BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025613
(250 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GQV|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 From
Arabidopsis Thaliana
Length = 166
Score = 290 bits (743), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 143/170 (84%), Positives = 155/170 (91%), Gaps = 5/170 (2%)
Query: 80 SGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSD 139
SGVYTVG+FMT KE+LHVVKPTTTVDEA LE+LVE RITGFPVID+DWKLVGLVSD
Sbjct: 2 SGVYTVGEFMTKKEDLHVVKPTTTVDEA-----LELLVENRITGFPVIDEDWKLVGLVSD 56
Query: 140 YDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETT 199
YDLLALDSISGSGR +NSMFPEVDSTWKTFN VQKLLSKTNGK+VGDLMTPAP+VV E T
Sbjct: 57 YDLLALDSISGSGRTENSMFPEVDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKT 116
Query: 200 NLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATEMGA 249
NLEDAA++LLETKYRRLPVVD+DGKLVGIITRGNVVRAALQIK + + A
Sbjct: 117 NLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKRSGDRNA 166
>pdb|3SL7|A Chain A, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
pdb|3SL7|B Chain B, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
Length = 180
Score = 251 bits (642), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 120/164 (73%), Positives = 145/164 (88%), Gaps = 5/164 (3%)
Query: 83 YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDL 142
YTVGDF T ++ LHVVKP+T+VD+A LE+LVEK++TG PVIDD+W LVG+VSDYDL
Sbjct: 4 YTVGDFXTPRQNLHVVKPSTSVDDA-----LELLVEKKVTGLPVIDDNWTLVGVVSDYDL 58
Query: 143 LALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLE 202
LALDSISG + D ++FP+VDSTWKTFNE+QKL+SKT GK+VGDL TP+P+VVR++TNLE
Sbjct: 59 LALDSISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLXTPSPLVVRDSTNLE 118
Query: 203 DAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATE 246
DAARLLLETK+RRLPVVDADGKL+GI+TRGNVVRAALQIK +
Sbjct: 119 DAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKRNAD 162
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL--AL------ 145
+L P D + A +L+E + PV+D D KL+G+++ +++ AL
Sbjct: 102 DLXTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKRNA 161
Query: 146 DSISGSGRADNSMFPEVDS 164
DSISG + D ++FP+VDS
Sbjct: 162 DSISGRSQNDTNLFPDVDS 180
>pdb|4GQW|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop
Deletion) From Arabidopsis Thaliana
Length = 152
Score = 251 bits (640), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 130/170 (76%), Positives = 141/170 (82%), Gaps = 19/170 (11%)
Query: 80 SGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSD 139
SGVYTVG+FMT KE+LHVVKPTTTVDEA LE+LVE RITGFPVID+DWKLVGLVSD
Sbjct: 2 SGVYTVGEFMTKKEDLHVVKPTTTVDEA-----LELLVENRITGFPVIDEDWKLVGLVSD 56
Query: 140 YDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETT 199
YDLLALDS DSTWKTFN VQKLLSKTNGK+VGDLMTPAP+VV E T
Sbjct: 57 YDLLALDS--------------GDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKT 102
Query: 200 NLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATEMGA 249
NLEDAA++LLETKYRRLPVVD+DGKLVGIITRGNVVRAALQIK + + A
Sbjct: 103 NLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKRSGDRNA 152
>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CU0|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 42/144 (29%)
Query: 93 EELHVVKPTTTVDEAFVPTALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSISGS 151
E++ + P TVD A L+EK I G PV++D+ K+VG+++ D+ A +
Sbjct: 101 EDVITIAPDETVDFAL------FLMEKHGIDGLPVVEDE-KVVGIITKKDIAARE----- 148
Query: 152 GRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLET 211
GK+V +LMT + V E+ +E+A ++++E
Sbjct: 149 -----------------------------GKLVKELMTKEVITVPESIEVEEALKIMIEN 179
Query: 212 KYRRLPVVDADGKLVGIITRGNVV 235
+ RLPVVD GKLVG+IT ++V
Sbjct: 180 RIDRLPVVDERGKLVGLITMSDLV 203
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 99 KPTTTVDEAF-VPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 157
K TV E+ V AL+I++E RI PV+D+ KLVGL++ DL+A + R +N
Sbjct: 158 KEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKKYKNAVRDENG 217
>pdb|2YZQ|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
Length = 282
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 33/125 (26%)
Query: 112 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNE 171
ALE+ + ++ FPV++ + KLVG++S
Sbjct: 23 ALELFKKYKVRSFPVVNKEGKLVGIIS--------------------------------- 49
Query: 172 VQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITR 231
V+++L + + + L+ VV+E L+ AA+L+LE YRR+ VVD+ GK VGI+T
Sbjct: 50 VKRILVNPDEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTV 109
Query: 232 GNVVR 236
G+++R
Sbjct: 110 GDIIR 114
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIIT 230
V +MT PV + A L + K R PVV+ +GKLVGII+
Sbjct: 3 VKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIIS 49
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 5/124 (4%)
Query: 123 GFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTN-- 180
PV+D + LVG+V + DLL DS + + W + L K
Sbjct: 159 ALPVVDSEGNLVGIVDETDLLR-DSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQ 217
Query: 181 --GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 238
K V ++MT +V + + A + + +LPV+ +G L+G+I ++++
Sbjct: 218 LPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVL 277
Query: 239 LQIK 242
++ K
Sbjct: 278 VKSK 281
>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
pdb|1VRD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
Length = 494
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 34/136 (25%)
Query: 97 VVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN 156
+ P T + V A++++ E +I G PV+D++ +LVGL+++ D+
Sbjct: 102 IYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDV-------------- 147
Query: 157 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAARLLLETKYR 214
+K LSK + DLMTP +V +LE A +L + +
Sbjct: 148 --------------RFEKNLSKK----IKDLMTPREKLIVAPPDISLEKAKEILHQHRIE 189
Query: 215 RLPVVDADGKLVGIIT 230
+LP+V D KLVG+IT
Sbjct: 190 KLPLVSKDNKLVGLIT 205
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 85 VGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144
+ D MT +E+L V P ++++A EIL + RI P++ D KLVGL++ D+++
Sbjct: 157 IKDLMTPREKLIVAPPDISLEKAK-----EILHQHRIEKLPLVSKDNKLVGLITIKDIMS 211
Query: 145 LDSISGSGRADNSMF---PEVDSTWKTFNEVQKLLS 177
+ + R + V ++ +T V+KL+
Sbjct: 212 VIEHPNAARDEKGRLLVGAAVGTSPETMERVEKLVK 247
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 175 LLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNV 234
++ KT ++ D P+ V +++A L+ E K LPVVD +G+LVG++T +V
Sbjct: 93 IVKKTENGIIYD-----PITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDV 147
>pdb|3KPB|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 122
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 183 MVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 242
+V D+++ P+ ++ +AA++L++ LP+VD GKLVGIIT ++ +A Q K
Sbjct: 2 LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNK 61
Query: 243 HATE 246
E
Sbjct: 62 KTIE 65
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 31/137 (22%)
Query: 100 PTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF 159
P T + A +IL++ I P++D+ KLVG+++ +D
Sbjct: 11 PITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWD------------------ 52
Query: 160 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVV 219
+ K L++ N K + ++MT + E ++ A + + +PVV
Sbjct: 53 ------------IAKALAQ-NKKTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVV 99
Query: 220 DADGKLVGIITRGNVVR 236
D ++VGI+T ++ R
Sbjct: 100 DDYRRVVGIVTSEDISR 116
>pdb|3KPC|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 124
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 183 MVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 242
+V D+++ P+ ++ +AA++L++ LP+VD GKLVGIIT ++ +A Q K
Sbjct: 4 LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNK 63
Query: 243 HATE 246
E
Sbjct: 64 KTIE 67
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 31/137 (22%)
Query: 100 PTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF 159
P T + A +IL++ I P++D+ KLVG+++ +D
Sbjct: 13 PITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWD------------------ 54
Query: 160 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVV 219
+ K L++ N K + ++MT + E ++ A + + +PVV
Sbjct: 55 ------------IAKALAQ-NKKTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVV 101
Query: 220 DADGKLVGIITRGNVVR 236
D ++VGI+T ++ R
Sbjct: 102 DDYRRVVGIVTSEDISR 118
>pdb|3KH5|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk.
