Query 025613
Match_columns 250
No_of_seqs 202 out of 1692
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 13:55:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025613.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025613hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sl7_A CBS domain-containing p 99.9 2.7E-24 9.1E-29 173.0 11.6 159 82-245 3-161 (180)
2 4gqw_A CBS domain-containing p 99.9 5.7E-23 2E-27 160.4 12.0 148 81-247 3-150 (152)
3 4esy_A CBS domain containing m 99.9 1.3E-23 4.5E-28 168.5 7.5 149 80-241 15-163 (170)
4 3k6e_A CBS domain protein; str 99.9 7.2E-23 2.5E-27 162.6 9.4 132 84-245 16-147 (156)
5 3lv9_A Putative transporter; C 99.9 5.5E-22 1.9E-26 155.1 14.2 128 78-241 18-146 (148)
6 3jtf_A Magnesium and cobalt ef 99.9 5.6E-22 1.9E-26 151.8 12.9 124 81-241 3-127 (129)
7 3i8n_A Uncharacterized protein 99.9 2.4E-22 8.4E-27 153.9 10.9 126 80-240 3-129 (130)
8 3lhh_A CBS domain protein; str 99.9 7.3E-22 2.5E-26 158.8 13.7 129 78-242 37-166 (172)
9 3hf7_A Uncharacterized CBS-dom 99.9 2.9E-22 1E-26 153.8 10.4 125 83-240 2-127 (130)
10 3nqr_A Magnesium and cobalt ef 99.9 3.8E-22 1.3E-26 152.2 10.9 123 82-239 2-125 (127)
11 3lfr_A Putative metal ION tran 99.9 3.5E-22 1.2E-26 154.4 10.4 127 82-242 2-129 (136)
12 3fv6_A YQZB protein; CBS domai 99.9 1.4E-21 4.9E-26 154.7 13.1 136 79-249 13-153 (159)
13 3kpb_A Uncharacterized protein 99.9 1.3E-21 4.4E-26 147.6 11.8 119 84-240 2-120 (122)
14 2ef7_A Hypothetical protein ST 99.9 3.3E-21 1.1E-25 147.6 14.1 129 81-245 2-130 (133)
15 3gby_A Uncharacterized protein 99.9 1.3E-21 4.5E-26 149.3 11.7 125 81-241 3-127 (128)
16 3lqn_A CBS domain protein; csg 99.9 1.4E-21 4.9E-26 152.8 11.0 138 79-245 11-148 (150)
17 2yzi_A Hypothetical protein PH 99.9 7.1E-21 2.4E-25 146.6 14.1 129 80-244 4-133 (138)
18 3oco_A Hemolysin-like protein 99.9 1.4E-21 4.7E-26 153.9 9.7 127 81-243 18-146 (153)
19 3fhm_A Uncharacterized protein 99.9 3.7E-21 1.3E-25 153.3 11.6 136 77-244 18-154 (165)
20 3ocm_A Putative membrane prote 99.8 6.6E-21 2.3E-25 153.7 12.3 127 79-242 32-159 (173)
21 2o16_A Acetoin utilization pro 99.8 9.1E-21 3.1E-25 150.4 12.8 137 82-245 4-140 (160)
22 2rih_A Conserved protein with 99.8 1.7E-20 5.7E-25 145.3 13.8 125 83-243 5-131 (141)
23 2p9m_A Hypothetical protein MJ 99.8 1.5E-20 5.2E-25 144.6 12.8 127 79-240 4-136 (138)
24 3kxr_A Magnesium transporter, 99.8 2.4E-20 8.4E-25 154.5 14.7 124 81-244 52-178 (205)
25 2rc3_A CBS domain; in SITU pro 99.8 1.7E-20 5.8E-25 144.1 12.4 123 84-241 7-132 (135)
26 1pbj_A Hypothetical protein; s 99.8 1.2E-20 3.9E-25 142.8 11.2 122 83-240 1-122 (125)
27 3oi8_A Uncharacterized protein 99.8 5.4E-21 1.9E-25 151.1 9.7 121 79-235 34-155 (156)
28 3ctu_A CBS domain protein; str 99.8 7.2E-21 2.5E-25 149.9 9.8 135 82-246 14-148 (156)
29 2emq_A Hypothetical conserved 99.8 4E-20 1.4E-24 145.5 13.5 137 79-244 7-143 (157)
30 1yav_A Hypothetical protein BS 99.8 1.5E-20 5E-25 148.7 10.5 139 79-246 10-148 (159)
31 1o50_A CBS domain-containing p 99.8 3E-20 1E-24 146.7 11.9 145 77-242 10-155 (157)
32 1y5h_A Hypothetical protein RV 99.8 8.2E-21 2.8E-25 145.4 8.4 126 80-240 5-131 (133)
33 3k2v_A Putative D-arabinose 5- 99.8 2.3E-20 7.9E-25 146.1 10.8 121 83-236 28-148 (149)
34 2d4z_A Chloride channel protei 99.8 1.1E-19 3.8E-24 154.9 14.7 156 79-242 9-248 (250)
35 1pvm_A Conserved hypothetical 99.8 7E-20 2.4E-24 148.5 12.0 125 83-240 9-133 (184)
36 2nyc_A Nuclear protein SNF4; b 99.8 1.1E-19 3.9E-24 140.4 12.0 125 83-240 8-141 (144)
37 2j9l_A Chloride channel protei 99.8 9.8E-20 3.4E-24 146.9 11.8 156 79-245 7-170 (185)
38 4fry_A Putative signal-transdu 99.8 9.6E-20 3.3E-24 143.5 11.0 129 83-244 7-139 (157)
39 2uv4_A 5'-AMP-activated protei 99.8 1.2E-19 4.1E-24 142.4 11.5 128 78-240 18-151 (152)
40 2pfi_A Chloride channel protei 99.8 1.9E-19 6.5E-24 142.3 11.8 134 80-244 10-151 (164)
41 3ddj_A CBS domain-containing p 99.8 3.2E-19 1.1E-23 154.4 13.0 183 32-245 102-290 (296)
42 1vr9_A CBS domain protein/ACT 99.8 8.4E-19 2.9E-23 145.8 14.0 121 82-242 12-132 (213)
43 2oux_A Magnesium transporter; 99.8 6E-19 2.1E-23 153.2 13.0 125 79-243 133-262 (286)
44 2yvy_A MGTE, Mg2+ transporter 99.8 1.5E-18 5.1E-23 149.9 13.9 122 81-242 133-259 (278)
45 2yzq_A Putative uncharacterize 99.8 1.1E-18 3.6E-23 149.7 11.9 199 33-240 70-279 (282)
46 3l2b_A Probable manganase-depe 99.8 6.6E-19 2.3E-23 149.0 10.3 148 82-239 6-243 (245)
47 3ddj_A CBS domain-containing p 99.8 3.5E-18 1.2E-22 147.9 13.9 174 32-241 29-215 (296)
48 3kh5_A Protein MJ1225; AMPK, A 99.8 2.1E-18 7.2E-23 147.4 10.7 181 32-238 93-279 (280)
49 3t4n_C Nuclear protein SNF4; C 99.8 5.5E-18 1.9E-22 148.4 13.1 176 33-241 124-321 (323)
50 3kh5_A Protein MJ1225; AMPK, A 99.7 1.7E-17 5.8E-22 141.7 13.6 173 32-240 13-205 (280)
51 2zy9_A Mg2+ transporter MGTE; 99.7 2.4E-17 8.3E-22 152.5 14.3 123 80-242 152-279 (473)
52 3org_A CMCLC; transporter, tra 99.7 1.2E-18 4.1E-23 166.5 4.5 157 80-242 450-627 (632)
53 3pc3_A CG1753, isoform A; CBS, 99.7 1E-17 3.5E-22 157.0 10.5 130 79-244 380-515 (527)
54 2yzq_A Putative uncharacterize 99.7 3.9E-17 1.3E-21 139.9 13.1 167 33-235 11-179 (282)
55 2qrd_G Protein C1556.08C; AMPK 99.7 4.9E-17 1.7E-21 142.9 12.6 178 34-244 120-319 (334)
56 3usb_A Inosine-5'-monophosphat 99.7 4.4E-17 1.5E-21 151.9 12.0 118 84-240 114-234 (511)
57 2v8q_E 5'-AMP-activated protei 99.7 4.9E-16 1.7E-20 136.4 12.4 178 32-242 127-325 (330)
58 4fxs_A Inosine-5'-monophosphat 99.7 2.9E-17 1E-21 152.6 3.7 117 84-239 90-208 (496)
59 2v8q_E 5'-AMP-activated protei 99.6 5.2E-16 1.8E-20 136.3 10.4 145 80-241 32-178 (330)
60 1vrd_A Inosine-5'-monophosphat 99.6 3.4E-17 1.2E-21 152.3 1.9 190 2-241 21-216 (494)
61 1zfj_A Inosine monophosphate d 99.6 2.1E-15 7.3E-20 140.0 13.9 118 84-240 91-211 (491)
62 3t4n_C Nuclear protein SNF4; C 99.6 1.5E-15 5.1E-20 132.8 11.7 180 31-241 40-249 (323)
63 1me8_A Inosine-5'-monophosphat 99.6 5.2E-17 1.8E-21 151.3 1.1 119 85-241 98-222 (503)
64 4avf_A Inosine-5'-monophosphat 99.6 5.6E-17 1.9E-21 150.6 0.6 118 83-240 88-207 (490)
65 2qrd_G Protein C1556.08C; AMPK 99.6 1.1E-14 3.9E-19 127.8 12.4 144 82-240 21-172 (334)
66 4af0_A Inosine-5'-monophosphat 99.6 2.2E-16 7.6E-21 145.1 0.8 163 28-239 88-257 (556)
67 1jcn_A Inosine monophosphate d 99.5 3.8E-16 1.3E-20 145.9 -3.0 119 84-239 109-232 (514)
68 2cu0_A Inosine-5'-monophosphat 99.4 1.3E-14 4.6E-19 134.6 -0.0 113 85-239 95-207 (486)
69 1vr9_A CBS domain protein/ACT 99.3 1.9E-11 6.5E-16 101.2 10.3 162 20-222 10-173 (213)
70 3ghd_A A cystathionine beta-sy 99.2 1.8E-11 6.2E-16 83.7 6.5 69 95-195 2-70 (70)
71 4esy_A CBS domain containing m 99.0 2.5E-10 8.5E-15 90.7 5.8 60 179-238 15-74 (170)
72 3fio_A A cystathionine beta-sy 99.0 8.3E-10 2.8E-14 74.4 6.5 69 95-195 2-70 (70)
73 3gby_A Uncharacterized protein 98.8 1.5E-08 5.1E-13 76.3 9.3 106 32-146 14-124 (128)
74 3jtf_A Magnesium and cobalt ef 98.8 1.8E-08 6E-13 76.1 9.6 102 32-146 16-124 (129)
75 3ghd_A A cystathionine beta-sy 98.8 8.2E-09 2.8E-13 70.3 6.6 48 192-240 2-49 (70)
76 3lv9_A Putative transporter; C 98.8 1.3E-08 4.4E-13 78.6 8.2 63 179-241 20-85 (148)
77 3nqr_A Magnesium and cobalt ef 98.8 2.6E-08 9E-13 74.8 9.6 102 33-145 15-123 (127)
78 3l2b_A Probable manganase-depe 98.8 1.2E-08 4.2E-13 85.6 8.1 62 180-241 5-66 (245)
79 3kpb_A Uncharacterized protein 98.8 7.7E-09 2.6E-13 76.9 6.1 58 183-240 2-59 (122)
80 3lfr_A Putative metal ION tran 98.8 2.7E-08 9.2E-13 75.9 9.2 105 32-146 14-125 (136)
81 3lhh_A CBS domain protein; str 98.8 1.1E-08 3.9E-13 81.2 7.1 62 179-240 39-103 (172)
82 3k2v_A Putative D-arabinose 5- 98.8 1.9E-08 6.5E-13 77.8 8.0 60 181-240 27-88 (149)
83 4fry_A Putative signal-transdu 98.8 2E-08 7E-13 78.1 7.9 108 32-147 22-134 (157)
84 3hf7_A Uncharacterized CBS-dom 98.8 1.3E-08 4.6E-13 77.0 6.6 106 32-146 13-125 (130)
85 2o16_A Acetoin utilization pro 98.7 2.1E-08 7.2E-13 78.6 7.6 60 181-240 4-63 (160)
86 2d4z_A Chloride channel protei 98.7 3.5E-08 1.2E-12 83.7 9.1 63 180-242 11-75 (250)
87 2rih_A Conserved protein with 98.7 2.9E-08 9.8E-13 75.9 7.8 60 181-240 4-65 (141)
88 2yzi_A Hypothetical protein PH 98.7 3.1E-08 1.1E-12 75.2 7.8 58 180-237 5-62 (138)
89 4gqw_A CBS domain-containing p 98.7 3E-08 1E-12 76.2 7.7 108 33-147 17-142 (152)
90 3fv6_A YQZB protein; CBS domai 98.7 4.8E-08 1.6E-12 76.4 8.6 61 178-239 13-73 (159)
91 2ef7_A Hypothetical protein ST 98.7 4.8E-08 1.6E-12 73.7 8.1 60 181-241 3-62 (133)
92 2p9m_A Hypothetical protein MJ 98.7 3.7E-08 1.3E-12 74.7 7.4 60 180-239 6-66 (138)
93 1pbj_A Hypothetical protein; s 98.7 3.2E-08 1.1E-12 73.7 6.9 57 183-240 2-58 (125)
94 3fio_A A cystathionine beta-sy 98.7 4E-08 1.4E-12 66.0 6.6 50 191-241 1-50 (70)
95 3k6e_A CBS domain protein; str 98.7 2.4E-08 8.3E-13 78.4 6.1 60 182-241 15-76 (156)
96 3ctu_A CBS domain protein; str 98.7 2.9E-08 9.8E-13 77.2 6.0 60 181-240 14-75 (156)
97 1yav_A Hypothetical protein BS 98.7 3.4E-08 1.2E-12 77.1 6.3 62 179-240 11-74 (159)
98 3i8n_A Uncharacterized protein 98.7 2.3E-08 8E-13 75.4 5.1 61 181-241 5-68 (130)
99 3kxr_A Magnesium transporter, 98.6 1E-07 3.5E-12 78.2 9.2 106 32-146 63-172 (205)
100 3lqn_A CBS domain protein; csg 98.6 2.9E-08 9.9E-13 76.6 5.4 60 180-239 13-74 (150)
101 2emq_A Hypothetical conserved 98.6 4E-08 1.4E-12 76.3 6.3 60 180-239 9-70 (157)
102 3sl7_A CBS domain-containing p 98.6 4.3E-08 1.5E-12 77.7 6.4 108 32-146 15-154 (180)
103 3fhm_A Uncharacterized protein 98.6 4E-08 1.4E-12 77.3 6.2 64 178-241 20-86 (165)
104 3oi8_A Uncharacterized protein 98.6 8E-08 2.7E-12 75.0 7.8 100 32-143 49-155 (156)
105 2pfi_A Chloride channel protei 98.6 6E-08 2.1E-12 75.6 7.0 61 180-240 11-73 (164)
106 2nyc_A Nuclear protein SNF4; b 98.6 9.3E-08 3.2E-12 72.8 7.7 60 181-240 7-69 (144)
107 2rc3_A CBS domain; in SITU pro 98.6 8.3E-08 2.8E-12 72.6 7.3 107 32-146 18-129 (135)
108 3ocm_A Putative membrane prote 98.6 1.7E-07 6E-12 74.7 8.9 62 179-240 33-97 (173)
109 1pvm_A Conserved hypothetical 98.6 1.1E-07 3.8E-12 76.2 7.7 59 181-239 8-66 (184)
110 2uv4_A 5'-AMP-activated protei 98.6 1.4E-07 4.9E-12 73.0 7.9 109 31-146 29-149 (152)
111 3usb_A Inosine-5'-monophosphat 98.6 7.8E-07 2.7E-11 82.8 14.1 103 32-146 122-232 (511)
112 1y5h_A Hypothetical protein RV 98.6 9.6E-08 3.3E-12 72.0 6.5 106 32-145 17-128 (133)
113 3oco_A Hemolysin-like protein 98.5 6.5E-08 2.2E-12 75.1 5.1 62 180-241 18-83 (153)
114 1o50_A CBS domain-containing p 98.5 1.8E-07 6.2E-12 72.8 7.3 60 179-239 13-73 (157)
115 2j9l_A Chloride channel protei 98.5 1.7E-07 5.8E-12 74.6 6.6 62 180-241 9-78 (185)
116 1me8_A Inosine-5'-monophosphat 98.5 3.9E-08 1.3E-12 91.4 2.6 104 32-145 106-218 (503)
117 2oux_A Magnesium transporter; 98.4 4.5E-07 1.5E-11 78.1 8.0 106 32-146 146-257 (286)
118 2yvy_A MGTE, Mg2+ transporter 98.4 4.7E-07 1.6E-11 77.5 7.4 106 32-146 144-255 (278)
119 3pc3_A CG1753, isoform A; CBS, 98.4 5.7E-07 2E-11 84.0 7.5 61 181-241 383-445 (527)
120 2zy9_A Mg2+ transporter MGTE; 98.2 2.5E-06 8.5E-11 78.7 6.7 106 32-146 164-275 (473)
121 3org_A CMCLC; transporter, tra 98.1 4.5E-06 1.5E-10 79.6 7.2 54 84-145 569-622 (632)
122 4fxs_A Inosine-5'-monophosphat 98.0 1.1E-05 3.7E-10 74.8 8.6 104 31-145 97-206 (496)
123 2cu0_A Inosine-5'-monophosphat 98.0 2E-06 6.8E-11 79.5 3.4 58 81-145 148-205 (486)
124 4avf_A Inosine-5'-monophosphat 98.0 1.1E-05 3.8E-10 74.6 7.7 102 33-145 98-204 (490)
125 4af0_A Inosine-5'-monophosphat 97.9 1.6E-06 5.4E-11 80.0 0.0 58 81-145 198-255 (556)
126 1vrd_A Inosine-5'-monophosphat 97.9 2.1E-05 7E-10 72.8 7.0 104 32-146 104-213 (494)
127 1jcn_A Inosine monophosphate d 97.8 2.1E-05 7.2E-10 73.1 5.4 105 33-146 118-231 (514)
128 1zfj_A Inosine monophosphate d 97.6 0.00011 3.7E-09 67.8 7.0 53 184-236 92-146 (491)
129 1tif_A IF3-N, translation init 59.4 21 0.00071 24.0 5.2 22 216-237 16-37 (78)
130 2lrn_A Thiol:disulfide interch 49.9 26 0.00088 25.4 5.0 41 206-246 103-144 (152)
131 3or5_A Thiol:disulfide interch 35.4 1.2E+02 0.0041 21.6 7.3 35 211-245 115-153 (165)
132 3by8_A Sensor protein DCUS; hi 35.3 18 0.00061 26.6 2.0 28 215-242 110-137 (142)
133 3ha9_A Uncharacterized thiored 34.4 99 0.0034 22.3 6.2 32 211-242 129-163 (165)
134 1tif_A IF3-N, translation init 33.6 63 0.0022 21.6 4.3 25 121-145 13-37 (78)
135 3raz_A Thioredoxin-related pro 33.5 68 0.0023 22.9 5.1 52 194-245 85-142 (151)
136 3ia1_A THIO-disulfide isomeras 31.5 31 0.0011 24.8 2.8 48 200-247 97-148 (154)
137 1p0z_A Sensor kinase CITA; tra 30.0 39 0.0013 24.2 3.1 17 215-231 105-121 (131)
138 1ttz_A Conserved hypothetical 29.0 22 0.00074 24.0 1.4 35 209-244 42-78 (87)
139 3eyt_A Uncharacterized protein 28.4 77 0.0026 22.7 4.6 43 203-245 108-154 (158)
140 3fan_A Non-structural protein; 27.9 29 0.001 27.9 2.2 23 211-233 124-146 (213)
141 2kuc_A Putative disulphide-iso 26.6 65 0.0022 22.3 3.8 45 201-245 75-123 (130)
142 3drn_A Peroxiredoxin, bacterio 25.7 1.1E+02 0.0038 22.1 5.1 32 213-244 111-150 (161)
143 1svj_A Potassium-transporting 25.3 50 0.0017 25.0 3.0 34 201-235 121-154 (156)
144 2ju5_A Thioredoxin disulfide i 25.0 1.1E+02 0.0036 22.3 4.9 40 204-243 108-152 (154)
145 3fz4_A Putative arsenate reduc 24.8 90 0.0031 22.2 4.2 93 95-228 7-111 (120)
146 2w5e_A Putative serine proteas 24.6 44 0.0015 25.4 2.6 23 209-231 122-144 (163)
147 3lwa_A Secreted thiol-disulfid 24.4 2.1E+02 0.0072 20.9 7.7 32 213-244 147-182 (183)
148 3tjo_A Serine protease HTRA1; 24.2 43 0.0015 26.8 2.6 20 212-231 187-206 (231)
149 2h30_A Thioredoxin, peptide me 23.9 78 0.0027 22.8 3.9 40 206-245 115-158 (164)
150 1lu4_A Soluble secreted antige 23.9 47 0.0016 23.0 2.6 37 205-241 92-134 (136)
151 2qkp_A Uncharacterized protein 23.4 41 0.0014 24.9 2.2 22 122-143 109-131 (151)
152 4evm_A Thioredoxin family prot 23.1 1.1E+02 0.0039 20.6 4.6 38 204-241 96-137 (138)
153 1zzo_A RV1677; thioredoxin fol 22.9 52 0.0018 22.6 2.6 36 207-242 96-134 (136)
154 3kcm_A Thioredoxin family prot 22.9 94 0.0032 22.0 4.2 42 205-246 99-146 (154)
155 3lgi_A Protease DEGS; stress-s 22.5 44 0.0015 26.7 2.4 21 211-231 173-193 (237)
156 2f9s_A Thiol-disulfide oxidore 21.7 1.1E+02 0.0036 21.7 4.2 38 208-245 99-140 (151)
157 1kng_A Thiol:disulfide interch 21.7 1.2E+02 0.004 21.5 4.5 38 208-245 113-154 (156)
158 1zof_A Alkyl hydroperoxide-red 21.2 84 0.0029 23.8 3.7 34 212-245 122-163 (198)
159 3kh7_A Thiol:disulfide interch 20.9 1.2E+02 0.0042 22.4 4.6 41 205-245 125-169 (176)
160 3sti_A Protease DEGQ; serine p 20.9 55 0.0019 26.6 2.6 21 211-231 184-204 (245)
161 3tjo_A Serine protease HTRA1; 20.7 54 0.0018 26.2 2.5 20 120-139 187-206 (231)
162 3k6y_A Serine protease, possib 20.7 56 0.0019 26.0 2.6 21 212-232 181-201 (237)
163 2as9_A Serine protease; trypsi 20.5 51 0.0018 25.7 2.3 20 212-231 156-175 (210)
No 1
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=99.91 E-value=2.7e-24 Score=172.96 Aligned_cols=159 Identities=77% Similarity=1.218 Sum_probs=129.5
Q ss_pred CceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCC
Q 025613 82 VYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 161 (250)
Q Consensus 82 ~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~ 161 (250)
.++++++|++..+++++.+++++.+| ++.|.+++++++||+|++|+++|+|+..||+++....+........++.
