHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-------DTLTELRRQNELDLALKVFNFVRKEVW--YKPD--LSLYS 132 (250)
Q Consensus 65 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-------~ll~~~~~~~~~~~a~~~~~~m~~~~g--~~~~--~~~y~ 132 (250)
..+..+...|++++|.+.+.+..+..-. ++.. .+...+...|++++|...|.+..+... ..+. ..+|+
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 4577788899999999999987754322 2111 244455677899999999998753211 1122 55899
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHh---C-CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHH
Q 025612 133 DMILMLGKNKQIAMAEELFCELKK---E-GLDP--DTRVYTEMIGVYLQVGMIDKAMETYETMKAS----GCTPH-KLTF 201 (250)
Q Consensus 133 ~li~~~~~~~~~~~A~~~~~~m~~---~-g~~p--~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~ty 201 (250)
.+-..|...|++++|...|++..+ . +-.+ ...+|+.+...|.+.|++++|...+++..+. +.... ..+|
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 999999999999999999998762 1 1111 1268899999999999999999999986542 22222 5778
Q ss_pred HHHHHHHHhcCCHHHH-HHHHHHHH
Q 025612 202 TILIRNLENAGEEELV-AAVRRDCI 225 (250)
Q Consensus 202 ~~li~~~~~~g~~~~a-~~~~~~m~ 225 (250)
..+-..|.+.|++++| ...++...
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 8999999999999999 77677654
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.46 E-value=2.5e-06 Score=74.22 Aligned_cols=164 Identities=10% Similarity=-0.071 Sum_probs=130.5
Q ss_pred cCCCcHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHH-HHHHHHHHc---------CCHHHHHHHHHHHHHhCCCC
Q 025612 56 SRVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLL-DTLTELRRQ---------NELDLALKVFNFVRKEVWYK 125 (250)
Q Consensus 56 ~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-~ll~~~~~~---------~~~~~a~~~~~~m~~~~g~~ 125 (250)
.+........+-..+...|++++|...|++..+..-.+... .+-..+... |++++|.+.|++..+. . +
T Consensus 133 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~-p 210 (474)
T 4abn_A 133 EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM-D-V 210 (474)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH-C-T
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh-C-C
Confidence 33444555567888889999999999999998654322222 466667777 9999999999998753 2 3
Q ss_pred CCHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 025612 126 PDLSLYSDMILMLGKN--------KQIAMAEELFCELKKEGLDP----DTRVYTEMIGVYLQVGMIDKAMETYETMKASG 193 (250)
Q Consensus 126 ~~~~~y~~li~~~~~~--------~~~~~A~~~~~~m~~~g~~p----~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g 193 (250)
-+...|..+-.+|... |++++|.+.|++..+. .| +...|..+-..|...|++++|.+.|++..+..
T Consensus 211 ~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 211 LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3588899999999988 9999999999998774 34 78999999999999999999999999987742
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 025612 194 CTPHKLTFTILIRNLENAGEEELVAAVRRDC 224 (250)
Q Consensus 194 ~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m 224 (250)
.-+...+..+-.++...|++++|.+.+..+
T Consensus 289 -p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 289 -PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 225567888999999999999988765444
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.45 E-value=3.1e-05 Score=59.85 Aligned_cols=126 Identities=11% Similarity=0.058 Sum_probs=104.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP-DTRVYTEMIGVYLQ 175 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~ 175 (250)
..-..+.+.|++++|...|+...+ ....++...+..+-.+|.+.|++++|.+.|++..+. .| +...|..+-..|..
T Consensus 12 ~~g~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 88 (228)
T 4i17_A 12 NEGNDALNAKNYAVAFEKYSEYLK-LTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAAYRD 88 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-HTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHh-ccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHH
Confidence 355677899999999999999875 332367777777999999999999999999998874 34 46778889999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 025612 176 VGMIDKAMETYETMKASGCTPH-K-------LTFTILIRNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 176 ~g~~~~a~~~~~~m~~~g~~p~-~-------~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
.|++++|...|++..+. .|+ . ..|..+-..+...|++++|.+.++...+.
T Consensus 89 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 89 MKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp TTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred cccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 99999999999998774 343 3 45777778888999999999999998875
No 76
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.42 E-value=2.8e-05 Score=68.28 Aligned_cols=162 Identities=12% Similarity=0.070 Sum_probs=116.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCc-cc-H-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HH
Q 025612 63 AIQAVHAMKLAKSSSKLEEGFQSRICRLLK-AD-L-LDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMIL-ML 138 (250)
Q Consensus 63 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~-~-~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~-~~ 138 (250)
+......+.+.|++++|..+|++..+..-. |. . ..+...+.+.|++++|.++|+...+... .+...|-.... .+
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~--~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--TRHHVYVTAALMEY 401 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT--CCTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC--CchHHHHHHHHHHH
Confidence 344566677889999999999998864321 11 1 1466667788999999999999875221 12233322221 23
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHH
Q 025612 139 GKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG-CTPH--KLTFTILIRNLENAGEEE 215 (250)
Q Consensus 139 ~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~--~~ty~~li~~~~~~g~~~ 215 (250)
...|++++|..+|+...+.. +-+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.+
T Consensus 402 ~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~ 480 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 480 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHH
T ss_pred HHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 36899999999999876641 2357889999999999999999999999988763 3332 457888888888899999
Q ss_pred HHHHHHHHHHhc
Q 025612 216 LVAAVRRDCIQY 227 (250)
Q Consensus 216 ~a~~~~~~m~~~ 227 (250)
.+..+.+.+.+.
T Consensus 481 ~~~~~~~r~~~~ 492 (530)
T 2ooe_A 481 SILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998887654
No 77
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.41 E-value=5.1e-05 Score=58.14 Aligned_cols=157 Identities=12% Similarity=0.011 Sum_probs=113.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHH----H----------------HHHHHHHcCCHHHHHHHHHHHHHhC
Q 025612 63 AIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLL----D----------------TLTELRRQNELDLALKVFNFVRKEV 122 (250)
Q Consensus 63 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~----~----------------ll~~~~~~~~~~~a~~~~~~m~~~~ 122 (250)
.+.....+...|++++|...|++..+.. |+.. . +-.++.+.|++++|...|+...+.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 83 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK- 83 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence 3344556778899999999999987542 3222 3 666788999999999999998753
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHH
Q 025612 123 WYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP-DTRVYTEMIGVYLQVGM--IDKAMETYETMKASGCTPHKL 199 (250)
Q Consensus 123 g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~ 199 (250)
. +-+...|..+-..|...|++++|...|++..+. .| +..+|..+-..|...|. ...+...++... .|+..
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 156 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS----SPTKM 156 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----CCCch
Confidence 2 236888999999999999999999999998774 34 57788888888776654 344555555543 34443
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 025612 200 --TFTILIRNLENAGEEELVAAVRRDCIQYVE 229 (250)
Q Consensus 200 --ty~~li~~~~~~g~~~~a~~~~~~m~~~g~ 229 (250)
.+...-.++...|++++|.+.|++..+..-
T Consensus 157 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 157 QYARYRDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 333344556678899999999999886543
No 78
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.41 E-value=3.3e-05 Score=67.83 Aligned_cols=152 Identities=11% Similarity=0.063 Sum_probs=116.7
Q ss_pred cCChh-------HHHHHHHHHHHhcCcccHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHH
Q 025612 73 AKSSS-------KLEEGFQSRICRLLKADLL----DTLTELRRQNELDLALKVFNFVRKEVWYKPD--LSLYSDMILMLG 139 (250)
Q Consensus 73 ~~~~~-------~a~~l~~~m~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~--~~~y~~li~~~~ 139 (250)
.|+.+ +|..++++..+. ..|+.. .+...+.+.|++++|..+|+...+ +.|+ ...|......+.
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~ 367 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFAR 367 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHH
Confidence 68877 899999987752 234322 577788899999999999999975 2454 358999999999
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 025612 140 KNKQIAMAEELFCELKKEGLDPD-TRVYTEMIG-VYLQVGMIDKAMETYETMKASGCTP-HKLTFTILIRNLENAGEEEL 216 (250)
Q Consensus 140 ~~~~~~~A~~~~~~m~~~g~~p~-~~ty~~li~-~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~ 216 (250)
+.|++++|.++|++..+. .|+ ...|-.... .+...|+.++|..+|+...+. .| +...|..++..+.+.|+.+.
T Consensus 368 ~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~ 443 (530)
T 2ooe_A 368 RAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNN 443 (530)
T ss_dssp HHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHH
T ss_pred HhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhh
Confidence 999999999999998775 232 222322222 234689999999999988764 24 57889999999999999999
Q ss_pred HHHHHHHHHhcc-CCch
Q 025612 217 VAAVRRDCIQYV-EFPE 232 (250)
Q Consensus 217 a~~~~~~m~~~g-~~pd 232 (250)
|..+|+.....+ ..|+
T Consensus 444 Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 444 TRVLFERVLTSGSLPPE 460 (530)
T ss_dssp HHHHHHHHHHSCCSCGG
T ss_pred HHHHHHHHHhccCCCHH
Confidence 999999988764 3444
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.41 E-value=2.1e-05 Score=65.89 Aligned_cols=158 Identities=9% Similarity=-0.072 Sum_probs=119.4
Q ss_pred HHhcCChhHHHHHHHHHHHhcC-ccc---HH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-----CHHHHHHHHH
Q 025612 70 MKLAKSSSKLEEGFQSRICRLL-KAD---LL----DTLTELRRQNELDLALKVFNFVRKEVWYKP-----DLSLYSDMIL 136 (250)
Q Consensus 70 ~~~~~~~~~a~~l~~~m~~~~~-~~~---~~----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~-----~~~~y~~li~ 136 (250)
+...|++++|...|++..+..- .++ .. .+-..+...|+++.|...+.+..+...-.+ ...+++.+-.
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 4577999999999999875421 122 11 467778899999999999988653211111 2567888899
Q ss_pred HHHcCCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHH
Q 025612 137 MLGKNKQIAMAEELFCELKKE----GLDP-DTRVYTEMIGVYLQVGMIDKAMETYETMKAS----GCTPHKLTFTILIRN 207 (250)
Q Consensus 137 ~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~ty~~li~~ 207 (250)
.|...|++++|.+.|++..+. |-.+ ...+++.+-..|...|++++|.+.|++..+. +......++..+-..
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 999999999999999886542 1111 2357888889999999999999999987651 222336788899999
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 025612 208 LENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 208 ~~~~g~~~~a~~~~~~m~~~ 227 (250)
|.+.|++++|.+.+++..+.
T Consensus 271 ~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999998764
No 80
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.38 E-value=0.00019 Score=55.18 Aligned_cols=164 Identities=10% Similarity=-0.134 Sum_probs=126.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 025612 62 EAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQN----ELDLALKVFNFVRKEVWYKPDLSLYSDMILM 137 (250)
Q Consensus 62 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~ 137 (250)
....+-..+...+++++|...|++..+.|.......+=..|.. + ++++|.+.|....+ .| +...+..|-..
T Consensus 20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-~g---~~~a~~~Lg~~ 94 (212)
T 3rjv_A 20 AQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-AG---SKSGEIVLARV 94 (212)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-TT---CHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHH
Confidence 3445566677789999999999999887754433344444545 6 89999999999865 33 67788888888
Q ss_pred HHc----CCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 025612 138 LGK----NKQIAMAEELFCELKKEGLD-PDTRVYTEMIGVYLQ----VGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208 (250)
Q Consensus 138 ~~~----~~~~~~A~~~~~~m~~~g~~-p~~~ty~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~ 208 (250)
|.. .+++++|.++|++..+.|.. -+...+..|-..|.. .++.++|...|++-.+.+ .+...+..|-..|
T Consensus 95 y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y 172 (212)
T 3rjv_A 95 LVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMF 172 (212)
T ss_dssp HTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHH
T ss_pred HHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHH
Confidence 887 89999999999998876521 126788888888888 889999999999988762 3445666777777
Q ss_pred Hhc-C-----CHHHHHHHHHHHHhccCCch
Q 025612 209 ENA-G-----EEELVAAVRRDCIQYVEFPE 232 (250)
Q Consensus 209 ~~~-g-----~~~~a~~~~~~m~~~g~~pd 232 (250)
... | ++++|.++|+...+.|...-
T Consensus 173 ~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A 202 (212)
T 3rjv_A 173 QQGEKGFIEPNKQKALHWLNVSCLEGFDTG 202 (212)
T ss_dssp HHCBTTTBCCCHHHHHHHHHHHHHHTCHHH
T ss_pred HcCCCCCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 653 3 89999999999999887543
No 81
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.37 E-value=1.7e-05 Score=64.18 Aligned_cols=155 Identities=13% Similarity=-0.018 Sum_probs=106.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcC-cccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHc
Q 025612 64 IQAVHAMKLAKSSSKLEEGFQSRICRLL-KADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMI-LMLGK 140 (250)
Q Consensus 64 ~~ll~~~~~~~~~~~a~~l~~~m~~~~~-~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li-~~~~~ 140 (250)
+.+...+...|++++|...|++.....- .++.. .+-..+.+.|++++|...++...+. .|+........ ..+..
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~~~~~l~~ 197 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLVAQIELLX 197 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHHHHHHHHh
Confidence 3445666778888888888888765332 12222 5777778888888888888877532 35543333222 23556
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHH
Q 025612 141 NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH---KLTFTILIRNLENAGEEELV 217 (250)
Q Consensus 141 ~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~ty~~li~~~~~~g~~~~a 217 (250)
.++.++|...|++..... +-+...+..+-..|...|++++|...|++..+.. |+ ...+..+...+...|+.+.|
T Consensus 198 ~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 198 QAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD--LTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred hcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--cccccchHHHHHHHHHHHcCCCCcH
Confidence 677777888887766541 3356778888888888888888888888877642 33 56788888888888888888
Q ss_pred HHHHHHH
Q 025612 218 AAVRRDC 224 (250)
Q Consensus 218 ~~~~~~m 224 (250)
...++.-
T Consensus 275 ~~~~r~a 281 (287)
T 3qou_A 275 ASXYRRQ 281 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
No 82
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.36 E-value=3.1e-05 Score=52.99 Aligned_cols=109 Identities=12% Similarity=0.081 Sum_probs=79.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 176 (250)
.+...+...|++++|.+.|+++.+.. +.+..++..+...|.+.|++++|...|+++.... +.+..+|..+...|...
T Consensus 14 ~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 14 NLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHh
Confidence 35567778888888888888876531 3457788888888889999999999998887642 34677888888888999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 025612 177 GMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209 (250)
Q Consensus 177 g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~ 209 (250)
|++++|...|+++.+.. .-+...+..+-..+.
T Consensus 91 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 91 GDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 99999999998887642 123444444444443
No 83
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.35 E-value=3.9e-05 Score=61.98 Aligned_cols=129 Identities=12% Similarity=0.062 Sum_probs=99.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCC----HHHHHH
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDL----SLYSDMILMLGKNKQIAMAEELFCELKKEGL-DPD----TRVYTE 168 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~----~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~ty~~ 168 (250)
.+..+.+.|++++|..++++..+.....|+. ..|..+...|...+++++|...|++...... .++ ..+|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4677889999999999999987533333332 2344577777888899999999999877322 223 347999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH----C-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 169 MIGVYLQVGMIDKAMETYETMKA----S-GCTPHK-LTFTILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 169 li~~~~~~g~~~~a~~~~~~m~~----~-g~~p~~-~ty~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
+-..|...|++++|...|++..+ . +..+.. .+|..+-..|.+.|++++|.+.+++..+
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999874 2 222323 4788999999999999999999988754
No 84
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.35 E-value=3.4e-05 Score=55.98 Aligned_cols=125 Identities=11% Similarity=0.029 Sum_probs=93.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 177 (250)
+-..+...|++++|...|....+.. +.+...|..+...|...|++++|...|++..... +.+...|..+...|...|
T Consensus 19 ~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~ 95 (166)
T 1a17_A 19 QANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 95 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc
Confidence 4556778899999999998876531 3357888888889999999999999998876642 335778888888999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 178 MIDKAMETYETMKASGCTPHKLTF--TILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 178 ~~~~a~~~~~~m~~~g~~p~~~ty--~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
++++|...|++..+.. .-+...+ ..+...+.+.|++++|.+.+.....
T Consensus 96 ~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 96 KFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999887642 1234444 3444447788899999888877643
No 85
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.35 E-value=1.3e-05 Score=59.63 Aligned_cols=158 Identities=15% Similarity=0.117 Sum_probs=113.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhc-CcccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 025612 63 AIQAVHAMKLAKSSSKLEEGFQSRICRL-LKADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILM-LG 139 (250)
Q Consensus 63 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~-~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~-~~ 139 (250)
.+.....+...|++++|...|++..+.. -.+... .+-..+.+.|++++|...|+...+. .|+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHH
Confidence 4455677888999999999999875422 112222 5777888999999999999987643 2344433322211 12
Q ss_pred cCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 025612 140 KNKQIAMAEELFCELKKEGLDP-DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP-HKLTFTILIRNLENAGEEELV 217 (250)
Q Consensus 140 ~~~~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a 217 (250)
..+...+|...|++..+. .| +...+..+-..|...|++++|...|++..+..=.+ +...+..+...+...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 222333578888887663 35 57889999999999999999999999998753221 356888999999999999999
Q ss_pred HHHHHHHH
Q 025612 218 AAVRRDCI 225 (250)
Q Consensus 218 ~~~~~~m~ 225 (250)
...|+...
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
No 86
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.33 E-value=1.5e-05 Score=66.47 Aligned_cols=151 Identities=9% Similarity=-0.109 Sum_probs=112.4
Q ss_pred hhHHHHHHHHHHHh----cCcccHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCC
Q 025612 76 SSKLEEGFQSRICR----LLKADLL----DTLTELRRQNELDLALKVFNFVRKEVWYKPD----LSLYSDMILMLGKNKQ 143 (250)
Q Consensus 76 ~~~a~~l~~~m~~~----~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~----~~~y~~li~~~~~~~~ 143 (250)
+++|...+.+.... +..+... .+-..+...|++++|...|++..+...-.++ ..+|..+-..|...|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 89999998886532 2222222 4677788999999999999987532111222 3478889999999999
Q ss_pred HHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCC
Q 025612 144 IAMAEELFCELKKE----GLDPD-TRVYTEMIGVYLQVGMIDKAMETYETMKAS----GCTP-HKLTFTILIRNLENAGE 213 (250)
Q Consensus 144 ~~~A~~~~~~m~~~----g~~p~-~~ty~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~ty~~li~~~~~~g~ 213 (250)
+++|...|++.... +-.+. ..++..+...|...|++++|...|++..+. +-.+ ...++..+-..|...|+
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN 322 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999999887542 11111 567888999999999999999999987643 2111 15678889999999999
Q ss_pred HHHHHHHHHHHHh
Q 025612 214 EELVAAVRRDCIQ 226 (250)
Q Consensus 214 ~~~a~~~~~~m~~ 226 (250)
+++|.+.+++..+
T Consensus 323 ~~~A~~~~~~al~ 335 (406)
T 3sf4_A 323 HDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988654
No 87
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.31 E-value=1.2e-05 Score=65.04 Aligned_cols=152 Identities=9% Similarity=-0.096 Sum_probs=112.0
Q ss_pred hhHHHHHHHHHHHh----cCcccHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCC
Q 025612 76 SSKLEEGFQSRICR----LLKADLL----DTLTELRRQNELDLALKVFNFVRKEVWYKPD----LSLYSDMILMLGKNKQ 143 (250)
Q Consensus 76 ~~~a~~l~~~m~~~----~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~----~~~y~~li~~~~~~~~ 143 (250)
+++|...+++.... +..+... .+-..+...|++++|.+.+++..+...-.++ ..++..+...|...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 88898888886532 2222222 4677788899999999999987532111112 3478889999999999
Q ss_pred HHHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCC
Q 025612 144 IAMAEELFCELKKEG-LDPD----TRVYTEMIGVYLQVGMIDKAMETYETMKAS----GCTP-HKLTFTILIRNLENAGE 213 (250)
Q Consensus 144 ~~~A~~~~~~m~~~g-~~p~----~~ty~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~ty~~li~~~~~~g~ 213 (250)
+++|.+.|++..... -..+ ..++..+...|...|++++|...+++..+. +-.+ ...++..+-..|.+.|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 999999998865421 0112 567888889999999999999999987543 2111 24578889999999999
Q ss_pred HHHHHHHHHHHHhc
Q 025612 214 EELVAAVRRDCIQY 227 (250)
Q Consensus 214 ~~~a~~~~~~m~~~ 227 (250)
+++|.+.+++..+.
T Consensus 319 ~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 319 HDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999988754
No 88
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.30 E-value=2.4e-05 Score=58.96 Aligned_cols=155 Identities=14% Similarity=-0.019 Sum_probs=108.6
Q ss_pred HhcCChhHHHHHHHHHHHhcCcccHH----HHHHHHHHcCCHHHHHHHHHHHHH---hCCCCC-CHHHHHHHHHHHHcCC
Q 025612 71 KLAKSSSKLEEGFQSRICRLLKADLL----DTLTELRRQNELDLALKVFNFVRK---EVWYKP-DLSLYSDMILMLGKNK 142 (250)
Q Consensus 71 ~~~~~~~~a~~l~~~m~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~---~~g~~~-~~~~y~~li~~~~~~~ 142 (250)
...|++++|.++++.... .++... .+-..+...|++++|...|++..+ ..+..+ ...+++.+-..|...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA--HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHT--STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 456889999985555432 222222 466777889999999999998653 122222 3567888889999999
Q ss_pred CHHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhc
Q 025612 143 QIAMAEELFCELKKE----GLDP--DTRVYTEMIGVYLQVGMIDKAMETYETMKAS----GCTP-HKLTFTILIRNLENA 211 (250)
Q Consensus 143 ~~~~A~~~~~~m~~~----g~~p--~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~ty~~li~~~~~~ 211 (250)
++++|.+.|++.... |-.| ....++.+-..|...|++++|...+++.... +-.+ -..++..+-..+...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 999999999886542 2121 2456788888999999999999999886532 2111 123467888899999
Q ss_pred CCHHHHHHHHHHHHhc
Q 025612 212 GEEELVAAVRRDCIQY 227 (250)
Q Consensus 212 g~~~~a~~~~~~m~~~ 227 (250)
|++++|.+.+++..+.
T Consensus 161 g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 161 KNLLEAQQHWLRARDI 176 (203)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999887653
No 89
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.29 E-value=0.00047 Score=59.76 Aligned_cols=154 Identities=10% Similarity=-0.029 Sum_probs=96.3
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHHhcCcccHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 025612 65 QAVHAMKL----AKSSSKLEEGFQSRICRLLKADLLDTLTELRR----QNELDLALKVFNFVRKEVWYKPDLSLYSDMIL 136 (250)
Q Consensus 65 ~ll~~~~~----~~~~~~a~~l~~~m~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~ 136 (250)
.+-..+.. .++.++|...|++..+.|.......+-..|.. .+++++|.+.|+...+ .| +...+..|-.
T Consensus 44 ~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~Lg~ 119 (490)
T 2xm6_A 44 ELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL-KG---LPQAQQNLGV 119 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHH
Confidence 34444555 67777777777777666544333345555555 6777777777777654 32 4555666666
Q ss_pred HHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 025612 137 MLGK----NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ----VGMIDKAMETYETMKASGCTPHKLTFTILIRNL 208 (250)
Q Consensus 137 ~~~~----~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~ 208 (250)
.|.. .+++++|.+.|++..+.| +...+..|-..|.. .++.++|.+.|++..+.| +...+..|-..|
T Consensus 120 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y 193 (490)
T 2xm6_A 120 MYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMY 193 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 6666 667777777777766654 45556666666665 566777777777666653 455666666666
Q ss_pred Hh----cCCHHHHHHHHHHHHhcc
Q 025612 209 EN----AGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 209 ~~----~g~~~~a~~~~~~m~~~g 228 (250)
.. .+++++|.++|+...+.|
T Consensus 194 ~~g~g~~~~~~~A~~~~~~a~~~~ 217 (490)
T 2xm6_A 194 SRGLGVERNDAISAQWYRKSATSG 217 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hcCCCCCcCHHHHHHHHHHHHHCC
Confidence 65 566666666666665554
No 90
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.27 E-value=5.6e-05 Score=61.60 Aligned_cols=159 Identities=9% Similarity=-0.024 Sum_probs=114.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhc----CcccHH----HHHHHHHHcCCHHHHHHHHHHHHHh---CCCCC-CHHHHHH
Q 025612 66 AVHAMKLAKSSSKLEEGFQSRICRL----LKADLL----DTLTELRRQNELDLALKVFNFVRKE---VWYKP-DLSLYSD 133 (250)
Q Consensus 66 ll~~~~~~~~~~~a~~l~~~m~~~~----~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~---~g~~~-~~~~y~~ 133 (250)
+...+...|++++|...|.+..... -.+... .+-..|.+.|++++|...|++..+- .|-.. ...+|+.
T Consensus 42 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 121 (307)
T 2ifu_A 42 AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDR 121 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3556778899999999999876432 111111 3667777889999999999875431 22111 1467888
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHH
Q 025612 134 MILMLGKNKQIAMAEELFCELKKE----GLDP-DTRVYTEMIGVYLQVGMIDKAMETYETMKAS----GCTPHK-LTFTI 203 (250)
Q Consensus 134 li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~-~ty~~ 203 (250)
+-..|.. |++++|+..|++..+. |-.+ ...+|+.+-..|.+.|++++|...|++.... +..++. .++..
T Consensus 122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (307)
T 2ifu_A 122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA 200 (307)
T ss_dssp HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 8888988 9999999999886542 1111 1467888899999999999999999987652 322222 36777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 025612 204 LIRNLENAGEEELVAAVRRDCI 225 (250)
Q Consensus 204 li~~~~~~g~~~~a~~~~~~m~ 225 (250)
+...+...|++++|.+.|++..
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHh
Confidence 7778888899999999999877
No 91
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.27 E-value=1.5e-05 Score=67.03 Aligned_cols=162 Identities=11% Similarity=-0.045 Sum_probs=113.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhcCc-ccH----H-HHHHHHHHcCCHHHHHHHHHHHHHh---CCC-CCCHHHHHHH
Q 025612 65 QAVHAMKLAKSSSKLEEGFQSRICRLLK-ADL----L-DTLTELRRQNELDLALKVFNFVRKE---VWY-KPDLSLYSDM 134 (250)
Q Consensus 65 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~----~-~ll~~~~~~~~~~~a~~~~~~m~~~---~g~-~~~~~~y~~l 134 (250)
.+-..+...|++++|...|++..+..-. +.. . .+-..+...|++++|...|++..+. .+- ......|..+
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 3456677889999999999998875332 211 1 4666777889999999998886531 111 1235677888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCC-----------------hHHHHHHHHHHHHC
Q 025612 135 ILMLGKNKQIAMAEELFCELKKE----GL-DPDTRVYTEMIGVYLQVGM-----------------IDKAMETYETMKAS 192 (250)
Q Consensus 135 i~~~~~~~~~~~A~~~~~~m~~~----g~-~p~~~ty~~li~~~~~~g~-----------------~~~a~~~~~~m~~~ 192 (250)
-..|...|++++|...|++.... +- .....+|..+-..|...|+ +++|.+.+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 88889999999999988876542 11 1124567788888888888 88888888775432
Q ss_pred ----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 193 ----GCTP-HKLTFTILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 193 ----g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
+-.| ...++..+-..|...|++++|.+.+++..+
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 251 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLR 251 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 2212 234677788888888888888888887654
No 92
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.27 E-value=9.6e-05 Score=49.96 Aligned_cols=99 Identities=13% Similarity=-0.001 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 025612 128 LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN 207 (250)
Q Consensus 128 ~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~ 207 (250)
...|..+...+...|++++|...|++..... +.+...|..+...|...|++++|...+++..+.. ..+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3455556666666666666666666655431 2245556666666666666666666666665532 1245566666666
Q ss_pred HHhcCCHHHHHHHHHHHHhcc
Q 025612 208 LENAGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 208 ~~~~g~~~~a~~~~~~m~~~g 228 (250)
+...|++++|.+.++...+.+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhhHHHHHHHHHHHHHcC
Confidence 666667777766666665543
No 93
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.25 E-value=3.2e-05 Score=65.01 Aligned_cols=165 Identities=11% Similarity=-0.061 Sum_probs=121.5
Q ss_pred HHHHHHHhcCC-----------------hhHHHHHHHHHHHh----cCcccHH----HHHHHHHHcCCHHHHHHHHHHHH
Q 025612 65 QAVHAMKLAKS-----------------SSKLEEGFQSRICR----LLKADLL----DTLTELRRQNELDLALKVFNFVR 119 (250)
Q Consensus 65 ~ll~~~~~~~~-----------------~~~a~~l~~~m~~~----~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~ 119 (250)
.+...+...|+ +++|...+.+..+. +..+... .+-..+...|++++|...|++..
T Consensus 171 ~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 250 (411)
T 4a1s_A 171 NLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERL 250 (411)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 34566777788 88999888886532 2222222 47777889999999999999875
Q ss_pred HhCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC--CC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 025612 120 KEVWYKPD----LSLYSDMILMLGKNKQIAMAEELFCELKKEG--LD---PDTRVYTEMIGVYLQVGMIDKAMETYETMK 190 (250)
Q Consensus 120 ~~~g~~~~----~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g--~~---p~~~ty~~li~~~~~~g~~~~a~~~~~~m~ 190 (250)
+...-.++ ...|..+...|...|++++|...|++..... .. ....+|..+...|...|++++|...|++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 251 RIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42111112 3478899999999999999999998875431 10 125678888999999999999999999876
Q ss_pred HC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 025612 191 AS----GCTP-HKLTFTILIRNLENAGEEELVAAVRRDCIQYVE 229 (250)
Q Consensus 191 ~~----g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~ 229 (250)
.. +..+ ...+|..+-..|...|++++|.+.+++..+..-
T Consensus 331 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 331 AIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 53 2111 235788899999999999999999999876543
No 94
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.24 E-value=0.00021 Score=54.21 Aligned_cols=123 Identities=11% Similarity=-0.042 Sum_probs=99.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhcCcccHH---HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 025612 65 QAVHAMKLAKSSSKLEEGFQSRICRLLKADLL---DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141 (250)
Q Consensus 65 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~---~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~ 141 (250)
.....+...|++++|...|++.. .|+.. .+-..+.+.|++++|...|+...+.. +.+...|..+-.+|...
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHc
Confidence 34566778899999999999864 33333 57778889999999999999987532 34678899999999999
Q ss_pred CCHHHHHHHHHHHHhCC--------------CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 025612 142 KQIAMAEELFCELKKEG--------------LDP-DTRVYTEMIGVYLQVGMIDKAMETYETMKASG 193 (250)
Q Consensus 142 ~~~~~A~~~~~~m~~~g--------------~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g 193 (250)
|++++|...|++..+.. ..| +...|..+-..|.+.|++++|...|+...+..
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999999987742 111 23678888999999999999999999988753
No 95
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.23 E-value=8.1e-05 Score=51.68 Aligned_cols=97 Identities=12% Similarity=0.078 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 025612 128 LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN 207 (250)
Q Consensus 128 ~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~ 207 (250)
...|..+-..|.+.|++++|.+.|++..... +.+...|..+...|...|++++|...|++..+.. ..+...+..+-..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 4445555555555555555555555544321 1234455555555555555555555555544421 1234455555555
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 025612 208 LENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 208 ~~~~g~~~~a~~~~~~m~~ 226 (250)
+.+.|++++|.+.++...+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555543
No 96
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.23 E-value=0.00066 Score=58.82 Aligned_cols=157 Identities=10% Similarity=-0.026 Sum_probs=101.8
Q ss_pred HHHHHHHHHh----cCChhHHHHHHHHHHHhcCcccHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 025612 63 AIQAVHAMKL----AKSSSKLEEGFQSRICRLLKADLLDTLTELRR----QNELDLALKVFNFVRKEVWYKPDLSLYSDM 134 (250)
Q Consensus 63 ~~~ll~~~~~----~~~~~~a~~l~~~m~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~g~~~~~~~y~~l 134 (250)
...+-..+.. .++.++|...|++..+.|.......+-..|.. .+++++|...|+...+ .| +...+..|
T Consensus 78 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~L 153 (490)
T 2xm6_A 78 EYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE-QG---RDSGQQSM 153 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHH
Confidence 3334455555 67888888888887776643333344445555 6778888888887754 33 45666666
Q ss_pred HHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 025612 135 ILMLGK----NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ----VGMIDKAMETYETMKASGCTPHKLTFTILIR 206 (250)
Q Consensus 135 i~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~ 206 (250)
-..|.. .+++++|.+.|++..+.| +...+..|-..|.. .++.++|.+.|++..+.| +...+..+-.
T Consensus 154 g~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 227 (490)
T 2xm6_A 154 GDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLAD 227 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 666665 677777877777776654 56666666666666 677777777777766654 4455556666
Q ss_pred HHHh----cCCHHHHHHHHHHHHhccC
Q 025612 207 NLEN----AGEEELVAAVRRDCIQYVE 229 (250)
Q Consensus 207 ~~~~----~g~~~~a~~~~~~m~~~g~ 229 (250)
.|.. .+++++|.++|+...+.|.
T Consensus 228 ~y~~g~g~~~~~~~A~~~~~~a~~~~~ 254 (490)
T 2xm6_A 228 MYYFGIGVTQDYTQSRVLFSQSAEQGN 254 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHTTTC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 6654 5666777766666655543
No 97
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.21 E-value=5e-05 Score=61.22 Aligned_cols=160 Identities=11% Similarity=-0.044 Sum_probs=89.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCc-cc----HH-HHHHHHHHcCCHHHHHHHHHHHHHh---CCCCC-CHHHHHHHHH
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLK-AD----LL-DTLTELRRQNELDLALKVFNFVRKE---VWYKP-DLSLYSDMIL 136 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~-~~----~~-~ll~~~~~~~~~~~a~~~~~~m~~~---~g~~~-~~~~y~~li~ 136 (250)
-..+...|++++|...|++..+.... +. .. .+-..+...|++++|.+.++...+. .+-.| ....+..+-.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 44555667777777777776654321 11 01 3555666677777777777664321 11111 2445666666
Q ss_pred HHHcCCCHHHHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHHH
Q 025612 137 MLGKNKQIAMAEELFCELKKE-GLDPD----TRVYTEMIGVYLQVGM--------------------IDKAMETYETMKA 191 (250)
Q Consensus 137 ~~~~~~~~~~A~~~~~~m~~~-g~~p~----~~ty~~li~~~~~~g~--------------------~~~a~~~~~~m~~ 191 (250)
.|...|++++|...|++..+. .-.++ ..+|..+...|...|+ +++|.+.+++...
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 777777777777777665331 00112 3356666666667777 6777766665432
Q ss_pred C----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 192 S----GCTP-HKLTFTILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 192 ~----g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
. +-.| ...++..+-..+...|++++|.+.+++..+
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 211 (338)
T 3ro2_A 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 211 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1 1111 123566666666677777777777666543
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.20 E-value=0.00025 Score=54.48 Aligned_cols=143 Identities=6% Similarity=-0.071 Sum_probs=114.9
Q ss_pred hHHHHHHHHHHHhcCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC----CHHHHHHHHH
Q 025612 77 SKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNK----QIAMAEELFC 152 (250)
Q Consensus 77 ~~a~~l~~~m~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~----~~~~A~~~~~ 152 (250)
++|...|.+..+.|.......+-..+...+++++|.+.|....+ .| +...+..|=..|.. + ++++|.+.|+
T Consensus 3 ~eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAA-QG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 35667777777766554444566677789999999999999875 44 67778888888887 6 8999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 025612 153 ELKKEGLDPDTRVYTEMIGVYLQ----VGMIDKAMETYETMKASGCT-PHKLTFTILIRNLEN----AGEEELVAAVRRD 223 (250)
Q Consensus 153 ~m~~~g~~p~~~ty~~li~~~~~----~g~~~~a~~~~~~m~~~g~~-p~~~ty~~li~~~~~----~g~~~~a~~~~~~ 223 (250)
+..+.| +...+..|-..|.. .++.++|.+.|++..+.|.. -+...+..|-..|.. .+++++|.++|+.
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 998765 67788888888877 88999999999999887632 026788888888888 7899999999999
Q ss_pred HHhc
Q 025612 224 CIQY 227 (250)
Q Consensus 224 m~~~ 227 (250)
..+.
T Consensus 155 A~~~ 158 (212)
T 3rjv_A 155 SSSL 158 (212)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 9877
No 99
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.20 E-value=6.8e-05 Score=51.70 Aligned_cols=112 Identities=10% Similarity=-0.039 Sum_probs=69.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 177 (250)
+-..+...|++++|...|+...+.. +.+...|..+...|...|++++|.+.+++..... +.+...|..+...|.+.|
T Consensus 18 ~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 94 (131)
T 2vyi_A 18 EGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLN 94 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhC
Confidence 4455566777777777777765421 2346666777777777777777777777665531 224566666677777777
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 025612 178 MIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213 (250)
Q Consensus 178 ~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~ 213 (250)
++++|...|++..+.. ..+...+..+..++.+.|+
T Consensus 95 ~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 95 KHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 7777777777765542 1244555566666655554
No 100
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.20 E-value=3.7e-05 Score=64.14 Aligned_cols=162 Identities=12% Similarity=-0.016 Sum_probs=105.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHh----cCcccHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC----HHHHH
Q 025612 65 QAVHAMKLAKSSSKLEEGFQSRICR----LLKADLL----DTLTELRRQNELDLALKVFNFVRKEVWYKPD----LSLYS 132 (250)
Q Consensus 65 ~ll~~~~~~~~~~~a~~l~~~m~~~----~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~----~~~y~ 132 (250)
.+...+...|++++|...+++.... +..|... .+-..+...|++++|...|++..+...-.++ ..++.
T Consensus 52 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 131 (406)
T 3sf4_A 52 QLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY 131 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 4466677778888888888876532 2223222 3566677888888888888876431111112 44677
Q ss_pred HHHHHHHcCCC--------------------HHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 025612 133 DMILMLGKNKQ--------------------IAMAEELFCELKK----EGLDP-DTRVYTEMIGVYLQVGMIDKAMETYE 187 (250)
Q Consensus 133 ~li~~~~~~~~--------------------~~~A~~~~~~m~~----~g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~ 187 (250)
.+-..|...|+ +++|.+.+++... .+-.| ...+|..+...|...|++++|...|+
T Consensus 132 ~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 211 (406)
T 3sf4_A 132 NLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHE 211 (406)
T ss_dssp HHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHH
T ss_pred HHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 77788888888 8888888776533 11111 13467777788888888888888887
Q ss_pred HHHHC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 188 TMKAS-GCTPH----KLTFTILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 188 ~m~~~-g~~p~----~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
+..+. .-.++ ..+|..+-..|...|++++|.+.+++..+
T Consensus 212 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 255 (406)
T 3sf4_A 212 QRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 255 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 76532 00122 23677777888888888888888877654
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.19 E-value=6.3e-05 Score=68.36 Aligned_cols=152 Identities=10% Similarity=-0.003 Sum_probs=123.2
Q ss_pred HhcCChhHHHHHHHHHHH------hcCcccHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 025612 71 KLAKSSSKLEEGFQSRIC------RLLKADLL----DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK 140 (250)
Q Consensus 71 ~~~~~~~~a~~l~~~m~~------~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~ 140 (250)
...|++++|.+.+++... ....|+.. .+-.++...|++++|.+.|++..+.. +-+...|..+-.+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHHHH
Confidence 667999999999999871 11223221 46677889999999999999987532 3367889999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 025612 141 NKQIAMAEELFCELKKEGLDP-DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAA 219 (250)
Q Consensus 141 ~~~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 219 (250)
.|++++|.+.|++..+. .| +...|..+-..|.+.|++++ .+.|++..+.. .-+...|..+-.++.+.|++++|.+
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998764 34 56788899999999999999 99999987743 2256789999999999999999999
Q ss_pred HHHHHHhcc
Q 025612 220 VRRDCIQYV 228 (250)
Q Consensus 220 ~~~~m~~~g 228 (250)
.|++..+..