pdb|3LFZ|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk
Length = 280
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 72/145 (49%), Gaps = 34/145 (23%)
Query: 92 KEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGS 151
+E + +K +DEA +E + K + G P+++D+ +L+ L+++ D++
Sbjct: 91 EENVITLKENADIDEA-----IETFLTKNVGGAPIVNDENQLISLITERDVIR------- 138
Query: 152 GRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLET 211
++ ++D NEV + D +T +V L+D AR ++
Sbjct: 139 -----ALLDKIDE-----NEV-----------IDDYITRDVIVATPGERLKDVARTMVRN 177
Query: 212 KYRRLPVVDADGKLVGIITRGNVVR 236
+RRLPVV ++G+LVGIIT + ++
Sbjct: 178 GFRRLPVV-SEGRLVGIITSTDFIK 201
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 69/143 (48%), Gaps = 19/143 (13%)
Query: 98 VKPTTTVDEAFVPTALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSISGSGRADN 156
V PTTT+ +A + + E + PV++ + K+VG+++ D++ G G N
Sbjct: 17 VYPTTTIRKALMT-----MNENKYRRLPVVNAGNNKVVGIITSMDIV---DFMGGGSKYN 68
Query: 157 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRL 216
+ + + + L+ N + V ++M + ++E ++++A L
Sbjct: 69 LIREKHERNF---------LAAIN-EPVREIMEENVITLKENADIDEAIETFLTKNVGGA 118
Query: 217 PVVDADGKLVGIITRGNVVRAAL 239
P+V+ + +L+ +IT +V+RA L
Sbjct: 119 PIVNDENQLISLITERDVIRALL 141
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 114 EILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
EI+V I PV+D++ ++ G++++ D+L
Sbjct: 247 EIMVTNDIGALPVVDENLRIKGIITEKDVL 276
>pdb|2YVY|A Chain A, Crystal Structure Of Magnesium Transporter Mgte Cytosolic
Domain, Mg2+ Bound Form
Length = 278
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 235
V ++M P V VR T+ E+ ARL+ + + LPVVD +G+LVGI+T +V+
Sbjct: 201 VAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVL 252
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 131 WKLVGLVSDYDLLAL-DSISGSGRADNSMFPEVDSTW--KTFNEVQKLLSKTNGKMVGDL 187
W+L ++ + L L D++ + D + F + +T EV+ L ++ G L
Sbjct: 82 WRLREILEELSLDDLADALQAVRKEDPAYFQRLKDLLDPRTRAEVEAL-ARYEEDEAGGL 140
Query: 188 MTPAPVVVRETTNLEDAARLL------LETKYRRLPVVDADGKLVGIITRGNVVRA 237
MTP V VRE +E+ R L ET Y + VVD G+L G+++ +++ A
Sbjct: 141 MTPEYVAVREGMTVEEVLRFLRRAAPDAETIY-YIYVVDEKGRLKGVLSLRDLIVA 195
>pdb|2YVX|A Chain A, Crystal Structure Of Magnesium Transporter Mgte
pdb|2YVX|B Chain B, Crystal Structure Of Magnesium Transporter Mgte
pdb|2YVX|C Chain C, Crystal Structure Of Magnesium Transporter Mgte
pdb|2YVX|D Chain D, Crystal Structure Of Magnesium Transporter Mgte
pdb|2ZY9|A Chain A, Improved Crystal Structure Of Magnesium Transporter Mgte
pdb|2ZY9|B Chain B, Improved Crystal Structure Of Magnesium Transporter Mgte
Length = 473
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 235
V ++M P V VR T+ E+ ARL+ + + LPVVD +G+LVGI+T +V+
Sbjct: 221 VAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVL 272
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 131 WKLVGLVSDYDLLAL-DSISGSGRADNSMFPEVDSTW--KTFNEVQKLLSKTNGKMVGDL 187
W+L ++ + L L D++ + D + F + +T EV+ L ++ G L
Sbjct: 102 WRLREILEELSLDDLADALQAVRKEDPAYFQRLKDLLDPRTRAEVEAL-ARYEEDEAGGL 160
Query: 188 MTPAPVVVRETTNLEDAARLL------LETKYRRLPVVDADGKLVGIITRGNVVRA 237
MTP V VRE +E+ R L ET Y + VVD G+L G+++ +++ A
Sbjct: 161 MTPEYVAVREGMTVEEVLRFLRRAAPDAETIY-YIYVVDEKGRLKGVLSLRDLIVA 215
>pdb|2YVZ|A Chain A, Crystal Structure Of Magnesium Transporter Mgte Cytosolic
Domain, Mg2+-Free Form
pdb|2YVZ|B Chain B, Crystal Structure Of Magnesium Transporter Mgte Cytosolic
Domain, Mg2+-Free Form
Length = 278
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 235
V ++ P V VR T+ E+ ARL + + LPVVD +G+LVGI+T +V+
Sbjct: 201 VAEIXNPKVVYVRTDTDQEEVARLXADYDFTVLPVVDEEGRLVGIVTVDDVL 252
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Query: 131 WKLVGLVSDYDLLAL-DSISGSGRADNSMFPEVDSTW--KTFNEVQKLLSKTNGKMVGDL 187
W+L ++ + L L D++ + D + F + +T EV+ L ++ G L
Sbjct: 82 WRLREILEELSLDDLADALQAVRKEDPAYFQRLKDLLDPRTRAEVEAL-ARYEEDEAGGL 140
Query: 188 MTPAPVVVRETTNLEDAARLL------LETKYRRLPVVDADGKLVGIITRGNVVRA 237
TP V VRE +E+ R L ET Y + VVD G+L G+++ +++ A
Sbjct: 141 XTPEYVAVREGXTVEEVLRFLRRAAPDAETIY-YIYVVDEKGRLKGVLSLRDLIVA 195
>pdb|4ESY|B Chain B, Crystal Structure Of The Cbs Domain Of Cbs Domain
Containing Membrane Protein From Sphaerobacter
Thermophilus
Length = 170
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ--I 241
+ D++T V VRE L+ A+ LE + PVVD +G LVGIIT + +R ++ I
Sbjct: 20 IRDILTSPVVTVREDDTLDAVAKTXLEHQIGXAPVVDQNGHLVGIITESDFLRGSIPFWI 79
Query: 242 KHATEM 247
A+E+
Sbjct: 80 YEASEI 85
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 14/119 (11%)
Query: 117 VEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLL 176
+E +I PV+D + LVG++++ D L GS E+ S EV+ L
Sbjct: 45 LEHQIGXAPVVDQNGHLVGIITESDFL-----RGSIPFWIYEASEILSRAIPAPEVEHLF 99
Query: 177 SKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYR----RLPVVDADGKLVGIITR 231
+T K+ + PVV T ED+ + + R R+PVV DG VGI+TR
Sbjct: 100 -ETGRKLTASAVXTQPVV---TAAPEDSVGSIADQXRRHGIHRIPVV-QDGVPVGIVTR 153
>pdb|2O16|A Chain A, Crystal Structure Of A Putative Acetoin Utilization
Protein (Acub) From Vibrio Cholerae
pdb|2O16|B Chain B, Crystal Structure Of A Putative Acetoin Utilization
Protein (Acub) From Vibrio Cholerae
Length = 160
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
V D+MT P + T L DA L+ R +P+VDA+ KL+GI+++ +++ A
Sbjct: 7 VEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAA 60
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 24/123 (19%)
Query: 121 ITGFPVIDDDWKLVGLVSDYDLLALD--SISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 178
I P++D + KL+G+VS DLLA S+ S + D+ F EV
Sbjct: 36 IRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAF------ETPLFEV------ 83
Query: 179 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 238
M D+ + AP L+++A + + K LPVV D LVGIIT + V A
Sbjct: 84 ----MHTDVTSVAP-----QAGLKESAIYMQKHKIGCLPVVAKD-VLVGIITDSDFVTIA 133
Query: 239 LQI 241
+ +
Sbjct: 134 INL 136
>pdb|4ESY|A Chain A, Crystal Structure Of The Cbs Domain Of Cbs Domain