T Consensus 3 ~~~v~dim~~~~~~~~v~~~~~l~~a-----~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~ 77 (180)
T 3sl7_A 3 GYTVGDFMTPRQNLHVVKPSTSVDDA-----LELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPD 77 (180)
T ss_dssp CCBHHHHSEEGGGCCCBCTTSBHHHH-----HHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC----------------
T ss_pred ceeHHHhcCCCCCceeeCCCCcHHHH-----HHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCccccccc
Confidence 46899999876568999999999999 9999999999999999999999999999999765544444445556667
Q ss_pred cccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhh
Q 025613 162 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 241 (250)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~ 241 (250)
..+.|..|.+...........++.++|.++++++++++++.+|+++|.+++++++||+|++|+++|+||++||++++.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~~ 157 (180)
T 3sl7_A 78 VDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQI 157 (180)
T ss_dssp ---CCCSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHH
Confidence 78889999888887777778899999999999999999999999999999999999999899999999999999999887
Q ss_pred hhhh
Q 025613 242 KHAT 245 (250)
Q Consensus 242 ~~~~ 245 (250)
.+..
T Consensus 158 ~~~~ 161 (180)
T 3sl7_A 158 KRNA 161 (180)
T ss_dssp HHTC
T ss_pred hhhh
Confidence 7654
No 2
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=99.89 E-value=5.7e-23 Score=160.39 Aligned_cols=148 Identities=86% Similarity=1.272 Sum_probs=118.2
Q ss_pred CCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCC
Q 025613 81 GVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP 160 (250)
Q Consensus 81 ~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~ 160 (250)
+.++++++|++..+++++++++++.++ ++.|.+++++++||+|++|+++|+|+..||++++..
T Consensus 3 ~~~~v~~im~~~~~~~~v~~~~~~~~a-----~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~------------ 65 (152)
T 4gqw_A 3 GVYTVGEFMTKKEDLHVVKPTTTVDEA-----LELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSG------------ 65 (152)
T ss_dssp CCSBGGGTSEESTTCCCBCTTSBHHHH-----HHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC--------------
T ss_pred ceEEhhhccCCCCCCeEECCCCcHHHH-----HHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcc------------
Confidence 457899999886568999999999999 999999999999999998999999999999865321
Q ss_pred CcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 161 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
...|..+.+...........++.++|.++++++++++++.+|++.|.+++.+.+||+|++|+++|+||.+||++++.+
T Consensus 66 --~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~ 143 (152)
T 4gqw_A 66 --DSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQ 143 (152)
T ss_dssp ----CCHHHHHHHTC-----CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred --cCcccchHHHHHHHHHhccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHh
Confidence 123444444444333455678999999999999999999999999999999999999988999999999999999998
Q ss_pred hhhhhhc
Q 025613 241 IKHATEM 247 (250)
Q Consensus 241 ~~~~~~~ 247 (250)
......+
T Consensus 144 ~~~~~~~ 150 (152)
T 4gqw_A 144 IKRSGDR 150 (152)
T ss_dssp -------
T ss_pred ccccccC
Confidence 7766544
No 3
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.89 E-value=1.3e-23 Score=168.48 Aligned_cols=149 Identities=24% Similarity=0.308 Sum_probs=117.2
Q ss_pred CCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCC
Q 025613 80 SGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF 159 (250)
Q Consensus 80 ~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~ 159 (250)
+..++|+|+|++ +++++.+++++.+| ++.|.+++++++||+|++|+++|+||.+||++......... .
T Consensus 15 l~~~~V~diM~~--~v~~v~~~~tl~~a-----~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~-----~ 82 (170)
T 4esy_A 15 IRQVPIRDILTS--PVVTVREDDTLDAV-----AKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYE-----A 82 (170)
T ss_dssp HHTSBGGGGCCS--CCCCEETTSBHHHH-----HHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHH-----H
T ss_pred HcCCCHHHhcCC--CCcEECCcCcHHHH-----HHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccc-----h
Confidence 356789999998 89999999999999 99999999999999999999999999999987532111000 0
Q ss_pred CCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613 160 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 239 (250)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~ 239 (250)
.......................++.++|+++++++++++++.+|+++|.+++++++||+| +|+++|+||+.||++++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~~Dil~~l~ 161 (170)
T 4esy_A 83 SEILSRAIPAPEVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTRRDLLKLLL 161 (170)
T ss_dssp HHHHTTTSCHHHHHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHTTTSC
T ss_pred hhhhhhccchhhHHhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence 0000000011112223334567889999999999999999999999999999999999999 699999999999999875
Q ss_pred hh
Q 025613 240 QI 241 (250)
Q Consensus 240 ~~ 241 (250)
..
T Consensus 162 ~~ 163 (170)
T 4esy_A 162 LE 163 (170)
T ss_dssp CC
T ss_pred hc
Confidence 43
No 4
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=99.88 E-value=7.2e-23 Score=162.55 Aligned_cols=132 Identities=25% Similarity=0.342 Sum_probs=113.2
Q ss_pred eeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcc
Q 025613 84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 163 (250)
Q Consensus 84 ~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~ 163 (250)
+++++|+|+.++.++.+++|+.+| ++.|.+++++++||+|++|+++|+||.+|+++++...+.
T Consensus 16 ~~~~iM~P~~~v~~v~~~~t~~~a-----~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~------------ 78 (156)
T 3k6e_A 16 QEETFLTPAKNLAVLIDTHNADHA-----TLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDL------------ 78 (156)
T ss_dssp TGGGGEEETTSSCCEETTSBHHHH-----HHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTC------------
T ss_pred cHHHhCcchhHeEEECCcCCHHHH-----HHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhccc------------
Confidence 688999998899999999999999 999999999999999988999999999999876432210
Q ss_pred cchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhhhh
Q 025613 164 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 243 (250)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~~~ 243 (250)
........++.++|.++++++++++++.+|++.|.+++ .+||||++|+++|+||++||++++....+
T Consensus 79 -----------~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~l~GiiT~~Dil~~~~~~~~ 145 (156)
T 3k6e_A 79 -----------SQEIMADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAVNALLH 145 (156)
T ss_dssp -----------CHHHHTTSBGGGTCBCSCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSBEEEEEEHHHHHHHHHHHSC
T ss_pred -----------ccccccccCHHHhhcCCceecccccHHHHHHHHHHHcC--CeEEEecCCEEEEEEEHHHHHHHHHHHhc
Confidence 00123467899999999999999999999999998765 49999999999999999999999988765
Q ss_pred hh
Q 025613 244 AT 245 (250)
Q Consensus 244 ~~ 245 (250)
..
T Consensus 146 ~~ 147 (156)
T 3k6e_A 146 DF 147 (156)
T ss_dssp C-
T ss_pred cc
Confidence 54
No 5
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=99.88 E-value=5.5e-22 Score=155.13 Aligned_cols=128 Identities=17% Similarity=0.276 Sum_probs=114.7
Q ss_pred CCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCCC
Q 025613 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADN 156 (250)
Q Consensus 78 ~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~~ 156 (250)
..+...+++++|+++.+++++++++++.++ ++.|.+++++++||+|++ |+++|+|+.+||++++.
T Consensus 18 ~~l~~~~v~diM~~~~~~~~v~~~~~~~~a-----~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~--------- 83 (148)
T 3lv9_A 18 FEFEEKKIREIMVPRTDMVCIYESDSEEKI-----LAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKI--------- 83 (148)
T ss_dssp CGGGTCBGGGTSEETTTCCCEETTCCHHHH-----HHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHH---------
T ss_pred hccCCCCHHHccccHHHeEEECCCCCHHHH-----HHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHh---------
Confidence 355678999999986679999999999999 999999999999999987 89999999999997532
Q ss_pred CCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 157 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
.....++.++| ++++++++++++.+|++.|.+++.+.+||+|++|+++|+||+.||++
T Consensus 84 ---------------------~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~ 141 (148)
T 3lv9_A 84 ---------------------NENKIELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILE 141 (148)
T ss_dssp ---------------------HHSCCCGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHH
T ss_pred ---------------------cCCCccHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHH
Confidence 11267899999 88999999999999999999999999999998899999999999999
Q ss_pred HHHhh
Q 025613 237 AALQI 241 (250)
Q Consensus 237 ~l~~~ 241 (250)
++...
T Consensus 142 ~l~~~ 146 (148)
T 3lv9_A 142 EIVGE 146 (148)
T ss_dssp HHHHT
T ss_pred HHhCc
Confidence 98753
No 6
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=99.88 E-value=5.6e-22 Score=151.81 Aligned_cols=124 Identities=22% Similarity=0.361 Sum_probs=109.4
Q ss_pred CCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCCCCCC
Q 025613 81 GVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMF 159 (250)
Q Consensus 81 ~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~~~~~ 159 (250)
...+++++|++..+++++++++++.++ ++.|.+++++++||+|++ |+++|+|+.+||+++..
T Consensus 3 ~~~~v~diM~~~~~~~~v~~~~~~~~a-----~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~------------ 65 (129)
T 3jtf_A 3 AERTVADIMVPRSRMDLLDISQPLPQL-----LATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYML------------ 65 (129)
T ss_dssp -CCBHHHHCEEGGGCCCEETTSCHHHH-----HHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGT------------
T ss_pred CCCCHHHhCccHHHeEEECCCCCHHHH-----HHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhc------------
Confidence 356899999965588999999999999 999999999999999985 89999999999997532
Q ss_pred CCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613 160 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 239 (250)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~ 239 (250)
....++.++|.+ ++++++++++.+|++.|.+++.+.+||+|++|+++|+||++||++++.
T Consensus 66 -------------------~~~~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~ 125 (129)
T 3jtf_A 66 -------------------EPALDIRSLVRP-AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIV 125 (129)
T ss_dssp -------------------CTTSCGGGGCBC-CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHH
T ss_pred -------------------cCCcCHHHHhCC-CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence 135678999965 889999999999999999999999999998899999999999999987
Q ss_pred hh
Q 025613 240 QI 241 (250)
Q Consensus 240 ~~ 241 (250)
..
T Consensus 126 ge 127 (129)
T 3jtf_A 126 GD 127 (129)
T ss_dssp HT
T ss_pred CC
Confidence 53
No 7
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=99.88 E-value=2.4e-22 Score=153.89 Aligned_cols=126 Identities=20% Similarity=0.292 Sum_probs=109.0
Q ss_pred CCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCCCCC
Q 025613 80 SGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSM 158 (250)
Q Consensus 80 ~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~~~~ 158 (250)
+...+++++|++..+++++++++++.+| ++.|.+++++++||+|++ |+++|+|+.+||+++...
T Consensus 3 l~~~~v~~iM~~~~~v~~v~~~~~~~~a-----~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~---------- 67 (130)
T 3i8n_A 3 AQDVPVTQVMTPRPVVFRVDATMTINEF-----LDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQS---------- 67 (130)
T ss_dssp ----CCTTTSCCBCCCCEEETTSBHHHH-----HHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHT----------
T ss_pred cCcCCHhhCCCcHHHEEEEcCCCCHHHH-----HHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhc----------
Confidence 4567899999975577899999999999 999999999999999987 899999999999976321
Q ss_pred CCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613 159 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 238 (250)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l 238 (250)
.....++.++|. +++++++++++.+|++.|.+++.+.+||+|++|+++|+||+.||++++
T Consensus 68 -------------------~~~~~~v~~~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l 127 (130)
T 3i8n_A 68 -------------------GSGQKQLGAVMR-PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHL 127 (130)
T ss_dssp -------------------TTTTSBHHHHSE-ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred -------------------CCCcCCHHHHhc-CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHH
Confidence 123568999995 588999999999999999999999999999889999999999999987
Q ss_pred Hh
Q 025613 239 LQ 240 (250)
Q Consensus 239 ~~ 240 (250)
..
T Consensus 128 ~g 129 (130)
T 3i8n_A 128 VG 129 (130)
T ss_dssp HT
T ss_pred cC
Confidence 53
No 8
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=99.87 E-value=7.3e-22 Score=158.75 Aligned_cols=129 Identities=19% Similarity=0.211 Sum_probs=111.7
Q ss_pred CCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCCC
Q 025613 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADN 156 (250)
Q Consensus 78 ~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~~ 156 (250)
..+...+++++|++..+++++++++++.++ ++.|.+++++++||+|++ |+++|+|+.+||+++..
T Consensus 37 ~~l~~~~v~diM~~~~~~~~v~~~~~v~~a-----~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~--------- 102 (172)
T 3lhh_A 37 FRLDERTISSLMVPRSDIVFLDLNLPLDAN-----LRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESI--------- 102 (172)
T ss_dssp ------CTTTTSEEGGGCCCEETTSCHHHH-----HHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHH---------
T ss_pred hccCCCCHHHhCccHHHeEEEcCCCCHHHH-----HHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHh---------
Confidence 456778999999954489999999999999 999999999999999987 99999999999997632
Q ss_pred CCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 157 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
.....++.++| ++++++++++++.+|++.|.+++++.+||+|++|+++|+||+.||++
T Consensus 103 ---------------------~~~~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~ 160 (172)
T 3lhh_A 103 ---------------------AGERLELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMD 160 (172)
T ss_dssp ---------------------TTCCCCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHH
T ss_pred ---------------------hcCcccHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHH
Confidence 11257899999 88999999999999999999999999999998899999999999999
Q ss_pred HHHhhh
Q 025613 237 AALQIK 242 (250)
Q Consensus 237 ~l~~~~ 242 (250)
++....
T Consensus 161 ~l~~~~ 166 (172)
T 3lhh_A 161 ALTGEF 166 (172)
T ss_dssp HHHTTC
T ss_pred HHhCCC
Confidence 987644
No 9
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=99.87 E-value=2.9e-22 Score=153.78 Aligned_cols=125 Identities=14% Similarity=0.126 Sum_probs=108.5
Q ss_pred ceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeC-CCcEEEEEehHHHHhhhhccCCCCCCCCCCCC
Q 025613 83 YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLALDSISGSGRADNSMFPE 161 (250)
Q Consensus 83 ~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~-~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~ 161 (250)
++++++|++..+++++++++++.+| ++.|.+++++++||+++ +|+++|+|+.+||+++.....