T Consensus 556 ~~~~al~l~ 564 (681)
T 2pzi_A 556 TLDEVPPTS 564 (681)
T ss_dssp HHHTSCTTS
T ss_pred HHHhhcccC
Confidence 998876644
No 102
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=0.00026 Score=50.06 Aligned_cols=99 Identities=12% Similarity=0.001 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 025612 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD----TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFT 202 (250)
Q Consensus 127 ~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~----~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~ 202 (250)
+...+..+-..+...|++++|...|++..+. .|+ ...|..+...|...|++++|...+++..+.. ..+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4566667777777777777777777776653 355 5666666777777777777777777765532 12456666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc
Q 025612 203 ILIRNLENAGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 203 ~li~~~~~~g~~~~a~~~~~~m~~~g 228 (250)
.+-.+|...|++++|.+.|+...+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 77777777777777777777766543
No 103
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.16 E-value=0.00019 Score=49.34 Aligned_cols=101 Identities=8% Similarity=0.028 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 025612 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206 (250)
Q Consensus 127 ~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~ 206 (250)
+...|..+...+...|++++|...|++..... +.+...|..+...|...|++++|...++...+.. ..+...+..+-.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 46678888899999999999999999987642 3367889999999999999999999999987753 235788899999
Q ss_pred HHHhcCCHHHHHHHHHHHHhccC
Q 025612 207 NLENAGEEELVAAVRRDCIQYVE 229 (250)
Q Consensus 207 ~~~~~g~~~~a~~~~~~m~~~g~ 229 (250)
.+.+.|+++.|.+.++...+..-
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHhCCHHHHHHHHHHHHhcCc
Confidence 99999999999999999887643
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.15 E-value=9.2e-05 Score=53.65 Aligned_cols=134 Identities=13% Similarity=0.041 Sum_probs=93.4
Q ss_pred hcCChhHHHHHHHHHHHhcCcccHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 025612 72 LAKSSSKLEEGFQSRICRLLKADLL----DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMA 147 (250)
Q Consensus 72 ~~~~~~~a~~l~~~m~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A 147 (250)
..|++++|...+..... ..|+.. .+-..|.+.|++++|.+.|+...+. . +-+...|..+-.+|.+.|++++|
T Consensus 9 ~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~-~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 9 SKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV-Q-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHcCchHHH
Confidence 34667777777776542 233322 4667788889999999999887653 1 23578888888889999999999
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHH-HHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 025612 148 EELFCELKKEGLDP-DTRVYTEMIGVYLQVGMIDKAMET-YETMKASGCTP-HKLTFTILIRNLENAGE 213 (250)
Q Consensus 148 ~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~-~~~m~~~g~~p-~~~ty~~li~~~~~~g~ 213 (250)
...|++..+. .| +...|..+-..|.+.|+.+++.+. +++..+. .| +...|...-..+.+.|+
T Consensus 85 ~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 85 VECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 9998887763 34 467788888888888888776654 4666552 35 45666666666666553
No 105
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.15 E-value=0.00012 Score=50.39 Aligned_cols=96 Identities=13% Similarity=0.059 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCC----HHHHHH
Q 025612 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG--CTPH----KLTFTI 203 (250)
Q Consensus 130 ~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~ty~~ 203 (250)
.|..+-..|...|++++|...|++..... +.+...|..+...|...|++++|...|++..... ..++ ..+|..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444444444555555555554443321 1234444444444455555555555554443321 0111 344444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 025612 204 LIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 204 li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
+-.++.+.|+++.|.+.++...+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 44555555555555555555444
No 106
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.15 E-value=0.00012 Score=52.94 Aligned_cols=125 Identities=11% Similarity=-0.073 Sum_probs=94.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 025612 63 AIQAVHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK 140 (250)
Q Consensus 63 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~ 140 (250)
...+...+...|++++|...|++..+..-. +... .+-..+...|++++|...|+...+.. +.+...|..+-..|.+
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHH
Confidence 334566777889999999999998764322 2222 57777889999999999999987532 3467889999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCChHHHHHHHHHHH
Q 025612 141 NKQIAMAEELFCELKKEGLDPDTRVYTE--MIGVYLQVGMIDKAMETYETMK 190 (250)
Q Consensus 141 ~~~~~~A~~~~~~m~~~g~~p~~~ty~~--li~~~~~~g~~~~a~~~~~~m~ 190 (250)
.|++++|...|++..+.. +-+...+.. +...+.+.|++++|...+....
T Consensus 94 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999987642 224445533 3444778899999999988764
No 107
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.13 E-value=0.00017 Score=60.23 Aligned_cols=161 Identities=13% Similarity=-0.020 Sum_probs=109.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcC-----cccHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC----HHH
Q 025612 64 IQAVHAMKLAKSSSKLEEGFQSRICRLL-----KADLL----DTLTELRRQNELDLALKVFNFVRKEVWYKPD----LSL 130 (250)
Q Consensus 64 ~~ll~~~~~~~~~~~a~~l~~~m~~~~~-----~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~----~~~ 130 (250)
..+-..+...|++++|...+.+..+..- .+... .+-..|...|++++|...|++..+...-.++ ..+
T Consensus 147 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 226 (383)
T 3ulq_A 147 FKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRT 226 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 3456677788999999999998764211 22222 3567778889999999999886531111122 357
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHHHH
Q 025612 131 YSDMILMLGKNKQIAMAEELFCELKKE----GL-DPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS----GCTPHKLTF 201 (250)
Q Consensus 131 y~~li~~~~~~~~~~~A~~~~~~m~~~----g~-~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~ty 201 (250)
|+.+-..|...|++++|.+.|++..+. +- +....++..+-..|.+.|++++|...+++..+. +-......+
T Consensus 227 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 306 (383)
T 3ulq_A 227 LYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEF 306 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888889999999999999999887651 33 334677888889999999999999999876542 222222335
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHH
Q 025612 202 TILIRNLENAGE---EELVAAVRRDC 224 (250)
Q Consensus 202 ~~li~~~~~~g~---~~~a~~~~~~m 224 (250)
..+-..|...|+ +++|..+++..
T Consensus 307 ~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 307 EFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 666666777777 44555544443
No 108
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.13 E-value=0.0002 Score=49.67 Aligned_cols=95 Identities=8% Similarity=-0.054 Sum_probs=47.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 025612 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLE 209 (250)
Q Consensus 130 ~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~ 209 (250)
.|..+-..+.+.|++++|...|++..+.. +.+...|..+-.+|.+.|++++|...|++..+.. .-+...|..+-.++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34444445555555555555555544321 1234555555555555555555555555554431 113445555555555
Q ss_pred hcCCHHHHHHHHHHHHh
Q 025612 210 NAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 210 ~~g~~~~a~~~~~~m~~ 226 (250)
..|++++|.+.|+...+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555555544
No 109
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.13 E-value=0.00032 Score=51.06 Aligned_cols=96 Identities=14% Similarity=0.079 Sum_probs=64.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 177 (250)
+-..+.+.|++++|...|+...+. . +-+...|..+-.+|...|++++|...|++..... +-+...|..+-.+|.+.|
T Consensus 42 lg~~~~~~g~~~eA~~~~~~al~~-~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg 118 (151)
T 3gyz_A 42 YAYDFYNKGRIEEAEVFFRFLCIY-D-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLK 118 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 445566777777777777777642 1 2246677777777777777777777777766531 124566777777777777
Q ss_pred ChHHHHHHHHHHHHCCCCCCH
Q 025612 178 MIDKAMETYETMKASGCTPHK 198 (250)
Q Consensus 178 ~~~~a~~~~~~m~~~g~~p~~ 198 (250)
++++|...|++..+. .|+.
T Consensus 119 ~~~eA~~~~~~al~l--~~~~ 137 (151)
T 3gyz_A 119 APLKAKECFELVIQH--SNDE 137 (151)
T ss_dssp CHHHHHHHHHHHHHH--CCCH
T ss_pred CHHHHHHHHHHHHHh--CCCH
Confidence 777777777777663 3554
No 110
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.12 E-value=6.1e-05 Score=55.74 Aligned_cols=119 Identities=9% Similarity=0.029 Sum_probs=66.6
Q ss_pred HhcCChhHHHHHHHHHHHhcC-cccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHcCCCH--H
Q 025612 71 KLAKSSSKLEEGFQSRICRLL-KADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILM-LGKNKQI--A 145 (250)
Q Consensus 71 ~~~~~~~~a~~l~~~m~~~~~-~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~-~~~~~~~--~ 145 (250)
...|++++|...++...+..- .+... .+-..+...|++++|...|+...+.. +.+...|..+-.. |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchH
Confidence 445666777777766654321 11222 45555666677777777777665421 2245556666666 5566666 7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 025612 146 MAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS 192 (250)
Q Consensus 146 ~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 192 (250)
+|...|++..... +-+...|..+...|...|++++|...|++..+.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777776665531 123555666666666777777777777666553
No 111
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.12 E-value=0.00012 Score=51.53 Aligned_cols=89 Identities=17% Similarity=0.121 Sum_probs=54.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 025612 100 TELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179 (250)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 179 (250)
..+.+.|++++|.+.|++..+.. +.+...|..+-.+|.+.|++++|+..|++..+.. +.+...|..+-.+|...|++
T Consensus 21 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 97 (126)
T 4gco_A 21 NEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMREW 97 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCCH
Confidence 45566667777777766655421 2245666666666666777777766666655431 22355666666666666666
Q ss_pred HHHHHHHHHHHH
Q 025612 180 DKAMETYETMKA 191 (250)
Q Consensus 180 ~~a~~~~~~m~~ 191 (250)
++|.+.|++..+
T Consensus 98 ~~A~~~~~~al~ 109 (126)
T 4gco_A 98 SKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666655
No 112
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.12 E-value=0.00033 Score=49.14 Aligned_cols=103 Identities=12% Similarity=0.039 Sum_probs=86.2
Q ss_pred CCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 025612 124 YKPD-LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFT 202 (250)
Q Consensus 124 ~~~~-~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~ 202 (250)
+.|+ ...|...=..|.+.|++++|.+.|++..+.. +-+...|..+-.+|.+.|++++|+..|++..+.. ..+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHH
Confidence 3443 4567777788999999999999999987642 3468899999999999999999999999987743 23578899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc
Q 025612 203 ILIRNLENAGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 203 ~li~~~~~~g~~~~a~~~~~~m~~~g 228 (250)
.+-.+|...|++++|.+.|+...+..
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 99999999999999999999988754
No 113
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.11 E-value=4.8e-05 Score=51.08 Aligned_cols=96 Identities=9% Similarity=0.020 Sum_probs=51.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 025612 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP--HKLTFTILIRN 207 (250)
Q Consensus 130 ~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~ty~~li~~ 207 (250)
.|..+-..+.+.|++++|...|++..+.. +.+...|..+...|...|++++|...|++..+.. .. +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 34445555555666666666665554431 2234555555555666666666666666555431 11 34555555566
Q ss_pred HHhc-CCHHHHHHHHHHHHhc
Q 025612 208 LENA-GEEELVAAVRRDCIQY 227 (250)
Q Consensus 208 ~~~~-g~~~~a~~~~~~m~~~ 227 (250)
+.+. |++++|.+.+....+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 6666 6666666666555443
No 114
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.11 E-value=0.00016 Score=59.75 Aligned_cols=125 Identities=12% Similarity=0.030 Sum_probs=95.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPD-------------LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~-------------~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 164 (250)
+-..+.+.|++++|...|+...+...-.++ ...|..+-.+|.+.|++++|...|++..+.. +-+..
T Consensus 153 ~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 231 (336)
T 1p5q_A 153 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEK 231 (336)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHH
Confidence 455667778888888888877642211110 5788999999999999999999999887642 33678
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 025612 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTP-HKLTFTILIRNLENAGEEELV-AAVRRDCI 225 (250)
Q Consensus 165 ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a-~~~~~~m~ 225 (250)
.|..+-.+|...|++++|...|++..+. .| +...+..+-.++.+.|+.+++ .++++.|.
T Consensus 232 a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 232 GLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999998774 34 567888888889999998888 44566554
No 115
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.11 E-value=0.00014 Score=50.38 Aligned_cols=110 Identities=17% Similarity=0.051 Sum_probs=69.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 177 (250)
+-..+.+.|++++|...|+...+ . .+.+...|..+-..|...|++++|.+.|++..+.. +.+...|..+...|.+.|
T Consensus 22 ~~~~~~~~~~~~~A~~~~~~al~-~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~ 98 (133)
T 2lni_A 22 KGNECFQKGDYPQAMKHYTEAIK-R-NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAMK 98 (133)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHT-T-CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-c-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHh
Confidence 44555667777777777776653 1 12356667777777777777777777777766531 235667777777777777
Q ss_pred ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 025612 178 MIDKAMETYETMKASGCTP-HKLTFTILIRNLENAG 212 (250)
Q Consensus 178 ~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g 212 (250)
++++|.+.|++..+. .| +...+..+-..+.+.|
T Consensus 99 ~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 99 DYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp CHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhc
Confidence 788877777776653 23 2344444545544433
No 116
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.08 E-value=0.00047 Score=57.20 Aligned_cols=161 Identities=11% Similarity=-0.088 Sum_probs=112.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhc----Cc--ccHH----HHHHHHHHcCCHHHHHHHHHHHHHhC---CCCCCHHHHH
Q 025612 66 AVHAMKLAKSSSKLEEGFQSRICRL----LK--ADLL----DTLTELRRQNELDLALKVFNFVRKEV---WYKPDLSLYS 132 (250)
Q Consensus 66 ll~~~~~~~~~~~a~~l~~~m~~~~----~~--~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~---g~~~~~~~y~ 132 (250)
+-..+...|++++|...+++..... .. |... .+-..+...|++++|...+++..+.. +......+|.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 4555677899999999999876432 21 3222 35567789999999999999875421 1111246788
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCC--HHHHH----HHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHH
Q 025612 133 DMILMLGKNKQIAMAEELFCELKKEGLDPD--TRVYT----EMIGVYLQVGMIDKAMETYETMKASGCTP---HKLTFTI 203 (250)
Q Consensus 133 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~ty~----~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~ty~~ 203 (250)
.+-..+...|++++|...+++.....-.++ ..... ..+..+...|++++|...+++.....-.+ ....+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 888899999999999999998764311111 22111 23344778999999999998876543211 1335677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 025612 204 LIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 204 li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
+...+...|++++|.+.++....
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 88899999999999999988754
No 117
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.08 E-value=0.00044 Score=57.40 Aligned_cols=160 Identities=11% Similarity=-0.031 Sum_probs=115.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHhcCcccHH-------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHH
Q 025612 68 HAMKLAKSSSKLEEGFQSRICRLLKADLL-------DTLTELRRQNELDLALKVFNFVRKEVWYKPD----LSLYSDMIL 136 (250)
Q Consensus 68 ~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-------~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~----~~~y~~li~ 136 (250)
..+...|++++|...+++.....-..+.. .+-..+...|++++|...+++..+...-..+ ..+++.+-.
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34456799999999999987643222211 2445677889999999999986531111122 234667778
Q ss_pred HHHcCCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CC--CHHHHHHHH
Q 025612 137 MLGKNKQIAMAEELFCELKKE----GLD--P-DTRVYTEMIGVYLQVGMIDKAMETYETMKASGC--TP--HKLTFTILI 205 (250)
Q Consensus 137 ~~~~~~~~~~A~~~~~~m~~~----g~~--p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p--~~~ty~~li 205 (250)
.|...|++++|...+++.... +-. | ....+..+-..|...|++++|...+++.....- .+ ...+|..+-
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 899999999999999886542 222 3 245677788889999999999999998765321 11 346788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 025612 206 RNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 206 ~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
..+...|++++|.+.+++..+.
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~ 203 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENL 203 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999988654
No 118
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.06 E-value=0.00027 Score=49.57 Aligned_cols=98 Identities=9% Similarity=-0.048 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 025612 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206 (250)
Q Consensus 127 ~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~ 206 (250)
+...|..+-..+...|++++|...|++..... +.+...|..+...|...|++++|...|++..+.. .-+...|..+-.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 45666666666777777777777776655431 2245666666666777777777777776665532 124556666667
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 025612 207 NLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 207 ~~~~~g~~~~a~~~~~~m~~ 226 (250)
+|...|+++.|.+.|+...+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 77777777777777766554
No 119
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.06 E-value=0.00024 Score=59.41 Aligned_cols=159 Identities=13% Similarity=0.023 Sum_probs=114.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHh----cCcccHH----HHHHHHHHcCCHHHHHHHHHHHHH---hCCCCCCHHHHHH
Q 025612 65 QAVHAMKLAKSSSKLEEGFQSRICR----LLKADLL----DTLTELRRQNELDLALKVFNFVRK---EVWYKPDLSLYSD 133 (250)
Q Consensus 65 ~ll~~~~~~~~~~~a~~l~~~m~~~----~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~---~~g~~~~~~~y~~ 133 (250)
.+-..+...|++++|...+++..+. +..+... .+-..+...|++++|.+.|.+..+ ..+-+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 4566677889999999999987643 2222211 366677889999999999998753 1122333778889
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 025612 134 MILMLGKNKQIAMAEELFCELKKE----GLDPDTRVYTEMIGVYLQVGM---IDKAMETYETMKASGCTPH-KLTFTILI 205 (250)
Q Consensus 134 li~~~~~~~~~~~A~~~~~~m~~~----g~~p~~~ty~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p~-~~ty~~li 205 (250)
+-..|.+.|++++|...+++..+. +-+.....++.+-..|...|+ +.+|..+++. .+..|+ ...+..+-
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHH
Confidence 999999999999999999987653 122224456666667777788 7777777765 333333 34667888
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 025612 206 RNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 206 ~~~~~~g~~~~a~~~~~~m~~ 226 (250)
..|...|++++|.+.|+...+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 120
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.06 E-value=0.00011 Score=54.31 Aligned_cols=122 Identities=7% Similarity=0.022 Sum_probs=94.6
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCh--
Q 025612 103 RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGV-YLQVGMI-- 179 (250)
Q Consensus 103 ~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~-~~~~g~~-- 179 (250)
...|++++|...|....+.. +.+...|..+-..|...|++++|...|++..+.. +.+...|..+... |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 46788889999998876532 3467889999999999999999999999887642 2366777788778 7788998
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 025612 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 180 ~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g 228 (250)
++|...|++..+.. .-+...+..+-..|...|++++|.+.++...+..
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999987753 2256788888899999999999999999987654
No 121
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.05 E-value=3.3e-05 Score=58.53 Aligned_cols=129 Identities=12% Similarity=0.035 Sum_probs=87.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPD--------------LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~--------------~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 163 (250)
+-..+.+.|++++|...|.+..+...-.|+ ...|..+-.+|.+.|++++|...+++.... -+.+.
T Consensus 44 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~ 122 (198)
T 2fbn_A 44 EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI-DKNNV 122 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CcccH
Confidence 445566778888888888877642211221 367888888999999999999999987764 23467
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhccC
Q 025612 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTP-HKLTFTILIRNLENAGEEELVA-AVRRDCIQYVE 229 (250)
Q Consensus 164 ~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~-~~~~~m~~~g~ 229 (250)
..|..+-.+|...|++++|...|++..+. .| +...+..+-.++...++.+++. ..+..|...|.
T Consensus 123 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~ 188 (198)
T 2fbn_A 123 KALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGP 188 (198)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 78888889999999999999999988764 34 5667777777777777777766 55555554443
No 122
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.05 E-value=0.0006 Score=57.62 Aligned_cols=164 Identities=6% Similarity=-0.093 Sum_probs=118.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCcc-c------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 025612 63 AIQAVHAMKLAKSSSKLEEGFQSRICRLLKA-D------------------LLDTLTELRRQNELDLALKVFNFVRKEVW 123 (250)
Q Consensus 63 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~-~------------------~~~ll~~~~~~~~~~~a~~~~~~m~~~~g 123 (250)
-+.-.+.+.+.|++++|.+.|....+..-.. + ...+...|.+.|++++|.+.+....+..+
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3444677888999999999999987532211 0 12588899999999999999998764322
Q ss_pred CCCCHH----HHHHHHHHHHcCCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHC--
Q 025612 124 YKPDLS----LYSDMILMLGKNKQIAMAEELFCELKK----EGLDPD-TRVYTEMIGVYLQVGMIDKAMETYETMKAS-- 192 (250)
Q Consensus 124 ~~~~~~----~y~~li~~~~~~~~~~~A~~~~~~m~~----~g~~p~-~~ty~~li~~~~~~g~~~~a~~~~~~m~~~-- 192 (250)
-.++.. +.+.+=..+...|+.+.|.+++.+... .+..+. ..++..+...|...|++++|..++++....
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 222322 223333344467889999999887643 333333 567888999999999999999999987543
Q ss_pred C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 193 G--CTP-HKLTFTILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 193 g--~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
+ -+| ....|..+.+.|...|++++|..+++....
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 2 122 236799999999999999999999988654
No 123
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.04 E-value=0.00022 Score=60.17 Aligned_cols=129 Identities=6% Similarity=-0.044 Sum_probs=108.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ-IAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 176 (250)
+-..+.+.|++++|...|+...+. . +-+...|+.+-..|.+.|+ +++|+..|++..+.. +-+...|+.+-..|...
T Consensus 103 lg~~~~~~g~~~~Al~~~~~al~l-~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~ 179 (382)
T 2h6f_A 103 FRAVLQRDERSERAFKLTRDAIEL-N-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWL 179 (382)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHh-C-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHc
Confidence 445667889999999999998753 2 2358889999999999997 999999999988742 22678899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 025612 177 GMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEF 230 (250)
Q Consensus 177 g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 230 (250)
|++++|+..|++..+.. .-+...|..+-.++.+.|++++|.+.++.+.+..-.
T Consensus 180 g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~ 232 (382)
T 2h6f_A 180 RDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR 232 (382)
T ss_dssp TCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred cCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 99999999999998753 226788999999999999999999999999876554
No 124
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.04 E-value=0.00014 Score=52.98 Aligned_cols=98 Identities=11% Similarity=-0.078 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 025612 128 LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP-HKLTFTILIR 206 (250)
Q Consensus 128 ~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~ 206 (250)
...+..+-..|.+.|++++|...|++..... +-+...|..+-.+|...|++++|...|++..+. .| +...|..+-.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHHH
Confidence 5567777888999999999999999987742 336888999999999999999999999998874 34 4678889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcc
Q 025612 207 NLENAGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 207 ~~~~~g~~~~a~~~~~~m~~~g 228 (250)
+|.+.|++++|.+.|+...+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999998765
No 125
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.01 E-value=0.00032 Score=67.63 Aligned_cols=141 Identities=16% Similarity=0.164 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 025612 62 EAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141 (250)
Q Consensus 62 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~ 141 (250)
.+..+-+++-..|++++|...|.+. +..-....++.+|.+.|++++|.+.+...++ .. ++....+.+..+|++.
T Consensus 1107 vWsqLAKAql~~G~~kEAIdsYiKA---dD~say~eVa~~~~~lGkyEEAIeyL~mArk-~~--~e~~Idt~LafaYAKl 1180 (1630)
T 1xi4_A 1107 VWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARK-KA--RESYVETELIFALAKT 1180 (1630)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhc---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hc--ccccccHHHHHHHHhh
Confidence 3445566666777777777776442 2222233577777777777777777776543 22 2323333466667776
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 025612 142 KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVR 221 (250)
Q Consensus 142 ~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~ 221 (250)
+++++..... + .|+...|..+-..|...|++++|..+|... ..|..+...|.+.|+++.|.+.+
T Consensus 1181 ~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaa 1244 (1630)
T 1xi4_A 1181 NRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGA 1244 (1630)
T ss_pred cCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHH
Confidence 6666433332 1 235555666666666777777777777663 36677777777777777776666
Q ss_pred HHH
Q 025612 222 RDC 224 (250)
Q Consensus 222 ~~m 224 (250)
++.
T Consensus 1245 rKA 1247 (1630)
T 1xi4_A 1245 RKA 1247 (1630)
T ss_pred HHh
Confidence 554
No 126
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.01 E-value=0.00045 Score=54.42 Aligned_cols=129 Identities=17% Similarity=0.072 Sum_probs=99.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHH
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPD-LSLYSDMILMLGKNKQIAMAEELFCELKKEGL-DPD-TRVYTEMIGVY 173 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~-~~ty~~li~~~ 173 (250)
..-..+.+.|++++|...|+.+.+...-.|. ...+..+-.+|.+.|++++|...|++..+..- .|. ...+..+-.+|
T Consensus 20 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~ 99 (261)
T 3qky_A 20 ERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCY 99 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHH
Confidence 4566778999999999999999753211111 67788888999999999999999999877421 122 45677777888
Q ss_pred Hh--------cCChHHHHHHHHHHHHCCCCCCH-HHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 025612 174 LQ--------VGMIDKAMETYETMKASGCTPHK-LTF-----------------TILIRNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 174 ~~--------~g~~~~a~~~~~~m~~~g~~p~~-~ty-----------------~~li~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
.. .|++++|...|++..+.. |+. ... ..+-..|.+.|+++.|.+.|+...+.
T Consensus 100 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 177 (261)
T 3qky_A 100 YKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDA 177 (261)
T ss_dssp HHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88 999999999999987742 432 222 45677889999999999999998865
No 127
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.00 E-value=0.00018 Score=49.61 Aligned_cols=106 Identities=12% Similarity=0.154 Sum_probs=77.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC--CCCC----HHHHHHHHH
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG--LDPD----TRVYTEMIG 171 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g--~~p~----~~ty~~li~ 171 (250)
+-..+...|++++|...|....+.. +.+...|..+...|...|++++|...|++..... ..++ ..+|..+..
T Consensus 10 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 10 LGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 4556778888888888888876532 3467778888888888899999988888876542 1222 677888888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 025612 172 VYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN 207 (250)
Q Consensus 172 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~ 207 (250)
.|.+.|++++|.+.|+...+. .|+......+-..
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 888999999999999888774 3565555444433
No 128
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.00 E-value=0.00019 Score=52.43 Aligned_cols=91 Identities=11% Similarity=-0.001 Sum_probs=62.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 177 (250)
+-..+.+.|++++|...|+...+.. +-+...|..+-.+|.+.|++++|...|++..+.. +-+...|..+-..|...|
T Consensus 17 ~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g 93 (164)
T 3sz7_A 17 EGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARFDMA 93 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 5556667777777777777766421 2256677777777777777777777777766542 224666777777777777
Q ss_pred ChHHHHHHHHHHHH
Q 025612 178 MIDKAMETYETMKA 191 (250)
Q Consensus 178 ~~~~a~~~~~~m~~ 191 (250)
++++|...|++..+
T Consensus 94 ~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 94 DYKGAKEAYEKGIE 107 (164)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777777655
No 129
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.00 E-value=0.00063 Score=54.74 Aligned_cols=131 Identities=13% Similarity=0.058 Sum_probs=98.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC---CCCC--HHHHH
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPD----LSLYSDMILMLGKNKQIAMAEELFCELKKEG---LDPD--TRVYT 167 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~----~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g---~~p~--~~ty~ 167 (250)
..+..+...|++++|.+.+....+.....++ ...+..+...|...|++++|...|++..+.. ..+. ..+|+
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 4677888999999999999987653221111 1234456667788899999999999876532 1222 45899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH----CCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 025612 168 EMIGVYLQVGMIDKAMETYETMKA----SGCTP--HKLTFTILIRNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 168 ~li~~~~~~g~~~~a~~~~~~m~~----~g~~p--~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
.+-..|...|++++|...|++..+ .+-.+ ...+|..+-..|.+.|++++|.+.+++..+.
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999999998762 22122 1258899999999999999999999987643
No 130
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.00 E-value=0.00034 Score=50.50 Aligned_cols=93 Identities=13% Similarity=0.001 Sum_probs=41.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 025612 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210 (250)
Q Consensus 131 y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~ 210 (250)
+..+-..+.+.|++++|...|++..... +.+...|..+-.+|...|++++|...|++..... .-+...|..+-.+|..
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 3334444444555555555554443321 1134444444444445555555555554444321 1123444444444555
Q ss_pred cCCHHHHHHHHHHHH
Q 025612 211 AGEEELVAAVRRDCI 225 (250)
Q Consensus 211 ~g~~~~a~~~~~~m~ 225 (250)
.|++++|.+.|+...
T Consensus 102 ~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 102 XGELAEAESGLFLAQ 116 (148)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 555555555554443
No 131
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.96 E-value=0.00058 Score=60.39 Aligned_cols=129 Identities=8% Similarity=-0.068 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 025612 61 SEAIQAVHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILML 138 (250)
Q Consensus 61 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~ 138 (250)
.....+...+...|++++|...+++..+..-. +... .+-..+...|++++|.+.|++..+. . +.+...|..+-..|
T Consensus 24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~-p~~~~~~~~la~~~ 101 (568)
T 2vsy_A 24 VAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA-A-PEHPGIALWLGHAL 101 (568)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CCCHHHHHHHHHHH
Confidence 34455677788889999999999998764321 2222 5777888999999999999998753 2 33578999999999
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHC
Q 025612 139 GKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV---GMIDKAMETYETMKAS 192 (250)
Q Consensus 139 ~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~---g~~~~a~~~~~~m~~~ 192 (250)
.+.|++++|.+.|++..+.. +-+...+..+...|... |+.++|.+.+++..+.
T Consensus 102 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 102 EDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99999999999999987642 23578889999999999 9999999999998765
No 132
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.95 E-value=6.3e-05 Score=54.56 Aligned_cols=118 Identities=12% Similarity=0.039 Sum_probs=92.5
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 025612 104 RQNELDLALKVFNFVRKEVWYKPD-LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKA 182 (250)
Q Consensus 104 ~~~~~~~a~~~~~~m~~~~g~~~~-~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a 182 (250)
..|++++|...+..... ..|+ ...+-.+-..|.+.|++++|.+.|++..+.. +-+..+|..+-..|.+.|++++|
T Consensus 9 ~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 9 SKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 45678888888887642 2232 3445667888999999999999999987742 23678899999999999999999
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhc
Q 025612 183 METYETMKASGCTP-HKLTFTILIRNLENAGEEELVAAV-RRDCIQY 227 (250)
Q Consensus 183 ~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~-~~~m~~~ 227 (250)
...|++..+. .| +...|..+-..|.+.|+++++.+. ++...+.
T Consensus 85 ~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 85 VECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 9999998874 45 568899999999999998776654 5665553
No 133
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.95 E-value=0.00028 Score=50.29 Aligned_cols=88 Identities=14% Similarity=0.014 Sum_probs=38.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 025612 100 TELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179 (250)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 179 (250)
..+.+.|++++|...|+...+.. +.+...|..+-.+|.+.|++++|...|+...... +-+...|..+-.+|...|++
T Consensus 26 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 26 FNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGDL 102 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 33444455555555555443211 1234444444444445555555555554443321 11233344444444445555
Q ss_pred HHHHHHHHHHH
Q 025612 180 DKAMETYETMK 190 (250)
Q Consensus 180 ~~a~~~~~~m~ 190 (250)
++|...|+...
T Consensus 103 ~~A~~~~~~al 113 (142)
T 2xcb_A 103 DGAESGFYSAR 113 (142)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555444443
No 134
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.94 E-value=0.0012 Score=53.23 Aligned_cols=127 Identities=13% Similarity=0.041 Sum_probs=101.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHh
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI-GVYLQ 175 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li-~~~~~ 175 (250)
.+-..+...|++++|...|+...+.. +-+...+..+-..|.+.|++++|...|++.... .|+........ ..+.+
T Consensus 122 ~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~ 197 (287)
T 3qou_A 122 QQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLX 197 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHh
Confidence 45667789999999999999987532 235788999999999999999999999987664 46655433333 34667
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 025612 176 VGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 176 ~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g 228 (250)
.++.++|...+++..... ..+...+..+-..+...|++++|.+.+....+..
T Consensus 198 ~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 198 QAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD 249 (287)
T ss_dssp HHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 888889999998887753 2367889999999999999999999999998754
No 135
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.93 E-value=0.00017 Score=51.44 Aligned_cols=129 Identities=9% Similarity=-0.103 Sum_probs=80.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCC-CHHHHHH
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPD----LSLYSDMILMLGKNKQIAMAEELFCELKKE----GLDP-DTRVYTE 168 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~----~~~y~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~ty~~ 168 (250)
+-..+...|++++|...+.+..+...-.++ ..++..+-..|...|++++|.+.|++.... +-.+ ....+..
T Consensus 15 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 94 (164)
T 3ro3_A 15 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 94 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 334455666666666666664321100111 246677777777888888888877775432 1111 1445667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 169 MIGVYLQVGMIDKAMETYETMKAS----GCTP-HKLTFTILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 169 li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
+-..|...|++++|.+.+++..+. +..+ ...++..+-..+...|++++|.+.+++..+
T Consensus 95 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 95 LGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 777778888888888888776432 2111 135677777888888888888888887654
No 136
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.91 E-value=0.0008 Score=46.56 Aligned_cols=91 Identities=18% Similarity=0.116 Sum_probs=72.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 177 (250)
+-..+.+.|++++|...|+...+.. +.+...|..+-.+|.+.|++++|...|++..+.. +-+...|..+-..|...|
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 10 EGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVK 86 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHh
Confidence 3456778899999999998876532 3357888888899999999999999998877642 235778888888999999
Q ss_pred ChHHHHHHHHHHHH
Q 025612 178 MIDKAMETYETMKA 191 (250)
Q Consensus 178 ~~~~a~~~~~~m~~ 191 (250)
++++|...|++..+
T Consensus 87 ~~~~A~~~~~~al~ 100 (126)
T 3upv_A 87 EYASALETLDAART 100 (126)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988766
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.90 E-value=0.00016 Score=54.33 Aligned_cols=123 Identities=11% Similarity=-0.019 Sum_probs=91.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhc
Q 025612 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKK----EGLDP-DTRVYTEMIGVYLQV 176 (250)
Q Consensus 102 ~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~----~g~~p-~~~ty~~li~~~~~~ 176 (250)
....|++++|.++++.+.. ........++.+-..|...|++++|...|++... .|..| ...+++.+-..|...
T Consensus 2 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA--HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA 79 (203)
T ss_dssp -----CHHHHHHHHHHHHT--STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ccccccHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence 3568999999997766642 2223578889999999999999999999988755 22222 346788888899999
Q ss_pred CChHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 177 GMIDKAMETYETMKAS----GCTP--HKLTFTILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 177 g~~~~a~~~~~~m~~~----g~~p--~~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
|++++|.+.+++..+. |-.| ....+..+-..+...|++++|.+.+++..+
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999886543 3122 235688888899999999999999988764
No 138
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.89 E-value=0.00023 Score=57.85 Aligned_cols=128 Identities=11% Similarity=-0.008 Sum_probs=95.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCC-CHHHHHH
Q 025612 98 TLTELRRQNELDLALKVFNFVRKE---VWYKP-DLSLYSDMILMLGKNKQIAMAEELFCELKKE----GLDP-DTRVYTE 168 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~---~g~~~-~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~ty~~ 168 (250)
....|...|++++|...|.+..+- .+-.. -..+|+.+-..|.+.|++++|...|++..+. |-.. -..+|+.
T Consensus 42 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 121 (307)
T 2ifu_A 42 AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDR 121 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345677889999999999886431 11111 1568899999999999999999999875432 2111 1467888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 169 MIGVYLQVGMIDKAMETYETMKAS----GCTP-HKLTFTILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 169 li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
+-..|.. |++++|+..|++..+. |-.+ ...++..+-..|.+.|++++|.+.|++..+
T Consensus 122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888 9999999999886542 2111 146788899999999999999999998875
No 139
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.89 E-value=0.0013 Score=63.56 Aligned_cols=148 Identities=13% Similarity=0.119 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 025612 61 SEAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139 (250)
Q Consensus 61 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~ 139 (250)
..+..++..+.+.|++++|.+.+....+..-.|... .+..+|++.+++++...+. + .++...|..+-..|-
T Consensus 1135 say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~----~~n~ad~~~iGd~le 1206 (1630)
T 1xi4_A 1135 SSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N----GPNNAHIQQVGDRCY 1206 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h----CCCHHHHHHHHHHHH
Confidence 456678999999999999999998766544222222 4788888888887544332 2 345566666777777
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------------------------CCC
Q 025612 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS------------------------GCT 195 (250)
Q Consensus 140 ~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~------------------------g~~ 195 (250)
..|++++|..+|... ..|..+..+|++.|++++|.+.+++-... ++.
T Consensus 1207 ~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Ii 1277 (1630)
T 1xi4_A 1207 DEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV 1277 (1630)
T ss_pred hcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 888888888888774 37788888888888888887777554211 122
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025612 196 PHKLTFTILIRNLENAGEEELVAAVRRDCI 225 (250)
Q Consensus 196 p~~~ty~~li~~~~~~g~~~~a~~~~~~m~ 225 (250)
-+...+..++..|.+.|.+++|..+++.-.
T Consensus 1278 v~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1278 VHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 344556677777888888888888775544
No 140
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.87 E-value=0.00078 Score=45.27 Aligned_cols=92 Identities=17% Similarity=0.082 Sum_probs=68.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 177 (250)
+...+...|++++|...|+...+.. +.+...+..+...|.+.|++++|...+++..+.. +.+...|..+...|...|
T Consensus 10 ~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 10 KGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHh
Confidence 4556677888888888888876421 2356777778888888888888888888776642 235677778888888888
Q ss_pred ChHHHHHHHHHHHHC
Q 025612 178 MIDKAMETYETMKAS 192 (250)
Q Consensus 178 ~~~~a~~~~~~m~~~ 192 (250)
++++|.+.|++..+.
T Consensus 87 ~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 87 RFEEAKRTYEEGLKH 101 (118)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHc
Confidence 888888888887764
No 141
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.87 E-value=0.001 Score=48.46 Aligned_cols=97 Identities=11% Similarity=0.005 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 025612 128 LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN 207 (250)
Q Consensus 128 ~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~ 207 (250)
...|..+-..|.+.|++++|...|++..+.. +-+...|..+-..|.+.|++++|...|++..+.. .-+...|..+-.+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445555555555666666666665554421 1144555555555556666666666665554432 1134555555555
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 025612 208 LENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 208 ~~~~g~~~~a~~~~~~m~~ 226 (250)
|...|++++|.+.|+...+
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 5566666666665555543
No 142
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.86 E-value=0.00042 Score=62.96 Aligned_cols=147 Identities=12% Similarity=-0.008 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 025612 61 SEAIQAVHAMKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILML 138 (250)
Q Consensus 61 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~ 138 (250)
.....+...+...|++++|...|++..+..-. +... .+-.++...|++++|...|++..+.. +-+...|..+-.+|
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~ 511 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF--PGELAPKLALAATA 511 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHH
Confidence 44445567788889999999999998764321 2222 46667889999999999999987532 22577889999999
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 025612 139 GKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH-KLTFTILIRNLENAGE 213 (250)
Q Consensus 139 ~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~ 213 (250)
.+.|++++ .+.|++..+.. +-+...|..+-..|.+.|++++|.+.|++..+. .|+ ...|..+..++...++
T Consensus 512 ~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 512 ELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 99999999 99999987642 235778999999999999999999999988764 465 4667777777766554
No 143
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.86 E-value=0.00096 Score=60.50 Aligned_cols=163 Identities=16% Similarity=0.136 Sum_probs=119.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcC---------ccc-----------H----HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 025612 66 AVHAMKLAKSSSKLEEGFQSRICRLL---------KAD-----------L----LDTLTELRRQNELDLALKVFNFVRKE 121 (250)
Q Consensus 66 ll~~~~~~~~~~~a~~l~~~m~~~~~---------~~~-----------~----~~ll~~~~~~~~~~~a~~~~~~m~~~ 121 (250)
.+...-+.|++++|.++|+.+..... .|+ . ...++..-+.|.++.|..+|....+.
T Consensus 384 ~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 384 LSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45556678999999999999876421 121 1 14666677889999999999999764
Q ss_pred -CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CH
Q 025612 122 -VWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP--HK 198 (250)
Q Consensus 122 -~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~ 198 (250)
....+......+.|...+ .++.+.|.++|+...+. ++-+...|...+......|+.+.|..+|++.....-.+ ..
T Consensus 464 ~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~ 541 (679)
T 4e6h_A 464 KKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLK 541 (679)
T ss_dssp GGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHH
T ss_pred cCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 223334444444444322 35699999999998775 34466677888888888999999999999988764222 34
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 025612 199 LTFTILIRNLENAGEEELVAAVRRDCIQYVEF 230 (250)
Q Consensus 199 ~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 230 (250)
..|...++--.+.|+.+.+.++.+.+.+.--.
T Consensus 542 ~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 542 MIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 67888888888999999999999999876543
No 144
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.86 E-value=0.00047 Score=45.97 Aligned_cols=92 Identities=8% Similarity=-0.060 Sum_probs=68.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHh
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP--DTRVYTEMIGVYLQ 175 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p--~~~ty~~li~~~~~ 175 (250)
+-..+.+.|++++|...|+...+.. +.+...|..+-..|...|++++|...|++..+.. +. +...|..+...|.+
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~ 88 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRY 88 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHH
Confidence 4556667788888888888876421 2356777888888888888888888888877642 22 47778888888888
Q ss_pred c-CChHHHHHHHHHHHHC
Q 025612 176 V-GMIDKAMETYETMKAS 192 (250)
Q Consensus 176 ~-g~~~~a~~~~~~m~~~ 192 (250)
. |++++|.+.++.....
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 89 IEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp CSSCSHHHHHHHHHHGGG
T ss_pred HhCCHHHHHHHHHHHhhc
Confidence 8 8888888888887764
No 145
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.86 E-value=0.00029 Score=61.45 Aligned_cols=127 Identities=9% Similarity=-0.061 Sum_probs=96.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHh---CCC---CCC-HHHHH
Q 025612 101 ELRRQNELDLALKVFNFVRKE--VWYKP----DLSLYSDMILMLGKNKQIAMAEELFCELKK---EGL---DPD-TRVYT 167 (250)
Q Consensus 101 ~~~~~~~~~~a~~~~~~m~~~--~g~~~----~~~~y~~li~~~~~~~~~~~A~~~~~~m~~---~g~---~p~-~~ty~ 167 (250)
.+-..|++++|..++++..+. .-+.| ...++|.|...|...|++++|..++++... .-+ .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455789999999999886432 22223 267899999999999999999999988643 112 233 57799
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH-----CCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 025612 168 EMIGVYLQVGMIDKAMETYETMKA-----SGC-TPHK-LTFTILIRNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 168 ~li~~~~~~g~~~~a~~~~~~m~~-----~g~-~p~~-~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
.|-..|...|++++|+.++++..+ .|- .|+. .+.+.+-.++...+.+++|+.+++.+++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987643 231 2333 45666777888899999999999999864
No 146
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.83 E-value=0.00058 Score=47.84 Aligned_cols=99 Identities=7% Similarity=0.051 Sum_probs=56.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHH
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE--GLDPD----TRVYTEMIG 171 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~----~~ty~~li~ 171 (250)
+=..+.+.|++++|.+.|++..+. . +-+...|+.+-.+|.+.|++++|++.|++..+. ...++ ..+|..+-.