Containing Membrane Protein From Sphaerobacter
Thermophilus
Length = 170
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ--I 241
+ D++T V VRE L+ A+ LE + PVVD +G LVGIIT + +R ++ I
Sbjct: 20 IRDILTSPVVTVREDDTLDAVAKTXLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWI 79
Query: 242 KHATEM 247
A+E+
Sbjct: 80 YEASEI 85
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 14/119 (11%)
Query: 117 VEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLL 176
+E +I PV+D + LVG++++ D L GS E+ S EV+ L
Sbjct: 45 LEHQIGCAPVVDQNGHLVGIITESDFL-----RGSIPFWIYEASEILSRAIPAPEVEHLF 99
Query: 177 SKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYR----RLPVVDADGKLVGIITR 231
+T K+ + PVV T ED+ + + R R+PVV DG VGI+TR
Sbjct: 100 -ETGRKLTASAVXTQPVV---TAAPEDSVGSIADQXRRHGIHRIPVV-QDGVPVGIVTR 153
>pdb|2P9M|A Chain A, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|B Chain B, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|C Chain C, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|D Chain D, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
Length = 138
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 32/138 (23%)
Query: 109 VPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT 168
V A E ++ +I+ PVIDD+ K++G+V+ D+
Sbjct: 27 VVEAFEKXLKYKISSLPVIDDENKVIGIVTTTDI-------------------------G 61
Query: 169 FNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL-----LETKYRRLPVVDADG 223
+N ++ T +GD+ T + + E ++ +A + E +LPVVD +
Sbjct: 62 YNLIRD--KYTLETTIGDVXTKDVITIHEDASILEAIKKXDISGKKEEIINQLPVVDKNN 119
Query: 224 KLVGIITRGNVVRAALQI 241
KLVGII+ G+++R +I
Sbjct: 120 KLVGIISDGDIIRTISKI 137
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
T+GD T +++ + ++ EA + E+ I PV+D + KLVG++SD D++
Sbjct: 74 TIGDVXT--KDVITIHEDASILEAIKKXDISGKKEEIINQLPVVDKNNKLVGIISDGDII 131
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%)
Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 243
V D+ T + + + +A L+ K LPV+D + K++GI+T ++ ++ K+
Sbjct: 10 VKDVXTKNVITAKRHEGVVEAFEKXLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKY 69
Query: 244 ATE 246
E
Sbjct: 70 TLE 72
>pdb|1ZFJ|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh; Ec 1.1.1.205)
From Streptococcus Pyogenes
Length = 491
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 34/152 (22%)
Query: 97 VVKPTTTVDEAFVPTALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSISGSGRA 154
++ P E V A E+ RI+G P+++ + KLVG++++ D
Sbjct: 97 IIDPFFLTPEHKVSEAEELXQRYRISGVPIVETLANRKLVGIITNRD------------- 143
Query: 155 DNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYR 214
+ +S N + + V T+LE A R+L E +
Sbjct: 144 ------------------XRFISDYNAPISEHXTSEHLVTAAVGTDLETAERILHEHRIE 185
Query: 215 RLPVVDADGKLVGIITRGNVVRAALQIKHATE 246
+LP+VD G+L G+IT ++ + ++ HA +
Sbjct: 186 KLPLVDNSGRLSGLITIKDIEK-VIEFPHAAK 216
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 96 HVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDL 142
H+V D + TA IL E RI P++D+ +L GL++ D+
Sbjct: 162 HLVTAAVGTD---LETAERILHEHRIEKLPLVDNSGRLSGLITIKDI 205
>pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSB|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
pdb|3TSD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
Length = 511
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 33/127 (25%)
Query: 106 EAFVPTALEILVEKRITGFPVID--DDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 163
E V A ++ + RI+G PV++ D+ KLVG++++ D+
Sbjct: 129 EHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDM--------------------- 167
Query: 164 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG 223
+Q K + M + + APV T L +A ++L + K +LP+VD +G
Sbjct: 168 ------RFIQDYSIKISDVMTKEQLITAPV----GTTLSEAEKILQKYKIEKLPLVDNNG 217
Query: 224 KLVGIIT 230
L G+IT
Sbjct: 218 VLQGLIT 224
>pdb|1O50|A Chain A, Crystal Structure Of A Cbs Domain-Containing Protein
(Tm0935) From Thermotoga Maritima At 1.87 A Resolution
Length = 157
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 65/130 (50%), Gaps = 13/130 (10%)
Query: 98 VKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 157
+KPT ++ + ++ ++E +T + D KLVG++ LL + G
Sbjct: 24 LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFG----- 78
Query: 158 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 217
P+ + + +++L++K +++ D PV V T LE+A +L+++ + +P
Sbjct: 79 FIPKEELIRSS---MKRLIAKNASEIMLD-----PVYVHMDTPLEEALKLMIDNNIQEMP 130
Query: 218 VVDADGKLVG 227
VVD G++VG
Sbjct: 131 VVDEKGEIVG 140
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 182 KMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 238
K V L++ P VV E T +E+ +LE R V D KLVG+I ++++ +
Sbjct: 16 KDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVS 72
>pdb|2RC3|A Chain A, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|B Chain B, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|C Chain C, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|D Chain D, Crystal Structure Of Cbs Domain, Ne2398
Length = 135
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 165 TWKTFNEVQKLLSK-TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG 223
T + F+ LL K V ++MT V ED L+ E + R LPV+D DG
Sbjct: 56 TERDFSRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DG 114
Query: 224 KLVGIITRGNVVRAAL 239
K++G+++ G++V+ A+
Sbjct: 115 KVIGLLSIGDLVKDAI 130
>pdb|2UV4|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
pdb|2UV5|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 20/129 (15%)
Query: 109 VPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT 168
V AL I V+ R++ PV+D+ ++V + S +D++ L + D S+ +
Sbjct: 40 VYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHY 99
Query: 169 FNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGI 228
F V K + ET LE L+E + RL VVD + + GI
Sbjct: 100 FEGVLKCY------------------LHET--LETIINRLVEAEVHRLVVVDENDVVKGI 139
Query: 229 ITRGNVVRA 237
++ ++++A
Sbjct: 140 VSLSDILQA 148
>pdb|4AF0|B Chain B, Crystal Structure Of Cryptococcal Inosine Monophosphate
Dehydrogenase
Length = 556