T Consensus 2 ~~v~~iM~~~~~~~~v~~~~~v~~a-----~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~----------- 65 (130)
T 3hf7_A 2 VSVNDIMVPRNEIVGIDINDDWKSI-----VRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK----------- 65 (130)
T ss_dssp CBHHHHSEEGGGCCEEETTSCHHHH-----HHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSS-----------
T ss_pred cCHHHhCccHHHEEEEcCCCCHHHH-----HHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccC-----------
Confidence 5789999865579999999999999 99999999999999975 589999999999998643111
Q ss_pred cccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 162 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
.....++.++| ++++++++++++.+|++.|.+++.+.+||+|++|+++|+||++||++++..
T Consensus 66 ----------------~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~g 127 (130)
T 3hf7_A 66 ----------------EFTKEIMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVG 127 (130)
T ss_dssp ----------------CCCHHHHHHHS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHHC
T ss_pred ----------------ccchhhHHHhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHhC
Confidence 01124688889 668999999999999999999999999999989999999999999999865
No 10
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=99.87 E-value=3.8e-22 Score=152.19 Aligned_cols=123 Identities=23% Similarity=0.408 Sum_probs=108.2
Q ss_pred CceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCCCCCCC
Q 025613 82 VYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFP 160 (250)
Q Consensus 82 ~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~ 160 (250)
.++++++|++..+++++++++++.++ ++.|.+++++++||+|++ |+++|+|+.+||++++..
T Consensus 2 ~~~v~diM~~~~~~~~v~~~~~~~~a-----~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~------------ 64 (127)
T 3nqr_A 2 DQRVRDIMIPRSQMITLKRNQTLDEC-----LDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS------------ 64 (127)
T ss_dssp -CBHHHHSEEGGGCCCEETTCCHHHH-----HHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGST------------
T ss_pred CcCHHHhcccHHHeEEEcCCCCHHHH-----HHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhc------------
Confidence 45899999973359999999999999 999999999999999987 899999999999976321
Q ss_pred CcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613 161 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 239 (250)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~ 239 (250)
.....++.++|.+ ++++++++++.+|++.|.+++.+.+||+|++|+++|+||+.||++++.
T Consensus 65 -----------------~~~~~~v~~~m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l~ 125 (127)
T 3nqr_A 65 -----------------DAEAFSMDKVLRT-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIV 125 (127)
T ss_dssp -----------------TCCCCCHHHHCBC-CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC-
T ss_pred -----------------cCCCCCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence 1235689999966 889999999999999999999999999998999999999999999864
No 11
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=99.87 E-value=3.5e-22 Score=154.43 Aligned_cols=127 Identities=23% Similarity=0.318 Sum_probs=109.2
Q ss_pred CceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCCCCCCC
Q 025613 82 VYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFP 160 (250)
Q Consensus 82 ~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~ 160 (250)
.++++++|+++.++.++++++++.+| ++.|.+++++++||++++ |+++|+|+.+||++++...
T Consensus 2 ~~~v~~iM~~~~~~~~v~~~~~v~~a-----~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~----------- 65 (136)
T 3lfr_A 2 DLQVRDIMVPRSQMISIKATQTPREF-----LPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKA----------- 65 (136)
T ss_dssp -CBHHHHSEEGGGCCCEETTCCHHHH-----HHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSS-----------
T ss_pred CCChHhccccHHHEEEEcCCCCHHHH-----HHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhc-----------
Confidence 45899999965578999999999999 999999999999999987 8999999999999764211
Q ss_pred CcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 161 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
.....++.++|.+ ++++++++++.+|++.|.+++++.+||+|++|+++|+||++||++++..
T Consensus 66 -----------------~~~~~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~~ 127 (136)
T 3lfr_A 66 -----------------DGDSDDVKKLLRP-ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIVG 127 (136)
T ss_dssp -----------------SGGGCCGGGTCBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC--
T ss_pred -----------------cCCCcCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence 1235689999976 8999999999999999999999999999989999999999999998775
Q ss_pred hh
Q 025613 241 IK 242 (250)
Q Consensus 241 ~~ 242 (250)
..
T Consensus 128 ~~ 129 (136)
T 3lfr_A 128 DI 129 (136)
T ss_dssp --
T ss_pred CC
Confidence 43
No 12
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=99.87 E-value=1.4e-21 Score=154.75 Aligned_cols=136 Identities=23% Similarity=0.295 Sum_probs=118.3
Q ss_pred CCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCC
Q 025613 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM 158 (250)
Q Consensus 79 ~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~ 158 (250)
.+..++++++|++ . +++.+++++.+| ++.|.+++++++||+|++|+++|+|+.+||+++.....
T Consensus 13 ~l~~~~v~~im~~--~-~~v~~~~~~~~a-----~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~-------- 76 (159)
T 3fv6_A 13 KLKKLQVKDFQSI--P-VVIHENVSVYDA-----ICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQ-------- 76 (159)
T ss_dssp HHTTCBGGGSCBC--C-CEEETTSBHHHH-----HHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSCS--------
T ss_pred HHhhCCHHHHcCC--C-EEECCCCcHHHH-----HHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhccC--------
Confidence 4466799999987 4 599999999999 99999999999999998899999999999997642111
Q ss_pred CCCcccchhchHHHHHHHhccCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCC---cEEEEEehHH
Q 025613 159 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADG---KLVGIITRGN 233 (250)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g---~~vGiIt~~D 233 (250)
.....++.++|.+ +++++.+++++.+|++.|.+++++.+||+|++| +++|+||+.|
T Consensus 77 -------------------~~~~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~d 137 (159)
T 3fv6_A 77 -------------------ELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTN 137 (159)
T ss_dssp -------------------CTTTCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHH
T ss_pred -------------------cccCcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHH
Confidence 2245789999998 899999999999999999999999999999877 9999999999
Q ss_pred HHHHHHhhhhhhhcCC
Q 025613 234 VVRAALQIKHATEMGA 249 (250)
Q Consensus 234 il~~l~~~~~~~~~~~ 249 (250)
|++++.++......+.
T Consensus 138 il~~l~~~~~~~~~~~ 153 (159)
T 3fv6_A 138 MTKILVSLSENEILLQ 153 (159)
T ss_dssp HHHHHHHHHTTCCC--
T ss_pred HHHHHHHHhhcchhhh
Confidence 9999999988766554
No 13
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=99.87 E-value=1.3e-21 Score=147.57 Aligned_cols=119 Identities=24% Similarity=0.412 Sum_probs=108.9
Q ss_pred eeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcc
Q 025613 84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 163 (250)
Q Consensus 84 ~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~ 163 (250)
+++++|++ +++++++++++.++ ++.|.+++++.+||+|++|+++|+|+..||++++.
T Consensus 2 ~v~~im~~--~~~~v~~~~~~~~a-----~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~---------------- 58 (122)
T 3kpb_A 2 LVKDILSK--PPITAHSNISIMEA-----AKILIKHNINHLPIVDEHGKLVGIITSWDIAKALA---------------- 58 (122)
T ss_dssp BHHHHCCS--CCCCEETTSBHHHH-----HHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHH----------------
T ss_pred chHHhhCC--CCEEeCCCCcHHHH-----HHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHH----------------
Confidence 68899998 89999999999999 99999999999999999999999999999997632
Q ss_pred cchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 164 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
....++.++|.++++++++++++.+|++.|.+.+.+++||+|++|+++|+||.+||++++.+
T Consensus 59 ---------------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~~ 120 (122)
T 3kpb_A 59 ---------------QNKKTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGG 120 (122)
T ss_dssp ---------------TTCCBGGGTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC-
T ss_pred ---------------hcccCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhhc
Confidence 12348999999999999999999999999999999999999988999999999999998764
No 14
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=99.86 E-value=3.3e-21 Score=147.64 Aligned_cols=129 Identities=26% Similarity=0.403 Sum_probs=113.4
Q ss_pred CCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCC
Q 025613 81 GVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP 160 (250)
Q Consensus 81 ~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~ 160 (250)
...+++++|.+ +++++++++++.++ ++.|.+++++++||+| +|+++|+|+..|+.+++...
T Consensus 2 ~~~~v~~im~~--~~~~v~~~~~~~~a-----~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~----------- 62 (133)
T 2ef7_A 2 EEEIVKEYMKT--QVISVTKDAKLNDI-----AKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKG----------- 62 (133)
T ss_dssp CCCBGGGTSBC--SCCEEETTCBHHHH-----HHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTT-----------
T ss_pred CcccHHHhccC--CCEEECCCCcHHHH-----HHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhcC-----------
Confidence 45689999998 89999999999999 9999999999999999 89999999999998753211
Q ss_pred CcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 161 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
.....++.++|.++++++++++++.+|++.|.+.+.+.+||+|++|+++|+||+.||++++.+
T Consensus 63 -----------------~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~ 125 (133)
T 2ef7_A 63 -----------------KSLETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDD 125 (133)
T ss_dssp -----------------CCTTCBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred -----------------CCcccCHHHHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHH
Confidence 123578999999889999999999999999999999999999988999999999999999988
Q ss_pred hhhhh
Q 025613 241 IKHAT 245 (250)
Q Consensus 241 ~~~~~ 245 (250)
..++.
T Consensus 126 ~~~~l 130 (133)
T 2ef7_A 126 MFETM 130 (133)
T ss_dssp HC---
T ss_pred HHHHh
Confidence 76654
No 15
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=99.86 E-value=1.3e-21 Score=149.27 Aligned_cols=125 Identities=19% Similarity=0.206 Sum_probs=112.0
Q ss_pred CCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCC
Q 025613 81 GVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP 160 (250)
Q Consensus 81 ~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~ 160 (250)
..++++++|.+ +++++++++++.++ ++.|.+++++++||+|+ |+++|+|+.+||.++....
T Consensus 3 ~s~~v~~~m~~--~~~~v~~~~~~~~a-----~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~~~~----------- 63 (128)
T 3gby_A 3 ASVTFSYLAET--DYPVFTLGGSTADA-----ARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGRKGW----------- 63 (128)
T ss_dssp TTCBGGGGCBC--CSCCEETTSBHHHH-----HHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTCSSS-----------
T ss_pred cceEHHHhhcC--CcceECCCCCHHHH-----HHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHHhhC-----------
Confidence 45789999999 89999999999999 99999999999999998 9999999999999753211
Q ss_pred CcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 161 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
.....++.++|.++++++.+++++.+|++.|.+++.+.+||+|++|+++|+||+.|+++++.+
T Consensus 64 -----------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~~ 126 (128)
T 3gby_A 64 -----------------PTVKEKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLAE 126 (128)
T ss_dssp -----------------CCTTCBCCGGGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHHT
T ss_pred -----------------CcccCcHHHHccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence 112367999999999999999999999999999999999999989999999999999999876
Q ss_pred h
Q 025613 241 I 241 (250)
Q Consensus 241 ~ 241 (250)
.
T Consensus 127 ~ 127 (128)
T 3gby_A 127 R 127 (128)
T ss_dssp T
T ss_pred h
Confidence 4
No 16
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=99.86 E-value=1.4e-21 Score=152.83 Aligned_cols=138 Identities=21% Similarity=0.271 Sum_probs=115.3
Q ss_pred CCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCC
Q 025613 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM 158 (250)
Q Consensus 79 ~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~ 158 (250)
.+..++++++|++..+++++.+++++.+| ++.|.+++++++||+|++|+++|+|+.+||++++......
T Consensus 11 ~l~~~~v~~im~~~~~~~~v~~~~~l~~a-----~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~------ 79 (150)
T 3lqn_A 11 EFQQIFVKDLMISSEKVAHVQIGNGLEHA-----LLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERI------ 79 (150)
T ss_dssp HHHHCBHHHHSEEGGGSCCBCTTSBHHHH-----HHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCSSSB------
T ss_pred hhhcCChhhcccCCCceEEECCCCcHHHH-----HHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhhccc------
Confidence 34567999999964369999999999999 9999999999999999999999999999999864311100
Q ss_pred CCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613 159 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 238 (250)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l 238 (250)
. .......++.++|.++++++++++++.+|++.|.++++ +||+|++|+++|+||+.||++++
T Consensus 80 -~---------------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l 141 (150)
T 3lqn_A 80 -E---------------FERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLL 141 (150)
T ss_dssp -C---------------GGGGGGCBGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHH
T ss_pred -c---------------hhHHhcCCHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHH
Confidence 0 01224578999999999999999999999999999887 99999899999999999999999
Q ss_pred Hhhhhhh
Q 025613 239 LQIKHAT 245 (250)
Q Consensus 239 ~~~~~~~ 245 (250)
.+..++.
T Consensus 142 ~~~~~~~ 148 (150)
T 3lqn_A 142 NKKVRQH 148 (150)
T ss_dssp HHHC---
T ss_pred HHHhHhh
Confidence 8877654
No 17
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=99.86 E-value=7.1e-21 Score=146.64 Aligned_cols=129 Identities=26% Similarity=0.401 Sum_probs=113.7
Q ss_pred CCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh-hhhccCCCCCCCCC
Q 025613 80 SGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA-LDSISGSGRADNSM 158 (250)
Q Consensus 80 ~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~-~~~~~~~~~~~~~~ 158 (250)
+...+++++|++ +++++++++++.++ ++.|.+++++++||+|++|+++|+|+..||++ ++. .+
T Consensus 4 l~~~~v~~im~~--~~~~v~~~~~~~~a-----~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~-~~-------- 67 (138)
T 2yzi_A 4 DMKAPIKVYMTK--KLLGVKPSTSVQEA-----SRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIV-PG-------- 67 (138)
T ss_dssp CTTSBGGGTCBC--CCCEECTTSBHHHH-----HHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTT-TC--------
T ss_pred hhhhhHHHHhcC--CCeEECCCCcHHHH-----HHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHh-cC--------
Confidence 456789999998 89999999999999 99999999999999998899999999999974 321 11
Q ss_pred CCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613 159 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 238 (250)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l 238 (250)
.....++.++|.++++++++++++.+|++.|.+++.+++ |+|++|+++|+||..||++++
T Consensus 68 -------------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~ 127 (138)
T 2yzi_A 68 -------------------LPYDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEAS 127 (138)
T ss_dssp -------------------CCTTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHH
T ss_pred -------------------CcccCCHHHHhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHH
Confidence 123578999999999999999999999999999999999 999889999999999999998
Q ss_pred Hhhhhh
Q 025613 239 LQIKHA 244 (250)
Q Consensus 239 ~~~~~~ 244 (250)
.+..++
T Consensus 128 ~~~~~~ 133 (138)
T 2yzi_A 128 RRRLET 133 (138)
T ss_dssp HCCSCC
T ss_pred HHHHHh
Confidence 876544
No 18
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=99.85 E-value=1.4e-21 Score=153.91 Aligned_cols=127 Identities=23% Similarity=0.337 Sum_probs=111.3
Q ss_pred CCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEE-eC-CCcEEEEEehHHHHhhhhccCCCCCCCCC
Q 025613 81 GVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVI-DD-DWKLVGLVSDYDLLALDSISGSGRADNSM 158 (250)
Q Consensus 81 ~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vv-d~-~g~~~GiVt~~dL~~~~~~~~~~~~~~~~ 158 (250)
...+++++|+++.+++++++++++.+| ++.|.+++++++||+ ++ +|+++|+|+.+||++++.
T Consensus 18 ~~~~v~~iM~~~~~~~~v~~~~~~~~a-----~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~----------- 81 (153)
T 3oco_A 18 NDKVASDVMVDRTSMSVVDVDETIADA-----LLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQAR----------- 81 (153)
T ss_dssp HHCBHHHHSEEGGGCCCEETTSBHHHH-----HHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHH-----------
T ss_pred CCCEeeeEecchhheEEEcCCCCHHHH-----HHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHh-----------
Confidence 456899999865578999999999999 999999999999999 65 489999999999997532
Q ss_pred CCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613 159 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 238 (250)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l 238 (250)
.....++.++| ++++++.+++++.+|++.|.+++.+.+||+|++|+++|+||+.||++++
T Consensus 82 -------------------~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l 141 (153)
T 3oco_A 82 -------------------IDDKAKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEEL 141 (153)
T ss_dssp -------------------HHTTSBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHH
T ss_pred -------------------cCCCCcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHH
Confidence 11267899999 8899999999999999999999999999999889999999999999998
Q ss_pred Hhhhh
Q 025613 239 LQIKH 243 (250)
Q Consensus 239 ~~~~~ 243 (250)
.....
T Consensus 142 ~~~~~ 146 (153)
T 3oco_A 142 FGNLR 146 (153)
T ss_dssp HC---
T ss_pred hccCC
Confidence 86543
No 19
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=3.7e-21 Score=153.27 Aligned_cols=136 Identities=24% Similarity=0.358 Sum_probs=117.5
Q ss_pred CCCCCCceeccccccC-CceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCC
Q 025613 77 APSSGVYTVGDFMTTK-EELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRAD 155 (250)
Q Consensus 77 ~~~~~~~~v~~~m~~~-~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~ 155 (250)
...+..++++++|+++ .+++++.+++++.+| ++.|.++++..+||+|++|+++|+|+..||++++...+
T Consensus 18 ~~~l~~~~v~dim~~~~~~~~~v~~~~~l~~a-----~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~----- 87 (165)
T 3fhm_A 18 YFQGMATFVKDLLDRKGRDVVTVGPDVSIGEA-----AGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQG----- 87 (165)
T ss_dssp CCSSSSCBHHHHHHHHCSCCCEECTTSBHHHH-----HHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHG-----
T ss_pred hHhhhhcCHHHHhccCCCCCeEECCCCCHHHH-----HHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcC-----
Confidence 5677888999999962 368999999999999 99999999999999999999999999999997643211
Q ss_pred CCCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHH
Q 025613 156 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 235 (250)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil 235 (250)
......++.++|.++++++.+++++.+|++.|.+++.+++||+|+ |+++|+||+.||+
T Consensus 88 ---------------------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil 145 (165)
T 3fhm_A 88 ---------------------AASLQQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVV 145 (165)
T ss_dssp ---------------------GGGGTSBGGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHH
T ss_pred ---------------------CccccCCHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHH
Confidence 123467899999999999999999999999999999999999997 9999999999999
Q ss_pred HHHHhhhhh
Q 025613 236 RAALQIKHA 244 (250)
Q Consensus 236 ~~l~~~~~~ 244 (250)
+++.+....
T Consensus 146 ~~~~~~~~~ 154 (165)
T 3fhm_A 146 KARIGEIEA 154 (165)
T ss_dssp HHTTCC---
T ss_pred HHHHHHHHH
Confidence 998776544
No 20
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=99.85 E-value=6.6e-21 Score=153.71 Aligned_cols=127 Identities=18% Similarity=0.176 Sum_probs=110.9
Q ss_pred CCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCCCC
Q 025613 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNS 157 (250)
Q Consensus 79 ~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~~~ 157 (250)
.+...+++++|+++.+++++++++++.++ ++.|.+++++++||++++ |+++|+|+.+||+.++.
