Query 025613
Match_columns 250
No_of_seqs 202 out of 1692
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 07:37:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025613.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025613hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2524 Predicted transcriptio 99.8 1.8E-19 4E-24 150.4 11.4 125 79-240 168-292 (294)
2 COG3448 CBS-domain-containing 99.8 2.7E-18 5.8E-23 146.0 10.9 199 15-244 176-377 (382)
3 COG4109 Predicted transcriptio 99.7 1.8E-17 3.9E-22 144.0 10.7 127 81-245 186-312 (432)
4 cd04619 CBS_pair_6 The CBS dom 99.7 1.5E-16 3.3E-21 119.8 12.6 111 95-236 3-113 (114)
5 cd04603 CBS_pair_KefB_assoc Th 99.7 1.7E-16 3.6E-21 119.0 12.4 109 94-236 2-110 (111)
6 PRK15094 magnesium/cobalt effl 99.7 1E-16 2.3E-21 140.6 13.0 131 77-242 61-192 (292)
7 PRK11543 gutQ D-arabinose 5-ph 99.7 1E-16 2.2E-21 142.5 11.8 121 82-237 196-318 (321)
8 TIGR03520 GldE gliding motilit 99.7 1.9E-16 4.2E-21 145.0 13.6 128 77-241 185-313 (408)
9 PRK10892 D-arabinose 5-phospha 99.7 1.6E-16 3.4E-21 141.6 12.6 124 81-237 200-323 (326)
10 COG3620 Predicted transcriptio 99.7 8.1E-17 1.8E-21 125.5 9.0 123 81-240 63-185 (187)
11 PRK07807 inosine 5-monophospha 99.7 4.8E-16 1E-20 144.3 15.6 123 79-241 85-207 (479)
12 cd04630 CBS_pair_17 The CBS do 99.7 4.1E-16 8.9E-21 117.2 12.3 111 94-236 2-113 (114)
13 cd04618 CBS_pair_5 The CBS dom 99.7 2.9E-16 6.3E-21 115.8 10.9 94 94-236 2-97 (98)
14 cd04593 CBS_pair_EriC_assoc_ba 99.7 5.6E-16 1.2E-20 116.5 12.1 112 94-237 2-115 (115)
15 cd04641 CBS_pair_28 The CBS do 99.7 6.9E-16 1.5E-20 117.1 12.7 119 94-237 2-120 (120)
16 cd04617 CBS_pair_4 The CBS dom 99.7 5.8E-16 1.3E-20 117.2 11.8 111 94-236 2-117 (118)
17 cd04600 CBS_pair_HPP_assoc Thi 99.7 5.8E-16 1.3E-20 117.7 11.7 121 94-236 3-123 (124)
18 TIGR01302 IMP_dehydrog inosine 99.7 1E-15 2.2E-20 141.9 15.3 188 2-239 6-201 (450)
19 cd04596 CBS_pair_DRTGG_assoc T 99.7 6E-16 1.3E-20 115.2 11.3 105 94-236 3-107 (108)
20 PRK01862 putative voltage-gate 99.7 4E-16 8.6E-21 148.9 12.2 131 77-241 441-573 (574)
21 cd04623 CBS_pair_10 The CBS do 99.7 1.3E-15 2.8E-20 113.5 12.5 111 94-236 2-112 (113)
22 cd04583 CBS_pair_ABC_OpuCA_ass 99.7 1.5E-15 3.3E-20 112.5 12.4 106 94-236 3-108 (109)
23 cd04639 CBS_pair_26 The CBS do 99.7 1E-15 2.2E-20 114.1 11.3 109 94-236 2-110 (111)
24 cd04605 CBS_pair_MET2_assoc Th 99.7 2.2E-15 4.8E-20 112.1 12.8 107 94-236 3-109 (110)
25 cd04608 CBS_pair_PALP_assoc Th 99.7 4.6E-16 1E-20 119.4 9.3 113 94-238 3-124 (124)
26 cd04582 CBS_pair_ABC_OpuCA_ass 99.7 1.8E-15 3.9E-20 111.8 12.0 104 94-236 2-105 (106)
27 cd04615 CBS_pair_2 The CBS dom 99.7 2E-15 4.4E-20 112.9 12.1 110 95-236 3-112 (113)
28 cd04643 CBS_pair_30 The CBS do 99.6 1.5E-15 3.3E-20 113.9 11.0 114 94-236 2-115 (116)
29 cd04613 CBS_pair_SpoIVFB_EriC_ 99.6 1.8E-15 4E-20 112.9 11.2 111 94-236 2-113 (114)
30 cd04624 CBS_pair_11 The CBS do 99.6 3.9E-15 8.4E-20 111.1 12.8 110 94-236 2-111 (112)
31 cd04607 CBS_pair_NTP_transfera 99.6 3.6E-15 7.8E-20 111.7 12.6 109 95-236 4-112 (113)
32 cd04803 CBS_pair_15 The CBS do 99.6 2.7E-15 5.9E-20 113.7 11.8 120 94-236 2-121 (122)
33 cd04801 CBS_pair_M50_like This 99.6 1.9E-15 4.1E-20 113.4 10.7 109 94-236 2-113 (114)
34 PRK05567 inosine 5'-monophosph 99.6 3.9E-15 8.4E-20 139.3 14.8 188 2-239 13-205 (486)
35 cd04626 CBS_pair_13 The CBS do 99.6 3.6E-15 7.7E-20 111.3 11.7 109 94-236 2-110 (111)
36 PTZ00314 inosine-5'-monophosph 99.6 4.5E-15 9.8E-20 138.7 15.0 188 2-239 22-218 (495)
37 cd04636 CBS_pair_23 The CBS do 99.6 2.8E-15 6.1E-20 115.7 11.4 131 94-237 2-132 (132)
38 cd04614 CBS_pair_1 The CBS dom 99.6 4E-15 8.6E-20 109.1 11.4 94 94-236 2-95 (96)
39 cd04604 CBS_pair_KpsF_GutQ_ass 99.6 4.5E-15 9.7E-20 110.9 11.9 111 94-236 3-113 (114)
40 cd04642 CBS_pair_29 The CBS do 99.6 5.1E-15 1.1E-19 113.3 12.4 124 94-236 2-125 (126)
41 cd04627 CBS_pair_14 The CBS do 99.6 5.4E-15 1.2E-19 112.6 12.2 119 94-235 2-121 (123)
42 cd04602 CBS_pair_IMPDH_2 This 99.6 4.8E-15 1E-19 111.4 11.8 106 94-236 3-113 (114)
43 cd04631 CBS_pair_18 The CBS do 99.6 3.5E-15 7.6E-20 113.5 11.1 123 94-237 2-125 (125)
44 cd04601 CBS_pair_IMPDH This cd 99.6 4.2E-15 9.1E-20 110.3 11.0 106 94-236 3-109 (110)
45 cd04629 CBS_pair_16 The CBS do 99.6 3.8E-15 8.2E-20 111.4 10.6 112 94-236 2-113 (114)
46 cd04621 CBS_pair_8 The CBS dom 99.6 5.7E-15 1.2E-19 115.0 12.0 132 94-236 2-134 (135)
47 cd04588 CBS_pair_CAP-ED_DUF294 99.6 9E-15 1.9E-19 108.8 12.5 108 94-236 2-109 (110)
48 cd04635 CBS_pair_22 The CBS do 99.6 4.2E-15 9E-20 112.7 10.9 120 94-236 2-121 (122)
49 cd04587 CBS_pair_CAP-ED_DUF294 99.6 6.2E-15 1.4E-19 110.1 11.5 111 94-236 2-112 (113)
50 cd04620 CBS_pair_7 The CBS dom 99.6 8.6E-15 1.9E-19 109.9 12.2 110 94-236 2-114 (115)
51 cd04800 CBS_pair_CAP-ED_DUF294 99.6 8.7E-15 1.9E-19 109.0 12.2 109 94-236 2-110 (111)
52 TIGR00400 mgtE Mg2+ transporte 99.6 5.5E-15 1.2E-19 137.1 13.3 125 79-243 127-256 (449)
53 cd04595 CBS_pair_DHH_polyA_Pol 99.6 9.8E-15 2.1E-19 108.7 12.2 107 94-236 3-109 (110)
54 cd04586 CBS_pair_BON_assoc Thi 99.6 4.1E-15 8.9E-20 115.2 10.5 128 94-236 3-134 (135)
55 cd04589 CBS_pair_CAP-ED_DUF294 99.6 9.4E-15 2E-19 109.0 12.0 110 94-237 2-111 (111)
56 TIGR01303 IMP_DH_rel_1 IMP deh 99.6 1E-14 2.2E-19 135.4 14.7 122 79-241 84-205 (475)
57 cd04622 CBS_pair_9 The CBS dom 99.6 9.6E-15 2.1E-19 109.0 12.0 111 94-236 2-112 (113)
58 cd04606 CBS_pair_Mg_transporte 99.6 5.2E-15 1.1E-19 110.2 10.5 102 98-237 2-108 (109)
59 cd04611 CBS_pair_PAS_GGDEF_DUF 99.6 1.3E-14 2.9E-19 107.8 12.7 109 94-236 2-110 (111)
60 PRK07107 inosine 5-monophospha 99.6 5.2E-15 1.1E-19 138.2 12.7 119 84-238 95-219 (502)
61 cd04640 CBS_pair_27 The CBS do 99.6 4.8E-15 1E-19 113.5 10.3 114 94-236 2-125 (126)
62 PRK11573 hypothetical protein; 99.6 6.7E-15 1.4E-19 134.9 13.0 189 11-242 119-314 (413)
63 cd04632 CBS_pair_19 The CBS do 99.6 8.3E-15 1.8E-19 112.3 11.5 124 94-236 2-127 (128)
64 PLN02274 inosine-5'-monophosph 99.6 2.2E-14 4.7E-19 134.2 16.1 113 89-240 106-223 (505)
65 cd04590 CBS_pair_CorC_HlyC_ass 99.6 1.3E-14 2.9E-19 108.0 11.6 108 94-236 2-110 (111)
66 cd04585 CBS_pair_ACT_assoc2 Th 99.6 1.5E-14 3.3E-19 109.1 12.0 120 94-236 2-121 (122)
67 cd04610 CBS_pair_ParBc_assoc T 99.6 1.7E-14 3.8E-19 106.6 12.0 104 94-236 3-106 (107)
68 cd04599 CBS_pair_GGDEF_assoc2 99.6 1.6E-14 3.5E-19 106.4 11.7 103 94-236 2-104 (105)
69 cd04612 CBS_pair_SpoIVFB_EriC_ 99.6 1.9E-14 4.2E-19 106.9 12.1 109 94-236 2-110 (111)
70 cd04625 CBS_pair_12 The CBS do 99.6 2.1E-14 4.6E-19 107.1 11.9 110 94-236 2-111 (112)
71 cd04594 CBS_pair_EriC_assoc_ar 99.6 1.7E-14 3.7E-19 106.7 11.1 100 96-236 4-103 (104)
72 cd04609 CBS_pair_PALP_assoc2 T 99.6 2E-14 4.2E-19 106.6 11.0 109 94-237 2-110 (110)
73 cd04637 CBS_pair_24 The CBS do 99.6 2.1E-14 4.6E-19 108.8 10.8 121 94-237 2-122 (122)
74 cd04633 CBS_pair_20 The CBS do 99.6 3.4E-14 7.5E-19 107.4 10.6 119 94-236 2-120 (121)
75 cd04591 CBS_pair_EriC_assoc_eu 99.6 4.5E-14 9.8E-19 105.1 10.5 100 94-237 3-105 (105)
76 COG2905 Predicted signal-trans 99.6 1.5E-14 3.4E-19 132.6 9.5 127 79-240 145-271 (610)
77 TIGR00393 kpsF KpsF/GutQ famil 99.5 3.1E-14 6.6E-19 123.3 10.8 114 82-230 154-268 (268)
78 cd04802 CBS_pair_3 The CBS dom 99.5 1.2E-13 2.6E-18 103.0 12.5 110 94-236 2-111 (112)
79 PRK14869 putative manganese-de 99.5 4.5E-14 9.7E-19 134.1 12.6 147 83-239 68-304 (546)
80 COG1253 TlyC Hemolysins and re 99.5 9.3E-14 2E-18 128.2 14.1 193 11-243 137-332 (429)
81 cd02205 CBS_pair The CBS domai 99.5 1.3E-13 2.7E-18 101.6 12.0 111 94-236 2-112 (113)
82 cd04584 CBS_pair_ACT_assoc Thi 99.5 7.2E-14 1.6E-18 105.5 10.9 119 94-236 2-120 (121)
83 TIGR01137 cysta_beta cystathio 99.5 6.1E-14 1.3E-18 130.3 12.3 124 78-238 330-453 (454)
84 cd04638 CBS_pair_25 The CBS do 99.5 2.3E-13 5.1E-18 100.6 11.9 104 94-236 2-105 (106)
85 cd04598 CBS_pair_GGDEF_assoc T 99.5 2E-13 4.4E-18 102.9 10.9 113 94-236 2-118 (119)
86 cd04634 CBS_pair_21 The CBS do 99.5 2.5E-13 5.4E-18 106.6 11.7 133 94-236 2-142 (143)
87 COG0517 FOG: CBS domain [Gener 99.5 8.4E-13 1.8E-17 98.9 12.3 108 94-235 8-117 (117)
88 COG2239 MgtE Mg/Co/Ni transpor 99.4 5.7E-13 1.2E-17 122.4 11.0 124 81-244 130-258 (451)
89 KOG0474 Cl- channel CLC-7 and 99.4 2E-13 4.4E-18 126.3 7.6 173 51-237 557-745 (762)
90 COG4536 CorB Putative Mg2+ and 99.4 5.2E-13 1.1E-17 117.4 9.1 134 77-243 194-328 (423)
91 COG4535 CorC Putative Mg2+ and 99.3 1.6E-12 3.4E-17 107.9 6.1 131 79-244 63-194 (293)
92 cd04592 CBS_pair_EriC_assoc_eu 99.3 1.2E-11 2.6E-16 96.3 9.9 108 94-222 2-118 (133)
93 PF00571 CBS: CBS domain CBS d 99.3 2.1E-11 4.5E-16 80.4 7.4 56 184-239 1-56 (57)
94 KOG2550 IMP dehydrogenase/GMP 99.1 1.5E-10 3.3E-15 102.9 8.6 186 2-237 34-226 (503)
95 PRK10070 glycine betaine trans 99.1 2.2E-09 4.7E-14 98.2 12.9 122 82-241 273-395 (400)
96 TIGR01186 proV glycine betaine 99.0 2.7E-09 6E-14 96.4 12.8 109 95-241 252-360 (363)
97 PF00571 CBS: CBS domain CBS d 99.0 6E-10 1.3E-14 73.4 5.2 55 85-146 1-55 (57)
98 KOG1764 5'-AMP-activated prote 99.0 5.3E-09 1.2E-13 94.9 10.8 125 94-242 238-362 (381)
99 KOG0475 Cl- channel CLC-3 and 98.9 5.6E-09 1.2E-13 97.3 8.8 161 55-238 524-694 (696)
100 TIGR00400 mgtE Mg2+ transporte 98.6 1.9E-08 4.2E-13 93.5 3.9 163 31-244 139-311 (449)
101 cd04603 CBS_pair_KefB_assoc Th 98.6 1.4E-07 3.1E-12 70.2 7.3 103 33-144 3-110 (111)
102 COG3448 CBS-domain-containing 98.6 9.9E-08 2.2E-12 82.0 5.6 65 173-237 236-300 (382)
103 COG2524 Predicted transcriptio 98.5 1.9E-07 4.1E-12 78.8 6.2 62 179-241 169-230 (294)
104 cd04597 CBS_pair_DRTGG_assoc2 98.5 3.2E-07 7E-12 69.0 6.0 55 182-236 58-112 (113)
105 PRK14869 putative manganese-de 98.5 5.2E-08 1.1E-12 92.8 1.4 143 81-236 244-390 (546)
106 cd04619 CBS_pair_6 The CBS dom 98.4 5.4E-07 1.2E-11 67.3 6.3 105 33-144 3-113 (114)
107 COG3620 Predicted transcriptio 98.4 6.1E-07 1.3E-11 70.6 6.2 79 163-242 44-124 (187)
108 PRK05567 inosine 5'-monophosph 98.4 2.9E-06 6.4E-11 79.7 11.1 162 31-236 95-264 (486)
109 cd04596 CBS_pair_DRTGG_assoc T 98.4 1.7E-06 3.8E-11 63.7 7.5 98 33-144 4-107 (108)
110 cd04597 CBS_pair_DRTGG_assoc2 98.3 1.1E-06 2.4E-11 66.0 5.9 83 55-144 26-112 (113)
111 cd04618 CBS_pair_5 The CBS dom 98.3 2.5E-06 5.3E-11 62.5 7.5 94 32-144 2-97 (98)
112 cd04617 CBS_pair_4 The CBS dom 98.3 1.8E-06 3.9E-11 64.8 6.4 107 33-144 3-117 (118)
113 cd04620 CBS_pair_7 The CBS dom 98.3 2.6E-06 5.6E-11 63.4 6.9 104 33-144 3-114 (115)
114 cd04600 CBS_pair_HPP_assoc Thi 98.3 3.5E-06 7.7E-11 63.4 7.3 104 33-144 4-123 (124)
115 smart00116 CBS Domain in cysta 98.2 4.9E-06 1.1E-10 51.2 6.3 47 192-238 2-48 (49)
116 cd04615 CBS_pair_2 The CBS dom 98.2 4.1E-06 9E-11 62.0 6.9 103 34-144 4-112 (113)
117 PRK07107 inosine 5-monophospha 98.2 1.6E-05 3.5E-10 74.8 12.4 103 33-145 107-218 (502)
118 cd04630 CBS_pair_17 The CBS do 98.2 4.5E-06 9.8E-11 62.1 7.1 104 33-144 3-113 (114)
119 cd04641 CBS_pair_28 The CBS do 98.2 5.5E-06 1.2E-10 62.3 7.5 49 191-239 2-50 (120)
120 cd04623 CBS_pair_10 The CBS do 98.2 6.7E-06 1.5E-10 60.6 7.7 104 33-144 3-112 (113)
121 cd04604 CBS_pair_KpsF_GutQ_ass 98.2 5.5E-06 1.2E-10 61.2 7.2 105 32-144 3-113 (114)
122 cd04606 CBS_pair_Mg_transporte 98.2 7.3E-06 1.6E-10 60.4 7.6 57 82-145 52-108 (109)
123 cd04592 CBS_pair_EriC_assoc_eu 98.2 7.3E-06 1.6E-10 63.6 7.8 50 191-240 2-51 (133)
124 cd04607 CBS_pair_NTP_transfera 98.2 7.9E-06 1.7E-10 60.6 7.7 100 35-143 6-111 (113)
125 PRK11543 gutQ D-arabinose 5-ph 98.2 6.3E-06 1.4E-10 73.3 8.3 104 33-145 209-318 (321)
126 cd04801 CBS_pair_M50_like This 98.2 3.3E-06 7.1E-11 62.8 5.5 104 33-144 3-113 (114)
127 PRK07807 inosine 5-monophospha 98.2 3.7E-05 7.9E-10 72.0 13.6 103 29-145 95-203 (479)
128 cd04593 CBS_pair_EriC_assoc_ba 98.2 7.6E-06 1.6E-10 60.9 7.4 103 34-144 4-114 (115)
129 cd04605 CBS_pair_MET2_assoc Th 98.2 6.3E-06 1.4E-10 60.7 6.6 100 33-144 4-109 (110)
130 cd04611 CBS_pair_PAS_GGDEF_DUF 98.2 4.9E-06 1.1E-10 61.2 6.0 103 33-144 3-110 (111)
131 cd04613 CBS_pair_SpoIVFB_EriC_ 98.2 6.5E-06 1.4E-10 60.7 6.6 104 33-144 3-113 (114)
132 cd04639 CBS_pair_26 The CBS do 98.1 5.5E-06 1.2E-10 61.1 5.8 101 34-144 4-110 (111)
133 cd04614 CBS_pair_1 The CBS dom 98.1 8.9E-06 1.9E-10 59.1 6.8 47 191-237 2-48 (96)
134 cd04599 CBS_pair_GGDEF_assoc2 98.1 1.2E-05 2.6E-10 58.5 7.4 98 34-143 4-103 (105)
135 cd04803 CBS_pair_15 The CBS do 98.1 7.7E-06 1.7E-10 61.3 6.5 105 33-144 3-121 (122)
136 cd04583 CBS_pair_ABC_OpuCA_ass 98.1 9.8E-06 2.1E-10 59.4 6.9 100 33-144 4-108 (109)
137 cd04622 CBS_pair_9 The CBS dom 98.1 1.6E-05 3.5E-10 58.7 8.1 105 33-144 3-112 (113)
138 cd04587 CBS_pair_CAP-ED_DUF294 98.1 9E-06 2E-10 60.0 6.6 105 33-144 3-112 (113)
139 cd04589 CBS_pair_CAP-ED_DUF294 98.1 1.1E-05 2.3E-10 59.6 7.0 104 33-144 3-110 (111)
140 cd04601 CBS_pair_IMPDH This cd 98.1 1.7E-05 3.7E-10 58.1 8.0 100 33-144 4-109 (110)
141 TIGR01303 IMP_DH_rel_1 IMP deh 98.1 6E-05 1.3E-09 70.5 13.3 101 31-145 96-201 (475)
142 cd04610 CBS_pair_ParBc_assoc T 98.1 1.5E-05 3.2E-10 58.2 7.5 98 33-144 4-106 (107)
143 cd04595 CBS_pair_DHH_polyA_Pol 98.1 7.9E-06 1.7E-10 60.2 6.0 101 33-144 4-109 (110)
144 cd04642 CBS_pair_29 The CBS do 98.1 1.3E-05 2.9E-10 60.7 7.4 51 87-144 75-125 (126)
145 cd04626 CBS_pair_13 The CBS do 98.1 1.1E-05 2.4E-10 59.5 6.5 102 33-143 3-109 (111)
146 cd04608 CBS_pair_PALP_assoc Th 98.1 1.9E-05 4.2E-10 60.1 8.0 51 190-240 2-52 (124)
147 PRK10892 D-arabinose 5-phospha 98.1 8.9E-06 1.9E-10 72.5 7.0 60 180-239 200-261 (326)
148 KOG1764 5'-AMP-activated prote 98.1 1.8E-05 4E-10 72.0 9.2 121 94-240 163-287 (381)
149 cd04582 CBS_pair_ABC_OpuCA_ass 98.1 2.2E-05 4.7E-10 57.3 7.9 98 33-144 3-105 (106)
150 cd04800 CBS_pair_CAP-ED_DUF294 98.1 1.5E-05 3.2E-10 58.7 7.0 103 33-144 3-110 (111)
151 cd04627 CBS_pair_14 The CBS do 98.1 8.3E-06 1.8E-10 61.6 5.7 51 86-143 71-121 (123)
152 cd04585 CBS_pair_ACT_assoc2 Th 98.0 7.2E-06 1.6E-10 61.2 5.0 56 82-144 66-121 (122)
153 cd04612 CBS_pair_SpoIVFB_EriC_ 98.0 1.7E-05 3.7E-10 58.3 6.9 103 34-144 4-110 (111)
154 cd04624 CBS_pair_11 The CBS do 98.0 2.3E-05 4.9E-10 57.8 7.6 50 191-240 2-51 (112)
155 cd04643 CBS_pair_30 The CBS do 98.0 2.1E-05 4.7E-10 58.3 7.3 50 191-240 2-51 (116)
156 TIGR03520 GldE gliding motilit 98.0 3.5E-05 7.5E-10 71.0 10.1 141 32-209 202-349 (408)
157 cd04633 CBS_pair_20 The CBS do 98.0 1.3E-05 2.8E-10 60.0 5.9 104 33-144 3-120 (121)
158 cd04631 CBS_pair_18 The CBS do 98.0 9E-06 2E-10 61.2 4.8 56 82-144 69-124 (125)
159 cd04802 CBS_pair_3 The CBS dom 98.0 2.8E-05 6E-10 57.4 7.1 103 34-144 4-111 (112)
160 cd04632 CBS_pair_19 The CBS do 98.0 3.7E-05 8E-10 58.3 7.7 49 191-239 2-50 (128)
161 cd04635 CBS_pair_22 The CBS do 98.0 1.1E-05 2.5E-10 60.4 4.7 57 81-144 65-121 (122)
162 cd04625 CBS_pair_12 The CBS do 98.0 1.3E-05 2.7E-10 59.2 4.8 104 33-144 3-111 (112)
163 PLN02274 inosine-5'-monophosph 98.0 3E-05 6.6E-10 73.1 8.4 108 29-147 106-222 (505)
164 cd04591 CBS_pair_EriC_assoc_eu 98.0 2.3E-05 5E-10 57.8 6.1 93 33-144 4-104 (105)
165 TIGR03415 ABC_choXWV_ATP choli 97.9 3.1E-05 6.8E-10 70.6 8.1 113 77-239 268-380 (382)
166 TIGR01137 cysta_beta cystathio 97.9 2.8E-05 6.2E-10 72.4 7.7 62 179-240 332-393 (454)
167 cd04584 CBS_pair_ACT_assoc Thi 97.9 2.6E-05 5.5E-10 58.3 6.1 104 33-144 3-120 (121)
168 cd04621 CBS_pair_8 The CBS dom 97.9 1.9E-05 4E-10 61.2 5.4 55 82-144 80-134 (135)
169 cd04629 CBS_pair_16 The CBS do 97.9 1.5E-05 3.2E-10 59.0 4.3 55 82-144 59-113 (114)
170 cd04586 CBS_pair_BON_assoc Thi 97.9 1.3E-05 2.9E-10 61.5 4.1 55 82-144 80-134 (135)
171 cd04602 CBS_pair_IMPDH_2 This 97.9 1.7E-05 3.7E-10 59.0 4.5 100 33-144 4-113 (114)
172 cd04636 CBS_pair_23 The CBS do 97.9 2.1E-05 4.6E-10 60.1 5.0 53 84-144 79-131 (132)
173 cd04590 CBS_pair_CorC_HlyC_ass 97.9 6.2E-05 1.3E-09 55.4 7.3 50 191-240 2-52 (111)
174 TIGR00393 kpsF KpsF/GutQ famil 97.9 2.5E-05 5.4E-10 67.5 6.0 58 182-239 155-213 (268)
175 cd04588 CBS_pair_CAP-ED_DUF294 97.9 2.3E-05 4.9E-10 57.6 4.9 100 35-144 5-109 (110)
176 COG4175 ProV ABC-type proline/ 97.9 2.9E-05 6.3E-10 68.1 6.1 117 77-240 268-384 (386)
177 PTZ00314 inosine-5'-monophosph 97.9 0.0002 4.4E-09 67.5 12.1 104 31-145 104-216 (495)
178 COG0517 FOG: CBS domain [Gener 97.8 5.8E-05 1.3E-09 55.9 6.7 104 31-143 7-117 (117)
179 cd04637 CBS_pair_24 The CBS do 97.8 2.8E-05 6.1E-10 58.3 4.7 55 83-144 67-121 (122)
180 cd04640 CBS_pair_27 The CBS do 97.8 7.1E-05 1.5E-09 56.8 7.0 46 191-236 2-47 (126)
181 TIGR01302 IMP_dehydrog inosine 97.8 0.00043 9.3E-09 64.6 13.3 101 32-145 89-199 (450)
182 smart00116 CBS Domain in cysta 97.8 4.9E-05 1.1E-09 46.5 4.9 46 95-145 2-47 (49)
183 cd02205 CBS_pair The CBS domai 97.8 0.00012 2.5E-09 53.1 7.7 51 191-241 2-52 (113)
184 PRK01862 putative voltage-gate 97.8 4E-05 8.7E-10 73.6 6.6 60 180-239 445-504 (574)
185 cd04594 CBS_pair_EriC_assoc_ar 97.8 3.8E-05 8.2E-10 56.2 4.8 94 36-144 6-103 (104)
186 cd04609 CBS_pair_PALP_assoc2 T 97.8 0.0001 2.2E-09 53.8 6.8 49 191-240 2-50 (110)
187 KOG0476 Cl- channel CLC-2 and 97.8 0.00023 4.9E-09 68.5 10.5 54 189-243 809-862 (931)
188 PRK15094 magnesium/cobalt effl 97.7 0.0001 2.2E-09 64.9 7.3 61 179-239 64-127 (292)
189 cd04634 CBS_pair_21 The CBS do 97.7 0.00012 2.6E-09 57.0 6.7 50 190-240 1-50 (143)
190 PRK11573 hypothetical protein; 97.7 0.00011 2.5E-09 67.6 7.4 106 31-145 197-309 (413)
191 cd04638 CBS_pair_25 The CBS do 97.7 0.00024 5.1E-09 51.9 7.3 53 84-144 53-105 (106)
192 cd04598 CBS_pair_GGDEF_assoc T 97.6 0.00021 4.5E-09 53.2 6.5 48 191-239 2-50 (119)
193 COG2905 Predicted signal-trans 97.6 0.00017 3.7E-09 67.3 7.0 104 34-146 160-269 (610)
194 COG1253 TlyC Hemolysins and re 97.3 0.00072 1.6E-08 62.7 7.8 105 31-146 216-327 (429)
195 COG4109 Predicted transcriptio 97.3 0.00071 1.5E-08 60.0 7.2 105 35-148 202-307 (432)
196 COG4536 CorB Putative Mg2+ and 97.3 0.0017 3.7E-08 58.1 8.8 104 33-145 212-322 (423)
197 COG2239 MgtE Mg/Co/Ni transpor 96.9 0.00088 1.9E-08 62.2 3.8 108 30-145 139-251 (451)
198 TIGR01186 proV glycine betaine 96.9 0.0017 3.7E-08 58.9 5.4 55 84-146 303-357 (363)
199 PRK10070 glycine betaine trans 96.4 0.0052 1.1E-07 56.5 5.4 57 84-148 338-394 (400)
200 KOG2550 IMP dehydrogenase/GMP 95.1 0.04 8.7E-07 50.1 5.2 58 81-145 169-226 (503)
201 COG4535 CorC Putative Mg2+ and 94.9 0.068 1.5E-06 45.3 5.7 102 33-145 79-187 (293)
202 KOG2118 Predicted membrane pro 94.7 0.033 7.2E-07 52.6 4.0 130 77-239 198-328 (498)
203 KOG0474 Cl- channel CLC-7 and 94.0 0.072 1.6E-06 50.9 4.4 56 83-145 690-745 (762)
204 TIGR03415 ABC_choXWV_ATP choli 92.8 0.17 3.6E-06 46.4 4.8 53 84-146 327-379 (382)
205 COG1125 OpuBA ABC-type proline 92.5 0.24 5.2E-06 42.8 5.0 99 123-237 205-308 (309)
206 KOG0476 Cl- channel CLC-2 and 90.9 0.3 6.5E-06 47.7 4.3 63 180-242 586-650 (931)
207 COG4175 ProV ABC-type proline/ 89.5 0.56 1.2E-05 41.8 4.5 48 94-147 336-383 (386)
208 COG1125 OpuBA ABC-type proline 85.3 1.6 3.5E-05 37.8 4.8 32 113-144 276-307 (309)
209 KOG0475 Cl- channel CLC-3 and 83.8 2 4.4E-05 41.3 5.1 59 79-145 635-693 (696)
210 cd02958 UAS UAS family; UAS is 65.7 12 0.00026 27.5 4.3 62 182-243 43-112 (114)
211 PRK11388 DNA-binding transcrip 64.0 16 0.00035 35.7 5.9 97 113-230 65-162 (638)
212 PF05198 IF3_N: Translation in 59.6 26 0.00056 24.3 4.7 28 214-241 13-40 (76)
213 smart00594 UAS UAS domain. 51.5 22 0.00047 26.7 3.6 58 181-238 52-121 (122)
214 PF14827 Cache_3: Sensory doma 41.8 29 0.00063 25.7 2.9 17 215-231 93-109 (116)
215 COG2216 KdpB High-affinity K+ 40.9 37 0.00081 32.5 4.0 38 199-237 413-450 (681)
216 PF14827 Cache_3: Sensory doma 39.3 32 0.00069 25.4 2.8 18 122-139 92-109 (116)
217 PF05198 IF3_N: Translation in 37.3 65 0.0014 22.3 3.9 25 121-145 12-36 (76)
218 PF13365 Trypsin_2: Trypsin-li 30.5 39 0.00085 24.2 2.0 19 118-136 102-120 (120)
219 PF13098 Thioredoxin_2: Thiore 28.3 54 0.0012 23.5 2.5 36 203-238 73-112 (112)
220 PF02743 Cache_1: Cache domain 27.5 55 0.0012 22.1 2.2 18 215-232 18-35 (81)
221 cd03015 PRX_Typ2cys Peroxiredo 27.1 1.4E+02 0.003 23.5 4.9 34 213-246 120-161 (173)
222 COG2216 KdpB High-affinity K+ 25.9 84 0.0018 30.2 3.7 31 113-144 419-449 (681)
223 PF14044 NETI: NETI protein 25.8 87 0.0019 20.4 2.7 23 193-215 2-24 (57)
224 TIGR03278 methan_mark_10 putat 22.9 1.9E+02 0.0041 26.8 5.4 81 121-242 306-392 (404)
225 CHL00199 infC translation init 21.3 1.1E+02 0.0024 25.0 3.2 21 216-236 27-47 (182)
226 PHA00673 acetyltransferase dom 21.0 2E+02 0.0042 22.9 4.5 33 199-231 40-72 (154)
227 PRK10026 arsenate reductase; P 20.9 4.1E+02 0.0088 20.7 7.4 108 95-238 6-116 (141)
228 PF13673 Acetyltransf_10: Acet 20.6 1.5E+02 0.0033 20.9 3.6 28 113-140 35-62 (117)
229 PRK00137 rplI 50S ribosomal pr 20.4 1.9E+02 0.0041 22.6 4.3 23 219-241 83-105 (147)
230 cd03409 Chelatase_Class_II Cla 20.2 2.9E+02 0.0063 19.2 5.0 46 198-244 44-89 (101)
No 1
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.81 E-value=1.8e-19 Score=150.40 Aligned_cols=125 Identities=34% Similarity=0.487 Sum_probs=113.9
Q ss_pred CCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCC
Q 025613 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM 158 (250)
Q Consensus 79 ~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~ 158 (250)
.....+++++|.+ +++++.+++|+.++ .+.|.++++.+.||+|++ +++|++|..|+..+.+..