T Consensus 14 lG~~~~~~~~~~~A~~~y~~Al~~-~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~ 91 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVHYDKAIEL-D-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGN 91 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-C-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 334566667777777777766542 1 224566666666777777777777766665432 11111 134555555
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 025612 172 VYLQVGMIDKAMETYETMKASGCTPHKLT 200 (250)
Q Consensus 172 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 200 (250)
.|...|++++|++.|++-... .||..+
T Consensus 92 ~~~~~~~~~~A~~~~~kal~~--~~~~~~ 118 (127)
T 4gcn_A 92 AFQKQNDLSLAVQWFHRSLSE--FRDPEL 118 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhh--CcCHHH
Confidence 666666666666666665442 355443
No 147
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.83 E-value=0.00081 Score=47.83 Aligned_cols=128 Identities=11% Similarity=-0.065 Sum_probs=93.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcCc-cc---H---H-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC----HHHH
Q 025612 64 IQAVHAMKLAKSSSKLEEGFQSRICRLLK-AD---L---L-DTLTELRRQNELDLALKVFNFVRKEVWYKPD----LSLY 131 (250)
Q Consensus 64 ~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~---~---~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~----~~~y 131 (250)
..+-..+...|++++|...+++.....-. ++ . . .+-..+...|++++|.+.++...+...-..+ ...+
T Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 92 (164)
T 3ro3_A 13 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 92 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 34566677889999999999997643211 11 1 1 4777788999999999999986532111112 5567
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 025612 132 SDMILMLGKNKQIAMAEELFCELKKE----GLDP-DTRVYTEMIGVYLQVGMIDKAMETYETMKA 191 (250)
Q Consensus 132 ~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 191 (250)
..+-..|...|++++|.+.+++..+. +-.+ ...++..+-..|...|++++|.+.+++..+
T Consensus 93 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 93 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 88888999999999999999886542 2111 245678888899999999999999988654
No 148
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.83 E-value=0.00095 Score=47.05 Aligned_cols=62 Identities=13% Similarity=0.050 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 025612 129 SLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA 191 (250)
Q Consensus 129 ~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 191 (250)
..|..+-..|...|++++|...|++..+.. +.+...|..+...|...|++++|...|++..+
T Consensus 66 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 66 VLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444445555555555555555443321 11344444555555555555555555555444
No 149
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.83 E-value=0.00085 Score=46.34 Aligned_cols=91 Identities=12% Similarity=-0.020 Sum_probs=46.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHH
Q 025612 99 LTELRRQNELDLALKVFNFVRKEVWYKPD-LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD----TRVYTEMIGVY 173 (250)
Q Consensus 99 l~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~----~~ty~~li~~~ 173 (250)
-..+.+.|++++|...|+...+...-.+. ...+..+-.+|.+.|++++|...|++.... .|+ ...+..+...|
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHH
Confidence 34455566666666666665432111110 134445555555666666666666655443 122 34455555555
Q ss_pred HhcCChHHHHHHHHHHHH
Q 025612 174 LQVGMIDKAMETYETMKA 191 (250)
Q Consensus 174 ~~~g~~~~a~~~~~~m~~ 191 (250)
.+.|++++|...|+...+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 556666666666655554
No 150
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.82 E-value=0.00043 Score=48.52 Aligned_cols=104 Identities=11% Similarity=0.060 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC----HHHH
Q 025612 128 LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS--GCTPH----KLTF 201 (250)
Q Consensus 128 ~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~----~~ty 201 (250)
...+..+=..|.+.|++++|++.|++..+.. +-+...|+.+-.+|.+.|++++|++.|++..+. ...++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4567777788999999999999999987642 235788999999999999999999999987653 11222 2467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCch
Q 025612 202 TILIRNLENAGEEELVAAVRRDCIQYVEFPE 232 (250)
Q Consensus 202 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd 232 (250)
..+-.++...|++++|.+.|+...+..-.|+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~ 117 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRDPE 117 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCHH
Confidence 7777888999999999999998776544444
No 151
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.82 E-value=0.0014 Score=47.14 Aligned_cols=93 Identities=12% Similarity=-0.025 Sum_probs=75.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 176 (250)
.+-..+.+.|++++|...|+...+.. +.+...|..+-.+|...|++++|...|++..... +-+...|..+-.+|...
T Consensus 26 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 26 SLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 35567788999999999999987532 3367888888899999999999999999887642 23567788888999999
Q ss_pred CChHHHHHHHHHHHHC
Q 025612 177 GMIDKAMETYETMKAS 192 (250)
Q Consensus 177 g~~~~a~~~~~~m~~~ 192 (250)
|++++|...|+...+.
T Consensus 103 g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 103 GELAEAESGLFLAQEL 118 (148)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987663
No 152
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.82 E-value=0.00064 Score=52.48 Aligned_cols=127 Identities=12% Similarity=0.089 Sum_probs=92.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHH
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPD-LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT----RVYTEMIG 171 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~ty~~li~ 171 (250)
.+-..+.+.|++++|...|+.+.+...-.|. ...+..+..+|.+.|++++|...|++..+. .|+. ..+-.+-.
T Consensus 9 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~~g~ 86 (225)
T 2yhc_A 9 ATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYMRGL 86 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHHHHH
Confidence 3456788999999999999999764222222 457788889999999999999999998764 2332 23333334
Q ss_pred HHHh------------------cCChHHHHHHHHHHHHCCCCCCH-HHH-----------------HHHHHHHHhcCCHH
Q 025612 172 VYLQ------------------VGMIDKAMETYETMKASGCTPHK-LTF-----------------TILIRNLENAGEEE 215 (250)
Q Consensus 172 ~~~~------------------~g~~~~a~~~~~~m~~~g~~p~~-~ty-----------------~~li~~~~~~g~~~ 215 (250)
+|.+ .|+.++|...|++..+. -|+. ..+ ..+-..|.+.|+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~ 164 (225)
T 2yhc_A 87 TNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWV 164 (225)
T ss_dssp HHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 4433 57899999999999875 2433 121 23456788999999
Q ss_pred HHHHHHHHHHhc
Q 025612 216 LVAAVRRDCIQY 227 (250)
Q Consensus 216 ~a~~~~~~m~~~ 227 (250)
.|...|+.+.+.
T Consensus 165 ~A~~~~~~~l~~ 176 (225)
T 2yhc_A 165 AVVNRVEGMLRD 176 (225)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998865
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.81 E-value=0.00085 Score=47.74 Aligned_cols=98 Identities=10% Similarity=0.003 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 025612 128 LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN 207 (250)
Q Consensus 128 ~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~ 207 (250)
...+..+-..+.+.|++++|...|++..... +-+...|..+-..|.+.|++++|...|+...... .-+...|..+-.+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 3445566677888899999999998876642 2367778888888889999999999998887653 2255677788888
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 025612 208 LENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 208 ~~~~g~~~~a~~~~~~m~~~ 227 (250)
|...|++++|.+.|+...+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 88999999999998887654
No 154
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.79 E-value=0.00011 Score=50.71 Aligned_cols=85 Identities=12% Similarity=-0.030 Sum_probs=44.2
Q ss_pred cCCHHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 025612 105 QNELDLALKVFNFVRKEVW--YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKA 182 (250)
Q Consensus 105 ~~~~~~a~~~~~~m~~~~g--~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a 182 (250)
.|++++|...|++..+ .+ -+-+...|..+-..|.+.|++++|...|++..+.. +-+...|..+..+|.+.|++++|
T Consensus 3 ~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 4556666666666543 21 01124455555566666666666666666655431 12345555556666666666666
Q ss_pred HHHHHHHHH
Q 025612 183 METYETMKA 191 (250)
Q Consensus 183 ~~~~~~m~~ 191 (250)
...|++...
T Consensus 81 ~~~~~~al~ 89 (117)
T 3k9i_A 81 VELLLKIIA 89 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665544
No 155
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.78 E-value=0.0017 Score=53.59 Aligned_cols=125 Identities=7% Similarity=-0.116 Sum_probs=98.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCcc----------------cHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 025612 63 AIQAVHAMKLAKSSSKLEEGFQSRICRLLKA----------------DLL-DTLTELRRQNELDLALKVFNFVRKEVWYK 125 (250)
Q Consensus 63 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~----------------~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~ 125 (250)
...+-..+.+.|++++|...|++..+..-.. ... .+-.++.+.|++++|...|+...+. . +
T Consensus 150 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-~-p 227 (336)
T 1p5q_A 150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL-D-S 227 (336)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-T
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-C
Confidence 3345667778899999999999987644322 111 4777888999999999999998753 2 3
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH-HHHHHHHH
Q 025612 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKA-METYETMK 190 (250)
Q Consensus 126 ~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a-~~~~~~m~ 190 (250)
.+...|..+-.+|...|++++|...|++..+.. +-+...+..+...+.+.|+.+++ ..+|+.|.
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999987742 23577888899999999999988 45666664
No 156
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.77 E-value=0.0011 Score=45.81 Aligned_cols=89 Identities=12% Similarity=0.037 Sum_probs=49.8
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHH
Q 025612 135 ILMLGKNKQIAMAEELFCELKKEGLDPDT----RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH----KLTFTILIR 206 (250)
Q Consensus 135 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~ty~~li~ 206 (250)
-..+.+.|++++|...|++..+.. |+. ..+..+-..|.+.|++++|...|+...+.. |+ ...+..+-.
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHH
Confidence 344555666666666666655431 221 345555556666666666666666655432 22 344555556
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 025612 207 NLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 207 ~~~~~g~~~~a~~~~~~m~~~ 227 (250)
++.+.|++++|.+.|+...+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666665543
No 157
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.77 E-value=0.00064 Score=50.27 Aligned_cols=127 Identities=18% Similarity=0.153 Sum_probs=95.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHh
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGV-YLQ 175 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~-~~~ 175 (250)
..-..+.+.|++++|...|+...+.. +-+...+..+-..|.+.|++++|...|+..... .|+...+..+... +..
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 45567889999999999999865421 235788999999999999999999999987654 3444433332211 223
Q ss_pred cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 025612 176 VGMIDKAMETYETMKASGCTP-HKLTFTILIRNLENAGEEELVAAVRRDCIQYVE 229 (250)
Q Consensus 176 ~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~ 229 (250)
.+...+|...|++..+. .| +...+..+-..+...|++++|.+.|+...+..-
T Consensus 87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 139 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNL 139 (176)
T ss_dssp HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc
Confidence 33344578888887764 45 578899999999999999999999999887653
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.74 E-value=0.0014 Score=45.68 Aligned_cols=92 Identities=11% Similarity=-0.035 Sum_probs=72.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 176 (250)
.+-..+.+.|++++|...|....+.. +.+...|..+-.+|...|++++|...|++..... +-+...|..+-..|...
T Consensus 14 ~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 90 (137)
T 3q49_B 14 EQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEM 90 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHH
Confidence 45567778888999998888876532 2357788888888999999999999998877642 23577888888889999
Q ss_pred CChHHHHHHHHHHHH
Q 025612 177 GMIDKAMETYETMKA 191 (250)
Q Consensus 177 g~~~~a~~~~~~m~~ 191 (250)
|++++|...|++..+
T Consensus 91 ~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 91 ESYDEAIANLQRAYS 105 (137)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999999988765
No 159
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.70 E-value=0.0014 Score=52.71 Aligned_cols=127 Identities=9% Similarity=-0.058 Sum_probs=87.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHH
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT----RVYTEMIGVY 173 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~ty~~li~~~ 173 (250)
+...+...|++++|.++|+.+.. . .|+....-.+-..+.+.+++++|+..|+..... |+. ..+..+-.++
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~-~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPV-A--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCC-T--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh-c--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCcccHHHHHHHHHHHH
Confidence 55667788888888888887742 2 344334455555778888888888888744332 222 3566667778
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 025612 174 LQVGMIDKAMETYETMKASGCTPH--KLTFTILIRNLENAGEEELVAAVRRDCIQYVEF 230 (250)
Q Consensus 174 ~~~g~~~~a~~~~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 230 (250)
...|++++|+..|++.......|. .......-.++.+.|+.++|..+|+++....-.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 888888888888888775444354 235556666777888888888888888765433
No 160
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.70 E-value=0.00072 Score=46.95 Aligned_cols=90 Identities=13% Similarity=0.063 Sum_probs=47.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP-DTRVYTEMIGVYLQV 176 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~ 176 (250)
+-..+.+.|++++|...|+...+.. +-+...|..+-.++...|++++|...|++..+. .| +...|..+...|.+.
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 3444555566666666665554321 124455555555555566666666665555442 22 344555555555555
Q ss_pred CChHHHHHHHHHHHH
Q 025612 177 GMIDKAMETYETMKA 191 (250)
Q Consensus 177 g~~~~a~~~~~~m~~ 191 (250)
|++++|...|++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666655555543
No 161
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.67 E-value=0.0042 Score=46.59 Aligned_cols=126 Identities=9% Similarity=-0.102 Sum_probs=88.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCC--------------HH
Q 025612 100 TELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG-LDPD--------------TR 164 (250)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~--------------~~ 164 (250)
......|.++++.+.|+.-.+. .......+..+-..+.+.|++++|...|++..... -.|+ ..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ----------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 3344555666666555533211 01135567778888999999999999999987641 1121 27
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 025612 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 165 ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g 228 (250)
.|..+-.+|.+.|++++|...++...+.. ..+...|..+-.+|...|+++.|.+.|+...+..
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 88889999999999999999999987752 3367889999999999999999999999987654
No 162
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.67 E-value=0.00038 Score=60.51 Aligned_cols=118 Identities=11% Similarity=0.027 Sum_probs=69.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 025612 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDK 181 (250)
Q Consensus 102 ~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 181 (250)
+.+.|++++|.+.|++..+.. +-+...|+.+-.+|.+.|++++|.+.|++..+.. +-+...|..+-..|.+.|++++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 345677777777777765421 2246677777777777777777777777766642 2245667777777777777777
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 025612 182 AMETYETMKASG-CTPHKLTFTILIRNLENAGEEELVAAVRR 222 (250)
Q Consensus 182 a~~~~~~m~~~g-~~p~~~ty~~li~~~~~~g~~~~a~~~~~ 222 (250)
|.+.|++..+.. -.++.......+..+.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777765531 12222222222333666677777777666
No 163
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.65 E-value=0.0011 Score=57.24 Aligned_cols=125 Identities=10% Similarity=0.014 Sum_probs=95.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPD-------------LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR 164 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~-------------~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 164 (250)
+-..+.+.|++++|...|++..+...-.++ ...|+.+-.+|.+.|++++|...|++..+.. +-+..
T Consensus 274 ~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 352 (457)
T 1kt0_A 274 KGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEK 352 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHH
Confidence 556677889999999999987652211111 5889999999999999999999999987642 23678
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 025612 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTP-HKLTFTILIRNLENAGEEELVAA-VRRDCI 225 (250)
Q Consensus 165 ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~-~~~~m~ 225 (250)
.|..+-.+|...|++++|...|++..+. .| +...+..+-.++.+.++.+++.+ +++.|.
T Consensus 353 a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 353 GLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999998874 45 44677888888888888887764 455554
No 164
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.64 E-value=0.00013 Score=50.25 Aligned_cols=56 Identities=16% Similarity=0.063 Sum_probs=25.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELK 155 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~ 155 (250)
+-.++.+.|++++|...|++..+. . +-+...|..+-.+|.+.|++++|...|++..
T Consensus 33 lg~~~~~~~~~~~A~~~~~~al~~-~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 33 LGSTFRTLGEYRKAEAVLANGVKQ-F-PNHQALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-C-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444445555555555554431 1 1124444444445555555555555554443
No 165
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.62 E-value=0.0021 Score=51.52 Aligned_cols=92 Identities=11% Similarity=-0.035 Sum_probs=75.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 176 (250)
.+-..+.+.|++++|...|....+.. +-+...|..+-.+|.+.|++++|...+++..+.. +-+...|..+-.+|...
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 85 (281)
T 2c2l_A 9 EQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEM 85 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 35567788999999999999987531 2368888899999999999999999999887642 23567888888999999
Q ss_pred CChHHHHHHHHHHHH
Q 025612 177 GMIDKAMETYETMKA 191 (250)
Q Consensus 177 g~~~~a~~~~~~m~~ 191 (250)
|++++|...|++..+
T Consensus 86 g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 86 ESYDEAIANLQRAYS 100 (281)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988765
No 166
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.61 E-value=0.0013 Score=50.13 Aligned_cols=120 Identities=13% Similarity=0.096 Sum_probs=91.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCC-HHHHHH----------------HHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 025612 99 LTELRRQNELDLALKVFNFVRKEVWYKPD-LSLYSD----------------MILMLGKNKQIAMAEELFCELKKEGLDP 161 (250)
Q Consensus 99 l~~~~~~~~~~~a~~~~~~m~~~~g~~~~-~~~y~~----------------li~~~~~~~~~~~A~~~~~~m~~~g~~p 161 (250)
-..+.+.|++++|...|+...+. .|+ ...|.. +-..|.+.|++++|...|++..+.. +-
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 86 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIAL---NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PN 86 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CC
Confidence 34567899999999999998753 343 445555 8888999999999999999987742 23
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC--HHHHHHHHHHH
Q 025612 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP-HKLTFTILIRNLENAGE--EELVAAVRRDC 224 (250)
Q Consensus 162 ~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~--~~~a~~~~~~m 224 (250)
+...|..+-..|...|++++|...|++..+. .| +..+|..+-..|...|+ .+.+...++..
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~ 150 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKL 150 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999874 35 56778888777766554 33444444443
No 167
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.61 E-value=0.0011 Score=53.33 Aligned_cols=129 Identities=9% Similarity=-0.048 Sum_probs=96.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhcCcccH-H--HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHH
Q 025612 65 QAVHAMKLAKSSSKLEEGFQSRICRLLKADL-L--DTLTELRRQNELDLALKVFNFVRKEVWYKPD----LSLYSDMILM 137 (250)
Q Consensus 65 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~-~--~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~----~~~y~~li~~ 137 (250)
.....+...|++++|.++|+.+...+ |+. . .+-..+.+.+++++|+..|....+ .|+ ...+..+=.+
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~----~~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK----WPDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG----CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc----cCCcccHHHHHHHHHHH
Confidence 34677888999999999999886543 322 2 455578899999999999986532 222 2356677788
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 025612 138 LGKNKQIAMAEELFCELKKEGLDPD--TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF 201 (250)
Q Consensus 138 ~~~~~~~~~A~~~~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty 201 (250)
+.+.|++++|++.|++.......|. .......-.++.+.|+.++|..+|+++... .|+...+
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~ 244 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVA 244 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHH
Confidence 9999999999999999875443354 335666677888999999999999999884 4663333
No 168
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.56 E-value=0.0016 Score=45.07 Aligned_cols=87 Identities=13% Similarity=0.033 Sum_probs=37.4
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCH
Q 025612 136 LMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTP-HKLTFTILIRNLENAGEE 214 (250)
Q Consensus 136 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~ 214 (250)
..+.+.|++++|...|++..+.. +-+...|..+-..+...|++++|...|++..+. .| +...+..+-.+|.+.|++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 33444444444444444443320 113344444444444444444444444444332 12 233444444444444444
Q ss_pred HHHHHHHHHHH
Q 025612 215 ELVAAVRRDCI 225 (250)
Q Consensus 215 ~~a~~~~~~m~ 225 (250)
++|.+.++...
T Consensus 102 ~~A~~~~~~al 112 (121)
T 1hxi_A 102 NAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 169
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.56 E-value=0.0038 Score=56.64 Aligned_cols=165 Identities=9% Similarity=0.047 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHhcCChhHHH-HHHHHHHHhcCcccHH---HHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCCC-
Q 025612 61 SEAIQAVHAMKLAKSSSKLE-EGFQSRICRLLKADLL---DTLTELRRQNELDLALKVFNFVRKEV--------WYKPD- 127 (250)
Q Consensus 61 ~~~~~ll~~~~~~~~~~~a~-~l~~~m~~~~~~~~~~---~ll~~~~~~~~~~~a~~~~~~m~~~~--------g~~~~- 127 (250)
.-++...+-+...|+.++|. .++++... .++.+.. ..+...-+.|+++.|.++|+.+.+.. .-.|+
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~-~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~ 422 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQ-CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTN 422 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcc
Confidence 33444455566778888886 99998874 2333332 46666778899999999999987420 00132
Q ss_pred -----------HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHCC
Q 025612 128 -----------LSLYSDMILMLGKNKQIAMAEELFCELKKE-G-LDPDTRVYTEMIGVYLQV-GMIDKAMETYETMKASG 193 (250)
Q Consensus 128 -----------~~~y~~li~~~~~~~~~~~A~~~~~~m~~~-g-~~p~~~ty~~li~~~~~~-g~~~~a~~~~~~m~~~g 193 (250)
..+|-..++...+.|..+.|..+|....+. + ..+......+.+. .+. ++.+.|..+|+...+.
T Consensus 423 ~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE--~~~~~d~e~Ar~ife~~Lk~- 499 (679)
T 4e6h_A 423 ESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIE--YHISKDTKTACKVLELGLKY- 499 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHH--HTTTSCCHHHHHHHHHHHHH-
T ss_pred hhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHH-
Confidence 346888888888999999999999998775 2 2233333333333 233 5699999999998775
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 025612 194 CTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVE 229 (250)
Q Consensus 194 ~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~ 229 (250)
+.-+..-+...++.....|+.+.|..+|+......-
T Consensus 500 ~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 500 FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 333566677888888889999999999999887654
No 170
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.53 E-value=0.0016 Score=55.66 Aligned_cols=99 Identities=13% Similarity=0.016 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHH-HHHhcCChHHHHHHHHHHHHCC-------------
Q 025612 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR--VYTEMIG-VYLQVGMIDKAMETYETMKASG------------- 193 (250)
Q Consensus 130 ~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--ty~~li~-~~~~~g~~~~a~~~~~~m~~~g------------- 193 (250)
.|..+-..|...|++++|.+.|++..+....|... .+..+.. .+...|+.++|+..|++..+..
T Consensus 336 ~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l 415 (472)
T 4g1t_A 336 VCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKL 415 (472)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHH
T ss_pred hhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 34445555556666666666666655442222111 1111111 1234556666666555543311
Q ss_pred ----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 025612 194 ----------CTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 194 ----------~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g 228 (250)
-..+..+|..+-..|...|++++|.+.|++..+.|
T Consensus 416 ~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 416 QKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 01233455555555666666666666666555443
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.46 E-value=0.0076 Score=50.70 Aligned_cols=164 Identities=13% Similarity=0.004 Sum_probs=116.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhc-CcccHH------HHHHHH-HHcCCHHHHHHHHHHHHH---hCCCCCC-HHH
Q 025612 63 AIQAVHAMKLAKSSSKLEEGFQSRICRL-LKADLL------DTLTEL-RRQNELDLALKVFNFVRK---EVWYKPD-LSL 130 (250)
Q Consensus 63 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~-~~~~~~------~ll~~~-~~~~~~~~a~~~~~~m~~---~~g~~~~-~~~ 130 (250)
...+...|...|++++|.+++....... ..++.. ..+..+ ...|+.+.|.+++..... ..+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4457888999999999999999876422 112211 223322 245889999998887642 2232333 567
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhC--CC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC--HH
Q 025612 131 YSDMILMLGKNKQIAMAEELFCELKKE--GL--DP-DTRVYTEMIGVYLQVGMIDKAMETYETMKAS----GCTPH--KL 199 (250)
Q Consensus 131 y~~li~~~~~~~~~~~A~~~~~~m~~~--g~--~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~ 199 (250)
+..|...|...|++++|..++++.... +. ++ ...+|..++..|...|++++|..+++..... +..|. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 889999999999999999999987542 22 12 2457888999999999999999999886542 22222 25
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 200 TFTILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 200 ty~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
.+..+...+...|+++.|...|.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 567777788889999999888777643
No 172
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.44 E-value=0.0028 Score=55.22 Aligned_cols=125 Identities=8% Similarity=-0.009 Sum_probs=91.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHhc---C---cccHH----HHHHHHHHcCCHHHHHHHHHHHHH----hCC-CCC-CHHHH
Q 025612 68 HAMKLAKSSSKLEEGFQSRICRL---L---KADLL----DTLTELRRQNELDLALKVFNFVRK----EVW-YKP-DLSLY 131 (250)
Q Consensus 68 ~~~~~~~~~~~a~~l~~~m~~~~---~---~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~----~~g-~~~-~~~~y 131 (250)
..+...|++++|..++++..+.. + .|++. .|..+|...|++++|..++++..+ ..| -.| ...+|
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34567899999999999976421 2 23333 477888899999999999998642 112 122 26779
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHh---CCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 025612 132 SDMILMLGKNKQIAMAEELFCELKK---EGLDPD----TRVYTEMIGVYLQVGMIDKAMETYETMKAS 192 (250)
Q Consensus 132 ~~li~~~~~~~~~~~A~~~~~~m~~---~g~~p~----~~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 192 (250)
+.|-..|...|++++|+.++++... .-+-|| ..+.+.+-.++...|.+++|+.+|..+++.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987543 212233 344566667888899999999999999763
No 173
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.43 E-value=0.0024 Score=53.50 Aligned_cols=119 Identities=13% Similarity=0.054 Sum_probs=86.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-------------CCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEV-------------WYK-PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDT 163 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~-------------g~~-~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 163 (250)
+-..+.+.|++++|...|++..+.. ... .+...|+.+-.+|.+.|++++|.+.+++..+.. +-+.
T Consensus 229 ~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~ 307 (370)
T 1ihg_A 229 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNT 307 (370)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhH
Confidence 4455667778888877777765300 011 235778888889999999999999999887742 2357
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 025612 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTP-HKLTFTILIRNLENAGEEELVAA 219 (250)
Q Consensus 164 ~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~ 219 (250)
..|..+-.+|...|++++|.+.|++..+. .| +...+..+-..+...++.+++.+
T Consensus 308 ~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 308 KALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888889999999999999999988764 34 55667777777777777766654
No 174
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.42 E-value=0.0029 Score=45.84 Aligned_cols=68 Identities=18% Similarity=0.203 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 025612 128 LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK 198 (250)
Q Consensus 128 ~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 198 (250)
...|..+-.+|.+.|++++|...+++..+.. +-+...|..+-.+|...|++++|...|+...+. .|+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 4567777777777788888877777766532 234667777777777778888888777776663 3543
No 175
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.39 E-value=0.015 Score=41.99 Aligned_cols=99 Identities=12% Similarity=0.029 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhC-------C----------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 025612 129 SLYSDMILMLGKNKQIAMAEELFCELKKE-------G----------LDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA 191 (250)
Q Consensus 129 ~~y~~li~~~~~~~~~~~A~~~~~~m~~~-------g----------~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 191 (250)
..+...=..+.+.|++++|...|.+.... . -+-+...|..+-.+|.+.|++++|...++...+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34445555556666666666666554432 0 011346788899999999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 025612 192 SGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 192 ~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g 228 (250)
.. .-+...|..+-.+|...|++++|.+.|+...+..
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 53 2367889999999999999999999999987653
No 176
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.36 E-value=0.022 Score=48.80 Aligned_cols=151 Identities=7% Similarity=-0.038 Sum_probs=83.4
Q ss_pred HHHHHHhcC---ChhHHHHHHHHHHHhcCcccH--HHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 025612 66 AVHAMKLAK---SSSKLEEGFQSRICRLLKADL--LDTLTELRRQ----NELDLALKVFNFVRKEVWYKPDLSLYSDMIL 136 (250)
Q Consensus 66 ll~~~~~~~---~~~~a~~l~~~m~~~~~~~~~--~~ll~~~~~~----~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~ 136 (250)
+-..+...| +.++|...|++..+.|..... ..+-..|... +++++|.+.|+... . -+...+..|-.
T Consensus 182 Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa--~---g~~~a~~~Lg~ 256 (452)
T 3e4b_A 182 LATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA--P---GYPASWVSLAQ 256 (452)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG--G---GSTHHHHHHHH
T ss_pred HHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc--C---CCHHHHHHHHH
Confidence 344455556 666777777776666554433 2233333222 46677777776653 1 23344444444
Q ss_pred H-H--HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 025612 137 M-L--GKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG-----MIDKAMETYETMKASGCTPHKLTFTILIRNL 208 (250)
Q Consensus 137 ~-~--~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~ 208 (250)
. | ...+++++|.+.|++..+.| +...+..|-..|. .| +.++|.+.|++-. . -+...+..|-..|
T Consensus 257 ~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y 328 (452)
T 3e4b_A 257 LLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIY 328 (452)
T ss_dssp HHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHH
Confidence 4 3 34667777777777766655 5555555555555 34 6666766666555 2 2444454554555
Q ss_pred Hh----cCCHHHHHHHHHHHHhccC
Q 025612 209 EN----AGEEELVAAVRRDCIQYVE 229 (250)
Q Consensus 209 ~~----~g~~~~a~~~~~~m~~~g~ 229 (250)
.. ..++++|.++|+...+.|.
T Consensus 329 ~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 329 RRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 44 2366666666666665554
No 177
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.30 E-value=0.0015 Score=43.70 Aligned_cols=65 Identities=11% Similarity=0.024 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 025612 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS 192 (250)
Q Consensus 127 ~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 192 (250)
+...|..+-..+.+.|++++|.+.|++..+.. +.+...|..+-.+|.+.|++++|.+.|++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45566777777778888888888887766541 235677777777888888888888888877763
No 178
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.26 E-value=0.025 Score=39.99 Aligned_cols=113 Identities=9% Similarity=-0.052 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHH
Q 025612 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ----VGMIDK 181 (250)
Q Consensus 106 ~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~ 181 (250)
+++++|.+.|....+ .| .|+.. |=..|...+.+++|.+.|++-.+.| +...+..|-..|.. .++.++
T Consensus 9 ~d~~~A~~~~~~aa~-~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACE-LN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHH-TT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHc-CC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 345666666666653 44 23322 4445555566666777777666654 56666666666666 667777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhccCC
Q 025612 182 AMETYETMKASGCTPHKLTFTILIRNLEN----AGEEELVAAVRRDCIQYVEF 230 (250)
Q Consensus 182 a~~~~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~a~~~~~~m~~~g~~ 230 (250)
|.+.|++-.+.| +...+..|-..|.. .+++++|.++|+...+.|..
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 777777766654 44556666666666 66777777777777666654
No 179
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.25 E-value=0.0056 Score=43.47 Aligned_cols=113 Identities=10% Similarity=-0.087 Sum_probs=91.4
Q ss_pred cCChhHHHHHHHHHHHhcCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCHHHHH
Q 025612 73 AKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGK----NKQIAMAE 148 (250)
Q Consensus 73 ~~~~~~a~~l~~~m~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~----~~~~~~A~ 148 (250)
.++.++|...|++..+.|..... +=..|...+.+++|.+.|....+ . -+...+..|=..|.. .+++++|.
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 35677899999998887744333 44455566778889999999875 3 367888888888887 89999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCC
Q 025612 149 ELFCELKKEGLDPDTRVYTEMIGVYLQ----VGMIDKAMETYETMKASGC 194 (250)
Q Consensus 149 ~~~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~a~~~~~~m~~~g~ 194 (250)
++|++-.+.| +...+..|-..|.. .++.++|.+.|++-.+.|.
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999998876 67888888888888 8999999999999988764
No 180
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.23 E-value=0.0089 Score=47.81 Aligned_cols=93 Identities=8% Similarity=-0.105 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhcC-cccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 025612 62 EAIQAVHAMKLAKSSSKLEEGFQSRICRLL-KADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139 (250)
Q Consensus 62 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~-~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~ 139 (250)
........+.+.|++++|...|++.....- .+... .+-.++.+.|++++|...++...+ . -+-+...|..+-.+|.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~-~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE-L-DGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-S-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHH
Confidence 344456778889999999999999876532 22222 577788899999999999999864 2 2335788999999999
Q ss_pred cCCCHHHHHHHHHHHHh
Q 025612 140 KNKQIAMAEELFCELKK 156 (250)
Q Consensus 140 ~~~~~~~A~~~~~~m~~ 156 (250)
..|++++|...|++..+
T Consensus 84 ~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYS 100 (281)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998765
No 181
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.21 E-value=0.016 Score=49.31 Aligned_cols=151 Identities=13% Similarity=0.055 Sum_probs=86.1
Q ss_pred CChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC----------
Q 025612 74 KSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN---------- 141 (250)
Q Consensus 74 ~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~---------- 141 (250)
++.++|..++++....... +... .+-..+.+.|++++|...|....+.. +-+..+|..+-..|...
T Consensus 227 ~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~y~~~~~~~~~~~~~ 304 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLHCQIGCCYRAKVFQVMNLREN 304 (472)
T ss_dssp ---CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 5556677777766543221 1222 46666777777777777777765421 22355555554444321
Q ss_pred ---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHH
Q 025612 142 ---------KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL--TFTILIR-NLE 209 (250)
Q Consensus 142 ---------~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--ty~~li~-~~~ 209 (250)
+..+.|...|++..+.. +.+..+|..+-..|...|++++|.+.|++..+....|... .+..+-. ...
T Consensus 305 ~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~ 383 (472)
T 4g1t_A 305 GMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLY 383 (472)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 22455666666554431 2234557777888888999999999998887754332221 1222221 234
Q ss_pred hcCCHHHHHHHHHHHHhc
Q 025612 210 NAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 210 ~~g~~~~a~~~~~~m~~~ 227 (250)
..|++++|.+.+.+..+.
T Consensus 384 ~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 384 QMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp TSSCHHHHHHHHHHHHHS
T ss_pred HCCCHHHHHHHHHHHHhc
Confidence 678888888888776553
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.17 E-value=0.0098 Score=49.78 Aligned_cols=100 Identities=9% Similarity=0.020 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC--------------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 025612 128 LSLYSDMILMLGKNKQIAMAEELFCELKKE--------------GLDP-DTRVYTEMIGVYLQVGMIDKAMETYETMKAS 192 (250)
Q Consensus 128 ~~~y~~li~~~~~~~~~~~A~~~~~~m~~~--------------g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 192 (250)
...|..+-..|.+.|++++|.+.|++..+. ...| +...|+.+-.+|.+.|++++|++.+++..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 445778888899999999999999987651 0122 4577889999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 025612 193 GCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 193 g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g 228 (250)
. .-+...|..+-.+|.+.|++++|.+.|+...+..
T Consensus 303 ~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 303 D-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred C-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3 2267889999999999999999999999987654
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.16 E-value=0.002 Score=55.88 Aligned_cols=114 Identities=13% Similarity=-0.033 Sum_probs=83.6
Q ss_pred HHhcCChhHHHHHHHHHHHhcCc-ccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 025612 70 MKLAKSSSKLEEGFQSRICRLLK-ADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMA 147 (250)
Q Consensus 70 ~~~~~~~~~a~~l~~~m~~~~~~-~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A 147 (250)
+.+.|++++|.+.+++..+..-. +... .+-.++.+.|++++|.+.|++..+ .. +-+...|..+-.+|.+.|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE-LD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-SC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 45679999999999998765321 2222 577788899999999999999875 32 33578899999999999999999
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHH--HHhcCChHHHHHHHH
Q 025612 148 EELFCELKKEGLDP-DTRVYTEMIGV--YLQVGMIDKAMETYE 187 (250)
Q Consensus 148 ~~~~~~m~~~g~~p-~~~ty~~li~~--~~~~g~~~~a~~~~~ 187 (250)
.+.|++..+. .| +...+..+-.+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999998764 23 23344444444 888899999999988
No 184
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.12 E-value=0.013 Score=42.90 Aligned_cols=62 Identities=6% Similarity=0.044 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 165 VYTEMIGVYLQVGMIDKAMETYETMKAS-----GCTPHK-LTF----TILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 165 ty~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p~~-~ty----~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
.|+.+-.++.+.|++++|+..|++-.+. -+.|+. ..| ...-.++...|++++|.+.|+...+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7777777777788888887777776652 225654 456 6777888888999999888888743
No 185
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.11 E-value=0.013 Score=50.36 Aligned_cols=97 Identities=9% Similarity=-0.031 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 025612 128 LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD----------------TRVYTEMIGVYLQVGMIDKAMETYETMKA 191 (250)
Q Consensus 128 ~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~----------------~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 191 (250)
...|..+-..|.+.|++++|...|++..+. .|+ ...|+.+-.+|.+.|++++|+..|++..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 567888889999999999999999988763 222 58899999999999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 025612 192 SGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 192 ~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
.. .-+...|..+-.+|...|++++|.+.|+...+.
T Consensus 346 ~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 346 LD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 53 236788999999999999999999999998765
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.10 E-value=0.0012 Score=54.51 Aligned_cols=94 Identities=11% Similarity=0.029 Sum_probs=52.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 025612 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK-LTFTILIRNL 208 (250)
Q Consensus 130 ~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~ty~~li~~~ 208 (250)
.|+.+-.+|.+.|++++|...|++..+.. +-+...|..+-.+|...|++++|...|++..+. .|+. ..+..+-...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
Confidence 78888889999999999999999877642 236788889999999999999999999987663 4543 3344444332
Q ss_pred -HhcCCHHHHHHHHHHHHh
Q 025612 209 -ENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 209 -~~~g~~~~a~~~~~~m~~ 226 (250)
...+..+.+.++|..|..
T Consensus 309 ~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 234566777778877754
No 187
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.05 E-value=0.024 Score=41.38 Aligned_cols=108 Identities=15% Similarity=0.034 Sum_probs=77.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCC-----C-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-----CCCCCH
Q 025612 99 LTELRRQNELDLALKVFNFVRKEVWYKP-----D-----LSLYSDMILMLGKNKQIAMAEELFCELKKE-----GLDPDT 163 (250)
Q Consensus 99 l~~~~~~~~~~~a~~~~~~m~~~~g~~~-----~-----~~~y~~li~~~~~~~~~~~A~~~~~~m~~~-----g~~p~~ 163 (250)
-..+.+.|++++|...|+...+-..-.| + ...|+.+-.++.+.|++++|+..+++..+. .+.||.
T Consensus 18 G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~ 97 (159)
T 2hr2_A 18 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 97 (159)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCch
Confidence 3456677888888888887654211100 2 238899999999999999999999887662 226653
Q ss_pred -HHH----HHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHHHHHH
Q 025612 164 -RVY----TEMIGVYLQVGMIDKAMETYETMKA-----SGCTPHKLTFTILIR 206 (250)
Q Consensus 164 -~ty----~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~ty~~li~ 206 (250)
..| ...-.++...|++++|+..|++..+ .|+.+........+.
T Consensus 98 ~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~ 150 (159)
T 2hr2_A 98 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI 150 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 567 7888899999999999999998754 477776665555444
No 188
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.96 E-value=0.014 Score=39.36 Aligned_cols=79 Identities=9% Similarity=-0.071 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 025612 110 LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETM 189 (250)
Q Consensus 110 ~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m 189 (250)
.|...|+...+ . -+.+...|..+-..|...|++++|...|++..... +.+...|..+-..|...|++++|...|++.
T Consensus 3 ~a~~~~~~al~-~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLA-Q-GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHT-T-TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-h-CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35556666543 1 12356677777777888888888888887766542 224566777777777888888888877776
Q ss_pred HH
Q 025612 190 KA 191 (250)
Q Consensus 190 ~~ 191 (250)
.+
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 189
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.93 E-value=0.011 Score=50.76 Aligned_cols=87 Identities=10% Similarity=0.014 Sum_probs=68.5
Q ss_pred cCCCHHHHHHHHHHHHh---CCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CC-CCCCH-HHHHHHH
Q 025612 140 KNKQIAMAEELFCELKK---EGLDPD----TRVYTEMIGVYLQVGMIDKAMETYETMKA-----SG-CTPHK-LTFTILI 205 (250)
Q Consensus 140 ~~~~~~~A~~~~~~m~~---~g~~p~----~~ty~~li~~~~~~g~~~~a~~~~~~m~~-----~g-~~p~~-~ty~~li 205 (250)
+.|++++|+.++++..+ +-+.|+ ..+++.|...|...|++++|+.++++..+ .| -.|+. .+|+.|-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45789999999987654 223333 47899999999999999999999998753 12 24444 6799999
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 025612 206 RNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 206 ~~~~~~g~~~~a~~~~~~m~~ 226 (250)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988643
No 190
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.91 E-value=0.016 Score=49.55 Aligned_cols=92 Identities=11% Similarity=0.051 Sum_probs=70.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCCH-H
Q 025612 134 MILMLGKNKQIAMAEELFCELKKE---GLDPD----TRVYTEMIGVYLQVGMIDKAMETYETMKAS------GCTPHK-L 199 (250)
Q Consensus 134 li~~~~~~~~~~~A~~~~~~m~~~---g~~p~----~~ty~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~~-~ 199 (250)
.+..+.+.|++++|..++++..+. -+.|+ ..+++.|...|...|++++|+.++++...- .-.|+. .
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 355566788999999999887653 12232 567899999999999999999999876531 233443 6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025612 200 TFTILIRNLENAGEEELVAAVRRDCI 225 (250)
Q Consensus 200 ty~~li~~~~~~g~~~~a~~~~~~m~ 225 (250)
+|+.|-..|...|++++|+.++++..
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 68889999999999999999888764
No 191
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=96.90 E-value=0.14 Score=43.87 Aligned_cols=119 Identities=13% Similarity=0.150 Sum_probs=84.3
Q ss_pred HHHHHHHHcC---CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 025612 97 DTLTELRRQN---ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN----KQIAMAEELFCELKKEGLDPDTRVYTEM 169 (250)
Q Consensus 97 ~ll~~~~~~~---~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~----~~~~~A~~~~~~m~~~g~~p~~~ty~~l 169 (250)
.+-..|.+.| +.++|.+.|....+ .| .++...+..|-..|... +++++|.+.|++.. .| +...+..|
T Consensus 181 ~Lg~~~~~~g~~~~~~~A~~~~~~aa~-~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~L 254 (452)
T 3e4b_A 181 ELATVYQKKQQPEQQAELLKQMEAGVS-RG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSL 254 (452)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-TT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHH
T ss_pred HHHHHHHHcCCcccHHHHHHHHHHHHH-CC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHH
Confidence 4556666778 78888888888764 44 34555556666666554 68889999888876 33 45555555
Q ss_pred HHH-H--HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHH
Q 025612 170 IGV-Y--LQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG-----EEELVAAVRRDCI 225 (250)
Q Consensus 170 i~~-~--~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g-----~~~~a~~~~~~m~ 225 (250)
-.. | ...|+.++|.+.|++..+.| +...+..|-..|. .| ++++|.++|+...
T Consensus 255 g~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 255 AQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 555 3 45788999999998888776 5566666666666 45 8888888888766
No 192
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.89 E-value=0.023 Score=36.05 Aligned_cols=63 Identities=14% Similarity=0.158 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 025612 128 LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA 191 (250)
Q Consensus 128 ~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 191 (250)
...|..+-..|.+.|++++|...|++..+.. +-+...|..+-..|.+.|++++|...|++..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3455556666666667777766666655431 22455566666666666777777766666655
No 193
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.88 E-value=0.028 Score=51.39 Aligned_cols=104 Identities=10% Similarity=0.016 Sum_probs=72.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 025612 100 TELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179 (250)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 179 (250)
......|+++.|+++.+.+ .+...|..|-..+.+.++++.|.++|..+.. |..+...|...|+.