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 36/147 (24%)
Query: 93 EELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSIS 149
E + P +A V LEI + G P+ + D KL+G+V+ D+
Sbjct: 141 ENGFITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDV------- 193
Query: 150 GSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLL 209
F + ++ K+ +MT V LE A LL
Sbjct: 194 --------QFQDAETPIKS------------------VMTTEVVTGSSPITLEKANSLLR 227
Query: 210 ETKYRRLPVVDADGKLVGIITRGNVVR 236
ETK +LP+VD++G LV ++ R ++++
Sbjct: 228 ETKKGKLPIVDSNGHLVSLVARSDLLK 254
>pdb|4AF0|A Chain A, Crystal Structure Of Cryptococcal Inosine Monophosphate
Dehydrogenase
Length = 556
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 36/147 (24%)
Query: 93 EELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSIS 149
E + P +A V LEI + G P+ + D KL+G+V+ D+
Sbjct: 141 ENGFITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDV------- 193
Query: 150 GSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLL 209
F + ++ K+ +MT V LE A LL
Sbjct: 194 --------QFQDAETPIKS------------------VMTTEVVTGSSPITLEKANSLLR 227
Query: 210 ETKYRRLPVVDADGKLVGIITRGNVVR 236
ETK +LP+VD++G LV ++ R ++++
Sbjct: 228 ETKKGKLPIVDSNGHLVSLVARSDLLK 254
>pdb|2V8Q|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Amp
pdb|2V92|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Atp-Amp
pdb|2V9J|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Mg.Atp-Amp
pdb|2Y8L|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Two Adp
pdb|2Y8Q|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With One Adp
pdb|2Y94|E Chain E, Structure Of An Active Form Of Mammalian Ampk
pdb|2YA3|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Coumarin Adp
pdb|4EAG|C Chain C, Co-Crystal Structure Of An Chimeric Ampk Core With Atp
pdb|4EAI|C Chain C, Co-Crystal Structure Of An Ampk Core With Amp
pdb|4EAJ|C Chain C, Co-Crystal Of Ampk Core With Amp Soaked With Atp
pdb|4EAK|C Chain C, Co-Crystal Structure Of An Ampk Core With Atp
pdb|4EAL|C Chain C, Co-Crystal Of Ampk Core With Atp Soaked With Amp
Length = 330
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 20/129 (15%)
Query: 109 VPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT 168
V AL I V+ R++ PV+D+ ++V + S +D++ L + D S
Sbjct: 212 VYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVS----------- 260
Query: 169 FNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGI 228
V K L + G L + ET LE L+E + RL VVD + GI
Sbjct: 261 ---VTKALQHRSHYFEGVL----KCYLHET--LEAIINRLVEAEVHRLVVVDEHDVVKGI 311
Query: 229 ITRGNVVRA 237
++ ++++A
Sbjct: 312 VSLSDILQA 320
>pdb|4FRY|A Chain A, The Structure Of A Putative Signal-Transduction Protein
With Cbs Domains From Burkholderia Ambifaria Mc40-6
pdb|4FRY|B Chain B, The Structure Of A Putative Signal-Transduction Protein
With Cbs Domains From Burkholderia Ambifaria Mc40-6
Length = 157
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 28/132 (21%)
Query: 108 FVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK 167
FV A++++ EK I V+D D + G+V++ D A + E S
Sbjct: 31 FVYDAIKLMAEKGIGALLVVDGD-DIAGIVTERDY-----------ARKVVLQERSSKAT 78
Query: 168 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVG 227
E+ MT V + + ++ L+ E + R LPV+D GKL+G
Sbjct: 79 RVEEI---------------MTAKVRYVEPSQSTDECMALMTEHRMRHLPVLDG-GKLIG 122
Query: 228 IITRGNVVRAAL 239
+I+ G++V++ +
Sbjct: 123 LISIGDLVKSVI 134
>pdb|2UV6|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 20/129 (15%)
Query: 109 VPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT 168
V AL I V+ R++ PV+D+ ++V + S +D++ L + D S+ +
Sbjct: 40 VYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHY 99
Query: 169 FNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGI 228
F V K + ET LE L+E + +L VVD + + GI
Sbjct: 100 FEGVLKCY------------------LHET--LETIINRLVEAEVHQLVVVDENDVVKGI 139
Query: 229 ITRGNVVRA 237
++ ++++A
Sbjct: 140 VSLSDILQA 148
>pdb|1XKF|A Chain A, Crystal Structure Of Hypoxic Response Protein I (Hrpi)
With Two Coordinated Zinc Ions
pdb|1XKF|B Chain B, Crystal Structure Of Hypoxic Response Protein I (Hrpi)
With Two Coordinated Zinc Ions
Length = 133
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 63/148 (42%), Gaps = 27/148 (18%)
Query: 89 MTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 148
MTT ++ T + + A + + E I P+ DD +L G+++D D++
Sbjct: 7 MTTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLA 66
Query: 149 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 208
+G + P N G+L + V ++++ ++
Sbjct: 67 AG-------LDP-------------------NTATAGELARDSIYYVDANASIQEMLNVM 100
Query: 209 LETKYRRLPVVDADGKLVGIITRGNVVR 236
E + RR+PV+ ++ +LVGI+T ++ R
Sbjct: 101 EEHQVRRVPVI-SEHRLVGIVTEADIAR 127
>pdb|2UV7|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 20/129 (15%)
Query: 109 VPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT 168
V AL I V+ R++ PV+D+ ++V + S +D++ L + D S+ +
Sbjct: 40 VYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHY 99
Query: 169 FNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGI 228
F V K + ET LE L+E + L VVD + + GI
Sbjct: 100 FEGVLKCY------------------LHET--LETIINRLVEAEVHGLVVVDENDVVKGI 139
Query: 229 ITRGNVVRA 237
++ ++++A
Sbjct: 140 VSLSDILQA 148
>pdb|3USB|A Chain A, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
pdb|3USB|B Chain B, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
Length = 511
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 33/113 (29%)
Query: 120 RITGFPVID--DDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS 177
RI+G PV++ D+ KLVG++++ D F +Q
Sbjct: 143 RISGVPVVNNLDERKLVGIITNRD---------------XRF------------IQDYSI 175
Query: 178 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIIT 230
K + + + APV T L +A ++L + K +LP+VD +G L G+IT
Sbjct: 176 KISDVXTKEQLITAPV----GTTLSEAEKILQKYKIEKLPLVDNNGVLQGLIT 224
>pdb|4AVF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
Length = 490
Score = 33.9 bits (76), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 36/149 (24%)