T Consensus 168 siPk~~V~~~~s~--~~i~v~~d~tl~ea-----ak~f~~~~i~GaPVvd~d-k~vGiit~~dI~~aia~g--------- 230 (294)
T COG2524 168 SIPKEKVKNLMSK--KLITVRPDDTLREA-----AKLFYEKGIRGAPVVDDD-KIVGIITLSDIAKAIANG--------- 230 (294)
T ss_pred ecCcchhhhhccC--CceEecCCccHHHH-----HHHHHHcCccCCceecCC-ceEEEEEHHHHHHHHHcC---------
Confidence 4456689999999 99999999999999 999999999999999965 999999999999764322
Q ss_pred CCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613 159 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 238 (250)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l 238 (250)
.....++++|.++++++++|+.+.+|+++|..+++.++.|+|.+|+++|+||+.||+..+
T Consensus 231 --------------------~~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~i 290 (294)
T COG2524 231 --------------------NLDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRI 290 (294)
T ss_pred --------------------CccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHh
Confidence 246789999999999999999999999999999999999999999999999999999987
Q ss_pred Hh
Q 025613 239 LQ 240 (250)
Q Consensus 239 ~~ 240 (250)
..
T Consensus 291 a~ 292 (294)
T COG2524 291 AG 292 (294)
T ss_pred hc
Confidence 64
No 2
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.77 E-value=2.7e-18 Score=146.02 Aligned_cols=199 Identities=25% Similarity=0.313 Sum_probs=145.4
Q ss_pred ccCCCCCCCCCCccccc--ccceecCCCChhHHHHHhhhcCCeee-eeCCCcccccccccccCCCCCCCCCceecccccc
Q 025613 15 LRAPPAGRTSGRTSFAL--QLPCLLLSRPGCRVFSVLATSSDRVS-ALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT 91 (250)
Q Consensus 15 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~ 91 (250)
=.||-+|..++-+.-.+ -.|.........++-+.+.++...+- .+.+...+-.+..+.. ..+....++..++|.+
T Consensus 176 r~YPh~~~~p~an~HgT~Dppp~~rvgfs~~Dld~aL~~~~E~lDIdrddLe~llr~~elqa--~~R~~~~LtcadIMSr 253 (382)
T COG3448 176 RTYPHHWLSPPANLHGTADPPPSQRVGFSSEDLDAALQRLGETLDIDRDDLERLLRETELQA--LRRRMGELTCADIMSR 253 (382)
T ss_pred CCCCCccCCCcccccCCCCCCchhccCCCHHHHHHHHHhcCceecCCHHHHHHHHHHHHHHH--HHHHhccccHHHhcCc
Confidence 34555455554332222 23344445566667777776655222 2222211111111111 1456678899999999
Q ss_pred CCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHH
Q 025613 92 KEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNE 171 (250)
Q Consensus 92 ~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (250)
+++++..++++.+| .+.|.+++++.+||+|++.+++|+|+..||.... .|.-
T Consensus 254 --dVvtv~~~ts~dhA-----~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a------------------~~~p--- 305 (382)
T COG3448 254 --DVVTVSTDTSIDHA-----RKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHA------------------RPSP--- 305 (382)
T ss_pred --cceecCCcCChHHH-----HHHHHHcCcccccccccccceeeeeeHHHHhhcc------------------Ccch---
Confidence 99999999999999 9999999999999999999999999999999631 1211
Q ss_pred HHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhhhhh
Q 025613 172 VQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHA 244 (250)
Q Consensus 172 ~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~~~~ 244 (250)
++++ .......++.+|+++..|+.++++..+++-.|.+.+.+++||+|++|+++||||..|++.++...+..
T Consensus 306 ~qrl-r~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~~~~ 377 (382)
T COG3448 306 FQRL-RFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRNWSQ 377 (382)
T ss_pred HHHh-hccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHHHHH
Confidence 1222 13456779999999999999999999999999999999999999999999999999999998876644
No 3
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.73 E-value=1.8e-17 Score=143.98 Aligned_cols=127 Identities=31% Similarity=0.533 Sum_probs=118.0
Q ss_pred CCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCC
Q 025613 81 GVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP 160 (250)
Q Consensus 81 ~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~ 160 (250)
.-++|+|+|+|.++...+.+++++++. .++..++++++|||+|...+++|+|+.+|+..
T Consensus 186 dI~~Vedi~~P~~~~~yL~~~d~v~d~-----~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~---------------- 244 (432)
T COG4109 186 DIITVEDIMTPLEDTSYLRETDTVEDW-----LDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLD---------------- 244 (432)
T ss_pred heeeHHHhccccccceeccccccHHHH-----HHHHHHcCCCccceecccceEEEEEEehhhhc----------------
Confidence 456899999988899999999999999 99999999999999999999999999999985
Q ss_pred CcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 161 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
..++.++..+|+++|+++.+.+++..+.++|...++..+||++++.+++|+||+.|+++.+..
T Consensus 245 -----------------~~~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 245 -----------------KKPSTTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQM 307 (432)
T ss_pred -----------------CCCCccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999999877
Q ss_pred hhhhh
Q 025613 241 IKHAT 245 (250)
Q Consensus 241 ~~~~~ 245 (250)
.+.+.
T Consensus 308 ~q~qp 312 (432)
T COG4109 308 IQRQP 312 (432)
T ss_pred hccCC
Confidence 76554
No 4
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.71 E-value=1.5e-16 Score=119.76 Aligned_cols=111 Identities=24% Similarity=0.337 Sum_probs=96.7
Q ss_pred eeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHH
Q 025613 95 LHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQK 174 (250)
Q Consensus 95 ~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (250)
+.++.+++++.++ ++.|.++++..+||+|++|+++|+|+..|+.+.....+
T Consensus 3 ~~~v~~~~~l~~a-----~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~------------------------ 53 (114)
T cd04619 3 LAKIDVNATLQRA-----AKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCG------------------------ 53 (114)
T ss_pred eEEECCCCcHHHH-----HHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcC------------------------
Confidence 5778999999999 99999999999999999999999999999986532100
Q ss_pred HHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 175 LLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 175 ~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
......++.++|.++++++.+++++.+|++.|.+++..++||+|++|+++|+||++|+++
T Consensus 54 --~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 54 --GPGCTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred --CCcccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 012346788999999999999999999999999999999999998899999999999975
No 5
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.71 E-value=1.7e-16 Score=119.05 Aligned_cols=109 Identities=26% Similarity=0.350 Sum_probs=95.1
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++.++++++++.++ ++.|.+++...+||+|++|+++|+|+..|+.+...
T Consensus 2 ~~~~v~~~~~l~~a-----~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~-------------------------- 50 (111)
T cd04603 2 QTVSVNCENPLREA-----IKMINELGARAVVVVDEENKVLGQVTLSDLLEIGP-------------------------- 50 (111)
T ss_pred ceEEeCCCCcHHHH-----HHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhcc--------------------------
Confidence 36788999999999 99999889999999998899999999999986310
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
......++.++|..++.++.+++++.+|++.|.+++.+++||+|++|+++|+||..|+++
T Consensus 51 ---~~~~~~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 51 ---NDYETLKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred ---ccccccChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 011134688899888999999999999999999999999999998899999999999985
No 6
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.71 E-value=1e-16 Score=140.57 Aligned_cols=131 Identities=21% Similarity=0.360 Sum_probs=113.4
Q ss_pred CCCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCC
Q 025613 77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRAD 155 (250)
Q Consensus 77 ~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~ 155 (250)
...+...+++++|+++.++.++++++++.++ ++.+.+++++.+||++++ ++++|+|+.+||+.....
T Consensus 61 vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~-----~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~------- 128 (292)
T PRK15094 61 VMDIADQRVRDIMIPRSQMITLKRNQTLDEC-----LDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS------- 128 (292)
T ss_pred HhccCCCEEeEEccchHHEEEEeCCCCHHHH-----HHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhc-------
Confidence 3467788999999998789999999999999 999999999999999876 789999999999864210
Q ss_pred CCCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHH
Q 025613 156 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 235 (250)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil 235 (250)
......+.++|.+ ++++++++++.++++.|++.+.+.+||+|++|.++|+||.+||+
T Consensus 129 ----------------------~~~~~~l~~l~r~-~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIl 185 (292)
T PRK15094 129 ----------------------DAEAFSMDKVLRQ-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDIL 185 (292)
T ss_pred ----------------------cCCcCCHHHHcCC-CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHH
Confidence 0112347788876 66899999999999999999999999999999999999999999
Q ss_pred HHHHhhh
Q 025613 236 RAALQIK 242 (250)
Q Consensus 236 ~~l~~~~ 242 (250)
+.+....
T Consensus 186 e~ivGei 192 (292)
T PRK15094 186 ELIVGEI 192 (292)
T ss_pred HHHhCCC
Confidence 9988654
No 7
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.70 E-value=1e-16 Score=142.46 Aligned_cols=121 Identities=25% Similarity=0.286 Sum_probs=107.6
Q ss_pred CceeccccccCCc--eeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCC
Q 025613 82 VYTVGDFMTTKEE--LHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF 159 (250)
Q Consensus 82 ~~~v~~~m~~~~~--~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~ 159 (250)
..+|+++|++ + ++++++++++.++ .+.|.+++...+||+|++|+++|+|+..|+.+++...
T Consensus 196 ~~~V~~im~~--~~~~~~v~~~~sv~~a-----~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~---------- 258 (321)
T PRK11543 196 LNKVHHLMRR--DDAIPQVALTASVMDA-----MLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGG---------- 258 (321)
T ss_pred HhHHHHHhcc--CCCCcEeCCCCCHHHH-----HHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCC----------
Confidence 6789999998 6 9999999999999 9999888889999999999999999999998653210
Q ss_pred CCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613 160 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237 (250)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~ 237 (250)
.....++.++|.++++++.+++++.+|++.|.+.+...+||||++|+++|+||+.|++++
T Consensus 259 ------------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 259 ------------------GALTTPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred ------------------CCcCCcHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 112456889999999999999999999999999999999999988999999999999864
No 8
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.70 E-value=1.9e-16 Score=144.96 Aligned_cols=128 Identities=21% Similarity=0.261 Sum_probs=113.0
Q ss_pred CCCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCC
Q 025613 77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRAD 155 (250)
Q Consensus 77 ~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~ 155 (250)
.-.+...+++|+|+++.++.+++.+++++++ ++.+.+++++++||++++ ++++|+|+.+|++....
T Consensus 185 vl~l~~~~v~diMtpr~~v~~l~~~~~~~e~-----~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~-------- 251 (408)
T TIGR03520 185 IVSFGNTDTKQVMRPRLDIFALDIETSFSEI-----IPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN-------- 251 (408)
T ss_pred HhccCCCEeeeeCCchHhEEEEECCCCHHHH-----HHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc--------
Confidence 4577888999999998899999999999999 999999999999999865 68999999999985311
Q ss_pred CCCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHH
Q 025613 156 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 235 (250)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil 235 (250)
....++.++|.+ +.+|++++++.++++.|++.+.+.++|+|++|.++|+||.+||+
T Consensus 252 -----------------------~~~~~l~~~~~~-~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDil 307 (408)
T TIGR03520 252 -----------------------KKNFDWQSLLRE-PYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDII 307 (408)
T ss_pred -----------------------cCCCCHHHHcCC-CeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHH
Confidence 112456778865 88999999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 025613 236 RAALQI 241 (250)
Q Consensus 236 ~~l~~~ 241 (250)
+.+...
T Consensus 308 eeivge 313 (408)
T TIGR03520 308 EEIVGD 313 (408)
T ss_pred HHHhCC
Confidence 998644
No 9
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.70 E-value=1.6e-16 Score=141.65 Aligned_cols=124 Identities=26% Similarity=0.352 Sum_probs=106.7
Q ss_pred CCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCC
Q 025613 81 GVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP 160 (250)
Q Consensus 81 ~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~ 160 (250)
..++++++|.+.++++++++++++.++ ++.|.+++...+||+|++|+++|+||..|+.+......
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a-----~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~---------- 264 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDA-----LLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGI---------- 264 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHH-----HHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCC----------
Confidence 677899999853368999999999999 99999888888888898999999999999986422110
Q ss_pred CcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613 161 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237 (250)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~ 237 (250)
.....++.++|.++++++.+++++.+|++.|.+++++++||++ +|+++|+||+.|++++
T Consensus 265 -----------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 265 -----------------DLRQASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred -----------------CcccCCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 1124679999999999999999999999999999999999998 6899999999999875
No 10
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.70 E-value=8.1e-17 Score=125.54 Aligned_cols=123 Identities=24% Similarity=0.365 Sum_probs=106.9
Q ss_pred CCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCC
Q 025613 81 GVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP 160 (250)
Q Consensus 81 ~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~ 160 (250)
..+++..+|+. +++.+.+++++.++ +++|++++++++||+++ |+++|-||.+++.+++...+
T Consensus 63 ~~ita~~iM~s--pvv~v~pdDsi~~v-----v~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~---------- 124 (187)
T COG3620 63 TRITAKTIMHS--PVVSVSPDDSISDV-----VNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGM---------- 124 (187)
T ss_pred ceEeHhhhccC--CeeEECchhhHHHH-----HHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccc----------
Confidence 45688999999 99999999999999 99999999999999996 89999999999998642211
Q ss_pred CcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 161 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
+...+..+.++|..++++|++++++..+.+++..++. +.|++ +|+++||||+.||++.+..
T Consensus 125 ----------------e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~A--VlV~e-~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 125 ----------------ESIRSLRVREVMGEPFPTVSPDESLNVISQLLEEHPA--VLVVE-NGKVVGIITKADIMKLLAG 185 (187)
T ss_pred ----------------cchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhCCe--EEEEe-CCceEEEEeHHHHHHHHhc
Confidence 1334678999999999999999999999999976654 77885 8999999999999998765
No 11
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.69 E-value=4.8e-16 Score=144.32 Aligned_cols=123 Identities=28% Similarity=0.411 Sum_probs=110.3
Q ss_pred CCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCC
Q 025613 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM 158 (250)
Q Consensus 79 ~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~ 158 (250)
.+..++++++|.. ++.++++++++.++ ++.|.++++.++||+|++|+++|+|+.+||...
T Consensus 85 ~l~~VKv~~iMi~--~pvtv~~d~tv~eA-----~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~------------- 144 (479)
T PRK07807 85 VVAWVKSRDLVFD--TPVTLSPDDTVGDA-----LALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV------------- 144 (479)
T ss_pred HHhhccccccccc--CCeEECCCCCHHHH-----HHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC-------------
Confidence 4456678899988 89999999999999 999999999999999999999999999999642
Q ss_pred CCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613 159 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 238 (250)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l 238 (250)
....++.++|+++++++++++++.+|++.|.+++.+.+||+|++|+++|+||++||++..
T Consensus 145 --------------------~~~~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~ 204 (479)
T PRK07807 145 --------------------DRFTQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRAT 204 (479)
T ss_pred --------------------ccCCCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHh
Confidence 123569999999999999999999999999999999999999889999999999999876
Q ss_pred Hhh
Q 025613 239 LQI 241 (250)
Q Consensus 239 ~~~ 241 (250)
...
T Consensus 205 ~~~ 207 (479)
T PRK07807 205 IYT 207 (479)
T ss_pred hCC
Confidence 543
No 12
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.69 E-value=4.1e-16 Score=117.17 Aligned_cols=111 Identities=26% Similarity=0.381 Sum_probs=96.0
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEV 172 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (250)
+++++++++++.++ ++.|.++++..+||+|++ |+++|+|+..|+++++...+.
T Consensus 2 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~--------------------- 55 (114)
T cd04630 2 NVVTIDGLATVAEA-----LQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGR--------------------- 55 (114)
T ss_pred CcEEECCCCcHHHH-----HHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCC---------------------
Confidence 57889999999999 999999999999999987 899999999999875321110
Q ss_pred HHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 173 QKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 173 ~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
.....++.++|.++++++++++++.++++.|.+.+...+||+|+ |+++|+||+.|+++
T Consensus 56 -----~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 56 -----DPDRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred -----CCCccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 11235788999888999999999999999999999999999996 99999999999975
No 13
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.69 E-value=2.9e-16 Score=115.75 Aligned_cols=94 Identities=32% Similarity=0.468 Sum_probs=86.0
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEV 172 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (250)
.+.++++++++.++ .+.|.+++++++||+|++ |+++|+||..|+.+..
T Consensus 2 ~~~~v~~~~~l~~a-----~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~-------------------------- 50 (98)
T cd04618 2 KLVVFDTKLPVKKA-----FNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL-------------------------- 50 (98)
T ss_pred eEEEECCCCcHHHH-----HHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe--------------------------
Confidence 47899999999999 999999999999999975 8999999999998530
Q ss_pred HHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHHHH
Q 025613 173 QKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD-GKLVGIITRGNVVR 236 (250)
Q Consensus 173 ~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~-g~~vGiIt~~Dil~ 236 (250)
. +.++.+++++.+|++.|.+++.+++||+|++ |+++|+||.+|++.
T Consensus 51 ----------------~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 51 ----------------R--LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred ----------------e--eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 0 7889999999999999999999999999987 89999999999975
No 14
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.68 E-value=5.6e-16 Score=116.51 Aligned_cols=112 Identities=31% Similarity=0.412 Sum_probs=96.3
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
+++++++++++.++ ++.|.+.++..+||+|++|+++|+|+..||.+......
T Consensus 2 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~----------------------- 53 (115)
T cd04593 2 PPPVLSATTPLREA-----AEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADE----------------------- 53 (115)
T ss_pred CCcEeCCCCCHHHH-----HHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhccc-----------------------
Confidence 56788999999999 99999999999999998899999999999987532110
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC--CcEEEEEehHHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD--GKLVGIITRGNVVRA 237 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~--g~~vGiIt~~Dil~~ 237 (250)
.....++.++|.++++++.+++++.++++.|.+++..++||+|++ |+++|+||+.|++++
T Consensus 54 ----~~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 54 ----AGEPSAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLLA 115 (115)
T ss_pred ----ccccccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhcC
Confidence 112344788899999999999999999999999999999999976 799999999999863
No 15
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.68 E-value=6.9e-16 Score=117.07 Aligned_cols=119 Identities=21% Similarity=0.352 Sum_probs=93.5
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++.++++++++.++ ++.|.+++++.+||+|++|+++|+++.+||..+...... +....+..
T Consensus 2 ~~~~i~~~~~l~~a-----~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~--------------~~~~~~~~ 62 (120)
T cd04641 2 NIATARPDTPLIDV-----LDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAY--------------NNLDLTVG 62 (120)
T ss_pred CcEEEcCCCCHHHH-----HHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCcc--------------ccccCCHH
Confidence 57889999999999 999999999999999989999999999999975321100 00000000
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~ 237 (250)
. .....+.|..++.++++++++.++++.|.+.+.+.+||+|++|+++|+||++|++++
T Consensus 63 ~------~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~~ 120 (120)
T cd04641 63 E------ALERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQF 120 (120)
T ss_pred H------HHhhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhcC
Confidence 0 011234566678899999999999999999999999999988999999999999863
No 16
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.68 E-value=5.8e-16 Score=117.25 Aligned_cols=111 Identities=30% Similarity=0.373 Sum_probs=94.7
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++.++++++++.++ ++.|.+++...+||+|++|+++|+|+..|+.+......
T Consensus 2 ~~~~~~~~~~~~~a-----~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~----------------------- 53 (118)
T cd04617 2 PPVVVRENTSVYDA-----IVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA----------------------- 53 (118)
T ss_pred CCEEECCCCCHHHH-----HHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC-----------------------
Confidence 46789999999999 99999899999999998899999999999987532110
Q ss_pred HHHhccCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC---CcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDAD---GKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~---g~~vGiIt~~Dil~ 236 (250)
.....++.++|.+ +++++++++++.++++.|.+++.+.+||+|++ |+++|+||+.|+++
T Consensus 54 ----~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 54 ----DLQKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred ----CccCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 1124567788874 68899999999999999999999999999876 69999999999875
No 17
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.68 E-value=5.8e-16 Score=117.72 Aligned_cols=121 Identities=34% Similarity=0.597 Sum_probs=98.7
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++++++++.++.++ .+.|.++++.++||++++|+++|+|+..||...+...... +.+..+
T Consensus 3 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~-----------~~~~~~---- 62 (124)
T cd04600 3 DVVTVTPDTSLEEA-----WALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRR-----------PLRGRL---- 62 (124)
T ss_pred CcEEeCCCCCHHHH-----HHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccc-----------hhhhhh----
Confidence 67889999999999 9999999999999999889999999999998653211100 000000
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
. ......++.++|.++++++.+++++.++++.|.+.+.+.+||+|++|+++|+||+.|+++
T Consensus 63 ~--~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 63 R--GRDKPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred h--cccccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 0 012345788999999999999999999999999999999999998899999999999986
No 18
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.68 E-value=1e-15 Score=141.92 Aligned_cols=188 Identities=30% Similarity=0.440 Sum_probs=135.0
Q ss_pred CeeeeccccccccccCCCCCCCCCCcccccccceecCCC---ChhHHHHHhhhcCC-eeeeeCCCcccccccccccCCCC
Q 025613 2 DSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSR---PGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAA 77 (250)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
|-+++|.-+.+.--...+..++ +.++.+.+|++.+.. +-.+....|.+... -+....-++....+.
T Consensus 6 dv~l~p~~~~~~~~~~~~~~~~--~~~~~l~~p~~s~~mdtvTe~ema~~ma~~gg~GvI~~n~~~e~q~~~-------- 75 (450)
T TIGR01302 6 DVLLLPGFIDVEPDDVDLSTRI--TRNIKLNIPILSSPMDTVTESRMAIAMAREGGIGVIHRNMSIEEQAEQ-------- 75 (450)
T ss_pred ceEecccccccCcccccccccc--ccccCcCCCeeecCCCccCHHHHHHHHHhcCCCceeecCCCHHHHHHH--------
Confidence 5567777555433222222222 236778888887633 33344455554433 222211111111111
Q ss_pred CCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC---CcEEEEEehHHHHhhhhccCCCCC
Q 025613 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRA 154 (250)
Q Consensus 78 ~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~---g~~~GiVt~~dL~~~~~~~~~~~~ 154 (250)
.-...+.++.|.. ++.++++++++.++ ++.|.+++++++||+|++ ++++|+|+.+||+..
T Consensus 76 -V~~Vk~~~~~~~~--~~vtl~~~~tv~ea-----l~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~--------- 138 (450)
T TIGR01302 76 -VKRVKRAENGIIS--DPVTISPETTVADV-----LELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFV--------- 138 (450)
T ss_pred -HhhhccccCceec--CceEeCCCCCHHHH-----HHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhh---------
Confidence 1123356777887 89999999999999 999999999999999987 799999999999743
Q ss_pred CCCCCCCcccchhchHHHHHHHhccCCCccccccc-CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHH
Q 025613 155 DNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMT-PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGN 233 (250)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~D 233 (250)
.....++.++|+ .+++++++++++.++++.|.+++.+.+||+|++|+++|+||++|
T Consensus 139 -----------------------~~~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~D 195 (450)
T TIGR01302 139 -----------------------KDKGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKD 195 (450)
T ss_pred -----------------------hcCCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHH
Confidence 112457899998 48999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 025613 234 VVRAAL 239 (250)
Q Consensus 234 il~~l~ 239 (250)
|++.+.
T Consensus 196 Il~~~~ 201 (450)
T TIGR01302 196 IVKRRK 201 (450)
T ss_pred hhhccc
Confidence 999864
No 19
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.68 E-value=6e-16 Score=115.15 Aligned_cols=105 Identities=30% Similarity=0.495 Sum_probs=95.3
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++.++.+++++.++ ++.|.+++...+||+|++|+++|+|+..|+...
T Consensus 3 ~~~~~~~~~~~~~a-----~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~---------------------------- 49 (108)
T cd04596 3 DTGYLTTTDTVKDW-----HELNKETGHSRFPVVDEKNKVVGIVTSKDVAGK---------------------------- 49 (108)
T ss_pred ccEEeCCCCCHHHH-----HHHHHHcCCCceeEECCCCeEEEEecHHHHhcc----------------------------
Confidence 67889999999999 999999888899999988999999999999842
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
....++.++|..++.++++++++.++++.|.+.+...+||++++|+++|+||..|+++
T Consensus 50 -----~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 50 -----DPDTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred -----cccccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 1235688899888999999999999999999999999999998899999999999975
No 20
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.67 E-value=4e-16 Score=148.91 Aligned_cols=131 Identities=21% Similarity=0.279 Sum_probs=113.2
Q ss_pred CCCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCC
Q 025613 77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN 156 (250)
Q Consensus 77 ~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~ 156 (250)
...+..++++|+|++ +..++++++++.++ .+.+.+++.+.+||+|++|+++|+|+.+|+.+.+....
T Consensus 441 ~~~L~~~~V~dim~~--~~~~v~~~~tl~ea-----~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~------ 507 (574)
T PRK01862 441 RERLRTTQMRELIQP--AQTVVPPTASVADM-----TRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKR------ 507 (574)
T ss_pred hhHHhhCcHHHHhcC--CCceeCCCCCHHHH-----HHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhccc------
Confidence 446677899999998 78899999999999 99999999999999999999999999999986421100
Q ss_pred CCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC--CcEEEEEehHHH
Q 025613 157 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD--GKLVGIITRGNV 234 (250)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~--g~~vGiIt~~Di 234 (250)
.....++.++|+++++++++++++.++++.|.+++.+.+||+|++ ++++|+||++|+
T Consensus 508 ---------------------~~~~~~v~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DI 566 (574)
T PRK01862 508 ---------------------DTTDKTAADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSL 566 (574)
T ss_pred ---------------------ccccchHHHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHH
Confidence 112357889999999999999999999999999999999999876 489999999999
Q ss_pred HHHHHhh
Q 025613 235 VRAALQI 241 (250)
Q Consensus 235 l~~l~~~ 241 (250)
++++.+.
T Consensus 567 l~~l~~~ 573 (574)
T PRK01862 567 LDAYRRM 573 (574)
T ss_pred HHHHHhh
Confidence 9998764
No 21
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.67 E-value=1.3e-15 Score=113.51 Aligned_cols=111 Identities=36% Similarity=0.630 Sum_probs=95.6
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++..++++.++.++ ++.|.+.++..+||+|++|+++|+++..|+.+++...+.
T Consensus 2 ~~~~i~~~~~~~~~-----~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~---------------------- 54 (113)
T cd04623 2 DVITVRPDATVAEA-----AKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGA---------------------- 54 (113)
T ss_pred CCEEECCCCcHHHH-----HHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCC----------------------
Confidence 56788999999999 999999999999999988999999999999875321110
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
.....++.++|.+++.++.+++++.++++.|.+.+.+++||+++ |+++|+||.+|+++
T Consensus 55 ----~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 55 ----SALDTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred ----CccccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 11235788999888999999999999999999999999999996 99999999999976
No 22
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.66 E-value=1.5e-15 Score=112.53 Aligned_cols=106 Identities=34% Similarity=0.524 Sum_probs=94.9
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++..+.++.++.++ ++.|.+.++..+||+|++|+++|+|+..|+.+..
T Consensus 3 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~--------------------------- 50 (109)
T cd04583 3 NPVTITPDRTLAEA-----IKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAY--------------------------- 50 (109)
T ss_pred CCEEECCCCCHHHH-----HHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHh---------------------------
Confidence 56788999999999 9999998999999999889999999999998641
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
....++.++|...++++.+++++.++++.|.+.+..++||++++|+++|+||++|+++
T Consensus 51 -----~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 51 -----KEAKSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred -----hcCCcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 1234678889888999999999999999999999999999998899999999999875
No 23
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.66 E-value=1e-15 Score=114.08 Aligned_cols=109 Identities=30% Similarity=0.450 Sum_probs=95.5
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++.++.+++++.++ ++.|.+.+...+||++++|+++|+|+..|+.+....
T Consensus 2 ~~~~v~~~~~i~e~-----~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~------------------------- 51 (111)
T cd04639 2 HFETLSPADTLDDA-----ADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAE------------------------- 51 (111)
T ss_pred CceEcCCCCcHHHH-----HHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHh-------------------------
Confidence 46788999999999 999988888999999988999999999999865321
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
.....++.++|..+++++.+++++.++++.|.+++..++||++++|+++|+||+.|+.+
T Consensus 52 ----~~~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 52 ----GGPDAPVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred ----cCCCCcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 11234688899888999999999999999999999999999997799999999999975
No 24
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.66 E-value=2.2e-15 Score=112.09 Aligned_cols=107 Identities=29% Similarity=0.538 Sum_probs=94.9
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++.++++++++.++ ++.|.++++..+||+|++|+++|+++..++++...
T Consensus 3 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~-------------------------- 51 (110)
T cd04605 3 PVVTISEDASIKEA-----AKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVA-------------------------- 51 (110)
T ss_pred CCEEECCCCCHHHH-----HHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHh--------------------------
Confidence 57889999999999 99999999999999998899999999999986421
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
....++.++|.+++.++.+++++.++++.|.+.+...+||++++|+++|+||+.|+++
T Consensus 52 -----~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 52 -----RDKKSVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred -----hCccCHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 1123478889888999999999999999999999999999998899999999999965
No 25
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.66 E-value=4.6e-16 Score=119.39 Aligned_cols=113 Identities=26% Similarity=0.274 Sum_probs=95.6
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++.++++++++.++ ++.|.++++..+||+|++|+++|+|+..|+++......
T Consensus 3 ~~~~v~~~~~v~~a-----~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~----------------------- 54 (124)
T cd04608 3 APVTVLPTVTCAEA-----IEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGK----------------------- 54 (124)
T ss_pred CCEEECCCCCHHHH-----HHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhc-----------------------
Confidence 57889999999999 99999999999999998899999999999986432111
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHH---------cCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLE---------TKYRRLPVVDADGKLVGIITRGNVVRAA 238 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~---------~~~~~lpVVd~~g~~vGiIt~~Dil~~l 238 (250)
.....++.++|.+++.++.+++++.++.++|.. .+...+||++++|+++|+||+.|+++++
T Consensus 55 ----~~~~~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 55 ----VQPSDPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSYI 124 (124)
T ss_pred ----cCCCCcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhhC
Confidence 224578999999999999999999999996533 2566788898889999999999999863
No 26
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.66 E-value=1.8e-15 Score=111.83 Aligned_cols=104 Identities=25% Similarity=0.426 Sum_probs=93.1
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++++++++.++.++ ++.|.+++...+||+|++|+++|+++..|+.+..
T Consensus 2 ~~~~v~~~~~~~~a-----~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~--------------------------- 49 (106)
T cd04582 2 EPITVRPDDPLSDA-----LGLMDDSDLRALTVVDADGQPLGFVTRREAARAS--------------------------- 49 (106)
T ss_pred CCcEecCCCcHHHH-----HHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc---------------------------
Confidence 56789999999999 9999999989999999889999999999998531
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
..++.++|.+.+.++.+++++.++++.|.+.+...+||+|++|+++|+||+.|+++
T Consensus 50 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 50 -------GGCCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred -------ccchhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 12467888888888999999999999999999999999998899999999999975
No 27
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.65 E-value=2e-15 Score=112.85 Aligned_cols=110 Identities=26% Similarity=0.475 Sum_probs=95.2
Q ss_pred eeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHH
Q 025613 95 LHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQK 174 (250)
Q Consensus 95 ~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (250)
+..+.+++++.++ ++.|.+.+...+||+|++|+++|+|+..|+.+.....
T Consensus 3 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~------------------------- 52 (113)
T cd04615 3 PSCVVLNTDIARA-----VAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALES------------------------- 52 (113)
T ss_pred CEEeeCCCcHHHH-----HHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhh-------------------------
Confidence 5778999999999 9999999999999999889999999999998642111
Q ss_pred HHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 175 LLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 175 ~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
......++.++|.+++.++.+++++.++++.|.+.+...+||+|++|+++|+||+.|+++
T Consensus 53 --~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 53 --EELKDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred --hhhcCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 012345788899888999999999999999999999999999998899999999999974
No 28
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.65 E-value=1.5e-15 Score=113.95 Aligned_cols=114 Identities=31% Similarity=0.432 Sum_probs=93.9
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
+++++++++++.++ ++.|.++++..+||+|++|+++|+|+..|+.++...... ..+.
T Consensus 2 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~------------~~~~------ 58 (116)
T cd04643 2 EVAYVQDTNTLRHA-----LLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLEN------------LDLE------ 58 (116)
T ss_pred CcEEECCCCcHHHH-----HHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCc------------hhHH------
Confidence 57889999999999 999999999999999988999999999999876421110 0000
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
.....++.++|.+++.++.+++++.+|++.|.+.+ .+||++++|+++|+||..|+++
T Consensus 59 ----~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 59 ----RLVDLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred ----HHhCCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 00145688999989999999999999999998755 5899998899999999999986
No 29
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.65 E-value=1.8e-15 Score=112.86 Aligned_cols=111 Identities=34% Similarity=0.563 Sum_probs=96.6
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
+++++++++++.++ ++.|.+.++..+||+|++|+++|+|+..||.++.....
T Consensus 2 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~----------------------- 53 (114)
T cd04613 2 DVVTIPEDTPLNEL-----LDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPS----------------------- 53 (114)
T ss_pred CceeeCCCCcHHHH-----HHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhccc-----------------------
Confidence 57789999999999 99999999999999998899999999999987532100
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA-DGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~-~g~~vGiIt~~Dil~ 236 (250)
.....++.++|.+++.++.+++++.++++.|.+.+...+||+++ +|+++|++|.+|++.
T Consensus 54 ----~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 54 ----LYDLVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred ----ccccEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 11135788999999999999999999999999999999999997 789999999999975
No 30
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.65 E-value=3.9e-15 Score=111.13 Aligned_cols=110 Identities=28% Similarity=0.456 Sum_probs=95.8
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++.+++++.++.++ ++.|.+.++..+||+|++|+++|+|+..|++++....
T Consensus 2 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~------------------------ 52 (112)
T cd04624 2 PVVTVDPDTSIREA-----AKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAG------------------------ 52 (112)
T ss_pred CCeEECCCCcHHHH-----HHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhcc------------------------
Confidence 46788999999999 9999998999999999889999999999998653211
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
.....++.++|.++++++.+++++.++++.|.+.+...+||++++|+++|++|++|+++
T Consensus 53 ----~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 53 ----IDLDTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred ----CCCccCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 11234688899889999999999999999999999999999998899999999999975
No 31
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.64 E-value=3.6e-15 Score=111.69 Aligned_cols=109 Identities=23% Similarity=0.396 Sum_probs=94.8
Q ss_pred eeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHH
Q 025613 95 LHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQK 174 (250)
Q Consensus 95 ~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (250)
..++++++++.++ ++.|.+.++..++|++++|+++|+|+..|+.+++...