T Consensus 660 ~~~l~~~~~~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~ 723 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNK 723 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCH
T ss_pred ehhhhcCCHHHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCH
Confidence 3445667777777765443 3678899999999999999999999998765 45566666667777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025612 180 DKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCI 225 (250)
Q Consensus 180 ~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~ 225 (250)
+...++-+.....|- ++.-..+|.+.|++++|.+++.++.
T Consensus 724 ~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 724 EGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 776666655555442 2444555666777777777776654
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.80 E-value=0.029 Score=37.75 Aligned_cols=80 Identities=10% Similarity=0.101 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025612 146 MAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCI 225 (250)
Q Consensus 146 ~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~ 225 (250)
.|...|++..+.. +-+...|..+-..|...|++++|...|++..+.. ..+...|..+-.+|...|++++|.+.|+...
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4667777776542 3367889999999999999999999999987753 2356788999999999999999999999887
Q ss_pred hc
Q 025612 226 QY 227 (250)
Q Consensus 226 ~~ 227 (250)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 195
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.75 E-value=0.016 Score=49.56 Aligned_cols=88 Identities=7% Similarity=0.046 Sum_probs=68.9
Q ss_pred HcCCHHHHHHHHHHHHHh--CCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHh---C--C-CCCC-HHHHHHHH
Q 025612 104 RQNELDLALKVFNFVRKE--VWYKPD----LSLYSDMILMLGKNKQIAMAEELFCELKK---E--G-LDPD-TRVYTEMI 170 (250)
Q Consensus 104 ~~~~~~~a~~~~~~m~~~--~g~~~~----~~~y~~li~~~~~~~~~~~A~~~~~~m~~---~--g-~~p~-~~ty~~li 170 (250)
+.|++++|..++++..+. .-+.|+ ..++|.|...|...|++++|..++++... + | -.|+ ..+||.|-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457899999999986431 223333 67899999999999999999999988653 1 2 2333 47799999
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 025612 171 GVYLQVGMIDKAMETYETMKA 191 (250)
Q Consensus 171 ~~~~~~g~~~~a~~~~~~m~~ 191 (250)
..|...|++++|+.+|++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999987643
No 196
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.75 E-value=0.01 Score=39.26 Aligned_cols=64 Identities=20% Similarity=0.153 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 025612 127 DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA 191 (250)
Q Consensus 127 ~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 191 (250)
+...+..+-..|.+.|++++|.+.|++..+.. +-+...|..+-.+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566667777777777777777777765532 12345666677777777777777777766543
No 197
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.74 E-value=0.015 Score=49.79 Aligned_cols=94 Identities=12% Similarity=-0.011 Sum_probs=74.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHh---C--C-CCCC-H
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKE--VWYKPD----LSLYSDMILMLGKNKQIAMAEELFCELKK---E--G-LDPD-T 163 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~--~g~~~~----~~~y~~li~~~~~~~~~~~A~~~~~~m~~---~--g-~~p~-~ 163 (250)
..+..+.+.|++++|..++++..+. .-+.|+ ..+++.|...|...|++++|+.++++... . | -.|+ .
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 3566777899999999999987632 222332 67899999999999999999999987653 1 1 2233 5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 025612 164 RVYTEMIGVYLQVGMIDKAMETYETMK 190 (250)
Q Consensus 164 ~ty~~li~~~~~~g~~~~a~~~~~~m~ 190 (250)
.+|+.|-..|...|++++|+.++++..
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 779999999999999999999998764
No 198
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.74 E-value=0.011 Score=48.81 Aligned_cols=96 Identities=9% Similarity=-0.023 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH------------------HHHHHHHHHHhcCChHHHHHHHHHHH
Q 025612 129 SLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR------------------VYTEMIGVYLQVGMIDKAMETYETMK 190 (250)
Q Consensus 129 ~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~------------------ty~~li~~~~~~g~~~~a~~~~~~m~ 190 (250)
..|..+-..|.+.|++++|...|++.... .|+.. .|+.+-.+|.+.|++++|...|++..
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555556666677777777777665442 23332 78889999999999999999999987
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 025612 191 ASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 191 ~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
+.. .-+...|..+-.+|...|++++|.+.|+...+.
T Consensus 258 ~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 258 TEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 743 236788999999999999999999999988654
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.55 E-value=0.022 Score=37.60 Aligned_cols=65 Identities=12% Similarity=0.051 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 025612 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 162 ~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
+...|..+-..|.+.|++++|...|++..+.. .-+...|..+-.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57788899999999999999999999988753 124578999999999999999999999987754
No 200
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.54 E-value=0.17 Score=43.88 Aligned_cols=28 Identities=7% Similarity=-0.173 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 025612 62 EAIQAVHAMKLAKSSSKLEEGFQSRICR 89 (250)
Q Consensus 62 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~ 89 (250)
-++..+.-+...|+.++|..++++....
T Consensus 215 lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 215 VYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 3444566667788999999999988766
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.37 E-value=0.076 Score=33.46 Aligned_cols=66 Identities=12% Similarity=0.167 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 025612 162 DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 162 ~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g 228 (250)
+...|..+-..|...|++++|...|++..+.. ..+...+..+-..+.+.|++++|.+.+++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 35677888889999999999999999987653 2367788899999999999999999999988754
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.26 E-value=0.082 Score=34.73 Aligned_cols=67 Identities=12% Similarity=0.195 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 025612 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 161 p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g 228 (250)
++...|..+-..+.+.|++++|.+.|++..+.. ..+...|..+-.++.+.|++++|.+.++...+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 356678888899999999999999999987752 2367889999999999999999999999988654
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.85 E-value=0.081 Score=38.52 Aligned_cols=101 Identities=15% Similarity=0.011 Sum_probs=69.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC----------HHHHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 025612 103 RRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ----------IAMAEELFCELKKEGLDP-DTRVYTEMIG 171 (250)
Q Consensus 103 ~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~----------~~~A~~~~~~m~~~g~~p-~~~ty~~li~ 171 (250)
.+.+.+++|.+.++...+.. +-+...|+.+=.++...++ +++|+..|++..+- .| +...|..+-.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHH
Confidence 35566778888888776532 2256666666666666554 45888888887663 34 4567888888
Q ss_pred HHHhcC-----------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 025612 172 VYLQVG-----------MIDKAMETYETMKASGCTPHKLTFTILIRNLE 209 (250)
Q Consensus 172 ~~~~~g-----------~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~ 209 (250)
+|...| ++++|.+.|++..+ +.|+...|..-+...-
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 887764 78999999988887 4687777666555443
No 204
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=95.83 E-value=0.58 Score=37.91 Aligned_cols=159 Identities=8% Similarity=-0.085 Sum_probs=113.4
Q ss_pred CChhHHHHHHHHHHHhcCcccHHH---HHHHHHHcCCHH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC-----
Q 025612 74 KSSSKLEEGFQSRICRLLKADLLD---TLTELRRQNELD--LALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ----- 143 (250)
Q Consensus 74 ~~~~~a~~l~~~m~~~~~~~~~~~---ll~~~~~~~~~~--~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~----- 143 (250)
+++++++.+++.+.+..-+ +..+ ---.+.+.|.++ +++++++.+.+ .. .-|-+.|+---..+.+.+.
T Consensus 124 ~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~-~d-~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVID-TD-LKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHhccccchhh
Confidence 7888999999998764322 2211 122233456666 99999999986 33 3377888877777777776
Q ss_pred -HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 025612 144 -IAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDK-AMETYETMKASG--CTPHKLTFTILIRNLENAGEEELVAA 219 (250)
Q Consensus 144 -~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~-a~~~~~~m~~~g--~~p~~~ty~~li~~~~~~g~~~~a~~ 219 (250)
++++++.++++.... +-|...|+-+-..+.+.|.... +..+.....+.+ -..+...+..+.+.|.+.|+.++|.+
T Consensus 201 ~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 201 TIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 889999998877642 3478889888888888887444 556777765533 23478899999999999999999999
Q ss_pred HHHHHHh--ccCCchHHHH
Q 025612 220 VRRDCIQ--YVEFPERFLE 236 (250)
Q Consensus 220 ~~~~m~~--~g~~pd~~~~ 236 (250)
+++.+.+ ..+..+.+.+
T Consensus 280 ~~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHhccChHHHHHHHH
Confidence 9999985 3444444433
No 205
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.48 Score=35.05 Aligned_cols=129 Identities=8% Similarity=0.028 Sum_probs=66.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHhcCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 025612 68 HAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMA 147 (250)
Q Consensus 68 ~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A 147 (250)
....+.|+++.|.++-+.+ .....+..|-+...+.|+++-|++.|.... | |..|.-.|.-.|+.++.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-------D---~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQH-------S---FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-------C---HHHHHHHHHHHTCHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-------C---HHHHHHHHHHhCCHHHH
Confidence 3344556666666665543 222223356666666666666666666552 1 45555555555665555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 025612 148 EELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDC 224 (250)
Q Consensus 148 ~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m 224 (250)
.++-+.-...| -+|.-...+...|+++++.++|.+. |-.|-.+. ..-..|..+.|.++..++
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 54433333322 2455555566667777777766432 22221111 111255666677766554
No 206
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.32 E-value=0.48 Score=33.57 Aligned_cols=84 Identities=11% Similarity=0.024 Sum_probs=66.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 025612 141 NKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAV 220 (250)
Q Consensus 141 ~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~ 220 (250)
+|++......+-.+-. +....+.-+......|+-|+..+++.++.. +..|++...-.+-.||.+.|+..++.++
T Consensus 74 C~NlKrVi~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eL 147 (172)
T 1wy6_A 74 CQNLKSVVECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTL 147 (172)
T ss_dssp CSCTHHHHHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcHHHHHHHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHH
Confidence 4455555555444332 556678888999999999999999999654 3578888899999999999999999999
Q ss_pred HHHHHhccCC
Q 025612 221 RRDCIQYVEF 230 (250)
Q Consensus 221 ~~~m~~~g~~ 230 (250)
+.+.=+.|+.
T Consensus 148 l~~AC~kG~k 157 (172)
T 1wy6_A 148 LIEACKKGEK 157 (172)
T ss_dssp HHHHHHTTCH
T ss_pred HHHHHHhhhH
Confidence 9999999886
No 207
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.27 E-value=1.4 Score=38.81 Aligned_cols=168 Identities=10% Similarity=0.002 Sum_probs=117.4
Q ss_pred HHHHHHHhcCCh-hHHHHHHHHHHHhcCcccHH-----HHHHHHHHcCC-------HHHHHHHHHHHHHhCCCCCCHHHH
Q 025612 65 QAVHAMKLAKSS-SKLEEGFQSRICRLLKADLL-----DTLTELRRQNE-------LDLALKVFNFVRKEVWYKPDLSLY 131 (250)
Q Consensus 65 ~ll~~~~~~~~~-~~a~~l~~~m~~~~~~~~~~-----~ll~~~~~~~~-------~~~a~~~~~~m~~~~g~~~~~~~y 131 (250)
..+.++.+.|+. ++|++.++++....-.-... .++..+.+... ++++.++++.+.+. . +-+...|
T Consensus 33 ~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~-~-pK~y~aW 110 (567)
T 1dce_A 33 QAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-N-PKSYGTW 110 (567)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-C-TTCHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh-C-CCCHHHH
Confidence 345555555555 47899999987543321111 24444443221 89999999999753 2 3367889
Q ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 025612 132 SDMILMLGKNK--QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG-MIDKAMETYETMKASGCTPHKLTFTILIRNL 208 (250)
Q Consensus 132 ~~li~~~~~~~--~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~ 208 (250)
+.--..+.+.+ +++++.+.++++.+.. .-|...|+---..+.+.| .++++++.++++.+.... |...|+..-..+
T Consensus 111 ~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll 188 (567)
T 1dce_A 111 HHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLL 188 (567)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHH
Confidence 88888888889 7799999999998853 337788888777778888 899999999999876533 677788777777
Q ss_pred Hhc--------------CCHHHHHHHHHHHHhccC-CchHHHH
Q 025612 209 ENA--------------GEEELVAAVRRDCIQYVE-FPERFLE 236 (250)
Q Consensus 209 ~~~--------------g~~~~a~~~~~~m~~~g~-~pd~~~~ 236 (250)
.+. +.++++.+.++......- -...+.|
T Consensus 189 ~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y 231 (567)
T 1dce_A 189 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFY 231 (567)
T ss_dssp HHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHH
T ss_pred HhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHH
Confidence 663 457888888877765432 2444444
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.15 E-value=0.59 Score=38.93 Aligned_cols=66 Identities=15% Similarity=0.079 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 025612 160 DPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 160 ~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
..+..+|.++-..+...|++++|...+++....+ |+...|..+=..+.-.|++++|.+.+.+..+.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3345555555444444455555555555555543 55555544455555555555555555554443
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.07 E-value=0.2 Score=32.19 Aligned_cols=54 Identities=17% Similarity=0.019 Sum_probs=27.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 025612 101 ELRRQNELDLALKVFNFVRKEVWYKPDLS-LYSDMILMLGKNKQIAMAEELFCELKK 156 (250)
Q Consensus 101 ~~~~~~~~~~a~~~~~~m~~~~g~~~~~~-~y~~li~~~~~~~~~~~A~~~~~~m~~ 156 (250)
.+.+.|++++|...|+...+. . +.+.. .|..+-.+|.+.|++++|.+.|++..+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~-~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQT-E-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH-C-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH-C-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555555555555431 1 11334 455555555555555555555555444
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.98 E-value=0.23 Score=31.90 Aligned_cols=56 Identities=23% Similarity=0.286 Sum_probs=44.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCC-CHH-HHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 025612 135 ILMLGKNKQIAMAEELFCELKKEGLDP-DTR-VYTEMIGVYLQVGMIDKAMETYETMKAS 192 (250)
Q Consensus 135 i~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~-ty~~li~~~~~~g~~~~a~~~~~~m~~~ 192 (250)
...+.+.|++++|...|++..+. .| +.. .|..+-..|...|++++|...|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44567788999999999887764 34 456 7888888888899999999999888764
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.95 E-value=1.3 Score=36.95 Aligned_cols=75 Identities=15% Similarity=-0.028 Sum_probs=63.7
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 025612 125 KPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTI 203 (250)
Q Consensus 125 ~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ 203 (250)
..+..+|.++-..+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.|++-... .|...||..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHH
Confidence 5678889888877777899999999999998875 88888877788888999999999999987773 588887654
No 212
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.71 E-value=0.3 Score=32.38 Aligned_cols=64 Identities=11% Similarity=-0.025 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 025612 128 LSLYSDMILMLGKNKQIAMAEELFCELKKE------GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA 191 (250)
Q Consensus 128 ~~~y~~li~~~~~~~~~~~A~~~~~~m~~~------g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 191 (250)
...+-.|=..+.+.|+++.|...|++..+. +-.+....|..|..+|.+.|++++|...+++..+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 334444455555555555555555543321 0112344555555666666666666666665554
No 213
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=94.57 E-value=0.14 Score=37.19 Aligned_cols=97 Identities=12% Similarity=0.087 Sum_probs=72.2
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 025612 140 KNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM----------IDKAMETYETMKASGCTP-HKLTFTILIRNL 208 (250)
Q Consensus 140 ~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~ 208 (250)
+.+.+++|.+.++...+.. +-+...|+.+-.++...|+ +++|+..|++..+. .| +...|..+=.+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHH
Confidence 4456889999998877642 3367788878777777765 45999999998874 46 557899999999
Q ss_pred HhcC-----------CHHHHHHHHHHHHhccCCchHHHHHHH
Q 025612 209 ENAG-----------EEELVAAVRRDCIQYVEFPERFLEEVY 239 (250)
Q Consensus 209 ~~~g-----------~~~~a~~~~~~m~~~g~~pd~~~~~~~ 239 (250)
...| ++++|.+.|++..+..-....+.+.+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 8874 899999999998876544444444443
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.47 E-value=0.81 Score=32.93 Aligned_cols=86 Identities=16% Similarity=0.055 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHH
Q 025612 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNK---QIAMAEELFCELKKEGLDP--DTRVYTEMIGVYLQVGMIDKA 182 (250)
Q Consensus 108 ~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~---~~~~A~~~~~~m~~~g~~p--~~~ty~~li~~~~~~g~~~~a 182 (250)
+..+.+-|.+..+ .|. ++..+--.+-.++++.+ +++++..+|++..+.. .| +...+=.|--+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~-~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKA-AGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHH-TTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHc-cCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 4455566665543 333 57777777777777777 5567888888776653 23 122222333455788888888
Q ss_pred HHHHHHHHHCCCCCCH
Q 025612 183 METYETMKASGCTPHK 198 (250)
Q Consensus 183 ~~~~~~m~~~g~~p~~ 198 (250)
.+.++...+ +.|+.
T Consensus 91 ~~y~~~lL~--ieP~n 104 (152)
T 1pc2_A 91 LKYVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHHHH--HCTTC
T ss_pred HHHHHHHHh--cCCCC
Confidence 888888777 45744
No 215
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=93.99 E-value=0.8 Score=39.68 Aligned_cols=77 Identities=19% Similarity=0.182 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 025612 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186 (250)
Q Consensus 107 ~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~ 186 (250)
+.+.|..+|+...+..+ -+...|...++...+.|+.+.|..+|+.... ....|...+.-=...|+.+.+..++
T Consensus 335 d~~~ar~ife~al~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~ 407 (493)
T 2uy1_A 335 SRATPYNIFSSGLLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELV 407 (493)
T ss_dssp CSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45555555555543221 1233344445555555555555555555421 3444555554444455555555555
Q ss_pred HHHH
Q 025612 187 ETMK 190 (250)
Q Consensus 187 ~~m~ 190 (250)
++..
T Consensus 408 ~~~~ 411 (493)
T 2uy1_A 408 DQKM 411 (493)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 216
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=93.93 E-value=2.1 Score=34.62 Aligned_cols=163 Identities=9% Similarity=-0.008 Sum_probs=113.9
Q ss_pred HHHHHHHHHHhcCCh-hHHHHHHHHHHHhcCcccHH----HHHHHHHHcC--CHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 025612 62 EAIQAVHAMKLAKSS-SKLEEGFQSRICRLLKADLL----DTLTELRRQN--ELDLALKVFNFVRKEVWYKPDLSLYSDM 134 (250)
Q Consensus 62 ~~~~ll~~~~~~~~~-~~a~~l~~~m~~~~~~~~~~----~ll~~~~~~~--~~~~a~~~~~~m~~~~g~~~~~~~y~~l 134 (250)
+++..+++..+.|.. ++|+.+++.++.. .|+.. .--..+...+ .+++++++++.+.+. + +-+...|+.-
T Consensus 34 ~~~~~~~a~~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~-n-Pk~y~aW~~R 109 (306)
T 3dra_A 34 QIMGLLLALMKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD-N-EKNYQIWNYR 109 (306)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH-C-TTCCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH-C-cccHHHHHHH
Confidence 344456666666655 5899999998754 33333 1222233455 899999999998753 2 2245556544
Q ss_pred HHHH----HcC---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCCCHHHHHHHH
Q 025612 135 ILML----GKN---KQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID--KAMETYETMKASGCTPHKLTFTILI 205 (250)
Q Consensus 135 i~~~----~~~---~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~--~a~~~~~~m~~~g~~p~~~ty~~li 205 (250)
-..+ .+. +++++++++++.+.+.. +-|...|+----.+.+.|.++ +++++++.+.+.... |...|+.--
T Consensus 110 ~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~ 187 (306)
T 3dra_A 110 QLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRF 187 (306)
T ss_dssp HHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 4444 444 78999999999998752 347778887777778888888 999999999886543 777888777
Q ss_pred HHHHhcCC------HHHHHHHHHHHHhccCC
Q 025612 206 RNLENAGE------EELVAAVRRDCIQYVEF 230 (250)
Q Consensus 206 ~~~~~~g~------~~~a~~~~~~m~~~g~~ 230 (250)
..+.+.++ ++++.+.++.+......
T Consensus 188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~ 218 (306)
T 3dra_A 188 FLLFSKKHLATDNTIDEELNYVKDKIVKCPQ 218 (306)
T ss_dssp HHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHhCCC
Confidence 77777776 88888888887766554
No 217
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.82 E-value=0.41 Score=40.16 Aligned_cols=69 Identities=14% Similarity=0.085 Sum_probs=49.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHH
Q 025612 132 SDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA-----SGCTPHKLTF 201 (250)
Q Consensus 132 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~ty 201 (250)
..++..+...|++++|...+..+... -+.+...|-.+|.+|.+.|+..+|++.|+...+ .|+.|+..+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34556666788888888777776543 234677888888888888888888888877643 3888887653
No 218
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.73 E-value=1.3 Score=31.79 Aligned_cols=112 Identities=13% Similarity=0.124 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHcCCCH------HHHHHHHHHHHhCCCCCCHH----HHHHHHH---HHHhcCChHHHHHHHHHHHHCC
Q 025612 127 DLSLYSDMILMLGKNKQI------AMAEELFCELKKEGLDPDTR----VYTEMIG---VYLQVGMIDKAMETYETMKASG 193 (250)
Q Consensus 127 ~~~~y~~li~~~~~~~~~------~~A~~~~~~m~~~g~~p~~~----ty~~li~---~~~~~g~~~~a~~~~~~m~~~g 193 (250)
|..+|=..+...-+.|++ +...++|++... .++|+.. .|--|-- .+-..+++++|.++|+.+++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 444555555555555665 666667776544 3555421 1111110 1123488999999999987654
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCchHHHHHHHH
Q 025612 194 CTPHKLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVYQ 240 (250)
Q Consensus 194 ~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~~~ 240 (250)
-+. ...|...-+-=.+.|++..|.+++..-...+-.|...+..-.+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 444 5666666666678999999999999999988888776665333
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.71 E-value=0.23 Score=45.24 Aligned_cols=132 Identities=15% Similarity=0.110 Sum_probs=89.6
Q ss_pred HHHHHhcCChhHHHH-HHHHHHHhcCc-ccH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 025612 67 VHAMKLAKSSSKLEE-GFQSRICRLLK-ADL-LDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ 143 (250)
Q Consensus 67 l~~~~~~~~~~~a~~-l~~~m~~~~~~-~~~-~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~ 143 (250)
.......+++++|.+ ++.. ++ .+. ..++..+-+.|.+++|.++.+.-.. -.......|+
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~-----i~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~-------------~f~~~l~~~~ 667 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPN-----VEGKDSLTKIARFLEGQEYYEEALNISPDQDQ-------------KFELALKVGQ 667 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGG-----CCCHHHHHHHHHHHHHTTCHHHHHHHCCCHHH-------------HHHHHHHHTC
T ss_pred HhHHHHhCCHHHHHHHHHhc-----CCchHHHHHHHHHHHhCCChHHheecCCCcch-------------heehhhhcCC
Confidence 344456788888877 5521 11 111 3577778889999999876643211 1334567899
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-------CCCCHHHHHHHHHHHHhcCCHHH
Q 025612 144 IAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG-------CTPHKLTFTILIRNLENAGEEEL 216 (250)
Q Consensus 144 ~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g-------~~p~~~ty~~li~~~~~~g~~~~ 216 (250)
+++|.++.+.+ .+...|..|-..+.+.|+++.|.+.|..+.+.. ..-+..-...+.+.....|+++.
T Consensus 668 ~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~ 741 (814)
T 3mkq_A 668 LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNL 741 (814)
T ss_dssp HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHH
Confidence 99999886554 377899999999999999999999999875421 12234445556666666777777
Q ss_pred HHHHHH
Q 025612 217 VAAVRR 222 (250)
Q Consensus 217 a~~~~~ 222 (250)
|..++-
T Consensus 742 A~~~~~ 747 (814)
T 3mkq_A 742 AFNAYW 747 (814)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.46 E-value=1 Score=32.40 Aligned_cols=84 Identities=17% Similarity=0.054 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 025612 143 QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG---MIDKAMETYETMKASGCTP--HKLTFTILIRNLENAGEEELV 217 (250)
Q Consensus 143 ~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p--~~~ty~~li~~~~~~g~~~~a 217 (250)
.+..+.+-|++-...|- ++..+--.+-.++++.+ +.+++..++++..+.. .| +...+-.|--+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 34567777777666554 78888888888889988 6779999999987764 34 233444455567999999999
Q ss_pred HHHHHHHHhcc
Q 025612 218 AAVRRDCIQYV 228 (250)
Q Consensus 218 ~~~~~~m~~~g 228 (250)
.+.++.+.+..
T Consensus 91 ~~y~~~lL~ie 101 (152)
T 1pc2_A 91 LKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999987653
No 221
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.98 E-value=2 Score=31.66 Aligned_cols=109 Identities=14% Similarity=0.131 Sum_probs=82.0
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 025612 94 DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVY 173 (250)
Q Consensus 94 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~ 173 (250)
|...=.+.....|+++.|.++.+.+ + +...|..|-+...+.|+++-|.++|..... |..+.--|
T Consensus 7 D~~~rF~LAL~lg~l~~A~e~a~~l-~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly 70 (177)
T 3mkq_B 7 DPHIRFDLALEYGNLDAALDEAKKL-N------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLY 70 (177)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHH-C------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHH
T ss_pred ChHHHHHHHHhcCCHHHHHHHHHHh-C------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHH
Confidence 3334456667899999999998876 2 688999999999999999999999999765 55666667
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 025612 174 LQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDC 224 (250)
Q Consensus 174 ~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m 224 (250)
.-.|+.+...++-+.-...| -++.-...+.-.|+++++.+++.+.
T Consensus 71 ~~tg~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 71 LVTGDVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 77888888776666555554 2345555666777888887777443
No 222
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.60 E-value=1.2 Score=37.39 Aligned_cols=117 Identities=13% Similarity=0.022 Sum_probs=84.8
Q ss_pred CCHHHHHHHHHHHH---cCCCHHHHHHHHHHHHhC--CC-CCCH------------------HHHHHHHHHHHhcCChHH
Q 025612 126 PDLSLYSDMILMLG---KNKQIAMAEELFCELKKE--GL-DPDT------------------RVYTEMIGVYLQVGMIDK 181 (250)
Q Consensus 126 ~~~~~y~~li~~~~---~~~~~~~A~~~~~~m~~~--g~-~p~~------------------~ty~~li~~~~~~g~~~~ 181 (250)
.|...|..++.... ..|+.+.|.+.+.+.... |- -++. .....++..+...|+.++
T Consensus 110 ~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~ 189 (388)
T 2ff4_A 110 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASA 189 (388)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 35666666665433 357888888888776542 31 1111 123445667778999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----ccCCchHHHHHHHHhhh
Q 025612 182 AMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ-----YVEFPERFLEEVYQKHR 243 (250)
Q Consensus 182 a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~pd~~~~~~~~~~~ 243 (250)
+....+...... ..+...|..+|.++.+.|+..+|.+.|+.+.+ .|+.|..-+..+...-.
T Consensus 190 a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~il 255 (388)
T 2ff4_A 190 VIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERIL 255 (388)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 999998886542 34778999999999999999999999988754 59999988888776644
No 223
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.24 E-value=1.7 Score=30.87 Aligned_cols=119 Identities=11% Similarity=-0.014 Sum_probs=85.6
Q ss_pred HHhcCChhHHHHHHHHHHHhcCc--ccHH--------------HHHHHHH------HcCCHHHHHHHHHHHHHhCCCCCC
Q 025612 70 MKLAKSSSKLEEGFQSRICRLLK--ADLL--------------DTLTELR------RQNELDLALKVFNFVRKEVWYKPD 127 (250)
Q Consensus 70 ~~~~~~~~~a~~l~~~m~~~~~~--~~~~--------------~ll~~~~------~~~~~~~a~~~~~~m~~~~g~~~~ 127 (250)
+...|..++..++..+..+.... .++. ..++..+ .+|++......+..+- -+
T Consensus 17 ~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n------~~ 90 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINN------TL 90 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTT------CC
T ss_pred HHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhc------ch
Confidence 34557888888888877644322 1221 1333332 3466666666666553 24
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 025612 128 LSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCT 195 (250)
Q Consensus 128 ~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 195 (250)
..-.+.-++.+...|+-+.-.+++.++.. +.+|+....-.+-.+|.+.|+..++.+++.+.-+.|++
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 56678889999999999999999999644 46788888889999999999999999999999988875
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=91.99 E-value=1.6 Score=28.21 Aligned_cols=65 Identities=9% Similarity=0.012 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 025612 126 PDLSLYSDMILMLGKNKQ---IAMAEELFCELKKEGLDP-DTRVYTEMIGVYLQVGMIDKAMETYETMKAS 192 (250)
Q Consensus 126 ~~~~~y~~li~~~~~~~~---~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 192 (250)
.|...+..+-.++...++ .++|..+|++.... .| +......+-..+.+.|++++|...|+.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345555555555543333 56666666665552 23 3344444456666667777777777766654
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=91.98 E-value=1.6 Score=35.11 Aligned_cols=112 Identities=13% Similarity=0.037 Sum_probs=80.2
Q ss_pred HHHHHHHHH-HHHcC--CC------HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CChHHHHHHHHHHH
Q 025612 128 LSLYSDMIL-MLGKN--KQ------IAMAEELFCELKKEGLDPD---TRVYTEMIGVYLQV-----GMIDKAMETYETMK 190 (250)
Q Consensus 128 ~~~y~~li~-~~~~~--~~------~~~A~~~~~~m~~~g~~p~---~~ty~~li~~~~~~-----g~~~~a~~~~~~m~ 190 (250)
.-.|..++. .+... |+ ...|..++++..+ +.|+ -..|..|...|.+. |+.++|.+.|++-.
T Consensus 154 ~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL 231 (301)
T 3u64_A 154 TLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLT 231 (301)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHH
Confidence 455665554 44443 33 3456666666555 4666 56799999999995 99999999999998
Q ss_pred HCCCCC--CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhccCC--chHH-HHHHHHhhh
Q 025612 191 ASGCTP--HKLTFTILIRNLENA-GEEELVAAVRRDCIQYVEF--PERF-LEEVYQKHR 243 (250)
Q Consensus 191 ~~g~~p--~~~ty~~li~~~~~~-g~~~~a~~~~~~m~~~g~~--pd~~-~~~~~~~~~ 243 (250)
+. .| +..++...-+.+++. |+.+.+.+.+++....... |+.. ...++++..
T Consensus 232 ~L--nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~q~eA 288 (301)
T 3u64_A 232 RY--CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILSQKRA 288 (301)
T ss_dssp HH--CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHHHHHH
T ss_pred Hh--CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHH
Confidence 84 46 367777888888884 9999999999999987766 6644 444555444
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.94 E-value=1.7 Score=28.45 Aligned_cols=67 Identities=7% Similarity=-0.051 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 025612 161 PDTRVYTEMIGVYLQVGMIDKAMETYETMKAS------GCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 161 p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~ 227 (250)
.+..-+-.|-..+.+.|+++.|...|+...+. +-.+....+..|-.+|.+.|+++.|...+++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 35555667888899999999999999886542 12345678999999999999999999999998764
No 227
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=91.43 E-value=2.3 Score=29.54 Aligned_cols=23 Identities=22% Similarity=0.118 Sum_probs=11.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHH
Q 025612 132 SDMILMLGKNKQIAMAEELFCEL 154 (250)
Q Consensus 132 ~~li~~~~~~~~~~~A~~~~~~m 154 (250)
+.+|.-|...|+.++|.+.++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 34445555555555555555554
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=91.02 E-value=3.5 Score=33.14 Aligned_cols=92 Identities=13% Similarity=0.080 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhc-
Q 025612 108 LDLALKVFNFVRKEVWYKPD---LSLYSDMILMLGKN-----KQIAMAEELFCELKKEGLDP--DTRVYTEMIGVYLQV- 176 (250)
Q Consensus 108 ~~~a~~~~~~m~~~~g~~~~---~~~y~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p--~~~ty~~li~~~~~~- 176 (250)
...|...+++..+ +.|+ -..|..|-..|.+. |+.++|.+.|++-.+- .| +..++...-..+++.
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhc
Confidence 3456666666554 4666 56899999999995 9999999999998874 45 377788888888884
Q ss_pred CChHHHHHHHHHHHHCCCC--CCHHHHHHH
Q 025612 177 GMIDKAMETYETMKASGCT--PHKLTFTIL 204 (250)
Q Consensus 177 g~~~~a~~~~~~m~~~g~~--p~~~ty~~l 204 (250)
|+.+++.+.+++....... |+....+.+
T Consensus 254 gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9999999999999997666 775544443
No 229
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=91.00 E-value=6.4 Score=33.15 Aligned_cols=152 Identities=9% Similarity=-0.049 Sum_probs=93.7
Q ss_pred HHHHHHhcCChh---HHHHHHHHHHHh----cCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 025612 66 AVHAMKLAKSSS---KLEEGFQSRICR----LLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILML 138 (250)
Q Consensus 66 ll~~~~~~~~~~---~a~~l~~~m~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~ 138 (250)
++...|..|..+ +|.+.|+..... .++|+....+-+.+-. .-++-..+++...+ ..+..-=+.++.++
T Consensus 203 ~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~Vy~~~~~-~~~~~~~l~~~y~~----s~~~~ek~~ll~aL 277 (419)
T 3rjo_A 203 LLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGAQ-STEGWDFLYSKYQF----SLSSTEKSQIEFAL 277 (419)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHHHHHHHTT-SHHHHHHHHHHHHH----CCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcceeEEeeeeC-CHHHHHHHHHHHhc----CCCHHHHHHHHHHc
Confidence 577788888765 778888887653 2677877655555433 34444566666654 34667788999999
Q ss_pred HcCCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC-ChHHHHHHHH----HHHHCCCCCCHHHHHHHHHHHHhc-
Q 025612 139 GKNKQIAMAEELFCELKKEGL-DPDTRVYTEMIGVYLQVG-MIDKAMETYE----TMKASGCTPHKLTFTILIRNLENA- 211 (250)
Q Consensus 139 ~~~~~~~~A~~~~~~m~~~g~-~p~~~ty~~li~~~~~~g-~~~~a~~~~~----~m~~~g~~p~~~ty~~li~~~~~~- 211 (250)
+...+.+...++++......+ ++.... .++.+.+... ..+.|++.+. .+.+. +.++...+..+|...+..
T Consensus 278 ~~s~d~~ll~~~L~~~l~~~~ir~qD~~--~~~~~v~~n~~g~~~aw~fl~~nw~~l~~~-~~~~~~~~~~~i~~~~~~~ 354 (419)
T 3rjo_A 278 CRTQNKEKLQWLLDESFKGDKIKTQEFP--QILTLIGRNPVGYPLAWQFLRKNWNKLVQK-FELGSSSIAHMVMGTTNQF 354 (419)
T ss_dssp TTCSCHHHHHHHHHHHHHTSSSCGGGHH--HHHHHHHTSTTTHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHHTTTTC
T ss_pred CCCCCHHHHHHHHHHHhCCCCCchhHHH--HHHHHHhcCcchHHHHHHHHHHHHHHHHHH-hCcCchhHHHHHHHHhhcC
Confidence 999999999999998877653 443322 2344444332 2445666554 23332 223446777788776543
Q ss_pred ---CCHHHHHHHHHHHH
Q 025612 212 ---GEEELVAAVRRDCI 225 (250)
Q Consensus 212 ---g~~~~a~~~~~~m~ 225 (250)
.+.++.+++|+.-.
T Consensus 355 ~t~~~l~e~~~Ff~~~~ 371 (419)
T 3rjo_A 355 STRTRLEEVKGFFSSLK 371 (419)
T ss_dssp CSHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHhCc
Confidence 34555666665443
No 230
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.68 E-value=2.6 Score=28.04 Aligned_cols=63 Identities=16% Similarity=0.224 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 025612 143 QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIR 206 (250)
Q Consensus 143 ~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~ 206 (250)
+.-+..+-++.+....+.|+.....+.+++|-+.+++.-|.++|+-.+.. +.+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 45566666777766677777777777777777777777777777766543 1122334555443
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.60 E-value=2.3 Score=29.44 Aligned_cols=95 Identities=17% Similarity=0.070 Sum_probs=58.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHH---HHHHHHHHHhCCCCC-CHHH-HHHHHHHH
Q 025612 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAM---AEELFCELKKEGLDP-DTRV-YTEMIGVY 173 (250)
Q Consensus 99 l~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~---A~~~~~~m~~~g~~p-~~~t-y~~li~~~ 173 (250)
++.-.....+..+.+-|..... .|. ++..+--.+-.++++.++... ++.++++....+ .| +..- .=-|--++
T Consensus 8 l~~~~~~~~l~~~~~~y~~e~~-~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 8 LNELVSVEDLLKFEKKFQSEKA-AGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHhc-cCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHH
Confidence 3333444455566666665543 332 666666677777887777655 777888776653 12 1221 22234577
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCH
Q 025612 174 LQVGMIDKAMETYETMKASGCTPHK 198 (250)
Q Consensus 174 ~~~g~~~~a~~~~~~m~~~g~~p~~ 198 (250)
.+.|++++|.+.++.+.+ +.|+.
T Consensus 85 yklg~Y~~A~~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHhhhHHHHHHHHHHHHH--hCCCC
Confidence 888888888888888877 45644
No 232
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.42 E-value=7.8 Score=35.47 Aligned_cols=124 Identities=14% Similarity=0.089 Sum_probs=80.1
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHcCCC-HHHHHHHHHHHHhC------CCCCC-HH-
Q 025612 97 DTLTELRRQNE-LDLALKVFNFVRKEVWYKPDLS--LYSDMILMLGKNKQ-IAMAEELFCELKKE------GLDPD-TR- 164 (250)
Q Consensus 97 ~ll~~~~~~~~-~~~a~~~~~~m~~~~g~~~~~~--~y~~li~~~~~~~~-~~~A~~~~~~m~~~------g~~p~-~~- 164 (250)
+++.-+...++ ++.|..+|+.+.+. .|... ...++|..+.+.++ --+|..++++..+. ...+. ..
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~---~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKK---DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 46666666766 68899999999753 34322 23444555444443 22455555544321 12221 11
Q ss_pred ----HH-HHHHH----HHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025612 165 ----VY-TEMIG----VYLQVGMIDKAMETYETMKASGCTPH-KLTFTILIRNLENAGEEELVAAVRRDCI 225 (250)
Q Consensus 165 ----ty-~~li~----~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~~~~~m~ 225 (250)
.+ ..|+. -|...|+++-|+.+-++-.. ..|+ ..||-.|..+|...|+++.|.-.++-+-
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11 12333 34568999999999998877 3565 7999999999999999999999988873
No 233
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=87.90 E-value=3 Score=29.89 Aligned_cols=22 Identities=14% Similarity=0.058 Sum_probs=11.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 025612 97 DTLTELRRQNELDLALKVFNFV 118 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m 118 (250)
.+|..|...|+.++|.+.++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3455555555555555555544
No 234
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=87.76 E-value=10 Score=30.95 Aligned_cols=156 Identities=10% Similarity=0.031 Sum_probs=110.5
Q ss_pred HHHHHHhcCChh-HHHHHHHHHHHhcCcccHH-------HHHHHHHHcC-------CHHHHHHHHHHHHHhCCCCCCHHH
Q 025612 66 AVHAMKLAKSSS-KLEEGFQSRICRLLKADLL-------DTLTELRRQN-------ELDLALKVFNFVRKEVWYKPDLSL 130 (250)
Q Consensus 66 ll~~~~~~~~~~-~a~~l~~~m~~~~~~~~~~-------~ll~~~~~~~-------~~~~a~~~~~~m~~~~g~~~~~~~ 130 (250)
.+....+.|..+ +|+.+++.+... .|+.. .++..+.+.. .+++++.+++.+.+. . +-+..+
T Consensus 35 ~~~~~~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~-~-PKny~a 110 (331)
T 3dss_A 35 AVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-N-PKSYGT 110 (331)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-C-TTCHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh-C-CCCHHH
Confidence 355555666666 899999998743 34333 3666555532 267889999988752 2 337788
Q ss_pred HHHHHHHHHcCC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 025612 131 YSDMILMLGKNK--QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM-IDKAMETYETMKASGCTPHKLTFTILIRN 207 (250)
Q Consensus 131 y~~li~~~~~~~--~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~ty~~li~~ 207 (250)
|+.--..+.+.+ .++++..+++.+.+.. +-|...|+----.+...|. ++++++.++.+.+.... |...|+..-..
T Consensus 111 W~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~l 188 (331)
T 3dss_A 111 WHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCL 188 (331)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 888777777777 4899999999998753 3477778777777777888 58999999999886533 66777777666
Q ss_pred HHhc--------------CCHHHHHHHHHHHHhc
Q 025612 208 LENA--------------GEEELVAAVRRDCIQY 227 (250)
Q Consensus 208 ~~~~--------------g~~~~a~~~~~~m~~~ 227 (250)
+.+. +.++++.+.+......
T Consensus 189 l~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~ 222 (331)
T 3dss_A 189 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 222 (331)
T ss_dssp HHHHSCCC------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccccchHHHHHHHHHHHHHHHh
Confidence 6655 4577777777776654
No 235
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.69 E-value=4.8 Score=28.28 Aligned_cols=62 Identities=16% Similarity=0.220 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 025612 143 QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILI 205 (250)
Q Consensus 143 ~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li 205 (250)
|.-+..+-++.+....+.|+.....+.+++|-+.+++.-|.++|+-.+.. +.+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 44456666666666667777777777777777777777777777766544 122233455544
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=87.66 E-value=6.2 Score=28.38 Aligned_cols=97 Identities=15% Similarity=0.111 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCCh------hHHHHHHHHHHHhcCcccHH----HHHHH------HHHcCCHHHHHHHHHHHHHhCCCC
Q 025612 62 EAIQAVHAMKLAKSS------SKLEEGFQSRICRLLKADLL----DTLTE------LRRQNELDLALKVFNFVRKEVWYK 125 (250)
Q Consensus 62 ~~~~ll~~~~~~~~~------~~a~~l~~~m~~~~~~~~~~----~ll~~------~~~~~~~~~a~~~~~~m~~~~g~~ 125 (250)
++...+..+-+.|++ ++..++|++... .++|+.. ..|.. +-..+++++|.++|+.+.+ .+-.