Query: 92 KEELHVVK-PTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG 150
K E +V+ P T + L++ E +GFPV++ +LVG+V+ DL
Sbjct: 89 KHETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVEQ-GELVGIVTGRDLR------- 140
Query: 151 SGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAARLL 208
+ G V +MTP V RE T LE+ L
Sbjct: 141 -------------------------VKPNAGDTVAAIMTPKDKLVTAREGTPLEEMKAKL 175
Query: 209 LETKYRRLPVVDADGKLVGIITRGNVVRA 237
E + ++ VVD + L G++T ++ +A
Sbjct: 176 YENRIEKMLVVDENFYLRGLVTFRDIEKA 204
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDL 142
TV MT K++L + T ++E L E RI V+D+++ L GLV+ D+
Sbjct: 148 TVAAIMTPKDKLVTAREGTPLEEMKAK-----LYENRIEKMLVVDENFYLRGLVTFRDI 201
>pdb|3ZFH|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine
5'-monophosphate Dehydrogenase
Length = 510
Score = 33.9 bits (76), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 36/149 (24%)
Query: 92 KEELHVVK-PTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG 150
K E +V+ P T + L++ E +GFPV++ +LVG+V+ DL
Sbjct: 109 KHETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVEQ-GELVGIVTGRDLR------- 160
Query: 151 SGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAARLL 208
+ G V +MTP V RE T LE+ L
Sbjct: 161 -------------------------VKPNAGDTVAAIMTPKDKLVTAREGTPLEEMKAKL 195
Query: 209 LETKYRRLPVVDADGKLVGIITRGNVVRA 237
E + ++ VVD + L G++T ++ +A
Sbjct: 196 YENRIEKMLVVDENFYLRGLVTFRDIEKA 224
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDL 142
TV MT K++L + T ++E L E RI V+D+++ L GLV+ D+
Sbjct: 168 TVAAIMTPKDKLVTAREGTPLEEMKAK-----LYENRIEKMLVVDENFYLRGLVTFRDI 221
>pdb|2QR1|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QR1|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QRC|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRC|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRD|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRD|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRE|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
pdb|2QRE|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
Length = 334
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 14/135 (10%)
Query: 108 FVPTALEILVEKRITGFPVIDDDW-KLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW 166
FV T+L +L I P+ D + K GL++ D + + +S FPE +
Sbjct: 42 FVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKY----YYQSSSFPEAIAEI 97
Query: 167 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGK-- 224
F +LL + + P + V +L DA + +++ RR+P++D DG+
Sbjct: 98 DKF----RLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETG 153
Query: 225 ---LVGIITRGNVVR 236
+V ++T+ +++
Sbjct: 154 SEMIVSVLTQYRILK 168
>pdb|2OOX|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOX|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOY|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
pdb|2OOY|E Chain E, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
Length = 333
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 14/135 (10%)
Query: 108 FVPTALEILVEKRITGFPVIDDDW-KLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW 166
FV T+L +L I P+ D + K GL++ D + + +S FPE +
Sbjct: 41 FVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKY----YYQSSSFPEAIAEI 96
Query: 167 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGK-- 224
F +LL + + P + V +L DA + +++ RR+P++D DG+
Sbjct: 97 DKF----RLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETG 152
Query: 225 ---LVGIITRGNVVR 236
+V ++T+ +++
Sbjct: 153 SEMIVSVLTQYRILK 167
>pdb|3FV6|A Chain A, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor
pdb|3FV6|B Chain B, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor
pdb|3FWR|A Chain A, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Adp
pdb|3FWR|B Chain B, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Adp
pdb|3FWS|A Chain A, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Appnp, Phosphate
And Magnesium Ions
pdb|3FWS|B Chain B, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Appnp, Phosphate
And Magnesium Ions
Length = 159
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 173 QKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRG 232
Q L K V D + PVV+ E ++ DA + L VVD D LVG+++R
Sbjct: 8 QLLADKLKKLQVKDFQS-IPVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRK 66
Query: 233 NVVRAAL 239
+++RA++
Sbjct: 67 DLLRASI 73
>pdb|3DDJ|A Chain A, Crystal Structure Of A Cbs Domain-Containing Protein In
Complex With Amp (Sso3205) From Sulfolobus Solfataricus
At 1.80 A Resolution
Length = 296
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 186 DLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITR 231
D TP PV V T++ A + + + LPVVD + K VGI+T
Sbjct: 97 DYXTPNPVTVYNTSDEFTAINIXVTRNFGSLPVVDINDKPVGIVTE 142
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 32/147 (21%)
Query: 100 PTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF 159
P T + + TA+ I V + PV+D + K VG+V++ + L L + + +F
Sbjct: 103 PVTVYNTSDEFTAINIXVTRNFGSLPVVDINDKPVGIVTEREFLLL------YKDLDEIF 156
Query: 160 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVV 219
P K F T + +E L+ A +L L +RRLPV+
Sbjct: 157 P-----VKVFXS-----------------TKVQTIYKEV-RLDQAVKLXLRRGFRRLPVI 193
Query: 220 DADGKLVGIITRGNVVRAALQIKHATE 246
D D K+VGI+T VV A Q+ A +
Sbjct: 194 DDDNKVVGIVT---VVNAIKQLAKAVD 217
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 21/117 (17%)
Query: 125 PVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMV 184
PVIDDD K+VG+V+ +++I +A + + P D + GK+V
Sbjct: 191 PVIDDDNKVVGIVT-----VVNAIKQLAKAVDKLDP--DYFY--------------GKVV 229
Query: 185 GDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 241
D+ V + E ++ AA + + L +++ D + GIIT +++ A I
Sbjct: 230 KDVXVTNLVTIDELASVNRAAAEXIVKRIGSLLILNKDNTIRGIITERDLLIALHHI 286
>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|F Chain F, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 315
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 73/156 (46%), Gaps = 26/156 (16%)