T Consensus 32 ~l~~~~v~diM~~~~~v~~v~~~~tv~ea-----~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~---------- 96 (173)
T 3ocm_A 32 TLAERSIRSIMTPRTDVSWVNIDDDAATI-----RQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLI---------- 96 (173)
T ss_dssp HHTTSCSTTTSEEGGGCCCEETTSCHHHH-----HHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHH----------
T ss_pred ccCCCCHHHhCCcHHHeEEEeCCCCHHHH-----HHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHh----------
Confidence 34667999999865579999999999999 999999999999999986 89999999999997532
Q ss_pred CCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613 158 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237 (250)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~ 237 (250)
.....++. +| ++++++++++++.+|++.|.+++.+.+||+|++|+++|+||+.||+++
T Consensus 97 --------------------~~~~~~v~-~~-~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~ 154 (173)
T 3ocm_A 97 --------------------TEGRVRRN-RL-RDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEA 154 (173)
T ss_dssp --------------------HHSSCCGG-GS-BCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHH
T ss_pred --------------------cCCcchhH-hc-CCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHH
Confidence 11245677 44 678999999999999999999999999999989999999999999999
Q ss_pred HHhhh
Q 025613 238 ALQIK 242 (250)
Q Consensus 238 l~~~~ 242 (250)
+....
T Consensus 155 l~~~i 159 (173)
T 3ocm_A 155 IAGEF 159 (173)
T ss_dssp HHCCC
T ss_pred HhCcC
Confidence 88644
No 21
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=99.85 E-value=9.1e-21 Score=150.37 Aligned_cols=137 Identities=28% Similarity=0.335 Sum_probs=114.2
Q ss_pred CceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCC
Q 025613 82 VYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 161 (250)
Q Consensus 82 ~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~ 161 (250)
.++++++|++ +++++.+++++.+| ++.|.+++++++||+|++|+++|+|+..||++++......
T Consensus 4 ~~~v~dim~~--~~~~v~~~~tl~~a-----~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~--------- 67 (160)
T 2o16_A 4 MIKVEDMMTR--HPHTLLRTHTLNDA-----KHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQR--------- 67 (160)
T ss_dssp CCBGGGTSEE--SCCCBCTTSBHHHH-----HHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC----------
T ss_pred cCcHHHHhcC--CCeEECCCCcHHHH-----HHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcc---------
Confidence 4689999998 89999999999999 9999999999999999889999999999999764321000
Q ss_pred cccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhh
Q 025613 162 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 241 (250)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~ 241 (250)
+. .........++.++|.++++++++++++.+|++.|.+.+.+.+||+|+ |+++|+||+.||++++.+.
T Consensus 68 -------~~---~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~~~ 136 (160)
T 2o16_A 68 -------SA---QGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAINL 136 (160)
T ss_dssp ------------------CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHHHH
T ss_pred -------cc---cccchhcccCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHHHH
Confidence 00 000123467899999999999999999999999999999999999996 9999999999999998876
Q ss_pred hhhh
Q 025613 242 KHAT 245 (250)
Q Consensus 242 ~~~~ 245 (250)
....
T Consensus 137 ~~~~ 140 (160)
T 2o16_A 137 LELQ 140 (160)
T ss_dssp HHHH
T ss_pred hccc
Confidence 6544
No 22
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=99.85 E-value=1.7e-20 Score=145.35 Aligned_cols=125 Identities=17% Similarity=0.187 Sum_probs=111.6
Q ss_pred ceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCC--cEEEEEehHHHHhhhhccCCCCCCCCCCC
Q 025613 83 YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDW--KLVGLVSDYDLLALDSISGSGRADNSMFP 160 (250)
Q Consensus 83 ~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g--~~~GiVt~~dL~~~~~~~~~~~~~~~~~~ 160 (250)
++++++|++ ++.++.+++++.++ ++.|.+++++.+||+|++| +++|+|+.+||++++...
T Consensus 5 ~~v~~im~~--~~~~v~~~~~~~~a-----~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~----------- 66 (141)
T 2rih_A 5 IRTSELLKR--PPVSLPETATIREV-----ATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQR----------- 66 (141)
T ss_dssp CBGGGGCCS--CCEEEETTCBHHHH-----HHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTT-----------
T ss_pred eEHHHHhcC--CCeEeCCCCcHHHH-----HHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcC-----------
Confidence 579999998 89999999999999 9999999999999999888 999999999999763211
Q ss_pred CcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 161 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
.....++.++|.+++++++++ ++.+|++.|.+.+.+.+||+|++|+++|+||+.||++++..
T Consensus 67 -----------------~~~~~~v~~~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~ 128 (141)
T 2rih_A 67 -----------------LDLDGPAMPIANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAI 128 (141)
T ss_dssp -----------------CCTTSBSGGGCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHHH
T ss_pred -----------------CCCCCCHHHHcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHHHH
Confidence 123578999999999999999 99999999999999999999988999999999999988776
Q ss_pred hhh
Q 025613 241 IKH 243 (250)
Q Consensus 241 ~~~ 243 (250)
...
T Consensus 129 ~~~ 131 (141)
T 2rih_A 129 LLE 131 (141)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 23
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=99.84 E-value=1.5e-20 Score=144.64 Aligned_cols=127 Identities=31% Similarity=0.484 Sum_probs=111.7
Q ss_pred CCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHH-HhhhhccCCCCCCCC
Q 025613 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDL-LALDSISGSGRADNS 157 (250)
Q Consensus 79 ~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL-~~~~~~~~~~~~~~~ 157 (250)
.+...+++++|++ ++.++.+++++.++ ++.|.+++++++||+|++|+++|+|+.+|+ .+++...
T Consensus 4 ~l~~~~v~~im~~--~~~~v~~~~~~~~a-----~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~-------- 68 (138)
T 2p9m_A 4 TLKNIKVKDVMTK--NVITAKRHEGVVEA-----FEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDK-------- 68 (138)
T ss_dssp -CTTCBGGGTSBC--SCCCEETTSBHHHH-----HHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTTC--------
T ss_pred ccccCCHHHhhcC--CceEECCCCcHHHH-----HHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhhc--------
Confidence 4556799999988 89999999999999 999999999999999988999999999999 7653210
Q ss_pred CCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcC-----CCEEEEEcCCCcEEEEEehH
Q 025613 158 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETK-----YRRLPVVDADGKLVGIITRG 232 (250)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~-----~~~lpVVd~~g~~vGiIt~~ 232 (250)
.....++.++|.++++++++++++.++++.|.+.+ .+.+||+|++|+++|+||..
T Consensus 69 --------------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~ 128 (138)
T 2p9m_A 69 --------------------YTLETTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDG 128 (138)
T ss_dssp --------------------CCSSCBHHHHSCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHH
T ss_pred --------------------ccCCcCHHHHhCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHH
Confidence 12356899999999999999999999999999999 99999999889999999999
Q ss_pred HHHHHHHh
Q 025613 233 NVVRAALQ 240 (250)
Q Consensus 233 Dil~~l~~ 240 (250)
|+++++.+
T Consensus 129 dll~~~~~ 136 (138)
T 2p9m_A 129 DIIRTISK 136 (138)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998765
No 24
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=99.84 E-value=2.4e-20 Score=154.47 Aligned_cols=124 Identities=21% Similarity=0.300 Sum_probs=112.6
Q ss_pred CCceeccccccCCceeEeCCCCchhcccchhHHHHHHHc---CCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCC
Q 025613 81 GVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEK---RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 157 (250)
Q Consensus 81 ~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~---~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~ 157 (250)
...+++++|++ +++++++++|+.++ ++.|.+. ++..+||+|++|+++|+|+.+||+..
T Consensus 52 ~~~~v~~iM~~--~~~~v~~~~tv~ea-----l~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~------------ 112 (205)
T 3kxr_A 52 SENEIGRYTDH--QMLVLSDKATVAQA-----QRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKH------------ 112 (205)
T ss_dssp CTTCGGGGCBC--CCCEEETTCBHHHH-----HHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTS------------
T ss_pred CcchHHhhccC--ceEEECCCCcHHHH-----HHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhC------------
Confidence 45589999999 89999999999999 9999987 78899999999999999999999852
Q ss_pred CCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613 158 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237 (250)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~ 237 (250)
....++.++|+++++++++++++.+|++.|.+++++.+||||++|+++|+||..||++.
T Consensus 113 ---------------------~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~ 171 (205)
T 3kxr_A 113 ---------------------EPHEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATAL 171 (205)
T ss_dssp ---------------------CTTSBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHH
T ss_pred ---------------------CCcchHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHH
Confidence 23578999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhh
Q 025613 238 ALQIKHA 244 (250)
Q Consensus 238 l~~~~~~ 244 (250)
+.+...+
T Consensus 172 i~~e~~e 178 (205)
T 3kxr_A 172 VREHYEA 178 (205)
T ss_dssp HHHHHC-
T ss_pred HHHHHHH
Confidence 9876543
No 25
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=99.84 E-value=1.7e-20 Score=144.13 Aligned_cols=123 Identities=27% Similarity=0.457 Sum_probs=108.5
Q ss_pred eeccccc---cCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCC
Q 025613 84 TVGDFMT---TKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP 160 (250)
Q Consensus 84 ~v~~~m~---~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~ 160 (250)
+++++|+ + +++++++++++.++ ++.|.+++++++||+| +|+++|+|+.+||++.....+.
T Consensus 7 ~v~~im~~~~~--~~~~v~~~~~~~~a-----~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~--------- 69 (135)
T 2rc3_A 7 TVKHLLQEKGH--TVVAIGPDDSVFNA-----MQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDK--------- 69 (135)
T ss_dssp BHHHHHHHHCC--CCCEECTTSBHHHH-----HHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSS---------
T ss_pred eHHHHHhcCCC--CcEEECCCCcHHHH-----HHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHHHHHcCC---------
Confidence 8999998 6 89999999999999 9999999999999999 8999999999999863221110
Q ss_pred CcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 161 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
.....++.++|.++++++++++++.+|++.|.+++.+++||+| +|+++|+||+.||++++.+
T Consensus 70 -----------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~~ 131 (135)
T 2rc3_A 70 -----------------PVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAIS 131 (135)
T ss_dssp -----------------CGGGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred -----------------CcccCCHHHhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHHh
Confidence 1235789999999999999999999999999999999999999 7999999999999998876
Q ss_pred h
Q 025613 241 I 241 (250)
Q Consensus 241 ~ 241 (250)
.
T Consensus 132 ~ 132 (135)
T 2rc3_A 132 Q 132 (135)
T ss_dssp -
T ss_pred c
Confidence 4
No 26
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=99.84 E-value=1.2e-20 Score=142.76 Aligned_cols=122 Identities=21% Similarity=0.347 Sum_probs=107.7
Q ss_pred ceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCc
Q 025613 83 YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 162 (250)
Q Consensus 83 ~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~ 162 (250)
++++++|++ +++++++++++.++ ++.|.+++++.+||+| +|+++|+|+.+|++++.....
T Consensus 1 m~v~~~m~~--~~~~v~~~~~~~~a-----~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~~~------------ 60 (125)
T 1pbj_A 1 MRVEDVMVT--DVDTIDITASLEDV-----LRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGD------------ 60 (125)
T ss_dssp -CHHHHCBC--SCCEEETTCBHHHH-----HHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTC------------
T ss_pred CCHHHhcCC--CceEECCCCcHHHH-----HHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhcCC------------
Confidence 368899998 89999999999999 9999999999999999 899999999999987532110
Q ss_pred ccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 163 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
.....++.++|.++++++++++++.++++.|.+.+.+.+||+|+ |+++|+||+.|+++++.+
T Consensus 61 ---------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~~ 122 (125)
T 1pbj_A 61 ---------------DLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAKMA 122 (125)
T ss_dssp ---------------CTTTSBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC-
T ss_pred ---------------cccccCHHHHcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence 12357899999999999999999999999999999999999997 999999999999998754
No 27
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=99.84 E-value=5.4e-21 Score=151.15 Aligned_cols=121 Identities=21% Similarity=0.355 Sum_probs=107.6
Q ss_pred CCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCCCC
Q 025613 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNS 157 (250)
Q Consensus 79 ~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~~~ 157 (250)
.+...+++++|+++.+++++++++++.++ ++.|.+++++++||+|++ |+++|+|+.+||+++..
T Consensus 34 ~l~~~~v~diM~~~~~~~~v~~~~~i~~a-----~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~---------- 98 (156)
T 3oi8_A 34 DFSDLEVRDAMITRSRMNVLKENDSIERI-----TAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMF---------- 98 (156)
T ss_dssp HHTTCBGGGTCEEGGGCCCEETTCCHHHH-----HHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSS----------
T ss_pred ccCCCCHhheeeeHHHeEEECCCCCHHHH-----HHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHH----------
Confidence 34567999999976578999999999999 999999999999999987 49999999999997532
Q ss_pred CCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHH
Q 025613 158 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 235 (250)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil 235 (250)
.....++.++|.+ ++++++++++.+|++.|.+++.+.+||+|++|+++|+||++||+
T Consensus 99 --------------------~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil 155 (156)
T 3oi8_A 99 --------------------NPEQFHLKSILRP-AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII 155 (156)
T ss_dssp --------------------CGGGCCHHHHCBC-CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred --------------------cCCcccHHHHcCC-CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence 0135679999976 88999999999999999999999999999899999999999986
No 28
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=99.84 E-value=7.2e-21 Score=149.88 Aligned_cols=135 Identities=24% Similarity=0.330 Sum_probs=113.2
Q ss_pred CceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCC
Q 025613 82 VYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 161 (250)
Q Consensus 82 ~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~ 161 (250)
..+++++|++..+++++++++++.++ ++.|.+++++++||+|++|+++|+||..||++++.....
T Consensus 14 ~~~v~dim~p~~~~~~v~~~~~l~~a-----~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~~---------- 78 (156)
T 3ctu_A 14 LGQEETFLTPAKNLAVLIDTHNADHA-----TLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDL---------- 78 (156)
T ss_dssp HTTGGGGEEEGGGCCCEETTSBHHHH-----HHHHTTCSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTC----------
T ss_pred HHHHHHHcCcccCceEECCCCCHHHH-----HHHHHHCCCceEeEECCCCEEEEEEcHHHHHHHHHhccc----------
Confidence 34789999965589999999999999 999999999999999989999999999999976432110
Q ss_pred cccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhh
Q 025613 162 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 241 (250)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~ 241 (250)
........++.++|.++++++++++++.+|++.|.+++ ++||+|++|+++|+||+.||++++.+.
T Consensus 79 -------------~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~--~lpVvd~~g~~~Giit~~dil~~l~~~ 143 (156)
T 3ctu_A 79 -------------SQEIMADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAVNAL 143 (156)
T ss_dssp -------------CHHHHTTSBGGGGCBCSCCCBCSSCCHHHHHHHTTTSS--EEEEECTTSBEEEEEETTHHHHHHHHH
T ss_pred -------------cccccccCcHHHhccCCceeeCCCCcHHHHHHHHHHcC--eEEEEcCCCeEEEEEEHHHHHHHHHHH
Confidence 00012367899999999999999999999999998886 699999889999999999999999888
Q ss_pred hhhhh
Q 025613 242 KHATE 246 (250)
Q Consensus 242 ~~~~~ 246 (250)
.++..
T Consensus 144 ~~~~~ 148 (156)
T 3ctu_A 144 LHDFS 148 (156)
T ss_dssp SCC--
T ss_pred HHhhc
Confidence 76643
No 29
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=99.83 E-value=4e-20 Score=145.47 Aligned_cols=137 Identities=23% Similarity=0.308 Sum_probs=113.9
Q ss_pred CCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCC
Q 025613 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM 158 (250)
Q Consensus 79 ~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~ 158 (250)
.+..++++++|.+..+++++.+++++.++ ++.|.+++++++||+|++|+++|+|+..||++++.....
T Consensus 7 ~l~~~~v~~im~~~~~~~~v~~~~~~~~a-----~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~------- 74 (157)
T 2emq_A 7 EFMQMTVKPFLIPADKVAHVQPGNYLDHA-----LLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLER------- 74 (157)
T ss_dssp ---CCBSTTTCEEGGGSCCBCTTSBHHHH-----HHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCSSS-------
T ss_pred hHhhCcHHhhccCCccceEECCCCcHHHH-----HHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhcccc-------
Confidence 45667999999854468899999999999 999999999999999988999999999999976432100
Q ss_pred CCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613 159 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 238 (250)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l 238 (250)
|.. ......++.++|.++++++++++++.+|++.|.++++ +||+|++|+++|+||+.||++++
T Consensus 75 -------~~~--------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~ 137 (157)
T 2emq_A 75 -------IEF--------ERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQL 137 (157)
T ss_dssp -------BCG--------GGGGTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHH
T ss_pred -------cch--------HHhcCCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHH
Confidence 000 0123578999999999999999999999999999987 99999889999999999999998
Q ss_pred Hhhhhh
Q 025613 239 LQIKHA 244 (250)
Q Consensus 239 ~~~~~~ 244 (250)
......
T Consensus 138 ~~~~~~ 143 (157)
T 2emq_A 138 NKQLHR 143 (157)
T ss_dssp HHTTCC
T ss_pred HHHhhc
Confidence 876554
No 30
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=99.83 E-value=1.5e-20 Score=148.68 Aligned_cols=139 Identities=18% Similarity=0.242 Sum_probs=114.4
Q ss_pred CCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCC
Q 025613 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM 158 (250)
Q Consensus 79 ~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~ 158 (250)
.+..++++++|+++.+++++.+++++.++ ++.|.++++..+||+|++|+++|+|+..||+++....+.
T Consensus 10 ~l~~~~v~~im~~~~~~~~v~~~~~l~~a-----~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~------- 77 (159)
T 1yav_A 10 QLLEATVGQFMIEADKVAHVQVGNNLEHA-----LLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLER------- 77 (159)
T ss_dssp -CTTCBHHHHSEEGGGSCCEETTCBHHHH-----HHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSS-------
T ss_pred HHhHhhHHHHhCCccceEEECCCCcHHHH-----HHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhhcc-------
Confidence 45567999999865568999999999999 999999999999999988999999999999976432110
Q ss_pred CCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613 159 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 238 (250)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l 238 (250)
+. .......++.++|.++++++.+++++.+|++.|.+.++ +||+|++|+++|+||+.||++++
T Consensus 78 -------~~--------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~ 140 (159)
T 1yav_A 78 -------IE--------FEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKEL 140 (159)
T ss_dssp -------BC--------GGGTTTSBHHHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHH
T ss_pred -------cc--------hhhhccCCHHHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHH
Confidence 00 00134678999999999999999999999999998876 99999889999999999999998
Q ss_pred Hhhhhhhh
Q 025613 239 LQIKHATE 246 (250)
Q Consensus 239 ~~~~~~~~ 246 (250)
.+...+..