T Consensus 15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~-~hKk 92 (161)
T 4h7y_A 15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA-NCKK 92 (161)
T ss_dssp HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH-HCTT
T ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HhHH
Confidence 444446666667888 777778877654 3444321 11111 1122566677777776653 2222
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 025612 126 PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDP 161 (250)
Q Consensus 126 ~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 161 (250)
- ...|-.--..=.+.|++..|.+++..-...+-+|
T Consensus 93 F-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 93 F-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp B-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred H-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 2 5555555555566777777777776666655443
No 237
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=87.30 E-value=11 Score=30.96 Aligned_cols=159 Identities=9% Similarity=-0.002 Sum_probs=110.4
Q ss_pred HHHHHHhc-CChhHHHHHHHHHHHhcCcccHH----HHHHHHHHcC-CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 025612 66 AVHAMKLA-KSSSKLEEGFQSRICRLLKADLL----DTLTELRRQN-ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139 (250)
Q Consensus 66 ll~~~~~~-~~~~~a~~l~~~m~~~~~~~~~~----~ll~~~~~~~-~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~ 139 (250)
.+++..+. ...++|+++++.+.... |+.. ---..+...| .+++++++++.+.+ .. +-+...|+.--..+.
T Consensus 59 ~~r~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~-~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 59 YFRAIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV-QN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-TT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-hC-CCcHHHHHHHHHHHH
Confidence 35555555 55568999999987543 3322 1112223446 59999999999975 33 336778887777776
Q ss_pred cC-C-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 025612 140 KN-K-QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMID--------KAMETYETMKASGCTPHKLTFTILIRNLE 209 (250)
Q Consensus 140 ~~-~-~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~p~~~ty~~li~~~~ 209 (250)
+. + ++++++++++.+.+.. +-|...|+----.+.+.|.++ ++++.++++.+.... |...|+..-..+.
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRV 212 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHT
T ss_pred HhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 65 6 8899999999998752 336777766555555555555 899999999886543 7788888888888
Q ss_pred hcCC-------HHHHHHHHHHHHhccCC
Q 025612 210 NAGE-------EELVAAVRRDCIQYVEF 230 (250)
Q Consensus 210 ~~g~-------~~~a~~~~~~m~~~g~~ 230 (250)
+.++ ++++.+.++........
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~P~ 240 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLIPH 240 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred hccccccchHHHHHHHHHHHHHHHhCCC
Confidence 8776 67788888777765443
No 238
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=86.80 E-value=16 Score=32.16 Aligned_cols=119 Identities=7% Similarity=-0.068 Sum_probs=90.9
Q ss_pred CHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 025612 107 ELDLALKVFNFVRKEVWYKP-DLSLYSDMILMLGKNKQ----------IAMAEELFCELKKEGLDPDTRVYTEMIGVYLQ 175 (250)
Q Consensus 107 ~~~~a~~~~~~m~~~~g~~~-~~~~y~~li~~~~~~~~----------~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~ 175 (250)
.-++|.+.++.+.+. .| +...|+.-=.++.+.|+ ++++.++++.+.+.. +-+...|+.=-..+.+
T Consensus 44 ~~eeal~~~~~~l~~---nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 44 LDESVLELTSQILGA---NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHH---CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 346789999998753 34 45667655455555555 899999999987752 2366778877777788
Q ss_pred cC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhccCC
Q 025612 176 VG--MIDKAMETYETMKASGCTPHKLTFTILIRNLENAG-EEELVAAVRRDCIQYVEF 230 (250)
Q Consensus 176 ~g--~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g-~~~~a~~~~~~m~~~g~~ 230 (250)
.| +++++++.++.+.+...+ |...|+.---++.+.| .++++.+.++.+.+....
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~ 176 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS 176 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC
T ss_pred cccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC
Confidence 88 779999999999886533 7788988888888888 899999999888876655
No 239
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=86.48 E-value=4.8 Score=25.89 Aligned_cols=65 Identities=5% Similarity=-0.078 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 025612 162 DTRVYTEMIGVYLQVGM---IDKAMETYETMKASGCTP-HKLTFTILIRNLENAGEEELVAAVRRDCIQYV 228 (250)
Q Consensus 162 ~~~ty~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g 228 (250)
|...+..+-.++...++ .++|..++++..+. .| +......+-..+.+.|++++|.+.|+.+.+..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 44455555555543333 56666666666553 23 33445555566666666666666666666543
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.05 E-value=9.7 Score=32.38 Aligned_cols=152 Identities=12% Similarity=0.102 Sum_probs=95.6
Q ss_pred CChhHHHHHHHHHHHhc-Cccc----H---HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHcCCC
Q 025612 74 KSSSKLEEGFQSRICRL-LKAD----L---LDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLY--SDMILMLGKNKQ 143 (250)
Q Consensus 74 ~~~~~a~~l~~~m~~~~-~~~~----~---~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y--~~li~~~~~~~~ 143 (250)
++++.|.+.+-.+.+.. ...| . ..++..|.+.++++...+.+..+.+.+|..+...+. +.++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 66777777776665421 1111 1 169999999999999999888887766654443221 333333333333
Q ss_pred HHHH--HHHHHHHHh--CC-CCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHh
Q 025612 144 IAMA--EELFCELKK--EG-LDP---DTRVYTEMIGVYLQVGMIDKAMETYETMKAS--GCTPH---KLTFTILIRNLEN 210 (250)
Q Consensus 144 ~~~A--~~~~~~m~~--~g-~~p---~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~---~~ty~~li~~~~~ 210 (250)
.+.. ..+.+.... .| +-. .......|...|-..|++.+|.++++.+... |.... ...|...++.|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 3322 222222111 11 111 2233456778899999999999999998643 33222 2568888999999
Q ss_pred cCCHHHHHHHHHHHH
Q 025612 211 AGEEELVAAVRRDCI 225 (250)
Q Consensus 211 ~g~~~~a~~~~~~m~ 225 (250)
.+++..|..++....
T Consensus 190 ~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 190 KGDYSQATVLSRKIL 204 (445)
T ss_dssp HTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998874
No 241
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.89 E-value=5.8 Score=26.34 Aligned_cols=53 Identities=6% Similarity=-0.075 Sum_probs=46.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-ccCC
Q 025612 178 MIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ-YVEF 230 (250)
Q Consensus 178 ~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~-~g~~ 230 (250)
+.-++.+-++.+....+.|++....+.++||-|.+++-.|.++|...+. .|-.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~ 78 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH 78 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 5557788888888889999999999999999999999999999999884 4444
No 242
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.05 E-value=6.4 Score=37.85 Aligned_cols=69 Identities=10% Similarity=-0.075 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC-CH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCchHH
Q 025612 166 YTEMIGVYLQVGMIDKAMETYETMKAS-GCTP-HK--LTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERF 234 (250)
Q Consensus 166 y~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p-~~--~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~ 234 (250)
|..++.-|-+.|.++.+.++-..-.+. +-.+ +. ..|..+++++...|++++|...+-.+......-|.+
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cL 974 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCL 974 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHH
Confidence 566666666666666666665543322 1111 11 246666777777777777766666665555554433
No 243
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=84.97 E-value=16 Score=30.58 Aligned_cols=163 Identities=12% Similarity=0.019 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhcCc-ccH------HHHHHHHHHcC-CH----HHHHHHHHHHHHhCCCCCCHH
Q 025612 62 EAIQAVHAMKLAKSSSKLEEGFQSRICRLLK-ADL------LDTLTELRRQN-EL----DLALKVFNFVRKEVWYKPDLS 129 (250)
Q Consensus 62 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~------~~ll~~~~~~~-~~----~~a~~~~~~m~~~~g~~~~~~ 129 (250)
..+.+...|.+.|+.++..+++.....--.. |-. ..+|+.+.... .. +-..+.+++..++...=....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788899999999999999876532211 111 14777776643 33 334444444443211000111
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHH
Q 025612 130 LYSDMILMLGKNKQIAMAEELFCELKKE--GLDPD---TRVYTEMIGVYLQVGMIDKAMETYETMKAS--GCTPHKLTFT 202 (250)
Q Consensus 130 ~y~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~---~~ty~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~ty~ 202 (250)
+=.-|...|...|++.+|.+++.++... .+... ...|-.-+..|...|++.++...+..-+.. .+.|++.+-
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~- 179 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ- 179 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH-
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH-
Confidence 2236889999999999999999988763 22111 234667788899999999999999876543 333444332
Q ss_pred HHHHHH-----H-hcCCHHHHHHHHHHHH
Q 025612 203 ILIRNL-----E-NAGEEELVAAVRRDCI 225 (250)
Q Consensus 203 ~li~~~-----~-~~g~~~~a~~~~~~m~ 225 (250)
..++.| . ..+++..|...|-+.-
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 333332 3 6788999888776653
No 244
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=83.78 E-value=6.9 Score=27.04 Aligned_cols=87 Identities=15% Similarity=0.041 Sum_probs=60.8
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCC
Q 025612 139 GKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDK---AMETYETMKASGCTP--HKLTFTILIRNLENAGE 213 (250)
Q Consensus 139 ~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~---a~~~~~~m~~~g~~p--~~~ty~~li~~~~~~g~ 213 (250)
.....+..+.+-|++-...|- |+..|--.+-.++++.+..++ +..++++....+ .| ...-.-.|--++.+.|+
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhh
Confidence 333445566677776655444 777776677778888877666 888898887764 23 22333345567889999
Q ss_pred HHHHHHHHHHHHhc
Q 025612 214 EELVAAVRRDCIQY 227 (250)
Q Consensus 214 ~~~a~~~~~~m~~~ 227 (250)
++.|.+.++.+.+.
T Consensus 90 Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 90 YEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=83.24 E-value=9 Score=35.07 Aligned_cols=122 Identities=11% Similarity=-0.004 Sum_probs=74.6
Q ss_pred HHHHHHhcCC-hhHHHHHHHHHHHhcCcccHH---HHHHHHHHcCC-HHHHHHHHHHHHHh-----CCCCC-CHH-----
Q 025612 66 AVHAMKLAKS-SSKLEEGFQSRICRLLKADLL---DTLTELRRQNE-LDLALKVFNFVRKE-----VWYKP-DLS----- 129 (250)
Q Consensus 66 ll~~~~~~~~-~~~a~~l~~~m~~~~~~~~~~---~ll~~~~~~~~-~~~a~~~~~~m~~~-----~g~~~-~~~----- 129 (250)
+++.+...++ .+.|..+|+++....-..+.. .+|..+.+.+. --+|.++.++..+. ....+ +..
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~ 333 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLM 333 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccccc
Confidence 3555555666 578999999987654333332 23333333322 22344444443221 11111 111
Q ss_pred -----HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 025612 130 -----LYSDMILMLGKNKQIAMAEELFCELKKEGLDP-DTRVYTEMIGVYLQVGMIDKAMETYETM 189 (250)
Q Consensus 130 -----~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~~~~~m 189 (250)
..+.=.+.|...|+++.|+++-++-... .| +-.||-.|..+|.+.|+++.|+-.+..+
T Consensus 334 ~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 334 NCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred CcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1112234456789999999999887663 45 4789999999999999999999999887
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.84 E-value=13 Score=27.07 Aligned_cols=63 Identities=14% Similarity=0.010 Sum_probs=45.5
Q ss_pred CCCcHHHHHHHHHHHhcCChhHHHHHHHHHHHhc-Cccc-----HH-----HHHHHHHHcCCHHHHHHHHHHHH
Q 025612 57 RVLSSEAIQAVHAMKLAKSSSKLEEGFQSRICRL-LKAD-----LL-----DTLTELRRQNELDLALKVFNFVR 119 (250)
Q Consensus 57 ~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~-~~~~-----~~-----~ll~~~~~~~~~~~a~~~~~~m~ 119 (250)
++..|..++-++.+...+.++.|.-+.+-+.... ..|+ .. -+-+++...+++..|...|++..
T Consensus 17 ~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 17 RGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp ----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3445677888999999999999998888865322 2333 22 37788889999999999999853
No 247
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=81.60 E-value=35 Score=31.96 Aligned_cols=140 Identities=9% Similarity=0.015 Sum_probs=86.2
Q ss_pred HHHHHHhcCChh---HHHHHHHHHHHh----cCcccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 025612 66 AVHAMKLAKSSS---KLEEGFQSRICR----LLKADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILM 137 (250)
Q Consensus 66 ll~~~~~~~~~~---~a~~l~~~m~~~----~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~ 137 (250)
++...|..|..+ .|.+.|+..... .++|+.. .+...-.+.|.-++-..+++...+ ..+..--..++.+
T Consensus 692 ~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~----~~~~~ek~~ll~a 767 (909)
T 4fke_A 692 AISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQ----AQLVNEADKLRSA 767 (909)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHH----CCSHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHc----cCCHHHHHHHHHH
Confidence 577778888766 677788776543 2567777 455555677887777777887764 2355666889999
Q ss_pred HHcCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHH---HHCCCCCCHHHHHHHHHHHHhc
Q 025612 138 LGKNKQIAMAEELFCELKKEG-LDPDTRVYTEMIGVYLQVGM-IDKAMETYETM---KASGCTPHKLTFTILIRNLENA 211 (250)
Q Consensus 138 ~~~~~~~~~A~~~~~~m~~~g-~~p~~~ty~~li~~~~~~g~-~~~a~~~~~~m---~~~g~~p~~~ty~~li~~~~~~ 211 (250)
++...+.+...++++...... +++... ..++.+...... .+.|++.+.+= ....+..+..++..+|...+..
T Consensus 768 L~~~~d~~~l~~~L~~~l~~~~ir~qd~--~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~ 844 (909)
T 4fke_A 768 LACSNEVWLLNRYLGYTLNPDLIRKQDA--TSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRR 844 (909)
T ss_dssp HTTCCCHHHHHHHHHHTTCTTTSCGGGH--HHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTT
T ss_pred hCCCCCHHHHHHHHHHHhCCCCCchhhH--HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Confidence 999999999999988876543 444322 223344443322 23444444321 0111223334567777777654
No 248
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=79.47 E-value=3.8 Score=30.81 Aligned_cols=83 Identities=6% Similarity=-0.103 Sum_probs=48.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCcccHH-----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLKADLL-----DTLTELRRQNELDLALKVFNFVRKEVWYKPDLS--LYSDMILMLG 139 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~--~y~~li~~~~ 139 (250)
+...+..|+.+.+..+++.+.+.+..++.. +.+...+..|+.+-+..+++ .|..++.. .-.+.+...+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-----~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT-----AGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-----TTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH-----cCCCccccCCCCCCHHHHHH
Confidence 566777888888888887776666555432 46666677787764444333 34443321 1124455555
Q ss_pred cCCCHHHHHHHHHHH
Q 025612 140 KNKQIAMAEELFCEL 154 (250)
Q Consensus 140 ~~~~~~~A~~~~~~m 154 (250)
..|+.+-+..+++.-
T Consensus 88 ~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 88 EHRSPTCLRALLDSA 102 (241)
T ss_dssp HTTCHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHcC
Confidence 667766655555543
No 249
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=79.40 E-value=12 Score=30.80 Aligned_cols=106 Identities=12% Similarity=0.102 Sum_probs=63.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 025612 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM--IDKAMETYETMKASGCTPHKLTFTILIRN 207 (250)
Q Consensus 130 ~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~ty~~li~~ 207 (250)
..+.+|.-|...|+.++|..+++++....+.+ .+.+.++..+.-+.++ .+.+.+++..+...|+-+.......+.+.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 35778888888888888888888875432222 3445555555554433 34577777778777776665555555555
Q ss_pred HHhcCCHH--------HHHHHHHHHHhccCCchHHHH
Q 025612 208 LENAGEEE--------LVAAVRRDCIQYVEFPERFLE 236 (250)
Q Consensus 208 ~~~~g~~~--------~a~~~~~~m~~~g~~pd~~~~ 236 (250)
+....++. ...+++..+...|+.|-.|+.
T Consensus 298 l~~ldDl~lDiP~A~~~la~~varai~~g~l~~~f~~ 334 (358)
T 3eiq_C 298 YNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRD 334 (358)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCHHHHT
T ss_pred HHhccHhhcccccHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 55443322 234445555566666655543
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=79.32 E-value=43 Score=32.15 Aligned_cols=142 Identities=13% Similarity=0.034 Sum_probs=89.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC--------------------
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKP-------------------- 126 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~-------------------- 126 (250)
+..+.+.+..+.|.++....... +....-+-.++...|++++|.+.|.+.- .|+..
T Consensus 819 ~~~l~~~~~~~~~~~l~~~~~~~--~~~~yl~g~~~L~~ge~~~A~~~F~kaa--~~~~~~~~l~~~~~~~~~~~~~~~~ 894 (1139)
T 4fhn_B 819 VEKLFLFKQYNACMQLIGWLNSD--PIAVYLKALIYLKSKEAVKAVRCFKTTS--LVLYSHTSQFAVLREFQEIAEKYHH 894 (1139)
T ss_dssp HHHHHHHSCTTHHHHHHHHSCCC--HHHHHHHHHHHHHTTCHHHHHHHHHTCC--CSCTTCCCSCSSHHHHHHHHHTTTS
T ss_pred HHHHHHhhhHHHHHHHhhhccCC--cHHHHHHHHHHHhcCCHHHHHHHHHHHh--hhhcccchhhhhhcccccccccccc
Confidence 44455556665555443322111 0011134455678999999999998752 22211
Q ss_pred ---CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCC-C--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 025612 127 ---DLSLYSDMILMLGKNKQIAMAEELFCELKKE-GLDP-D--TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL 199 (250)
Q Consensus 127 ---~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p-~--~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 199 (250)
-..=|.-++..+-+.+.++.+.++-..-.+. +-.+ + ...|..+.+++...|++++|...+-.+.....+ ..
T Consensus 895 ~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~ 972 (1139)
T 4fhn_B 895 QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KS 972 (1139)
T ss_dssp CCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HH
T ss_pred cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HH
Confidence 1233677888888889988888766544332 2122 1 125899999999999999999999888876554 35
Q ss_pred HHHHHHHHHHhcCCH
Q 025612 200 TFTILIRNLENAGEE 214 (250)
Q Consensus 200 ty~~li~~~~~~g~~ 214 (250)
....||...+..|..
T Consensus 973 cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 973 CLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHhCCCh
Confidence 566777777766543
No 251
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=79.17 E-value=44 Score=31.60 Aligned_cols=155 Identities=7% Similarity=-0.032 Sum_probs=92.9
Q ss_pred HHHHHHhcCChh---HHHHHHHHHHHhc----CcccHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 025612 66 AVHAMKLAKSSS---KLEEGFQSRICRL----LKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILML 138 (250)
Q Consensus 66 ll~~~~~~~~~~---~a~~l~~~m~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~ 138 (250)
++...|..|..+ +|.+.|++....+ ++|+....+-+.+- +.-++-..+++...+ ..+..-=+.++.++
T Consensus 754 il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~Vyc~~~-~~~~~~~~l~~~y~~----s~~~~ek~~ll~aL 828 (967)
T 3se6_A 754 LLKLACDLNHAPCIQKAAELFSQWMESSGKLNIPTDVLKIVYSVGA-QTTAGWNYLLEQYEL----SMSSAEQNKILYAL 828 (967)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHHHT-TSHHHHHHHHHHHHH----CSCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccCChhhhhHhHhhhh-ccHHHHHHHHHHHhc----cCCHHHHHHHHHHh
Confidence 466778888865 7888888876532 56777765555443 334444455555543 24556678999999
Q ss_pred HcCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCC-hHHHHHHHH----HHHHCCCCCCHHHHHHHHHHHHhc-
Q 025612 139 GKNKQIAMAEELFCELKKEG-LDPDTRVYTEMIGVYLQVGM-IDKAMETYE----TMKASGCTPHKLTFTILIRNLENA- 211 (250)
Q Consensus 139 ~~~~~~~~A~~~~~~m~~~g-~~p~~~ty~~li~~~~~~g~-~~~a~~~~~----~m~~~g~~p~~~ty~~li~~~~~~- 211 (250)
+...+.+...++++...... +++. ... .++.+.+.... .+.|++.+. .+.+. +.++...+..+|.+.++.
T Consensus 829 ~ct~d~~ll~~~L~~~l~~~~i~~q-d~~-~~~~~v~~n~~g~~~~w~f~~~nw~~i~~~-~~~~~~~~~~~i~~~~~~~ 905 (967)
T 3se6_A 829 STSKHQEKLLKLIELGMEGKVIKTQ-NLA-ALLHAIARRPKGQQLAWDFVRENWTHLLKK-FDLGSYDIRMIISGTTAHF 905 (967)
T ss_dssp TTCCCHHHHHHHHHHHHHCSSSCGG-GHH-HHHHHHHHSTTHHHHHHHHHHHHHHHHHHH-SCTTSHHHHHHHHTTTTTC
T ss_pred cCCCCHHHHHHHHHHHhCcCcCcHh-HHH-HHHHHHHcChhHHHHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHHHhcc
Confidence 99999999999999877654 4433 222 33444444332 344555553 23332 234446777888766543
Q ss_pred ---CCHHHHHHHHHHHHhcc
Q 025612 212 ---GEEELVAAVRRDCIQYV 228 (250)
Q Consensus 212 ---g~~~~a~~~~~~m~~~g 228 (250)
.+.++.+++|+.-...|
T Consensus 906 ~t~~~l~~~~~f~~~~~~~~ 925 (967)
T 3se6_A 906 SSKDKLQEVKLFFESLEAQG 925 (967)
T ss_dssp CSHHHHHHHHHHHHHSCSSS
T ss_pred CCHHHHHHHHHHHHhCCccc
Confidence 34555666666543333
No 252
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.02 E-value=14 Score=31.17 Aligned_cols=96 Identities=8% Similarity=-0.025 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCCHHH---
Q 025612 129 SLYSDMILMLGKNKQIAMAEELFCELKKE--GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA---SGCTPHKLT--- 200 (250)
Q Consensus 129 ~~y~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~t--- 200 (250)
.++..+-+.|.+.|++++|.++|.++... +..--...|-.+|+.+...+++..+...+.+... .+-.|+...
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 46778889999999999999999999875 3333356677888999999999999999988754 333333321
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 201 -FTILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 201 -y~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
|..++ +...+++..|.+.|-+...
T Consensus 212 ~~~gl~--~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIH--CLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHG--GGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHhChHHHHHHHHHHHhc
Confidence 22222 2356789998888877654
No 253
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=77.48 E-value=47 Score=31.05 Aligned_cols=151 Identities=9% Similarity=-0.023 Sum_probs=92.3
Q ss_pred HHHHHHhcCChh---HHHHHHHHHHHh----cCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 025612 66 AVHAMKLAKSSS---KLEEGFQSRICR----LLKADLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILML 138 (250)
Q Consensus 66 ll~~~~~~~~~~---~a~~l~~~m~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~ 138 (250)
++...|..|..+ +|.+.|++.... .++|+....+-+.+- |.-++-..+++...+ ..+..--+.++.++
T Consensus 686 ~~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~~lr~~vy~~~~-g~~~~~~~l~~~y~~----~~~~~ek~~ll~aL 760 (897)
T 2xdt_A 686 LLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGA-QSTEGWDFLYSKYQF----SLSSTEKSQIEFAL 760 (897)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHHHT-TSHHHHHHHHHHHTT----CCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCCCcCCCCcchhhhEEEEec-CCHHHHHHHHHHHHc----cCCHHHHHHHHHHh
Confidence 477778888876 677788877654 356777755555544 766655556666543 33566678899999
Q ss_pred HcCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc-CChHHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHhc-
Q 025612 139 GKNKQIAMAEELFCELKKE-GLDPDTRVYTEMIGVYLQV-GMIDKAMETYET----MKASGCTPHKLTFTILIRNLENA- 211 (250)
Q Consensus 139 ~~~~~~~~A~~~~~~m~~~-g~~p~~~ty~~li~~~~~~-g~~~~a~~~~~~----m~~~g~~p~~~ty~~li~~~~~~- 211 (250)
+...+.+...++++..... .+++.. ...++.+.+.. -..+.|++.+.+ +.+. ..++..++..+|...+..
T Consensus 761 ~c~~~~~~l~~~L~~~~~~~~i~~qd--~~~~~~~v~~n~~g~~~~~~~~~~n~~~i~~~-~~~~~~~~~~~i~~~~~~~ 837 (897)
T 2xdt_A 761 CRTQNKEKLQWLLDESFKGDKIKTQE--FPQILTLIGRNPVGYPLAWQFLRKNWNKLVQK-FELGSSSIAHMVMGTTNQF 837 (897)
T ss_dssp TTCCCHHHHHHHHHHHHHCSSSCGGG--HHHHHHHHHTSTTTHHHHHHHHHHTHHHHHHH-HCTTCHHHHHHHHHTTTTC
T ss_pred ccCCCHHHHHHHHHHHhCCCCCcHHH--HHHHHHHHHcChhhHHHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHHHhcc
Confidence 9999999999999987764 344432 22344444432 223455555432 3222 122345677777776543
Q ss_pred ---CCHHHHHHHHHHH
Q 025612 212 ---GEEELVAAVRRDC 224 (250)
Q Consensus 212 ---g~~~~a~~~~~~m 224 (250)
.+.++.++++...
T Consensus 838 ~t~~~~~~~~~f~~~~ 853 (897)
T 2xdt_A 838 STRTRLEEVKGFFSSL 853 (897)
T ss_dssp CSHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhC
Confidence 3455666666654
No 254
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=75.04 E-value=13 Score=29.89 Aligned_cols=107 Identities=13% Similarity=0.098 Sum_probs=68.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 025612 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM--IDKAMETYETMKASGCTPHKLTFTILIRN 207 (250)
Q Consensus 130 ~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~ty~~li~~ 207 (250)
-.+.+|.-|...|+.++|.++++++....+. ..+.+.++..+.-+.++ .+.+..++..+.+.|+-+.......+-+.
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~v 246 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERI 246 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3578889999999999999999998642222 23445555555555433 45677888888887777665555555555
Q ss_pred HHhcCCH--------HHHHHHHHHHHhccCCchHHHHH
Q 025612 208 LENAGEE--------ELVAAVRRDCIQYVEFPERFLEE 237 (250)
Q Consensus 208 ~~~~g~~--------~~a~~~~~~m~~~g~~pd~~~~~ 237 (250)
+....++ +...+++..+...|+.|..+...
T Consensus 247 l~~l~Dl~lDiP~A~~~la~~v~~ai~~g~l~~~~~~~ 284 (307)
T 2zu6_B 247 YNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDL 284 (307)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCHHHHHT
T ss_pred HHhccHhhcccccHHHHHHHHHHHHHHCCCCCHHHHHh
Confidence 5444332 23455556666778877666554
No 255
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=74.85 E-value=19 Score=25.28 Aligned_cols=53 Identities=6% Similarity=-0.075 Sum_probs=45.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-ccCC
Q 025612 178 MIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ-YVEF 230 (250)
Q Consensus 178 ~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~-~g~~ 230 (250)
|.-+..+-++.+....+.|++......+++|-|.+++-.|.++|+-.+. .|-.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~ 121 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH 121 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc
Confidence 4446777777888888999999999999999999999999999999884 3444
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.22 E-value=41 Score=28.28 Aligned_cols=94 Identities=7% Similarity=-0.057 Sum_probs=63.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCccc----HH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 025612 63 AIQAVHAMKLAKSSSKLEEGFQSRICRLLKAD----LL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMIL- 136 (250)
Q Consensus 63 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~----~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~- 136 (250)
...+.+-+.+.|+.+.|.+.+.++...-..+. .. .+|..+...+++..+............-.++...-+.+=.
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~ 213 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTY 213 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH
Confidence 34467778899999999999999976443332 22 6888999999999999999887532222233222222111
Q ss_pred ---HHHcCCCHHHHHHHHHHHHh
Q 025612 137 ---MLGKNKQIAMAEELFCELKK 156 (250)
Q Consensus 137 ---~~~~~~~~~~A~~~~~~m~~ 156 (250)
.+...+++..|-..|-+...
T Consensus 214 ~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 214 YGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHHHhc
Confidence 12356889998888877654
No 257
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=71.40 E-value=32 Score=26.39 Aligned_cols=91 Identities=7% Similarity=0.091 Sum_probs=45.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCCCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 025612 98 TLTELRRQNELDLALKVFNFVRKE-VWYKP----DLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGV 172 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~-~g~~~----~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~ 172 (250)
-|+.+....++++|.++.++..+. .++++ +...-...|+.-.....-.-+..+.+++.. .++...--..+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 577777888888888887776431 11111 001112222222222233333444444422 3344445555566
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 025612 173 YLQVGMIDKAMETYETMKA 191 (250)
Q Consensus 173 ~~~~g~~~~a~~~~~~m~~ 191 (250)
+.+.|..++|.++|=+.+.
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 6666666666666655544
No 258
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=70.67 E-value=43 Score=27.45 Aligned_cols=122 Identities=7% Similarity=-0.015 Sum_probs=88.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-ChHH
Q 025612 105 QNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNK-QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV-G-MIDK 181 (250)
Q Consensus 105 ~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~-g-~~~~ 181 (250)
.+..++|+++++.+.+. + +-+...||.-=..+...| .+++++++++.+.... +-+...|+.--..+.+. + +.++
T Consensus 67 ~e~se~AL~lt~~~L~~-n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 67 EEKSERALELTEIIVRM-N-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TCCSHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred CCCCHHHHHHHHHHHHh-C-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 34456899999998752 2 224666887777777778 5999999999998753 33667787777666666 7 8999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhccCC
Q 025612 182 AMETYETMKASGCTPHKLTFTILIRNLENAGEEE--------LVAAVRRDCIQYVEF 230 (250)
Q Consensus 182 a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~ 230 (250)
++++++.+.+..- -|...|+.---.+.+.|+++ ++.+.++.+.+....
T Consensus 144 EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~ 199 (349)
T 3q7a_A 144 EIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR 199 (349)
T ss_dssp HHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC
Confidence 9999999987542 26777776666666555555 788888888876655
No 259
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=70.65 E-value=20 Score=23.71 Aligned_cols=76 Identities=11% Similarity=0.068 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 025612 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMI--LMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAME 184 (250)
Q Consensus 107 ~~~~a~~~~~~m~~~~g~~~~~~~y~~li--~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 184 (250)
..++|..+-+.+.. . ++ .-.-+|| ..+.+.|++++|..+.+.+. -||...|-+|-. .+.|..+++..
T Consensus 21 ~HqEA~tIAdwL~~-~---~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~ 89 (115)
T 2uwj_G 21 CHEEALCIAEWLER-L---GQ-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDR 89 (115)
T ss_dssp CHHHHHHHHHHHHH-T---TC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHh-C---Cc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHH
Confidence 45556555555532 2 22 2222333 33455566666655443332 456655555432 35555555555
Q ss_pred HHHHHHHCC
Q 025612 185 TYETMKASG 193 (250)
Q Consensus 185 ~~~~m~~~g 193 (250)
-+.++...|
T Consensus 90 rL~~la~sg 98 (115)
T 2uwj_G 90 RLAGLGGSS 98 (115)
T ss_dssp HHHHHHTCS
T ss_pred HHHHHHhCC
Confidence 555555444
No 260
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=70.24 E-value=21 Score=23.68 Aligned_cols=77 Identities=13% Similarity=0.067 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 025612 106 NELDLALKVFNFVRKEVWYKPDLSLYSDMI--LMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAM 183 (250)
Q Consensus 106 ~~~~~a~~~~~~m~~~~g~~~~~~~y~~li--~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~ 183 (250)
...++|..+-+.+.. . ++ .-.-+|| ..+.+.|++++|..+.+.+. -||...|-+|-. .+.|..+++.
T Consensus 21 H~HqEA~tIAdwL~~-~---~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le 89 (116)
T 2p58_C 21 HYHEEANCIAEWLHL-K---GE-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALE 89 (116)
T ss_dssp TCHHHHHHHHHHHHH-T---TC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHH
T ss_pred hHHHHHHHHHHHHHh-C---Cc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHH
Confidence 345666666666642 2 22 2222333 33556666666665554432 466666655533 3556555555
Q ss_pred HHHHHHHHCC
Q 025612 184 ETYETMKASG 193 (250)
Q Consensus 184 ~~~~~m~~~g 193 (250)
.-+.++...|
T Consensus 90 ~rL~~la~sg 99 (116)
T 2p58_C 90 SRLNRLARSQ 99 (116)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHhCC
Confidence 5555555544
No 261
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=69.60 E-value=27 Score=24.79 Aligned_cols=107 Identities=12% Similarity=0.090 Sum_probs=61.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 025612 130 LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM--IDKAMETYETMKASGCTPHKLTFTILIRN 207 (250)
Q Consensus 130 ~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~ty~~li~~ 207 (250)
..+.+|.-|...|+.++|...++++....+ -..+.+.++..++-+.++ .+.+..++..+...|+-+.......+-+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~v 89 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 89 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence 356777788778888888888888753211 123445555555555332 34567777777777765555443444444
Q ss_pred HHhcCC--------HHHHHHHHHHHHhccCCchHHHHH
Q 025612 208 LENAGE--------EELVAAVRRDCIQYVEFPERFLEE 237 (250)
Q Consensus 208 ~~~~g~--------~~~a~~~~~~m~~~g~~pd~~~~~ 237 (250)
+....+ ++...+++..+...|+.|..++..
T Consensus 90 l~~ldDl~lDiP~A~~~la~~v~~ai~~g~l~~~~~~~ 127 (152)
T 2ion_A 90 YNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDL 127 (152)
T ss_dssp HHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHT
T ss_pred HHhChHhccCccchHHHHHHHHHHHHHCCCCCHHHHHh
Confidence 433333 223445555566667777666654
No 262
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=68.56 E-value=27 Score=24.32 Aligned_cols=72 Identities=10% Similarity=0.065 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHcCCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 025612 125 KPDLSLYSDMILMLGKNKQI---AMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK 198 (250)
Q Consensus 125 ~~~~~~y~~li~~~~~~~~~---~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 198 (250)
.|+..|==..-.++++..+. .+++.++++....+-.-.....=-|--|+.+.|++++|.+..+.+.+ +.|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 34444444444455555443 34566666665543111122233344566677777777777776666 34544
No 263
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=67.21 E-value=31 Score=24.56 Aligned_cols=57 Identities=23% Similarity=0.268 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCchHHHH
Q 025612 180 DKAMETYETMKASGCTPHK-LTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLE 236 (250)
Q Consensus 180 ~~a~~~~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~ 236 (250)
++..++|..|...||--.. .-|...-..+-..|++.+|.++|+.-.+.+-.|-..+.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~ 139 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQ 139 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHH
Confidence 4477888888877665433 44666666667778888888888888887777754443
No 264
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=67.13 E-value=17 Score=25.45 Aligned_cols=58 Identities=5% Similarity=-0.045 Sum_probs=35.8
Q ss_pred HHHHhcCcccHH--HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 025612 85 SRICRLLKADLL--DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ 143 (250)
Q Consensus 85 ~m~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~ 143 (250)
.+.+.|+.++.. .++..+...+..-.|.++++.+.+ .+...+..|.-.-|+.+...|-
T Consensus 12 ~l~~~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~-~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQRHAILEYLVNSMAHPTADDIYKALEG-KFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGG-GCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHH-hCCCCChhhHHHHHHHHHHCCC
Confidence 345566665554 677777766666677777777753 5555566565555555555554
No 265
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=67.11 E-value=24 Score=23.31 Aligned_cols=89 Identities=11% Similarity=-0.059 Sum_probs=63.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 025612 141 NKQIAMAEELFCELKKEGLDPDTRVYTEM--IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218 (250)
Q Consensus 141 ~~~~~~A~~~~~~m~~~g~~p~~~ty~~l--i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~ 218 (250)
....++|.-+-+.+...|. .---+| +..+...|++++|..+.+.+ ..||...|-.|-. .+.|--+.++
T Consensus 19 ~H~HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le 88 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ----DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALD 88 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHH
Confidence 3467888888888877643 223333 45677899999999766544 3799999877754 5888999999
Q ss_pred HHHHHHHhccCCch-HHHHHHH
Q 025612 219 AVRRDCIQYVEFPE-RFLEEVY 239 (250)
Q Consensus 219 ~~~~~m~~~g~~pd-~~~~~~~ 239 (250)
..+..+...|-+-. .|-..++
T Consensus 89 ~rL~~la~sg~p~~q~Fa~g~r 110 (115)
T 2uwj_G 89 RRLAGLGGSSDPALADFAAGMR 110 (115)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHH
Confidence 99989988887643 4433333
No 266
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=66.93 E-value=24 Score=25.48 Aligned_cols=51 Identities=14% Similarity=0.227 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 025612 147 AEELFCELKKEGLDPD-TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH 197 (250)
Q Consensus 147 A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 197 (250)
+.++|..|..+|+--. +.-|-..-..+-..|++.+|.+||+.=.+.+-+|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 5556666666655433 33455555555566666666666666666665653
No 267
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=66.80 E-value=17 Score=25.74 Aligned_cols=60 Identities=17% Similarity=0.056 Sum_probs=38.2
Q ss_pred HHHHHhcCcccHH--HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH
Q 025612 84 QSRICRLLKADLL--DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQI 144 (250)
Q Consensus 84 ~~m~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~ 144 (250)
+.+.+.|+.++.. .++..+...+..-.|.++++.+.+ .+...+..|.-.-|+.+...|-+
T Consensus 16 ~~l~~~g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~-~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQ-KDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHH-HSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHH-hCCCCCHhhHHHHHHHHHHCCcE
Confidence 3355667666555 688888777777778888888864 45555666655556666655543
No 268
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=66.54 E-value=25 Score=23.28 Aligned_cols=89 Identities=11% Similarity=0.062 Sum_probs=63.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 025612 141 NKQIAMAEELFCELKKEGLDPDTRVYTEM--IGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVA 218 (250)
Q Consensus 141 ~~~~~~A~~~~~~m~~~g~~p~~~ty~~l--i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~ 218 (250)
....++|.-+-+.+...|. .---+| +..+...|++++|..+.+.+- .||...|-.|-. .+.|--+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le 89 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE----EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALE 89 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHH
Confidence 3467888888888877643 223333 456778999999998766544 799999887754 4778889999
Q ss_pred HHHHHHHhccCCch-HHHHHHH
Q 025612 219 AVRRDCIQYVEFPE-RFLEEVY 239 (250)
Q Consensus 219 ~~~~~m~~~g~~pd-~~~~~~~ 239 (250)
..+..+...|-+-. .|-..++
T Consensus 90 ~rL~~la~sg~p~~q~Fa~g~r 111 (116)
T 2p58_C 90 SRLNRLARSQDPRIQTFVNGMR 111 (116)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHH
Confidence 98888888887643 4433333
No 269
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=64.69 E-value=13 Score=26.87 Aligned_cols=23 Identities=4% Similarity=0.093 Sum_probs=17.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 025612 97 DTLTELRRQNELDLALKVFNFVR 119 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~ 119 (250)
++|+.|...++.++|...++++.
T Consensus 15 ~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 15 PIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC
Confidence 57777877888888887777773
No 270
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=64.06 E-value=9 Score=27.75 Aligned_cols=14 Identities=7% Similarity=0.218 Sum_probs=5.9
Q ss_pred HHHHHHHHHCCCCC
Q 025612 183 METYETMKASGCTP 196 (250)
Q Consensus 183 ~~~~~~m~~~g~~p 196 (250)
.++.+.+.+.|..|
T Consensus 158 ~~~v~~Ll~~ga~~ 171 (201)
T 3hra_A 158 QDIVKLLMENGADQ 171 (201)
T ss_dssp HHHHHHHHHTTCCT
T ss_pred HHHHHHHHHCCCCC
Confidence 33444444444433
No 271
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=62.79 E-value=34 Score=23.44 Aligned_cols=64 Identities=14% Similarity=0.093 Sum_probs=41.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC--HHHHHHHHHHHHhCCCCCC
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ--IAMAEELFCELKKEGLDPD 162 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p~ 162 (250)
.+|..|...|+.++|.+.++++. ... --...++..+..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL~-~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKELE-VPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT-CGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC-CCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 58888888899999998888883 111 1124555566666666542 4567778888777654433
No 272
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=61.19 E-value=16 Score=25.30 Aligned_cols=57 Identities=14% Similarity=-0.014 Sum_probs=31.9
Q ss_pred HHHhcCcccHH--HHHHHHHHcC-CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 025612 86 RICRLLKADLL--DTLTELRRQN-ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ 143 (250)
Q Consensus 86 m~~~~~~~~~~--~ll~~~~~~~-~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~ 143 (250)
+.+.|++++.. .++..+...+ ..-.|.++++.+.+ .+...+..|.-.-|+.+...|-
T Consensus 9 l~~~g~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~-~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALME-AGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHh-hCCCCCHHHHHHHHHHHHHCCc
Confidence 44556555444 5666666655 55567777777754 4445555555444555554443
No 273
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=60.05 E-value=46 Score=24.09 Aligned_cols=58 Identities=10% Similarity=-0.004 Sum_probs=38.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPD-------LSLYSDMILMLGKNKQIAMAEELFCEL 154 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~-------~~~y~~li~~~~~~~~~~~A~~~~~~m 154 (250)
.-++.+...+.++.|+-+.+.+....+-.|+ ..++..+-+++-..|++..|...|++.
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4667777888888888777765322222333 234455567777888888888888774
No 274
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=59.00 E-value=40 Score=26.56 Aligned_cols=116 Identities=16% Similarity=0.096 Sum_probs=76.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 025612 99 LTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKE--GLDPDTRVYTEMIGVYLQV 176 (250)
Q Consensus 99 l~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~ty~~li~~~~~~ 176 (250)
+..+.+.|.+++|+.....-.+.. +.|...=..|+..+|-.|+++.|.+-++...+. ...|...+|-.+|.+=.