Query: 85 VGDF-MTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
+GD + T++ + + TT V + +++L + R++ P+ID++ L+ + YD+L
Sbjct: 182 IGDLNIITQDNMKSCQMTTPVIDV-----IQMLTQGRVSSVPIIDENGYLINVYEAYDVL 236
Query: 144 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 203
L I G D S+ ++ + ++ + + + T + +M D
Sbjct: 237 GL--IKGGIYNDLSL-SVGEALMRRSDDFEGVYTCTKNDKLSTIM--------------D 279
Query: 204 AARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 239
R + + R VVD G+LVG++T ++++ L
Sbjct: 280 NIR---KARVHRFFVVDDVGRLVGVLTLSDILKYIL 312
>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces
Cerevisiae Ampk In Complex With Adp
pdb|3TDH|C Chain C, Structure Of The Regulatory Fragment Of Sccharomyces
Cerevisiae Ampk In Complex With Amp
pdb|3TE5|C Chain C, Structure Of The Regulatory Fragment Of Sacchromyces
Cerevisiae Ampk In Complex With Nadh
Length = 323
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 73/156 (46%), Gaps = 26/156 (16%)
Query: 85 VGDF-MTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
+GD + T++ + + TT V + +++L + R++ P+ID++ L+ + YD+L
Sbjct: 189 IGDLNIITQDNMKSCQMTTPVIDV-----IQMLTQGRVSSVPIIDENGYLINVYEAYDVL 243
Query: 144 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 203
L I G D S+ ++ + ++ + + + T + +M D
Sbjct: 244 GL--IKGGIYNDLSL-SVGEALMRRSDDFEGVYTCTKNDKLSTIM--------------D 286
Query: 204 AARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 239
R + + R VVD G+LVG++T ++++ L
Sbjct: 287 NIR---KARVHRFFVVDDVGRLVGVLTLSDILKYIL 319
>pdb|3L2B|A Chain A, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With Activator, Diadenosine
Tetraphosphate
pdb|3L2B|B Chain B, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With Activator, Diadenosine
Tetraphosphate
Length = 245
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 187 LMTPAPVVVRETTNL-EDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 235
+MT +V T +L ED + ET+Y PV+D + K+VG I R +++
Sbjct: 190 VMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLI 239
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 87 DFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144
D++ TK+ L V V++ V + E R + +PVID++ K+VG ++ + L++
Sbjct: 188 DYVMTKDNLVAVSTDDLVEDVKVTMS-----ETRYSNYPVIDENNKVVGSIARFHLIS 240
>pdb|3L31|A Chain A, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With The Inhibitor, Amp
pdb|3L31|B Chain B, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With The Inhibitor, Amp
Length = 252
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 187 LMTPAPVVVRETTNL-EDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 235
+MT +V T +L ED + ET+Y PV+D + K+VG I R +++
Sbjct: 187 VMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLI 236
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 87 DFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144
D++ TK+ L V V++ V + E R + +PVID++ K+VG ++ + L++
Sbjct: 185 DYVMTKDNLVAVSTDDLVEDVKVTMS-----ETRYSNYPVIDENNKVVGSIARFHLIS 237
>pdb|2NYC|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 73/156 (46%), Gaps = 26/156 (16%)
Query: 85 VGDF-MTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
+GD + T++ + + TT V + +++L + R++ P+ID++ L+ + YD+L
Sbjct: 10 IGDLNIITQDNMKSCQMTTPVIDV-----IQMLTQGRVSSVPIIDENGYLINVYEAYDVL 64
Query: 144 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 203
L I G D S+ ++ + ++ + + + T + +M D
Sbjct: 65 GL--IKGGIYNDLSL-SVGEALMRRSDDFEGVYTCTKNDKLSTIM--------------D 107
Query: 204 AARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 239
R + + R VVD G+LVG++T ++++ L
Sbjct: 108 NIR---KARVHRFFVVDDVGRLVGVLTLSDILKYIL 140
>pdb|2EF7|A Chain A, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
pdb|2EF7|B Chain B, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
Length = 133
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 186 DLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
+ T + + +RE + + A L + R LPVVD G L GII+ ++ RA
Sbjct: 71 EFXTASLITIREDSPITGALALXRQFNIRHLPVVDDKGNLKGIISIRDITRA 122
>pdb|3K6E|A Chain A, Crystal Structure Of Cbs Domain Protein From Streptococcus
Pneumoniae Tigr4
pdb|3K6E|B Chain B, Crystal Structure Of Cbs Domain Protein From Streptococcus
Pneumoniae Tigr4
Length = 156
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 216 LPVVDADGKLVGIITRGNVVRAALQIKH 243
LPVVDA+G GIITR ++++A + H
Sbjct: 118 LPVVDAEGIFQGIITRKSILKAVNALLH 145
>pdb|2YZI|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
pdb|2YZI|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
Length = 138
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 195 VRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 239
V+ +T++++A+RL E L V++ DG +VG T+ +++R +
Sbjct: 20 VKPSTSVQEASRLXXEFDVGSLVVINDDGNVVGFFTKSDIIRRVI 64
>pdb|2J9L|A Chain A, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|B Chain B, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|C Chain C, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|D Chain D, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|E Chain E, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|F Chain F, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2JA3|A Chain A, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|B Chain B, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|C Chain C, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|D Chain D, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|E Chain E, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|F Chain F, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
Length = 185
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 16/140 (11%)
Query: 115 ILVEKRITGFPVI--DDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNE- 171
I+ E +GFPV+ + +LVG V DL+ SI + + + + V ++ F E
Sbjct: 42 IISETTYSGFPVVVSRESQRLVGFVLRRDLII--SIENARKKQDGV---VSTSIIYFTEH 96
Query: 172 -VQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIIT 230
+ +++ +P V + T +E + + R+ +V +G+L+GIIT