T Consensus 4 ~~~v~~~~~~~~~-----~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~------------------------- 53 (113)
T cd04607 4 QLLVSPDASILDA-----LRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKG------------------------- 53 (113)
T ss_pred ceEECCCCCHHHH-----HHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcC-------------------------
Confidence 5678999999999 9999988889999999889999999999998643210
Q ss_pred HHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 175 LLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 175 ~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
.....++.++|.+.+.++++++++.++++.|.+.+.+++||++++|+++|+||++||+.
T Consensus 54 ---~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 54 ---LSLDDPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred ---CCcCCCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 11235688999988999999999999999999999999999998899999999999874
No 32
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.64 E-value=2.7e-15 Score=113.66 Aligned_cols=120 Identities=35% Similarity=0.521 Sum_probs=98.0
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++.++.+++++.++ .+.|.+.++..+||++++|+++|+++..|+++.+..... .... ..+
T Consensus 2 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~-~~~~-------~~~------- 61 (122)
T cd04803 2 PVVTLSEDDSLADA-----EELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLS-DNGE-------ESL------- 61 (122)
T ss_pred CCEEeCCCCcHHHH-----HHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccc-cccc-------ccc-------
Confidence 56789999999999 999999999999999988999999999999875431110 0000 000
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
......++.++|..+++++.+++++.++++.|.+.+.+.+||++++|+++|+||+.|+++
T Consensus 62 ---~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 62 ---TKERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred ---ccccCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 012356788999999999999999999999999999999999997789999999999985
No 33
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.64 E-value=1.9e-15 Score=113.40 Aligned_cols=109 Identities=29% Similarity=0.423 Sum_probs=92.2
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcC-CCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEV 172 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~-~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (250)
++.++++++++.++ ++.|.+++ ...+||+|++|+++|+|+..||.+...
T Consensus 2 ~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~------------------------- 51 (114)
T cd04801 2 DFPTVPAHLTLREF-----VREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPT------------------------- 51 (114)
T ss_pred CcceeCCCCCHHHH-----HHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHH-------------------------
Confidence 57889999999999 99887664 789999998899999999999986521
Q ss_pred HHHHhccCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 173 QKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 173 ~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
......++.++|.+ .++++.+++++.+|++.|.+.+.+++||+|++|+++|+||.+||++
T Consensus 52 ----~~~~~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 52 ----SQWAQTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred ----hhccccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 01123567888864 3678999999999999999999999999997789999999999875
No 34
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.64 E-value=3.9e-15 Score=139.27 Aligned_cols=188 Identities=29% Similarity=0.370 Sum_probs=134.4
Q ss_pred CeeeeccccccccccCCCCCCCCCCcccccccceecC---CCChhHHHHHhhhcCC-eeeeeCCCcccccccccccCCCC
Q 025613 2 DSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLL---SRPGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAA 77 (250)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
|-+++|.-+.+.--.... .+.-..++.+.+|++.. .-+..+....+.+... -+....-++-...+
T Consensus 13 dv~l~p~~~~~~~~~~~~--~t~l~~~~~~~~Piv~a~m~~vT~~ela~ava~~GglG~i~~~~~~e~~~~--------- 81 (486)
T PRK05567 13 DVLLVPAHSEVLPNDVDL--STQLTKNIRLNIPLLSAAMDTVTEARMAIAMAREGGIGVIHKNMSIEEQAE--------- 81 (486)
T ss_pred ceEecccccCcCcccccc--cchhhhhcCcCcCEEeCCCCCcCHHHHHHHHHhCCCCCEecCCCCHHHHHH---------
Confidence 455666655443211122 11222356677887775 3344455555655544 22221111111111
Q ss_pred CCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCC
Q 025613 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 157 (250)
Q Consensus 78 ~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~ 157 (250)
.......++++|.. ++.++++++++.++ ++.|.++++..+||+|++|+++|+|+.+||...
T Consensus 82 ~I~~vk~~~dim~~--~~v~i~~~~tv~ea-----~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~------------ 142 (486)
T PRK05567 82 EVRKVKRSESGVVT--DPVTVTPDTTLAEA-----LALMARYGISGVPVVDENGKLVGIITNRDVRFE------------ 142 (486)
T ss_pred HHHHhhhhhhcccC--CCeEeCCCCCHHHH-----HHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhc------------
Confidence 11122357788888 89999999999999 999999999999999999999999999999742
Q ss_pred CCCCcccchhchHHHHHHHhccCCCccccccc-CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 158 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMT-PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
.....++.++|. ++++++.+++++.++++.|.+.+.+.+||+|++|+++|+||++||++
T Consensus 143 --------------------~~~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~ 202 (486)
T PRK05567 143 --------------------TDLSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEK 202 (486)
T ss_pred --------------------ccCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhh
Confidence 112457889998 78899999999999999999999999999999999999999999998
Q ss_pred HHH
Q 025613 237 AAL 239 (250)
Q Consensus 237 ~l~ 239 (250)
.+.
T Consensus 203 ~~~ 205 (486)
T PRK05567 203 AEE 205 (486)
T ss_pred hhh
Confidence 864
No 35
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.64 E-value=3.6e-15 Score=111.26 Aligned_cols=109 Identities=26% Similarity=0.422 Sum_probs=94.6
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++..+++++++.++ ++.|.++++.++||+|++|+++|+++..|+..+....
T Consensus 2 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~------------------------ 52 (111)
T cd04626 2 DFPTIDEDASIREA-----LHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFE------------------------ 52 (111)
T ss_pred CceEECCCccHHHH-----HHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhc------------------------
Confidence 57789999999999 9999999999999999889999999999998642100
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
.....++.++|.++++++.+++++.++++.|.+.+...+||+++ |+++|+||+.|+++
T Consensus 53 ----~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 53 ----SFLEKKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred ----ccccCcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 01134688889988999999999999999999999999999996 99999999999874
No 36
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.64 E-value=4.5e-15 Score=138.66 Aligned_cols=188 Identities=24% Similarity=0.309 Sum_probs=135.1
Q ss_pred CeeeeccccccccccCCCCCCCCCCcccccccceecCC---CChhHHHHHhhhcCC-eeeeeCCCcccccccccccCCCC
Q 025613 2 DSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLS---RPGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAA 77 (250)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
|-+++|.-+.+..-... ..+.-..++.+.+|++... -+-.+....|.+... -+....-++-...+.
T Consensus 22 dv~l~p~~~~~~~~~v~--~~t~l~~~~~l~~Pii~a~M~~vt~~~ma~a~a~~GglGvi~~~~~~e~~~~~-------- 91 (495)
T PTZ00314 22 DVILLPGYIDFSRDDVD--LSTRLTRNIRLKIPIVSSPMDTVTEHKMAIAMALMGGIGVIHNNCSIEEQVEE-------- 91 (495)
T ss_pred ceEeccccccccccccc--ccccccCCcccCCceeecCccccccHHHHHHHHHCCCeEEecCCCCHHHHHHH--------
Confidence 55677776665332222 2222233677788877662 223445555666655 333222122111111
Q ss_pred CCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC---CcEEEEEehHHHHhhhhccCCCCC
Q 025613 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRA 154 (250)
Q Consensus 78 ~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~---g~~~GiVt~~dL~~~~~~~~~~~~ 154 (250)
.-...+.++.|.. +++++++++++.++ ++.|.++++..+||+|++ |+++|+|+.+|+...
T Consensus 92 -v~kvk~~e~g~i~--dpvtv~pd~tv~eA-----~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~--------- 154 (495)
T PTZ00314 92 -VRKVKRFENGFIM--DPYVLSPNHTVADV-----LEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFV--------- 154 (495)
T ss_pred -Hhhcccccccccc--CCeecCCCCCHHHH-----HHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhc---------
Confidence 1122245567777 78999999999999 999999999999999973 899999999999742
Q ss_pred CCCCCCCcccchhchHHHHHHHhccCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehH
Q 025613 155 DNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRG 232 (250)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~ 232 (250)
.....++.++|++ +++++++++++.+|+++|.+++.+.+||+|++++++|+||++
T Consensus 155 -----------------------~~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~ 211 (495)
T PTZ00314 155 -----------------------KDKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRS 211 (495)
T ss_pred -----------------------ccCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEeh
Confidence 1235679999987 889999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 025613 233 NVVRAAL 239 (250)
Q Consensus 233 Dil~~l~ 239 (250)
||++...
T Consensus 212 DIl~~~~ 218 (495)
T PTZ00314 212 DLKKNRG 218 (495)
T ss_pred Hhhhccc
Confidence 9998754
No 37
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.64 E-value=2.8e-15 Score=115.68 Aligned_cols=131 Identities=37% Similarity=0.596 Sum_probs=99.8
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++.++++++++.++ ++.|.+.++.++||+|++|+++|+|+..||.++....... .....+..+ .+.+ .
T Consensus 2 ~~~~v~~~~~l~~~-----~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~-~~~~~~~~~-----~~~~-~ 69 (132)
T cd04636 2 DVITVKKDDTLRDV-----VEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGL-FYVTLLYSV-----IFLD-E 69 (132)
T ss_pred CCeEeCCCCcHHHH-----HHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCc-ccccccccc-----cccc-h
Confidence 56789999999999 9999988899999999889999999999998764321100 000000000 0000 1
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~ 237 (250)
..+......++.++|.++++.+.+++++.+++++|.+.+.+.+||+++ |+++|+||++|++++
T Consensus 70 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~~ 132 (132)
T cd04636 70 SKIKKLLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIRS 132 (132)
T ss_pred HHHHHHcCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhcC
Confidence 122233345788999999999999999999999999999999999997 999999999999863
No 38
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.63 E-value=4e-15 Score=109.08 Aligned_cols=94 Identities=23% Similarity=0.499 Sum_probs=86.2
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
+++.+++++++.++ ++.|.++++..+||+|++|+++|+|+..|+.+.
T Consensus 2 ~~~~v~~~~~i~~a-----~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~---------------------------- 48 (96)
T cd04614 2 NVPTVWEETPLPVA-----VRIMELANVKALPVLDDDGKLSGIITERDLIAK---------------------------- 48 (96)
T ss_pred CccEeCCCCcHHHH-----HHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC----------------------------
Confidence 57889999999999 999999999999999988999999999999852
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
. .+.++.+++++.++++.|.+++.+++||++++|+++|+||++|+++
T Consensus 49 ----~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 49 ----S------------EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred ----C------------CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 0 1789999999999999999999999999997799999999999985
No 39
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.63 E-value=4.5e-15 Score=110.89 Aligned_cols=111 Identities=31% Similarity=0.415 Sum_probs=96.2
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
+++++++++++.++ ++.+.+.++..+||+|++|+++|+|+..++.+.+....
T Consensus 3 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~----------------------- 54 (114)
T cd04604 3 ALPLVSPDTSLKDA-----LLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGL----------------------- 54 (114)
T ss_pred cccccCCCCcHHHH-----HHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccC-----------------------
Confidence 57788999999999 99998888889999998899999999999987532111
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
.....++.++|.+++.++.+++++.++++.|.+.+...+||++++|+++|+||..||++
T Consensus 55 ----~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 55 ----DILTLPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred ----ccccCCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 11234688999988999999999999999999999999999998899999999999975
No 40
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.63 E-value=5.1e-15 Score=113.30 Aligned_cols=124 Identities=23% Similarity=0.352 Sum_probs=93.7
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++.++++++++.++ ++.|.++++..+||+|++|+++|+|+..|+++...... ......... +.
T Consensus 2 ~~~~v~~~~~~~~a-----~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~-~~~~~~~~~--------~~--- 64 (126)
T cd04642 2 KVVSIDSDERVLDA-----FKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPD-DLLLYRTIT--------FK--- 64 (126)
T ss_pred CeEEECCCccHHHH-----HHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcc-hhhcccchh--------hh---
Confidence 57889999999999 99999999999999998899999999999987532110 000000000 00
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
... ..-....+.|..++.++++++++.+|++.|.+.+.+++||+|++|+++|+||..||++
T Consensus 65 ~~~--~~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 65 ELS--EKFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred hhh--hhcccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 000 0011233567778999999999999999999999999999998899999999999975
No 41
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.63 E-value=5.4e-15 Score=112.59 Aligned_cols=119 Identities=20% Similarity=0.210 Sum_probs=92.8
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEV 172 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (250)
++.++++++++.++ ++.|.++++..+||+|++ |+++|+|+..|+.+++....... +.|+.
T Consensus 2 ~~~~v~~~~~i~~a-----~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~----------~~~~~---- 62 (123)
T cd04627 2 PFIPVPSTASLFQA-----IEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSF----------PGLDP---- 62 (123)
T ss_pred CceecCCCCCHHHH-----HHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhc----------cchhh----
Confidence 57788999999999 999998889999999987 99999999999987532111000 00000
Q ss_pred HHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHH
Q 025613 173 QKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 235 (250)
Q Consensus 173 ~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil 235 (250)
. ........++|..++.++++++++.+|++.|.+++.+++||+|++|+++|+||..|+-
T Consensus 63 ~----~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 63 L----YPIPLRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred h----hhhhhhhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 0 0001223457888889999999999999999999999999999889999999999984
No 42
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.63 E-value=4.8e-15 Score=111.38 Aligned_cols=106 Identities=36% Similarity=0.601 Sum_probs=92.7
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeC---CCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFN 170 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~---~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (250)
++.++.+++++.++ ++.|.+++...+||+|+ +|+++|+|+..|++..
T Consensus 3 ~~~~i~~~~~~~~~-----~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~------------------------- 52 (114)
T cd04602 3 DPSVLSPDHTVADV-----LEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFL------------------------- 52 (114)
T ss_pred CCeEcCCCCCHHHH-----HHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhh-------------------------
Confidence 46788999999999 99999888889999997 7899999999999743
Q ss_pred HHHHHHhccCCCcccccccCCCeEecC--CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 171 EVQKLLSKTNGKMVGDLMTPAPVVVRE--TTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 171 ~~~~~~~~~~~~~v~~im~~~~~~v~~--~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
.....++.++|.+.+.++.. ++++.++++.|.+++...+||++++|+++|+||++|+++
T Consensus 53 -------~~~~~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 53 -------TDSETPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred -------hccCCCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 11234588999888888877 999999999999999999999998899999999999875
No 43
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.63 E-value=3.5e-15 Score=113.55 Aligned_cols=123 Identities=33% Similarity=0.510 Sum_probs=97.3
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEV 172 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (250)
++..+.++.++.++ ++.|.+.++..+||+|++ |+++|+|+..|+.+++..... |.....
T Consensus 2 ~~~~v~~~~~~~~~-----~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~--------------~~~~~~- 61 (125)
T cd04631 2 DVVTVPPTTPIMEA-----AKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEK--------------FNKIKT- 61 (125)
T ss_pred CceEeCCCCcHHHH-----HHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccch--------------hccccc-
Confidence 56788999999999 999999999999999987 999999999999875421100 000000
Q ss_pred HHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613 173 QKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237 (250)
Q Consensus 173 ~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~ 237 (250)
.........++.++|.++++++++++++.++++.|.+.+.+.+||++++|+++|+||+.||+++
T Consensus 62 -~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~~ 125 (125)
T cd04631 62 -GNGLEAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLKA 125 (125)
T ss_pred -cccchhhhcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhcC
Confidence 0000112356888898889999999999999999999999999999977999999999999863
No 44
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.62 E-value=4.2e-15 Score=110.33 Aligned_cols=106 Identities=44% Similarity=0.652 Sum_probs=92.9
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++..++.++++.++ .+.|.++++..+||+|++|+++|+++.+++...
T Consensus 3 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~---------------------------- 49 (110)
T cd04601 3 DPITVSPDATVAEA-----LELMAEYGISGLPVVDDDGKLVGIVTNRDLRFE---------------------------- 49 (110)
T ss_pred CCeEeCCCCcHHHH-----HHHHHHcCCceEEEEcCCCEEEEEEEhhHeeec----------------------------
Confidence 57788999999999 999998999999999988999999999998742
Q ss_pred HHHhccCCCcccccccCCCeEecC-CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRE-TTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~-~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
.....++.++|...+.++.+ ++++.++++.|.+.+.+.+||++++|+++|+||++|+++
T Consensus 50 ----~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 50 ----TDLDKPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred ----ccCCCCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 11235688899877777777 999999999999999999999998899999999999975
No 45
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.62 E-value=3.8e-15 Score=111.41 Aligned_cols=112 Identities=38% Similarity=0.540 Sum_probs=95.4
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++.++++++++.++ ++.|.++++..+||++++|+++|+|+..|+++.+....
T Consensus 2 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~----------------------- 53 (114)
T cd04629 2 NPVTFTPDMSVTEA-----VEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESS----------------------- 53 (114)
T ss_pred CCeEeCCCCCHHHH-----HHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhh-----------------------
Confidence 46788999999999 99999888889999998899999999999986432100
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
.......++.++|.++++++.+++++.++++.|.+.+...+||+|+ |+++|+||.+||++
T Consensus 54 --~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 54 --YHCDGVATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred --hccCCCccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 0011345788999888999999999999999999999999999996 99999999999986
No 46
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.62 E-value=5.7e-15 Score=115.01 Aligned_cols=132 Identities=26% Similarity=0.390 Sum_probs=98.5
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhc-hHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT-FNEV 172 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 172 (250)
++.++++++++.++ ++.|.++++..+||+|++|+++|+|+..|+++....... . ......+.|.+ +...
T Consensus 2 ~~~~v~~~~~~~~a-----~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~-~----~~~~~~~~~~~~~~~~ 71 (135)
T cd04621 2 DIATVHPEHSLLHV-----VDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNE-R----GLPKKSIKMKRKAGQK 71 (135)
T ss_pred CceEeCCCCcHHHH-----HHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccc-c----ccchhhhhhhhhcccc
Confidence 56789999999999 999999999999999998999999999999976421100 0 00000111110 0000
Q ss_pred HHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 173 QKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 173 ~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
..........++.++|.++++++.+++++.++++.|.+.+.+.+||+++ |+++|+||+.|+++
T Consensus 72 ~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 72 RYRYVKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred cccccccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 0011112345789999988999999999999999999999999999995 99999999999986
No 47
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.62 E-value=9e-15 Score=108.79 Aligned_cols=108 Identities=36% Similarity=0.500 Sum_probs=94.4
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++.++.+++++.++ ++.|.++++.++||+++ |+++|+++..|++++...
T Consensus 2 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~------------------------- 50 (110)
T cd04588 2 PLITLNPNATLREA-----ARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIAR------------------------- 50 (110)
T ss_pred CcEEECCCCCHHHH-----HHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhc-------------------------
Confidence 57789999999999 99999999999999998 999999999999875221
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
.....++.++|..+++++++++++.++++.|.+.+.+++||++++|+++|+||..|+++
T Consensus 51 ----~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 51 ----GLELAKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred ----cccccCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 01125678888888999999999999999999999999999998799999999999974
No 48
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.62 E-value=4.2e-15 Score=112.65 Aligned_cols=120 Identities=28% Similarity=0.493 Sum_probs=97.0
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++.++.+++++.++ ++.|.+.++..+||+|++|+++|+++..||++....... .. . .
T Consensus 2 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~--------~~--~--------~ 58 (122)
T cd04635 2 EPVTCTPDDPVSKV-----WDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTS--------VE--D--------Q 58 (122)
T ss_pred CCEEeCCCCcHHHH-----HHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhcccccc--------cc--c--------h
Confidence 57889999999999 999998899999999988999999999999864211100 00 0 0
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
.........++.++|..+++++.+++++.++++.|.+.+.+.+||++++|+++|++|+.|+++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 59 QRTQTKASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred hhhhhhccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 000012345688899888999999999999999999999999999998899999999999986
No 49
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.62 E-value=6.2e-15 Score=110.06 Aligned_cols=111 Identities=34% Similarity=0.551 Sum_probs=94.1
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++.++.+++++.++ ++.|.+++...+||+++ |+++|+|+..|++......+.
T Consensus 2 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~---------------------- 53 (113)
T cd04587 2 KPATVSPTTTVQEA-----AKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGL---------------------- 53 (113)
T ss_pred CCeEeCCCCCHHHH-----HHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCC----------------------
Confidence 56788999999999 99999888889999997 999999999999743211110
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
.....++.++|.+++.++.+++++.++++.|.+.+..++||++++|+++|+||..|++.
T Consensus 54 ----~~~~~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 54 ----DPESTLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred ----CcCcCCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 11125788899988999999999999999999999999999998899999999999975
No 50
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.62 E-value=8.6e-15 Score=109.87 Aligned_cols=110 Identities=25% Similarity=0.489 Sum_probs=91.4
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcC-CCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEV 172 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~-~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (250)
++.++.++.++.++ ++.|.+++ ...++|++ +|+++|+|+..|++++.....
T Consensus 2 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~---------------------- 53 (115)
T cd04620 2 HPLTVTPDTPVADA-----IALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGK---------------------- 53 (115)
T ss_pred CCeEeCCCCcHHHH-----HHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCC----------------------
Confidence 46788999999999 99998877 66777777 589999999999987532100
Q ss_pred HHHHhccCCCcccccccCCCeEecCC--CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 173 QKLLSKTNGKMVGDLMTPAPVVVRET--TNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 173 ~~~~~~~~~~~v~~im~~~~~~v~~~--~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
.....++.++|.++++++.++ +++.+|++.|.+++...+||+|++|+++|+||++|+++
T Consensus 54 -----~~~~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 54 -----DLSDLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred -----CccccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 112356888998888899887 78999999999999999999998899999999999986
No 51
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.62 E-value=8.7e-15 Score=109.03 Aligned_cols=109 Identities=34% Similarity=0.554 Sum_probs=93.9
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++.+++++.++.++ .+.|.++++..+||+|+ |+++|+|+..|+.+.+...+
T Consensus 2 ~~~~v~~~~~~~~~-----~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~----------------------- 52 (111)
T cd04800 2 PPVTCSPDTTIREA-----ARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEG----------------------- 52 (111)
T ss_pred CCEEECCCCcHHHH-----HHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccC-----------------------
Confidence 57789999999999 99999888999999997 99999999999986422111
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
.....++.++|..+++++++++++.++++.|.+.+..++||+++ |+++|+||++|+++
T Consensus 53 ----~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 53 ----LDPDTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred ----CCccCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 11235688899889999999999999999999999999999996 99999999999975
No 52
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.62 E-value=5.5e-15 Score=137.09 Aligned_cols=125 Identities=26% Similarity=0.383 Sum_probs=109.7
Q ss_pred CCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHH-----cCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCC
Q 025613 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVE-----KRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGR 153 (250)
Q Consensus 79 ~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~-----~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~ 153 (250)
.....+++++|++ ++.++++++++.++ ++.+++ .+...++|+|++|+++|+|+.+|++..
T Consensus 127 ~~~e~tvg~iMt~--~~~~v~~~~tv~ea-----l~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a-------- 191 (449)
T TIGR00400 127 SYSDDSAGRIMTI--EYVELKEDYTVGKA-----LDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILA-------- 191 (449)
T ss_pred CCCcchHHHhCcC--ceEEECCCCcHHHH-----HHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcC--------
Confidence 4456689999998 99999999999999 999975 344678889988999999999999742
Q ss_pred CCCCCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHH
Q 025613 154 ADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGN 233 (250)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~D 233 (250)
....+++++|.++++++++++++.+|++.|.+++...+||||++|+++|+||.+|
T Consensus 192 -------------------------~~~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~D 246 (449)
T TIGR00400 192 -------------------------KPEEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDD 246 (449)
T ss_pred -------------------------CCCCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHH
Confidence 1245799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhh
Q 025613 234 VVRAALQIKH 243 (250)
Q Consensus 234 il~~l~~~~~ 243 (250)
+++.+.+...
T Consensus 247 il~~l~~~~~ 256 (449)
T TIGR00400 247 IIDVIQSEAT 256 (449)
T ss_pred HHHHHHhhhH
Confidence 9999877554
No 53
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.62 E-value=9.8e-15 Score=108.68 Aligned_cols=107 Identities=34% Similarity=0.544 Sum_probs=94.6
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++.+++.+.++.++ .+.|.++++..+||+|+ |+++|+|+..|+.+....
T Consensus 3 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~------------------------- 51 (110)
T cd04595 3 PVKTVRPEATIEEA-----RELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRH------------------------- 51 (110)
T ss_pred CceEeCCCCcHHHH-----HHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhc-------------------------
Confidence 57889999999999 99999889999999998 999999999999864210
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
.....++.++|.++++++.+++++.+++++|.+.+.+++||++ +|+++|+||+.|+++
T Consensus 52 ----~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 52 ----GLGHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred ----ccccCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 1134678889999999999999999999999999999999999 899999999999975
No 54
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.62 E-value=4.1e-15 Score=115.21 Aligned_cols=128 Identities=36% Similarity=0.646 Sum_probs=98.7
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++.++.+++++.++ ++.|.++++.++||+|++|+++|+|+..|+.+....... .....|.......
T Consensus 3 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~---------~~~~~~~~~~~~~ 68 (135)
T cd04586 3 DVVTVSPETSVAEA-----ARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTE---------RRRARWLDLLAGA 68 (135)
T ss_pred CCEEeCCCCCHHHH-----HHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCc---------chhhhHHHHhcch
Confidence 67889999999999 999999999999999988999999999999865321100 0001121110000
Q ss_pred H----HHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 K----LLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~----~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
. ........++.++|.++++++.+++++.++++.|.+.+.+++||+| +|+++|+||+.|+++
T Consensus 69 ~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 69 EELAAAFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred HHHHHHHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 0 0011234578999998999999999999999999999999999999 899999999999986
No 55
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.61 E-value=9.4e-15 Score=108.96 Aligned_cols=110 Identities=22% Similarity=0.328 Sum_probs=94.3
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
+++.++++.++.++ ++.|.+++...++|+|+ |++.|+++..|+++......
T Consensus 2 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~----------------------- 52 (111)
T cd04589 2 PPLIVDASTSIRDA-----ARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDG----------------------- 52 (111)
T ss_pred CCEEECCCCcHHHH-----HHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCC-----------------------
Confidence 46788999999999 99999888899999998 89999999999987532100
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~ 237 (250)
.....++.++|.+++.++++++++.++++.|.+.+...+||++ +|+++|+||..|++++
T Consensus 53 ----~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~G~it~~dl~~~ 111 (111)
T cd04589 53 ----LPSSTPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVRE-GGEVVGVLEQTDLLSF 111 (111)
T ss_pred ----CCCCCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEee-CCEEEEEEEhHHhhcC
Confidence 1234578889998899999999999999999999999999998 5899999999999863
No 56
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.61 E-value=1e-14 Score=135.43 Aligned_cols=122 Identities=30% Similarity=0.381 Sum_probs=107.3
Q ss_pred CCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCC
Q 025613 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM 158 (250)
Q Consensus 79 ~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~ 158 (250)
....+++.++|.. +++++.+++++.++ ++.|.++++..+||+|+ ++++|+||.+||...
T Consensus 84 ~v~~VKv~eim~~--~pvtv~p~~tI~eA-----~~lm~~~~~~~~vVvD~-gklvGIVT~rDL~~~------------- 142 (475)
T TIGR01303 84 TVAFVKSRDLVLD--TPITLAPHDTVSDA-----MALIHKRAHGAAVVILE-DRPVGLVTDSDLLGV------------- 142 (475)
T ss_pred HHhhcchhhcccc--CCeEECCCCCHHHH-----HHHHHhcCCeEEEEEEC-CEEEEEEEHHHhhcC-------------
Confidence 3446678888988 88999999999999 99999999988988884 799999999999632
Q ss_pred CCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613 159 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 238 (250)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l 238 (250)
....++.++|+++++++++++++.+|+++|.+++++++||+|++|+++|+||++||++..
T Consensus 143 --------------------~~~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~ 202 (475)
T TIGR01303 143 --------------------DRFTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRAT 202 (475)
T ss_pred --------------------CCCCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHH
Confidence 123579999999999999999999999999999999999999889999999999999876
Q ss_pred Hhh
Q 025613 239 LQI 241 (250)
Q Consensus 239 ~~~ 241 (250)
...
T Consensus 203 ~~~ 205 (475)
T TIGR01303 203 IYT 205 (475)
T ss_pred hCC
Confidence 543
No 57
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.61 E-value=9.6e-15 Score=109.03 Aligned_cols=111 Identities=39% Similarity=0.680 Sum_probs=93.7
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++.++++++++.++ ++.|.++++..+||+++ |+++|+++..|++......+.
T Consensus 2 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~---------------------- 53 (113)
T cd04622 2 DVVTVSPDDTIREA-----ARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGR---------------------- 53 (113)
T ss_pred CCEEECCCCcHHHH-----HHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccC----------------------
Confidence 57789999999999 99999999999999997 999999999998732111110
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
.....++.++|..++.++.+++++.++++.|.+.+...+||++++|+++|+||+.|+++
T Consensus 54 ----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 54 ----DPDTTTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred ----CcccCCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 11123488899989999999999999999999999999999997799999999999975
No 58
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.61 E-value=5.2e-15 Score=110.24 Aligned_cols=102 Identities=38% Similarity=0.509 Sum_probs=89.5
Q ss_pred eCCCCchhcccchhHHHHHHHcC-----CCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHH
Q 025613 98 VKPTTTVDEAFVPTALEILVEKR-----ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEV 172 (250)
Q Consensus 98 v~~~~~v~~a~~~~~~~~~~~~~-----~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (250)
+.+++++.++ ++.|.+++ +..+||+|++|+++|+|+.+++.+.
T Consensus 2 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~--------------------------- 49 (109)
T cd04606 2 VREDWTVGEA-----LEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA--------------------------- 49 (109)
T ss_pred ccccCcHHHH-----HHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC---------------------------
Confidence 5678899999 99998776 4689999988999999999999852
Q ss_pred HHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613 173 QKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237 (250)
Q Consensus 173 ~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~ 237 (250)
....++.++|.++++++.+++++.++++.|.+.+...+||++++|+++|+||+.|+++.
T Consensus 50 ------~~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 50 ------DPDTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred ------CCcchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 12356888898889999999999999999999999999999988999999999999975
No 59
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.61 E-value=1.3e-14 Score=107.80 Aligned_cols=109 Identities=31% Similarity=0.514 Sum_probs=94.9
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++.++++++++.++ ++.|.++++..+||+++ |+++|+++..||.++....
T Consensus 2 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~------------------------ 51 (111)
T cd04611 2 QILTCPPDTSLAEA-----ASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASG------------------------ 51 (111)
T ss_pred CceEECCCCcHHHH-----HHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcC------------------------
Confidence 46789999999999 99999888889999987 8999999999998753210
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
.....++.++|.++++++.+++++.++++.|.+.+.+.+||+|++|+++|+||++|+++
T Consensus 52 ----~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 52 ----PDLQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred ----CCCCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 01346788899888999999999999999999999999999998899999999999975
No 60
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.61 E-value=5.2e-15 Score=138.15 Aligned_cols=119 Identities=25% Similarity=0.368 Sum_probs=101.9
Q ss_pred eeccccccC-CceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeC---CCcEEEEEehHHHHhhhhccCCCCCCCCCC
Q 025613 84 TVGDFMTTK-EELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMF 159 (250)
Q Consensus 84 ~v~~~m~~~-~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~---~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~ 159 (250)
.++++|... .+.+++++++++.++ ++.|.++++..+||+|+ +|+++|+||..||+...
T Consensus 95 kVk~~~~g~i~~~~tV~pd~tl~eA-----l~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~------------- 156 (502)
T PRK07107 95 RVKNYKAGFVVSDSNLTPDNTLADV-----LDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR------------- 156 (502)
T ss_pred HHHHHhcCCcCCCCEeCCCCcHHHH-----HHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc-------------
Confidence 466666521 145789999999999 99999999999999996 58999999999997420
Q ss_pred CCcccchhchHHHHHHHhccCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613 160 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237 (250)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~ 237 (250)
.....++.++|++ +++++++++++.+|+++|.++++..+||+|++|+++|+||++|+++.
T Consensus 157 ------------------~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 157 ------------------MSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH 218 (502)
T ss_pred ------------------cCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence 1235679999986 77889999999999999999999999999988999999999999986
Q ss_pred H
Q 025613 238 A 238 (250)
Q Consensus 238 l 238 (250)
.
T Consensus 219 ~ 219 (502)
T PRK07107 219 K 219 (502)
T ss_pred c
Confidence 4
No 61
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.61 E-value=4.8e-15 Score=113.55 Aligned_cols=114 Identities=26% Similarity=0.453 Sum_probs=91.5
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++.++.+++++.++ ++.|.+++...+||+|++|+++|+|+..|+.+.... .
T Consensus 2 ~~~~v~~~~~i~~a-----~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~------------------------~ 52 (126)
T cd04640 2 KPIVIPADTSIDEA-----LELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPI------------------------K 52 (126)
T ss_pred CCeEECCCCcHHHH-----HHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhh------------------------H
Confidence 46788999999999 999998898999999988999999999999852100 0
Q ss_pred HHHh---ccCCCcccccccCCCeEe------cCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHHHH
Q 025613 174 KLLS---KTNGKMVGDLMTPAPVVV------RETTNLEDAARLLLETKYRRLPVVDAD-GKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~---~~~~~~v~~im~~~~~~v------~~~~~l~~a~~~m~~~~~~~lpVVd~~-g~~vGiIt~~Dil~ 236 (250)
.... .....++.++|.+++.++ .+++++.++++.|.+.+.+++||+|++ |+++|+||+.||++
T Consensus 53 ~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 53 RIQEGGISRSELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred HHHHcCCCchheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 0000 112456889998765443 368999999999999999999999976 79999999999985
No 62
>PRK11573 hypothetical protein; Provisional
Probab=99.61 E-value=6.7e-15 Score=134.95 Aligned_cols=189 Identities=13% Similarity=0.060 Sum_probs=135.8
Q ss_pred ccccccCCCCCCCCCCcccccccceecCC------CChhHHHHHhhhcCCeeeeeCCCcccccccccccCCCCCCCCCce
Q 025613 11 SVARLRAPPAGRTSGRTSFALQLPCLLLS------RPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYT 84 (250)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (250)
.+..+.+|+.|..++.+++..++...... .+..++...++.... ....+...+.. ..-.++..+
T Consensus 119 ~~~~l~~P~v~~l~~~~~~l~~l~g~~~~~~~~~~~s~eEl~~lv~~~~~---------~l~~~e~~mi~-~vl~l~~~~ 188 (413)
T PRK11573 119 PLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKEELRTIVHESRS---------QISRRNQDMLL-SVLDLEKVT 188 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCHHHHHHHHHHHhh---------hcCHHHHHHHH-HHhccCCCC
Confidence 45567777788777777776654443322 112233332322111 11111111111 245778889
Q ss_pred eccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCCCCCCCCcc
Q 025613 85 VGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 163 (250)
Q Consensus 85 v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~ 163 (250)
++++|+|+.++..++.++++.++ ++.+.+++++++||++++ ++++|+|+.+|++.......