T Consensus 141 ~~~~~~~~ 148 (159)
T 1yav_A 141 NKHIRSLN 148 (159)
T ss_dssp HHHC----
T ss_pred HHHHHhhc
Confidence 88765543
No 31
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.83 E-value=3e-20 Score=146.73 Aligned_cols=145 Identities=24% Similarity=0.387 Sum_probs=115.5
Q ss_pred CCCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCe-eEEEeCCCcEEEEEehHHHHhhhhccCCCCCC
Q 025613 77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITG-FPVIDDDWKLVGLVSDYDLLALDSISGSGRAD 155 (250)
Q Consensus 77 ~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~-~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~ 155 (250)
.......+++++|++ +++++++++++.+| ++.|.+++++. +||+|++ +++|+|+..||++++....
T Consensus 10 ~~~~~~~~v~~im~~--~~~~v~~~~tl~ea-----~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~~~~~----- 76 (157)
T 1o50_A 10 HHHMKVKDVCKLISL--KPTVVEEDTPIEEI-----VDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSGFHF----- 76 (157)
T ss_dssp CTTCBHHHHTTSSCC--CCEEECTTCBHHHH-----HHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHHHHH-----
T ss_pred hhhhccccHhhcccC--CCceECCCCCHHHH-----HHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHHhhhH-----
Confidence 455677899999998 89999999999999 99999999999 9999987 9999999999997642100
Q ss_pred CCCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHH
Q 025613 156 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 235 (250)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil 235 (250)
..... .+. .+..........++.++|.+ ++++++++++.+|++.|.+.+++.+||+|++|+++|+||+.||+
T Consensus 77 ~~~~~----~~~---~~~~~~~~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll 148 (157)
T 1o50_A 77 FGFIP----KEE---LIRSSMKRLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEIL 148 (157)
T ss_dssp HCCCC--------------CCCCCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHH
T ss_pred Hhhhc----cHH---HHHHHHHHHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHH
Confidence 00000 000 00000012346789999999 99999999999999999999999999999889999999999999
Q ss_pred HHHHhhh
Q 025613 236 RAALQIK 242 (250)
Q Consensus 236 ~~l~~~~ 242 (250)
+++.+..
T Consensus 149 ~~l~~~~ 155 (157)
T 1o50_A 149 LALWKGR 155 (157)
T ss_dssp HHHHHSC
T ss_pred HHHHHhh
Confidence 9987643
No 32
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=99.83 E-value=8.2e-21 Score=145.40 Aligned_cols=126 Identities=24% Similarity=0.381 Sum_probs=108.1
Q ss_pred CCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh-hhhccCCCCCCCCC
Q 025613 80 SGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA-LDSISGSGRADNSM 158 (250)
Q Consensus 80 ~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~-~~~~~~~~~~~~~~ 158 (250)
+...+++++|.+ +++++++++++.++ ++.|.+++++++||+|++|+++|+|+..||++ ++....
T Consensus 5 ~~~~~v~~im~~--~~~~v~~~~~~~~a-----~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-------- 69 (133)
T 1y5h_A 5 FTMTTARDIMNA--GVTCVGEHETLTAA-----AQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGL-------- 69 (133)
T ss_dssp ---CCHHHHSEE--TCCCEETTSBHHHH-----HHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTC--------
T ss_pred hhhcCHHHHhcC--CceEeCCCCCHHHH-----HHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCC--------
Confidence 345689999998 89999999999999 99999999999999988899999999999983 422110
Q ss_pred CCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613 159 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 238 (250)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l 238 (250)
.....++.++|.++++++++++++.+|++.|.+.+.+++||+|+ |+++|+||++||++++
T Consensus 70 -------------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l 129 (133)
T 1y5h_A 70 -------------------DPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHL 129 (133)
T ss_dssp -------------------CTTTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTC
T ss_pred -------------------CccccCHHHHhcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHH
Confidence 11357899999999999999999999999999999999999996 9999999999999876
Q ss_pred Hh
Q 025613 239 LQ 240 (250)
Q Consensus 239 ~~ 240 (250)
.+
T Consensus 130 ~~ 131 (133)
T 1y5h_A 130 PE 131 (133)
T ss_dssp C-
T ss_pred Hh
Confidence 43
No 33
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=99.83 E-value=2.3e-20 Score=146.10 Aligned_cols=121 Identities=26% Similarity=0.362 Sum_probs=107.7
Q ss_pred ceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCc
Q 025613 83 YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 162 (250)
Q Consensus 83 ~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~ 162 (250)
++++++|++..+++++.+++++.++ ++.|.++++..+||+|++|+++|+|+..||.+++....
T Consensus 28 ~~v~dim~~~~~~~~v~~~~~~~~a-----~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~------------ 90 (149)
T 3k2v_A 28 LRVNDIMHTGDEIPHVGLQATLRDA-----LLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTGV------------ 90 (149)
T ss_dssp SBGGGTSBCGGGSCEECTTCBHHHH-----HHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSSS------------
T ss_pred cCHHHHhcCCCCCeEECCCCcHHHH-----HHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcCC------------
Confidence 5899999875568999999999999 99999999999999998999999999999997643211
Q ss_pred ccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613 163 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236 (250)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~ 236 (250)
.....++.++|.++++++++++++.+|++.|.+++++.+||+|++ +++|+||+.||++
T Consensus 91 ---------------~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~ 148 (149)
T 3k2v_A 91 ---------------DMRDASIADVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLR 148 (149)
T ss_dssp ---------------CCTTCBHHHHSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTC
T ss_pred ---------------CcccCcHHHHcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhc
Confidence 124578999999999999999999999999999999999999954 9999999999975
No 34
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=99.82 E-value=1.1e-19 Score=154.90 Aligned_cols=156 Identities=22% Similarity=0.280 Sum_probs=112.3
Q ss_pred CCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC--CcEEEEEehHHHHhhhhccC--CCCC
Q 025613 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLALDSISG--SGRA 154 (250)
Q Consensus 79 ~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~--g~~~GiVt~~dL~~~~~~~~--~~~~ 154 (250)
....++|+|+|++ +++++.+++++.++ .++|.++++++|||||++ |+++|+|++.||++++...- ....
T Consensus 9 ~~~~~~v~diMt~--~vvtv~~~~tv~~~-----~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~ 81 (250)
T 2d4z_A 9 NKYNIQVGDIMVR--DVTSIASTSTYGDL-----LHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQ 81 (250)
T ss_dssp CCSSCBTTSSSBS--SCCCEETTCBHHHH-----HHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSS
T ss_pred ccCCCChHHhcCC--CCeEECCCCCHHHH-----HHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhh
Confidence 4566799999999 89999999999999 999999999999999974 68999999999997643210 0000
Q ss_pred --C---------------------CCCCCCccc------------------chh--------------------------
Q 025613 155 --D---------------------NSMFPEVDS------------------TWK-------------------------- 167 (250)
Q Consensus 155 --~---------------------~~~~~~~~~------------------~~~-------------------------- 167 (250)
. ...+..+.. .+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (250)
T 2d4z_A 82 PAAAAEADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTG 161 (250)
T ss_dssp CCCCCCBCCC----------------------------------------------------------------------
T ss_pred hhhhhcccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCcccccccccccccccccccccccccc
Confidence 0 000000000 000
Q ss_pred ----------chHHHHHHHhccCCCcc--c-ccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHH
Q 025613 168 ----------TFNEVQKLLSKTNGKMV--G-DLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNV 234 (250)
Q Consensus 168 ----------~~~~~~~~~~~~~~~~v--~-~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Di 234 (250)
..++...........++ . .+|++.|++|.+++++.+++.+|...|++++||++ +|+++||||++||
T Consensus 162 ~~~~~~~~~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl 240 (250)
T 2d4z_A 162 QVASRFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEI 240 (250)
T ss_dssp -----CCSCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHH
T ss_pred ccCcccccccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHH
Confidence 00000111111233444 4 47999999999999999999999999999999998 7999999999999
Q ss_pred HHHHHhhh
Q 025613 235 VRAALQIK 242 (250)
Q Consensus 235 l~~l~~~~ 242 (250)
++++....
T Consensus 241 ~kai~~~~ 248 (250)
T 2d4z_A 241 QAAIEGSY 248 (250)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHh
Confidence 99987643
No 35
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=99.82 E-value=7e-20 Score=148.46 Aligned_cols=125 Identities=27% Similarity=0.340 Sum_probs=111.1
Q ss_pred ceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCc
Q 025613 83 YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 162 (250)
Q Consensus 83 ~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~ 162 (250)
++++++|++ +++++.+++++.+| ++.|.+++++.+||+|++|+++|+|+.+||++.+...+
T Consensus 9 ~~v~~im~~--~~~~v~~~~~l~ea-----~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~------------ 69 (184)
T 1pvm_A 9 MRVEKIMNS--NFKTVNWNTTVFDA-----VKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRN------------ 69 (184)
T ss_dssp CBGGGTSBT--TCCEEETTCBHHHH-----HHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGC------------
T ss_pred cCHHHhcCC--CCeEECCCCcHHHH-----HHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcc------------
Confidence 689999998 89999999999999 99999999999999998899999999999997533111
Q ss_pred ccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 163 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
......++.++|.++++++.+++++.+|++.|.+++.+.+||+|++|+++|+||+.||++++.+
T Consensus 70 --------------~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~ 133 (184)
T 1pvm_A 70 --------------KKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR 133 (184)
T ss_dssp --------------CCGGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred --------------cCcccCCHHHHhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence 0123568999999999999999999999999999999999999988999999999999987655
No 36
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=99.82 E-value=1.1e-19 Score=140.40 Aligned_cols=125 Identities=22% Similarity=0.380 Sum_probs=106.2
Q ss_pred ceecc---ccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCC
Q 025613 83 YTVGD---FMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF 159 (250)
Q Consensus 83 ~~v~~---~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~ 159 (250)
.++++ +|.. +++++.+++++.++ ++.|.+++++.+||+|++|+++|+|+..||.+++....
T Consensus 8 ~~v~~~~~~~~~--~~~~v~~~~~~~~a-----~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~--------- 71 (144)
T 2nyc_A 8 IPIGDLNIITQD--NMKSCQMTTPVIDV-----IQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGI--------- 71 (144)
T ss_dssp SBGGGSSCCBCS--SCCCBCTTSBHHHH-----HHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----------
T ss_pred cchhhcCCCCCC--CceEECCCCcHHHH-----HHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcccc---------
Confidence 35666 7877 89999999999999 99999999999999998899999999999997632110
Q ss_pred CCcccchhchHHHHHHHhccCCCcccccccC------CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHH
Q 025613 160 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTP------APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGN 233 (250)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~D 233 (250)
......++.++|.+ +++++++++++.+|++.|.+.+.+.+||+|++|+++|+||+.|
T Consensus 72 -----------------~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~d 134 (144)
T 2nyc_A 72 -----------------YNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSD 134 (144)
T ss_dssp --------------------CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHH
T ss_pred -----------------cccCCccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHH
Confidence 01235678999875 6889999999999999999999999999998899999999999
Q ss_pred HHHHHHh
Q 025613 234 VVRAALQ 240 (250)
Q Consensus 234 il~~l~~ 240 (250)
|++++.+
T Consensus 135 il~~l~~ 141 (144)
T 2nyc_A 135 ILKYILL 141 (144)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999865
No 37
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=99.81 E-value=9.8e-20 Score=146.89 Aligned_cols=156 Identities=22% Similarity=0.327 Sum_probs=115.2
Q ss_pred CCCCceeccccccCCc--eeEe--CCCCchhcccchhHHHHHHHcCCCeeEEE--eCCCcEEEEEehHHHHhhhhccCCC
Q 025613 79 SSGVYTVGDFMTTKEE--LHVV--KPTTTVDEAFVPTALEILVEKRITGFPVI--DDDWKLVGLVSDYDLLALDSISGSG 152 (250)
Q Consensus 79 ~~~~~~v~~~m~~~~~--~~~v--~~~~~v~~a~~~~~~~~~~~~~~~~~~Vv--d~~g~~~GiVt~~dL~~~~~~~~~~ 152 (250)
.+...+++++|++..+ ++++ .+++++.+| ++.|.+++++++||+ |++|+++|+|+..||++++......
T Consensus 7 ~~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a-----~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~ 81 (185)
T 2j9l_A 7 FAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDV-----ETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKK 81 (185)
T ss_dssp --CCCBHHHHSBSCTTSCCCCCEESSCEEHHHH-----HHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTS
T ss_pred hhccCcHHHHhcccccCceEEEecCCCccHHHH-----HHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhccc
Confidence 4567799999998321 7788 999999999 999999999999999 7789999999999999864321100
Q ss_pred CCCCCCCCCcccchhchHHHH--HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEe
Q 025613 153 RADNSMFPEVDSTWKTFNEVQ--KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIIT 230 (250)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt 230 (250)
.. .. +...+..+.... .........++.++|.++++++.+++++.+|++.|.+++.+++||+| +|+++|+||
T Consensus 82 ~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit 155 (185)
T 2j9l_A 82 QD-GV----VSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIIT 155 (185)
T ss_dssp CS-CC----CTTCEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEE
T ss_pred CC-Cc----cccceeecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEE
Confidence 00 00 000000000000 00001245689999999999999999999999999999999999999 899999999
Q ss_pred hHHHHHHHHhhhhhh
Q 025613 231 RGNVVRAALQIKHAT 245 (250)
Q Consensus 231 ~~Dil~~l~~~~~~~ 245 (250)
+.||++++.+.....
T Consensus 156 ~~dll~~l~~~~~~~ 170 (185)
T 2j9l_A 156 KKDVLKHIAQMANQD 170 (185)
T ss_dssp HHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhhccc
Confidence 999999998776543
No 38
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=99.81 E-value=9.6e-20 Score=143.55 Aligned_cols=129 Identities=25% Similarity=0.435 Sum_probs=112.2
Q ss_pred ceeccccccC----CceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCC
Q 025613 83 YTVGDFMTTK----EELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM 158 (250)
Q Consensus 83 ~~v~~~m~~~----~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~ 158 (250)
.+++++|++. .+++++.+++++.+| ++.|.+++++.+||++ +|+++|+|+.+||++++...+.
T Consensus 7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a-----~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~------- 73 (157)
T 4fry_A 7 TTVAQILKAKPDSGRTIYTVTKNDFVYDA-----IKLMAEKGIGALLVVD-GDDIAGIVTERDYARKVVLQER------- 73 (157)
T ss_dssp CBHHHHHHHSTTTTCCCCEEETTSBHHHH-----HHHHHHHTCSEEEEES-SSSEEEEEEHHHHHHHSGGGTC-------
T ss_pred HHHHHHHhcccccCCCCeEECCCCcHHHH-----HHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHHhccC-------
Confidence 4799999863 367999999999999 9999999999999965 8899999999999976432220
Q ss_pred CCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613 159 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 238 (250)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l 238 (250)
.....++.++|.++++++.+++++.+|+++|.+++++++||+| +|+++|+||+.||++++
T Consensus 74 -------------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l 133 (157)
T 4fry_A 74 -------------------SSKATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSV 133 (157)
T ss_dssp -------------------CSSSCBHHHHSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred -------------------CccccCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHH
Confidence 1246789999999999999999999999999999999999999 79999999999999999
Q ss_pred Hhhhhh
Q 025613 239 LQIKHA 244 (250)
Q Consensus 239 ~~~~~~ 244 (250)
.+....
T Consensus 134 ~~~~~~ 139 (157)
T 4fry_A 134 IADQQF 139 (157)
T ss_dssp HTTCCC
T ss_pred HHHHHh
Confidence 876544
No 39
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=99.81 E-value=1.2e-19 Score=142.44 Aligned_cols=128 Identities=24% Similarity=0.393 Sum_probs=109.0
Q ss_pred CCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCC
Q 025613 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 157 (250)
Q Consensus 78 ~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~ 157 (250)
..+..++++++ + +++++.+++++.+| ++.|.+++++.+||+|++|+++|+|+..||+++......
T Consensus 18 ~~l~~~~v~~~--~--~~~~v~~~~~~~~a-----~~~m~~~~~~~~pVvd~~~~~vGivt~~dl~~~~~~~~~------ 82 (152)
T 2uv4_A 18 KSLEELQIGTY--A--NIAMVRTTTPVYVA-----LGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTY------ 82 (152)
T ss_dssp SBHHHHTCSBC--S--SCCCEETTCBHHHH-----HHHHHHHCCSEEEEECTTSBEEEEEEHHHHHHHHHCSSC------
T ss_pred hhHHHccCCcc--C--CceEeCCCCcHHHH-----HHHHHHcCCceEeEECCCCcEEEEEeHHHHHHHhcchhh------
Confidence 44566678887 4 68999999999999 999999999999999988999999999999976432110
Q ss_pred CCCCcccchhchHHHHHHHhccCCCccccccc------CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeh
Q 025613 158 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMT------PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITR 231 (250)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~ 231 (250)
.....++.++|. ++++++.+++++.+|++.|.+.+.+.+||+|++|+++|+||+
T Consensus 83 --------------------~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~ 142 (152)
T 2uv4_A 83 --------------------NNLDVSVTKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDENDVVKGIVSL 142 (152)
T ss_dssp --------------------CCTTSBGGGGGGTCCHHHHTCSEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEH
T ss_pred --------------------hhhcchHHHHHhhhhcccCCCeEECCCCcHHHHHHHHHHcCCeEEEEECCCCeEEEEEEH
Confidence 012467888986 778999999999999999999999999999988999999999
Q ss_pred HHHHHHHHh
Q 025613 232 GNVVRAALQ 240 (250)
Q Consensus 232 ~Dil~~l~~ 240 (250)
.||++++.+
T Consensus 143 ~dil~~l~~ 151 (152)
T 2uv4_A 143 SDILQALVL 151 (152)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHh
Confidence 999998743
No 40
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=99.81 E-value=1.9e-19 Score=142.30 Aligned_cols=134 Identities=19% Similarity=0.329 Sum_probs=112.4
Q ss_pred CCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeC--CCcEEEEEehHHHHhhhhccCCCCCCCC
Q 025613 80 SGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSISGSGRADNS 157 (250)
Q Consensus 80 ~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~--~g~~~GiVt~~dL~~~~~~~~~~~~~~~ 157 (250)
...++++++|++ +++++.+++++.+| ++.|.+++++++||+|+ +|+++|+|+..||.+++.......