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~-- 79 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQ-- 79 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH--
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHH--
Confidence 345678899999998888766532 446777778899999999999999888877653 22333445555554311
Q ss_pred CChHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 025612 177 GMIDKAMETYETMKASGCT-----PHKLTFTILIRNLE--NAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 177 g~~~~a~~~~~~m~~~g~~-----p~~~ty~~li~~~~--~~g~~~~a~~~~~~m~~ 226 (250)
.=.++...+-. ....-...|+++.. ..|+.++|.++-....+
T Consensus 80 --------~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 80 --------ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp --------HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --------HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 11223332222 23345667777776 45999999999888754
No 275
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=58.33 E-value=29 Score=21.24 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=29.1
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 025612 153 ELKKEGLDPDTRVYTEMIGVYLQVG-MIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212 (250)
Q Consensus 153 ~m~~~g~~p~~~ty~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 212 (250)
.|.+.|++.+..-. .++..+...+ ..-.+.++++.+.+.+...+..|..-.++.+.+.|
T Consensus 7 ~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34455655554442 3334444333 34455566666655544445555545555554444
No 276
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=57.96 E-value=13 Score=27.17 Aligned_cols=160 Identities=12% Similarity=0.049 Sum_probs=92.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCcc-c-HH--HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHH
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLKA-D-LL--DTLTELRRQNELDLALKVFNFVRKEVWYKPDLS---LYSDMILMLG 139 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~~-~-~~--~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~---~y~~li~~~~ 139 (250)
+...++.|+.+....++.. +... + .. +.|...+..|+.+.-.++.+.+.+ .|..++.. -++.|.-++.
T Consensus 10 l~~Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~-~Gadvn~~d~~g~TpLh~a~~ 84 (186)
T 3t8k_A 10 VSAAAMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN-KGADIKSRTKEGTTLFFPLFQ 84 (186)
T ss_dssp HHHHHHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHH-TTCCSSCCCTTCCCTHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHH
Confidence 4445677888877666653 3221 2 21 566666777877766677777764 77666532 2334443333
Q ss_pred c-CCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCh-HHHHHHHHHHHH-CCCCCCHHHH--HHHHHHHHhc
Q 025612 140 K-NKQIAMAEELFCELKKEGLDPDTRV---YTEMIGVYLQVGMI-DKAMETYETMKA-SGCTPHKLTF--TILIRNLENA 211 (250)
Q Consensus 140 ~-~~~~~~A~~~~~~m~~~g~~p~~~t---y~~li~~~~~~g~~-~~a~~~~~~m~~-~g~~p~~~ty--~~li~~~~~~ 211 (250)
. ..+.....++.+.+.+.|..+|... .++.+...+..|.. ..-..+++.+.+ .|..++.... .+-+....+.
T Consensus 85 ~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~ 164 (186)
T 3t8k_A 85 GGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRC 164 (186)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTT
T ss_pred cCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHc
Confidence 2 3345566778888888888776543 21233322333433 345567777777 7776654221 1344455677
Q ss_pred CCHHHHHHHHHHHHhccCCc
Q 025612 212 GEEELVAAVRRDCIQYVEFP 231 (250)
Q Consensus 212 g~~~~a~~~~~~m~~~g~~p 231 (250)
|+.+.+.-+.+.+++.++..
T Consensus 165 ~~~~~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 165 QKPIALKMMEDYIKKYNLKE 184 (186)
T ss_dssp TCHHHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHHhccc
Confidence 78777766666666666654
No 277
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=57.14 E-value=19 Score=25.39 Aligned_cols=57 Identities=12% Similarity=-0.003 Sum_probs=33.3
Q ss_pred HHHhcCcccHH--HHHHHHHHcC-CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 025612 86 RICRLLKADLL--DTLTELRRQN-ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ 143 (250)
Q Consensus 86 m~~~~~~~~~~--~ll~~~~~~~-~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~ 143 (250)
+.+.|+.++.. .++..+...+ ..-.|.++++.+.+ .+...+..|.-.-|+.+...|-
T Consensus 8 l~~~g~r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~-~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 8 LKDAGLKVTLPRLKILEVLQQPECQHISAEELYKKLID-LGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHTTCCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-hCCCCCHHHHHHHHHHHHHCCc
Confidence 44566655544 5666666555 55567777777754 4545555555555555555554
No 278
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=56.39 E-value=17 Score=25.53 Aligned_cols=55 Identities=13% Similarity=-0.037 Sum_probs=30.8
Q ss_pred HHHhcCcccHH--HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 025612 86 RICRLLKADLL--DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNK 142 (250)
Q Consensus 86 m~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~ 142 (250)
+.+.|++++.. .+++.+...+ .-.|.++++.+.+ .+...+..|.-.-|+.+...|
T Consensus 10 L~~~g~r~T~qR~~Il~~l~~~~-h~ta~ei~~~l~~-~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQRQLVLEAVDTLE-HATPDDILGEVRK-TASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHHHHHHHHHHHHHS-SBCHHHHHHHHHT-TCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHHHHHHHHHHhcC-CCCHHHHHHHHHh-hCCCCCHhHHHHHHHHHHHCC
Confidence 44556655544 5666666655 5567777777753 454555555444445554444
No 279
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=55.56 E-value=63 Score=24.20 Aligned_cols=75 Identities=16% Similarity=0.224 Sum_probs=52.8
Q ss_pred CCCCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 025612 123 WYKPDLSLYSDMILMLGK--NKQIAMAEELFCELKKEGLDPD-TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH 197 (250)
Q Consensus 123 g~~~~~~~y~~li~~~~~--~~~~~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 197 (250)
.+.-|..-...-|..--. +++..++.++|..|..+|+--. +.-|-..-..+-..|++.+|.++|+.=.+.+-+|-
T Consensus 72 rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 72 TYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp GGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 344564443333333222 5557788999999988877554 45677777888888999999999998888888883
No 280
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=55.37 E-value=28 Score=24.96 Aligned_cols=66 Identities=12% Similarity=0.037 Sum_probs=40.9
Q ss_pred HHHHHHHH-HHHhcCcccHH--HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCCH
Q 025612 78 KLEEGFQS-RICRLLKADLL--DTLTELRRQNELDLALKVFNFVRKEV--WYKPDLSLYSDMILMLGKNKQI 144 (250)
Q Consensus 78 ~a~~l~~~-m~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~--g~~~~~~~y~~li~~~~~~~~~ 144 (250)
.+.+-+.+ +.+.|++.+.. .+++.+...+..-.|.++++.+.+ . +...+..|.-.-|+.+...|-+
T Consensus 15 ~~~~~~~~~L~~~g~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~-~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 15 VLLERFKKILRQGGLKYTKQREVLLKTLYHSDTHYTPESLYMEIKQ-AEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHH-HCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 34444443 34567666555 677777777777778888888864 4 4455665555555666665543
No 281
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=54.99 E-value=83 Score=25.45 Aligned_cols=129 Identities=11% Similarity=0.015 Sum_probs=90.7
Q ss_pred HHHHHHcCCHH-HHHHHHHHHHHhCCCCCC-HHHHHHH---HHHHHcCC-------CHHHHHHHHHHHHhCCCCCCHHHH
Q 025612 99 LTELRRQNELD-LALKVFNFVRKEVWYKPD-LSLYSDM---ILMLGKNK-------QIAMAEELFCELKKEGLDPDTRVY 166 (250)
Q Consensus 99 l~~~~~~~~~~-~a~~~~~~m~~~~g~~~~-~~~y~~l---i~~~~~~~-------~~~~A~~~~~~m~~~g~~p~~~ty 166 (250)
+....+.|.++ +|+++++.+.. +.|+ ...||.- +....+.. .+++++.+++.+.... +-+..+|
T Consensus 36 ~~~~~~~~e~s~eaL~~t~~~L~---~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW 111 (331)
T 3dss_A 36 VFQKRQAGELDESVLELTSQILG---ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTW 111 (331)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHH---HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHH
Confidence 33444556654 79999999874 3444 4556533 33333321 1678889998887642 3367778
Q ss_pred HHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhccCCch
Q 025612 167 TEMIGVYLQVG--MIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE-EELVAAVRRDCIQYVEFPE 232 (250)
Q Consensus 167 ~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~-~~~a~~~~~~m~~~g~~pd 232 (250)
+.=-..+.+.| .+++++.+++.+.+..- -|...|+.---.+...|+ ++++.+.+..+.+......
T Consensus 112 ~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~ 179 (331)
T 3dss_A 112 HHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY 179 (331)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCH
T ss_pred HHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCH
Confidence 87777777777 48999999999988643 377888888888888888 6899999999988776633
No 282
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=54.70 E-value=19 Score=26.69 Aligned_cols=17 Identities=12% Similarity=0.153 Sum_probs=7.9
Q ss_pred HHHHhcCChhHHHHHHH
Q 025612 68 HAMKLAKSSSKLEEGFQ 84 (250)
Q Consensus 68 ~~~~~~~~~~~a~~l~~ 84 (250)
...+..|+.+.+..++.
T Consensus 11 ~~A~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 11 CNLAYSGKLDELKERIL 27 (231)
T ss_dssp HHHHHHTCHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHH
Confidence 33444555554444444
No 283
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=54.66 E-value=46 Score=25.35 Aligned_cols=53 Identities=11% Similarity=0.109 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCch
Q 025612 180 DKAMETYETMKASGCTPHK-LTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232 (250)
Q Consensus 180 ~~a~~~~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd 232 (250)
++..++|..|...||--.. .-|...-..+-..|++.+|.+||+.-.+++-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3555666666666554332 3344555555556666666666666666665553
No 284
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=54.54 E-value=35 Score=25.96 Aligned_cols=42 Identities=7% Similarity=0.016 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhcCcccHH----------HHHHHHHHcCCHHHHHHHHHHHH
Q 025612 78 KLEEGFQSRICRLLKADLL----------DTLTELRRQNELDLALKVFNFVR 119 (250)
Q Consensus 78 ~a~~l~~~m~~~~~~~~~~----------~ll~~~~~~~~~~~a~~~~~~m~ 119 (250)
-|+.+|+.+.+.-..++.. ..+-.|.+.|.+++|.++++...
T Consensus 90 SAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 90 SAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 5777777766544322211 35566777777877777777764
No 285
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=54.35 E-value=42 Score=21.90 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH-HHHH----HHCCCCCCHHHHHHH
Q 025612 147 AEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET-YETM----KASGCTPHKLTFTIL 204 (250)
Q Consensus 147 A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~-~~~m----~~~g~~p~~~ty~~l 204 (250)
|.++.+++..-|+.|+..+..-++.-|...+- + +.++ -++| ...|..|+..+.+.+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 45566666666777776666666666666553 2 2221 1122 234666666655543
No 286
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=53.30 E-value=40 Score=26.59 Aligned_cols=115 Identities=10% Similarity=0.013 Sum_probs=72.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhc-CcccHH-HHHHHHHHcCCHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHcCCC
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRL-LKADLL-DTLTELRRQNELDLALKVFNFVRKE-VWYKPDLSLYSDMILMLGKNKQ 143 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~-~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~-~g~~~~~~~y~~li~~~~~~~~ 143 (250)
+..+.+.|+++++++....-++.. ...+.. .++..+|-.|+++.|.+-++...+. ....|...+|-.+|++
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------ 77 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------ 77 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH------
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH------
Confidence 445677899999998888766543 223333 6999999999999999888887542 1112224455555543
Q ss_pred HHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHh--cCChHHHHHHHHHHHH
Q 025612 144 IAMAEELFCELKKEGLDP-----DTRVYTEMIGVYLQ--VGMIDKAMETYETMKA 191 (250)
Q Consensus 144 ~~~A~~~~~~m~~~g~~p-----~~~ty~~li~~~~~--~g~~~~a~~~~~~m~~ 191 (250)
+..=.+....+-.| ...-...|+.+... .|+.++|.++=.+..+
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 22223333333333 23345555665554 6999999988877654
No 287
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=52.50 E-value=58 Score=22.92 Aligned_cols=71 Identities=11% Similarity=0.081 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHcCCCH---HHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 025612 125 KPDLSLYSDMILMLGKNKQI---AMAEELFCELKKEGLDPDTRV-YTEMIGVYLQVGMIDKAMETYETMKASGCTPHK 198 (250)
Q Consensus 125 ~~~~~~y~~li~~~~~~~~~---~~A~~~~~~m~~~g~~p~~~t-y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 198 (250)
.|+..+-=..-.++++..+. .+++.+++++...+-. +..- .=-|--+|.+.|++++|.++.+.+.+ +.|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~-~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS-THHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc-chhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 34444444444555555443 3455555555443211 1111 11223455666666666666666665 34543
No 288
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=52.30 E-value=45 Score=27.49 Aligned_cols=75 Identities=23% Similarity=0.280 Sum_probs=47.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPD----LSLYSDMILMLGKNKQ-IAMAEELFCELKKEGLDPDTRVYTEMIG 171 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~----~~~y~~li~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~ty~~li~ 171 (250)
++|..|...|++++|.+.++++. .|+ .+.+..+..++-+... -+.+-.++..+...|+-+.......+..
T Consensus 17 ~ii~EY~~~~D~~Ea~~~l~eL~-----~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~ 91 (364)
T 3l6a_A 17 TVVTEYLNSGNANEAVNGVREMR-----APKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLN 91 (364)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT-----CCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHhC-----CchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 69999999999999999999983 243 3445554444443321 3456777888887766555444444444
Q ss_pred HHHhc
Q 025612 172 VYLQV 176 (250)
Q Consensus 172 ~~~~~ 176 (250)
.+-..
T Consensus 92 lle~l 96 (364)
T 3l6a_A 92 VLDQC 96 (364)
T ss_dssp HHHTH
T ss_pred HHhhC
Confidence 44333
No 289
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=50.82 E-value=21 Score=20.07 Aligned_cols=29 Identities=10% Similarity=0.032 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHhccCCchHHHHHHHHh
Q 025612 213 EEELVAAVRRDCIQYVEFPERFLEEVYQK 241 (250)
Q Consensus 213 ~~~~a~~~~~~m~~~g~~pd~~~~~~~~~ 241 (250)
|+..|.++++.+.+.|-.|...+..+++-
T Consensus 8 Dv~RaiELle~lq~sgevp~~KL~aLq~V 36 (53)
T 1zl8_A 8 DVQRILELMEHVQKTGEVNNAKLASLQQV 36 (53)
T ss_dssp HHHHHHHHHHHHGGGSSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 67788899999988888888777766553
No 290
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=50.62 E-value=76 Score=23.73 Aligned_cols=78 Identities=17% Similarity=0.004 Sum_probs=56.5
Q ss_pred CCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCchHHH
Q 025612 159 LDPDTRVYTEMIGVYLQ--VGMIDKAMETYETMKASGCTPHK-LTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFL 235 (250)
Q Consensus 159 ~~p~~~ty~~li~~~~~--~g~~~~a~~~~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~ 235 (250)
.+-|..--...|..--. .+...+..++|..|...||--.. .-|...-..+-..|++.+|.++|+.-.+.+-.|-..+
T Consensus 73 YkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL 152 (202)
T 3esl_A 73 YRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRL 152 (202)
T ss_dssp GTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred ccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHH
Confidence 34455444444432222 45578999999999988775544 4577777888889999999999999999998886444
Q ss_pred H
Q 025612 236 E 236 (250)
Q Consensus 236 ~ 236 (250)
.
T Consensus 153 ~ 153 (202)
T 3esl_A 153 L 153 (202)
T ss_dssp H
T ss_pred H
Confidence 4
No 291
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=50.34 E-value=58 Score=22.64 Aligned_cols=57 Identities=11% Similarity=0.093 Sum_probs=25.8
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 025612 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212 (250)
Q Consensus 154 m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 212 (250)
+.+.|++++..= ..++..+...+ .-.|.++++.+++.+-..+..|.---|+.+...|
T Consensus 10 L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 444555554432 22223333334 4455666666655554445544433344444433
No 292
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=50.25 E-value=16 Score=25.47 Aligned_cols=56 Identities=11% Similarity=0.010 Sum_probs=29.9
Q ss_pred HHhcCcccHH--HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 025612 87 ICRLLKADLL--DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ 143 (250)
Q Consensus 87 ~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~ 143 (250)
.+.|++++.. .+++.+...+..-.|.++++.+.+ .+...+..|.-.-|+.+...|-
T Consensus 6 r~~g~r~T~qR~~Il~~L~~~~~h~sa~eI~~~l~~-~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 6 PPVKGRATRQRAAVSAALQEVEEFRSAQELHDMLKH-KGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp ----CHHHHHHHHHHHHHTTCSSCEEHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCccCHHHHHHHHHHHhCCCCCCHHHHHHHHHH-hCCCCCHHHHHHHHHHHHHCCC
Confidence 3445544433 566666666556667777777753 4555565555555555555544
No 293
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=49.94 E-value=84 Score=24.03 Aligned_cols=90 Identities=11% Similarity=-0.003 Sum_probs=65.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH--hcCcc-------cHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 025612 63 AIQAVHAMKLAKSSSKLEEGFQSRIC--RLLKA-------DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSD 133 (250)
Q Consensus 63 ~~~ll~~~~~~~~~~~a~~l~~~m~~--~~~~~-------~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~ 133 (250)
...-++.+...+++++|.++.++..+ .+.++ .....+..-.....-.-+..+.+.+. . .++...--.
T Consensus 21 ~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~---~~~~~~~r~ 96 (235)
T 2d2s_A 21 GVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S---SNEIVHLKS 96 (235)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T---CSSHHHHHH
T ss_pred ccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h---cCCHHHHHH
Confidence 44458889999999999999998864 23332 11245555556666666777777773 2 556777788
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHh
Q 025612 134 MILMLGKNKQIAMAEELFCELKK 156 (250)
Q Consensus 134 li~~~~~~~~~~~A~~~~~~m~~ 156 (250)
.+..+.+-|+.++|.++|=+...
T Consensus 97 ~v~~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 97 GTENMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCChhHHHHHHHHHHH
Confidence 88999999999999999977765
No 294
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=49.61 E-value=32 Score=21.06 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=11.7
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 025612 147 AEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177 (250)
Q Consensus 147 A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 177 (250)
+.++++.+.+.+...+..|---.|..+.+.|
T Consensus 36 ~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 36 AEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3334444433333333333333333333333
No 295
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=49.42 E-value=20 Score=26.60 Aligned_cols=125 Identities=10% Similarity=-0.054 Sum_probs=71.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHH
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSL--YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR---VYTEMIG 171 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~--y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~---ty~~li~ 171 (250)
+.|...+..|+.+.+..+++.+.+ .|..++... ..+.+...+..|+.+- ++.+.+.|..++.. -++. +.
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~-l~ 84 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQ-GGRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAGASPMALDRHGQTA-AH 84 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCH-HH
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHh-cCCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCH-HH
Confidence 467777888999988888887753 665555322 2356666777787654 44555567666543 2334 44
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCch
Q 025612 172 VYLQVGMIDKAMETYETMKASGCTPH---KLTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232 (250)
Q Consensus 172 ~~~~~g~~~~a~~~~~~m~~~g~~p~---~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd 232 (250)
..+..|..+-+..+++.-...++.++ ..-.+. +...++.|+.+.+ +.+.+.|..++
T Consensus 85 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~----~~Ll~~g~~~~ 143 (241)
T 1k1a_A 85 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA-LHVAVNTECQETV----QLLLERGADID 143 (241)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCH-HHHHHHHTCHHHH----HHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHcCCCccccccccCcCCCcH-HHHHHHcCCHHHH----HHHHHcCCCcc
Confidence 44567777665555554333222333 333444 4445566666544 44445566544
No 296
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=48.61 E-value=43 Score=26.85 Aligned_cols=93 Identities=12% Similarity=0.063 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhcCcccHH-----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 025612 62 EAIQAVHAMKLAKSSSKLEEGFQSRICRLLKADLL-----DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMIL 136 (250)
Q Consensus 62 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~ 136 (250)
.....+...+..|+.+.+..+++ .|..++.. +.|...+..|+.+-+..+++. |..++...-.+.+.
T Consensus 19 ~g~t~L~~Aa~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-----g~~~~~~~g~t~L~ 89 (364)
T 3ljn_A 19 ENMEKIHVAARKGQTDEVRRLIE----TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV-----GEVHSLWHGQKPIH 89 (364)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHH-----CCCCCCBTTBCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH----cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHC-----CCCccccCCCCHHH
Confidence 44455777778888766655554 46555432 466666777888665555443 22333222334555
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCH
Q 025612 137 MLGKNKQIAMAEELFCELKKEGLDPDT 163 (250)
Q Consensus 137 ~~~~~~~~~~A~~~~~~m~~~g~~p~~ 163 (250)
..+..|+.+-+..+++.-...|..|+.
T Consensus 90 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 116 (364)
T 3ljn_A 90 LAVMANKTDLVVALVEGAKERGQMPES 116 (364)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHcCCHHHHHHHHHhccccCCCHHH
Confidence 566677777777777665544544443
No 297
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=46.37 E-value=23 Score=22.33 Aligned_cols=34 Identities=15% Similarity=0.036 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 025612 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNK 142 (250)
Q Consensus 108 ~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~ 142 (250)
.++|...|..|.++.++.|+ .||...|...+..-
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~-~tWe~~~~~i~~Dp 49 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAF-STWEKELHKIVFDP 49 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSS-SCHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHccCC
Confidence 56777777777777777766 46777776666543
No 298
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=46.11 E-value=17 Score=26.19 Aligned_cols=154 Identities=12% Similarity=0.065 Sum_probs=75.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCcccH---H--HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHH
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLKADL---L--DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSL--YSDMILMLG 139 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~---~--~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~--y~~li~~~~ 139 (250)
+...+..|+.+.+..++..- +..++. . +.+...++.|+.+-+..+++ .|..++... -.+.+...+
T Consensus 9 L~~A~~~g~~~~v~~ll~~~---~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-----~g~~~~~~~~~g~t~l~~A~ 80 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDT---TYQVDEVDTEGNTPLNIAVHNNDIEIAKALID-----RGADINLQNSISDSPYLYAG 80 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCT---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-----TTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHcC---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-----cCCCCCCCCCCCCCHHHHHH
Confidence 45566778877777766532 212221 1 45666677888765554443 344443211 234455666
Q ss_pred cCCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 025612 140 KNKQIAMAEELFCELKKEGLDP---DTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216 (250)
Q Consensus 140 ~~~~~~~A~~~~~~m~~~g~~p---~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 216 (250)
..|+.+-+..+++. .+..+ |..-.+.| ...++.|..+-+..+++.-...--..|..-.+.|..+.........
T Consensus 81 ~~~~~~~~~~Ll~~---~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~ 156 (201)
T 3hra_A 81 AQGRTEILAYMLKH---ATPDLNKHNRYGGNAL-IPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQL 156 (201)
T ss_dssp HTTCHHHHHHHHHH---SCCCTTCCCTTSCCSH-HHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHH
T ss_pred HcCCHHHHHHHHhc---cCcccccccCCCCcHH-HHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhh
Confidence 77887766666543 22222 22222333 3345667765554444332010011233333444444433322333
Q ss_pred HHHHHHHHHhccCCch
Q 025612 217 VAAVRRDCIQYVEFPE 232 (250)
Q Consensus 217 a~~~~~~m~~~g~~pd 232 (250)
-.++.+.+.+.|..++
T Consensus 157 ~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 157 YQDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHCCCCCC
Confidence 3566666777776655
No 299
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=45.99 E-value=55 Score=24.00 Aligned_cols=152 Identities=9% Similarity=0.013 Sum_probs=85.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCcccHH-----HHHHHHHHcCCHHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHH
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLKADLL-----DTLTELRRQNELDLALKVFNFVRKEVW---YKPDLSLYSDMILML 138 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~~g---~~~~~~~y~~li~~~ 138 (250)
+...++.|+.+.+..+++. .|..++.. +.+...+..|+.+-+..+++.-..-.. ...|.. -.+.+...
T Consensus 7 L~~A~~~g~~~~v~~Ll~~---~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~-g~t~L~~A 82 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKF---EGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYE-GQTALHIA 82 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTT---TCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTT-TCCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCC-CcCHHHHH
Confidence 4556677886665555542 24444332 567777788998877777765321000 011112 23445555
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHH----------------HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--H
Q 025612 139 GKNKQIAMAEELFCELKKEGLDPDTR----------------VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL--T 200 (250)
Q Consensus 139 ~~~~~~~~A~~~~~~m~~~g~~p~~~----------------ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t 200 (250)
+..|+.+-+. .+.+.|..++.. -.+.|. ..+..|..+-+ +.+.+.|..++.. .
T Consensus 83 ~~~~~~~~v~----~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~-~A~~~~~~~~v----~~Ll~~ga~~~~~d~~ 153 (232)
T 2rfa_A 83 VINQNVNLVR----ALLARGASVSARATGSVFHYRPHNLIYYGEHPLS-FAACVGSEEIV----RLLIEHGADIRAQDSL 153 (232)
T ss_dssp HHTTCHHHHH----HHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHH-HHHHHTCHHHH----HHHHHTTCCTTCCCTT
T ss_pred HHcCCHHHHH----HHHhCCCCCCcccCCcceeecccccccCCCCHHH-HHHHcCCHHHH----HHHHHCCCCCCCCCCC
Confidence 6677765444 444556655542 233443 33556766544 4445566655432 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCc
Q 025612 201 FTILIRNLENAGEEELVAAVRRDCIQYVEFP 231 (250)
Q Consensus 201 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 231 (250)
-.+-+...+..|+.+.+.++++.+.+.|..+
T Consensus 154 g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 154 GNTVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp SCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred CCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 2244566678889998888888888877643
No 300
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=45.77 E-value=57 Score=21.83 Aligned_cols=75 Identities=17% Similarity=0.166 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 025612 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKK-EGLDPDTRVYTEMIGVYLQVGMIDKAMETY 186 (250)
Q Consensus 108 ~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~-~g~~p~~~ty~~li~~~~~~g~~~~a~~~~ 186 (250)
+++|..-+++..+ . .+|......+|..+-.+ ++.|.++.....+ .|+ +..++.-.+....+.|-+++. +.|
T Consensus 4 ~~~al~~L~e~~~-~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w 75 (119)
T 1wty_A 4 LARAVERLKAALE-R--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFW 75 (119)
T ss_dssp HHHHHHHHHHHHS-S--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHH
T ss_pred HHHHHHHHHHHHh-c--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHH
Confidence 4455555555432 1 34444444554443221 2333333332222 344 344555555555555555444 344
Q ss_pred HHHH
Q 025612 187 ETMK 190 (250)
Q Consensus 187 ~~m~ 190 (250)
..|.
T Consensus 76 ~~m~ 79 (119)
T 1wty_A 76 LEML 79 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 301
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=45.26 E-value=22 Score=28.88 Aligned_cols=90 Identities=16% Similarity=0.109 Sum_probs=53.9
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHh
Q 025612 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL---ENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 150 ~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~---~~~g~~~~a~~~~~~m~~ 226 (250)
+++.+.+.|+.|..+++.-++..|.+.=.++.+.++|+.+...|...-...-.+++..+ .-..+++...++++.+..
T Consensus 215 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~l~~valaiL~~~~~~Ll~~d~~~il~~L~~lp~ 294 (334)
T 2qq8_A 215 LFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDILTKMDFIHMAQFLTRLPE 294 (334)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHSCCT
T ss_pred HHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhCCC
Confidence 55666778899998998888888888778899999999888776321111111222111 122356666655554432
Q ss_pred ccCCchHHHHHHHH
Q 025612 227 YVEFPERFLEEVYQ 240 (250)
Q Consensus 227 ~g~~pd~~~~~~~~ 240 (250)
. +.++.++.....
T Consensus 295 ~-~d~~~l~~~a~~ 307 (334)
T 2qq8_A 295 D-LPAEELFASIAT 307 (334)
T ss_dssp T-CCHHHHHHHHHH
T ss_pred c-CCHHHHHHHHHH
Confidence 2 445555544433
No 302
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=44.90 E-value=26 Score=26.63 Aligned_cols=85 Identities=11% Similarity=0.008 Sum_probs=41.6
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHH
Q 025612 134 MILMLGKNKQIAMAEELFCELKKEGLDPD---TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT--FTILIRNL 208 (250)
Q Consensus 134 li~~~~~~~~~~~A~~~~~~m~~~g~~p~---~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--y~~li~~~ 208 (250)
.+...++.|+.+-+..+++. .|..++ ..-.+.+..+ +..|......++.+.+.+.|..++... -.+.+...
T Consensus 151 ~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A 226 (285)
T 1wdy_A 151 ALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA 226 (285)
T ss_dssp HHHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence 44444555665544433332 143332 2223333333 345555555666777777776554321 22344455
Q ss_pred HhcCCHHHHHHHHH
Q 025612 209 ENAGEEELVAAVRR 222 (250)
Q Consensus 209 ~~~g~~~~a~~~~~ 222 (250)
++.|+.+-+..+++
T Consensus 227 ~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 227 VEKKHLGLVQRLLE 240 (285)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 56677766555554
No 303
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=44.42 E-value=1.3e+02 Score=24.66 Aligned_cols=73 Identities=14% Similarity=0.246 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhccCC-chHHHHH
Q 025612 164 RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE--EELVAAVRRDCIQYVEF-PERFLEE 237 (250)
Q Consensus 164 ~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~--~~~a~~~~~~m~~~g~~-pd~~~~~ 237 (250)
...+.+|.=|...|+.++|.+.++++..-.+.+ ...+..+..++-+.++ .+.+.+++..+...|+. ++.+...
T Consensus 218 kki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~G 293 (358)
T 3eiq_C 218 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 293 (358)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 346888999999999999999999986533322 2345555556655433 46688888888877765 5444443
No 304
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=43.64 E-value=46 Score=26.30 Aligned_cols=145 Identities=6% Similarity=0.040 Sum_probs=76.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCcccHH------HHHHHHHHc--CCHHHHHHHHHHHHHhCCCCCCHH--HHHHHHH
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLKADLL------DTLTELRRQ--NELDLALKVFNFVRKEVWYKPDLS--LYSDMIL 136 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~------~ll~~~~~~--~~~~~a~~~~~~m~~~~g~~~~~~--~y~~li~ 136 (250)
+...+..|+.+-+..++++ .|..++.. .+..++... +..+. +.+.+.+ .|..++.. ...+.+.
T Consensus 172 L~~A~~~g~~~~v~~LL~~---~gad~n~~d~~g~t~l~~~~~~~~~~~~~~---i~~lLl~-~gad~n~~d~~g~t~L~ 244 (337)
T 4g8k_A 172 LMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIHALLSSDDSDVEA---ITHLLLD-HGADVNVRGERGKTPLI 244 (337)
T ss_dssp HHHHHHHTCHHHHHHHHHH---SCCCTTCCCTTSCCHHHHHHHHSCTTTHHH---HHHHHHH-TTCCTTCCCGGGCCHHH
T ss_pred HHHHHHCCCHHHHHHHHhc---cCCCcCccCCCCCcHHHHHHHHcCcccHHH---HHHHHHH-CCCCCCCcCCCCCCHHH
Confidence 4445667887655555432 34444321 344443332 33343 3344443 56555432 2234566
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 025612 137 MLGKNKQIAMAEELFCELKKEGLDPDT---RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE 213 (250)
Q Consensus 137 ~~~~~~~~~~A~~~~~~m~~~g~~p~~---~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~ 213 (250)
..+..|..+.+..++.. .|..++. .-++.|..+ ++.|..+ +.+.+.+.|..+|..+ .+...++.|+
T Consensus 245 ~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~Ll~~GAd~n~~~---~L~~A~~~~~ 313 (337)
T 4g8k_A 245 LAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLA-VELKLKK----IAELLCKRGASTDCGD---LVMTARRNYD 313 (337)
T ss_dssp HHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHHHHTTSCSSTTCC---HHHHHHHTTC
T ss_pred HHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHHH-HHcCCHH----HHHHHHHCCCCCCCCC---HHHHHHHcCC
Confidence 77788888776655432 2444432 223455444 4567654 4445567788777654 3444566777
Q ss_pred HHHHHHHHHHHHhccCCchH
Q 025612 214 EELVAAVRRDCIQYVEFPER 233 (250)
Q Consensus 214 ~~~a~~~~~~m~~~g~~pd~ 233 (250)
.+ +.+.+.++|-.||.
T Consensus 314 ~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 314 HS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HH----HHHHHHHTTCCC--
T ss_pred HH----HHHHHHHCcCCCCC
Confidence 65 45566677766653
No 305
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=43.43 E-value=41 Score=26.60 Aligned_cols=118 Identities=9% Similarity=-0.001 Sum_probs=53.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHH---HHHHHH
Q 025612 99 LTELRRQNELDLALKVFNFVRKEVWYKPD---LSLYSDMILMLGK--NKQIAMAEELFCELKKEGLDPDTR---VYTEMI 170 (250)
Q Consensus 99 l~~~~~~~~~~~a~~~~~~m~~~~g~~~~---~~~y~~li~~~~~--~~~~~~A~~~~~~m~~~g~~p~~~---ty~~li 170 (250)
|...+..|+.+-+..++++ .|..++ ....+.+..+... .+..+. +.+.+.+.|..++.. -.+.|
T Consensus 172 L~~A~~~g~~~~v~~LL~~----~gad~n~~d~~g~t~l~~~~~~~~~~~~~~---i~~lLl~~gad~n~~d~~g~t~L- 243 (337)
T 4g8k_A 172 LMDAAEKGHVEVLKILLDE----MGADVNACDNMGRNALIHALLSSDDSDVEA---ITHLLLDHGADVNVRGERGKTPL- 243 (337)
T ss_dssp HHHHHHHTCHHHHHHHHHH----SCCCTTCCCTTSCCHHHHHHHHSCTTTHHH---HHHHHHHTTCCTTCCCGGGCCHH-
T ss_pred HHHHHHCCCHHHHHHHHhc----cCCCcCccCCCCCcHHHHHHHHcCcccHHH---HHHHHHHCCCCCCCcCCCCCCHH-
Confidence 3444566777655555432 333332 2222334333332 233333 344455666665432 23333
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCch
Q 025612 171 GVYLQVGMIDKAMETYETMKASGCTPHK---LTFTILIRNLENAGEEELVAAVRRDCIQYVEFPE 232 (250)
Q Consensus 171 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd 232 (250)
...+..|..+.+..+++ ..|..++. .-.+.|. ..++.|+.+-+ +.+.+.|..+|
T Consensus 244 ~~a~~~~~~~~v~~Ll~---~~~~~vn~~d~~G~TpL~-~A~~~g~~~iv----~~Ll~~GAd~n 300 (337)
T 4g8k_A 244 ILAVEKKHLGLVQRLLE---QEHIEINDTDSDGKTALL-LAVELKLKKIA----ELLCKRGASTD 300 (337)
T ss_dssp HHHHHTTCHHHHHHHHT---STTCCTTCBCTTSCBHHH-HHHHTTCHHHH----HHHHTTSCSST
T ss_pred HHHHHhhhhHHHHHHHH---hcCCcccCcCCCCCCHHH-HHHHcCCHHHH----HHHHHCCCCCC
Confidence 34456677765554432 12333322 1122333 33456666544 44455666554
No 306
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=42.49 E-value=1.8e+02 Score=25.78 Aligned_cols=115 Identities=9% Similarity=-0.064 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 025612 107 ELDLALKVFNFVRKEVWYKPDLSLYS----DMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKA 182 (250)
Q Consensus 107 ~~~~a~~~~~~m~~~~g~~~~~~~y~----~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a 182 (250)
+.+.|...+....+...+ +..... .+...+...+...++...+....... ++.....-.+..-.+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~~~--~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQL--NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhccCC--CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 678888888888643333 333333 33333344553456666666654432 3443444445555678999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 183 METYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 183 ~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
...|+.|...... ...-.--+-+++...|+.++|..+|..+.+
T Consensus 305 ~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999998764322 233233455677889999999999999875
No 307
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=42.19 E-value=94 Score=25.06 Aligned_cols=78 Identities=4% Similarity=-0.017 Sum_probs=54.6
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHH--HHHHHH----HHhcCCHHHHHHHHH
Q 025612 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH-KLTF--TILIRN----LENAGEEELVAAVRR 222 (250)
Q Consensus 150 ~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty--~~li~~----~~~~g~~~~a~~~~~ 222 (250)
+++.+.+.|+.|..+++.-++..|.+.=.++.+.++|+.+...|-... ...| .+++.. .....+++.+.++++
T Consensus 231 L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~ 310 (345)
T 2qfz_A 231 VHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQ 310 (345)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHT
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 555666778999899999999999988889999999999988875543 2222 223322 233577777777777
Q ss_pred HHHhc
Q 025612 223 DCIQY 227 (250)
Q Consensus 223 ~m~~~ 227 (250)
.+...
T Consensus 311 ~~p~~ 315 (345)
T 2qfz_A 311 NLPTA 315 (345)
T ss_dssp SCSCT
T ss_pred cCCCc
Confidence 65543
No 308
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=41.93 E-value=69 Score=22.81 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=10.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhC
Q 025612 135 ILMLGKNKQIAMAEELFCELKKE 157 (250)
Q Consensus 135 i~~~~~~~~~~~A~~~~~~m~~~ 157 (250)
+..+...+.+-.|.++++.+.+.
T Consensus 39 L~~L~~~~~h~sA~eI~~~l~~~ 61 (162)
T 4ets_A 39 LKTLYHSDTHYTPESLYMEIKQA 61 (162)
T ss_dssp HHHHHSCCSCBCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHhh
Confidence 33334444444444444444443
No 309
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=41.83 E-value=54 Score=22.77 Aligned_cols=134 Identities=11% Similarity=0.044 Sum_probs=66.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCcccHH-----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLKADLL-----DTLTELRRQNELDLALKVFNFVRKEVWYKPDLS--LYSDMILMLG 139 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~--~y~~li~~~~ 139 (250)
+...++.|+.+.+..+++ .|..++.. +.+...+..|+.+.+..+++ .|..++.. .-.+.+...+
T Consensus 18 l~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-----~g~~~~~~~~~g~t~L~~A~ 88 (169)
T 2y1l_E 18 LLEAARAGRDDEVRILMA----NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK-----NGADVNAVDHAGMTPLRLAA 88 (169)
T ss_dssp HHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-----TTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-----cCCCCCccCCCCCCHHHHHH
Confidence 555667788666555544 45544322 46666777888765554443 33333211 1224455556
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCH
Q 025612 140 KNKQIAMAEELFCELKKEGLDPDTR---VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKL--TFTILIRNLENAGEE 214 (250)
Q Consensus 140 ~~~~~~~A~~~~~~m~~~g~~p~~~---ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--ty~~li~~~~~~g~~ 214 (250)
..|+.+-+. .+.+.|..++.. -.+.| ...++.|..+- .+.+.+.|..++.. .-.+-+...++.|+.
T Consensus 89 ~~~~~~~~~----~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 159 (169)
T 2y1l_E 89 LFGHLEIVE----VLLKNGADVNANDMEGHTPL-HLAAMFGHLEI----VEVLLKNGADVNAQDKFGKTAFDISIDNGNE 159 (169)
T ss_dssp HTTCHHHHH----HHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HcCCHHHHH----HHHHcCCCCCCCCCCCCCHH-HHHHHcCCHHH----HHHHHHcCCCCCCcCCCCCCHHHHHHHhCCH
Confidence 667765444 444455554332 22333 33345666543 34444555554321 112233444556665
Q ss_pred HHHH
Q 025612 215 ELVA 218 (250)
Q Consensus 215 ~~a~ 218 (250)
+-+.
T Consensus 160 ~~~~ 163 (169)
T 2y1l_E 160 DLAE 163 (169)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 310
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=41.59 E-value=37 Score=24.43 Aligned_cols=27 Identities=11% Similarity=0.103 Sum_probs=21.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 025612 130 LYSDMILMLGKNKQIAMAEELFCELKK 156 (250)
Q Consensus 130 ~y~~li~~~~~~~~~~~A~~~~~~m~~ 156 (250)
....+|+-|...++.++|...++++..
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~ 38 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNL 38 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 356788888888888888888888764
No 311
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=41.44 E-value=88 Score=21.83 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=25.4
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 025612 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212 (250)
Q Consensus 154 m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 212 (250)
|.+.|++++..= -.++..+...+..-.|.++++.+++.+-..+..|.---|+.+...|
T Consensus 18 l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 444555443322 2233344444445555666666555544444444433444444443
No 312
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=41.42 E-value=38 Score=25.32 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=10.1
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 025612 98 TLTELRRQNELDLALKVFNF 117 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~ 117 (250)
.+-.|.+.|.+++|.++|+.
T Consensus 123 AV~VCiekg~Fk~A~eiLkr 142 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFER 142 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHH
Confidence 34445555555555555555
No 313
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=41.34 E-value=1.2e+02 Score=23.45 Aligned_cols=81 Identities=17% Similarity=0.191 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--C----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025612 158 GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASG--C----------TPHKLTFTILIRNLENAGEEELVAAVRRDCI 225 (250)
Q Consensus 158 g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g--~----------~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~ 225 (250)
|+..+......+.. ...|++..+...++.....+ + .+.......++++... |+.+.|.+++.++.
T Consensus 178 ~~~i~~~~l~~l~~--~~~G~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~~~~-~~~~~a~~~l~~l~ 254 (319)
T 2chq_A 178 GVKITEDGLEALIY--ISGGDFRKAINALQGAAAIGEVVDADTIYQITATARPEEMTELIQTALK-GNFMEARELLDRLM 254 (319)
T ss_dssp CCCBCHHHHHHHHH--TTTTCHHHHHHHHHHHHHSSSCBCHHHHHHHTTCCCHHHHHHHHHHHHH-TCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCCHHHHHHHHHHHHh-CCHHHHHHHHHHHH
Confidence 55555544444442 12455555555554443221 1 1122233344444443 56677777777766
Q ss_pred h-ccCCchHHHHHHHHh
Q 025612 226 Q-YVEFPERFLEEVYQK 241 (250)
Q Consensus 226 ~-~g~~pd~~~~~~~~~ 241 (250)
. .|..|..++..+...