T Consensus 189 v~eiMtPr~~i~~l~~~~~~~e~-----~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~------------- 250 (413)
T PRK11573 189 VDDIMVPRNEIVGIDINDDWKSI-----LRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK------------- 250 (413)
T ss_pred hhhcCCccceEEEEECCCCHHHH-----HHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccC-------------
Confidence 99999999999999999999999 999999999999999865 78999999999986421000
Q ss_pred cchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhhh
Q 025613 164 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 242 (250)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~~ 242 (250)
......+.+++. ++.+|++++++.++++.|++.+.+.+.|+||.|...|+||.+||++.+....
T Consensus 251 --------------~~~~~~l~~~~r-~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei 314 (413)
T PRK11573 251 --------------EFTKENMLRAAD-EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDF 314 (413)
T ss_pred --------------cCCHHHHHhhcc-CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCC
Confidence 001122445554 5889999999999999999999999999999999999999999999988544
No 63
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.61 E-value=8.3e-15 Score=112.25 Aligned_cols=124 Identities=26% Similarity=0.373 Sum_probs=95.9
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++..+.+++++.++ ++.|.+.+.+++||+|++|+++|+|+..|+.+++...... + .+....
T Consensus 2 ~~~~i~~~~~~~~~-----~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~-------------~-~~~~~~ 62 (128)
T cd04632 2 DVITVREDDSVGKA-----INVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDK-------------A-RTGDRS 62 (128)
T ss_pred CceEeCCCCCHHHH-----HHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhh-------------c-chhhhh
Confidence 56788999999999 9999999999999999889999999999998653211000 0 000000
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEc--CCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD--ADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd--~~g~~vGiIt~~Dil~ 236 (250)
.........++.++|.++++++.+++++.++++.|.+.+...+||++ ++|+++|+||++|+++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 63 GEKERMLDLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred hhhhhhccCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 00001224568899988899999999999999999999999999985 3689999999999985
No 64
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.61 E-value=2.2e-14 Score=134.20 Aligned_cols=113 Identities=26% Similarity=0.389 Sum_probs=101.6
Q ss_pred cccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeC---CCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccc
Q 025613 89 MTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 165 (250)
Q Consensus 89 m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~---~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~ 165 (250)
|.+ +++++.+++++.++ ++.|.++++..+||+|+ +|+++|+|+.+|+...
T Consensus 106 mi~--dpvtV~pd~tV~dA-----~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v-------------------- 158 (505)
T PLN02274 106 FVS--DPVVKSPSSTISSL-----DELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFV-------------------- 158 (505)
T ss_pred ccC--CCeeeCCCCcHHHH-----HHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhc--------------------
Confidence 666 79999999999999 99999999999999997 4899999999999743
Q ss_pred hhchHHHHHHHhccCCCcccccccCC--CeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 166 WKTFNEVQKLLSKTNGKMVGDLMTPA--PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~v~~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
.....++.++|+++ ++++.+++++.+|++.|.+++...+||||++|+++|+||++||++.+..
T Consensus 159 ------------~~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 159 ------------NDRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred ------------cccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 12356799999876 7899999999999999999999999999988999999999999998765
No 65
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.60 E-value=1.3e-14 Score=108.03 Aligned_cols=108 Identities=27% Similarity=0.416 Sum_probs=92.4
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEV 172 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (250)
++.++++++++.++ .+.|.+.++..+||++++ |+++|+++..|+.++....
T Consensus 2 ~~~~i~~~~~i~~a-----~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~----------------------- 53 (111)
T cd04590 2 DIVALDADDTLEEI-----LELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEG----------------------- 53 (111)
T ss_pred ceEEEcCCCCHHHH-----HHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcC-----------------------
Confidence 57889999999999 999999889999999988 9999999999999763210
Q ss_pred HHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 173 QKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 173 ~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
....++.++|. ++.++.+++++.++++.|.+++.+++||++++|+++|+||+.|+++
T Consensus 54 ------~~~~~~~~~~~-~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 54 ------EEDLDLRDLLR-PPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred ------CCcCCHHHHhc-CCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 00134566664 5889999999999999999999999999998899999999999975
No 66
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.60 E-value=1.5e-14 Score=109.05 Aligned_cols=120 Identities=38% Similarity=0.586 Sum_probs=96.4
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++.+++++.++.++ ++.|.+.++..+||+|+ |+++|+++..|+.++......... .|+.
T Consensus 2 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~----------~~~~----- 60 (122)
T cd04585 2 NPITVTPDTSLMEA-----LKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLD----------IWEL----- 60 (122)
T ss_pred CCEEeCCCCcHHHH-----HHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhccccccc----------chhh-----
Confidence 46788999999999 99999999999999997 999999999999976421110000 0000
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
.......++.++|.+++.++.+++++.+++..|.+.+.+.+||++++|+++|+||+.|+++
T Consensus 61 --~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 61 --YYLLSKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred --hhhhcccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 0001235688899999999999999999999999999999999997799999999999986
No 67
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.60 E-value=1.7e-14 Score=106.58 Aligned_cols=104 Identities=38% Similarity=0.640 Sum_probs=92.9
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++++++.+.++.++ ++.|.+.+...+||+|+ |+++|+++..||...
T Consensus 3 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~---------------------------- 48 (107)
T cd04610 3 DVITVSPDNTVKDV-----IKLIKETGHDGFPVVDN-GKVVGIVSARDLLGK---------------------------- 48 (107)
T ss_pred CcEEECCCCcHHHH-----HHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhcc----------------------------
Confidence 57889999999999 99998888889999997 899999999999842
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
....++.++|...+.++.+++++.++++.|.+++...+||++++|+++|+|+..|+++
T Consensus 49 -----~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 49 -----DPDETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred -----CccccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 1134688899888999999999999999999999999999998899999999999985
No 68
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.60 E-value=1.6e-14 Score=106.35 Aligned_cols=103 Identities=36% Similarity=0.594 Sum_probs=91.6
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++..+++++++.++ ++.|.++++..+||+| +|+++|+++..|+.++
T Consensus 2 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~---------------------------- 47 (105)
T cd04599 2 DPITIDPLDSVGRA-----ARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRA---------------------------- 47 (105)
T ss_pred CCEEECCCCcHHHH-----HHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcc----------------------------
Confidence 46778999999999 9999988889999998 5899999999999853
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
....++.++|.+++.++++++++.++++.|.+.+..++||+++ |+++|+||..|++.
T Consensus 48 -----~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~~ 104 (105)
T cd04599 48 -----HPNRLVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIAL 104 (105)
T ss_pred -----cccCCHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence 1134578889889999999999999999999999999999996 99999999999873
No 69
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.60 E-value=1.9e-14 Score=106.90 Aligned_cols=109 Identities=38% Similarity=0.637 Sum_probs=94.2
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++..+++++++.++ ++.|.+.++..+||+|+ |+++|+++..||.+.....
T Consensus 2 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~------------------------ 51 (111)
T cd04612 2 DVVTVPVDLTVDEV-----LALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEG------------------------ 51 (111)
T ss_pred CCEEeCCCCcHHHH-----HHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcC------------------------
Confidence 57889999999999 99999988999999998 9999999999998653210
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
.....++.++|.++++++.+++++.++++.|.+.+.+++||++++|+++|+||..|+++
T Consensus 52 ----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 52 ----REATVLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred ----cccccCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 01113577889899999999999999999999999999999997799999999999975
No 70
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.59 E-value=2.1e-14 Score=107.07 Aligned_cols=110 Identities=28% Similarity=0.520 Sum_probs=91.7
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++.++++++++.++ ++.|.+++...++|.+ +|+++|+|+..|+.+.....+
T Consensus 2 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~----------------------- 52 (112)
T cd04625 2 TIYTVAPETLLSEA-----VATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHG----------------------- 52 (112)
T ss_pred CcEEECCCCcHHHH-----HHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcC-----------------------
Confidence 57789999999999 9999888877777665 589999999999986532110
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
......++.++|...+.++.+++++.++++.|.+.+...+||++ +|+++|+||++|+++
T Consensus 53 ---~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 53 ---AGVLDTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred ---CchhcCCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 01123568899988889999999999999999999999999998 689999999999986
No 71
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.59 E-value=1.7e-14 Score=106.72 Aligned_cols=100 Identities=33% Similarity=0.401 Sum_probs=89.6
Q ss_pred eEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHHH
Q 025613 96 HVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKL 175 (250)
Q Consensus 96 ~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (250)
.++++++++.++ ++.|.+.++..+||+|+ |+++|+|+..|+.+.
T Consensus 4 ~~v~~~~~~~~~-----~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~------------------------------ 47 (104)
T cd04594 4 IKVKDYDKVYEA-----KRIMIENDLLSLPVVDY-NKFLGAVYLKDIENA------------------------------ 47 (104)
T ss_pred eEECCCCCHHHH-----HHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhh------------------------------
Confidence 567899999999 99999999999999998 999999999999853
Q ss_pred HhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 176 LSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 176 ~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
...++.++|.+.++++++++++.++++.|.+++...+||++ +|+++|+||..|+++
T Consensus 48 ----~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 48 ----TYGDVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred ----cccchhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 12346778888899999999999999999999999999998 699999999999875
No 72
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.58 E-value=2e-14 Score=106.58 Aligned_cols=109 Identities=30% Similarity=0.411 Sum_probs=91.1
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++.++++++++.++ ++.|.++++..+||+++ |+++|+++..|+.+......
T Consensus 2 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~----------------------- 52 (110)
T cd04609 2 DVVSVAPDDTVSQA-----IERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGK----------------------- 52 (110)
T ss_pred CcEEECCCCcHHHH-----HHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhccc-----------------------
Confidence 56788999999999 99999999999999997 99999999999997532111
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~ 237 (250)
.....++.++|.++++++++++++.+++++|.+ .. .+||++++|+++|+||++|++++
T Consensus 53 ----~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~~-~~~vv~~~~~~~Gvvt~~di~~~ 110 (110)
T cd04609 53 ----AKFSLPVREVMGEPLPTVDPDAPIEELSELLDR-GN-VAVVVDEGGKFVGIITRADLLKY 110 (110)
T ss_pred ----cccCcCHHHHhcCCCceeCCCCcHHHHHHHHHh-CC-ceeEEecCCeEEEEEeHHHhhcC
Confidence 011356888898889999999999999999988 33 47888888999999999999863
No 73
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.58 E-value=2.1e-14 Score=108.84 Aligned_cols=121 Identities=31% Similarity=0.459 Sum_probs=96.0
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++.++++++++.++ ++.|.++++.++||+|+ |+++|+++..++.+.+..... ..++.. .
T Consensus 2 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~------------~~~~~~---~ 60 (122)
T cd04637 2 RVVTVEMDDRLEEV-----REIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLG------------TAGETE---K 60 (122)
T ss_pred CceEeCCCCCHHHH-----HHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhc------------cccchH---H
Confidence 46789999999999 99999999999999997 899999999999875321000 000000 0
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~ 237 (250)
.. .....++.++|.++++++.+++++.++++.|.+++...+||++++|+++|++|+.|++++
T Consensus 61 ~~--~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~~ 122 (122)
T cd04637 61 DL--ATLNRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLKY 122 (122)
T ss_pred HH--HHHHhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhhC
Confidence 00 011346888899999999999999999999999999999999988999999999999863
No 74
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.56 E-value=3.4e-14 Score=107.41 Aligned_cols=119 Identities=32% Similarity=0.505 Sum_probs=95.6
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++..+.+++++.++ ++.|.+.++..+||+|+ |+++|+++..++.+....... .|.. .
T Consensus 2 ~~~~i~~~~~~~~~-----~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~-------------~~~~----~ 58 (121)
T cd04633 2 PVITVSPDDRVSHA-----RRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRP-------------LVRD----R 58 (121)
T ss_pred CCEEECCCCcHHHH-----HHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhh-------------cccc----h
Confidence 46788999999999 99999989999999997 999999999999875432110 0000 0
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
.........++.++|..++.++.+++++.++++.|.+.+.+.+||+++ |+++|+||..|+++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 59 HQERRIRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred hhhhhhhccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 000011345788899889999999999999999999999999999996 99999999999985
No 75
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.55 E-value=4.5e-14 Score=105.08 Aligned_cols=100 Identities=33% Similarity=0.539 Sum_probs=89.5
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeC---CCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFN 170 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~---~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (250)
+...+.+++++.++ .+.+.+.++..+||+++ +|+++|+|+.+|+.+...
T Consensus 3 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~----------------------- 54 (105)
T cd04591 3 LVVLLPEGMTVEDL-----ESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALK----------------------- 54 (105)
T ss_pred ceEEecccccHHHH-----HHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHH-----------------------
Confidence 57788999999999 99999988889999998 689999999999986411
Q ss_pred HHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613 171 EVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237 (250)
Q Consensus 171 ~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~ 237 (250)
. +|.++++++++++++.++++.|.+.+.+.+||++ +|+++|+||+.|++++
T Consensus 55 -------~--------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~~ 105 (105)
T cd04591 55 -------N--------YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLKA 105 (105)
T ss_pred -------H--------hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhcC
Confidence 0 7888899999999999999999999999999996 7899999999999763
No 76
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.55 E-value=1.5e-14 Score=132.61 Aligned_cols=127 Identities=25% Similarity=0.409 Sum_probs=114.6
Q ss_pred CCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCC
Q 025613 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM 158 (250)
Q Consensus 79 ~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~ 158 (250)
.+-..+++++++. +.++|++..++.+| .+.|.+.+.+.+.++++++...||||++|+.......|
T Consensus 145 e~~~trv~~~~~~--~~~~v~~~~~i~~a-----a~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g-------- 209 (610)
T COG2905 145 EFILTRVGEVKTL--PAVTVSPQASIQDA-----ARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADG-------- 209 (610)
T ss_pred hHHHHHHHHHhcC--CCcccCccCcHHHH-----HHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcC--------
Confidence 3344578899988 89999999999999 99999999999999999999999999999998755444
Q ss_pred CCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613 159 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 238 (250)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l 238 (250)
.....+++++|+.++++|..++.+.+|+-+|.+.+++++||++ +|+++|+||..||++..
T Consensus 210 -------------------~~~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~ 269 (610)
T COG2905 210 -------------------RSKTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLF 269 (610)
T ss_pred -------------------CCcccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhh
Confidence 3457899999999999999999999999999999999999998 79999999999999887
Q ss_pred Hh
Q 025613 239 LQ 240 (250)
Q Consensus 239 ~~ 240 (250)
.+
T Consensus 270 s~ 271 (610)
T COG2905 270 SQ 271 (610)
T ss_pred CC
Confidence 64
No 77
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.55 E-value=3.1e-14 Score=123.31 Aligned_cols=114 Identities=32% Similarity=0.403 Sum_probs=100.8
Q ss_pred CceeccccccCCc-eeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCC
Q 025613 82 VYTVGDFMTTKEE-LHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP 160 (250)
Q Consensus 82 ~~~v~~~m~~~~~-~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~ 160 (250)
.++++++|.+ + ++++++++++.++ ++.|.+.++..+||+|++|+++|+|+..|+.++... +
T Consensus 154 ~~~v~~im~~--~~~~~v~~~~~v~~a-----~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~-~---------- 215 (268)
T TIGR00393 154 LVKVKDLMQT--TDLPLIAPTTSFKDA-----LLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLG-G---------- 215 (268)
T ss_pred hhhHHHHhCC--CCCCcCCCCCcHHHH-----HHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhc-C----------
Confidence 4789999988 6 8999999999999 999998899999999988999999999999875321 0
Q ss_pred CcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEe
Q 025613 161 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIIT 230 (250)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt 230 (250)
.....++.++|.++++++.+++++.+|++.|.+.+...+||+|++|+++|+|+
T Consensus 216 -----------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 216 -----------------GSLKSEVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred -----------------CcccCcHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 12346799999999999999999999999999999999999998899999985
No 78
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.55 E-value=1.2e-13 Score=103.01 Aligned_cols=110 Identities=35% Similarity=0.551 Sum_probs=92.6
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++.++++++++.++ ++.|.+.+...+||++++ +++|+++..|+++.+...+
T Consensus 2 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~-~~~G~v~~~dl~~~~~~~~----------------------- 52 (112)
T cd04802 2 NVITVDPDTTVYEA-----ANIMTENNIGRLIVVDNE-KPVGIITERDLVKKVVSRN----------------------- 52 (112)
T ss_pred CcEEECCCCCHHHH-----HHHHHHCCCCEEEEEECC-EEEEEEEHHHHHHHHhhcc-----------------------
Confidence 46788999999999 999998889999999964 9999999999997532110
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
......++.++|.++++++.+++++.++++.|.+.+...+||++++ +++|+||+.|+++
T Consensus 53 ---~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 53 ---LKPREVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred ---CCcccCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 0112356888998889999999999999999999999999999954 9999999999974
No 79
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.55 E-value=4.5e-14 Score=134.12 Aligned_cols=147 Identities=29% Similarity=0.426 Sum_probs=116.2
Q ss_pred ceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCC-----------
Q 025613 83 YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGS----------- 151 (250)
Q Consensus 83 ~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~----------- 151 (250)
.+++++|.+ ++.++++++++.+| ++.|.++++..+||+|++|+++|+|+..|+.+.......
T Consensus 68 ~~V~dim~~--~~~~v~~~~~l~~a-----~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~ 140 (546)
T PRK14869 68 PQVRDLEID--KPVTVSPDTSLKEA-----WNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDPEILSKSPTSL 140 (546)
T ss_pred CcHHHhcCC--CCcEECCCCcHHHH-----HHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCH
Confidence 589999998 89999999999999 999999999999999998999999999999875332110
Q ss_pred ---------------CCCC---C--------------C------------------------------------------
Q 025613 152 ---------------GRAD---N--------------S------------------------------------------ 157 (250)
Q Consensus 152 ---------------~~~~---~--------------~------------------------------------------ 157 (250)
.... . .
T Consensus 141 ~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~l 220 (546)
T PRK14869 141 ENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLEL 220 (546)
T ss_pred HHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHH
Confidence 0000 0 0
Q ss_pred ----CCCCcccchhchHHHHHHHhccCCCccccccc-CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehH
Q 025613 158 ----MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMT-PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRG 232 (250)
Q Consensus 158 ----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~ 232 (250)
-.+.+.+.|++|...+.+ ....++.++|+ ++++++++++++.++.+.|.+.+.+.+||+|++|+++|+||++
T Consensus 221 a~~~~i~ii~t~~dt~~t~~~l---~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~ 297 (546)
T PRK14869 221 AKENGVTVISTPYDTFTTARLI---NQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRY 297 (546)
T ss_pred HHhCCCeEEEecccHHHHHHHh---hcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHH
Confidence 000112333444444443 34678999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 025613 233 NVVRAAL 239 (250)
Q Consensus 233 Dil~~l~ 239 (250)
|+++...
T Consensus 298 dl~~~~~ 304 (546)
T PRK14869 298 HLLSPVR 304 (546)
T ss_pred Hhhcccc
Confidence 9998654
No 80
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.54 E-value=9.3e-14 Score=128.19 Aligned_cols=193 Identities=22% Similarity=0.177 Sum_probs=136.6
Q ss_pred ccccccCCCCCCCCCCcccccccceecCC--CChhHHHHHhhhcCCeeeeeCCCcccccccccccCCCCCCCCCceeccc
Q 025613 11 SVARLRAPPAGRTSGRTSFALQLPCLLLS--RPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDF 88 (250)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 88 (250)
++.++.+|..|...+++++-+....+... ..........+ .+...........+...+.. ....+...+++++
T Consensus 137 ~~~~l~~P~i~~~~~~a~~il~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~E~~mi~-~v~~l~~~~v~ei 211 (429)
T COG1253 137 FFYRLLYPLIWLLNRIANAILRLFGVEPVEEEALTSTEEELE----LVSESAEEGVLEEEEREMIN-NVLDLDDRTVREI 211 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccCccHHHHH----HHHhHHhcCCcCHHHHHHHH-HHhccCCcEeeeE
Confidence 45566677777778877777776655531 11111000000 00111112222222222221 2457788899999
Q ss_pred cccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEe-CCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchh
Q 025613 89 MTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK 167 (250)
Q Consensus 89 m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd-~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (250)
|+|+.++..++.+.++.++ .+.+.+++++.+||++ +.+.++|+|+.+||+.......
T Consensus 212 MtPR~~i~~l~~~~~~~~~-----~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~----------------- 269 (429)
T COG1253 212 MTPRTDIVALDLTDTVEEL-----IELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQ----------------- 269 (429)
T ss_pred eeecccEEEEcCCCCHHHH-----HHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCc-----------------
Confidence 9999999999999999999 9999999999999999 4478999999999997532111
Q ss_pred chHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhhhh
Q 025613 168 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 243 (250)
Q Consensus 168 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~~~ 243 (250)
........+. +|+.|++++++.++++.|++.+.+.+.|+||.|.+.|+||.+||++.+.....
T Consensus 270 ------------~~~~~~~~~~-~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~ 332 (429)
T COG1253 270 ------------SDLDLRVLVR-PPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIP 332 (429)
T ss_pred ------------cccchhhccc-CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCc
Confidence 0111222233 68999999999999999999999999999999999999999999999987543
No 81
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.54 E-value=1.3e-13 Score=101.58 Aligned_cols=111 Identities=48% Similarity=0.747 Sum_probs=94.0
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++..++.+.++.++ .+.|.+++...+||++++++++|+++..|+.+......
T Consensus 2 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~----------------------- 53 (113)
T cd02205 2 DVVTVSPDDTVAEA-----LRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGG----------------------- 53 (113)
T ss_pred CceEecCCCCHHHH-----HHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhcc-----------------------
Confidence 46788999999999 99999988899999998899999999999987532110
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
......+.++|..++.++.+++++.++++.|.+.+...+||+|++|+++|+|+..|+++
T Consensus 54 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 54 ----LDPLVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred ----CCccccHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 01112266788888999999999999999999999999999998899999999999975
No 82
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.54 E-value=7.2e-14 Score=105.52 Aligned_cols=119 Identities=35% Similarity=0.530 Sum_probs=95.7
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++.++++++++.++ ++.|.+.++..+||+|++|+++|+|+..++.+.......... ..
T Consensus 2 ~~~~~~~~~~l~~a-----~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~-----------------~~ 59 (121)
T cd04584 2 DVVTITPTTTIAEA-----LELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLS-----------------EH 59 (121)
T ss_pred CCEEECCCCCHHHH-----HHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccch-----------------hh
Confidence 46788999999999 999998899999999988999999999999864321100000 00
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
.. ......++.++|.++++++.+++++.++++.|.+.+..++||+++ |+++|++|.+||++
T Consensus 60 ~~-~~~~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 60 EL-YLLLKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred hh-hhhcCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 00 012345688899889999999999999999999999999999985 99999999999985
No 83
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.53 E-value=6.1e-14 Score=130.29 Aligned_cols=124 Identities=25% Similarity=0.335 Sum_probs=103.9
Q ss_pred CCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCC
Q 025613 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 157 (250)
Q Consensus 78 ~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~ 157 (250)
..+..++++++|.+ ++.++.+++++.++ ++.|.++++..+||+|++|+++|+|+..|+++.+....
T Consensus 330 ~~l~~~~v~~im~~--~~~~v~~~~tl~ea-----~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~------- 395 (454)
T TIGR01137 330 DVLKNATVKDLHLP--APVTVHPTETVGDA-----IEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGK------- 395 (454)
T ss_pred HHhccCCHHHhCcC--CCeEECCCCcHHHH-----HHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccC-------
Confidence 44677899999988 89999999999999 99999999999999998899999999999987532110
Q ss_pred CCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613 158 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237 (250)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~ 237 (250)
.....++.++|.++++++++++++.+++++|.+.+. +||+++|+++|+||++||+++
T Consensus 396 --------------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~---~vV~~~g~liGvvt~~dll~~ 452 (454)
T TIGR01137 396 --------------------ANPDDAVSKVMSKKFIQIGEGEKLSDLSKFLEKNSS---AIVTEEGKPIGVVTKIDLLSF 452 (454)
T ss_pred --------------------CCcCCCHHHhcCCCCeEECCcCcHHHHHHHHHHCCe---eEEEECCEEEEEEEHHHHHHh
Confidence 112347889999989999999999999999987542 445447999999999999987
Q ss_pred H
Q 025613 238 A 238 (250)
Q Consensus 238 l 238 (250)
+
T Consensus 453 l 453 (454)
T TIGR01137 453 L 453 (454)
T ss_pred h
Confidence 5
No 84
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.52 E-value=2.3e-13 Score=100.61 Aligned_cols=104 Identities=39% Similarity=0.648 Sum_probs=90.7
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++.++.++.++.++ ++.|.+.++..+||++++|+++|+++..++...
T Consensus 2 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~---------------------------- 48 (106)
T cd04638 2 NVVYVTLPGTRDDV-----LELLKEYKVSGVPVVKKSGELVGIITRKDLLRN---------------------------- 48 (106)
T ss_pred CcEEECCCCCHHHH-----HHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhc----------------------------
Confidence 46778889999999 999998888999999988999999999999742
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
....++.++|..++.++.+++++.++++.|.+.+.+.+||++ +|+++|+||.+|+++
T Consensus 49 -----~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~~~~G~it~~d~~~ 105 (106)
T cd04638 49 -----PEEEQLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD-DGKLVGIVTVADIVR 105 (106)
T ss_pred -----cccchHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHhhc
Confidence 012346777888899999999999999999999999999998 579999999999875
No 85
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.51 E-value=2e-13 Score=102.87 Aligned_cols=113 Identities=29% Similarity=0.449 Sum_probs=91.9
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcC-CCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEV 172 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~-~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (250)
+++++++++++.++ ++.|...+ +..+||+|+ |+++|+|+..|+.++.... |.
T Consensus 2 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~----------------~~----- 54 (119)
T cd04598 2 PAPTVSPDTTVNDV-----LERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTP----------------YG----- 54 (119)
T ss_pred CcCccCCCCcHHHH-----HHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhch----------------hh-----
Confidence 46788999999999 99998876 889999998 9999999999998642210 00
Q ss_pred HHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCC---EEEEEcCCCcEEEEEehHHHHH
Q 025613 173 QKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYR---RLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 173 ~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~---~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
. ......++.++|.++++++.+++++.+++..|.+.+.. ..+|++++|+++|+||..|+++
T Consensus 55 ~---~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 55 R---ALYGKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred H---HHHcCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 0 01134578899999999999999999999999988864 3468887899999999999975
No 86
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.50 E-value=2.5e-13 Score=106.59 Aligned_cols=133 Identities=34% Similarity=0.550 Sum_probs=98.4
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCC--CCCCCCCCCC----c--ccc
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGS--GRADNSMFPE----V--DST 165 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~--~~~~~~~~~~----~--~~~ 165 (250)
+++++++++++.++ ++.|.+.++..+||+|+ |+++|+++..|+.+++..... ....+..... + .-.
T Consensus 2 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (143)
T cd04634 2 NPITCNADDTISDA-----ARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFIN 75 (143)
T ss_pred CcEEecCCCCHHHH-----HHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheee
Confidence 57789999999999 99999999999999997 999999999999876532210 0000000000 0 011
Q ss_pred hhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 166 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
|+ +...........++.++|.++++++.+++++.+++..|.+.+...+||+++ |+++|+||.+|+++
T Consensus 76 ~~---~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 76 WE---ETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred hH---HHHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 21 111111122345788899999999999999999999999999999999996 89999999999975
No 87
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.48 E-value=8.4e-13 Score=98.92 Aligned_cols=108 Identities=44% Similarity=0.662 Sum_probs=94.1
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
.++++.++.++.++ ...|.++++..+||++. ++++|++|.+|+.++....+
T Consensus 8 ~~~~v~~~~~~~~a-----~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~----------------------- 58 (117)
T COG0517 8 DVITVKPDTSVRDA-----LLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGG----------------------- 58 (117)
T ss_pred CCEEECCCCcHHHH-----HHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccC-----------------------
Confidence 78999999999999 99999999999999984 37999999999998643221
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHH-cCCCEEEEEcCCC-cEEEEEehHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLE-TKYRRLPVVDADG-KLVGIITRGNVV 235 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~-~~~~~lpVVd~~g-~~vGiIt~~Dil 235 (250)
....++.++|..+++++.+++++.++.+.|.+ .+++.+||+++++ +++|++|+.|++
T Consensus 59 -----~~~~~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 59 -----KRLLPVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred -----CccccHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 01116899999889999999999999999999 6999999999875 999999999974
No 88
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.44 E-value=5.7e-13 Score=122.36 Aligned_cols=124 Identities=35% Similarity=0.450 Sum_probs=111.9
Q ss_pred CCceeccccccCCceeEeCCCCchhcccchhHHHHHHHc-----CCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCC
Q 025613 81 GVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRAD 155 (250)
Q Consensus 81 ~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~-----~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~ 155 (250)
..-+++.+|+. +++.++++.|+.++ +..+++. .+..++|+|.++++.|+|+.++|+..
T Consensus 130 ~e~taG~~Mt~--e~v~l~~~~Tv~~a-----l~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a---------- 192 (451)
T COG2239 130 PEDTAGRIMTT--EFVTLPEDVTVDEA-----LDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTA---------- 192 (451)
T ss_pred Chhhhhcccee--eeEEeccCcCHHHH-----HHHHHHhcccccccceEEEECCccceEEEeeHHHHhcC----------
Confidence 34479999999 99999999999999 9999853 35789999999999999999999942
Q ss_pred CCCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHH
Q 025613 156 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 235 (250)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil 235 (250)
.....+.++|.+.+++|.+++..+++++.|++++.-.+||||++++++|+||..|++
T Consensus 193 -----------------------~~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDii 249 (451)
T COG2239 193 -----------------------EPDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDII 249 (451)
T ss_pred -----------------------CcHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhh
Q 025613 236 RAALQIKHA 244 (250)
Q Consensus 236 ~~l~~~~~~ 244 (250)
..+.+...+
T Consensus 250 dvi~eEa~e 258 (451)
T COG2239 250 DVIEEEATE 258 (451)
T ss_pred HHHHHHHHH
Confidence 998887654
No 89
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=99.44 E-value=2e-13 Score=126.31 Aligned_cols=173 Identities=24% Similarity=0.288 Sum_probs=134.2
Q ss_pred hcCCeeeeeCCCcccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC
Q 025613 51 TSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD 130 (250)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~ 130 (250)
.....+...++-|++.++ .+..+++++++++|.+ +++.++..+.+..+ .+.++.+.+++|||+|+.
T Consensus 557 giYd~~i~LkgvP~Le~~-------pe~~mr~L~a~ev~~~--pvi~l~~~ekV~~I-----v~vLk~t~HngFPVvd~~ 622 (762)
T KOG0474|consen 557 GIYDIIIQLKGVPFLEWE-------PEPYMRNLTAGEVMSK--PVICLNRVEKVAVI-----VDVLKSTNHNGFPVVDEP 622 (762)
T ss_pred hhHHHhhhccCCccccCC-------CchHhhhhhHhhhccC--CeEEEechhhHHHH-----HHHHHhcCcCCCccccCC
Confidence 333467778889999988 4778889999999999 99999999999999 999999999999999852
Q ss_pred -----CcEEEEEehHHHHhhhhccCCC---CC-------CCCCCCCcccchhchHHHHHH-HhccCCCcccccccCCCeE
Q 025613 131 -----WKLVGLVSDYDLLALDSISGSG---RA-------DNSMFPEVDSTWKTFNEVQKL-LSKTNGKMVGDLMTPAPVV 194 (250)
Q Consensus 131 -----g~~~GiVt~~dL~~~~~~~~~~---~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~im~~~~~~ 194 (250)
+++.|+|-+..|...+...--. .. ....+.+..+..+.+++..-. .+...-.+++.+|++.|.+
T Consensus 623 ~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPyt 702 (762)
T KOG0474|consen 623 PSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYT 702 (762)
T ss_pred CCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcc
Confidence 5799999999998764432110 01 111111223333334443222 1234567899999999999
Q ss_pred ecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613 195 VRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237 (250)
Q Consensus 195 v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~ 237 (250)
|.+++++..++.+|++.|.+++.||+..+.++|++|++|+..+
T Consensus 703 V~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~ 745 (762)
T KOG0474|consen 703 VPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARY 745 (762)
T ss_pred cCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhH
Confidence 9999999999999999999999999988889999999999865
No 90
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.43 E-value=5.2e-13 Score=117.39 Aligned_cols=134 Identities=22% Similarity=0.240 Sum_probs=113.6
Q ss_pred CCCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCC
Q 025613 77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRAD 155 (250)
Q Consensus 77 ~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~ 155 (250)
.-.++.++|+|+|.++..+..++.+++.+++ .+.+....++.+|++.++ +.++|++..+|+++++...+
T Consensus 194 vLDLe~~tV~DIMvpR~~i~~id~d~~~e~i-----v~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~----- 263 (423)
T COG4536 194 VLDLENLTVSDIMVPRNEIIGIDIDDPWEEI-----VRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKN----- 263 (423)
T ss_pred ccccccceeeeeeccccceeeecCCCCHHHH-----HHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccC-----
Confidence 4577889999999999999999999999999 999999999999999865 67999999999998854221
Q ss_pred CCCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHH
Q 025613 156 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 235 (250)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil 235 (250)
.....++..+. .+|.+|++.+++.+-+..|++++.+...||||.|.+.|+||.+||+
T Consensus 264 ----------------------~~~k~d~~~~a-~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIl 320 (423)
T COG4536 264 ----------------------EFTKEDILRAA-DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDIL 320 (423)
T ss_pred ----------------------cccHhHHHHHh-cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHH
Confidence 01122233333 4588999999999999999999999999999999999999999999
Q ss_pred HHHHhhhh
Q 025613 236 RAALQIKH 243 (250)
Q Consensus 236 ~~l~~~~~ 243 (250)
+.+.....
T Consensus 321 EEIVGdft 328 (423)
T COG4536 321 EEIVGDFT 328 (423)
T ss_pred HHHhcccc
Confidence 99876554
No 91
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.34 E-value=1.6e-12 Score=107.89 Aligned_cols=131 Identities=21% Similarity=0.345 Sum_probs=112.8
Q ss_pred CCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCCCC
Q 025613 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNS 157 (250)
Q Consensus 79 ~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~~~ 157 (250)
....++|+|+|.++.+..+++.+.++.++ +..+.+..++.|||+.++ ..+.|++..+||+.++..