T Consensus 10 ~~~~~v~dim~~--~~~~v~~~~~~~~a-----~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~---- 78 (164)
T 2pfi_A 10 SHHVRVEHFMNH--SITTLAKDTPLEEV-----VKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSR---- 78 (164)
T ss_dssp CCSCBHHHHCBC--CCCCEETTCBHHHH-----HHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC---------
T ss_pred ccCCCHHHHcCC--CCeEECCCCcHHHH-----HHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhcccc----
Confidence 456789999998 89999999999999 99999999999999996 799999999999997643211000
Q ss_pred CCCCcccchhchHHHHHHHhccCCCcccccccCC------CeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeh
Q 025613 158 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPA------PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITR 231 (250)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~------~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~ 231 (250)
......++.++|.++ ++++.+++++.+|++.|.+.+.+.+||+| +|+++|+||+
T Consensus 79 -------------------~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~ 138 (164)
T 2pfi_A 79 -------------------APGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSW 138 (164)
T ss_dssp ---------------------CCCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEH
T ss_pred -------------------CCcccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEH
Confidence 011245678888776 78999999999999999999999999999 7999999999
Q ss_pred HHHHHHHHhhhhh
Q 025613 232 GNVVRAALQIKHA 244 (250)
Q Consensus 232 ~Dil~~l~~~~~~ 244 (250)
.||++++.+....
T Consensus 139 ~dil~~~~~~~~~ 151 (164)
T 2pfi_A 139 VEMKKAISNLTNP 151 (164)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHhhhCC
Confidence 9999999886644
No 41
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=99.80 E-value=3.2e-19 Score=154.40 Aligned_cols=183 Identities=19% Similarity=0.283 Sum_probs=140.2
Q ss_pred ccceecCCCChhHHHHHhhhcCC-eeeeeCCCc-----ccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchh
Q 025613 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS-----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD 105 (250)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~ 105 (250)
.+.++..+.++.++...|.+... .++...+.. +...+. ... ........+++++|.+ +++++.+++++.
T Consensus 102 ~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~dl-~~~--~~~~~~~~~v~~~m~~--~~~~v~~~~~l~ 176 (296)
T 3ddj_A 102 NPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREF-LLL--YKDLDEIFPVKVFMST--KVQTIYKEVRLD 176 (296)
T ss_dssp SCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHH-GGG--GGGSCCCCBHHHHSBC--SCCCEETTSBHH
T ss_pred CCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHH-HHh--hhcccccccHHHhhcC--CCeEECCCCCHH
Confidence 45677888999999998877664 455443211 111111 000 0112344589999988 899999999999
Q ss_pred cccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHHHHhccCCCccc
Q 025613 106 EAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVG 185 (250)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 185 (250)
++ ++.|.+++++.+||+|++|+++|+||..|+++.+... |..+.. ......++.
T Consensus 177 ~~-----~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~----------------~~~~~~-----~~~~~~~v~ 230 (296)
T 3ddj_A 177 QA-----VKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKA----------------VDKLDP-----DYFYGKVVK 230 (296)
T ss_dssp HH-----HHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH----------------HHHTCT-----HHHHTCBHH
T ss_pred HH-----HHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHH----------------HhhcCh-----hhhcCcCHH
Confidence 99 9999999999999999999999999999999763200 000000 112357899
Q ss_pred ccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhhhhhh
Q 025613 186 DLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHAT 245 (250)
Q Consensus 186 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~~~~~ 245 (250)
++|.++++++.+++++.+|++.|.+.+++++||+|++|+++|+||+.||++++.+.....
T Consensus 231 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~Dil~~l~~~~~~~ 290 (296)
T 3ddj_A 231 DVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHILVME 290 (296)
T ss_dssp HHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHH
T ss_pred HHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEcHHHHHHHHHHHhcch
Confidence 999999999999999999999999999999999998999999999999999998876543
No 42
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.79 E-value=8.4e-19 Score=145.77 Aligned_cols=121 Identities=26% Similarity=0.345 Sum_probs=110.2
Q ss_pred CceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCC
Q 025613 82 VYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 161 (250)
Q Consensus 82 ~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~ 161 (250)
..+++++|.+ +++++.+++++.++ ++.|.++++.++||+|++|+++|+|+.+|+.+..
T Consensus 12 ~~~~~~~~~~--~~~~v~~~~tv~ea-----~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~--------------- 69 (213)
T 1vr9_A 12 HMKVKKWVTQ--DFPMVEESATVREC-----LHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLD--------------- 69 (213)
T ss_dssp -CBGGGGCBS--CSCEEETTCBHHHH-----HHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSC---------------
T ss_pred ccCHHHhhcC--CCeEECCCCcHHHH-----HHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhc---------------
Confidence 3478899998 89999999999999 9999999999999999889999999999998641
Q ss_pred cccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhh
Q 025613 162 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 241 (250)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~ 241 (250)
...++.++|.++++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+|+++.+...
T Consensus 70 ------------------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~ 131 (213)
T 1vr9_A 70 ------------------LDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEA 131 (213)
T ss_dssp ------------------TTSBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHS
T ss_pred ------------------CCCcHHHHccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHH
Confidence 24679999999999999999999999999999999999999889999999999999988764
Q ss_pred h
Q 025613 242 K 242 (250)
Q Consensus 242 ~ 242 (250)
.
T Consensus 132 ~ 132 (213)
T 1vr9_A 132 L 132 (213)
T ss_dssp C
T ss_pred h
Confidence 4
No 43
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=99.79 E-value=6e-19 Score=153.16 Aligned_cols=125 Identities=26% Similarity=0.372 Sum_probs=113.5
Q ss_pred CCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHc-----CCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCC
Q 025613 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGR 153 (250)
Q Consensus 79 ~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~-----~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~ 153 (250)
.....+++++|++ +++++++++++.++ ++.|.++ ++.++||+|++|+++|+|+.+|++..
T Consensus 133 ~~~~~~v~~iM~~--~~~~v~~~~tv~ea-----~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~-------- 197 (286)
T 2oux_A 133 HYEDETAGAIMTT--EFVSIVANQTVRSA-----MYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN-------- 197 (286)
T ss_dssp TSCTTBHHHHCBS--CCCEECSSSBHHHH-----HHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS--------
T ss_pred cCChHHHHHhCCC--CceEECCCCcHHHH-----HHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcC--------
Confidence 3456789999998 89999999999999 9999987 78889999988999999999999853
Q ss_pred CCCCCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHH
Q 025613 154 ADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGN 233 (250)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~D 233 (250)
....++.++|.+++++|++++++.+|++.|.+++.+.+||||++|+++|+||..|
T Consensus 198 -------------------------~~~~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~D 252 (286)
T 2oux_A 198 -------------------------DDDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDD 252 (286)
T ss_dssp -------------------------CTTSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHH
T ss_pred -------------------------CCCCcHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHH
Confidence 2357899999999999999999999999999999999999998999999999999
Q ss_pred HHHHHHhhhh
Q 025613 234 VVRAALQIKH 243 (250)
Q Consensus 234 il~~l~~~~~ 243 (250)
|++.+.+...
T Consensus 253 il~~i~~e~~ 262 (286)
T 2oux_A 253 IIDVIDDEAA 262 (286)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhH
Confidence 9999877553
No 44
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=99.78 E-value=1.5e-18 Score=149.92 Aligned_cols=122 Identities=34% Similarity=0.474 Sum_probs=108.9
Q ss_pred CCceeccccccCCceeEeCCCCchhcccchhHHHHHHHc-----CCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCC
Q 025613 81 GVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRAD 155 (250)
Q Consensus 81 ~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~-----~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~ 155 (250)
...+++++|++ +++++++++++.++ ++.|.++ ++..+||+|++|+++|+|+.+|++..
T Consensus 133 ~~~~v~~iM~~--~~~~v~~~~tv~ea-----~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~---------- 195 (278)
T 2yvy_A 133 EEDEAGGLMTP--EYVAVREGMTVEEV-----LRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA---------- 195 (278)
T ss_dssp CTTBGGGTCBS--CCCEECTTSBHHHH-----HHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHS----------
T ss_pred CcchHHhhcCC--CceEECCCCcHHHH-----HHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcC----------
Confidence 45589999998 89999999999999 9999987 68999999988999999999999853
Q ss_pred CCCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHH
Q 025613 156 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 235 (250)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil 235 (250)
....++.++|.+++++|++++++.+|++.|.+++.+.+||||++|+++|+||..||+
T Consensus 196 -----------------------~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil 252 (278)
T 2yvy_A 196 -----------------------DPRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVL 252 (278)
T ss_dssp -----------------------CTTCBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHH
T ss_pred -----------------------CCCCcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHH
Confidence 235789999999999999999999999999999999999999899999999999999
Q ss_pred HHHHhhh
Q 025613 236 RAALQIK 242 (250)
Q Consensus 236 ~~l~~~~ 242 (250)
+.+.+..
T Consensus 253 ~~i~~e~ 259 (278)
T 2yvy_A 253 DVLEAEA 259 (278)
T ss_dssp HHC----
T ss_pred HHHHHHh
Confidence 9877654
No 45
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.78 E-value=1.1e-18 Score=149.72 Aligned_cols=199 Identities=18% Similarity=0.236 Sum_probs=133.8
Q ss_pred cceecCCCChhHHHHHhhhcCC-eeeeeCCC----ccc-ccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhc
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVSALRRS----SAV-FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE 106 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~ 106 (250)
++.+..+.++.+++..|.+... .++...+. +.. ..+...............+++++|.+ +++++++++++.+
T Consensus 70 ~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~ 147 (282)
T 2yzq_A 70 VPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEKYKGVEIEPYYQR--YVSIVWEGTPLKA 147 (282)
T ss_dssp CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCSGGGGCBSTTTSBS--CCCCEETTSBHHH
T ss_pred CcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhccCCcccCcHHHHhCC--CCEEECCCCCHHH
Confidence 5677889999999999876654 44444322 111 11111101101112235688999987 8999999999999
Q ss_pred ccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCC-CCCCc----ccchhchHHHHHHHhccCC
Q 025613 107 AFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS-MFPEV----DSTWKTFNEVQKLLSKTNG 181 (250)
Q Consensus 107 a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~ 181 (250)
+ ++.|.+++++++||+|++|+++|+|+..|++........-..... ..+.. .+.+..+.. ........
T Consensus 148 ~-----~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 220 (282)
T 2yzq_A 148 A-----LKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFE--KFELQLPN 220 (282)
T ss_dssp H-----HHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC----------------------------------CC
T ss_pred H-----HHHHHHcCCcEEEEEcCCCeEEEEEEHHHHhhhhhhhhhhccchhhhhhhhhhhcccchHHHHh--Hhhhhhcc
Confidence 9 999999999999999988999999999999832110000000000 00000 000000000 00112346
Q ss_pred CcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 182 KMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 182 ~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
.++.++|+++++++++++++.+|+++|.+++++++||+|++|+++|+||+.||++++.+
T Consensus 221 ~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGiit~~Dil~~~~~ 279 (282)
T 2yzq_A 221 KPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLVK 279 (282)
T ss_dssp CBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGGCC
T ss_pred CCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEECCCCCEEEEEeHHHHHHHHHh
Confidence 78999999999999999999999999999999999999977899999999999987654
No 46
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=99.78 E-value=6.6e-19 Score=148.95 Aligned_cols=148 Identities=22% Similarity=0.320 Sum_probs=108.5
Q ss_pred CceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCC--------
Q 025613 82 VYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGR-------- 153 (250)
Q Consensus 82 ~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~-------- 153 (250)
..+++++|++ +++++.+++++.+| ++.|.+++++.+||+|++|+++|+||..|+++++.......
T Consensus 6 ~~~v~~im~~--~~~~v~~~~~~~~a-----~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~~~~~~~~~~~~~~ 78 (245)
T 3l2b_A 6 KLKVEDLEMD--KIAPLAPEVSLKMA-----WNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWDSNILAKSATS 78 (245)
T ss_dssp CCBGGGSCCB--CCCCBCTTCBHHHH-----HHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHCCCCTTHHHHTTCC
T ss_pred cCcHHHhcCC--CCcEECCCCcHHHH-----HHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHhhhhhhhhhccCC
Confidence 3589999998 89999999999999 99999999999999999899999999999998653211000
Q ss_pred -----------------CCCCC----------------------------------------------------------
Q 025613 154 -----------------ADNSM---------------------------------------------------------- 158 (250)
Q Consensus 154 -----------------~~~~~---------------------------------------------------------- 158 (250)
.....
T Consensus 79 ~~~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~~~~v~~ 158 (245)
T 3l2b_A 79 LDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIE 158 (245)
T ss_dssp HHHHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCCCHHHHH
T ss_pred HHHHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCCCHHHHH
Confidence 00000
Q ss_pred ------CCCcccchhchHHHHHHHhccCCCccccccc-CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeh
Q 025613 159 ------FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMT-PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITR 231 (250)
Q Consensus 159 ------~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~ 231 (250)
.+.+.+.++.|..... .....++.++|+ ++++++++++++.+|+++|.+++++.+||+|++|+++|+||+
T Consensus 159 ~a~~~~~~~i~t~~d~~~~~~~---~~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~ 235 (245)
T 3l2b_A 159 LAKKNNITVITTPHDSFTASRL---IVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIAR 235 (245)
T ss_dssp HHHHHTCEEEECSSCHHHHHHH---GGGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEC
T ss_pred HHHHcCCeEEEeCCChHHHHHH---HhcCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEH
Confidence 0000111111211111 123567999999 899999999999999999999999999999988999999999
Q ss_pred HHHHHHHH
Q 025613 232 GNVVRAAL 239 (250)
Q Consensus 232 ~Dil~~l~ 239 (250)
+|++++..
T Consensus 236 ~dll~~~~ 243 (245)
T 3l2b_A 236 FHLISTHK 243 (245)
T ss_dssp C-------
T ss_pred HHhhchhh
Confidence 99998754
No 47
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=99.77 E-value=3.5e-18 Score=147.86 Aligned_cols=174 Identities=24% Similarity=0.287 Sum_probs=137.7
Q ss_pred ccceecCCCChhHHHHHhhhcCC-eeeeeCCCc---ccccccccccCCCCC---------CCCCceeccccccCCceeEe
Q 025613 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS---AVFASGTLTANSAAP---------SSGVYTVGDFMTTKEELHVV 98 (250)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~---------~~~~~~v~~~m~~~~~~~~v 98 (250)
.++++..+.++.+++..|.+... .++...+.. +...+.......... .....+++++|++ +++++
T Consensus 29 ~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d~~l~GivT~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v 106 (296)
T 3ddj_A 29 NPPILSKEDRLGSAFKKINEGGIGRIIVANEKIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDYMTP--NPVTV 106 (296)
T ss_dssp SCCEECTTSBHHHHHHHTTGGGCCEEEEESSSEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTSBGGGTSEE--SCCCE
T ss_pred CCcEECCCccHHHHHHHHHHCCCceEEEECCeEEEEEeHHHHHHHhcccccccccchhhHHHhcccHHHhccC--CCEEE
Confidence 57789999999999999987765 444444221 111111110000000 0125689999998 89999
Q ss_pred CCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHHHHhc
Q 025613 99 KPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 178 (250)
Q Consensus 99 ~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (250)
.+++++.++ ++.|.+++++++||+|++|+++|+||.+|+++++.. .
T Consensus 107 ~~~~~~~~a-----~~~m~~~~~~~lpVvd~~~~lvGivt~~dl~~~~~~-----------------------------~ 152 (296)
T 3ddj_A 107 YNTSDEFTA-----INIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKD-----------------------------L 152 (296)
T ss_dssp ETTSCHHHH-----HHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGG-----------------------------S
T ss_pred cCCCCHHHH-----HHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHhhhc-----------------------------c
Confidence 999999999 999999999999999989999999999999975321 2
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhh
Q 025613 179 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 241 (250)
Q Consensus 179 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~ 241 (250)
....++.++|.++++++.+++++.+|++.|.+.+.+.+||+|++|+++|+||..|+++++.+.
T Consensus 153 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~ 215 (296)
T 3ddj_A 153 DEIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKA 215 (296)
T ss_dssp CCCCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred cccccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHH
Confidence 235689999999999999999999999999999999999999899999999999999998743
No 48
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=99.76 E-value=2.1e-18 Score=147.39 Aligned_cols=181 Identities=15% Similarity=0.249 Sum_probs=132.9
Q ss_pred ccceecCCCChhHHHHHhhhcCC-eeeeeCCCc-----ccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchh
Q 025613 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS-----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD 105 (250)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~ 105 (250)
.+.++..+.++.++...+.+... .++...+.. ....+...... .......+++++|++ ++.++++++++.
T Consensus 93 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~--~~~~~~~~v~~~m~~--~~~~v~~~~~l~ 168 (280)
T 3kh5_A 93 NVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALL--DKIDENEVIDDYITR--DVIVATPGERLK 168 (280)
T ss_dssp SCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHG--GGSCTTCBSGGGCBC--SCCCBCTTCBHH
T ss_pred CCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHh--hcCCCCCCHHHHhCC--CCeEECCCCcHH
Confidence 46678889999999999887665 444443221 11111100000 112234489999988 899999999999
Q ss_pred cccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHHHHhccCCCccc
Q 025613 106 EAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVG 185 (250)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 185 (250)
++ ++.|.+++++.+||+ ++|+++|+||..|+++.+.... .|+.+.. .........++.
T Consensus 169 ~~-----~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~~~~~~~--------------~~~~~~~--~~~~~~~~~~v~ 226 (280)
T 3kh5_A 169 DV-----ARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKLLGSDW--------------AFNHMQT--GNVREITNVRME 226 (280)
T ss_dssp HH-----HHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHHHHTSHH--------------HHHHHHS--CCTHHHHHCBHH
T ss_pred HH-----HHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHHHHhhhh--------------hhhhhcc--cchhhhhCCcHH
Confidence 99 999999999999999 5789999999999997642110 0000000 000011346899
Q ss_pred ccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613 186 DLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 238 (250)
Q Consensus 186 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l 238 (250)
++|.++++++++++++.+|++.|.+++++++||+|++|+++|+||++||++++
T Consensus 227 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Givt~~dil~~l 279 (280)
T 3kh5_A 227 EIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLKYF 279 (280)
T ss_dssp HHSBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHGGGG
T ss_pred HHhcCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCeEEEEEeHHHHHHhh
Confidence 99999999999999999999999999999999999888999999999999865
No 49
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=99.76 E-value=5.5e-18 Score=148.37 Aligned_cols=176 Identities=20% Similarity=0.272 Sum_probs=132.8
Q ss_pred cceecCCCChhHHHHHhhhcCC-eeeeeCCCcc-----cc-----ccccccc--CCCCCCCCCceeccc---cccCCcee
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVSALRRSSA-----VF-----ASGTLTA--NSAAPSSGVYTVGDF---MTTKEELH 96 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~-----~~-----~~~~~~~--~~~~~~~~~~~v~~~---m~~~~~~~ 96 (250)
+.++..+.++.+++..+.+... .++...+... .. .+..... ..........+++++ |.+ +++
T Consensus 124 ~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~v~~~~~~m~~--~~~ 201 (323)
T 3t4n_C 124 TASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQD--NMK 201 (323)
T ss_dssp CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGGGGGCCSBGGGTTCSBCT--TCC
T ss_pred ceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCchhhhhCcHHHcCCCCCC--CcE
Confidence 4466778889998888866554 3333322110 00 0000000 000022334578999 877 899
Q ss_pred EeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHHHH
Q 025613 97 VVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLL 176 (250)
Q Consensus 97 ~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (250)
++.+++++.++ ++.|.+++++.+||+|++|+++|+||..|+++++....