T Consensus 255 ~~~g~~~~~i~~~l~~~ 271 (319)
T 2chq_A 255 VEYGMSGEDIVAQLFRE 271 (319)
T ss_dssp HHSCCCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHH
Confidence 5 676666655554433
No 314
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=41.26 E-value=83 Score=21.47 Aligned_cols=57 Identities=18% Similarity=0.264 Sum_probs=24.6
Q ss_pred CCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 025612 122 VWYKPDLSLYSDMILMLGKNK-QIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179 (250)
Q Consensus 122 ~g~~~~~~~y~~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 179 (250)
.|+.++..= -.++..+...+ .+-.|.++++.+.+.+...+..|----|..+...|-+
T Consensus 12 ~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 12 AGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp TTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred CCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 454444322 22333333333 3444555555555544444444444444444444443
No 315
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=40.85 E-value=73 Score=22.91 Aligned_cols=128 Identities=13% Similarity=0.049 Sum_probs=76.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHh
Q 025612 100 TELRRQNELDLALKVFNFVRKEVWYKPDL-SLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR---VYTEMIGVYLQ 175 (250)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~m~~~~g~~~~~-~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~---ty~~li~~~~~ 175 (250)
...++.|+++....++.. +..... ..-.+.+...+..|+.+.-.++.+.+.+.|..+|.. -++.|..++..
T Consensus 11 ~~Aa~~g~~~~~~~l~~~-----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~ 85 (186)
T 3t8k_A 11 SAAAMLGTYEDFLELFEK-----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQG 85 (186)
T ss_dssp HHHHHHSCHHHHHHHHHH-----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhc-----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Confidence 344678998876665542 221111 223466777778888887778888888999887653 34455444333
Q ss_pred -cCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCH-HHHHHHHHHHHh-ccCCch
Q 025612 176 -VGMIDKAMETYETMKASGCTPHKLT---FTILIRNLENAGEE-ELVAAVRRDCIQ-YVEFPE 232 (250)
Q Consensus 176 -~g~~~~a~~~~~~m~~~g~~p~~~t---y~~li~~~~~~g~~-~~a~~~~~~m~~-~g~~pd 232 (250)
..+.....++.+.+.+.|..+|... .++.+...+..+.. ..-.++++.+.+ .|..++
T Consensus 86 ~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~ 148 (186)
T 3t8k_A 86 GGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL 148 (186)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT
T ss_pred CCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc
Confidence 3345556778888888888776532 21333333333332 344567777777 776654
No 316
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=40.84 E-value=46 Score=21.43 Aligned_cols=64 Identities=13% Similarity=0.036 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCcc-cHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 025612 81 EGFQSRICRLLKA-DLLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEE 149 (250)
Q Consensus 81 ~l~~~m~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~ 149 (250)
.+++.+.+.|+-. +...-|.........+.|.++++.+.+ .| ...|..+++++...|...-|..
T Consensus 25 ~vld~L~~~~vlt~~~~e~I~~~~~~t~~~~ar~Lld~L~~-rG----~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 25 QLWDVLLSRELFRPHMIEDIQRAGSGSRRDQARQLIIDLET-RG----SQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp TTHHHHHHTTSSCHHHHHHHHTSTTCCHHHHHHHHHHHHTT-SC----TTHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHhccCCChHHHHHHHHHHHHH-cC----hHHHHHHHHHHHHcCcHHHHHH
Confidence 4666666666432 222334331122467888888888864 44 2468888888877677665543
No 317
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=40.67 E-value=26 Score=21.33 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 025612 108 LDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKN 141 (250)
Q Consensus 108 ~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~ 141 (250)
.++|...|.+|.++.++.|+ .+|...+..++..
T Consensus 14 ~eea~~~F~~LL~e~~V~~~-~tWe~~~~~i~~D 46 (71)
T 1uzc_A 14 KEEAKQAFKELLKEKRVPSN-ASWEQAMKMIIND 46 (71)
T ss_dssp HHHHHHHHHHHHHHTTCCTT-CCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHccC
Confidence 56777777777766776665 4676666666544
No 318
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=40.62 E-value=1e+02 Score=23.49 Aligned_cols=72 Identities=24% Similarity=0.336 Sum_probs=52.6
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 025612 123 WYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD-TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH 197 (250)
Q Consensus 123 g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 197 (250)
.+.-|..-...-|..--. .+.+.++|..|..+||--. +.-|-..-..+-..|++.+|.+||+.=.+.+-+|-
T Consensus 112 rYknD~RyLklWl~Ya~~---~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 112 LYKDDVRYLRIWMQYVNY---IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp GGTTCHHHHHHHHHHHTT---CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred cccCCHHHHHHHHHHHHc---cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 345555443433333222 2577899999999987654 56688888888999999999999999888888883
No 319
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=40.50 E-value=40 Score=25.47 Aligned_cols=115 Identities=9% Similarity=0.080 Sum_probs=61.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhcCcccHH------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHH--HHHHHHH
Q 025612 65 QAVHAMKLAKSSSKLEEGFQSRICRLLKADLL------DTLTELRRQNELDLALKVFNFVRKEVWYKPDLS--LYSDMIL 136 (250)
Q Consensus 65 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~------~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~--~y~~li~ 136 (250)
..+...++.|+.+.+..+++ .|..++.. +.+...+..|+.+-+..+++ .|..++.. ...+.+.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-----~g~~~~~~~~~g~t~L~ 77 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR-----HGADPVLRKKNGATPFL 77 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-----TTCCTTCCCTTCCCHHH
T ss_pred hHHHHHHHcCCHHHHHHHHH----cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH-----cCCCCcccCCCCCCHHH
Confidence 44666778888765555554 45443321 56777778888865544443 44444321 1224455
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 025612 137 MLGKNKQIAMAEELFCELKKEGLDPDT---RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH 197 (250)
Q Consensus 137 ~~~~~~~~~~A~~~~~~m~~~g~~p~~---~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 197 (250)
..+..|+.+- ++.+.+.|..++. .-++.|. ..+..|..+ +++.+.+.|..++
T Consensus 78 ~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~----~~~~Ll~~g~~~~ 132 (285)
T 1wdy_A 78 LAAIAGSVKL----LKLFLSKGADVNECDFYGFTAFM-EAAVYGKVK----ALKFLYKRGANVN 132 (285)
T ss_dssp HHHHHTCHHH----HHHHHHTTCCTTCBCTTCCBHHH-HHHHTTCHH----HHHHHHHTTCCTT
T ss_pred HHHHcCCHHH----HHHHHHcCCCCCccCcccCCHHH-HHHHhCCHH----HHHHHHHhCCCcc
Confidence 5556676554 4444556665543 2233443 335567654 4445555555544
No 320
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=40.46 E-value=1.4e+02 Score=23.76 Aligned_cols=95 Identities=13% Similarity=0.150 Sum_probs=51.0
Q ss_pred HHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---C-------CCCH-HHHHHHHHHHHhc
Q 025612 145 AMAEELFCELK-KEGLDPD-TRVYTEMIGVYLQVGMIDKAMETYETMKASG---C-------TPHK-LTFTILIRNLENA 211 (250)
Q Consensus 145 ~~A~~~~~~m~-~~g~~p~-~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g---~-------~p~~-~ty~~li~~~~~~ 211 (250)
++..+++.... ..|+..+ ......++.. ..|++.+|..+++.....+ + .|+. .....++++..+.
T Consensus 196 ~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~--~~G~~r~a~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~i~~~ 273 (354)
T 1sxj_E 196 SEISTILSDVVTNERIQLETKDILKRIAQA--SNGNLRVSLLMLESMALNNELALKSSSPIIKPDWIIVIHKLTRKIVKE 273 (354)
T ss_dssp HHHHHHHHHHHHHHTCEECCSHHHHHHHHH--HTTCHHHHHHHHTHHHHTTTTEECSSCCCCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCCCcHHHHHHHHHH--cCCCHHHHHHHHHHHHHhCCCCcCcCcCCCCccHHHHHHHHHHHHHHh
Confidence 44555555443 3355544 4444444432 2677888877777664332 1 1221 2234566666554
Q ss_pred ---CCHHHHHHHHHHHHhccCCchHHHHHHHHh
Q 025612 212 ---GEEELVAAVRRDCIQYVEFPERFLEEVYQK 241 (250)
Q Consensus 212 ---g~~~~a~~~~~~m~~~g~~pd~~~~~~~~~ 241 (250)
+.++.+.+.+.++...|+.|..+...+...
T Consensus 274 ~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~ 306 (354)
T 1sxj_E 274 RSVNSLIECRAVLYDLLAHCIPANIILKELTFS 306 (354)
T ss_dssp CSHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345556666666666788877776665543
No 321
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=40.15 E-value=83 Score=21.24 Aligned_cols=42 Identities=12% Similarity=-0.025 Sum_probs=23.2
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 025612 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA 191 (250)
Q Consensus 150 ~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 191 (250)
+|+.+.+..+.|+...--.-|..+...++++.|..++..+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555544444433444555566666666666666554
No 322
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=39.71 E-value=33 Score=23.43 Aligned_cols=46 Identities=11% Similarity=0.048 Sum_probs=27.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ 143 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~ 143 (250)
.+++.+...+..-.|.++++.+.+ .+...+..|.-..|+.+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~-~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRR-RGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHH-TTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHH-hCCCCCHhhHHHHHHHHHHCCC
Confidence 566666666666667777777754 4445555555555555555554
No 323
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=39.68 E-value=94 Score=21.67 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 025612 144 IAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGM 178 (250)
Q Consensus 144 ~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~ 178 (250)
+-.|.++++.+.+.+...+..|----|..+...|-
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 33444555555444433444443333344444443
No 324
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=39.58 E-value=23 Score=28.79 Aligned_cols=63 Identities=11% Similarity=0.025 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhCCCC
Q 025612 96 LDTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNK-QIAMAEELFCELKKEGLD 160 (250)
Q Consensus 96 ~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~-~~~~A~~~~~~m~~~g~~ 160 (250)
.+++..|...|+.++|...++++. .... -...++..+..++-+.. .-+.+.+++..+.+.|+-
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~-~p~~-~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELA-SPSL-LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTC-CGGG-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC-Cccc-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 369999999999999999999883 1111 12334444444443322 245567788888776443
No 325
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=39.38 E-value=1.3e+02 Score=23.32 Aligned_cols=95 Identities=11% Similarity=0.039 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC------------CCCHHHHHHHHHHHHh
Q 025612 144 IAMAEELFCELK-KEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGC------------TPHKLTFTILIRNLEN 210 (250)
Q Consensus 144 ~~~A~~~~~~m~-~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~------------~p~~~ty~~li~~~~~ 210 (250)
.++...++.... ..|+..+......++... .|++..+..+++.....+- .+.......++.+...
T Consensus 171 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~--~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~ 248 (327)
T 1iqp_A 171 DEDIAKRLRYIAENEGLELTEEGLQAILYIA--EGDMRRAINILQAAAALDKKITDENVFMVASRARPEDIREMMLLALK 248 (327)
T ss_dssp HHHHHHHHHHHHHTTTCEECHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCSEECHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHHc
Confidence 345555555443 346656665555555432 6777777777765543211 1223334445555433
Q ss_pred cCCHHHHHHHHHHHH-hccCCchHHHHHHHHh
Q 025612 211 AGEEELVAAVRRDCI-QYVEFPERFLEEVYQK 241 (250)
Q Consensus 211 ~g~~~~a~~~~~~m~-~~g~~pd~~~~~~~~~ 241 (250)
++++.+.+.++.+. ..|..|..++..+...
T Consensus 249 -~~~~~~~~~~~~ll~~~g~~~~~i~~~l~~~ 279 (327)
T 1iqp_A 249 -GNFLKAREKLREILLKQGLSGEDVLVQMHKE 279 (327)
T ss_dssp -TCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 68888888888887 7788887777666544
No 326
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=38.58 E-value=10 Score=29.43 Aligned_cols=84 Identities=11% Similarity=0.077 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhCCCC-------CCHHHHHHHHHHHHhcC---------ChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 025612 144 IAMAEELFCELKKEGLD-------PDTRVYTEMIGVYLQVG---------MIDKAMETYETMKASGCTP-HKLTFTILIR 206 (250)
Q Consensus 144 ~~~A~~~~~~m~~~g~~-------p~~~ty~~li~~~~~~g---------~~~~a~~~~~~m~~~g~~p-~~~ty~~li~ 206 (250)
.+.|..++.+|--..++ -...-|-++..+|++.| +.+.-.++++..++.|++- -++.|+.+|+
T Consensus 170 vetAiaml~dmG~~SvKffPM~Gl~~leEl~avAkAca~~g~~lEPTGGIdl~Nf~~I~~i~l~aGv~~viPHIYsSIID 249 (275)
T 3m6y_A 170 IKTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALEANVEQVIPHVYSSIID 249 (275)
T ss_dssp HHHHHHHHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHHHTCEEEEBSSCCTTTHHHHHHHHHHTTCSCBCCEECGGGBC
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhHHHHHHHHHHHcCCCeecccccceecc
Confidence 58899999999654322 25677999999999988 5778888899899988742 3477889998
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 025612 207 NLENAGEEELVAAVRRDCIQY 227 (250)
Q Consensus 207 ~~~~~g~~~~a~~~~~~m~~~ 227 (250)
--.-.-+++.+.+++..+++.
T Consensus 250 k~TG~TrpedV~~ll~~~K~l 270 (275)
T 3m6y_A 250 KETGNTKVEAVRELLAVVKKL 270 (275)
T ss_dssp TTTCCBCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHH
Confidence 888788999999999988753
No 327
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=37.89 E-value=83 Score=22.19 Aligned_cols=129 Identities=9% Similarity=0.042 Sum_probs=68.1
Q ss_pred HHhcCChhHHHHHHHHHHHhcCcccHH-----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHcC
Q 025612 70 MKLAKSSSKLEEGFQSRICRLLKADLL-----DTLTELRRQNELDLALKVFNFVRKEVWYKPDL---SLYSDMILMLGKN 141 (250)
Q Consensus 70 ~~~~~~~~~a~~l~~~m~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~---~~y~~li~~~~~~ 141 (250)
-++.|+.+.+..++ +.|..++.. +.+...+..+..+.+..+.+ .|..++. .-+ +.+...+..
T Consensus 11 Aa~~G~~~~v~~Ll----~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~-----~gad~~~~d~~g~-TpLh~A~~~ 80 (169)
T 4gpm_A 11 AAENGNKDRVKDLI----ENGADVNASDSDGRTPLHHAAENGHKEVVKLLIS-----KGADVNAKDSDGR-TPLHHAAEN 80 (169)
T ss_dssp HHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-----TTCCTTCCCTTSC-CHHHHHHHT
T ss_pred HHHcCCHHHHHHHH----HCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh-----cccchhhhccCCC-CHHHHHHHc
Confidence 45678877666655 457665443 46666777888776555443 3433332 222 334455566
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHH
Q 025612 142 KQIAMAEELFCELKKEGLDPDTR---VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTF--TILIRNLENAGEEEL 216 (250)
Q Consensus 142 ~~~~~A~~~~~~m~~~g~~p~~~---ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty--~~li~~~~~~g~~~~ 216 (250)
|+.+-+ +.+.+.|..+|.. -++.|..+ ++.|..+-+ +.+.+.|..|+.... .+-+...++.|+.+-
T Consensus 81 g~~~~v----~~Ll~~gadvn~~d~~G~TpLh~A-~~~g~~~~v----~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~i 151 (169)
T 4gpm_A 81 GHKEVV----KLLISKGADVNAKDSDGRTPLHHA-AENGHKEVV----KLLISKGADVNTSDSDGRTPLDLAREHGNEEV 151 (169)
T ss_dssp TCHHHH----HHHHHTTCCTTCCCTTSCCHHHHH-HHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred CCHHHH----HHHHHCcCCCCCCCCCCCCHHHHH-HHcCCHHHH----HHHHHcCCCccccCCCCCCHHHHHHHcCCHHH
Confidence 776544 4445667666543 24455444 456776544 444556655543211 122333455666643
Q ss_pred H
Q 025612 217 V 217 (250)
Q Consensus 217 a 217 (250)
+
T Consensus 152 v 152 (169)
T 4gpm_A 152 V 152 (169)
T ss_dssp H
T ss_pred H
Confidence 3
No 328
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=37.33 E-value=94 Score=20.97 Aligned_cols=41 Identities=7% Similarity=-0.081 Sum_probs=20.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 186 YETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 186 ~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
|+.+....+.|+...--.-|..+...++++.|.++...+..
T Consensus 49 fdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 49 REQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444544444333344444455566666666555543
No 329
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=36.79 E-value=66 Score=21.82 Aligned_cols=41 Identities=20% Similarity=0.240 Sum_probs=16.9
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 025612 137 MLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVG 177 (250)
Q Consensus 137 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 177 (250)
.+...+.+-.|.++++.+.+.+...+..|----|+.+...|
T Consensus 19 ~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 19 LLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33333334444444444444433334433333334444444
No 330
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=36.61 E-value=1e+02 Score=21.25 Aligned_cols=58 Identities=14% Similarity=0.132 Sum_probs=24.9
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 025612 154 LKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAG 212 (250)
Q Consensus 154 m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 212 (250)
|.+.|++++..=- .++..+...+..-.|.++++.+++.+-..+..|.---|+.+...|
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 4444554443322 223333333444455555555555444444444333344444333
No 331
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=36.30 E-value=2.7e+02 Score=25.97 Aligned_cols=94 Identities=7% Similarity=-0.061 Sum_probs=59.9
Q ss_pred HHHHHHHcCC---HHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 025612 98 TLTELRRQNE---LDLALKVFNFVRKE---VWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIG 171 (250)
Q Consensus 98 ll~~~~~~~~---~~~a~~~~~~m~~~---~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~ 171 (250)
++...|+.|. .+.|.+.|+..... ..+.||.. +.+...-.+.|.-++-..+++..... .+..--..++.
T Consensus 692 ~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ll~ 766 (909)
T 4fke_A 692 AISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKLRS 766 (909)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHHHH
Confidence 6666777776 45778888876531 12556632 33334444567766666777777664 24455577888
Q ss_pred HHHhcCChHHHHHHHHHHHHCC-CCC
Q 025612 172 VYLQVGMIDKAMETYETMKASG-CTP 196 (250)
Q Consensus 172 ~~~~~g~~~~a~~~~~~m~~~g-~~p 196 (250)
+++...+.....++++...... +++
T Consensus 767 aL~~~~d~~~l~~~L~~~l~~~~ir~ 792 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYTLNPDLIRK 792 (909)
T ss_dssp HHTTCCCHHHHHHHHHHTTCTTTSCG
T ss_pred HhCCCCCHHHHHHHHHHHhCCCCCch
Confidence 8888888888888887766543 444
No 332
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=36.24 E-value=94 Score=23.92 Aligned_cols=42 Identities=7% Similarity=-0.091 Sum_probs=18.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCcccHH---HHHHHHHHcCCHHHHH
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLKADLL---DTLTELRRQNELDLAL 112 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~---~ll~~~~~~~~~~~a~ 112 (250)
+...+..|+.+-+..+++ .|..++.. +.+...+..|+.+-+.
T Consensus 35 L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v~ 79 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIVK 79 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHHH
T ss_pred HHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 444455566544443333 34333221 3444445555554433
No 333
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=36.03 E-value=94 Score=20.58 Aligned_cols=10 Identities=30% Similarity=0.358 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 025612 214 EELVAAVRRD 223 (250)
Q Consensus 214 ~~~a~~~~~~ 223 (250)
.+++..++..
T Consensus 120 ~~~~~~~~~~ 129 (149)
T 2mys_C 120 EEEVEELMKG 129 (149)
T ss_pred HHHHHHHHhh
Confidence 4444555444
No 334
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=35.95 E-value=18 Score=21.28 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHH-CCCCCCHHHHHHHHHHH-HhcC
Q 025612 180 DKAMETYETMKA-SGCTPHKLTFTILIRNL-ENAG 212 (250)
Q Consensus 180 ~~a~~~~~~m~~-~g~~p~~~ty~~li~~~-~~~g 212 (250)
++|.+.|.+|.+ .+|.|+ -||.-.|+.+ ++-.
T Consensus 3 eEae~aF~~lL~~~~V~s~-wsweqamr~i~i~DP 36 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDST-WSFSRIISELGTRDP 36 (59)
T ss_dssp THHHHHHHHHHHHTTCCSS-CCHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHcCCCCC-CcHHHHHHHhccCCC
Confidence 456666666543 355443 4677777666 5443
No 335
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=35.91 E-value=22 Score=20.80 Aligned_cols=25 Identities=4% Similarity=-0.016 Sum_probs=17.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCCCH
Q 025612 104 RQNELDLALKVFNFVRKEVWYKPDL 128 (250)
Q Consensus 104 ~~~~~~~a~~~~~~m~~~~g~~~~~ 128 (250)
...+++.|...|.++.....++|+.
T Consensus 32 ~~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 32 NNWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred cCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 4567888888888886555566654
No 336
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=35.89 E-value=77 Score=23.06 Aligned_cols=18 Identities=11% Similarity=0.124 Sum_probs=8.4
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 025612 204 LIRNLENAGEEELVAAVR 221 (250)
Q Consensus 204 li~~~~~~g~~~~a~~~~ 221 (250)
.+...+..|+.+-+..++
T Consensus 180 ~L~~A~~~~~~~~v~~Ll 197 (240)
T 3eu9_A 180 ALHWAVLAGNTTVISLLL 197 (240)
T ss_dssp HHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 344444555555444333
No 337
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=35.28 E-value=9.3 Score=29.25 Aligned_cols=83 Identities=8% Similarity=0.081 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhCCCC-------CCHHHHHHHHHHHHhcC---------ChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 025612 144 IAMAEELFCELKKEGLD-------PDTRVYTEMIGVYLQVG---------MIDKAMETYETMKASGCTP-HKLTFTILIR 206 (250)
Q Consensus 144 ~~~A~~~~~~m~~~g~~-------p~~~ty~~li~~~~~~g---------~~~~a~~~~~~m~~~g~~p-~~~ty~~li~ 206 (250)
.+.|..++.+|--..++ -...-|-++..+|++.| +.+.-.++++..++.|++- -++.|+.+|+
T Consensus 147 vetAiaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~~viPHIYssIID 226 (249)
T 3m0z_A 147 LETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSIID 226 (249)
T ss_dssp HHHHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCSCBCCBCCGGGBC
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCCeecccccceecc
Confidence 58889898888654322 25677899999999988 5677888888888887632 3477889998
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 025612 207 NLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 207 ~~~~~g~~~~a~~~~~~m~~ 226 (250)
--.-.-+.+.+.+++..+++
T Consensus 227 k~TG~TrpedV~~ll~~~K~ 246 (249)
T 3m0z_A 227 KASGNTRPADVRQLLEMTKQ 246 (249)
T ss_dssp TTTCCBCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 88888899999999998875
No 338
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=34.66 E-value=56 Score=22.53 Aligned_cols=46 Identities=17% Similarity=0.157 Sum_probs=22.6
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 025612 134 MILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI 179 (250)
Q Consensus 134 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 179 (250)
++..+...+.+-.|.++++.+.+.+...+..|-=--|..+...|-+
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3444444444455555555555554444544444444444444443
No 339
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=34.61 E-value=34 Score=23.64 Aligned_cols=17 Identities=6% Similarity=-0.060 Sum_probs=7.7
Q ss_pred HHHHHhcCChhHHHHHH
Q 025612 67 VHAMKLAKSSSKLEEGF 83 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~ 83 (250)
+...++.|+.+.+..++
T Consensus 12 l~~A~~~g~~~~v~~ll 28 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLC 28 (165)
T ss_dssp HHHHHHHTCHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHH
Confidence 33444455544444443
No 340
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=34.47 E-value=16 Score=21.25 Aligned_cols=22 Identities=14% Similarity=-0.046 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHHHhccCCchHHH
Q 025612 213 EEELVAAVRRDCIQYVEFPERFL 235 (250)
Q Consensus 213 ~~~~a~~~~~~m~~~g~~pd~~~ 235 (250)
+++.|...|.+. +..++|++|+
T Consensus 34 d~~~A~~~F~~~-~~~IP~eAF~ 55 (57)
T 2jp7_A 34 NYEVAIKGFQSS-MNGIPREAFV 55 (57)
T ss_dssp CSHHHHHHHHHS-TTTSCHHHHT
T ss_pred CHHHHHHHHHHH-HcCCCHHHhc
Confidence 678888888776 4567777764
No 341
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=34.46 E-value=67 Score=19.17 Aligned_cols=44 Identities=18% Similarity=0.143 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 025612 166 YTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLEN 210 (250)
Q Consensus 166 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~ 210 (250)
++.++..+++-.-++++...+++..+.|. .+..+|.--++.+++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 55566666666666666666666666653 355566555555555
No 342
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=34.44 E-value=56 Score=26.25 Aligned_cols=75 Identities=8% Similarity=0.088 Sum_probs=51.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHH
Q 025612 149 ELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNL----ENAGEEELVAAVRRD 223 (250)
Q Consensus 149 ~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~----~~~g~~~~a~~~~~~ 223 (250)
++++.+.+.|+.|..+++..++..|.+.=.++.+.++|+.+...|...-....-+++..+ .+..+++...++++.
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~ 287 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKS 287 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 466677788999988999999998888777999999999988877542222222233222 233467777766665
No 343
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=33.53 E-value=1.3e+02 Score=21.35 Aligned_cols=71 Identities=17% Similarity=0.205 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 025612 124 YKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD-TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPH 197 (250)
Q Consensus 124 ~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 197 (250)
..-|..-...-|..--.. +++.++|..|..+|+--. +.-|-..-..+-..|++.+|.+||+.=.+.+-+|-
T Consensus 64 YknD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 64 YHNDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp GTTCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 444554444444333333 338899999999877654 55677888888889999999999999888888883
No 344
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=33.22 E-value=82 Score=23.77 Aligned_cols=11 Identities=27% Similarity=0.184 Sum_probs=4.6
Q ss_pred HHHHHHcCCHH
Q 025612 99 LTELRRQNELD 109 (250)
Q Consensus 99 l~~~~~~~~~~ 109 (250)
+...+..|+.+
T Consensus 40 L~~A~~~g~~~ 50 (261)
T 2xai_A 40 LHEACLGGHLS 50 (261)
T ss_dssp HHHHHHHTCHH
T ss_pred HHHHHHcCCHH
Confidence 33333444443
No 345
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=33.11 E-value=1.1e+02 Score=28.04 Aligned_cols=98 Identities=10% Similarity=0.006 Sum_probs=57.3
Q ss_pred HHHHHhcCChhH--HHHHHHHHHHhcCcccHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 025612 67 VHAMKLAKSSSK--LEEGFQSRICRLLKADLL-DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQ 143 (250)
Q Consensus 67 l~~~~~~~~~~~--a~~l~~~m~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~ 143 (250)
+...|..|..+- |.++|+.. ..++|+.. .+.....+.|.- -..+++...+ ..+..--..++.+++...+
T Consensus 593 ~~~a~~~~~~~~~~a~~~f~~~--~~i~~~lr~~v~~~~~~~g~~--~~~l~~~~~~----~~~~~~~~~~l~al~~~~~ 664 (780)
T 1z5h_A 593 SRLYVMVDESYAEEMSKLFKDF--DSAEPEMRSSIATAYALVTGD--LKGLLEKFRS----VDRDEDRVRIISAFGKLKS 664 (780)
T ss_dssp HHHHHHHCHHHHHHHHTTGGGG--GGSCHHHHHHHHHHHHHHTCC--HHHHHHHHHS----CCSHHHHHHHHHHHTTCCC
T ss_pred HHHHHhcCCHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCcH--HHHHHHHHhc----CCCHHHHHHHHHHhccCCC
Confidence 555666664222 33333322 34667777 344444555542 3335555532 3466667889999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 025612 144 IAMAEELFCELKKEGLDPDTRVYTEMIGVYL 174 (250)
Q Consensus 144 ~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~ 174 (250)
.+...++++.... +.. ...-...++.+..
T Consensus 665 ~~~~~~~l~~~~~-~~i-~~qd~~~~~~~~~ 693 (780)
T 1z5h_A 665 NTDLSTVYGMVEK-TEI-KKQDMISFFSSAL 693 (780)
T ss_dssp HHHHHHHHHHHHT-TSS-CHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc-CCC-CHHHHHHHHHHHH
Confidence 9999999988776 322 3333444555554
No 346
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=32.94 E-value=1.3e+02 Score=26.40 Aligned_cols=48 Identities=6% Similarity=0.068 Sum_probs=16.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMA 147 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A 147 (250)
.++..|.+.|-.+.|.+++..+.. .-+ -+-..| .-|..|+|+|+++.+
T Consensus 521 ~vL~iCa~l~L~~~ar~I~k~~g~-k~l-~~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 521 WMLSICVEWRLPEIAKEIYTTLGN-QML-SAHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHC---------------------------
T ss_pred HHHHHHHHCCChHHHHHHHHHHHH-HHH-HCccHH-HHHHHHHHcCChhhc
Confidence 477777777777777777777642 222 222344 555666777766654
No 347
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=32.86 E-value=2.8e+02 Score=26.06 Aligned_cols=111 Identities=12% Similarity=0.012 Sum_probs=52.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 025612 97 DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQV 176 (250)
Q Consensus 97 ~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 176 (250)
.++..|...|..+-|.++.... +.+...-=.+-.+|...|++++|..+|++.- .|+..+....+..
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~------- 880 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVL------- 880 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGC------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGG-------
T ss_pred HHHHHHHHhcHHHHHHHHHhhc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccch-------
Confidence 3566666677776655544333 2232221123345667777777777776642 2332221110000
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 177 GMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 177 g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
+....++.... .-.....=|..+++.+-+.+-++.+.++-+...+
T Consensus 881 ---~~~~~ll~~~e--~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 881 ---REFQEIAEKYH--HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp ---HHHHHHHHHTT--TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---hhhhhccCccc--ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 00000111000 0001112466777777777777777776666554
No 348
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.58 E-value=2.5e+02 Score=24.41 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 025612 128 LSLYSDMILMLGKNKQIAMAEELFCELK 155 (250)
Q Consensus 128 ~~~y~~li~~~~~~~~~~~A~~~~~~m~ 155 (250)
+..+|.+++.|...+.++.|.++.....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~ 258 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE 258 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc
Confidence 6778889999999999999998888764
No 349
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=32.10 E-value=28 Score=24.77 Aligned_cols=33 Identities=9% Similarity=0.115 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 025612 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139 (250)
Q Consensus 107 ~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~ 139 (250)
.+++|.+.+..|++.....-.+..||..|..+-
T Consensus 73 ~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~LK 105 (152)
T 1rw2_A 73 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQ 105 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 567788888777653332234566887776654
No 350
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=32.05 E-value=1.9e+02 Score=22.82 Aligned_cols=96 Identities=6% Similarity=0.141 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--------CCCCCHH----------HHHH
Q 025612 143 QIAMAEELFCELKKE-GLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKAS--------GCTPHKL----------TFTI 203 (250)
Q Consensus 143 ~~~~A~~~~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~--------g~~p~~~----------ty~~ 203 (250)
..++...++...... |+..+......++.... |++..+..+++..... .+.++.. ....
T Consensus 193 ~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~--G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~~~~~~~~~~ 270 (353)
T 1sxj_D 193 DASNAIDRLRFISEQENVKCDDGVLERILDISA--GDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPHDILIE 270 (353)
T ss_dssp CHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTS--SCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHTCCCSHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhCCCCHHHHHH
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCchHHHHHHHHh
Q 025612 204 LIRNLENAGEEELVAAVRRDCIQYVEFPERFLEEVYQK 241 (250)
Q Consensus 204 li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~~~~~~ 241 (250)
+++++ ..++.+.|..++.++...|..|..++..+...
T Consensus 271 l~~~~-~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~ 307 (353)
T 1sxj_D 271 IVEKV-KSGDFDEIKKYVNTFMKSGWSAASVVNQLHEY 307 (353)
T ss_dssp HHHHH-HSCCHHHHHHHHHHHHHTSCCCTTHHHHHHHH
T ss_pred HHHHH-hcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
No 351
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=31.42 E-value=2.4e+02 Score=24.83 Aligned_cols=53 Identities=23% Similarity=0.228 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 025612 163 TRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELV 217 (250)
Q Consensus 163 ~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a 217 (250)
..--.-++..|.+.|..+.|.++++.|-..-+. +...| .-+..|+|+|+++.+
T Consensus 516 ndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 516 NDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 445677888899999999999998888665433 33455 667778888888765
No 352
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=31.04 E-value=1.1e+02 Score=22.35 Aligned_cols=146 Identities=8% Similarity=-0.036 Sum_probs=83.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCcc--------c--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHH-------
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLKA--------D--LLDTLTELRRQNELDLALKVFNFVRKEVWYKPDLS------- 129 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~~--------~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~------- 129 (250)
+...+..|+.+-+..+++. |..+ + -.+.+...+..|+.+-+..+++ .|..++..
T Consensus 41 L~~A~~~g~~~~v~~Ll~~----~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-----~g~~~~~~~~~~~~~ 111 (232)
T 2rfa_A 41 LHIAALYDNLEAAMVLMEA----APELVFEPMTSELYEGQTALHIAVINQNVNLVRALLA-----RGASVSARATGSVFH 111 (232)
T ss_dssp HHHHHHTTCHHHHHHHHHH----CGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHH-----TTCCTTCCCCSGGGS
T ss_pred HHHHHHcCCHHHHHHHHHc----CchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHh-----CCCCCCcccCCccee
Confidence 5556677887666655554 3322 1 1145666677888875554443 34444321
Q ss_pred --------HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---
Q 025612 130 --------LYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRV--YTEMIGVYLQVGMIDKAMETYETMKASGCTP--- 196 (250)
Q Consensus 130 --------~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t--y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--- 196 (250)
.-.+.+...+..|+.+-+. .+.+.|..++... -.+-+...+..|..+-+..+++.+.+.|..+
T Consensus 112 ~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~ 187 (232)
T 2rfa_A 112 YRPHNLIYYGEHPLSFAACVGSEEIVR----LLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLK 187 (232)
T ss_dssp CCTTCSCCCCSSHHHHHHHHTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSC
T ss_pred ecccccccCCCCHHHHHHHcCCHHHHH----HHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhh
Confidence 1234555556667765444 4445566654321 1233444567888888888888888877543
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 197 ------HKLTFTILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 197 ------~~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
|..-.+ -+...++.|+.+-+..+++.-..
T Consensus 188 ~~~~~~~~~g~t-pl~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 188 SLELVPNNQGLT-PFKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp CGGGCCCTTSCC-HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhccCCCCCCC-HHHHHHHcCCHHHHHHHHhcCcc
Confidence 333333 34555667888777766665443
No 353
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=30.62 E-value=1.4e+02 Score=20.81 Aligned_cols=114 Identities=7% Similarity=0.002 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHh-cCC------
Q 025612 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEG-LDPDTRVYTEMIGVYLQ-VGM------ 178 (250)
Q Consensus 107 ~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~ty~~li~~~~~-~g~------ 178 (250)
....+..+|..+-....-..+..-|-.++.........+....+|+.+-..| =..+..-+..++..... .|.
T Consensus 54 ~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~e~~~~~~~~~~~~g~~~~~~~ 133 (183)
T 1s6c_A 54 ASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVL 133 (183)
T ss_dssp CHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHHTC-------
T ss_pred hHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHHHHhccccCcCc
Confidence 3455566666653222223344445555555444444555666666664321 12233333333322211 132
Q ss_pred -----hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 025612 179 -----IDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEELVAAVRR 222 (250)
Q Consensus 179 -----~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~ 222 (250)
-+++..+|+.+-..| -...+|.-++..+.+...+-.....|+
T Consensus 134 ~~~~~~~~~~~~f~~~D~d~--dG~i~~~Ef~~~~~~~~~~~~~l~~~d 180 (183)
T 1s6c_A 134 KEDTPRQHVDVFFQKMDKNK--DGIVTLDEFLESXQEDDNIMRSLQLFQ 180 (183)
T ss_dssp ----CHHHHHHHHHHHCTTC--SSEECHHHHHHHTTSCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCCC--CCcEeHHHHHHHHhcChHHHHHHHHhh
Confidence 145555666553332 122455566666555555555544444
No 354
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=30.41 E-value=85 Score=24.19 Aligned_cols=108 Identities=7% Similarity=0.018 Sum_probs=53.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCcccHH-----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLKADLL-----DTLTELRRQNELDLALKVFNFVRKEVWYKPD---LSLYSDMILML 138 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~---~~~y~~li~~~ 138 (250)
+...+..|+.+-+..+ .+.|..++.. +.+...+..|+.+-+..+++. |..++ ...+.+.+...
T Consensus 66 L~~A~~~g~~~~v~~L----l~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-----ga~~~~~~~~g~~t~L~~A 136 (285)
T 3kea_A 66 LHQAATLEDTKIVKIL----LFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK-----NWRLMFYGKTGWKTSFYHA 136 (285)
T ss_dssp HHHHTTSSSCHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-----CGGGGGCSSSGGGSHHHHH
T ss_pred HHHHHHcCCHHHHHHH----HHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc-----CCCCCccCCCCCCCHHHHH
Confidence 4445566665544443 3445554332 455566677777665555543 22222 12224556666
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCC-CH-HHHHHHHHHHHhcCChHHHHHHHHH
Q 025612 139 GKNKQIAMAEELFCELKKEGLDP-DT-RVYTEMIGVYLQVGMIDKAMETYET 188 (250)
Q Consensus 139 ~~~~~~~~A~~~~~~m~~~g~~p-~~-~ty~~li~~~~~~g~~~~a~~~~~~ 188 (250)
+..|..+-+.. +.+.|..+ +. .-++. +...+..|..+-+.-+++.
T Consensus 137 ~~~~~~~~v~~----Ll~~g~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 137 VMLNDVSIVSY----FLSEIPSTFDLAILLSC-IHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHTTCHHHHHH----HHTTSCTTCCCSTHHHH-HHHHHHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHH----HHhCCCccccccCCccH-HHHHHHcChHHHHHHHHHc
Confidence 66777654443 33444333 21 22333 3344566776655555544
No 355
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=29.78 E-value=56 Score=22.91 Aligned_cols=114 Identities=7% Similarity=-0.069 Sum_probs=56.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCccc---HH--HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHH
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLKAD---LL--DTLTELRRQNELDLALKVFNFVRKEVWYKPDLSL--YSDMILMLG 139 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~~~---~~--~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~~--y~~li~~~~ 139 (250)
+...+..|+.+.+..+++.- +..++ .. +.+...+..|+.+.+..+++ .|..++... -.+.+...+
T Consensus 9 l~~A~~~g~~~~v~~ll~~~---~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-----~g~~~~~~~~~g~t~L~~A~ 80 (179)
T 3f6q_A 9 IFTQCREGNAVAVRLWLDNT---ENDLNQGDDHGFSPLHWACREGRSAVVEMLIM-----RGARINVMNRGDDTPLHLAA 80 (179)
T ss_dssp HHHHHHHTCHHHHHHHHHCT---TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-----TTCCTTCCCTTCCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcC---cccccccCCCCCCHHHHHHHcCcHHHHHHHHH-----cCCCCCCcCCCCCCHHHHHH
Confidence 55566778877666665532 22221 11 46666677888765444433 344443211 124455556
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 025612 140 KNKQIAMAEELFCELKKEGLDPDTR---VYTEMIGVYLQVGMIDKAMETYETMKASGCTPH 197 (250)
Q Consensus 140 ~~~~~~~A~~~~~~m~~~g~~p~~~---ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 197 (250)
..|+.+-+ +.+.+.|..++.. -.+.| ...+..|..+ +.+.+.+.|..++
T Consensus 81 ~~~~~~~v----~~Ll~~g~~~~~~d~~g~t~L-~~A~~~~~~~----~v~~Ll~~ga~~~ 132 (179)
T 3f6q_A 81 SHGHRDIV----QKLLQYKADINAVNEHGNVPL-HYACFWGQDQ----VAEDLVANGALVS 132 (179)
T ss_dssp HTTCHHHH----HHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHH----HHHHHHHTTCCSS
T ss_pred HcCCHHHH----HHHHHcCCCCCccCCCCCCHH-HHHHHcCCHH----HHHHHHHCCCCcc
Confidence 66775543 3444556555432 22333 3334556654 3334445555443
No 356
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=29.30 E-value=2.7e+02 Score=23.88 Aligned_cols=96 Identities=14% Similarity=0.118 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 025612 123 WYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFT 202 (250)
Q Consensus 123 g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~ 202 (250)
|++--...|---.+.+...|++++|-++-..- .+|+-.+..|.+-+-+.-..-|...-.+.+|..+.+.| +.|..---
T Consensus 356 ~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~s-P~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ESl 433 (494)
T 1bpo_A 356 NLAGAEELFARKFNALFAQGNYSEAAKVAANA-PKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESL 433 (494)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS-GGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHHH
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhC-ccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHhh
Confidence 33333334444444444445554444433321 22344444444444333333344444444444444443 23333333
Q ss_pred HHHHHHHhcCCHHHHHHH
Q 025612 203 ILIRNLENAGEEELVAAV 220 (250)
Q Consensus 203 ~li~~~~~~g~~~~a~~~ 220 (250)
-+++.-...|+.+..+++
T Consensus 434 El~r~vL~q~r~~llekW 451 (494)
T 1bpo_A 434 ELCRPVLQQGRKQLLEKW 451 (494)
T ss_dssp HHHHHHHHTTCHHHHHHH
T ss_pred HHhHHHHhccHHHHHHHH
Confidence 334444444444444443
No 357
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=29.21 E-value=1.3e+02 Score=21.06 Aligned_cols=138 Identities=12% Similarity=0.017 Sum_probs=66.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCcccHH-----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLKADLL-----DTLTELRRQNELDLALKVFNFVRKEVWYKPDLS--LYSDMILMLG 139 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~--~y~~li~~~~ 139 (250)
+...+..|+.+.+..+++. |..++.. +.+...+..|+.+-+..+++. |..++.. .-.+.+...+
T Consensus 39 L~~A~~~g~~~~v~~Ll~~----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----g~~~~~~~~~g~t~L~~A~ 109 (192)
T 2rfm_A 39 LMVACMLGMENAIDKLVEN----FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK-----GSNVNTKDFSGKTPLMWSI 109 (192)
T ss_dssp HHHHHHHTCGGGHHHHHHH----HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-----TCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHh----ccccccccccCccHHHHHHHcCCHHHHHHHHHC-----CCCCCCCCCCCCcHHHHHH
Confidence 4556666777766666654 3322211 456666777887766555543 2222211 1123344445
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCH
Q 025612 140 KNKQIAMAEELFCELKKEGLDPDTR---VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT--FTILIRNLENAGEE 214 (250)
Q Consensus 140 ~~~~~~~A~~~~~~m~~~g~~p~~~---ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--y~~li~~~~~~g~~ 214 (250)
..|..+-+ +.+.+.|..++.. -.+.|.. .+..|..+ +.+.+.+.|..++... -.+-+...+..|+.