T Consensus 63 ~iadl~vrDiMIPRSQM~~l~~~~~l~~~-----l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~--------- 128 (293)
T COG4535 63 DIADLRVRDIMIPRSQMITLKRNQTLDEC-----LDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRS--------- 128 (293)
T ss_pred HHHHhhHhhhcccHHHheeccccCCHHHH-----HHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcC---------
Confidence 34567999999999999999999999999 999999999999999764 679999999999986431
Q ss_pred CCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613 158 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237 (250)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~ 237 (250)
......+.++.. +..+|+++-.+...++.|+....+.++|||+.|.+.|+||.+||++.
T Consensus 129 --------------------~~~~F~i~~lLR-Pav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEq 187 (293)
T COG4535 129 --------------------DAEPFDIKELLR-PAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQ 187 (293)
T ss_pred --------------------CcccccHHHhcc-cceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHH
Confidence 122356777764 47889999999999999999999999999999999999999999999
Q ss_pred HHhhhhh
Q 025613 238 ALQIKHA 244 (250)
Q Consensus 238 l~~~~~~ 244 (250)
+....+.
T Consensus 188 IVGdIED 194 (293)
T COG4535 188 IVGDIED 194 (293)
T ss_pred Hhccccc
Confidence 8765543
No 92
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.32 E-value=1.2e-11 Score=96.25 Aligned_cols=108 Identities=26% Similarity=0.298 Sum_probs=80.1
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++.++.+++++.++ ++.|.++++..+||+|++|+++|+|+..||++++......... ...+ -|
T Consensus 2 ~~~~v~~~~~l~ea-----~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~--~~~~---~~------- 64 (133)
T cd04592 2 KYIKVSPTTTLKEA-----LNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQ--PEDE---TK------- 64 (133)
T ss_pred CceEECCCCCHHHH-----HHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccc--cchh---hc-------
Confidence 57899999999999 9999999999999999989999999999999865321110000 0000 00
Q ss_pred HHHhccCCCccccc---------ccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC
Q 025613 174 KLLSKTNGKMVGDL---------MTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD 222 (250)
Q Consensus 174 ~~~~~~~~~~v~~i---------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~ 222 (250)
......+.++ |..+++++++++++.+|++.|.+++++.+||+|++
T Consensus 65 ----~~~~~~v~~i~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 65 ----QTNTCLVSSVCTKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred ----ccccccHHHHhhhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 0011122333 45678999999999999999999999999999864
No 93
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.27 E-value=2.1e-11 Score=80.44 Aligned_cols=56 Identities=50% Similarity=0.869 Sum_probs=53.1
Q ss_pred ccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 239 (250)
Q Consensus 184 v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~ 239 (250)
++++|.++++++++++++.++++.|.+.+.+++||+|++|+++|+||.+||++++.
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 46789999999999999999999999999999999999999999999999999875
No 94
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=99.14 E-value=1.5e-10 Score=102.87 Aligned_cols=186 Identities=26% Similarity=0.358 Sum_probs=129.1
Q ss_pred CeeeeccccccccccCCCCCCCCCCcccccccceecCCC---ChhHHHHHhhhcCC-eeeeeCCCcccccccccccCCCC
Q 025613 2 DSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSR---PGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAA 77 (250)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
|-++||..+.|..--..+..+.+. +..++.|++.... +-.+-.-.|..+.. -.....-.|...+...
T Consensus 34 DfliLPg~idF~s~eVsL~t~ltr--~itl~tPlvsSpMDTVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v------- 104 (503)
T KOG2550|consen 34 DFLILPGFIDFASDEVSLQTKLTR--NITLNTPLVSSPMDTVTESEMAIAMALLGGIGFIHHNCTPEDQADMV------- 104 (503)
T ss_pred ceeecccccccccccceeehhhhh--cccccCceeccCCcccchhHHHHHHHhcCCceeeecCCCHHHHHHHH-------
Confidence 556778777776554444444333 4445557665411 11223333444443 2222333343333321
Q ss_pred CCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeC---CCcEEEEEehHHHHhhhhccCCCCC
Q 025613 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRA 154 (250)
Q Consensus 78 ~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~---~g~~~GiVt~~dL~~~~~~~~~~~~ 154 (250)
+....+..+-++ +++++.|+.++.++ ++....+++.++||.++ .++++|+||.+|+-..
T Consensus 105 ~~vK~~~~g~~~----~p~v~sp~~tvg~v-----~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~--------- 166 (503)
T KOG2550|consen 105 RRVKNYENGFIN----NPIVISPTTTVGEV-----KEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL--------- 166 (503)
T ss_pred HHHHHhhccccc----CCcccCCcccchhh-----hhhcccccccccccccCCcccceeEEEEehhhhhhh---------
Confidence 111222222222 46889999999999 99999999999999974 3779999999999743
Q ss_pred CCCCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHH
Q 025613 155 DNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNV 234 (250)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Di 234 (250)
......+.++|++++++.+.+.++.++-+++.+.+...+||||++|.++.+|++.||
T Consensus 167 -----------------------~~~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl 223 (503)
T KOG2550|consen 167 -----------------------EDNSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDL 223 (503)
T ss_pred -----------------------hcccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhh
Confidence 345678999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 025613 235 VRA 237 (250)
Q Consensus 235 l~~ 237 (250)
.+.
T Consensus 224 ~k~ 226 (503)
T KOG2550|consen 224 MKN 226 (503)
T ss_pred hhh
Confidence 864
No 95
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.06 E-value=2.2e-09 Score=98.19 Aligned_cols=122 Identities=26% Similarity=0.295 Sum_probs=97.7
Q ss_pred CceeccccccCCc-eeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCC
Q 025613 82 VYTVGDFMTTKEE-LHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP 160 (250)
Q Consensus 82 ~~~v~~~m~~~~~-~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~ 160 (250)
.+++.++|..... .+...++.+..++ +..|...+...++|+|+++++.|+|+.+++.+...
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------------- 334 (400)
T PRK10070 273 VFSAKDIARRTPNGLIRKTPGFGPRSA-----LKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALT------------- 334 (400)
T ss_pred ccchhhhhhcCcccccccCCCCCHHHH-----HHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhh-------------
Confidence 3566677754111 1223355677788 99999999999999999999999999999986421
Q ss_pred CcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 161 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
....+.+.+.....++++++++.+++..+.+.... +||||++|+++|+||+.++++.+..
T Consensus 335 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 335 -------------------QQQGLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDR 394 (400)
T ss_pred -------------------cCCchhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence 12356777778888999999999999999998776 9999999999999999999999865
Q ss_pred h
Q 025613 241 I 241 (250)
Q Consensus 241 ~ 241 (250)
.
T Consensus 395 ~ 395 (400)
T PRK10070 395 E 395 (400)
T ss_pred c
Confidence 3
No 96
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.05 E-value=2.7e-09 Score=96.38 Aligned_cols=109 Identities=28% Similarity=0.405 Sum_probs=92.9
Q ss_pred eeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHH
Q 025613 95 LHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQK 174 (250)
Q Consensus 95 ~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (250)
.....++.+..++ ++.|...+.....|+|+++++.|+|+.+++..+..
T Consensus 252 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------------------------- 299 (363)
T TIGR01186 252 PITKTADKGPRSA-----LQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARK--------------------------- 299 (363)
T ss_pred ceeecCCCCHHHH-----HHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhh---------------------------
Confidence 3445566677888 99999989889999999999999999999986421
Q ss_pred HHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhh
Q 025613 175 LLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 241 (250)
Q Consensus 175 ~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~ 241 (250)
....+.+.|.....++++++++.+++..|.+.+.. +||+|++|+++|+||+.++++.+...
T Consensus 300 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 300 -----KAQGLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYDS 360 (363)
T ss_pred -----cCCchhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHhh
Confidence 12357777888888999999999999999999998 99999999999999999999998654
No 97
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.01 E-value=6e-10 Score=73.38 Aligned_cols=55 Identities=45% Similarity=0.685 Sum_probs=51.6
Q ss_pred eccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613 85 VGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 146 (250)
Q Consensus 85 v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~ 146 (250)
|+++|++ +++.+++++++.++ ++.|.++++.++||+|++|+++|+|+.+||++++
T Consensus 1 v~~~m~~--~~~~v~~~~~l~~~-----~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLEEA-----LEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHHHH-----HHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHHHH-----HHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence 4688998 89999999999999 9999999999999999999999999999999763
No 98
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.95 E-value=5.3e-09 Score=94.94 Aligned_cols=125 Identities=29% Similarity=0.416 Sum_probs=96.9
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
.+..+..++++.+| ++.|.+++++.+||+++.|+.+|+++..|+......... ..++. ....+
T Consensus 238 ~i~~i~~~~~v~~a-----l~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~--------~~~~~--~~l~~-- 300 (381)
T KOG1764|consen 238 NIASISEDTPVIEA-----LKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTY--------NNLDL--SCLSE-- 300 (381)
T ss_pred hheeecCCCcHHHH-----HHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCcc--------Cccch--hHHHH--
Confidence 48889999999999 999999999999999999999999999999875332111 00000 00000
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhhh
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 242 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~~ 242 (250)
.......-...+++++++.++.+++..|..++++++.|||++|.++|+||..|++.++....
T Consensus 301 -------~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~p 362 (381)
T KOG1764|consen 301 -------ALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLTP 362 (381)
T ss_pred -------HhhhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhCc
Confidence 01111122234799999999999999999999999999999999999999999999987653
No 99
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.90 E-value=5.6e-09 Score=97.34 Aligned_cols=161 Identities=19% Similarity=0.250 Sum_probs=109.0
Q ss_pred eeeeeCCCcccccccccccCCCCCCCCCceeccccccC---CceeEeCCC-CchhcccchhHHHHHHHcCCCeeEEEe--
Q 025613 55 RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTK---EELHVVKPT-TTVDEAFVPTALEILVEKRITGFPVID-- 128 (250)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~---~~~~~v~~~-~~v~~a~~~~~~~~~~~~~~~~~~Vvd-- 128 (250)
+....++-|+++... .....-..++|.+. +.+.+++.+ +++.+. ...|.++.+++|||+-
T Consensus 524 a~I~~ng~P~l~~k~---------e~~~t~~~~v~~p~~~~~~L~~i~~~s~tl~~l-----e~~~~~t~~sgfpvvl~~ 589 (696)
T KOG0475|consen 524 AHIELNGYPFLDSKS---------EFSSTLAIPVMEPCRSESCLIVITQDSMTLEDL-----ESLMEDTDFSGFPVVLSE 589 (696)
T ss_pred HHHHhcCCCCccccc---------ccccchhhhhhchhcCchhheeccccceeHHHH-----HHHHhhcccCCceEEEcc
Confidence 555667777775441 11122334455442 235566655 889999 9999999999999984
Q ss_pred CCCcEEEEEehHHHHhhhhccCC----CCCCCCCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHH
Q 025613 129 DDWKLVGLVSDYDLLALDSISGS----GRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDA 204 (250)
Q Consensus 129 ~~g~~~GiVt~~dL~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a 204 (250)
++.+++|+|.++|+.-....... ...+...+.+-.+.. .........+.++|+..|+++...+|.+.+
T Consensus 590 ~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~--------~~~~~~~~~lk~il~~tp~tv~d~tp~~~v 661 (696)
T KOG0475|consen 590 DSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSA--------VAGIPSRLDLKDILDMTPFTVTDLTPMETV 661 (696)
T ss_pred ccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccc--------cCCCCCCcCceeeccCCcccccccCcHHHH
Confidence 34779999999999754332111 011111111100000 001234567899999999999999999999
Q ss_pred HHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613 205 ARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 238 (250)
Q Consensus 205 ~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l 238 (250)
+.+|++.+.+.+.|.. +|++.|+||++|++++.
T Consensus 662 ~~~F~~lg~~~~~v~~-~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 662 VDLFRKLGLRQILVTK-NGILLGIITKKDCLRHT 694 (696)
T ss_pred HHHHHhhCceEEEEcc-CCeeEeeeehHHHHHhh
Confidence 9999999998887755 89999999999999874
No 100
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.64 E-value=1.9e-08 Score=93.51 Aligned_cols=163 Identities=11% Similarity=0.149 Sum_probs=115.1
Q ss_pred cccceecCCCChhHHHHHhhhcC------Ceee--eeCCCcc--cccccccccCCCCCCCCCceeccccccCCceeEeCC
Q 025613 31 LQLPCLLLSRPGCRVFSVLATSS------DRVS--ALRRSSA--VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKP 100 (250)
Q Consensus 31 ~~~~~~~~~~~~~~v~~~~~~~~------~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~ 100 (250)
..+.++..+.+..++.+.+.+.. ..+. ...+... ...+ .+ . ......+++++|++ +++++++
T Consensus 139 ~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~-dL--l---~a~~~~~v~~im~~--~~~~v~~ 210 (449)
T TIGR00400 139 IEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIR-DL--I---LAKPEEILSSIMRS--SVFSIVG 210 (449)
T ss_pred CceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHH-HH--h---cCCCCCcHHHHhCC--CCeeECC
Confidence 44567888999999998886411 1111 1111110 1000 00 0 01133479999998 8899999
Q ss_pred CCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHHHHhccC
Q 025613 101 TTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTN 180 (250)
Q Consensus 101 ~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (250)
++++.++ ++.|.++++..+||+|++|+++|+||.+|+.+.+.
T Consensus 211 ~~~~~ea-----l~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~--------------------------------- 252 (449)
T TIGR00400 211 VNDQEEV-----ARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQ--------------------------------- 252 (449)
T ss_pred CCCHHHH-----HHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHH---------------------------------
Confidence 9999999 99999999999999999999999999999997632
Q ss_pred CCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhhhhh
Q 025613 181 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHA 244 (250)
Q Consensus 181 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~~~~ 244 (250)
...-+++|....++..+++.+.++...|.+++..+++|. .+.|++| ..++..+.+...+
T Consensus 253 ~~~~ed~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~----~~~~~~t-~~ii~~f~~~l~~ 311 (449)
T TIGR00400 253 SEATEDFYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVL----LVSSTFT-ATIISNYEDLLLS 311 (449)
T ss_pred hhhHHHHHHhcCCCCCcchhhhchHHHHHHhccchHHHH----HHHHHHH-HHHHHHHHHHHHH
Confidence 112356676655555567888999999999999888885 5778888 7788776655443
No 101
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.62 E-value=1.4e-07 Score=70.17 Aligned_cols=103 Identities=18% Similarity=0.177 Sum_probs=71.2
Q ss_pred cceecCCCChhHHHHHhhhcCC-eeee--eCCCcc--cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVSA--LRRSSA--VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a 107 (250)
+.++..+.+..++...+..... .++. ..+.+. .... .+... ........++.++|.. ++.++++++++.++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~-dl~~~-~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a 78 (111)
T cd04603 3 TVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLS-DLLEI-GPNDYETLKVCEVYIV--PVPIVYCDSKVTDL 78 (111)
T ss_pred eEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHH-HHHhh-ccccccccChhheeec--CCcEECCCCcHHHH
Confidence 4466778888988888865543 2222 222211 1111 00000 0111123468899987 78999999999999
Q ss_pred cchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 108 FVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
++.|.+++...+||+|++|+++|+||.+|+++
T Consensus 79 -----l~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 79 -----LRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred -----HHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 99999999999999998899999999999985
No 102
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.56 E-value=9.9e-08 Score=82.03 Aligned_cols=65 Identities=31% Similarity=0.530 Sum_probs=59.1
Q ss_pred HHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613 173 QKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237 (250)
Q Consensus 173 ~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~ 237 (250)
+.+.....+..-.++|++++++++.++++.+|..+|.+++++.+||+|++.+++||||+.|+++.
T Consensus 236 qa~~R~~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~ 300 (382)
T COG3448 236 QALRRRMGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKH 300 (382)
T ss_pred HHHHHHhccccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhc
Confidence 34444567788999999999999999999999999999999999999999999999999999984
No 103
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=98.52 E-value=1.9e-07 Score=78.83 Aligned_cols=62 Identities=37% Similarity=0.526 Sum_probs=57.6
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhh
Q 025613 179 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 241 (250)
Q Consensus 179 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~ 241 (250)
.+..++.++|+++++++.+++++.+|..+|.+++++.+||+| +++++|++|..||..++.+-
T Consensus 169 iPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd-~dk~vGiit~~dI~~aia~g 230 (294)
T COG2524 169 IPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVD-DDKIVGIITLSDIAKAIANG 230 (294)
T ss_pred cCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceec-CCceEEEEEHHHHHHHHHcC
Confidence 356789999999999999999999999999999999999999 56999999999999999873
No 104
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.48 E-value=3.2e-07 Score=68.99 Aligned_cols=55 Identities=38% Similarity=0.556 Sum_probs=51.3
Q ss_pred CcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 182 KMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 182 ~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
.++.++|.+++.++++++++.++++.|.+.+.+.+||+|++|+++|+||..||.+
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 5689999999999999999999999999999999999998899999999999864
No 105
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.45 E-value=5.2e-08 Score=92.79 Aligned_cols=143 Identities=21% Similarity=0.315 Sum_probs=96.9
Q ss_pred CCceeccccc-cCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCC
Q 025613 81 GVYTVGDFMT-TKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF 159 (250)
Q Consensus 81 ~~~~v~~~m~-~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~ 159 (250)
...+++++|+ + +++++++++++.++ .+.|.++++..+||+|++|+++|+|+..|+.+.....- -.-+....
T Consensus 244 ~~~~V~~iM~~~--~~~~~~~~~~~~~~-----~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~-iLVD~~e~ 315 (546)
T PRK14869 244 QSIPVSYIMTTE--DLVTFSKDDYLEDV-----KEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKV-ILVDHNEK 315 (546)
T ss_pred cCCCHHHhccCC--CcEEECCCCcHHHH-----HHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCce-EEEcCccc
Confidence 4568999999 6 89999999999999 99999999999999999999999999999997421100 00000000
Q ss_pred CCcccchhchHHHHHHHhccCCCcccccccCCCeEe---cCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 160 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVV---RETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v---~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
... ...+.+ ....+-....+++++|...|+.+ +..++...+.++|.+.++...|++. ..-+.||++-.+.++
T Consensus 316 ~q~---~~~~~~-~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia-~~ll~gIlsDT~~f~ 390 (546)
T PRK14869 316 SQA---VEGIEE-AEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIA-GLLLAAILSDTLLFK 390 (546)
T ss_pred ccc---ccchhh-ceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHHhcCcc
Confidence 000 000000 00000112335667888777665 4467788899999999998888776 446778887777664
No 106
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.44 E-value=5.4e-07 Score=67.29 Aligned_cols=105 Identities=14% Similarity=0.214 Sum_probs=72.9
Q ss_pred cceecCCCChhHHHHHhhhcCC-eeeee--CCCcc--cc-cccccccCCCCCCCCCceeccccccCCceeEeCCCCchhc
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVSAL--RRSSA--VF-ASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE 106 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~--~~~~~--~~-~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~ 106 (250)
+-++..+.++.++...+.+... .++.. .+.+. .. .+...............+++++|.. +++++.+++++.+
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~ 80 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTR--AVVSCRPGDLLHD 80 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcC--CCeeECCCCCHHH
Confidence 3456778889998888876654 33322 22211 11 1110000000112334578899988 8899999999999
Q ss_pred ccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 107 AFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 107 a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
+ ++.|.+++...+||+|++|+++|+|+.+|++.
T Consensus 81 a-----~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 81 V-----WQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred H-----HHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 9 99999999999999998899999999999874
No 107
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=98.42 E-value=6.1e-07 Score=70.64 Aligned_cols=79 Identities=25% Similarity=0.396 Sum_probs=64.1
Q ss_pred ccchhchHHHHHHHhc--cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 163 DSTWKTFNEVQKLLSK--TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 163 ~~~~~~~~~~~~~~~~--~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
++.+.+++.+....+. ........+|+.+.+.+++++++.+++.+|.++|+..+||+++ |+++|-||..+|.+...+
T Consensus 44 dPrlSt~k~Il~aL~e~e~~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le 122 (187)
T COG3620 44 DPRLSTVKRILEALEEAEKTRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLE 122 (187)
T ss_pred CccHHHHHHHHHHHHHhhcceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhc
Confidence 3444445554443332 2446678899999999999999999999999999999999994 999999999999999866
Q ss_pred hh
Q 025613 241 IK 242 (250)
Q Consensus 241 ~~ 242 (250)
..
T Consensus 123 ~~ 124 (187)
T COG3620 123 GM 124 (187)
T ss_pred cc
Confidence 54
No 108
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.38 E-value=2.9e-06 Score=79.72 Aligned_cols=162 Identities=24% Similarity=0.302 Sum_probs=103.1
Q ss_pred cccceecCCCChhHHHHHhhhcCC-eeeeeCCCc-----ccccccccccCCCCCCCCCceeccccc-cCCceeEeCCCCc
Q 025613 31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS-----AVFASGTLTANSAAPSSGVYTVGDFMT-TKEELHVVKPTTT 103 (250)
Q Consensus 31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~m~-~~~~~~~v~~~~~ 103 (250)
..+.++..+.++.++...+.+... .++...+.. +...+.. . ......++.++|+ . ++++++++++
T Consensus 95 ~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~--~----~~~~~~~V~dim~~~--~~v~v~~~~s 166 (486)
T PRK05567 95 TDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVR--F----ETDLSQPVSEVMTKE--RLVTVPEGTT 166 (486)
T ss_pred CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhh--h----cccCCCcHHHHcCCC--CCEEECCCCC
Confidence 456677888899998888876654 444333211 0111100 0 0112346889997 4 7899999999
Q ss_pred hhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHHHHhccCCCc
Q 025613 104 VDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKM 183 (250)
Q Consensus 104 v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (250)
+.++ ++.|.++++..+||+|++|+++|+||..||++....... .........
T Consensus 167 l~ea-----l~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a-----------------------~~d~~g~l~ 218 (486)
T PRK05567 167 LEEA-----LELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNA-----------------------CKDEQGRLR 218 (486)
T ss_pred HHHH-----HHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCc-----------------------ccccCCCEE
Confidence 9999 999999999999999999999999999999975311000 000111233
Q ss_pred ccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEehHHHHH
Q 025613 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA-DGKLVGIITRGNVVR 236 (250)
Q Consensus 184 v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~-~g~~vGiIt~~Dil~ 236 (250)
+...|..++ .+ .+.++.|.+.+++.+ |+|. +|+..|+++.-+.++
T Consensus 219 V~aai~~~~------~~-~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~ 264 (486)
T PRK05567 219 VGAAVGVGA------DN-EERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIK 264 (486)
T ss_pred EEeecccCc------ch-HHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHH
Confidence 455554432 12 667777788999854 5653 577666554444433
No 109
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.37 E-value=1.7e-06 Score=63.71 Aligned_cols=98 Identities=21% Similarity=0.254 Sum_probs=71.7
Q ss_pred cceecCCCChhHHHHHhhhcCC-eeeeeCC--Ccc---cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhc
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVSALRR--SSA---VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE 106 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~ 106 (250)
+.++..+.+..++...+.+... .++...+ .+. ...+. .......+++++|.. ++.++++++++.+
T Consensus 4 ~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l-------~~~~~~~~v~~~~~~--~~~~v~~~~~l~~ 74 (108)
T cd04596 4 TGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDV-------AGKDPDTTIEKVMTK--NPITVNPKTSVAS 74 (108)
T ss_pred cEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHH-------hcccccccHHHHhcC--CCeEECCCCCHHH
Confidence 4567788899998888876653 3333322 111 11110 011124468899987 7899999999999
Q ss_pred ccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 107 AFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 107 a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
+ ++.|.+++...+||++++|+++|+++..|+.+
T Consensus 75 ~-----~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 75 V-----AHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred H-----HHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 9 99999999999999998899999999999974
No 110
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.33 E-value=1.1e-06 Score=66.03 Aligned_cols=83 Identities=22% Similarity=0.231 Sum_probs=61.8
Q ss_pred eeeeeCCCcccccccccccCCC--CCCCCC--ceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC
Q 025613 55 RVSALRRSSAVFASGTLTANSA--APSSGV--YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD 130 (250)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~ 130 (250)
+...+.+++....++.+..... ...+.. .+++++|.. ++.++++++++.++ ++.|.+.++..+||+|++
T Consensus 26 ~~~~~~g~~n~e~~~vl~~~~~~~p~ll~~v~~~v~dim~~--~~~~v~~~~~l~~a-----~~~~~~~~~~~lpVvd~~ 98 (113)
T cd04597 26 VTAARLGEPNPQTRYVLEYLGIEPPILLADVHPRVRDVINR--KPVTARPNDPLREA-----LNLMHEHNIRTLPVVDDD 98 (113)
T ss_pred eeehhcCCCCHHHHHHHHHcCCCCchhhcchhhhHHHhcCC--CCCEECCcCcHHHH-----HHHHHHcCCCEEEEECCC
Confidence 4455555555555433322110 111222 679999988 88999999999999 999999999999999988
Q ss_pred CcEEEEEehHHHHh
Q 025613 131 WKLVGLVSDYDLLA 144 (250)
Q Consensus 131 g~~~GiVt~~dL~~ 144 (250)
|+++|+|+..||..
T Consensus 99 ~~l~Givt~~dl~~ 112 (113)
T cd04597 99 GTPAGIITLLDLAE 112 (113)
T ss_pred CeEEEEEEHHHhhc
Confidence 99999999999973
No 111
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.33 E-value=2.5e-06 Score=62.46 Aligned_cols=94 Identities=19% Similarity=0.281 Sum_probs=67.3
Q ss_pred ccceecCCCChhHHHHHhhhcCC-eeeeeCCCcccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcccch
Q 025613 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVP 110 (250)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~ 110 (250)
++..+..+.+..++...+.+... .++...+. + ....+-++..|+.... .+.++.+++++.++
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-----~--------~~~~Givt~~Dl~~~~-~~~~v~~~~~l~~a--- 64 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSR-----K--------QQFVGMLTITDFILIL-RLVSIHPERSLFDA--- 64 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCC-----C--------CEEEEEEEHHHHhhhe-eeEEeCCCCcHHHH---
Confidence 34567788999999988866653 33322210 0 1122333445544331 16789999999999
Q ss_pred hHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHh
Q 025613 111 TALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLA 144 (250)
Q Consensus 111 ~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~ 144 (250)
++.|.++++..+||+|++ |+++|+|+.+|++.
T Consensus 65 --~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 65 --ALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred --HHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 999999999999999987 99999999999974
No 112
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.30 E-value=1.8e-06 Score=64.82 Aligned_cols=107 Identities=16% Similarity=0.185 Sum_probs=70.8
Q ss_pred cceecCCCChhHHHHHhhhcCC-eee--eeCCCcc--cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVS--ALRRSSA--VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a 107 (250)
+.++..+.++.++...|..+.. ..+ ..++... ...................+++++|....+++++++++++.++
T Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~ 82 (118)
T cd04617 3 PVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESVLEA 82 (118)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcHHHH
Confidence 4567778888888888755443 222 2222211 1111000000011223355677888732258899999999999
Q ss_pred cchhHHHHHHHcCCCeeEEEeCC---CcEEEEEehHHHHh
Q 025613 108 FVPTALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLA 144 (250)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~Vvd~~---g~~~GiVt~~dL~~ 144 (250)
++.|.++++..+||+|++ |+++|+||..|+.+
T Consensus 83 -----~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 83 -----AKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred -----HHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 999999999999999976 69999999999874
No 113
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.29 E-value=2.6e-06 Score=63.38 Aligned_cols=104 Identities=15% Similarity=0.234 Sum_probs=69.6
Q ss_pred cceecCCCChhHHHHHhhhcC-C-eeeeeC-CCc---ccccccccccCCCCCCCCCceeccccccCCceeEeCCC--Cch
Q 025613 33 LPCLLLSRPGCRVFSVLATSS-D-RVSALR-RSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPT--TTV 104 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~-~-~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~--~~v 104 (250)
.+++..+.+..++...+.... . .++... +.. +...+. .............++.++|.. +++++.++ +++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl-~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~~~l 79 (115)
T cd04620 3 PLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDI-VRLTAIGKDLSDLPIGEVMTQ--PVVTLQESEIQDI 79 (115)
T ss_pred CeEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHH-HHHHhcCCCccccCHHHhcCC--CcEEEecccccCH
Confidence 345677888888888886554 2 233222 211 111110 000000111223568899987 78888877 688
Q ss_pred hcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 105 DEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 105 ~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
.++ ++.|.+++...+||+|++|+++|+|+.+|+++
T Consensus 80 ~~a-----~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 80 FTA-----LSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred HHH-----HHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 999 99999999999999998899999999999975
No 114
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.26 E-value=3.5e-06 Score=63.41 Aligned_cols=104 Identities=23% Similarity=0.325 Sum_probs=72.2
Q ss_pred cceecCCCChhHHHHHhhhcCC-eeeeeCC--Ccc--cc-cccccccCCCCC----------CCCCceeccccccCCcee
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVSALRR--SSA--VF-ASGTLTANSAAP----------SSGVYTVGDFMTTKEELH 96 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~~~--~~-~~~~~~~~~~~~----------~~~~~~v~~~m~~~~~~~ 96 (250)
++++..+.++.++...+.+... .++...+ .+. .. .+. ........ .....+++++|.. .++
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~ 80 (124)
T cd04600 4 VVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDL-LRHARPDGRRPLRGRLRGRDKPETVGDIMSP--PVV 80 (124)
T ss_pred cEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHH-HhhhcccccchhhhhhhcccccccHHHhccC--CCe
Confidence 4567778888888888765543 3333322 211 11 110 00000000 1234478899987 899
Q ss_pred EeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 97 VVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 97 ~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
++++++++.++ ++.|.+++...+||+|++|+++|+|+..|+++
T Consensus 81 ~~~~~~~l~~~-----~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 81 TVRPDTPIAEL-----VPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred eeCCCCcHHHH-----HHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 99999999999 99999999999999998899999999999974
No 115
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.24 E-value=4.9e-06 Score=51.18 Aligned_cols=47 Identities=51% Similarity=0.784 Sum_probs=43.0
Q ss_pred CeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613 192 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 238 (250)
Q Consensus 192 ~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l 238 (250)
++++.+++++.++++.|.+.+...+||++++++++|+++..++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 57889999999999999999999999999878999999999998764
No 116
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.23 E-value=4.1e-06 Score=61.97 Aligned_cols=103 Identities=18% Similarity=0.264 Sum_probs=71.5
Q ss_pred ceecCCCChhHHHHHhhhcCC-eeeeeCC--Ccc---cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613 34 PCLLLSRPGCRVFSVLATSSD-RVSALRR--SSA---VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107 (250)
Q Consensus 34 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a 107 (250)
.++..+.+..+++..+.+... .++...+ .+. ...+...... ........++.++|.. ++.++++++++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~-~~~~~~~~~i~~~~~~--~~~~v~~~~~l~~~ 80 (113)
T cd04615 4 SCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYAL-ESEELKDAKVREVMNS--PVITIDANDSIAKA 80 (113)
T ss_pred EEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhh-hhhhhcCCcHHHhccC--CceEECCCCcHHHH
Confidence 456677888888887766554 3333322 221 1111100000 1222344578899987 78999999999999
Q ss_pred cchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 108 FVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
++.|.+++...+||++++|+++|+|+..|+.+
T Consensus 81 -----~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 81 -----RWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred -----HHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 99999999999999998899999999999974
No 117
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.23 E-value=1.6e-05 Score=74.78 Aligned_cols=103 Identities=22% Similarity=0.207 Sum_probs=75.8
Q ss_pred cceecCCCChhHHHHHhhhcCC-eeeeeCC-----C---cccccccccccCCCCCCCCCceeccccccCCceeEeCCCCc
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVSALRR-----S---SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTT 103 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~ 103 (250)
.+.+..+.++.++...|.+... .++...+ . .+...+... .......+++++|++.+++++++++++
T Consensus 107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~-----~~~~~~~~V~dIMt~~~~~itv~~d~~ 181 (502)
T PRK07107 107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRI-----SRMSLDTKVKDFMTPFEKLVTANEGTT 181 (502)
T ss_pred CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhc-----cccCCCCCHHHHhCCCCCeEEECCCCc
Confidence 3577888999999988876654 3332221 0 011111100 112345679999996557899999999
Q ss_pred hhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613 104 VDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 145 (250)
Q Consensus 104 v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~ 145 (250)
+.+| ++.|.++++..+||+|++|+++|+||.+|+++.
T Consensus 182 l~eA-----l~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 182 LKEA-----NDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH 218 (502)
T ss_pred HHHH-----HHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence 9999 999999999999999988999999999999974
No 118
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.23 E-value=4.5e-06 Score=62.09 Aligned_cols=104 Identities=13% Similarity=0.162 Sum_probs=71.1
Q ss_pred cceecCCCChhHHHHHhhhcCC-eeeeeC---CCcc--cc-cccccccCCCCCCCCCceeccccccCCceeEeCCCCchh
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVSALR---RSSA--VF-ASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD 105 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~---~~~~--~~-~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~ 105 (250)
++.+..+.+..++...+.++.. .++... +... .. .+...............++.++|.. +++++++++++.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~ 80 (114)
T cd04630 3 VVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTK--PLISVSPDMDIK 80 (114)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcC--CCeeECCCCCHH
Confidence 4556777888888888866554 333222 1111 11 1110000000112234578899987 799999999999
Q ss_pred cccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 106 EAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
++ ++.|.+++...+||+|+ |+++|+|+..|+.+
T Consensus 81 ~~-----~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 81 YC-----ARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred HH-----HHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 99 99999999999999997 89999999999974
No 119
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.22 E-value=5.5e-06 Score=62.28 Aligned_cols=49 Identities=33% Similarity=0.491 Sum_probs=45.2
Q ss_pred CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613 191 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 239 (250)
Q Consensus 191 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~ 239 (250)
++.++++++++.+|++.|.+.+.+.+||+|++|+++|++|.+|++.+..