Sbjct: 97 SPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQC-LVTHNGRLLGIIT 155
Query: 231 RGNVVRAALQIKHATEMGAQ 250
+ +V +KH +M Q
Sbjct: 156 KKDV------LKHIAQMANQ 169
>pdb|1ME7|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Rvp And Moa Bound
pdb|1MEI|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Xmp And Mycophenolic Acid
Bound
pdb|1MEW|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Xmp And Nad Bound
pdb|1AK5|A Chain A, Inosine Monophosphate Dehydrogenase (impdh) From
Tritrichomonas Foetus
Length = 503
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 85 VGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLV--SDYD 141
V D MT +L T + EA +I+ EK++ P+IDDD L +V DYD
Sbjct: 163 VSDMMTPFSKLVTAHQDTKLSEAN-----KIIWEKKLNALPIIDDDQHLRYIVFRKDYD 216
>pdb|1ME8|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Rvp Bound
pdb|1ME9|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Imp Bound
pdb|1MEH|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Imp And Moa Bound
Length = 503
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 85 VGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLV--SDYD 141
V D MT +L T + EA +I+ EK++ P+IDDD L +V DYD
Sbjct: 163 VSDMMTPFSKLVTAHQDTKLSEAN-----KIIWEKKLNALPIIDDDQHLRYIVFRKDYD 216
>pdb|2QH1|A Chain A, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In Its
Fe+2-Bound State
pdb|2QH1|B Chain B, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In Its
Fe+2-Bound State
Length = 198
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 26/119 (21%)
Query: 112 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNE 171
A++I+ E + G V DD+ VGL+S+ ++ K F
Sbjct: 45 AVKIMNENHLYGLVVKDDNGNDVGLLSERSII-----------------------KRFIP 81
Query: 172 VQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIIT 230
K + ++V + P P V + +++D A L E R VVD G++VGI+T
Sbjct: 82 RNKKPDEVPIRLV--MRKPIPKV-KSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVT 137
>pdb|1PVM|A Chain A, Crystal Structure Of A Conserved Cbs Domain Protein Ta0289
Of Unknown Function From Thermoplasma Acidophilum
pdb|1PVM|B Chain B, Crystal Structure Of A Conserved Cbs Domain Protein Ta0289
Of Unknown Function From Thermoplasma Acidophilum
Length = 184
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 26/119 (21%)
Query: 112 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNE 171
A++I+ E + G V DD+ VGL+S+ ++ K F
Sbjct: 31 AVKIMNENHLYGLVVKDDNGNDVGLLSERSII-----------------------KRFIP 67
Query: 172 VQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIIT 230
K + ++V + P P V + +++D A L E R VVD G++VGI+T
Sbjct: 68 RNKKPDEVPIRLV--MRKPIPKV-KSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVT 123
>pdb|1REQ|B Chain B, Methylmalonyl-Coa Mutase
pdb|1REQ|D Chain D, Methylmalonyl-Coa Mutase
pdb|2REQ|B Chain B, Methylmalonyl-Coa Mutase, Non-Productive Coa Complex, In
Open Conformation Representing Substrate-Free State
pdb|2REQ|D Chain D, Methylmalonyl-Coa Mutase, Non-Productive Coa Complex, In
Open Conformation Representing Substrate-Free State
pdb|3REQ|B Chain B, Methylmalonyl-Coa Mutase, Substrate-Free State (Poor
Quality Structure)
pdb|6REQ|B Chain B, Methylmalonyl-Coa Mutase, 3-Carboxypropyl-Coa Inhibitor
Complex
pdb|6REQ|D Chain D, Methylmalonyl-Coa Mutase, 3-Carboxypropyl-Coa Inhibitor
Complex
pdb|7REQ|B Chain B, Methylmalonyl-Coa Mutase, 2-Carboxypropyl-Coa Inhibitor
Complex
pdb|7REQ|D Chain D, Methylmalonyl-Coa Mutase, 2-Carboxypropyl-Coa Inhibitor
Complex
pdb|4REQ|B Chain B, Methylmalonyl-Coa Mutase Substrate Complex
pdb|4REQ|D Chain D, Methylmalonyl-Coa Mutase Substrate Complex
pdb|5REQ|B Chain B, Methylmalonyl-Coa Mutase, Y89f Mutant, Substrate Complex
pdb|5REQ|D Chain D, Methylmalonyl-Coa Mutase, Y89f Mutant, Substrate Complex
pdb|1E1C|B Chain B, Methylmalonyl-Coa Mutase H244a Mutant
pdb|1E1C|D Chain D, Methylmalonyl-Coa Mutase H244a Mutant
Length = 637
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 163 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARL 207
D+ WK F EV+KL G M +MT V + N E A RL
Sbjct: 413 DAAWKEFQEVEKL-----GGMSKAVMTEHVTKVLDACNAERAKRL 452
>pdb|3FHM|A Chain A, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|B Chain B, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|C Chain C, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|D Chain D, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
Length = 165
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 188 MTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
MT V + + + ++ ++R +PV + +G+L GII+ G+VV+A
Sbjct: 99 MTKNVVRCQHNSTTDQLMEIMTGGRFRHVPV-EENGRLAGIISIGDVVKA 147
>pdb|2EMQ|A Chain A, Hypothetical Conserved Protein (gk1048) From Geobacillus
Kaustophilus
pdb|2EMQ|B Chain B, Hypothetical Conserved Protein (gk1048) From Geobacillus
Kaustophilus
Length = 157
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
TV F+ +++ V+P +D A + +L + + PV+D +KL GL+S +
Sbjct: 12 TVKPFLIPADKVAHVQPGNYLDHALL-----VLTKTGYSAIPVLDTSYKLHGLIS--MTM 64
Query: 144 ALDSISGSGRAD 155
+D+I G R +
Sbjct: 65 MMDAILGLERIE 76
>pdb|1A3Z|A Chain A, Reduced Rusticyanin At 1.9 Angstroms
Length = 155
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 162 VDSTWK--TFNEVQKLLSKTNGKMVGDLMT 189
+DSTWK T +V+ +L K +GK+ GD +T
Sbjct: 3 LDSTWKEATLPQVKAMLEKDDGKVSGDTVT 32
>pdb|2NYE|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
pdb|2NYE|B Chain B, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 20/131 (15%)
Query: 109 VPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT 168
V ++ L + R++ P+ID++ L+ + YD+L L I G D S+
Sbjct: 30 VIDVIQXLTQGRVSSVPIIDENGYLINVYEAYDVLGL--IKGGIYNDLSL---------- 77
Query: 169 FNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGI 228
V + L + + G + + + D R + + R VVD G+LVG+
Sbjct: 78 --SVGEALXRRSDDFEGVYTCTKN---DKLSTIXDNIR---KARVHRFFVVDDVGRLVGV 129
Query: 229 ITRGNVVRAAL 239
+T ++++ L
Sbjct: 130 LTLSDILKYIL 140
>pdb|1YAV|A Chain A, Crystal Structure Of Cbs Domain-Containing Protein Ykul