T Consensus 110 ~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~----~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~ 180 (192)
T 2rfm_A 110 IFGYSEMS----YFLLEHGANVNDRNLEGETPLIV-ASKYGRSE----IVKKLLELGADISARDLTGLTAEASARIFGRQ 180 (192)
T ss_dssp HHTCHHHH----HHHHHTTCCSSCCCTTCCCHHHH-HHHHTCHH----HHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCH
T ss_pred HcCCHHHH----HHHHHCCCCCCCCCCCCCCHHHH-HHHcCCHH----HHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcH
Confidence 55665543 3444556555432 2333333 34556654 3444445565554321 11234444556666
Q ss_pred HHHHHHHH
Q 025612 215 ELVAAVRR 222 (250)
Q Consensus 215 ~~a~~~~~ 222 (250)
+-+.-+++
T Consensus 181 ~~v~~Ll~ 188 (192)
T 2rfm_A 181 EVIKIFTE 188 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 65554443
No 358
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=29.13 E-value=63 Score=23.44 Aligned_cols=140 Identities=9% Similarity=-0.021 Sum_probs=64.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCcccHH-----HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHc
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLKADLL-----DTLTELRRQNELDLALKVFNFVRKEVWY-KPDLSLYSDMILMLGK 140 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~~g~-~~~~~~y~~li~~~~~ 140 (250)
+...+..|+.+-+..++ +.|..++.. +.+...+..|+.+-+..+++.-. ..+ ..+.... +.+...+.
T Consensus 29 L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~--~~~~~~~~~g~-t~L~~A~~ 101 (223)
T 2f8y_A 29 LHLAARYSRSDAAKRLL----EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA--TDLDARMHDGT-TPLILAAR 101 (223)
T ss_dssp HHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTT--SCTTCCCTTCC-CHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC--CCcccCCCCCC-cHHHHHHH
Confidence 55566778855544444 445544332 46666677888776555554221 011 1111122 33444445
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHH
Q 025612 141 NKQIAMAEELFCELKKEGLDPDTR---VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT--FTILIRNLENAGEEE 215 (250)
Q Consensus 141 ~~~~~~A~~~~~~m~~~g~~p~~~---ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--y~~li~~~~~~g~~~ 215 (250)
.|+.+-+ +.+.+.|..++.. -++.| ...+..|..+-+. .+.+.|..++... -.+.+...++.|+.+
T Consensus 102 ~~~~~~~----~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 172 (223)
T 2f8y_A 102 LAVEGML----EDLINSHADVNAVDDLGKSAL-HWAAAVNNVDAAV----VLLKNGANKDMQNNREETPLFLAAREGSYE 172 (223)
T ss_dssp HTCHHHH----HHHHHTTCCTTCBCTTSCBHH-HHHHHTTCHHHHH----HHHHTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred hCcHHHH----HHHHHcCCCCcCcCCCCCcHH-HHHHHcCCHHHHH----HHHHcCCCCCCcCCCCcCHHHHHHHcCCHH
Confidence 5665433 3444455554432 22333 3334556654433 4444454443211 112333445566665
Q ss_pred HHHHHHH
Q 025612 216 LVAAVRR 222 (250)
Q Consensus 216 ~a~~~~~ 222 (250)
-+..+++
T Consensus 173 ~v~~Ll~ 179 (223)
T 2f8y_A 173 TAKVLLD 179 (223)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444433
No 359
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=28.93 E-value=60 Score=24.33 Aligned_cols=152 Identities=10% Similarity=-0.043 Sum_probs=82.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCcccH-------H--HHHHHHHHc---CCHHHHHHHHHHHHHhCC-CC--------
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLKADL-------L--DTLTELRRQ---NELDLALKVFNFVRKEVW-YK-------- 125 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~-------~--~ll~~~~~~---~~~~~a~~~~~~m~~~~g-~~-------- 125 (250)
+...+..|+.+.+..+++.+.+.|..++. . +.+...+.. |+.+-+..+++.-.. .+ ..
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~-~~~~~~~~~~~~~ 84 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKD-SGNPKPLVNAQCT 84 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHH-TTCSSCGGGCCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCc-ccchhhhcccccc
Confidence 55667789999888888888877776543 1 455555566 888777777765432 21 11
Q ss_pred -CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH----------------HHHHHHHHHHhcCChHHHHHHHHH
Q 025612 126 -PDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTR----------------VYTEMIGVYLQVGMIDKAMETYET 188 (250)
Q Consensus 126 -~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~----------------ty~~li~~~~~~g~~~~a~~~~~~ 188 (250)
.|.. -.+.+...+..|+.+-+.. +.+.|..++.. -++.|.. .+..|..+-+ +.
T Consensus 85 ~~d~~-g~t~L~~A~~~g~~~~v~~----Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~-A~~~~~~~~v----~~ 154 (256)
T 2etb_A 85 DEFYQ-GHSALHIAIEKRSLQCVKL----LVENGADVHLRACGRFFQKHQGTCFYFGELPLSL-AACTKQWDVV----TY 154 (256)
T ss_dssp STTTT-TCCHHHHHHHTTCHHHHHH----HHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHH-HHHTTCHHHH----HH
T ss_pred ccccc-CCCHHHHHHHcCCHHHHHH----HHHcCCCCCcccccccccccccccccCCCCHHHH-HHHcCCHHHH----HH
Confidence 1111 2344555666777665544 44556665543 3344443 4556776544 44
Q ss_pred HHH---CCCCCCH---HHHHHHHHHHH-hcCCHH---HHHHHHHHHHhccC
Q 025612 189 MKA---SGCTPHK---LTFTILIRNLE-NAGEEE---LVAAVRRDCIQYVE 229 (250)
Q Consensus 189 m~~---~g~~p~~---~ty~~li~~~~-~~g~~~---~a~~~~~~m~~~g~ 229 (250)
+.+ .|..++. .-.+.|.-++. ..+..+ ...++++.+.+.|.
T Consensus 155 Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga 205 (256)
T 2etb_A 155 LLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGA 205 (256)
T ss_dssp HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCC
Confidence 445 5554432 23344444443 256655 12234444444443
No 360
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=28.77 E-value=36 Score=23.19 Aligned_cols=139 Identities=10% Similarity=0.061 Sum_probs=67.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCcccH---H--HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLKADL---L--DTLTELRRQNELDLALKVFNFVRKEVWYKPDLS--LYSDMILMLG 139 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~---~--~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~--~y~~li~~~~ 139 (250)
+...+..|+.+.+..+++. .+..++. . +.+.. +..|+.+.+..+++ .|..++.. .-.+.+...+
T Consensus 6 L~~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~-----~g~~~~~~~~~g~t~L~~A~ 76 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHR---ELVHPDALNRFGKTALQV-MMFGSTAIALELLK-----QGASPNVQDTSGTSPVHDAA 76 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHT---TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHH-----TTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh---hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHH-----CCCCCCCcCCCCCCHHHHHH
Confidence 5556677888877777766 2222221 1 45555 77788765554443 34333321 1223455555
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 025612 140 KNKQIAMAEELFCELKKEGLDPDT---RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGEEEL 216 (250)
Q Consensus 140 ~~~~~~~A~~~~~~m~~~g~~p~~---~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 216 (250)
..|+.+-+. .+.+.|..++. .-++.|..+ ++.|..+-+..+++. ..-. ..|..-. +-+...++.|+.+-
T Consensus 77 ~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~~~~v~~Ll~~-~~~~-~~~~~g~-t~l~~A~~~~~~~~ 148 (156)
T 1bd8_A 77 RTGFLDTLK----VLVEHGADVNVPDGTGALPIHLA-VQEGHTAVVSFLAAE-SDLH-RRDARGL-TPLELALQRGAQDL 148 (156)
T ss_dssp HTTCHHHHH----HHHHTTCCSCCCCTTSCCHHHHH-HHHTCHHHHHHHHTT-SCTT-CCCTTSC-CHHHHHHHSCCHHH
T ss_pred HcCcHHHHH----HHHHcCCCCCCcCCCCCcHHHHH-HHhChHHHHHHHHhc-cCCC-CcCCCCC-CHHHHHHHcCcHHH
Confidence 667765444 33445554432 233344333 456666655555444 1111 1122112 23344456677766
Q ss_pred HHHHHH
Q 025612 217 VAAVRR 222 (250)
Q Consensus 217 a~~~~~ 222 (250)
+.-+++
T Consensus 149 v~~Ll~ 154 (156)
T 1bd8_A 149 VDILQG 154 (156)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 655543
No 361
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=28.13 E-value=54 Score=24.63 Aligned_cols=19 Identities=5% Similarity=0.039 Sum_probs=10.2
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 025612 204 LIRNLENAGEEELVAAVRR 222 (250)
Q Consensus 204 li~~~~~~g~~~~a~~~~~ 222 (250)
.+...+..|+.+-+..+++
T Consensus 143 pL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 143 PLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHh
Confidence 3444456677665555444
No 362
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=28.04 E-value=2.3e+02 Score=22.64 Aligned_cols=146 Identities=8% Similarity=-0.005 Sum_probs=73.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCcc----cHH----HHHHHHHHcCCHHHHHHH----HHHHHHhCCCCCCHHHHHHH
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLKA----DLL----DTLTELRRQNELDLALKV----FNFVRKEVWYKPDLSLYSDM 134 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~~----~~~----~ll~~~~~~~~~~~a~~~----~~~m~~~~g~~~~~~~y~~l 134 (250)
++.....|++=+|.+.++....+-+.- +.. .-...+.+.|+..-|-++ .+-.. ..+++++...-+.+
T Consensus 20 l~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~-~~~~~~~~~~~~rl 98 (312)
T 2wpv_A 20 FENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYD-LAEVKVDDISVARL 98 (312)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCCCSHHHHHHH
T ss_pred HHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHH-HcCCCCCHHHHHHH
Confidence 555555666666666666554332111 111 122234456666554443 33343 36777777777777
Q ss_pred HHHHHcCCC-----HHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 025612 135 ILMLGKNKQ-----IAMAEELFCELKKEGL--DPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRN 207 (250)
Q Consensus 135 i~~~~~~~~-----~~~A~~~~~~m~~~g~--~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~ 207 (250)
+..+..... ..-..+....-.+.|- .-|......+-..|.+.|++.+|..- +. .|-.-|...+..++--
T Consensus 99 ~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H---~i-~~~~~s~~~~a~~l~~ 174 (312)
T 2wpv_A 99 VRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERY---FM-LGTHDSMIKYVDLLWD 174 (312)
T ss_dssp HHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH---HH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHH---HH-hCCCccHHHHHHHHHH
Confidence 777665332 1222333333333321 23556666777777777777665532 22 2221135555555555
Q ss_pred HHhc---CCHHHH
Q 025612 208 LENA---GEEELV 217 (250)
Q Consensus 208 ~~~~---g~~~~a 217 (250)
+... |...++
T Consensus 175 w~~~~~~~~~~e~ 187 (312)
T 2wpv_A 175 WLCQVDDIEDSTV 187 (312)
T ss_dssp HHHHTTCCCHHHH
T ss_pred HHHhcCCCCcchH
Confidence 5554 555444
No 363
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.93 E-value=2.7e+02 Score=23.35 Aligned_cols=164 Identities=15% Similarity=0.099 Sum_probs=105.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH-hcCcccHH-HHHHHHH----HcCCHHH--HHHHHHHHH--HhCCCCC---CHH
Q 025612 63 AIQAVHAMKLAKSSSKLEEGFQSRIC-RLLKADLL-DTLTELR----RQNELDL--ALKVFNFVR--KEVWYKP---DLS 129 (250)
Q Consensus 63 ~~~ll~~~~~~~~~~~a~~l~~~m~~-~~~~~~~~-~ll~~~~----~~~~~~~--a~~~~~~m~--~~~g~~~---~~~ 129 (250)
...++..|...++++...+.+.-+.+ +|..+... .+++.+. .....+. -..+.+... ....+-. -..
T Consensus 59 l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erar 138 (445)
T 4b4t_P 59 LAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERAR 138 (445)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 44568888899999998888877653 44433333 4554443 2333222 222222211 0111112 134
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHh--CCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCH--
Q 025612 130 LYSDMILMLGKNKQIAMAEELFCELKK--EGLDPD---TRVYTEMIGVYLQVGMIDKAMETYETMKA----SGCTPHK-- 198 (250)
Q Consensus 130 ~y~~li~~~~~~~~~~~A~~~~~~m~~--~g~~p~---~~ty~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~-- 198 (250)
....|.+.|-..|++.+|.+++.++.. .|.... ...|...++.|...+++.+|..++..... ....|+.
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 456788889999999999999999854 233222 34677788999999999999999998753 2222332
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025612 199 LTFTILIRNLENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 199 ~ty~~li~~~~~~g~~~~a~~~~~~m~~ 226 (250)
.-|...+..+...+++..|.+.|.+.-+
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4567778888888999998888777653
No 364
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=27.88 E-value=4.3e+02 Score=25.74 Aligned_cols=85 Identities=14% Similarity=0.125 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHC-CCCCCHHH---H-----------------
Q 025612 144 IAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI-DKAMETYETMKAS-GCTPHKLT---F----------------- 201 (250)
Q Consensus 144 ~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~-~~a~~~~~~m~~~-g~~p~~~t---y----------------- 201 (250)
..+|..+=.-|-++...-=......++.++.++|-. +.|.++|+.|... +.-.|..+ |
T Consensus 759 lgeAD~LRRAMgKK~~~~m~~~r~~F~~g~~~~G~~~~~a~~ifd~i~~Fa~YgFnKSHAaAYa~laYqtAyLK~hyP~e 838 (1220)
T 2hpi_A 759 LGEADLLRRAMGKKRVEEMQKHRERFVRGAKERGVPEEEANRLFDMLEAFANYGFNKSHAAAYSLLSYQTAYVKAHYPVE 838 (1220)
T ss_dssp HHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHTTSCBCHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred chHHHHHHHhhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHhCHHH
Confidence 345555555565543322234456778888888754 4688899998653 43344322 2
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 025612 202 --TILIRNLENAGEEELVAAVRRDCIQYVEF 230 (250)
Q Consensus 202 --~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 230 (250)
.++++. ..|+.+....+++++++.|+.
T Consensus 839 F~aAlLt~--~~~~~~k~~~~i~ear~~Gi~ 867 (1220)
T 2hpi_A 839 FMAALLSV--ERHDSDKVAEYIRDARALGIP 867 (1220)
T ss_dssp HHHHHHHH--TTTCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHhHh--hcCCchHHHHHHHHHHHCCCe
Confidence 222222 257888999999999999986
No 365
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=27.63 E-value=86 Score=21.14 Aligned_cols=33 Identities=9% Similarity=0.115 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 025612 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLG 139 (250)
Q Consensus 107 ~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~ 139 (250)
.+++|.+.+..|++.....-.+..||..|..+-
T Consensus 42 ~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk 74 (120)
T 1q2z_A 42 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQ 74 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 456666666666543322234566777666553
No 366
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=27.48 E-value=91 Score=21.48 Aligned_cols=146 Identities=10% Similarity=0.050 Sum_probs=75.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCcccHH--HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHcCC
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLKADLL--DTLTELRRQNELDLALKVFNFVRKEVWYKPDL--SLYSDMILMLGKNK 142 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~--~~y~~li~~~~~~~ 142 (250)
+...+..|+.+.+..+++.-...-...+.. +.+...+..|+.+-+..+++. |..++. ....+.+...+..|
T Consensus 6 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----g~~~~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-----GADPHILAKERESALSLASTGG 80 (172)
T ss_dssp HHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-----TCCTTCCCTTCCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHc-----CCCchhhcccCCCHHHHHHHCC
Confidence 455667788776666665421100011211 456666788888766655543 333321 11234455666777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHH
Q 025612 143 QIAMAEELFCELKKEGLDPDTR---VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT--FTILIRNLENAGEEELV 217 (250)
Q Consensus 143 ~~~~A~~~~~~m~~~g~~p~~~---ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--y~~li~~~~~~g~~~~a 217 (250)
+.+-+. .+.+.|..++.. -++.|.. .+..|..+-+. .+.+.|..++... -.+-+...+..|+.+-+
T Consensus 81 ~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~~v~----~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~ 151 (172)
T 3v30_A 81 YTDIVG----LLLERDVDINIYDWNGGTPLLY-AVRGNHVKCVE----ALLARGADLTTEADSGYTPMDLAVALGYRKVQ 151 (172)
T ss_dssp CHHHHH----HHHTTTCCTTCCCTTSCCHHHH-HHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred CHHHHH----HHHHcCCCCCCCCCCCCCHHHH-HHHcCCHHHHH----HHHHcCCCccccCCCCCCHHHHHHHhCcHHHH
Confidence 765444 444556655432 2334433 34557665443 4445565554321 12344555666777777
Q ss_pred HHHHHHHHh
Q 025612 218 AAVRRDCIQ 226 (250)
Q Consensus 218 ~~~~~~m~~ 226 (250)
.-+++...+
T Consensus 152 ~~L~~~~~~ 160 (172)
T 3v30_A 152 QVIENHILK 160 (172)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766666544
No 367
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=27.47 E-value=1.7e+02 Score=21.02 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 025612 107 ELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD 162 (250)
Q Consensus 107 ~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 162 (250)
..+.+..+.+.+. +.|+.-|..--.+.++...+.|.+ ....+-.++..+|+.++
T Consensus 48 ~~~~ie~vl~~L~-~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~~~ 101 (177)
T 3e3v_A 48 HEDYISEIINKLI-DLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGIDDN 101 (177)
T ss_dssp CHHHHHHHHHHHH-HTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCCHH
T ss_pred CHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCCHH
Confidence 3456677777775 367665555556666666654443 23556677777777543
No 368
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=27.43 E-value=2.8e+02 Score=23.33 Aligned_cols=32 Identities=6% Similarity=-0.142 Sum_probs=26.0
Q ss_pred hcCCHHHHHHHHHHHHhccCCchHHHHHHHHh
Q 025612 210 NAGEEELVAAVRRDCIQYVEFPERFLEEVYQK 241 (250)
Q Consensus 210 ~~g~~~~a~~~~~~m~~~g~~pd~~~~~~~~~ 241 (250)
+.++.+.|..++..|.+.|..|..+...+.+.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~ 298 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAI 298 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 56799999999999999999998766655443
No 369
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=27.26 E-value=81 Score=22.95 Aligned_cols=130 Identities=15% Similarity=0.035 Sum_probs=69.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCcccHH-----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHH
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLKADLL-----DTLTELRRQNELDLALKVFNFVRKEVWYKPDL---SLYSDMILML 138 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~---~~y~~li~~~ 138 (250)
+...++.|+.+.+..++ +.|..++.. +.+...++.|+.+-+..+++ .|..++. ..-.+.+...
T Consensus 13 l~~A~~~g~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-----~~~~~~~~~~~~~~t~L~~A 83 (240)
T 3eu9_A 13 IVKATQYGIYERCRELV----EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYIS-----KGAIVDQLGGDLNSTPLHWA 83 (240)
T ss_dssp HHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-----TTCCTTCCBTTTTBCHHHHH
T ss_pred HHHHHHcCChHHHHHHH----HcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHH-----cCCcchhhcCCcCCChhHHH
Confidence 45566778865555444 456554332 57888888999876655554 3332221 1123455556
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcC
Q 025612 139 GKNKQIAMAEELFCELKKEGLDPDT---RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHK---LTFTILIRNLENAG 212 (250)
Q Consensus 139 ~~~~~~~~A~~~~~~m~~~g~~p~~---~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~ty~~li~~~~~~g 212 (250)
+..|+.+-+ +.+.+.|..++. ..++.+ ...+..|..+ +++.+.+.|..++. .-.+.+..+..+.+
T Consensus 84 ~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~----~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~ 154 (240)
T 3eu9_A 84 TRQGHLSMV----VQLMKYGADPSLIDGEGCSCI-HLAAQFGHTS----IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH 154 (240)
T ss_dssp HHHTCHHHH----HHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCC
T ss_pred HHcCCHHHH----HHHHHcCCCCcccCCCCCCHH-HHHHHcCHHH----HHHHHHhcCCCccccCCCCCcHHHHHHHhCC
Confidence 666776544 444455665543 223333 3445567765 44455556665543 33345555554444
Q ss_pred CH
Q 025612 213 EE 214 (250)
Q Consensus 213 ~~ 214 (250)
..
T Consensus 155 ~~ 156 (240)
T 3eu9_A 155 SV 156 (240)
T ss_dssp SS
T ss_pred hH
Confidence 33
No 370
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=27.13 E-value=1.8e+02 Score=22.93 Aligned_cols=45 Identities=7% Similarity=0.075 Sum_probs=37.1
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 025612 150 LFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGC 194 (250)
Q Consensus 150 ~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~ 194 (250)
+++.+.+.|+.|..+++.-++..|++.=.++.+.++|+.+...|.
T Consensus 176 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~ 220 (310)
T 3hzj_A 176 LHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGL 220 (310)
T ss_dssp HHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCc
Confidence 555666778889888889899888887778999999998888774
No 371
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=26.84 E-value=1.8e+02 Score=20.89 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCchHHHH
Q 025612 180 DKAMETYETMKASGCTPHK-LTFTILIRNLENAGEEELVAAVRRDCIQYVEFPERFLE 236 (250)
Q Consensus 180 ~~a~~~~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~pd~~~~ 236 (250)
++..++|..|...||--.. .-|...-..+-..|++.+|.+||+.-.+.+-.|-..+.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~ 134 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQ 134 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 3366677777777665443 34555566666777888888888877777777754443
No 372
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=26.09 E-value=76 Score=23.26 Aligned_cols=44 Identities=18% Similarity=0.080 Sum_probs=19.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCcccHH-----HHHHHHHHcCCHHHHHHH
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLKADLL-----DTLTELRRQNELDLALKV 114 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~ 114 (250)
+...+..|+.+-+. .+.+.|..++.. +.+...+..|+.+.+..+
T Consensus 15 L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 63 (237)
T 3b7b_A 15 LHAAAEAGHVDICH----MLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL 63 (237)
T ss_dssp HHHHHHHTCHHHHH----HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHcCcHHHHH----HHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHH
Confidence 44455556644333 333344433221 344555556665544333
No 373
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=24.45 E-value=2.3e+02 Score=21.48 Aligned_cols=22 Identities=9% Similarity=0.129 Sum_probs=12.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 025612 170 IGVYLQVGMIDKAMETYETMKA 191 (250)
Q Consensus 170 i~~~~~~g~~~~a~~~~~~m~~ 191 (250)
+..|.+.|.+++|.+++++...
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHhcchHHHHHHHHHHhc
Confidence 3345555556666655555544
No 374
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=24.11 E-value=2.2e+02 Score=21.15 Aligned_cols=61 Identities=16% Similarity=0.157 Sum_probs=41.8
Q ss_pred HHHHH---HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-----HHHHHHHHHHHHCCC
Q 025612 134 MILML---GKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI-----DKAMETYETMKASGC 194 (250)
Q Consensus 134 li~~~---~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~-----~~a~~~~~~m~~~g~ 194 (250)
+|+++ .|..+++.|+-.+.+|.+.|..|..+.=-.++-+.-..|.. ..|...++....-|.
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 78 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA 78 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCC
Confidence 45555 35688899999999999988888777777777776666653 334445555555554
No 375
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=23.82 E-value=2.8e+02 Score=22.09 Aligned_cols=72 Identities=15% Similarity=0.245 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhccCC-chHHHHH
Q 025612 165 VYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE--EELVAAVRRDCIQYVEF-PERFLEE 237 (250)
Q Consensus 165 ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~--~~~a~~~~~~m~~~g~~-pd~~~~~ 237 (250)
..+.+|.=|...|+.++|.+.++++..-.+.+ ...+..+..++-+.++ .+.+.+++..+.+.|+. ++.+..-
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~G 242 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRG 242 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 36788999999999999999999986422222 2344455555555433 56678888888877665 5544433
No 376
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=23.68 E-value=4.7e+02 Score=24.72 Aligned_cols=54 Identities=6% Similarity=0.017 Sum_probs=23.8
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 025612 137 MLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA 191 (250)
Q Consensus 137 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 191 (250)
+|+-.|+.....+++..+.+.. ..+......+--++...|+.+.+.++++.+.+
T Consensus 569 AyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~ 622 (963)
T 4ady_A 569 AYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK 622 (963)
T ss_dssp HTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG
T ss_pred HhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh
Confidence 3445556555555666655431 11222222222233334555555555544443
No 377
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=23.50 E-value=4e+02 Score=23.87 Aligned_cols=32 Identities=19% Similarity=-0.041 Sum_probs=17.4
Q ss_pred HHHHHHHHHHH-----HcCCCHHHHHHHHHHHHhCCCCCC
Q 025612 128 LSLYSDMILML-----GKNKQIAMAEELFCELKKEGLDPD 162 (250)
Q Consensus 128 ~~~y~~li~~~-----~~~~~~~~A~~~~~~m~~~g~~p~ 162 (250)
..|+..|++.. ...|+++.|.+.++++ ++-|.
T Consensus 533 ~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L---~llPl 569 (661)
T 2qx5_A 533 KEICMLLLNISSIRELYFNKQWQETLSQMELL---DLLPF 569 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT---SCSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCC
Confidence 44555554432 4667777776555553 35554
No 378
>1b79_A DNAB helicase; hexamer, DNA replication, hydrolase; 2.30A {Escherichia coli} SCOP: a.81.1.1 PDB: 1jwe_A
Probab=23.21 E-value=1.7e+02 Score=19.44 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=11.2
Q ss_pred HhcCcccHHHHHHHHHHcCCHHH
Q 025612 88 CRLLKADLLDTLTELRRQNELDL 110 (250)
Q Consensus 88 ~~~~~~~~~~ll~~~~~~~~~~~ 110 (250)
+.|.+.|..++...+.+.|.+++
T Consensus 67 ~~g~piD~vtv~~~L~~~~~l~~ 89 (119)
T 1b79_A 67 ESGSPIDLITLAESLERQGQLDS 89 (119)
T ss_dssp HTTCCCSHHHHHHHHHTTTTHHH
T ss_pred HcCCCCCHHHHHHHHhccCchhh
Confidence 34444455555555555554444
No 379
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=23.09 E-value=1.4e+02 Score=18.30 Aligned_cols=43 Identities=19% Similarity=0.317 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 025612 144 IAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCT 195 (250)
Q Consensus 144 ~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 195 (250)
+++|.++.-+-... + .++|+--.+.| +.+|-+++++|.+.|+.
T Consensus 12 y~~A~~~V~~~~~a----S----~S~lQR~lrIG-YnRAArlid~lE~~GiV 54 (73)
T 2ve8_A 12 YDEAVRFVTESRRA----S----ISAVQRKLKIG-YNRAARMIEAMEMAGVV 54 (73)
T ss_dssp HHHHHHHHHHHCCC----C----HHHHHHHHTCC-HHHHHHHHHHHHHTTSB
T ss_pred HHHHHHHHHhcCCc----c----HHHHHHHHccC-hHHHHHHHHHHHHCCcC
Confidence 56666666554321 1 46777777777 78888899999888763
No 380
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=23.06 E-value=3.4e+02 Score=22.80 Aligned_cols=56 Identities=16% Similarity=0.105 Sum_probs=36.7
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhccCC
Q 025612 175 QVGMIDKAMETYETMKASGCTPHKLTFTILIRNLENAGE-----EELVAAVRRDCIQYVEF 230 (250)
Q Consensus 175 ~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~-----~~~a~~~~~~m~~~g~~ 230 (250)
+.++.+.|+..+.+|.+.|..|....=..++.+.-.-|. ...|...++....-|.+
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~p 327 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPA 327 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCCc
Confidence 457899999999999999988776665555555544443 33344445555555544
No 381
>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31
Probab=22.81 E-value=1.7e+02 Score=19.14 Aligned_cols=34 Identities=9% Similarity=0.040 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHCCC
Q 025612 161 PDTRVYTEMIGVYLQVG----MIDKAMETYETMKASGC 194 (250)
Q Consensus 161 p~~~ty~~li~~~~~~g----~~~~a~~~~~~m~~~g~ 194 (250)
|+.++=+-++.-+...+ +-++|..+.+.|.+.|+
T Consensus 48 ~~~F~G~dlVdWL~~~~~~~~~r~eAv~lg~~Ll~~G~ 85 (105)
T 1fsh_A 48 ANAVIGADVVDWLYTHVEGFKERREARKYASSMLKHGF 85 (105)
T ss_dssp SSCCHHHHHHHHHHHHCCCCSSHHHHHHHHHHHHHTTT
T ss_pred CceeEcHHHHHHHHHhCcCCCCHHHHHHHHHHHHHCCc
Confidence 55566566666555543 34667777777776654
No 382
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=22.55 E-value=1e+02 Score=21.01 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 025612 131 YSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMET 185 (250)
Q Consensus 131 y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~ 185 (250)
|--.|...+..++.+-|+++++...+.| +...|.+++-.|...=++|-++++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 3344555566666677777777766655 566666666666665555555543
No 383
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=22.08 E-value=2.4e+02 Score=23.23 Aligned_cols=63 Identities=10% Similarity=0.077 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHcCCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 025612 128 LSLYSDMILMLGKNKQ--IAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMIDKAMETYETMKA 191 (250)
Q Consensus 128 ~~~y~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~ 191 (250)
..||..+|+-+...++ .++|..+++.+.+- -.++...=.-|+..+.|--..+|...+.+-|++
T Consensus 23 ~~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~G-~~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~ 87 (377)
T 3r88_A 23 VPSWPQILGRLTDNRDLARGQAAWAMDQIMTG-NARPAQIAAFAVAMTMKAPTADEVGELAGVMLS 87 (377)
T ss_dssp -CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 3457777777766554 45677777776553 233333333344444444456666666666654
No 384
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=22.01 E-value=1.7e+02 Score=19.80 Aligned_cols=142 Identities=11% Similarity=0.041 Sum_probs=74.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCcccHH-----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLKADLL-----DTLTELRRQNELDLALKVFNFVRKEVWYKPDLS--LYSDMILMLG 139 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~~--~y~~li~~~~ 139 (250)
+...+..|+.+.+..+++. +..++.. +.+...+..|+.+-+..+++ .|..++.. .-.+.+...+
T Consensus 7 L~~A~~~g~~~~v~~ll~~----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-----~g~~~~~~~~~g~t~L~~A~ 77 (167)
T 3v31_A 7 VHQLAAQGEMLYLATRIEQ----ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-----NGADPQLLGKGRESALSLAC 77 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHH----SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-----TTCCTTCCCTTCCCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHc----CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHH-----cCCCCCCcCCCCCcHHHHHH
Confidence 5556677886666666544 4332221 46666677788765554443 34443321 1124455556
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCH
Q 025612 140 KNKQIAMAEELFCELKKEGLDPDT---RVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT--FTILIRNLENAGEE 214 (250)
Q Consensus 140 ~~~~~~~A~~~~~~m~~~g~~p~~---~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--y~~li~~~~~~g~~ 214 (250)
..|+.+-+..++ +.|..++. .-++.|.. .+..|..+-+. .+.+.|..|+... -.+-+...++.|+.
T Consensus 78 ~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~-A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 148 (167)
T 3v31_A 78 SKGYTDIVKMLL----DCGVDVNEYDWNGGTPLLY-AVHGNHVKCVK----MLLESGADPTIETDSGYNSMDLAVALGYR 148 (167)
T ss_dssp HHTCHHHHHHHH----HHTCCTTCCCTTSCCHHHH-HHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred HcCCHHHHHHHH----HCCCCCCcCCCCCCCHHHH-HHHcCCHHHHH----HHHHcCCCCCCcCCCCCCHHHHHHHcCcH
Confidence 667766544444 34544442 22334433 34556665443 4445565554321 12345555677788
Q ss_pred HHHHHHHHHHHh
Q 025612 215 ELVAAVRRDCIQ 226 (250)
Q Consensus 215 ~~a~~~~~~m~~ 226 (250)
+-+.-+.+...+
T Consensus 149 ~~~~~L~~~~~~ 160 (167)
T 3v31_A 149 SVQQVIESHLLK 160 (167)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777666554
No 385
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=21.73 E-value=3e+02 Score=21.72 Aligned_cols=41 Identities=2% Similarity=-0.050 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-ccCCchHHHHHHHHh
Q 025612 200 TFTILIRNLENAGEEELVAAVRRDCIQ-YVEFPERFLEEVYQK 241 (250)
Q Consensus 200 ty~~li~~~~~~g~~~~a~~~~~~m~~-~g~~pd~~~~~~~~~ 241 (250)
....++++... ++++.|..++.++.. .|..|..++..+...
T Consensus 243 ~i~~l~~~i~~-~~~~~al~~l~~l~~~~g~~~~~i~~~l~~~ 284 (340)
T 1sxj_C 243 DLKAVLKSILE-DDWGTAHYTLNKVRSAKGLALIDLIEGIVKI 284 (340)
T ss_dssp HHHHHHHHHHT-SCHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33444454443 677788888887776 777777666665543
No 386
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=21.70 E-value=44 Score=25.13 Aligned_cols=118 Identities=8% Similarity=-0.072 Sum_probs=63.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHcC---CCHHHHHHHHHHHHhCCCC-------
Q 025612 98 TLTELRRQNELDLALKVFNFVRKEVWYKPDL-------SLYSDMILMLGKN---KQIAMAEELFCELKKEGLD------- 160 (250)
Q Consensus 98 ll~~~~~~~~~~~a~~~~~~m~~~~g~~~~~-------~~y~~li~~~~~~---~~~~~A~~~~~~m~~~g~~------- 160 (250)
.|...++.|+.+....+++.+.+ .|..++. .-++. +...+.. |+.+-+..+++.-...+..
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~-~g~~i~~~~~~~d~~g~t~-L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 82 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRW-NSKYLTDSAYTEGSTGKTC-LMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQ 82 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHH-HTCCTTSGGGSBTTTTBCH-HHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-cCCCcccccccCCCCCCCH-HHHHHHccccchHHHHHHHHhcCCcccchhhhcccc
Confidence 34556678888877777777653 5554443 33344 4444445 7777777676654332211
Q ss_pred ---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH---------------HHHHHHHHHhcCCHHHHHHHHH
Q 025612 161 ---PDTRVYTEMIGVYLQVGMIDKAMETYETMKASGCTPHKLT---------------FTILIRNLENAGEEELVAAVRR 222 (250)
Q Consensus 161 ---p~~~ty~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t---------------y~~li~~~~~~g~~~~a~~~~~ 222 (250)
.|..-++.|..+ +..|..+-+. .+.+.|..++... -.+.+...+..|+.+-+.-+++
T Consensus 83 ~~~~d~~g~t~L~~A-~~~g~~~~v~----~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 83 CTDEFYQGHSALHIA-IEKRSLQCVK----LLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp CCSTTTTTCCHHHHH-HHTTCHHHHH----HHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccCCCHHHHH-HHcCCHHHHH----HHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 122334444444 5567765444 4445566554432 1234445556778766655554
No 387
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=21.68 E-value=1.5e+02 Score=24.21 Aligned_cols=46 Identities=11% Similarity=0.112 Sum_probs=24.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCcccHH-----HHHHHHHHcCCHHHHHHHHH
Q 025612 67 VHAMKLAKSSSKLEEGFQSRICRLLKADLL-----DTLTELRRQNELDLALKVFN 116 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~ 116 (250)
+...+..|+.+-+..++ +.|..++.. +.+...+..|+.+-+..+.+
T Consensus 18 L~~Aa~~g~~~~v~~Ll----~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 68 (437)
T 1n11_A 18 LHVASFMGHLPIVKNLL----QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ 68 (437)
T ss_dssp HHHHHHHTCHHHHHHHH----HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 55556667755444443 345544332 35555566666665554443
No 388
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=21.67 E-value=2.6e+02 Score=20.90 Aligned_cols=61 Identities=15% Similarity=0.195 Sum_probs=41.3
Q ss_pred HHHHH---HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-----HHHHHHHHHHHHCCCC
Q 025612 134 MILML---GKNKQIAMAEELFCELKKEGLDPDTRVYTEMIGVYLQVGMI-----DKAMETYETMKASGCT 195 (250)
Q Consensus 134 li~~~---~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~-----~~a~~~~~~m~~~g~~ 195 (250)
+|+++ .|..+++.|+-.+.+|.+.| .|..+.=-.++.+.-..|.. ..|...++....-|..
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 44554 35678888888888998888 77777767777777666653 3444555555555653
No 389
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=21.65 E-value=1.9e+02 Score=19.32 Aligned_cols=18 Identities=6% Similarity=-0.057 Sum_probs=8.8
Q ss_pred HHHHHhcCChhHHHHHHH
Q 025612 67 VHAMKLAKSSSKLEEGFQ 84 (250)
Q Consensus 67 l~~~~~~~~~~~a~~l~~ 84 (250)
+...++.|+.+.+..+++
T Consensus 6 L~~A~~~g~~~~v~~Ll~ 23 (153)
T 1awc_B 6 LLEAARAGQDDEVRILMA 23 (153)
T ss_dssp HHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 334445566555544444
No 390
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=21.59 E-value=26 Score=25.71 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=7.8
Q ss_pred HHHHhcCChhHHHHHHH
Q 025612 68 HAMKLAKSSSKLEEGFQ 84 (250)
Q Consensus 68 ~~~~~~~~~~~a~~l~~ 84 (250)
...++.|+.+.+..+++
T Consensus 7 ~~A~~~g~~~~v~~Ll~ 23 (228)
T 2dzn_A 7 HQACMENEFFKVQELLH 23 (228)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHh
Confidence 33444555444444443
No 391
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=21.47 E-value=3.4e+02 Score=22.34 Aligned_cols=93 Identities=9% Similarity=-0.048 Sum_probs=57.2
Q ss_pred HHHHHHHHcCC---HHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 025612 97 DTLTELRRQNE---LDLALKVFNFVRKEV---WYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPDTRVYTEMI 170 (250)
Q Consensus 97 ~ll~~~~~~~~---~~~a~~~~~~m~~~~---g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ty~~li 170 (250)
.++...|..|+ .+.|.+.|+...... .+.||... .+...-.+ ..++-..+++..... .+..-=+.++
T Consensus 202 ~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~--~Vy~~~~~--~~~~~~~l~~~y~~s---~~~~ek~~ll 274 (419)
T 3rjo_A 202 QLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTL--AVFAVGAQ--STEGWDFLYSKYQFS---LSSTEKSQIE 274 (419)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHH--HHHHHHTT--SHHHHHHHHHHHHHC---CCHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcce--eEEeeeeC--CHHHHHHHHHHHhcC---CCHHHHHHHH
Confidence 36777777776 567888888765422 25565322 11111122 234445556666554 3566677888
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCC-CC
Q 025612 171 GVYLQVGMIDKAMETYETMKASGC-TP 196 (250)
Q Consensus 171 ~~~~~~g~~~~a~~~~~~m~~~g~-~p 196 (250)
.+++...+.....++++......+ ++
T Consensus 275 ~aL~~s~d~~ll~~~L~~~l~~~~ir~ 301 (419)
T 3rjo_A 275 FALCRTQNKEKLQWLLDESFKGDKIKT 301 (419)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHTSSSCG
T ss_pred HHcCCCCCHHHHHHHHHHHhCCCCCch
Confidence 888888888888888888776553 44
No 392
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=20.46 E-value=73 Score=21.04 Aligned_cols=18 Identities=6% Similarity=0.030 Sum_probs=8.8
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 025612 209 ENAGEEELVAAVRRDCIQ 226 (250)
Q Consensus 209 ~~~g~~~~a~~~~~~m~~ 226 (250)
++.|++++|.+.+++-.+
T Consensus 31 Ak~g~fe~A~~~l~eA~~ 48 (105)
T 2e2a_A 31 AENGDFAKADSLVVEAGS 48 (105)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 345555555555544433
No 393
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=20.34 E-value=2.6e+02 Score=20.57 Aligned_cols=80 Identities=14% Similarity=0.110 Sum_probs=53.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-----------------HH
Q 025612 102 LRRQNELDLALKVFNFVRKEVWYKPDLSLYSDMILMLGKNKQIAMAEELFCELKKEGLDPD-----------------TR 164 (250)
Q Consensus 102 ~~~~~~~~~a~~~~~~m~~~~g~~~~~~~y~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-----------------~~ 164 (250)
+.-+|.+..++-++...- ..+..-|-.| +|-+..++..|...++...+..+..| .+
T Consensus 43 LyyngEY~R~Lf~L~~lN-----T~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEf 115 (242)
T 3kae_A 43 LYLNGEYTRALFHLHKLN-----TCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEF 115 (242)
T ss_dssp HHHTTCHHHHHHHHHTCC-----BHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHH
T ss_pred hhhcchHhHHHHHHHhcc-----hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHH
Confidence 345677777765554331 1122223333 45678899999999999886655422 35
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH
Q 025612 165 VYTEMIGVYLQVGMIDKAMETYET 188 (250)
Q Consensus 165 ty~~li~~~~~~g~~~~a~~~~~~ 188 (250)
.|+-+-.-|...|+.++|...|..
T Consensus 116 Fy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 116 FESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHhhhHhhh
Confidence 577777888889999999988764
Done!