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~ 50 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAK 50 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHh
Confidence 5688999999999999999999999999998899999999999997654
No 120
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.21 E-value=6.7e-06 Score=60.57 Aligned_cols=104 Identities=24% Similarity=0.258 Sum_probs=70.8
Q ss_pred cceecCCCChhHHHHHhhhcCC-eeeeeC--CCcc---cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhc
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVSALR--RSSA---VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE 106 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~ 106 (250)
+.++..+.++.++...+..... .++... +.+. ...+...............+++++|.. ++..+.+++++.+
T Consensus 3 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~ 80 (113)
T cd04623 3 VITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTR--NVITVTPDDTVDE 80 (113)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCC--CcEEECCCCcHHH
Confidence 3456678888888888765543 344332 2211 111110000000112224578899987 7899999999999
Q ss_pred ccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 107 AFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 107 a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
+ ++.|.+.+...+||+++ |+++|+|+..|+.+
T Consensus 81 ~-----l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 81 A-----MALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred H-----HHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 9 99999999999999997 89999999999974
No 121
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=98.21 E-value=5.5e-06 Score=61.22 Aligned_cols=105 Identities=22% Similarity=0.251 Sum_probs=71.6
Q ss_pred ccceecCCCChhHHHHHhhhcCC-eeeeeC--CCcc---cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchh
Q 025613 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALR--RSSA---VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD 105 (250)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~ 105 (250)
.++.+..+.+..++...+..... .++... +.+. ...+...... ........++.++|.+ +..++.+++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~-~~~~~~~~~v~~~~~~--~~~~v~~~~~~~ 79 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALE-KGLDILTLPVADVMTR--NPKTIDPDALAA 79 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHh-ccCccccCCHHHhhcc--CCeEECCCCcHH
Confidence 34566778888888887765443 333322 2221 1111000000 0112223468899988 788999999999
Q ss_pred cccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 106 EAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
++ ++.|.+++...+||++++|+++|+|+..||++
T Consensus 80 ~~-----~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 80 EA-----LELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred HH-----HHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 99 99999999999999998899999999999974
No 122
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.20 E-value=7.3e-06 Score=60.43 Aligned_cols=57 Identities=23% Similarity=0.445 Sum_probs=51.6
Q ss_pred CceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613 82 VYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 145 (250)
Q Consensus 82 ~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~ 145 (250)
..+++++|.+ ++..+.+++++.++ ++.|.+++...+||++++|+++|+|+..||++.
T Consensus 52 ~~~v~~~~~~--~~~~i~~~~~~~~~-----~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDT--DVISVSADDDQEEV-----ARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCC--CCeEEcCCCCHHHH-----HHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 4568899987 78999999999999 999999999999999988999999999999853
No 123
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.19 E-value=7.3e-06 Score=63.61 Aligned_cols=50 Identities=36% Similarity=0.474 Sum_probs=46.3
Q ss_pred CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 191 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 191 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
+++++.+++++.+|++.|.+.+...+||+|++|+++|+||..|+++++..
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~ 51 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFT 51 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhh
Confidence 57899999999999999999999999999988999999999999998764
No 124
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.19 E-value=7.9e-06 Score=60.58 Aligned_cols=100 Identities=18% Similarity=0.153 Sum_probs=69.0
Q ss_pred eecCCCChhHHHHHhhhcCC-eeeee--CCCcc--cc-cccccccCCCCCCCCCceeccccccCCceeEeCCCCchhccc
Q 025613 35 CLLLSRPGCRVFSVLATSSD-RVSAL--RRSSA--VF-ASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAF 108 (250)
Q Consensus 35 ~~~~~~~~~~v~~~~~~~~~-~~~~~--~~~~~--~~-~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~ 108 (250)
.+..+.++.++...+..... .++.. .+.+. .. .+...... .......++.++|.+ .+.++++++++.++
T Consensus 6 ~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~--~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~- 80 (113)
T cd04607 6 LVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALL--KGLSLDDPVSEVMNR--NPITAKVGSSREEI- 80 (113)
T ss_pred EECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHh--cCCCcCCCHHHhhcC--CCEEEcCCCCHHHH-
Confidence 45677788888888865543 23322 22211 11 11000000 111123468899987 78899999999999
Q ss_pred chhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHH
Q 025613 109 VPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143 (250)
Q Consensus 109 ~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~ 143 (250)
++.|.+++...+||++++|+++|+|+.+|++
T Consensus 81 ----~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~ 111 (113)
T cd04607 81 ----LALMRERSIRHLPILDEEGRVVGLATLDDLL 111 (113)
T ss_pred ----HHHHHHCCCCEEEEECCCCCEEEEEEhHHhc
Confidence 9999999999999999889999999999987
No 125
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=98.19 E-value=6.3e-06 Score=73.26 Aligned_cols=104 Identities=19% Similarity=0.201 Sum_probs=74.8
Q ss_pred cceecCCCChhHHHHHhhhcCC-eeeee--CCCcc--cc-cccccccCCCCCCCCCceeccccccCCceeEeCCCCchhc
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVSAL--RRSSA--VF-ASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE 106 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~--~~~~~--~~-~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~ 106 (250)
++.+..+.++.++...+..... .++.. ++.+. .. .+...... .......+++++|++ +++++.+++++.+
T Consensus 209 ~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~--~~~~~~~~v~~im~~--~~~~v~~~~~l~~ 284 (321)
T PRK11543 209 IPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLV--GGGALTTPVNEAMTR--GGTTLQAQSRAID 284 (321)
T ss_pred CcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHh--CCCCcCCcHHHhcCC--CCEEECCCCCHHH
Confidence 6778889999999988866553 33322 22211 11 11100000 111223468899998 8899999999999
Q ss_pred ccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613 107 AFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 145 (250)
Q Consensus 107 a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~ 145 (250)
+ ++.|.+++...+||+|++|+++|+|+..|+.++
T Consensus 285 a-----~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 285 A-----KEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred H-----HHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 9 999999999999999988999999999999864
No 126
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.18 E-value=3.3e-06 Score=62.78 Aligned_cols=104 Identities=20% Similarity=0.248 Sum_probs=69.2
Q ss_pred cceecCCCChhHHHHHhhhcC-C-eeeee--CCCcc---cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchh
Q 025613 33 LPCLLLSRPGCRVFSVLATSS-D-RVSAL--RRSSA---VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD 105 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~-~-~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~ 105 (250)
++.+..+.++.++...+.... . .++.. .+.+. ...+. .... .......++.++|.+...++++.+++++.
T Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl-~~~~--~~~~~~~~v~~~~~~~~~~~~v~~~~~l~ 79 (114)
T cd04801 3 FPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADL-RAIP--TSQWAQTTVIQVMTPAAKLVTVLSEESLA 79 (114)
T ss_pred cceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHH-HHHH--HhhccccchhhhhcccccceEECCCCcHH
Confidence 456777888888888765432 2 33322 22211 11110 0000 01112356888897532467899999999
Q ss_pred cccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 106 EAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
++ ++.|.+++.+.+||+|++|+++|+|+.+|+.+
T Consensus 80 ~a-----~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 80 EV-----LKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred HH-----HHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 99 99999999999999998899999999999864
No 127
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.18 E-value=3.7e-05 Score=72.04 Aligned_cols=103 Identities=21% Similarity=0.221 Sum_probs=75.8
Q ss_pred cccccceecCCCChhHHHHHhhhcCC-eeeeeCCC--c---ccccccccccCCCCCCCCCceeccccccCCceeEeCCCC
Q 025613 29 FALQLPCLLLSRPGCRVFSVLATSSD-RVSALRRS--S---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTT 102 (250)
Q Consensus 29 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~ 102 (250)
+...+..+..+.++.++...|.+... .++...+. + +...+. . ......+++++|+. +++++++++
T Consensus 95 Mi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL----~---~~~~~~~V~diMt~--~~itV~~d~ 165 (479)
T PRK07807 95 VFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADC----A---GVDRFTQVRDVMST--DLVTLPAGT 165 (479)
T ss_pred cccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHH----h---cCccCCCHHHhccC--CceEECCCC
Confidence 34456677889999999998876654 33322211 1 111110 0 00112468999998 899999999
Q ss_pred chhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613 103 TVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 145 (250)
Q Consensus 103 ~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~ 145 (250)
++.++ ++.|.++++..+||+|++|+++|+||..||++.
T Consensus 166 sL~eA-----l~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~ 203 (479)
T PRK07807 166 DPREA-----FDLLEAARVKLAPVVDADGRLVGVLTRTGALRA 203 (479)
T ss_pred cHHHH-----HHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHH
Confidence 99999 999999999999999988999999999999975
No 128
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=98.18 E-value=7.6e-06 Score=60.89 Aligned_cols=103 Identities=19% Similarity=0.259 Sum_probs=69.6
Q ss_pred ceecCCCChhHHHHHhhhcCC-eeeeeC--CCcc--cc-cccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613 34 PCLLLSRPGCRVFSVLATSSD-RVSALR--RSSA--VF-ASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107 (250)
Q Consensus 34 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~~--~~-~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a 107 (250)
+.+..+.+..++...+..... .++... +... .. .+... ...........+++++|.. +++++.+++++.++
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~-~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~ 80 (115)
T cd04593 4 PVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLR-ALEADEAGEPSAVDEVATP--PLLTVHPDEPLAHA 80 (115)
T ss_pred cEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHH-HHhcccccccccHHHhccC--CceEECCCCCHHHH
Confidence 456677888888888866543 333222 2211 11 11000 0000111223347788887 89999999999999
Q ss_pred cchhHHHHHHHcCCCeeEEEeCC--CcEEEEEehHHHHh
Q 025613 108 FVPTALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLA 144 (250)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~Vvd~~--g~~~GiVt~~dL~~ 144 (250)
++.|.+++...+||+|++ |+++|+|+..|+.+
T Consensus 81 -----l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 81 -----LDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred -----HHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 999999999999999987 79999999999974
No 129
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.16 E-value=6.3e-06 Score=60.67 Aligned_cols=100 Identities=14% Similarity=0.196 Sum_probs=69.4
Q ss_pred cceecCCCChhHHHHHhhhcCC-eeeeeC--CCcc---cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhc
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVSALR--RSSA---VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE 106 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~ 106 (250)
++.+..+.+..++...+.+... .++... +.+. ...+. .... ......+.++|.. ++..+++++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l-~~~~----~~~~~~~~~~~~~--~~~~v~~~~~l~~ 76 (110)
T cd04605 4 VVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDI-SKAV----ARDKKSVEDIMTR--NVITATPDEPIDV 76 (110)
T ss_pred CEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHH-HHHH----hhCccCHHHhcCC--CCeEECCCCcHHH
Confidence 4456778888888887765543 333222 2211 11111 0000 0011247888877 7899999999999
Q ss_pred ccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 107 AFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 107 a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
+ ++.|.+++...+||++++|+++|+|+..|+.+
T Consensus 77 ~-----~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 77 A-----ARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred H-----HHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 9 99999999999999998899999999999964
No 130
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=98.16 E-value=4.9e-06 Score=61.21 Aligned_cols=103 Identities=20% Similarity=0.192 Sum_probs=71.6
Q ss_pred cceecCCCChhHHHHHhhhcCC-eeeeeCC-Ccc---cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVSALRR-SSA---VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a 107 (250)
++.+..+.++.++.+.+.+... .++...+ .+. ...+...... .......+++++|.. +++.+++++++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~~~~~--~~~~~~~~v~~~~~~--~~~~~~~~~~l~~~ 78 (111)
T cd04611 3 ILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDILRLLA--SGPDLQTPVGEVMSS--PLLTVPADTSLYDA 78 (111)
T ss_pred ceEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHHHHHh--cCCCCCcCHHHhcCC--CceEECCCCCHHHH
Confidence 5567788888988888765543 3332222 111 1111000000 111145678899987 88999999999999
Q ss_pred cchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 108 FVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
++.|.+.+...+||+|++|+++|+|+.+|+.+
T Consensus 79 -----l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 79 -----RQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred -----HHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 99999999999999998899999999999974
No 131
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=98.16 E-value=6.5e-06 Score=60.75 Aligned_cols=104 Identities=22% Similarity=0.298 Sum_probs=72.3
Q ss_pred cceecCCCChhHHHHHhhhcCC-eeeeeCC--Cc---ccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhc
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVSALRR--SS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE 106 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~ 106 (250)
++.+..+.++.++...+..... .++...+ .. +...+. .............++.++|.+ ++.++++++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l-~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~ 79 (114)
T cd04613 3 VVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDI-REILFDPSLYDLVVASDIMTK--PPVVVYPEDSLED 79 (114)
T ss_pred ceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHH-HHHHhcccccccEEHHHhccC--CCcEEcCCCCHHH
Confidence 3456778888888888876553 3333322 11 111111 000001112223678899988 8999999999999
Q ss_pred ccchhHHHHHHHcCCCeeEEEeC-CCcEEEEEehHHHHh
Q 025613 107 AFVPTALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLA 144 (250)
Q Consensus 107 a~~~~~~~~~~~~~~~~~~Vvd~-~g~~~GiVt~~dL~~ 144 (250)
+ ++.|.+.+...+||+++ +|+++|+|+..|+.+
T Consensus 80 ~-----~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 80 A-----LKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred H-----HHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 9 99999999999999997 789999999999974
No 132
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.14 E-value=5.5e-06 Score=61.09 Aligned_cols=101 Identities=17% Similarity=0.179 Sum_probs=68.6
Q ss_pred ceecCCCChhHHHHHhhhcCC-eeeeeC--CCcc---cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613 34 PCLLLSRPGCRVFSVLATSSD-RVSALR--RSSA---VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107 (250)
Q Consensus 34 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a 107 (250)
.++..+.+..++...+.+... .++... +.+. ...+...... ......++.++|.. +++.+.+++++.++
T Consensus 4 ~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~---~~~~~~~v~~~~~~--~~~~i~~~~~~~~~ 78 (111)
T cd04639 4 ETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALA---EGGPDAPVRGVMRR--DFPTVSPSATLDAV 78 (111)
T ss_pred eEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHH---hcCCCCcHHHHhcC--CCcEECCCCcHHHH
Confidence 456677888888877754432 333222 2211 1111000000 01122468889987 89999999999999
Q ss_pred cchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 108 FVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
++.|.+++...+||++++|+++|+|+..|+.+
T Consensus 79 -----~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 79 -----LRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred -----HHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 99999999999999998799999999999974
No 133
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.13 E-value=8.9e-06 Score=59.09 Aligned_cols=47 Identities=38% Similarity=0.529 Sum_probs=43.5
Q ss_pred CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613 191 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237 (250)
Q Consensus 191 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~ 237 (250)
+++++.+++++.+|++.|.+.+...+||+|++|+++|+++.+|++..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~ 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC
Confidence 57889999999999999999999999999988999999999999863
No 134
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.13 E-value=1.2e-05 Score=58.55 Aligned_cols=98 Identities=19% Similarity=0.260 Sum_probs=68.0
Q ss_pred ceecCCCChhHHHHHhhhcCC-eeeeeC-CCcccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcccchh
Q 025613 34 PCLLLSRPGCRVFSVLATSSD-RVSALR-RSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPT 111 (250)
Q Consensus 34 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~ 111 (250)
..+..+.+..++...+.+... ..+... +.+. + .+............++.++|.+ ++.++++++++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~--G--iv~~~~l~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~---- 73 (105)
T cd04599 4 ITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLV--G--IITSRDVRRAHPNRLVADAMTR--EVVTISPEASLLEA---- 73 (105)
T ss_pred EEECCCCcHHHHHHHHHHcCCCEEEEEECCEEE--E--EEehHHhhcccccCCHHHHccC--CCEEECCCCCHHHH----
Confidence 456677888888887766543 333222 2211 0 0000000011123457889987 89999999999999
Q ss_pred HHHHHHHcCCCeeEEEeCCCcEEEEEehHHHH
Q 025613 112 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143 (250)
Q Consensus 112 ~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~ 143 (250)
++.|.+++...+||+++ |+++|+||..|+.
T Consensus 74 -~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~ 103 (105)
T cd04599 74 -KRLMEEKKIERLPVLRE-RKLVGIITKGTIA 103 (105)
T ss_pred -HHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence 99999999999999997 9999999999986
No 135
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.12 E-value=7.7e-06 Score=61.34 Aligned_cols=105 Identities=24% Similarity=0.283 Sum_probs=70.9
Q ss_pred cceecCCCChhHHHHHhhhcCC-eeeeeC--CCcc---cccccccccCC-CCC-------CCCCceeccccccCCceeEe
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVSALR--RSSA---VFASGTLTANS-AAP-------SSGVYTVGDFMTTKEELHVV 98 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~~---~~~~~~~~~~~-~~~-------~~~~~~v~~~m~~~~~~~~v 98 (250)
+.++..+.+..++...+.+... .++... +.+. ...+....... ... .....++.++|.. ++..+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~v 80 (122)
T cd04803 3 VVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKT--DVLTV 80 (122)
T ss_pred CEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCC--CCeEe
Confidence 4566778888888887765543 333222 2211 11110000000 000 1245678889987 78999
Q ss_pred CCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 99 KPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 99 ~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
++++++.++ ++.|.+.+...+||++++|+++|+|+..|+.+
T Consensus 81 ~~~~~~~~~-----~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 81 TPDTPLREA-----AEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred CCCCcHHHH-----HHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 999999999 99999999999999998899999999999974
No 136
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=98.12 E-value=9.8e-06 Score=59.35 Aligned_cols=100 Identities=18% Similarity=0.301 Sum_probs=70.5
Q ss_pred cceecCCCChhHHHHHhhhcCC-eeeeeC--CCcc--cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVSALR--RSSA--VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a 107 (250)
++.+..+.+..++...+.+... .++... +.+. .... .+.. ......++.++|.. .+..+.+++++.++
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~-dl~~----~~~~~~~v~~~~~~--~~~~v~~~~~~~~~ 76 (109)
T cd04583 4 PVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLE-SLEQ----AYKEAKSLEDIMLE--DVFTVQPDASLRDV 76 (109)
T ss_pred CEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHH-HHHH----HhhcCCcHhHhhcC--CceEECCCCcHHHH
Confidence 4567778888888888876544 333322 2211 1111 0000 00122467888987 78999999999999
Q ss_pred cchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 108 FVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
++.|.+.+...+||++++|+++|+|+..|+++
T Consensus 77 -----~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 77 -----LGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred -----HHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 99999999999999998899999999999974
No 137
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.12 E-value=1.6e-05 Score=58.67 Aligned_cols=105 Identities=25% Similarity=0.279 Sum_probs=70.6
Q ss_pred cceecCCCChhHHHHHhhhcCC-eeeeeCC-Ccc--cc-cccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVSALRR-SSA--VF-ASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~-~~~--~~-~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a 107 (250)
++.+..+.++.++...+..... .++...+ .+. .. .+...............++.++|.. .+..+.+++++.++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~ 80 (113)
T cd04622 3 VVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTR--GVVTVTEDDDVDEA 80 (113)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHHHHHhhccCCcccCCHHHhccC--CccEECCCCCHHHH
Confidence 4566778888888888765443 3332222 111 10 1100000000112223358899987 78999999999999
Q ss_pred cchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 108 FVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
++.|.+.+...+||++++|+++|+|+..|+.+
T Consensus 81 -----~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 81 -----ARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred -----HHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 99999999999999998899999999999974
No 138
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.12 E-value=9e-06 Score=60.04 Aligned_cols=105 Identities=17% Similarity=0.149 Sum_probs=70.2
Q ss_pred cceecCCCChhHHHHHhhhcCC-eeeeeC-CCcc--cc-cccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVSALR-RSSA--VF-ASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~~--~~-~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a 107 (250)
++.+..+.++.++...+.+... .++... +.+. .. .+...............++.++|.+ ++.++++++++.++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~--~~~~v~~~~~l~~~ 80 (113)
T cd04587 3 PATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVAQGLDPESTLVERVMTP--NPVCATSDTPVLEA 80 (113)
T ss_pred CeEeCCCCCHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCC--CCeEEcCCCCHHHH
Confidence 4456677888888888765543 222211 2211 11 1100000000111112578899987 78899999999999
Q ss_pred cchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 108 FVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
++.|.+++...+||++++|+++|+|+..|++.
T Consensus 81 -----~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 81 -----LHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred -----HHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 99999999999999998899999999999974
No 139
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.11 E-value=1.1e-05 Score=59.60 Aligned_cols=104 Identities=19% Similarity=0.148 Sum_probs=70.5
Q ss_pred cceecCCCChhHHHHHhhhcCC-eeeeeCC-Ccc--cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhccc
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVSALRR-SSA--VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAF 108 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~ 108 (250)
.+++..+.++.++...+.++.. .++...+ ... ...................+++++|.+ +++.+++++++.++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~l~~~- 79 (111)
T cd04589 3 PLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATF--PLITVDPDDFLFNA- 79 (111)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEecCCeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCC--CcEEECCCCcHHHH-
Confidence 3456778888888888866554 3332222 211 111100000000112234568899987 89999999999999
Q ss_pred chhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 109 VPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 109 ~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
++.|.+++...+||+++ |+++|+|+..|+.+
T Consensus 80 ----~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 80 ----LLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred ----HHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 99999999999999985 89999999999975
No 140
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.11 E-value=1.7e-05 Score=58.12 Aligned_cols=100 Identities=24% Similarity=0.268 Sum_probs=67.9
Q ss_pred cceecCCCChhHHHHHhhhcCC-eeeeeC--CCcc--cccccccccCCCCCCCCCceeccccccCCceeEeCC-CCchhc
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVSALR--RSSA--VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKP-TTTVDE 106 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~-~~~v~~ 106 (250)
+..+..+.+..++...+.+... .++... +.+. .... .+.. ......++.++|.. .+..+.+ ++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~-~l~~----~~~~~~~v~~~~~~--~~~~~~~~~~~l~~ 76 (110)
T cd04601 4 PITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNR-DLRF----ETDLDKPVSEVMTP--ENLLTTVEGTSLEE 76 (110)
T ss_pred CeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhh-Heee----cccCCCCHHHhccc--CceEEecCCCCHHH
Confidence 3456677788888877765543 333222 2221 1111 0000 01123578899976 5666666 999999
Q ss_pred ccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 107 AFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 107 a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
+ ++.|.+++...+||++++|+++|+|+..|+++
T Consensus 77 ~-----~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 77 A-----LELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred H-----HHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 9 99999999999999998899999999999974
No 141
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.10 E-value=6e-05 Score=70.55 Aligned_cols=101 Identities=15% Similarity=0.138 Sum_probs=73.8
Q ss_pred cccceecCCCChhHHHHHhhhcCC-eeeeeCCC-c---ccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchh
Q 025613 31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRRS-S---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD 105 (250)
Q Consensus 31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~ 105 (250)
....++..+.++.++...|.++.. ..+...+. + +...+. .......+++++|+. +++++++++++.
T Consensus 96 ~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL-------~~~~~~~~V~dIMt~--~litv~~~~sL~ 166 (475)
T TIGR01303 96 DTPITLAPHDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDL-------LGVDRFTQVRDIMST--DLVTAPADTEPR 166 (475)
T ss_pred cCCeEECCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHh-------hcCCCCCCHHHHccC--CceEeCCCCcHH
Confidence 345567778899999988876654 22221111 0 001110 001122469999998 899999999999
Q ss_pred cccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613 106 EAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 145 (250)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~ 145 (250)
++ ++.|.++++..+||+|++|+++|+|+.+||++.
T Consensus 167 eA-----l~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~ 201 (475)
T TIGR01303 167 KA-----FDLLEHAPRDVAPLVDADGTLAGILTRTGALRA 201 (475)
T ss_pred HH-----HHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHH
Confidence 99 999999999999999988999999999999975
No 142
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.10 E-value=1.5e-05 Score=58.24 Aligned_cols=98 Identities=16% Similarity=0.271 Sum_probs=68.3
Q ss_pred cceecCCCChhHHHHHhhhcCC-eeeeeC-CCc---ccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVSALR-RSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a 107 (250)
++.+..+.+..++...+..... .++... +.+ +...+. . ......+++++|.+ .+..+.+++++.++
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l--~-----~~~~~~~~~~~~~~--~~~~v~~~~~l~~~ 74 (107)
T cd04610 4 VITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDL--L-----GKDPDETVEEIMSK--DLVVAVPEMDIMDA 74 (107)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHh--h-----ccCccccHHHhCCC--CCeEECCCCCHHHH
Confidence 4456677788888877754432 232222 211 111110 0 01123468899987 78899999999999
Q ss_pred cchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 108 FVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
++.|.+++...+||++++|+++|+|+..|+++
T Consensus 75 -----~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 75 -----ARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred -----HHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 99999999999999998899999999999974
No 143
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.10 E-value=7.9e-06 Score=60.21 Aligned_cols=101 Identities=24% Similarity=0.305 Sum_probs=71.0
Q ss_pred cceecCCCChhHHHHHhhhcCC-eeeeeC-CCcc---cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVSALR-RSSA---VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a 107 (250)
++++..+.+..++...+..... .++... +.+. ...+..... .......++.++|.. ++..+.+++++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~~~~---~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~ 78 (110)
T cd04595 4 VKTVRPEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVEKAL---RHGLGHAPVKDYMST--DVVTVPPDTPLSEV 78 (110)
T ss_pred ceEeCCCCcHHHHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHHHHH---hcccccCcHHHHhcC--CCEEECCCCcHHHH
Confidence 4567778888888888765443 333222 2221 111110000 111145678899987 88999999999999
Q ss_pred cchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 108 FVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
++.|.+++...+||++ +|+++|+|+..|+.+
T Consensus 79 -----~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 79 -----QELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred -----HHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 9999999999999999 789999999999974
No 144
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.10 E-value=1.3e-05 Score=60.75 Aligned_cols=51 Identities=22% Similarity=0.420 Sum_probs=46.3
Q ss_pred cccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 87 DFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 87 ~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
+.|.. ++..+++++++.++ ++.|.+++...+||+|++|+++|+||..|+++
T Consensus 75 ~~~~~--~~~~v~~~~~l~~a-----~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 75 GVKSR--PLITCTPSSTLKEV-----ITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred ccccC--CCeEECCCCcHHHH-----HHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 45656 78999999999999 99999999999999998899999999999974
No 145
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.08 E-value=1.1e-05 Score=59.54 Aligned_cols=102 Identities=25% Similarity=0.301 Sum_probs=70.0
Q ss_pred cceecCCCChhHHHHHhhhcCC-eeeeeC--CCcc--cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVSALR--RSSA--VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a 107 (250)
++.+..+.++.++...+.+... .++... +.+. .......... ........++.++|.. ++..+.+++++.++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~-~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~ 79 (111)
T cd04626 3 FPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLD-LFESFLEKKVFNIVSQ--DVFYVNEEDTIDEA 79 (111)
T ss_pred ceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHH-hhcccccCcHHHHhcC--CcEEEcCCCcHHHH
Confidence 4556778888888888866553 334332 2211 1111000000 0111123468888987 88999999999999
Q ss_pred cchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHH
Q 025613 108 FVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143 (250)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~ 143 (250)
++.|.+++...+||+++ |+++|+|+..|+.
T Consensus 80 -----~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~ 109 (111)
T cd04626 80 -----LDIMREKQIGRLPVVDD-NKLIGVVRTKDIL 109 (111)
T ss_pred -----HHHHHHcCCCeeeEeEC-CEEEEEEEhHHhc
Confidence 99999999999999997 8999999999987
No 146
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=98.08 E-value=1.9e-05 Score=60.10 Aligned_cols=51 Identities=37% Similarity=0.625 Sum_probs=46.5
Q ss_pred CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 190 PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 190 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
++++++++++++.++++.|.+.+...+||+|++|+++|+|+.+|++..+.+
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~ 52 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSS 52 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHH
Confidence 468899999999999999999999999999988999999999999986654
No 147
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=98.08 E-value=8.9e-06 Score=72.51 Aligned_cols=60 Identities=25% Similarity=0.222 Sum_probs=53.0
Q ss_pred CCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613 180 NGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 239 (250)
Q Consensus 180 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~ 239 (250)
...++.++|.+ +++++++++++.+|++.|.+.+...+||+|++|+++|+||..|+.+.+.
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~ 261 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFD 261 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHh
Confidence 34568999987 8999999999999999999999888888898899999999999987554
No 148
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.08 E-value=1.8e-05 Score=71.98 Aligned_cols=121 Identities=25% Similarity=0.369 Sum_probs=94.8
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEe-CCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHH
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEV 172 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd-~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (250)
.+..+.+..++.++ ...+.+++++.+||.| +.|.+..++|.+-+++++...+.. .| +
T Consensus 163 ~~~~i~p~~s~l~~-----~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~------------~~--~--- 220 (381)
T KOG1764|consen 163 PFVSISPESSLLDA-----VLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRL------------LP--L--- 220 (381)
T ss_pred CceeecCcHHHHHH-----HHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcc------------cc--c---
Confidence 34788889999999 9999999999999999 458999999999999886544421 00 0
Q ss_pred HHHHhccCCCccccc---ccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 173 QKLLSKTNGKMVGDL---MTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 173 ~~~~~~~~~~~v~~i---m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
......++.++ +..+...+..++++.+|+++|.+.++..+|||+++|+.+|++++.|+.....+
T Consensus 221 ----~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~ 287 (381)
T KOG1764|consen 221 ----PSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLARE 287 (381)
T ss_pred ----HHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhc
Confidence 01112222222 12358889999999999999999999999999999999999999999887654
No 149
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=98.07 E-value=2.2e-05 Score=57.32 Aligned_cols=98 Identities=13% Similarity=0.142 Sum_probs=68.2
Q ss_pred cceecCCCChhHHHHHhhhcCC-eeeee--CCCcc--cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVSAL--RRSSA--VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a 107 (250)
++.+..+.+..+++..+.+... .++.. .+.+. .... .+. .....+++++|.+ .+..+.+++++.++
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~-dl~------~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 73 (106)
T cd04582 3 PITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRR-EAA------RASGGCCGDHAEP--FKVTVSVDDDLRIV 73 (106)
T ss_pred CcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHH-HHH------Hhcccchhhhccc--CCEEECCCCCHHHH
Confidence 4456677788888877765543 33322 22221 1110 000 0011247888987 67889999999999
Q ss_pred cchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 108 FVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
++.|.+++...+||+|++|+++|+|+.+++.+
T Consensus 74 -----~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 74 -----LSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred -----HHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 99999999999999998899999999999974
No 150
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=98.07 E-value=1.5e-05 Score=58.75 Aligned_cols=103 Identities=22% Similarity=0.189 Sum_probs=70.4
Q ss_pred cceecCCCChhHHHHHhhhcCC-eeeeeC-CCcc---cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVSALR-RSSA---VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a 107 (250)
++++..+.++.++...+.+... .++... +.+. ...+...... ........++.++|.. +++.+++++++.++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~-~~~~~~~~~i~~~~~~--~~~~v~~~~~l~~~ 79 (111)
T cd04800 3 PVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVV-AEGLDPDTPVSEVMTA--PPITIPPDATVFEA 79 (111)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHh-ccCCCccCCHHHHhCC--CCeEECCCCcHHHH
Confidence 4556778888888887765543 333222 2211 1111000000 0112223578899987 89999999999999
Q ss_pred cchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 108 FVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
++.|.+++...+||+++ |+++|+++..|+.+
T Consensus 80 -----~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 80 -----LLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred -----HHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 99999999999999997 89999999999974
No 151
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.06 E-value=8.3e-06 Score=61.55 Aligned_cols=51 Identities=20% Similarity=0.302 Sum_probs=46.6
Q ss_pred ccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHH
Q 025613 86 GDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143 (250)
Q Consensus 86 ~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~ 143 (250)
.++|.. ++.++++++++.++ ++.|.+++.+.+||+|++|+++|+||.+|+.
T Consensus 71 ~~~~~~--~~~~v~~~~~l~~a-----~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 71 LTIGTS--DVISINGDQPLIDA-----LHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred cccCcC--CceEeCCCCCHHHH-----HHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 346766 78999999999999 9999999999999999889999999999986
No 152
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.05 E-value=7.2e-06 Score=61.18 Aligned_cols=56 Identities=39% Similarity=0.748 Sum_probs=51.2
Q ss_pred CceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 82 VYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 82 ~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
..++.++|.+ +..++++++++.++ ++.|.+++...+||++++|+++|+|+..|+++
T Consensus 66 ~~~~~~~~~~--~~~~v~~~~~l~~~-----~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 66 KIKVSDIMTR--DPITVSPDASVEEA-----AELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred ccCHHHhccC--CCeEeCCCCcHHHH-----HHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 4568889987 89999999999999 99999999999999998899999999999974
No 153
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.05 E-value=1.7e-05 Score=58.26 Aligned_cols=103 Identities=25% Similarity=0.336 Sum_probs=69.5
Q ss_pred ceecCCCChhHHHHHhhhcCC-eeeeeC-CCcc--cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcccc
Q 025613 34 PCLLLSRPGCRVFSVLATSSD-RVSALR-RSSA--VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFV 109 (250)
Q Consensus 34 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~ 109 (250)
..+..+.+..++.+.+.+... .++..+ +.++ .... .+............++.++|.. ++..+.+++++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~-dl~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~-- 78 (111)
T cd04612 4 VTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLA-DIRRVPAEGREATVLVGDVMTR--DPVTASPDETLRDA-- 78 (111)
T ss_pred EEeCCCCcHHHHHHHHHHcCCCcceEeeCCeEEEEEEHH-HHHHHHhcCcccccCHHHhccC--CCeEECCCCCHHHH--
Confidence 456678888888888765543 332222 2211 1111 0000000111112367788887 89999999999999
Q ss_pred hhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 110 PTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 110 ~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
++.|.+++...+||++++|+++|+|+..|+.+
T Consensus 79 ---~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 79 ---LKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred ---HHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 99999999999999998899999999999974
No 154
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.05 E-value=2.3e-05 Score=57.84 Aligned_cols=50 Identities=34% Similarity=0.522 Sum_probs=45.4
Q ss_pred CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 191 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 191 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
++.++++++++.++++.|.+.+...+||+|++|+++|+|+..|+++.+.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~ 51 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAA 51 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhc
Confidence 57789999999999999999999999999988999999999999887644
No 155
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.03 E-value=2.1e-05 Score=58.26 Aligned_cols=50 Identities=28% Similarity=0.456 Sum_probs=45.7
Q ss_pred CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 191 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 191 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
+++++++++++.++++.|.+.+.+.+||+|++|+++|+++.+|+++.+.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~ 51 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKG 51 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhc
Confidence 46789999999999999999999999999988999999999999987653
No 156
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=98.03 E-value=3.5e-05 Score=70.97 Aligned_cols=141 Identities=13% Similarity=0.139 Sum_probs=96.5
Q ss_pred ccceecCCCChhHHHHHhhhcCC-eeeeeCCCc------ccccccccccCCCCCCCCCceeccccccCCceeEeCCCCch
Q 025613 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS------AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV 104 (250)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v 104 (250)
.+.++..+.+..++...+.+..+ ++|..++.. .+..+... .. .. ....++++|++ +..+++++++
T Consensus 202 ~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~-~~--~~--~~~~l~~~~~~---~~~Vpe~~~l 273 (408)
T TIGR03520 202 DIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLP-HL--NK--KNFDWQSLLRE---PYFVPENKKL 273 (408)
T ss_pred hEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHh-Hh--cc--CCCCHHHHcCC---CeEeCCCCcH
Confidence 46678889999999999887777 888877642 12222110 00 00 23456788876 7899999999
Q ss_pred hcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHHHHhccCCCcc
Q 025613 105 DEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMV 184 (250)
Q Consensus 105 ~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 184 (250)
.++ ++.|++++.+.++|+|+.|..+|+||.+|+++.+. |. ..+++ ......+
T Consensus 274 ~~l-----l~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeiv--ge----------i~de~-----------d~~~~~i 325 (408)
T TIGR03520 274 DDL-----LRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIV--GD----------ISDEF-----------DDEDLIY 325 (408)
T ss_pred HHH-----HHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHh--CC----------CCCcC-----------CcCccce
Confidence 999 99999999999999999899999999999998642 21 00000 0001111
Q ss_pred cccccCCCeEecCCCCHHHHHHHHH
Q 025613 185 GDLMTPAPVVVRETTNLEDAARLLL 209 (250)
Q Consensus 185 ~~im~~~~~~v~~~~~l~~a~~~m~ 209 (250)
.. .......++..+++.++.+.|.