T Consensus 202 ~v~~~~~~~~~-----~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~-------------------------- 250 (323)
T 3t4n_C 202 SCQMTTPVIDV-----IQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGI-------------------------- 250 (323)
T ss_dssp CBCTTSBHHHH-----HHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHHTTH--------------------------
T ss_pred EECCCCcHHHH-----HHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHhhch--------------------------
Confidence 99999999999 99999999999999999999999999999997643110
Q ss_pred hccCCCcccccccC------CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhh
Q 025613 177 SKTNGKMVGDLMTP------APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 241 (250)
Q Consensus 177 ~~~~~~~v~~im~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~ 241 (250)
......++.++|.+ +++++++++++.+|++.|.+++++++||+|++|+++|+||..||++++...
T Consensus 251 ~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Dil~~l~~~ 321 (323)
T 3t4n_C 251 YNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILLG 321 (323)
T ss_dssp HHHTTSBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHHHHHHHHHC
T ss_pred hhhccCCHHHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHHHHHHHHhc
Confidence 01235689999987 789999999999999999999999999999889999999999999998753
No 50
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=99.74 E-value=1.7e-17 Score=141.71 Aligned_cols=173 Identities=20% Similarity=0.349 Sum_probs=135.0
Q ss_pred ccceecCCCChhHHHHHhhhcCC-eeeeeCC-Cc-----ccccccccccC----------CCCC---CCCCceecccccc
Q 025613 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRR-SS-----AVFASGTLTAN----------SAAP---SSGVYTVGDFMTT 91 (250)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~-~~-----~~~~~~~~~~~----------~~~~---~~~~~~v~~~m~~ 91 (250)
.+.++..+.++.+++..|.+... .++...+ .. +...+...... .... .....+++++|++
T Consensus 13 ~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 92 (280)
T 3kh5_A 13 KIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINEPVREIMEE 92 (280)
T ss_dssp CCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHHHTTSBGGGTSBC
T ss_pred CcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchhhhhhhccccchhHHhhhhHHHhcCC
Confidence 46678889999999999987765 5665553 11 11111100000 0000 0114589999998
Q ss_pred CCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHH
Q 025613 92 KEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNE 171 (250)
Q Consensus 92 ~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (250)
++.++++++++.++ ++.|.+++++++||+|++|+++|+|+..|+++.+...
T Consensus 93 --~~~~v~~~~~~~~a-----~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~---------------------- 143 (280)
T 3kh5_A 93 --NVITLKENADIDEA-----IETFLTKNVGGAPIVNDENQLISLITERDVIRALLDK---------------------- 143 (280)
T ss_dssp --SCCCEETTCBHHHH-----HHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGG----------------------
T ss_pred --CCEEECCCCCHHHH-----HHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhc----------------------
Confidence 89999999999999 9999999999999999999999999999999763211
Q ss_pred HHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 172 VQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 172 ~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
.....++.++|.++++++++++++.++++.|.+.+.+.+||+ ++|+++|+||.+|+++++.+
T Consensus 144 ------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~~~~~ 205 (280)
T 3kh5_A 144 ------IDENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKLLGS 205 (280)
T ss_dssp ------SCTTCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHHHHTS
T ss_pred ------CCCCCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHHHHhh
Confidence 122458999999999999999999999999999999999999 48999999999999998754
No 51
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=99.73 E-value=2.4e-17 Score=152.48 Aligned_cols=123 Identities=33% Similarity=0.465 Sum_probs=111.6
Q ss_pred CCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHc-----CCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCC
Q 025613 80 SGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRA 154 (250)
Q Consensus 80 ~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~-----~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~ 154 (250)
....+++++|++ +++++++++++.++ ++.|+++ ++..+||+|++|+++|+|+.+|++..
T Consensus 152 ~~~~~v~~iM~~--~~v~v~~~~tv~ea-----~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~--------- 215 (473)
T 2zy9_A 152 YEEDEAGGLMTP--EYVAVREGMTVEEV-----LRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA--------- 215 (473)
T ss_dssp SCTTBSTTTCBS--CEEEECTTCBHHHH-----HHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHS---------
T ss_pred CCCCCHHHhCCC--CceEeCCCCcHHHH-----HHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcC---------
Confidence 356689999998 89999999999999 9999986 47899999988999999999999852
Q ss_pred CCCCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHH
Q 025613 155 DNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNV 234 (250)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Di 234 (250)
....++.++|+++++++++++++.++++.|.+++.+.+||||++|+++|+||.+|+
T Consensus 216 ------------------------~~~~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Di 271 (473)
T 2zy9_A 216 ------------------------DPRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDV 271 (473)
T ss_dssp ------------------------CTTSBGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHH
T ss_pred ------------------------CCCCcHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhh
Confidence 23578999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhh
Q 025613 235 VRAALQIK 242 (250)
Q Consensus 235 l~~l~~~~ 242 (250)
++.+.+..
T Consensus 272 l~~i~~e~ 279 (473)
T 2zy9_A 272 LDVLEAEA 279 (473)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99987644
No 52
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=99.73 E-value=1.2e-18 Score=166.54 Aligned_cols=157 Identities=18% Similarity=0.122 Sum_probs=109.6
Q ss_pred CCCceeccccccCCceeEeCCCCchhcccchhHHHHHH-HcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCC
Q 025613 80 SGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILV-EKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM 158 (250)
Q Consensus 80 ~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~-~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~ 158 (250)
...++++|+|++++++.++++++++.|+ .+.|. +++++++||+|++|+++|+|+.+||++.+.........+..
T Consensus 450 ~~~~~V~diM~p~~~v~~v~~~~t~~e~-----~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~ 524 (632)
T 3org_A 450 SPEMTAREIMHPIEGEPHLFPDSEPQHI-----KGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIA 524 (632)
T ss_dssp CTTSBHHHHCBCTTTSCCBCSSSCHHHH-----HHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC---------
T ss_pred cccCcHHHHhhcCCCceEecCCCcHHHH-----HHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhcccccc
Confidence 3678999999954589999999999999 99999 79999999999999999999999999865432111000000
Q ss_pred ---CCCcccchhchHHHHHHHh-----------------ccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEE
Q 025613 159 ---FPEVDSTWKTFNEVQKLLS-----------------KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPV 218 (250)
Q Consensus 159 ---~~~~~~~~~~~~~~~~~~~-----------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpV 218 (250)
.....+.++--+....... .....++.++|+++|+++++++++.+|+++|.+++++++||
T Consensus 525 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpV 604 (632)
T 3org_A 525 GHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYV 604 (632)
T ss_dssp ----------------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEE
T ss_pred cccceeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEE
Confidence 0000000000000000000 01122488999999999999999999999999999999999
Q ss_pred EcCCCcEEEEEehHHHHHHHHhhh
Q 025613 219 VDADGKLVGIITRGNVVRAALQIK 242 (250)
Q Consensus 219 Vd~~g~~vGiIt~~Dil~~l~~~~ 242 (250)
+ ++|+++||||++||++++.+..
T Consensus 605 v-e~G~lvGIVT~~Dll~~~~~~~ 627 (632)
T 3org_A 605 T-ERGKLVGIVEREDVAYGYSNSL 627 (632)
T ss_dssp E-ETTEEEEEEEGGGTEECCCC--
T ss_pred E-ECCEEEEEEehhhHHHHHhhhH
Confidence 9 5899999999999987765543
No 53
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=99.72 E-value=1e-17 Score=156.97 Aligned_cols=130 Identities=18% Similarity=0.215 Sum_probs=113.2
Q ss_pred CCCCceeccccccCCceeEeCCC-CchhcccchhHHHHHHHcCCCeeEEEe-CCCcEEEEEehHHHHhhhhccCCCCCCC
Q 025613 79 SSGVYTVGDFMTTKEELHVVKPT-TTVDEAFVPTALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSISGSGRADN 156 (250)
Q Consensus 79 ~~~~~~v~~~m~~~~~~~~v~~~-~~v~~a~~~~~~~~~~~~~~~~~~Vvd-~~g~~~GiVt~~dL~~~~~~~~~~~~~~ 156 (250)
.+...+++++|++ +++++.++ +++.++ ++.|.+++++++||+| ++|+++|+||.+||++.+....
T Consensus 380 ~l~~~~V~diM~~--~~vtv~~~~~tv~ea-----~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~------ 446 (527)
T 3pc3_A 380 WWWSLAIAELELP--APPVILKSDATVGEA-----IALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMN------ 446 (527)
T ss_dssp TTTTSBGGGGCCC--CCSCCEETTCBHHHH-----HHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHC------
T ss_pred cccCCcHHHhCcC--CCeEEcCCCCcHHHH-----HHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhcc------
Confidence 4567899999998 89999999 999999 9999999999999999 7899999999999997643111
Q ss_pred CCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC----CcEEEEEehH
Q 025613 157 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD----GKLVGIITRG 232 (250)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~----g~~vGiIt~~ 232 (250)
.....++.++|+++++++++++++.+++++|.+.++ +||||++ |+++||||+.
T Consensus 447 ---------------------~~~~~~V~~im~~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~ 503 (527)
T 3pc3_A 447 ---------------------RQQSDPAIKALNKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKL 503 (527)
T ss_dssp ---------------------CCTTSBGGGGEETTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHH
T ss_pred ---------------------CcCCCcHHHHhcCCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHH
Confidence 234678999999999999999999999999976664 7999974 8999999999
Q ss_pred HHHHHHHhhhhh
Q 025613 233 NVVRAALQIKHA 244 (250)
Q Consensus 233 Dil~~l~~~~~~ 244 (250)
||++++.+....
T Consensus 504 Dll~~l~~~~~~ 515 (527)
T 3pc3_A 504 DVTTFIAAGKQK 515 (527)
T ss_dssp HHHHHHHTCCCC
T ss_pred HHHHHHHhcccc
Confidence 999999887643
No 54
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.72 E-value=3.9e-17 Score=139.89 Aligned_cols=167 Identities=20% Similarity=0.275 Sum_probs=114.7
Q ss_pred cceecCCCChhHHHHHhhhcCC-eeeeeCCCcccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcccchh
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPT 111 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~ 111 (250)
+.++..+.++.+++..+.+... .++...+..-..+ .+............+++++|.+ +++++++++++.++
T Consensus 11 ~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~~~~~G--iv~~~dl~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a---- 82 (282)
T 2yzq_A 11 PVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVG--IISVKRILVNPDEEQLAMLVKR--DVPVVKENDTLKKA---- 82 (282)
T ss_dssp CCCEESSCC------------CCEEEEECTTCCEEE--EEESSCC----------CCCBS--CCCEEETTSBHHHH----
T ss_pred CeEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEE--EEEHHHHHhhhccCCHHHHcCC--CCcEECCCCcHHHH----
Confidence 5567778888888888866554 4554442110000 0000111123345689999998 78999999999999
Q ss_pred HHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh-hhhccCCCCCCCCCCCCcccchhchHHHHHHHhccCCCcccccccC
Q 025613 112 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA-LDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTP 190 (250)
Q Consensus 112 ~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 190 (250)
++.|.+++...+||+|++|+++|+||..|+.+ .+.... .....++.++|.+
T Consensus 83 -~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~---------------------------~~~~~~v~~~m~~ 134 (282)
T 2yzq_A 83 -AKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSE---------------------------KYKGVEIEPYYQR 134 (282)
T ss_dssp -HHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCS---------------------------GGGGCBSTTTSBS
T ss_pred -HHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhccC---------------------------CcccCcHHHHhCC
Confidence 99999999999999998899999999999997 532110 1124678899999
Q ss_pred CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHH
Q 025613 191 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 235 (250)
Q Consensus 191 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil 235 (250)
+++++++++++.++++.|.+++++.+||+|++|+++|+||..|++
T Consensus 135 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~ 179 (282)
T 2yzq_A 135 YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLL 179 (282)
T ss_dssp CCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGG
T ss_pred CCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHh
Confidence 999999999999999999999999999999889999999999999
No 55
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=99.71 E-value=4.9e-17 Score=142.93 Aligned_cols=178 Identities=16% Similarity=0.160 Sum_probs=131.3
Q ss_pred ceecCCCChhHHHHHhhhcCC-eeeeeCC--C-----cc--c-ccccccccC--CCCCCCCCceecc---ccccCCceeE
Q 025613 34 PCLLLSRPGCRVFSVLATSSD-RVSALRR--S-----SA--V-FASGTLTAN--SAAPSSGVYTVGD---FMTTKEELHV 97 (250)
Q Consensus 34 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~-----~~--~-~~~~~~~~~--~~~~~~~~~~v~~---~m~~~~~~~~ 97 (250)
.++..+.++.+++..|.+... .++...+ . .. . ..+...... .........++++ +|.+ ++.+
T Consensus 120 ~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~v~~l~~~m~~--~~~~ 197 (334)
T 2qrd_G 120 IYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKETAMLRVPLNQMTIGTWS--NLAT 197 (334)
T ss_dssp CCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCGGGGGCCCBGGGSSCSBCS--SCCC
T ss_pred eeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhccchhhhhCcHHHhCCcccC--CceE
Confidence 566678889999988876654 3333221 1 10 0 001000000 0001122457888 4877 8999
Q ss_pred eCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHHHHh
Q 025613 98 VKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS 177 (250)
Q Consensus 98 v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (250)
+.+++++.++ ++.|.+++++++||+|++|+++|+|+..||++++.... .
T Consensus 198 v~~~~~~~~~-----~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~--------------------------~ 246 (334)
T 2qrd_G 198 ASMETKVYDV-----IKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGD--------------------------Y 246 (334)
T ss_dssp BCTTSBHHHH-----HHHHHHHTCSEEEEECTTCBEEEEEETHHHHHHHTTSC--------------------------G
T ss_pred ECCCCcHHHH-----HHHHHHcCCcEEEEEcCCCcEEEEEEHHHHHHHhhccc--------------------------c
Confidence 9999999999 99999999999999998899999999999997642110 0
Q ss_pred ccCCCcccccccC------CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhhhhh
Q 025613 178 KTNGKMVGDLMTP------APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHA 244 (250)
Q Consensus 178 ~~~~~~v~~im~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~~~~ 244 (250)
.....++.++|.+ +++++.+++++.+|++.|.+++++++||+|++|+++|+||+.||++++......
T Consensus 247 ~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~dil~~~~~~~~~ 319 (334)
T 2qrd_G 247 SNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDKTT 319 (334)
T ss_dssp GGGGSBHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEHHHHHHHHHSCCC-
T ss_pred ccccCcHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHHhcccc
Confidence 1124678889984 799999999999999999999999999999889999999999999998876543
No 56
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=99.71 E-value=4.4e-17 Score=151.91 Aligned_cols=118 Identities=25% Similarity=0.441 Sum_probs=107.3
Q ss_pred eeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeC--CCcEEEEEehHHHHhhhhccCCCCCCCCCCCC
Q 025613 84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSISGSGRADNSMFPE 161 (250)
Q Consensus 84 ~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~--~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~ 161 (250)
+.++.|.. +++++.+++++.++ +++|.+++++++||+|+ +|+++|+|+.+||+..
T Consensus 114 ~~~~~m~~--d~v~l~~~~tv~ea-----~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~---------------- 170 (511)
T 3usb_A 114 RSESGVIS--DPFFLTPEHQVYDA-----EHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFI---------------- 170 (511)
T ss_dssp TSSSCSSS--SCCCBCTTSBHHHH-----HHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTC----------------
T ss_pred cccccccc--CCEEECCCCCHHHH-----HHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhh----------------
Confidence 45566777 88999999999999 99999999999999998 8999999999999741
Q ss_pred cccchhchHHHHHHHhccCCCcccccccC-CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 162 VDSTWKTFNEVQKLLSKTNGKMVGDLMTP-APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
.....++.++|++ +++++++++++.+++++|.+++++.+||||++|+++|+||.+||++.+..
T Consensus 171 ----------------~~~~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~ 234 (511)
T 3usb_A 171 ----------------QDYSIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEF 234 (511)
T ss_dssp ----------------CCSSSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred ----------------ccCCCcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhc
Confidence 2346789999997 89999999999999999999999999999999999999999999999865
No 57
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=99.66 E-value=4.9e-16 Score=136.39 Aligned_cols=178 Identities=20% Similarity=0.271 Sum_probs=128.1
Q ss_pred ccceecCCCChhHHHHHhhhcCC-eeeeeCC---Cc--cc-ccccccccC-----CCCCCCCCceeccc--cc-cCCcee
Q 025613 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRR---SS--AV-FASGTLTAN-----SAAPSSGVYTVGDF--MT-TKEELH 96 (250)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~---~~--~~-~~~~~~~~~-----~~~~~~~~~~v~~~--m~-~~~~~~ 96 (250)
.+.++..+.++.+++..|.+... .++...+ .. .. ..+...... .........+++++ |. . +++
T Consensus 127 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~~v~~~~--~~~ 204 (330)
T 2v8q_E 127 PLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYA--NIA 204 (330)
T ss_dssp CCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCSSSCCGGGGSBHHHHTCSBCS--SCC
T ss_pred CceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhccCchhhhcCCHHHhcccCcC--Cce
Confidence 35667778899999988865554 3443332 11 11 111000000 00001112344554 43 4 789
Q ss_pred EeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHHHH
Q 025613 97 VVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLL 176 (250)
Q Consensus 97 ~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (250)
++.+++++.++ ++.|.+++++++||+|++|+++|+|+..|++++....+.
T Consensus 205 ~v~~~~~l~~~-----~~~m~~~~~~~~~Vvd~~~~l~Giit~~dl~~~~~~~~~------------------------- 254 (330)
T 2v8q_E 205 MVRTTTPVYVA-----LGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTY------------------------- 254 (330)
T ss_dssp CEETTCBHHHH-----HHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCC-------------------------
T ss_pred EECCCCCHHHH-----HHHHHHcCCCeEEEECCCCcEEEEEEHHHHHHHHhcccc-------------------------
Confidence 99999999999 999999999999999988999999999999976432110
Q ss_pred hccCCCcccccc------cCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhhh
Q 025613 177 SKTNGKMVGDLM------TPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 242 (250)
Q Consensus 177 ~~~~~~~v~~im------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~~ 242 (250)
.....++.++| .++++++++++++.+|++.|.+++++++||+|++|+++|+||..||++++.+..