From Bacillus Subtilis
pdb|1YAV|B Chain B, Crystal Structure Of Cbs Domain-Containing Protein Ykul
From Bacillus Subtilis
Length = 159
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 184 VGDLMTPAPVV--VRETTNLEDAARLLLETKYRRLPVVDADGKLVGII 229
VG M A V V+ NLE A +L +T Y +PV+D +L G+I
Sbjct: 16 VGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLI 63
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
TVG FM +++ V+ ++ A + +L + T PV+D ++L GL+ +
Sbjct: 15 TVGQFMIEADKVAHVQVGNNLEHALL-----VLTKTGYTAIPVLDPSYRLHGLIGTN--M 67
Query: 144 ALDSISGSGRADNSMFPEVDS 164
++SI G R + F ++D
Sbjct: 68 IMNSIFGLERIE---FEKLDQ 85
>pdb|3LQN|A Chain A, Crystal Structure Of Cbs Domain-Containing Protein Of
Unknown Function From Bacillus Anthracis Str. Ames
Ancestor
Length = 150
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 33/154 (21%)
Query: 85 VGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144
V D M + E++ V+ ++ A + +LV+ + PV+D +KL GL+S +
Sbjct: 17 VKDLMISSEKVAHVQIGNGLEHALL-----VLVKSGYSAIPVLDPMYKLHGLISTA--MI 69
Query: 145 LDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED- 203
LD I G R + E+ K M D+ PV+ LED
Sbjct: 70 LDGILGLERIEFERLEEM---------------KVEQVMKQDI----PVL-----KLEDS 105
Query: 204 -AARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236
A L + + + V+ DG GI+TR +++
Sbjct: 106 FAKALEMTIDHPFICAVNEDGYFEGILTRRAILK 139
>pdb|2FOM|B Chain B, Dengue Virus Ns2bNS3 PROTEASE
Length = 185
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 161 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD 220
+++ WK EVQ +L+ GK + T P + + T A L P+VD
Sbjct: 84 KLEGEWKEGEEVQ-VLALEPGKNPRAVQT-KPGLFKTNTGTIGAVSLDFSPGTSGSPIVD 141
Query: 221 ADGKLVGIITRGNVVRAALQI 241
GK+VG+ G V R+ +
Sbjct: 142 KKGKVVGLYGNGVVTRSGAYV 162
>pdb|4FXS|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae Complexed With Imp And Mycophenolic Acid
Length = 496
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 97 VVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDL 142
V P T E + E+ GFPV+ ++ +LVG+++ D+
Sbjct: 96 VTHPVTVRPEQTIADVXELTHYHGFAGFPVVTENNELVGIITGRDV 141
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 192 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIIT 230
PV VR + D L + PVV + +LVGIIT
Sbjct: 99 PVTVRPEQTIADVXELTHYHGFAGFPVVTENNELVGIIT 137
>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila
pdb|3PC3|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Aminoacrylate
pdb|3PC4|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Serine
Length = 527
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 184 VGDLMTPAP-VVVRETTNLEDAARLLLETKYRRLPVVDA-DGKLVGIITRGNVV 235
+ +L PAP V+++ + +A L+ + + +LPVVD DG ++G++ + ++
Sbjct: 386 IAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLI 439
>pdb|1B3O|A Chain A, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
pdb|1B3O|B Chain B, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
pdb|1NF7|A Chain A, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With Ribavirin Monophosphate And C2-
Mycophenolic Adenine Dinucleotide
pdb|1NF7|B Chain B, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With Ribavirin Monophosphate And C2-
Mycophenolic Adenine Dinucleotide
pdb|1NFB|A Chain A, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With 6cl-Imp And Nad
pdb|1NFB|B Chain B, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With 6cl-Imp And Nad
Length = 514
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 87 DFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDL 142
+ MT +E+L V T+ EA EIL + P++++D +LV +++ DL
Sbjct: 177 EIMTKREDLVVAPAGITLKEAN-----EILQRSKKGKLPIVNEDDELVAIIARTDL 227
>pdb|2CAK|A Chain A, 1.27angstrom Structure Of Rusticyanin From Thiobacillus
Ferrooxidans
Length = 154
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 162 VDSTWK--TFNEVQKLLSKTNGKMVGDLMT 189
+D+TWK T +V+ +L K GK+ GD +T
Sbjct: 2 LDTTWKEATLPQVKAMLQKDTGKVSGDTVT 31
>pdb|2CAL|A Chain A, Crystal Structure Of His143met Rusticyanin
Length = 154
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 162 VDSTWK--TFNEVQKLLSKTNGKMVGDLMT 189
+D+TWK T +V+ +L K GK+ GD +T
Sbjct: 2 LDTTWKEATLPQVKAMLEKDTGKVSGDTVT 31
>pdb|1GY2|A Chain A, Crystal Structure Of Met148leu Rusticyanin
pdb|1GY2|B Chain B, Crystal Structure Of Met148leu Rusticyanin
Length = 155
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 162 VDSTWK--TFNEVQKLLSKTNGKMVGDLMT 189
+D+TWK T +V+ +L K GK+ GD +T
Sbjct: 3 LDTTWKEATLPQVKAMLEKDTGKVSGDTVT 32
>pdb|1GY1|A Chain A, Crystal Structures Of Ser86asp And Met148leu Rusticyanin
pdb|1GY1|B Chain B, Crystal Structures Of Ser86asp And Met148leu Rusticyanin
Length = 155
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 162 VDSTWK--TFNEVQKLLSKTNGKMVGDLMT 189
+D+TWK T +V+ +L K GK+ GD +T
Sbjct: 3 LDTTWKEATLPQVKAMLQKDTGKVSGDTVT 32
>pdb|1CUR|A Chain A, Reduced Rusticyanin, Nmr
Length = 155
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 162 VDSTWK--TFNEVQKLLSKTNGKMVGDLMT 189
+D+TWK T +V+ +L K GK+ GD +T
Sbjct: 3 LDTTWKEATLPQVKAMLEKDTGKVSGDTVT 32
>pdb|1E30|A Chain A, Crystal Structure Of The Met148gln Mutant Of Rusticyanin
At 1.5 Angstrom Resolution
pdb|1E30|B Chain B, Crystal Structure Of The Met148gln Mutant Of Rusticyanin
At 1.5 Angstrom Resolution
Length = 155
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 162 VDSTWK--TFNEVQKLLSKTNGKMVGDLMT 189
+D+TWK T +V+ +L K GK+ GD +T
Sbjct: 3 LDTTWKEATLPQVKAMLEKDTGKVSGDTVT 32
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,888,948
Number of Sequences: 62578
Number of extensions: 274396
Number of successful extensions: 1159
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 999
Number of HSP's gapped (non-prelim): 155
length of query: 250
length of database: 14,973,337
effective HSP length: 96
effective length of query: 154
effective length of database: 8,965,849
effective search space: 1380740746
effective search space used: 1380740746
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)