T Consensus 326 ~~-~~~~~~~v~G~~~l~~l~~~l~ 349 (408)
T TIGR03520 326 SK-IDDNNYVFEGKTSLKDFYKILK 349 (408)
T ss_pred EE-eCCCeEEEEeccCHHHHHHHhC
Confidence 11 1344577888999999888773
No 157
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.02 E-value=1.3e-05 Score=60.00 Aligned_cols=104 Identities=22% Similarity=0.302 Sum_probs=70.2
Q ss_pred cceecCCCChhHHHHHhhhcCC-eeeeeC-CCcc---cccccccccCC-C--------CCCCCCceeccccccCCceeEe
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVSALR-RSSA---VFASGTLTANS-A--------APSSGVYTVGDFMTTKEELHVV 98 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~~---~~~~~~~~~~~-~--------~~~~~~~~v~~~m~~~~~~~~v 98 (250)
++++..+.+..++...+.+... .++... +.+. ...+....... . .......++.++|.. +...+
T Consensus 3 ~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v 80 (121)
T cd04633 3 VITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTR--PVITI 80 (121)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeeEEEECCEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccC--CceEE
Confidence 4466778888888887765443 333222 2211 11110000000 0 012234578888987 89999
Q ss_pred CCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 99 KPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 99 ~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
++++++.++ ++.|.+.+...+||+++ |+++|+|+..|+.+
T Consensus 81 ~~~~~l~~~-----~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 81 EPDTSVSDV-----ASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred CCCCcHHHH-----HHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 999999999 99999999999999997 89999999999974
No 158
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.00 E-value=9e-06 Score=61.25 Aligned_cols=56 Identities=41% Similarity=0.723 Sum_probs=50.8
Q ss_pred CceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 82 VYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 82 ~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
..++.++|.+ +++++++++++.++ ++.|.+.+...+||++++|+++|+|+..|+++
T Consensus 69 ~~~~~~~~~~--~~~~v~~~~~l~~~-----~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTR--NVITITPDDSIKDA-----AELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcC--CceEeCCCCcHHHH-----HHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 3468888887 89999999999999 99999999999999998799999999999975
No 159
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.99 E-value=2.8e-05 Score=57.37 Aligned_cols=103 Identities=20% Similarity=0.320 Sum_probs=68.8
Q ss_pred ceecCCCChhHHHHHhhhcCC-eeeeeCCCcc----cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhccc
Q 025613 34 PCLLLSRPGCRVFSVLATSSD-RVSALRRSSA----VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAF 108 (250)
Q Consensus 34 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~ 108 (250)
..+..+.+..++...+..+.. .++...+.-+ ...+...............++.++|.+ ++..+++++++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~- 80 (112)
T cd04802 4 ITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRNLKPREVPVGEVMST--PLITIDPNASLNEA- 80 (112)
T ss_pred EEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCC--CcEEECCCCCHHHH-
Confidence 345677888888888876553 3332222110 101100000000111234578899987 78999999999999
Q ss_pred chhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 109 VPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 109 ~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
++.|.+++...+||++++ +++|+|+..|+.+
T Consensus 81 ----~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 81 ----AKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred ----HHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 999999999999999865 9999999999973
No 160
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.97 E-value=3.7e-05 Score=58.32 Aligned_cols=49 Identities=41% Similarity=0.632 Sum_probs=44.7
Q ss_pred CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613 191 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 239 (250)
Q Consensus 191 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~ 239 (250)
++.++.+++++.++++.|.+.+...+||+|++|+++|+||..|+++.+.
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~ 50 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVV 50 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHh
Confidence 4678999999999999999999999999998899999999999997653
No 161
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.96 E-value=1.1e-05 Score=60.41 Aligned_cols=57 Identities=32% Similarity=0.538 Sum_probs=51.2
Q ss_pred CCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 81 GVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 81 ~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
...++.++|.. ++..+.+++++.++ ++.|.+++...+||++++|+++|+++..|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~~~-----~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMST--PVYSVTPDDSIATA-----VELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcC--CCeeECCCCCHHHH-----HHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 34567888877 78999999999999 99999999999999998899999999999974
No 162
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.96 E-value=1.3e-05 Score=59.24 Aligned_cols=104 Identities=18% Similarity=0.186 Sum_probs=68.3
Q ss_pred cceecCCCChhHHHHHhhhcCC-eee-eeCCCcc--cc-cccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVS-ALRRSSA--VF-ASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~-~~~~~~~--~~-~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a 107 (250)
++.+..+.++.++.+.+.+... ... ...+.+. .. .+...............++.++|.. ++.++++++++.++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a 80 (112)
T cd04625 3 IYTVAPETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNP--EPIVASPDDSIDEV 80 (112)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCC--CCeEECCCCCHHHH
Confidence 3456677788888877754443 222 2222211 11 1100000000011223578899987 78899999999999
Q ss_pred cchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 108 FVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
++.|.+++...+||++ +|+++|+||.+|+.+
T Consensus 81 -----~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 81 -----RRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred -----HHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 9999999999999998 589999999999974
No 163
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.96 E-value=3e-05 Score=73.06 Aligned_cols=108 Identities=17% Similarity=0.171 Sum_probs=79.4
Q ss_pred cccccceecCCCChhHHHHHhhhcCC-eeeeeCC-----Cc--ccc-cccccccCCCCCCCCCceeccccccCCceeEeC
Q 025613 29 FALQLPCLLLSRPGCRVFSVLATSSD-RVSALRR-----SS--AVF-ASGTLTANSAAPSSGVYTVGDFMTTKEELHVVK 99 (250)
Q Consensus 29 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~-----~~--~~~-~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~ 99 (250)
+...++.+..+.++.++...+.++.. .++...+ .. ... .+. .. . .....++.++|++.+.+++++
T Consensus 106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL--~~---v-~~~~~~V~eIMt~~~~lvtv~ 179 (505)
T PLN02274 106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDW--DF---V-NDRETKLSEVMTSDDDLVTAP 179 (505)
T ss_pred ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHH--hh---c-cccCCcHHHHhccCCCcEEEC
Confidence 45567788889999999988877665 3333321 10 011 110 00 0 123567999999833488999
Q ss_pred CCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhh
Q 025613 100 PTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 147 (250)
Q Consensus 100 ~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~ 147 (250)
+++++.++ ++.|.++++..+||+|++|+++|+||..|+.+...
T Consensus 180 ~~~sL~eA-----l~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~ 222 (505)
T PLN02274 180 AGIDLEEA-----EAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKG 222 (505)
T ss_pred CCCCHHHH-----HHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence 99999999 99999999999999998999999999999998754
No 164
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=97.95 E-value=2.3e-05 Score=57.81 Aligned_cols=93 Identities=19% Similarity=0.277 Sum_probs=64.2
Q ss_pred cceecCCCChhHHHHHhhhcCC-eeeeeCCCcccccccccccCCCCCCCCCceecc-------ccccCCceeEeCCCCch
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAAPSSGVYTVGD-------FMTTKEELHVVKPTTTV 104 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------~m~~~~~~~~v~~~~~v 104 (250)
++++..+.++.++...+.+... .++...... . + ....+.++.++ +|.. ++.++++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~--~--------~~~~G~v~~~dl~~~~~~~m~~--~~~~v~~~~~l 70 (105)
T cd04591 4 VVLLPEGMTVEDLESLLSTTSHNGFPVVDSTE-E--S--------PRLVGYILRSQLVVALKNYIDP--SPFTVSPRTSL 70 (105)
T ss_pred eEEecccccHHHHHHHHHhCCCCCcceEcCCC-C--C--------CEEEEEEeHHHHHHHHHHhccC--CCceECCCCcH
Confidence 5567788888888887765532 222222100 0 0 00111112122 7877 78899999999
Q ss_pred hcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 105 DEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 105 ~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
.++ ++.|.+++...+||++ +|+++|+|+.+|+.+
T Consensus 71 ~~~-----~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 71 EKV-----HQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred HHH-----HHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 999 9999999999999995 689999999999974
No 165
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.95 E-value=3.1e-05 Score=70.55 Aligned_cols=113 Identities=21% Similarity=0.228 Sum_probs=80.2
Q ss_pred CCCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCC
Q 025613 77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN 156 (250)
Q Consensus 77 ~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~ 156 (250)
......++++++|.+ ...+...... .+ ++. .+...+.|+|. |+++..+...+..
T Consensus 268 ~~~~~~l~a~~~m~~---~~~~~~~~~~-~~-----~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~--------- 321 (382)
T TIGR03415 268 TNPLNVLTARSLMRP---LTDLEHVDGG-WC-----VSD---RRDTWLFTIDK-----QVRRRDAKLPVQA--------- 321 (382)
T ss_pred cCcccceeHHHHhcc---cccccccCcc-hh-----hhh---cccceeEeecc-----ceecccchHhHhh---------
Confidence 345667788899965 3333222222 34 433 67778888885 8888877664311
Q ss_pred CCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 157 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
......+.+ +..+..++++++++.+++..+.+.+. .++|+|+ |+++|+|++.+++.
T Consensus 322 ---------------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~ 377 (382)
T TIGR03415 322 ---------------------WAAEQEVES-LEAAPTVINPDTLMRDVLAARHRTGG-AILLVEN-GRIVGVIGDDNIYH 377 (382)
T ss_pred ---------------------cccccchhh-hcccCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHH
Confidence 012234666 56668899999999999999988887 4889985 99999999999999
Q ss_pred HHH
Q 025613 237 AAL 239 (250)
Q Consensus 237 ~l~ 239 (250)
++.
T Consensus 378 ~~~ 380 (382)
T TIGR03415 378 ALL 380 (382)
T ss_pred HHh
Confidence 875
No 166
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=97.93 E-value=2.8e-05 Score=72.37 Aligned_cols=62 Identities=35% Similarity=0.538 Sum_probs=56.2
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 179 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 179 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
....++.++|.+++.++.+++++.++++.|.+.+...+||+|++|+++|+||.+|+++.+..
T Consensus 332 l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~ 393 (454)
T TIGR01137 332 LKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFA 393 (454)
T ss_pred hccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhc
Confidence 45678999999999999999999999999999999999999988999999999999986643
No 167
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=97.93 E-value=2.6e-05 Score=58.30 Aligned_cols=104 Identities=20% Similarity=0.254 Sum_probs=70.2
Q ss_pred cceecCCCChhHHHHHhhhcCC-eeeeeC--CCcc---ccccccccc-CCC--C-----CCCCCceeccccccCCceeEe
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVSALR--RSSA---VFASGTLTA-NSA--A-----PSSGVYTVGDFMTTKEELHVV 98 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~~---~~~~~~~~~-~~~--~-----~~~~~~~v~~~m~~~~~~~~v 98 (250)
++++..+.++.++...+..... .++... +.+. ...+..... ... . ......++.++|.. .+.++
T Consensus 3 ~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~i 80 (121)
T cd04584 3 VVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTK--DVITV 80 (121)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhC--CCeEE
Confidence 4566778888888887765543 333222 2211 111100000 000 0 02334568889987 78999
Q ss_pred CCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 99 KPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 99 ~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
++++++.++ ++.|.+++...+||+++ |+++|+|+..|+.+
T Consensus 81 ~~~~~l~~~-----~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 81 HPLDTVEEA-----ALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred CCCCcHHHH-----HHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 999999999 99999999999999987 89999999999974
No 168
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.93 E-value=1.9e-05 Score=61.16 Aligned_cols=55 Identities=31% Similarity=0.583 Sum_probs=50.2
Q ss_pred CceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 82 VYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 82 ~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
..+++++|.+ ++..+.+++++.++ ++.|.++++..+||+++ |+++|+|+..|+.+
T Consensus 80 ~~~v~~~~~~--~~~~v~~~~~l~~~-----~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 80 PLVAEDIMTE--EIITVSPNDDVVDA-----AKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred cccHHHhcCC--CCeEECCCCCHHHH-----HHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 4578899987 78899999999999 99999999999999997 89999999999974
No 169
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.90 E-value=1.5e-05 Score=58.97 Aligned_cols=55 Identities=38% Similarity=0.607 Sum_probs=49.9
Q ss_pred CceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 82 VYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 82 ~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
..++.++|.. ++..+.+++++.++ ++.|.+++...+||+|+ |+++|+|+..|+.+
T Consensus 59 ~~~v~~~~~~--~~~~v~~~~~l~~~-----~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 59 VATVRDIMTT--EVLTVSPDDSIVDL-----AQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred CccHHHHhcc--CceEECCCCcHHHH-----HHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 4568889987 78899999999999 99999999999999997 89999999999974
No 170
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.89 E-value=1.3e-05 Score=61.49 Aligned_cols=55 Identities=38% Similarity=0.498 Sum_probs=50.5
Q ss_pred CceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 82 VYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 82 ~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
..++.++|.+ ++..+.+++++.++ ++.|.+.+.+.+||+| +|+++|+|+..|+.+
T Consensus 80 ~~~v~~~~~~--~~~~v~~~~~~~~~-----~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 80 GRKVADVMTR--PVVTVGEDTPLAEV-----AELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred CCCHHHHhCC--CceEeCCCCcHHHH-----HHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 4578899987 89999999999999 9999999999999999 899999999999874
No 171
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=97.89 E-value=1.7e-05 Score=59.00 Aligned_cols=100 Identities=22% Similarity=0.238 Sum_probs=67.0
Q ss_pred cceecCCCChhHHHHHhhhcCC-eeeeeC-----CCcc--cccccccccCCCCCCCCCceeccccccCCceeEeCC--CC
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVSALR-----RSSA--VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKP--TT 102 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~--~~ 102 (250)
..++..+.+..++...+.+... ..+... +.+. .... .+... .....+++++|.. ....+.. ++
T Consensus 4 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~-dl~~~----~~~~~~v~~~~~~--~~~~~~~~~~~ 76 (114)
T cd04602 4 PSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSR-DIDFL----TDSETPLSEVMTP--REVLVVAPTGI 76 (114)
T ss_pred CeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhH-Hhhhh----hccCCCHHHhcCC--CceEEECCCCC
Confidence 3456678888888888765543 222222 1111 1111 00000 0112458899987 5666655 99
Q ss_pred chhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 103 TVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 103 ~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
++.++ ++.|.+++...+||++++|+++|+|+..|+.+
T Consensus 77 ~l~~~-----l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 77 TLEEA-----NEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred CHHHH-----HHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 99999 99999999999999998899999999999873
No 172
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.88 E-value=2.1e-05 Score=60.15 Aligned_cols=53 Identities=36% Similarity=0.605 Sum_probs=49.0
Q ss_pred eeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 84 ~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
++.++|.+ +++.+.+++++.++ ++.|.+.+...+||+++ |+++|+|+..|+++
T Consensus 79 ~v~~~~~~--~~~~v~~~~~l~~~-----~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 79 KVEEIMTK--KVITVDEDTTIEDV-----ARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred CHHHhccC--CceEECCCCcHHHH-----HHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 68888987 78999999999999 99999999999999997 99999999999974
No 173
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=97.88 E-value=6.2e-05 Score=55.36 Aligned_cols=50 Identities=26% Similarity=0.490 Sum_probs=45.5
Q ss_pred CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHHHHHHHh
Q 025613 191 APVVVRETTNLEDAARLLLETKYRRLPVVDAD-GKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 191 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~-g~~vGiIt~~Dil~~l~~ 240 (250)
++.++++++++.+|++.|.+.+...+||++++ |+++|+++..|+++...+
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~ 52 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAE 52 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHc
Confidence 46789999999999999999999999999987 999999999999987654
No 174
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=97.88 E-value=2.5e-05 Score=67.52 Aligned_cols=58 Identities=33% Similarity=0.436 Sum_probs=53.3
Q ss_pred CcccccccCC-CeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613 182 KMVGDLMTPA-PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 239 (250)
Q Consensus 182 ~~v~~im~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~ 239 (250)
.+++++|.++ ++++.+++++.++++.|.+.+.+.+||+|++|+++|+|+..|+.+.+.
T Consensus 155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~ 213 (268)
T TIGR00393 155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALL 213 (268)
T ss_pred hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHh
Confidence 5788999888 899999999999999999999999999998899999999999988654
No 175
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=97.88 E-value=2.3e-05 Score=57.63 Aligned_cols=100 Identities=16% Similarity=0.189 Sum_probs=67.2
Q ss_pred eecCCCChhHHHHHhhhcCC-eeeeeC-CCcc---cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcccc
Q 025613 35 CLLLSRPGCRVFSVLATSSD-RVSALR-RSSA---VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFV 109 (250)
Q Consensus 35 ~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~ 109 (250)
.+..+.+..++...+.+... .++... +.+. ...+... .. .......++.++|.. ++..+++++++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~~l~~-~~--~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~-- 77 (110)
T cd04588 5 TLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIAH-AI--ARGLELAKVKDVMTK--DVITIDEDEQLYDA-- 77 (110)
T ss_pred EECCCCCHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHH-HH--hccccccCHHHHhcC--CceEECCCCCHHHH--
Confidence 35566777888777765543 333222 2111 1111100 00 011122567888877 78999999999999
Q ss_pred hhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 110 PTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 110 ~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
++.|.+.+...+||++++|+++|+|+..|+.+
T Consensus 78 ---~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 78 ---IRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred ---HHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 99999999999999998899999999999973
No 176
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.87 E-value=2.9e-05 Score=68.12 Aligned_cols=117 Identities=27% Similarity=0.319 Sum_probs=89.0
Q ss_pred CCCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCC
Q 025613 77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN 156 (250)
Q Consensus 77 ~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~ 156 (250)
......++++++|.+......-.+...-..+ +..+.......+.+++..++.+|+|+..++...
T Consensus 268 v~~~~VltA~~IM~~~~~~~~~~~~~~~~~a-----l~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~----------- 331 (386)
T COG4175 268 VDRSRVLTAKDIMRRPDLLIRKTPGDGPRVA-----LKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKA----------- 331 (386)
T ss_pred CChhheeeHHHhhcccccccccccccccchh-----hhhhhhccchhhHHHhccCceeeEEeccchhcc-----------
Confidence 4566777899999852122222233334455 777777776667777777889999999988731
Q ss_pred CCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 157 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
.+.+.+.++..++++.+.+....+.+. .++|+|++|+++|+|++..+++
T Consensus 332 ------------------------------~~~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~ 380 (386)
T COG4175 332 ------------------------------ALIDDVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLE 380 (386)
T ss_pred ------------------------------cccccccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHH
Confidence 356668889999999999999988887 5789999999999999999999
Q ss_pred HHHh
Q 025613 237 AALQ 240 (250)
Q Consensus 237 ~l~~ 240 (250)
++..
T Consensus 381 aL~~ 384 (386)
T COG4175 381 ALAR 384 (386)
T ss_pred HHhc
Confidence 8864
No 177
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.86 E-value=0.0002 Score=67.46 Aligned_cols=104 Identities=22% Similarity=0.223 Sum_probs=76.4
Q ss_pred cccceecCCCChhHHHHHhhhcCC-eeeeeCC----Cc----ccccccccccCCCCCCCCCceeccccccCCceeEeCCC
Q 025613 31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRR----SS----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPT 101 (250)
Q Consensus 31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~ 101 (250)
..+.++..+.++.++...+.++.. .++...+ .. +...+.. .. .....+++++|++..++++++++
T Consensus 104 ~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~-----~~-~~~~~~V~diMt~~~~lvtv~~~ 177 (495)
T PTZ00314 104 MDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDID-----FV-KDKSTPVSEVMTPREKLVVGNTP 177 (495)
T ss_pred cCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHh-----hc-ccCCCCHHHhhCCcCCceEeCCC
Confidence 345577888999999988877664 4443322 10 0111100 00 11245799999865578999999
Q ss_pred CchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613 102 TTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 145 (250)
Q Consensus 102 ~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~ 145 (250)
.++.++ ++.|.+++...+||+|++++++|+||.+||.+.
T Consensus 178 ~sl~eA-----l~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~ 216 (495)
T PTZ00314 178 ISLEEA-----NEVLRESRKGKLPIVNDNGELVALVSRSDLKKN 216 (495)
T ss_pred CCHHHH-----HHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhc
Confidence 999999 999999999999999999999999999999975
No 178
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.84 E-value=5.8e-05 Score=55.90 Aligned_cols=104 Identities=26% Similarity=0.337 Sum_probs=74.0
Q ss_pred cccceecCCCChhHHHHHhhhcCC-eeeeeCCC-c---ccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchh
Q 025613 31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRRS-S---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD 105 (250)
Q Consensus 31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~ 105 (250)
..++++..+.+..++...|.++.. .++...+. . +...+.... . ........++.++|.. ++.++.++.++.
T Consensus 7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~~~-~-~~~~~~~~~v~~v~~~--~~~~~~~~~~~~ 82 (117)
T COG0517 7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDILRA-L-AAGGKRLLPVKEVMTK--PVVTVDPDTPLE 82 (117)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHH-H-hccCCccccHHHhccC--CcEEECCCCCHH
Confidence 446778889999999999988885 44444332 1 111111000 0 0111111168899997 789999999999
Q ss_pred cccchhHHHHHHH-cCCCeeEEEeCCC-cEEEEEehHHHH
Q 025613 106 EAFVPTALEILVE-KRITGFPVIDDDW-KLVGLVSDYDLL 143 (250)
Q Consensus 106 ~a~~~~~~~~~~~-~~~~~~~Vvd~~g-~~~GiVt~~dL~ 143 (250)
++ .+.|.+ +++..+||+++++ +++|+++..|+.
T Consensus 83 ~~-----~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 83 EA-----LELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred HH-----HHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 99 999999 6999999999886 999999999873
No 179
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.82 E-value=2.8e-05 Score=58.33 Aligned_cols=55 Identities=36% Similarity=0.582 Sum_probs=50.2
Q ss_pred ceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 83 YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 83 ~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
.+++++|.. +++.+++++++.++ ++.|.+++...+||++++|+++|+++..|+++
T Consensus 67 ~~~~~~~~~--~~~~v~~~~~l~~~-----~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTR--DPITVSPDTPVDEA-----SKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcC--CCeeeCCCCcHHHH-----HHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 357888887 89999999999999 99999999999999998899999999999974
No 180
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.82 E-value=7.1e-05 Score=56.76 Aligned_cols=46 Identities=30% Similarity=0.595 Sum_probs=42.7
Q ss_pred CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 191 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 191 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
++.++..++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~ 47 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLG 47 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhh
Confidence 4678999999999999999999999999998899999999999986
No 181
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=97.81 E-value=0.00043 Score=64.58 Aligned_cols=101 Identities=21% Similarity=0.270 Sum_probs=75.7
Q ss_pred ccceecCCCChhHHHHHhhhcCC-eeeeeCCCc--------ccccccccccCCCCCCCCCceeccccc-cCCceeEeCCC
Q 025613 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS--------AVFASGTLTANSAAPSSGVYTVGDFMT-TKEELHVVKPT 101 (250)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~v~~~m~-~~~~~~~v~~~ 101 (250)
.+.++..+.++.++...+.++.. .++...+.. +...+.. . . .....+++++|+ . ++++++++
T Consensus 89 ~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~--~---~-~~~~~~V~dvm~~~--~~~~V~~~ 160 (450)
T TIGR01302 89 DPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIR--F---V-KDKGKPVSEVMTRE--EVITVPEG 160 (450)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHh--h---h-hcCCCCHHHhhCCC--CCEEECCC
Confidence 46678889999999998877654 444443220 1111100 0 0 112457889998 4 68999999
Q ss_pred CchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613 102 TTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 145 (250)
Q Consensus 102 ~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~ 145 (250)
+++.++ ++.|.+++...+||+|++|+++|+||.+|+++.
T Consensus 161 ~sl~ea-----l~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~ 199 (450)
T TIGR01302 161 IDLEEA-----LKVLHEHRIEKLPVVDKNGELVGLITMKDIVKR 199 (450)
T ss_pred CcHHHH-----HHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhc
Confidence 999999 999999999999999999999999999999975
No 182
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.81 E-value=4.9e-05 Score=46.51 Aligned_cols=46 Identities=41% Similarity=0.710 Sum_probs=41.5
Q ss_pred eeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613 95 LHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 145 (250)
Q Consensus 95 ~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~ 145 (250)
++++.+++++.++ ++.|.+.++..+||++++++++|+++..++.+.
T Consensus 2 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLEEA-----LELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHHHH-----HHHHHHhCCCcccEECCCCeEEEEEEHHHHHHh
Confidence 4678899999999 999999999999999988899999999999864
No 183
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=97.81 E-value=0.00012 Score=53.12 Aligned_cols=51 Identities=41% Similarity=0.612 Sum_probs=46.1
Q ss_pred CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhh
Q 025613 191 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 241 (250)
Q Consensus 191 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~ 241 (250)
+++++..++++.++.+.|.+.+...+||++++++++|+++..|++..+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~ 52 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEG 52 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhc
Confidence 467899999999999999998889999999889999999999999887653
No 184
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=97.80 E-value=4e-05 Score=73.56 Aligned_cols=60 Identities=30% Similarity=0.484 Sum_probs=55.0
Q ss_pred CCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613 180 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 239 (250)
Q Consensus 180 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~ 239 (250)
...+++++|++++.++++++++.++++.|.+.+.+.+||+|++|+++|+||.+|+.+.+.
T Consensus 445 ~~~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~ 504 (574)
T PRK01862 445 RTTQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLL 504 (574)
T ss_pred hhCcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhh
Confidence 457899999999999999999999999999999999999998899999999999988653
No 185
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=97.79 E-value=3.8e-05 Score=56.17 Aligned_cols=94 Identities=18% Similarity=0.256 Sum_probs=64.9
Q ss_pred ecCCCChhHHHHHhhhcCC-eeeeeC-CCcc--cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcccchh
Q 025613 36 LLLSRPGCRVFSVLATSSD-RVSALR-RSSA--VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPT 111 (250)
Q Consensus 36 ~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~ 111 (250)
+..+.+..++...+..... .++... +.+. ..... + . . ....++.++|.. ...+++++.++.++
T Consensus 6 v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~-l--~---~-~~~~~~~~~~~~--~~~~v~~~~~l~~a---- 72 (104)
T cd04594 6 VKDYDKVYEAKRIMIENDLLSLPVVDYNKFLGAVYLKD-I--E---N-ATYGDVVDYIVR--GIPYVRLTSTAEEA---- 72 (104)
T ss_pred ECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHH-H--h---h-hcccchhhhhhc--CCcEEcCCCCHHHH----
Confidence 4567788888877765443 333222 2211 11000 0 0 0 011247778877 78999999999999
Q ss_pred HHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 112 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 112 ~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
++.|.+++...+||++ +|+++|+|+..|+..
T Consensus 73 -~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 73 -WEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred -HHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 9999999999999998 589999999999874
No 186
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=97.76 E-value=0.0001 Score=53.82 Aligned_cols=49 Identities=29% Similarity=0.445 Sum_probs=44.5
Q ss_pred CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 191 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 191 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
+++++.+++++.++++.|.+.+.+.+||+++ |+++|++|..|+.+.+.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~ 50 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIE 50 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhc
Confidence 4678999999999999999999999999997 999999999999987654
No 187
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.75 E-value=0.00023 Score=68.47 Aligned_cols=54 Identities=26% Similarity=0.311 Sum_probs=49.6
Q ss_pred cCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhhhh
Q 025613 189 TPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 243 (250)
Q Consensus 189 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~~~ 243 (250)
++.|+-+.+.+++.++..+|.-.|++++-|.+ -|+++|+|..+++-+++.+...
T Consensus 809 DpaPfQLve~TSL~K~HtLFSLLgL~~AYVT~-~GrLvGVValkELRkAie~I~~ 862 (931)
T KOG0476|consen 809 DPAPFQLVEGTSLYKVHTLFSLLGLNHAYVTS-CGRLVGVVALKELRKAIENIYT 862 (931)
T ss_pred CCCceeeeccchHHHHHHHHHHhccchhhhcc-cCcEEEEEEHHHHHHHHHhccc
Confidence 56788899999999999999999999999988 7999999999999999998554
No 188
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=97.73 E-value=0.0001 Score=64.93 Aligned_cols=61 Identities=20% Similarity=0.455 Sum_probs=54.8
Q ss_pred cCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHHHHHHH
Q 025613 179 TNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDAD-GKLVGIITRGNVVRAAL 239 (250)
Q Consensus 179 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~-g~~vGiIt~~Dil~~l~ 239 (250)
.....+.++|.+ ++.+++.++++.++++.+.+.+..++||++++ ++++|+|+.+|++....
T Consensus 64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~ 127 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMR 127 (292)
T ss_pred cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhh
Confidence 457789999987 68999999999999999999999999999876 78999999999997553
No 189
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.70 E-value=0.00012 Score=56.95 Aligned_cols=50 Identities=36% Similarity=0.655 Sum_probs=45.1
Q ss_pred CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 190 PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 190 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
++++++++++++.++++.|.+.+...+||+|+ |+++|++|..|+++.+..
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~ 50 (143)
T cd04634 1 KNPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVT 50 (143)
T ss_pred CCcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHh
Confidence 35788999999999999999999999999996 999999999999987653
No 190
>PRK11573 hypothetical protein; Provisional
Probab=97.68 E-value=0.00011 Score=67.63 Aligned_cols=106 Identities=14% Similarity=0.050 Sum_probs=76.3
Q ss_pred cccceecCCCChhHHHHHhhhcCC-eeeeeCCCc------ccccccccccCCCCCCCCCceeccccccCCceeEeCCCCc
Q 025613 31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS------AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTT 103 (250)
Q Consensus 31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~ 103 (250)
..+.+++.+.+..++...+.+..+ ++|.+++.. .+..+...... .........+.++|++ +..++++.+
T Consensus 197 ~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~-~~~~~~~~~l~~~~r~---~~~Vpe~~~ 272 (413)
T PRK11573 197 NEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMT-EKKEFTKENMLRAADE---IYFVPEGTP 272 (413)
T ss_pred ceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhh-ccCcCCHHHHHhhccC---CeEeCCCCc
Confidence 456788899999999998876666 888887652 12222100000 0011111223355654 789999999
Q ss_pred hhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613 104 VDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 145 (250)
Q Consensus 104 v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~ 145 (250)
+.++ ++.|++++.+-+.|+|+.|...|+||.+|++..
T Consensus 273 l~~l-----L~~~~~~~~~~AiVvDEyG~~~GiVTleDilEe 309 (413)
T PRK11573 273 LSTQ-----LVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEE 309 (413)
T ss_pred HHHH-----HHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHH
Confidence 9999 999999999999999999999999999999975
No 191
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.65 E-value=0.00024 Score=51.88 Aligned_cols=53 Identities=38% Similarity=0.578 Sum_probs=47.2
Q ss_pred eeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 84 ~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
.+.++|.. .+.++.+++++.++ ++.|.+++...+||+++ |+++|+|+..|+.+
T Consensus 53 ~~~~~~~~--~~~~v~~~~~l~~~-----~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 53 QLALLMTR--DPPTVSPDDDVKEA-----AKLMVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred hHHHHhcC--CCceECCCCCHHHH-----HHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 46777877 78889999999999 99999999999999985 79999999999874
No 192
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.60 E-value=0.00021 Score=53.17 Aligned_cols=48 Identities=25% Similarity=0.340 Sum_probs=42.7
Q ss_pred CCeEecCCCCHHHHHHHHHHcC-CCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613 191 APVVVRETTNLEDAARLLLETK-YRRLPVVDADGKLVGIITRGNVVRAAL 239 (250)
Q Consensus 191 ~~~~v~~~~~l~~a~~~m~~~~-~~~lpVVd~~g~~vGiIt~~Dil~~l~ 239 (250)
+++++++++++.++++.|...+ ...+||+|+ |+++|+++..|+++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~ 50 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLS 50 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHh
Confidence 4678999999999999998877 789999998 99999999999987654
No 193
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=97.59 E-value=0.00017 Score=67.34 Aligned_cols=104 Identities=18% Similarity=0.132 Sum_probs=74.8
Q ss_pred ceecCCCChhHHHHHhhhcCC-eeeeeCCC-cc----cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613 34 PCLLLSRPGCRVFSVLATSSD-RVSALRRS-SA----VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107 (250)
Q Consensus 34 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a 107 (250)
+.+....++.++...|..... .+.....+ |. ...+... ..-........+|+++|+. +++++..++-+.||
T Consensus 160 ~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~-~v~~~g~~~~~~V~evmT~--p~~svd~~~~~feA 236 (610)
T COG2905 160 VTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRS-RVIADGRSKTQKVSEVMTS--PVISVDRGDFLFEA 236 (610)
T ss_pred cccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHH-HHHhcCCCcccchhhhhcc--CceeecCcchHHHH
Confidence 345557788888888765544 23333322 11 1111111 1112355667799999999 99999999999999
Q ss_pred cchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613 108 FVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 146 (250)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~ 146 (250)
+-.|..+++.++||++ +|+++|+||..||++..
T Consensus 237 -----ml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~ 269 (610)
T COG2905 237 -----MLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLF 269 (610)
T ss_pred -----HHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhh
Confidence 9999999999999998 68999999999999863
No 194
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=97.34 E-value=0.00072 Score=62.72 Aligned_cols=105 Identities=16% Similarity=0.099 Sum_probs=72.9
Q ss_pred cccceecCCCChhHHHHHhhhcC-CeeeeeCCCc------ccccccccccCCCCCCCCCceeccccccCCceeEeCCCCc
Q 025613 31 LQLPCLLLSRPGCRVFSVLATSS-DRVSALRRSS------AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTT 103 (250)
Q Consensus 31 ~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~ 103 (250)
..+.+++.+.+..++...+.+.. +++|..++.. .+..+.-.... .... ......... +++.++++.+
T Consensus 216 ~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~-~~~~--~~~~~~~~~---~~~~Vpet~~ 289 (429)
T COG1253 216 TDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALL-DGQS--DLDLRVLVR---PPLFVPETLS 289 (429)
T ss_pred ccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHh-cCcc--ccchhhccc---CCeEecCCCc
Confidence 44667888899999998885555 4888887431 12222111001 0100 112222222 4889999999
Q ss_pred hhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613 104 VDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 146 (250)
Q Consensus 104 v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~ 146 (250)
+.++ ++.|++.+.+...|+|+.|...|+||.+|++...
T Consensus 290 ~~~l-----L~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeI 327 (429)
T COG1253 290 LSDL-----LEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEI 327 (429)
T ss_pred HHHH-----HHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHH
Confidence 9999 9999999999999999999999999999999863
No 195
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=97.33 E-value=0.00071 Score=60.00 Aligned_cols=105 Identities=19% Similarity=0.272 Sum_probs=77.3
Q ss_pred eecCCCChhHHHHHhhhcCC-eeeeeCCCcccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcccchhHH
Q 025613 35 CLLLSRPGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTAL 113 (250)
Q Consensus 35 ~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~ 113 (250)
.+..+..+.+.....++..+ +.|....+.-..+- +............++..+|++ ++.++.+.+++..+ .
T Consensus 202 yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGv--Vt~rDv~~~~~~t~ieKVMtk--np~tv~~~tsVAsv-----a 272 (432)
T COG4109 202 YLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGV--VTMRDVLDKKPSTTIEKVMTK--NPITVRAKTSVASV-----A 272 (432)
T ss_pred eccccccHHHHHHHHHHcCCCccceecccceEEEE--EEehhhhcCCCCccHHHHhcc--CCeeecccchHHHH-----H
Confidence 34456666666666665555 55555544322211 111222445567789999999 89999999999999 9
Q ss_pred HHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhc
Q 025613 114 EILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 148 (250)
Q Consensus 114 ~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~ 148 (250)
+.|.-.++..+||+|++.+++|+||++|++..+..
T Consensus 273 q~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 273 QMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQM 307 (432)
T ss_pred HHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHH
Confidence 99999999999999999999999999999987654
No 196
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.0017 Score=58.09 Aligned_cols=104 Identities=18% Similarity=0.167 Sum_probs=75.9
Q ss_pred cceecCCCChhHHHHHhhhcCC-eeeeeCCCc------ccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchh
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVSALRRSS------AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD 105 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~ 105 (250)
+-.++.+.|...+.+++....+ +++.++++. ++..+...... ..+. .+-.++++-..++..+++++++.
T Consensus 212 i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~-e~~~---~~k~d~~~~a~epyFVPe~Tpl~ 287 (423)
T COG4536 212 IIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLN-EKNE---FTKEDILRAADEPYFVPEGTPLS 287 (423)
T ss_pred eeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhh-ccCc---ccHhHHHHHhcCCeecCCCCcHH
Confidence 4468889999999999877766 999999873 22222111111 1111 23334443333589999999999
Q ss_pred cccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613 106 EAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 145 (250)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~ 145 (250)
+. +..|.+++-+-..|||+-|.+.|+||.+|+++-
T Consensus 288 ~Q-----L~~F~~~k~hialVVDEYG~i~GLVTLEDIlEE 322 (423)
T COG4536 288 DQ-----LVAFQRNKKHIALVVDEYGDIQGLVTLEDILEE 322 (423)
T ss_pred HH-----HHHHHHhcceEEEEEeccCcEEeeeeHHHHHHH
Confidence 99 999999988888999999999999999999964
No 197
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=96.89 E-value=0.00088 Score=62.18 Aligned_cols=108 Identities=13% Similarity=0.189 Sum_probs=73.4
Q ss_pred ccccceecCCCChhHHHHHhhhcCCeeeeeCCC-ccccccc----ccccCCCCCCCCCceeccccccCCceeEeCCCCch
Q 025613 30 ALQLPCLLLSRPGCRVFSVLATSSDRVSALRRS-SAVFASG----TLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV 104 (250)
Q Consensus 30 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v 104 (250)
...+..+..+.+..+++..+.+... ....... ...+... .+.............++++|.+ +++.+.+++..
T Consensus 139 t~e~v~l~~~~Tv~~al~~ir~~~~-~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~~~~~i~~im~~--~~~~V~~~~dq 215 (451)
T COG2239 139 TTEFVTLPEDVTVDEALDRIRERAE-DAETIYYLYVVDEKGKLLGVVSLRDLLTAEPDELLKDLMED--DVVSVLADDDQ 215 (451)
T ss_pred eeeeEEeccCcCHHHHHHHHHHhcc-cccccceEEEECCccceEEEeeHHHHhcCCcHhHHHHHhcc--cceeecccCCH
Confidence 3445567778888888877654433 0000000 0111110 0000001123345678999999 79999999999
Q ss_pred hcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613 105 DEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 145 (250)
Q Consensus 105 ~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~ 145 (250)
+++ .+.+.+++.-.+||||++++++|+||..|+...
T Consensus 216 eev-----A~~~~~ydl~a~PVVd~~~~LiG~itiDDiidv 251 (451)
T COG2239 216 EEV-----ARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDV 251 (451)
T ss_pred HHH-----HHHHHHhCCeecceECCCCceeeeeeHHHHHHH
Confidence 999 999999999999999999999999999999865
No 198
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=96.87 E-value=0.0017 Score=58.90 Aligned_cols=55 Identities=25% Similarity=0.438 Sum_probs=49.6
Q ss_pred eeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613 84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 146 (250)
Q Consensus 84 ~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~ 146 (250)
.+.+.|.. ...++++++++.++ +..+.+++.+ +||+|++|+++|+|+..++++.+
T Consensus 303 ~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~ 357 (363)
T TIGR01186 303 GLQDVLID--DIYTVDAGTLLRET-----VRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDAL 357 (363)
T ss_pred chhhhhcc--CCceECCCCcHHHH-----HHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHH
Confidence 46677776 78899999999999 9999999988 99999999999999999999764
No 199
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=96.43 E-value=0.0052 Score=56.49 Aligned_cols=57 Identities=23% Similarity=0.266 Sum_probs=49.3
Q ss_pred eeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhc
Q 025613 84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 148 (250)
Q Consensus 84 ~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~ 148 (250)
.+++.+.. ...++.+++++.++ +..+.+.... +||+|++|+++|+|+..++++.+..
T Consensus 338 ~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 338 GLDAALID--APLAVDAQTPLSEL-----LSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDR 394 (400)
T ss_pred chhhhhcc--CCceeCCCCCHHHH-----HHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence 46666766 78899999999999 9999987766 9999999999999999999987643
No 200
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=95.07 E-value=0.04 Score=50.05 Aligned_cols=58 Identities=33% Similarity=0.367 Sum_probs=51.2
Q ss_pred CCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613 81 GVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 145 (250)
Q Consensus 81 ~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~ 145 (250)
....+.++|++ ..++.+.+.++.++ -+++.+++-..+||||++|.++-+|++.||.+.
T Consensus 169 ~~~~~~~vmt~--~~~~~~~gi~l~~~-----neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 169 NSLLVSDVMTK--NPVTGAQGITLKEA-----NEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN 226 (503)
T ss_pred ccchhhhhccc--ccccccccccHHHH-----HHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence 34568899999 56888889999999 999999888889999999999999999999863
No 201
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=94.89 E-value=0.068 Score=45.28 Aligned_cols=102 Identities=18% Similarity=0.153 Sum_probs=69.6
Q ss_pred cceecCCCChhHHHHHhhhcC-CeeeeeCCC------cccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchh
Q 025613 33 LPCLLLSRPGCRVFSVLATSS-DRVSALRRS------SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD 105 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~ 105 (250)
+-.+..+..+.+.+..+-.+. ++.|...+. .++..+.... . ........+.++.++ .+.|++.-.+.
T Consensus 79 M~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~-~--~~~~~~F~i~~lLRP---av~VPESKrvd 152 (293)
T COG4535 79 MITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPF-M--RSDAEPFDIKELLRP---AVVVPESKRVD 152 (293)
T ss_pred heeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHH-h--cCCcccccHHHhccc---ceecccchhHH
Confidence 344566777777777664443 355555443 2222221100 0 112233466777766 78899999999
Q ss_pred cccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613 106 EAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 145 (250)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~ 145 (250)
-. ++.++.++.+..+|+|+-|-..|+||.+|++..
T Consensus 153 ~l-----LkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEq 187 (293)
T COG4535 153 RL-----LKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQ 187 (293)
T ss_pred HH-----HHHHHhhcCceEEEEeccCCeeeeEEHHHHHHH
Confidence 99 999999999999999999999999999999974
No 202
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=94.74 E-value=0.033 Score=52.60 Aligned_cols=130 Identities=18% Similarity=0.163 Sum_probs=93.4
Q ss_pred CCCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCC
Q 025613 77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRAD 155 (250)
Q Consensus 77 ~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~ 155 (250)
.-.+....++++|++-.++..+..+..+... ......+.+++.+||.+.+ ...+|.+-...+..+....
T Consensus 198 ~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~----~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~------ 267 (498)
T KOG2118|consen 198 ALELTEKLVGEVMTPIEDVFALDANTKLDRE----TVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVE------ 267 (498)
T ss_pred hHHHHHHHHHHhccchhhheeeccccccchH----HHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhccc------
Confidence 3455667899999998888888888877733 1556668899999999864 2344443334444331100
Q ss_pred CCCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHH
Q 025613 156 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 235 (250)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil 235 (250)
......++...+.....-+++++++.+.++.|++.+.+++.|.+ ...-+|+++..|+
T Consensus 268 ---------------------~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~~l~~~- 324 (498)
T KOG2118|consen 268 ---------------------VPLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVLTLEDL- 324 (498)
T ss_pred ---------------------cccccccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeEeccch-
Confidence 02235677788888788899999999999999988887777766 6678899999998
Q ss_pred HHHH
Q 025613 236 RAAL 239 (250)
Q Consensus 236 ~~l~ 239 (250)
+...
T Consensus 325 ~~~~ 328 (498)
T KOG2118|consen 325 EEVV 328 (498)
T ss_pred hhhc
Confidence 6554
No 203
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=93.99 E-value=0.072 Score=50.88 Aligned_cols=56 Identities=18% Similarity=0.278 Sum_probs=50.1
Q ss_pred ceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613 83 YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 145 (250)
Q Consensus 83 ~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~ 145 (250)
+...-+|++ .++++++++++..+ ..++++-+.+++.|++...+.+|++|++|+.+.
T Consensus 690 vDl~p~~n~--sPytV~~~mSl~k~-----~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~ 745 (762)
T KOG0474|consen 690 VDLHPFMNP--SPYTVPETMSLAKA-----FILFRQLGLRHLLVVPKTNRVVGILTRKDLARY 745 (762)
T ss_pred cccccccCC--CCcccCcccchHHH-----HHHHHHhcceeEEEecCCCceeEEEehhhhhhH
Confidence 356678888 89999999999999 999999999999999988888999999999854
No 204
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=92.85 E-value=0.17 Score=46.38 Aligned_cols=53 Identities=15% Similarity=0.283 Sum_probs=42.9
Q ss_pred eeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613 84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 146 (250)
Q Consensus 84 ~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~ 146 (250)
++.+ +.. +..++++++++.++ +..+.+.+++ ++|+|+ |+++|+|+..+++.++
T Consensus 327 ~~~~-~~~--~~~~~~~~~~~~~~-----~~~~~~~~~~-~~v~~~-~~~~g~~~~~~~~~~~ 379 (382)
T TIGR03415 327 EVES-LEA--APTVINPDTLMRDV-----LAARHRTGGA-ILLVEN-GRIVGVIGDDNIYHAL 379 (382)
T ss_pred chhh-hcc--cCcccCCCCcHHHH-----HHHHhcCCCC-eEEeeC-CeEEEEEeHHHHHHHH
Confidence 3444 344 67889999999999 9988887754 788885 9999999999999764
No 205
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=92.52 E-value=0.24 Score=42.81 Aligned_cols=99 Identities=23% Similarity=0.210 Sum_probs=59.1
Q ss_pred eeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH-HHHhccCCCcccccccCCCe----EecC
Q 025613 123 GFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ-KLLSKTNGKMVGDLMTPAPV----VVRE 197 (250)
Q Consensus 123 ~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~im~~~~~----~v~~ 197 (250)
.+.|++ +|+++-+=+..++++-.+..- -..|-... ..........+.+.|.+... .+..
T Consensus 205 ri~vm~-~G~i~Q~~~P~~il~~Pan~F---------------V~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 268 (309)
T COG1125 205 RIAVMD-AGEIVQYDTPDEILANPANDF---------------VEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLLE 268 (309)
T ss_pred eEEEec-CCeEEEeCCHHHHHhCccHHH---------------HHHHhccccccccccchhhHHHhhcccccccCCcccc
Confidence 466777 689999999988885311100 00000000 00011122334444433221 1333
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613 198 TTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237 (250)
Q Consensus 198 ~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~ 237 (250)
.....+++..+...+...+||+|++|+++|.||+.+++..
T Consensus 269 ~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 269 GFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred chhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 4445558888888999999999999999999999999864
No 206
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=90.91 E-value=0.3 Score=47.75 Aligned_cols=63 Identities=17% Similarity=0.233 Sum_probs=54.8
Q ss_pred CCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC--CcEEEEEehHHHHHHHHhhh
Q 025613 180 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD--GKLVGIITRGNVVRAALQIK 242 (250)
Q Consensus 180 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~--g~~vGiIt~~Dil~~l~~~~ 242 (250)
....++++|.+++.++..+++..+.-+.+....++.+|+||+. -.++|.|.+..+...+..+.
T Consensus 586 h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~i 650 (931)
T KOG0476|consen 586 HTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHI 650 (931)
T ss_pred eEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhc
Confidence 3567899999999999999999999999887779999999853 35899999999999888744
No 207
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=89.48 E-value=0.56 Score=41.79 Aligned_cols=48 Identities=25% Similarity=0.367 Sum_probs=40.5
Q ss_pred ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhh
Q 025613 94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 147 (250)
Q Consensus 94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~ 147 (250)
.+..+..++++.+. +..+.+.+. .++|+|++|+++|+++...++.++.
T Consensus 336 ~~~~v~~d~~~~~~-----~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 336 DVLTVDADTPLSEI-----LARIRQAPC-PVAVVDEDGRYVGIISRGELLEALA 383 (386)
T ss_pred cccccCccchHHHH-----HHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHh
Confidence 57788899999888 877777664 5889999999999999999998753
No 208
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=85.33 E-value=1.6 Score=37.84 Aligned_cols=32 Identities=31% Similarity=0.503 Sum_probs=28.9
Q ss_pred HHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 113 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 113 ~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
+..+...+...+||+|++|+++|.|+..+|+.
T Consensus 276 ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~ 307 (309)
T COG1125 276 LSDFLARGRSVLPVVDEDGRPLGTVTRADLLD 307 (309)
T ss_pred HHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence 77777888889999999999999999999974
No 209
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=83.78 E-value=2 Score=41.34 Aligned_cols=59 Identities=14% Similarity=0.228 Sum_probs=49.1
Q ss_pred CCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 145 (250)
Q Consensus 79 ~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~ 145 (250)
....+..+++|.. .+.++...++...+ ++++++-+.....| +++|++.|+||.+|++++
T Consensus 635 ~~~~~~lk~il~~--tp~tv~d~tp~~~v-----~~~F~~lg~~~~~v-~~~G~l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 635 IPSRLDLKDILDM--TPFTVTDLTPMETV-----VDLFRKLGLRQILV-TKNGILLGIITKKDCLRH 693 (696)
T ss_pred CCCCcCceeeccC--CcccccccCcHHHH-----HHHHHhhCceEEEE-ccCCeeEeeeehHHHHHh
Confidence 3345567788877 78889999999999 99999999888766 458999999999999975
No 210
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=65.73 E-value=12 Score=27.51 Aligned_cols=62 Identities=13% Similarity=0.240 Sum_probs=40.5
Q ss_pred CcccccccCCCeEecCCCC---HHHHHHHHHHcCCCEEEEEcC-CCcE----EEEEehHHHHHHHHhhhh
Q 025613 182 KMVGDLMTPAPVVVRETTN---LEDAARLLLETKYRRLPVVDA-DGKL----VGIITRGNVVRAALQIKH 243 (250)
Q Consensus 182 ~~v~~im~~~~~~v~~~~~---l~~a~~~m~~~~~~~lpVVd~-~g~~----vGiIt~~Dil~~l~~~~~ 243 (250)
..+.+.++.+.+.+..+.+ ..+....+...+.+.+.+++. +|++ .|.++.++++..+.+...
T Consensus 43 ~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 43 ESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred HHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHHh
Confidence 4466666666666555543 333444444556667778887 6754 499999999988877543
No 211
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=64.04 E-value=16 Score=35.69 Aligned_cols=97 Identities=18% Similarity=0.228 Sum_probs=56.7
Q ss_pred HHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHHHHhccCCCcccccc-cCC
Q 025613 113 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLM-TPA 191 (250)
Q Consensus 113 ~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im-~~~ 191 (250)
.+.+...+ ..+++.|.+|.++.+....++.......+- ..+..|.. +...+.-++-.+ ...
T Consensus 65 ~~~l~~~~-~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~---------~~G~~w~E--------~~~GTnaig~al~~~~ 126 (638)
T PRK11388 65 WEYMADRE-CALLILDETGCILSRNGDPQTLQQLSALGF---------NDGTYCAE--------GIIGTNALSLAAISGQ 126 (638)
T ss_pred HHHhcCCC-cEEEEEcCCceEEEEeCCHHHHHHHHHcCC---------ccCCccch--------hccCcCHHHHHHhcCC
Confidence 44444444 678889999999999998888754322110 01112211 001111122222 345
Q ss_pred CeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEe
Q 025613 192 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIIT 230 (250)
Q Consensus 192 ~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt 230 (250)
|+.|.......+. +....+..+||.|.+|+++|+|+
T Consensus 127 pv~v~g~EH~~~~---~~~~~c~aaPI~d~~G~liGvl~ 162 (638)
T PRK11388 127 PVKTMGDQHFKQA---LHNWAFCATPVFDSKGRLTGTIA 162 (638)
T ss_pred ceEEecHHHHHHh---ccCceEEeeEEEcCCCCEEEEEE
Confidence 7777766555444 34455667899998999999996
No 212
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=59.59 E-value=26 Score=24.30 Aligned_cols=28 Identities=21% Similarity=0.470 Sum_probs=21.6
Q ss_pred CEEEEEcCCCcEEEEEehHHHHHHHHhh
Q 025613 214 RRLPVVDADGKLVGIITRGNVVRAALQI 241 (250)
Q Consensus 214 ~~lpVVd~~g~~vGiIt~~Dil~~l~~~ 241 (250)
+.+-||+++|..+|+++..+-++...+.
T Consensus 13 ~~VrlI~~~g~~lGv~~~~eAl~~A~~~ 40 (76)
T PF05198_consen 13 PEVRLIDEDGEQLGVMSLREALRLAKEK 40 (76)
T ss_dssp SEEEEE-TTS-EEEEEEHHHHHHHHHHT
T ss_pred CEEEEECCCCcEeceEEHHHHHHHHHHc
Confidence 5677889999999999999988876554
No 213
>smart00594 UAS UAS domain.
Probab=51.54 E-value=22 Score=26.67 Aligned_cols=58 Identities=12% Similarity=0.162 Sum_probs=37.3
Q ss_pred CCcccccccCCCeEecCCCCHHHHHHHHHHc---CCCEEEEEcCCC---------cEEEEEehHHHHHHH
Q 025613 181 GKMVGDLMTPAPVVVRETTNLEDAARLLLET---KYRRLPVVDADG---------KLVGIITRGNVVRAA 238 (250)
Q Consensus 181 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~---~~~~lpVVd~~g---------~~vGiIt~~Dil~~l 238 (250)
+..+.++++.+.+.+..+.+-.+..+++... +...+.+++.+| ++-|-++.++++..+
T Consensus 52 ~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 52 NEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 3456667777777755555545555555554 556677888765 345777888877654
No 214
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=41.80 E-value=29 Score=25.67 Aligned_cols=17 Identities=41% Similarity=0.843 Sum_probs=12.9
Q ss_pred EEEEEcCCCcEEEEEeh
Q 025613 215 RLPVVDADGKLVGIITR 231 (250)
Q Consensus 215 ~lpVVd~~g~~vGiIt~ 231 (250)
..||.|.+|+++|+|..
T Consensus 93 ~~PV~d~~g~viG~V~V 109 (116)
T PF14827_consen 93 FAPVYDSDGKVIGVVSV 109 (116)
T ss_dssp EEEEE-TTS-EEEEEEE
T ss_pred EEeeECCCCcEEEEEEE
Confidence 57999889999999874
No 215
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=40.86 E-value=37 Score=32.49 Aligned_cols=38 Identities=24% Similarity=0.427 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613 199 TNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237 (250)
Q Consensus 199 ~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~ 237 (250)
..++.+.+...+.|-..++|++ ||++.|+|..+|+++-
T Consensus 413 ~~l~~~~~~vs~~GGTPL~V~~-~~~~~GVI~LkDivK~ 450 (681)
T COG2216 413 EDLDAAVDEVSRLGGTPLVVVE-NGRILGVIYLKDIVKP 450 (681)
T ss_pred HHHHHHHHHHHhcCCCceEEEE-CCEEEEEEEehhhcch
Confidence 3467777777888888898988 7999999999999864
No 216
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=39.25 E-value=32 Score=25.43 Aligned_cols=18 Identities=44% Similarity=0.528 Sum_probs=13.5
Q ss_pred CeeEEEeCCCcEEEEEeh
Q 025613 122 TGFPVIDDDWKLVGLVSD 139 (250)
Q Consensus 122 ~~~~Vvd~~g~~~GiVt~ 139 (250)
-..||.|.+|+++|+|..
T Consensus 92 ~~~PV~d~~g~viG~V~V 109 (116)
T PF14827_consen 92 AFAPVYDSDGKVIGVVSV 109 (116)
T ss_dssp EEEEEE-TTS-EEEEEEE
T ss_pred EEEeeECCCCcEEEEEEE
Confidence 368999889999999975
No 217
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=37.25 E-value=65 Score=22.28 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=19.4
Q ss_pred CCeeEEEeCCCcEEEEEehHHHHhh
Q 025613 121 ITGFPVIDDDWKLVGLVSDYDLLAL 145 (250)
Q Consensus 121 ~~~~~Vvd~~g~~~GiVt~~dL~~~ 145 (250)
.+.+-|++++|..+|+++..+-++.
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~ 36 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRL 36 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHH
T ss_pred CCEEEEECCCCcEeceEEHHHHHHH
Confidence 4568888999999999999999875
No 218
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=30.47 E-value=39 Score=24.21 Aligned_cols=19 Identities=37% Similarity=0.616 Sum_probs=16.2
Q ss_pred HcCCCeeEEEeCCCcEEEE
Q 025613 118 EKRITGFPVIDDDWKLVGL 136 (250)
Q Consensus 118 ~~~~~~~~Vvd~~g~~~Gi 136 (250)
..+.++-||+|.+|+++|+
T Consensus 102 ~~G~SGgpv~~~~G~vvGi 120 (120)
T PF13365_consen 102 RPGSSGGPVFDSDGRVVGI 120 (120)
T ss_dssp STTTTTSEEEETTSEEEEE
T ss_pred CCCcEeHhEECCCCEEEeC
Confidence 3467889999999999997
No 219
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=28.27 E-value=54 Score=23.46 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=21.8
Q ss_pred HHHHHHHHcCCCEEEEEcCCCc----EEEEEehHHHHHHH
Q 025613 203 DAARLLLETKYRRLPVVDADGK----LVGIITRGNVVRAA 238 (250)
Q Consensus 203 ~a~~~m~~~~~~~lpVVd~~g~----~vGiIt~~Dil~~l 238 (250)
+..+.+.-.+...+.+.|++|+ +.|.++.+++.+.|
T Consensus 73 ~l~~~~~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 73 ELAQRYGVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp HHHHHTT--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred HHHHHcCCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 3455555566677778887776 56888888887754
No 220
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=27.47 E-value=55 Score=22.14 Aligned_cols=18 Identities=33% Similarity=0.840 Sum_probs=12.9
Q ss_pred EEEEEcCCCcEEEEEehH
Q 025613 215 RLPVVDADGKLVGIITRG 232 (250)
Q Consensus 215 ~lpVVd~~g~~vGiIt~~ 232 (250)
..||.+++|+++|++...
T Consensus 18 s~pi~~~~g~~~Gvv~~d 35 (81)
T PF02743_consen 18 SVPIYDDDGKIIGVVGID 35 (81)
T ss_dssp EEEEEETTTEEEEEEEEE
T ss_pred EEEEECCCCCEEEEEEEE
Confidence 357888788888886543
No 221
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=27.06 E-value=1.4e+02 Score=23.51 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=24.5
Q ss_pred CCEEEEEcCCCcEEEEE--------ehHHHHHHHHhhhhhhh
Q 025613 213 YRRLPVVDADGKLVGII--------TRGNVVRAALQIKHATE 246 (250)
Q Consensus 213 ~~~lpVVd~~g~~vGiI--------t~~Dil~~l~~~~~~~~ 246 (250)
.+...|+|.+|+++... ...++++.+..+....+
T Consensus 120 ~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~~~~~~ 161 (173)
T cd03015 120 LRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQFVEE 161 (173)
T ss_pred eeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhhhhh
Confidence 45788999999988887 35667877766654443
No 222
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=25.87 E-value=84 Score=30.23 Aligned_cols=31 Identities=13% Similarity=0.255 Sum_probs=25.7
Q ss_pred HHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613 113 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144 (250)
Q Consensus 113 ~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~ 144 (250)
.+.+...+-+.++|++ +|++.|+|..+|+.+
T Consensus 419 ~~~vs~~GGTPL~V~~-~~~~~GVI~LkDivK 449 (681)
T COG2216 419 VDEVSRLGGTPLVVVE-NGRILGVIYLKDIVK 449 (681)
T ss_pred HHHHHhcCCCceEEEE-CCEEEEEEEehhhcc
Confidence 5666667778898988 679999999999984
No 223
>PF14044 NETI: NETI protein
Probab=25.77 E-value=87 Score=20.45 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=19.7
Q ss_pred eEecCCCCHHHHHHHHHHcCCCE
Q 025613 193 VVVRETTNLEDAARLLLETKYRR 215 (250)
Q Consensus 193 ~~v~~~~~l~~a~~~m~~~~~~~ 215 (250)
+.|.++.++.+.++.|.+.|+..
T Consensus 2 FeV~enETI~~CL~RM~~eGY~P 24 (57)
T PF14044_consen 2 FEVEENETISDCLARMKKEGYMP 24 (57)
T ss_pred eeccCCCcHHHHHHHHHHcCCCc
Confidence 35789999999999999998843
No 224
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=22.91 E-value=1.9e+02 Score=26.79 Aligned_cols=81 Identities=23% Similarity=0.288 Sum_probs=49.4
Q ss_pred CCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHHHHhccCCCcccc-cccCCCeEecCCC
Q 025613 121 ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGD-LMTPAPVVVRETT 199 (250)
Q Consensus 121 ~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-im~~~~~~v~~~~ 199 (250)
++.++|.++ +.|++|..||. .+. ...+++ ++.+. -..-.|.
T Consensus 306 v~v~~v~n~---VagLlTg~Di~-~l~---------------------------------~~~~~d~~liP~-~~fldd~ 347 (404)
T TIGR03278 306 VNVVPVKKD---IACLITEDDLE-ELD---------------------------------LSEVKETVIIPG-RAFVHDM 347 (404)
T ss_pred EEEEEecCc---ccccchHHHHH-Hhc---------------------------------CCCCCCEEEecC-ccccccc
Confidence 455565553 99999999999 421 112222 23333 2334466
Q ss_pred CHHHHHHHHHHcCCCEEEEEc-----CCCcEEEEEehHHHHHHHHhhh
Q 025613 200 NLEDAARLLLETKYRRLPVVD-----ADGKLVGIITRGNVVRAALQIK 242 (250)
Q Consensus 200 ~l~~a~~~m~~~~~~~lpVVd-----~~g~~vGiIt~~Dil~~l~~~~ 242 (250)
+++++.+. .+....+|-. .+|..-|..|+++++++=.+..
T Consensus 348 t~~~~~~~---l~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (404)
T TIGR03278 348 VAEEILKR---DGVDRIVVRGPDRLTADGEMSGGMTREEVLEFELEAF 392 (404)
T ss_pred cHHHHHHH---hCCcEEEecCCceeeecceecccccHHHHHHHHHHHH
Confidence 77766554 4665554432 2689999999999998644433
No 225
>CHL00199 infC translation initiation factor 3; Provisional
Probab=21.27 E-value=1.1e+02 Score=25.00 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=8.8
Q ss_pred EEEEcCCCcEEEEEehHHHHH
Q 025613 216 LPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 216 lpVVd~~g~~vGiIt~~Dil~ 236 (250)
+-|||++|..+|+++..+-++
T Consensus 27 VrlI~~~G~~lGv~~~~eAl~ 47 (182)
T CHL00199 27 VRVIDDSGEQLGIFTSEQAIQ 47 (182)
T ss_pred EEEECCCCcCCCceeHHHHHH
Confidence 334444444444444444433
No 226
>PHA00673 acetyltransferase domain containing protein
Probab=21.05 E-value=2e+02 Score=22.85 Aligned_cols=33 Identities=15% Similarity=-0.030 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeh
Q 025613 199 TNLEDAARLLLETKYRRLPVVDADGKLVGIITR 231 (250)
Q Consensus 199 ~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~ 231 (250)
.+-.++++.+.+.+...+.|..++|+++|.+..
T Consensus 40 ~~y~~af~ai~~dp~~~llVa~~~g~vVG~~~l 72 (154)
T PHA00673 40 APDHHAYAGMEAAGVAHFLGVFRGEELVGFACL 72 (154)
T ss_pred chhHHHHHHHHhCCCcEEEEEEECCEEEEEEEE
Confidence 567777888888888888888778999996543
No 227
>PRK10026 arsenate reductase; Provisional
Probab=20.92 E-value=4.1e+02 Score=20.67 Aligned_cols=108 Identities=15% Similarity=0.108 Sum_probs=59.3
Q ss_pred eeEeCCCCchhcccchhHHHHHHHcCCCeeEEEe-CCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 95 LHVVKPTTTVDEAFVPTALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 95 ~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd-~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
++..+...|...| ++.+.++++..- +.| -...+ |..+|..++...|.+ + .
T Consensus 6 iY~~p~Cst~RKA-----~~wL~~~gi~~~-~~d~~~~pp----t~~eL~~~l~~~g~~-------------~------~ 56 (141)
T PRK10026 6 IYHNPACGTSRNT-----LEMIRNSGTEPT-IIHYLETPP----TRDELVKLIADMGIS-------------V------R 56 (141)
T ss_pred EEeCCCCHHHHHH-----HHHHHHCCCCcE-EEeeeCCCc----CHHHHHHHHHhCCCC-------------H------H
Confidence 4555666778888 999999987543 333 11223 788888775533310 0 0
Q ss_pred HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCC-EEEE-EcCCCcEEEEEehHHHHHHH
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYR-RLPV-VDADGKLVGIITRGNVVRAA 238 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~-~lpV-Vd~~g~~vGiIt~~Dil~~l 238 (250)
.+. +..+....++-.. . .+.+..+++++|.+++.= .=|| ++++|.++|- ..+.++..+
T Consensus 57 ~li-nt~~~~yr~L~~~----~-~~ls~~e~l~ll~~~P~LIKRPIi~~~~~a~i~R-p~e~v~~~l 116 (141)
T PRK10026 57 ALL-RKNVEPYEELGLA----E-DKFTDDQLIDFMLQHPILINRPIVVTPLGTRLCR-PSEVVLEIL 116 (141)
T ss_pred HHH-HcCCchHHHcCCC----c-cCCCHHHHHHHHHhCccceeCcEEEcCCCeEEEC-CHHHHHHHh
Confidence 000 1111222222111 1 356789999999987762 1143 4556777777 556666655
No 228
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=20.61 E-value=1.5e+02 Score=20.90 Aligned_cols=28 Identities=21% Similarity=0.177 Sum_probs=18.9
Q ss_pred HHHHHHcCCCeeEEEeCCCcEEEEEehH
Q 025613 113 LEILVEKRITGFPVIDDDWKLVGLVSDY 140 (250)
Q Consensus 113 ~~~~~~~~~~~~~Vvd~~g~~~GiVt~~ 140 (250)
++.+.+.+...+.|++++|+++|++...
T Consensus 35 ~~~~~~~~~~~~~v~~~~~~ivG~~~~~ 62 (117)
T PF13673_consen 35 LEEYLEEGSHTIFVAEEGGEIVGFAWLE 62 (117)
T ss_dssp HHHHHCTCCCEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHhcCCEEEEEEECCEEEEEEEEc
Confidence 3444444445677777789999999854
No 229
>PRK00137 rplI 50S ribosomal protein L9; Reviewed
Probab=20.43 E-value=1.9e+02 Score=22.62 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=19.4
Q ss_pred EcCCCcEEEEEehHHHHHHHHhh
Q 025613 219 VDADGKLVGIITRGNVVRAALQI 241 (250)
Q Consensus 219 Vd~~g~~vGiIt~~Dil~~l~~~ 241 (250)
++++|++-|-||..||.+.+.+.
T Consensus 83 ~g~~gklfGsVt~~~I~~~l~~~ 105 (147)
T PRK00137 83 AGEDGKLFGSVTTKDIAEALKKQ 105 (147)
T ss_pred cCCCCeEEeeeCHHHHHHHHHHc
Confidence 35689999999999999998654
No 230
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=20.18 E-value=2.9e+02 Score=19.18 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhhhhh
Q 025613 198 TTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHA 244 (250)
Q Consensus 198 ~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~~~~ 244 (250)
.-++.++++.+.+.|++.+.|+- -.-.-|.=+..|+...+.+.+++
T Consensus 44 ~P~i~~~l~~l~~~g~~~vvvvP-l~~~~g~h~~~di~~~~~~~~~~ 89 (101)
T cd03409 44 GPDTEEAIRELAEEGYQRVVIVP-LAPVSGDEVFYDIDSEIGLVRKQ 89 (101)
T ss_pred CCCHHHHHHHHHHcCCCeEEEEe-CccccChhhHHHHHHHHHHHHHh
Confidence 45689999999999999998886 34446888888999998887764
Done!