T Consensus 255 -~~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~Dil~~~~~~~ 325 (330)
T 2v8q_E 255 -NNLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVLTG 325 (330)
T ss_dssp -CCCSSBHHHHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHSSC
T ss_pred -ccccCcHHHHHhccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhhc
Confidence 01134666666 578999999999999999999999999999998899999999999999987754
No 58
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=99.65 E-value=2.9e-17 Score=152.59 Aligned_cols=117 Identities=22% Similarity=0.346 Sum_probs=93.1
Q ss_pred eeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcc
Q 025613 84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 163 (250)
Q Consensus 84 ~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~ 163 (250)
+++++|.. +++++.+++++.++ ++.|.+++++++||+|++|+++|+||.+||+..
T Consensus 90 ~~~~~m~~--d~v~v~~~~tv~ea-----~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~------------------ 144 (496)
T 4fxs_A 90 IFEAGVVT--HPVTVRPEQTIADV-----MELTHYHGFAGFPVVTENNELVGIITGRDVRFV------------------ 144 (496)
T ss_dssp HCCC--CB--CCCCBCSSSBHHHH-----HHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTC------------------
T ss_pred cccccccc--CceEECCCCCHHHH-----HHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhc------------------
Confidence 56788988 89999999999999 999999999999999988999999999999732
Q ss_pred cchhchHHHHHHHhccCCCccccccc-C-CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613 164 STWKTFNEVQKLLSKTNGKMVGDLMT-P-APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 239 (250)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~v~~im~-~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~ 239 (250)
.....++.++|+ + +++++++++++.+++++|.+++++.+||||++|+++|+||++||++...
T Consensus 145 --------------~~~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~~ 208 (496)
T 4fxs_A 145 --------------TDLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAES 208 (496)
T ss_dssp --------------CCTTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----CC
T ss_pred --------------ccCCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhhc
Confidence 234678999998 4 5899999999999999999999999999999999999999999998743
No 59
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=99.64 E-value=5.2e-16 Score=136.27 Aligned_cols=145 Identities=19% Similarity=0.232 Sum_probs=110.9
Q ss_pred CCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCCCCC
Q 025613 80 SGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSM 158 (250)
Q Consensus 80 ~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~~~~ 158 (250)
+...+++++|+++.++.++++++++.+| ++.|.+++++++||++++ ++++|+|+..|++..+........ ..
T Consensus 32 l~~~~v~dim~p~~~v~~v~~~~~v~~a-----~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~~--~~ 104 (330)
T 2v8q_E 32 MKSHRCYDLIPTSSKLVVFDTSLQVKKA-----FFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSAL--VQ 104 (330)
T ss_dssp HHHSBGGGGSCSEEEEEEEETTSBHHHH-----HHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHT--TT
T ss_pred HHcCcHhhhccCCCcEEEEeCCCcHHHH-----HHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhccc--cc
Confidence 3456899999655589999999999999 999999999999999987 789999999999975421100000 00
Q ss_pred CCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEehHHHHHH
Q 025613 159 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA-DGKLVGIITRGNVVRA 237 (250)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~-~g~~vGiIt~~Dil~~ 237 (250)
...+.. . .+... ...++++|.++++++++++++.+|++.|.+++.+.+||+|+ +|+++|+||.+|++++
T Consensus 105 ~~~l~~-~-~~~~~--------~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~ 174 (330)
T 2v8q_E 105 IYELEE-H-KIETW--------REVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKF 174 (330)
T ss_dssp CCCGGG-C-BHHHH--------HHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHH
T ss_pred hhHHhh-c-cHHHH--------HHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHH
Confidence 000000 0 00000 01345789999999999999999999999999999999998 8999999999999998
Q ss_pred HHhh
Q 025613 238 ALQI 241 (250)
Q Consensus 238 l~~~ 241 (250)
+...
T Consensus 175 ~~~~ 178 (330)
T 2v8q_E 175 LKLF 178 (330)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8653
No 60
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=99.63 E-value=3.4e-17 Score=152.30 Aligned_cols=190 Identities=26% Similarity=0.369 Sum_probs=37.7
Q ss_pred CeeeeccccccccccCCCCCCCCCCcccccccceecCCC---ChhHHHHHhhhcCC-eeeeeCCCcccccccccccCCCC
Q 025613 2 DSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSR---PGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAA 77 (250)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 77 (250)
|-+++|..+.+.-.+...-....+ ++...+|.+.... ...+....+.+... .+.....++......
T Consensus 21 dvll~p~~s~~~p~~v~~~~eLt~--~~~l~iP~is~~m~~v~~~~lA~al~~~GglG~i~~~~~~e~~~~~-------- 90 (494)
T 1vrd_A 21 DVLLVPQYSEVLPKDVKIDTRLTR--QIRINIPLVSAAMDTVTEAALAKALAREGGIGIIHKNLTPDEQARQ-------- 90 (494)
T ss_dssp GEEECCCCCCCCGGGSCCCEESSS--SCEESSSEEECCCTTTCSHHHHHHHHTTTCEEEECSSSCHHHHHHH--------
T ss_pred cEEeccccccCCCCceEEEehhhC--CCccCceeEecchHHHhHHHHHHHHHHcCCceEEecCCChHHHHHH--------
Confidence 445667777766666555555544 5666777765532 12234444444433 112111111111110
Q ss_pred CCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCC
Q 025613 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 157 (250)
Q Consensus 78 ~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~ 157 (250)
.....+++++|.+ +++++++++++.++ ++.|.+++++++||+|++|+++|+||.+||+..
T Consensus 91 -v~~v~~~~~iM~~--~~~~v~~~~tv~ea-----~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~------------ 150 (494)
T 1vrd_A 91 -VSIVKKTENGIIY--DPITVTPDMTVKEA-----IDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFE------------ 150 (494)
T ss_dssp -HHHHHTC------------------------------------------------------------------------
T ss_pred -HHhhhhHhhcCcc--CCeEECCCCCHHHH-----HHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhh------------
Confidence 0112356788998 89999999999999 999999999999999988999999999999852
Q ss_pred CCCCcccchhchHHHHHHHhccCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHH
Q 025613 158 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 235 (250)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil 235 (250)
.....++.++|++ +++++++++++.+++++|.+++++.+||||++|+++|+||++|++
T Consensus 151 --------------------~~~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll 210 (494)
T 1vrd_A 151 --------------------KNLSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIM 210 (494)
T ss_dssp ------------------------------------------------------------------------------CH
T ss_pred --------------------cCCCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHH
Confidence 1135689999998 899999999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 025613 236 RAALQI 241 (250)
Q Consensus 236 ~~l~~~ 241 (250)
+.+...
T Consensus 211 ~~~~~~ 216 (494)
T 1vrd_A 211 SVIEHP 216 (494)
T ss_dssp HHHTCT
T ss_pred hhhccc
Confidence 987644
No 61
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=99.63 E-value=2.1e-15 Score=140.00 Aligned_cols=118 Identities=28% Similarity=0.471 Sum_probs=108.5
Q ss_pred eeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEe--CCCcEEEEEehHHHHhhhhccCCCCCCCCCCCC
Q 025613 84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVID--DDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 161 (250)
Q Consensus 84 ~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd--~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~ 161 (250)
.++++|++ ++.++++++++.++ ++.|.++++.++||+| ++++++|+|+.+||+..
T Consensus 91 ~~~~im~~--~~~~v~~~~tv~ea-----~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~---------------- 147 (491)
T 1zfj_A 91 RSENGVII--DPFFLTPEHKVSEA-----EELMQRYRISGVPIVETLANRKLVGIITNRDMRFI---------------- 147 (491)
T ss_dssp HHTTTTSS--SCCCBCSSSBHHHH-----HHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHC----------------
T ss_pred hHHhcCcC--CCeEECCCCcHHHH-----HHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhh----------------
Confidence 46789998 89999999999999 9999999999999999 78999999999999853
Q ss_pred cccchhchHHHHHHHhccCCCcccccccC-CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 162 VDSTWKTFNEVQKLLSKTNGKMVGDLMTP-APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
.....++.++|++ +++++++++++.++++.|.+++.+.+||||++|+++|+||++||++.+.+
T Consensus 148 ----------------~~~~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~ 211 (491)
T 1zfj_A 148 ----------------SDYNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF 211 (491)
T ss_dssp ----------------SCSSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred ----------------ccCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhc
Confidence 1235789999998 89999999999999999999999999999999999999999999999875
No 62
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=99.63 E-value=1.5e-15 Score=132.79 Aligned_cols=180 Identities=17% Similarity=0.176 Sum_probs=129.3
Q ss_pred cccceecCCCChhHHHHHhhhcCC-eeeeeCCCc-----cc-cccccccc-----C----CCCCCCCC------ceeccc
Q 025613 31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS-----AV-FASGTLTA-----N----SAAPSSGV------YTVGDF 88 (250)
Q Consensus 31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~-----~~-~~~~~~~~-----~----~~~~~~~~------~~v~~~ 88 (250)
.++.++..+.++.+++..|.+... .++...+.. .. ..+..... . ........ +++.++
T Consensus 40 ~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~~l~~~~~~~~~~~~l~~~~~~~v~~i~~~~~~ 119 (323)
T 3t4n_C 40 YRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFELVDKLQLDGLKDIERALGV 119 (323)
T ss_dssp EEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHCGGGGGGGGGCBHHHHHHHHHHTTC
T ss_pred CcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHhCC
Confidence 345678889999999999987776 455544211 00 00000000 0 00000011 123344
Q ss_pred cccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCc-----EEEEEehHHHHhhhhccCCCCCCCCCCCCcc
Q 025613 89 MTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWK-----LVGLVSDYDLLALDSISGSGRADNSMFPEVD 163 (250)
Q Consensus 89 m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~-----~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~ 163 (250)
|.+ +++++++++++.++ ++.|.+++++++||+|++|. ++|+||.+|+++++.....
T Consensus 120 ~~~--~~v~v~~~~~l~~a-----~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~------------ 180 (323)
T 3t4n_C 120 DQL--DTASIHPSRPLFEA-----CLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCR------------ 180 (323)
T ss_dssp ------CCCBCTTSBHHHH-----HHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCG------------
T ss_pred CCC--CceEeCCCCcHHHH-----HHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCC------------
Confidence 566 78999999999999 99999999999999998775 9999999999976432110
Q ss_pred cchhchHHHHHHHhccCCCccccc---ccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 164 STWKTFNEVQKLLSKTNGKMVGDL---MTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~v~~i---m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
.......++.++ |.++++++.+++++.+|++.|.+++++.+||+|++|+++|+||..|+++++..
T Consensus 181 ------------~~~~~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~ 248 (323)
T 3t4n_C 181 ------------ETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKG 248 (323)
T ss_dssp ------------GGGGCCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHHT
T ss_pred ------------chhhhhCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHhh
Confidence 012345688999 98899999999999999999999999999999988999999999999998765
Q ss_pred h
Q 025613 241 I 241 (250)
Q Consensus 241 ~ 241 (250)
.
T Consensus 249 ~ 249 (323)
T 3t4n_C 249 G 249 (323)
T ss_dssp T
T ss_pred c
Confidence 4
No 63
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=99.62 E-value=5.2e-17 Score=151.30 Aligned_cols=119 Identities=28% Similarity=0.321 Sum_probs=2.3
Q ss_pred eccc-cccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC---CcEEEEEehHHHHhhhhccCCCCCCCCCCC
Q 025613 85 VGDF-MTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRADNSMFP 160 (250)
Q Consensus 85 v~~~-m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~---g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~ 160 (250)
..++ |++ +++++++++++.++ ++.|.+++++++||+|++ |+++|+|+.+||+.. .
T Consensus 98 ~~e~gM~~--~~~~v~~~~tv~ea-----l~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~----~---------- 156 (503)
T 1me8_A 98 NFKAGFVV--SDSNVKPDQTFADV-----LAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID----L---------- 156 (503)
T ss_dssp TTTC----------------------------------------------------------------------------
T ss_pred hcccCccc--CCeEECCCCcHHHH-----HHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh----h----------
Confidence 3455 888 89999999999999 999999999999999987 899999999999852 0
Q ss_pred CcccchhchHHHHHHHhccCCCcccccccCC--CeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613 161 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPA--PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 238 (250)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l 238 (250)
.....++.++|+++ ++++++++++.+|+++|.+++++.+||||++|+++|+||.+||++.+
T Consensus 157 -----------------~~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~ 219 (503)
T 1me8_A 157 -----------------TQTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQ 219 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------ccccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhh
Confidence 12356899999987 99999999999999999999999999999999999999999999988
Q ss_pred Hhh
Q 025613 239 LQI 241 (250)
Q Consensus 239 ~~~ 241 (250)
...
T Consensus 220 ~~~ 222 (503)
T 1me8_A 220 VCH 222 (503)
T ss_dssp --C
T ss_pred hcc
Confidence 654
No 64
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=99.61 E-value=5.6e-17 Score=150.56 Aligned_cols=118 Identities=30% Similarity=0.409 Sum_probs=3.8
Q ss_pred ceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCc
Q 025613 83 YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 162 (250)
Q Consensus 83 ~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~ 162 (250)
.+++++|.. +++++++++++.++ +++|.+++++++||+| +|+++|+||.+||+..
T Consensus 88 k~~~~~m~~--~~v~v~~~~tv~ea-----~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~~~----------------- 142 (490)
T 4avf_A 88 KKHETAIVR--DPVTVTPSTKIIEL-----LQMAREYGFSGFPVVE-QGELVGIVTGRDLRVK----------------- 142 (490)
T ss_dssp HHCCC---------------------------------------------------------------------------
T ss_pred cccccCccc--CceEeCCCCcHHHH-----HHHHHHhCCCEEEEEE-CCEEEEEEEhHHhhhc-----------------
Confidence 357888988 89999999999999 9999999999999999 8899999999999732
Q ss_pred ccchhchHHHHHHHhccCCCccccccc-C-CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 163 DSTWKTFNEVQKLLSKTNGKMVGDLMT-P-APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~v~~im~-~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
.....++.++|+ + +++++++++++.+|+++|.+++++.+||||++|+++|+||++||++....
T Consensus 143 ---------------~~~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~ 207 (490)
T 4avf_A 143 ---------------PNAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKTY 207 (490)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred ---------------cccCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhccC
Confidence 223578999999 4 69999999999999999999999999999999999999999999998643
No 65
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=99.58 E-value=1.1e-14 Score=127.76 Aligned_cols=144 Identities=22% Similarity=0.295 Sum_probs=106.2
Q ss_pred CceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCCCCCCC
Q 025613 82 VYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFP 160 (250)
Q Consensus 82 ~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~ 160 (250)
..+++++|+++.+++++++++++.++ ++.|.+++++++||+|++ |+++|+|+.+|++.++..............
T Consensus 21 ~~~v~dim~~~~~vv~v~~~~tv~~a-----~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~~~~~~~~~~~ 95 (334)
T 2qrd_G 21 SRTSYDVLPTSFRLIVFDVTLFVKTS-----LSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIA 95 (334)
T ss_dssp HSBGGGGSCSEEEEEEEETTSBHHHH-----HHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGG
T ss_pred cCchhhhCCCCCCEEEEcCCCCHHHH-----HHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHhhccCCccHHH
Confidence 46899999987678999999999999 999999999999999986 899999999999976421100000000000
Q ss_pred CcccchhchHHHHHHHhccCCCcccccccCCC--eEecCCCCHHHHHHHHHHcCCCEEEEEcCCCc-----EEEEEehHH
Q 025613 161 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAARLLLETKYRRLPVVDADGK-----LVGIITRGN 233 (250)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~--~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~-----~vGiIt~~D 233 (250)
.+. ...+...... ++++|.+++ +++.+++++.++++.|.+.+.+++||+|++|. ++|+||.+|
T Consensus 96 ~~~--~~~~~~i~~~--------l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~d 165 (334)
T 2qrd_G 96 EID--KFRLLGLREV--------ERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYR 165 (334)
T ss_dssp GGG--SCBHHHHHHH--------HHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHH
T ss_pred HHh--hhchhhHHHH--------HHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHH
Confidence 000 0001111111 134576667 89999999999999999999999999997654 999999999
Q ss_pred HHHHHHh
Q 025613 234 VVRAALQ 240 (250)
Q Consensus 234 il~~l~~ 240 (250)
+++++..
T Consensus 166 l~~~~~~ 172 (334)
T 2qrd_G 166 ILKFISM 172 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998865
No 66
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=99.57 E-value=2.2e-16 Score=145.08 Aligned_cols=163 Identities=26% Similarity=0.331 Sum_probs=21.6
Q ss_pred ccccccceecCC---CChhHHHHHhhhcCC-eeeeeCCCcccccccccccCCCCCCCCCceeccccccCCceeEeCCCCc
Q 025613 28 SFALQLPCLLLS---RPGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTT 103 (250)
Q Consensus 28 ~~~~~~~~~~~~---~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~ 103 (250)
++.+.+|.+.+. -+-.+..-+|.+... -++.+.-++-.+.+..... .+-+..|.. +++++.|+.|
T Consensus 88 ~i~L~iPlvSA~MDTVTe~~MAIamAr~GGiGvIH~n~sie~Qa~~V~~V---------Kr~e~g~i~--dPvtl~P~~T 156 (556)
T 4af0_A 88 NIVLNTPFLSSPMDTVTEDRMAIALALHGGLGIIHHNCSAEEQAAMVRRV---------KKYENGFIT--DPLCLGPDAT 156 (556)
T ss_dssp TEEESSCEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHHHHHHHHHHH---------HHCCC----------------
T ss_pred CcEeCCCEEecCcccccCHHHHHHHHHCCCeEEEcCCCCHHHHHHHHHHH---------HhcccCccC--CCeEcCCCCC
Confidence 566777877662 223345555666655 3333333322222211100 012234555 7899999999
Q ss_pred hhcccchhHHHHHHHcCCCeeEEEeC---CCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHHHHhccC
Q 025613 104 VDEAFVPTALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTN 180 (250)
Q Consensus 104 v~~a~~~~~~~~~~~~~~~~~~Vvd~---~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (250)
+.++ +++|.++++.++||+++ +|+++|+||.+|+.. ...
T Consensus 157 v~da-----~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf---------------------------------~d~ 198 (556)
T 4af0_A 157 VGDV-----LEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQF---------------------------------QDA 198 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHH-----HHHHHHhCCCccccccccCcCCEEEEEEecccccc---------------------------------ccc
Confidence 9999 99999999999999986 589999999999873 123
Q ss_pred CCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613 181 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 239 (250)
Q Consensus 181 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~ 239 (250)
..++.++|++++++++.+.++++|.++|.++++..+||||++|+++|+||++|+++...
T Consensus 199 ~~~V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~~ 257 (556)
T 4af0_A 199 ETPIKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQN 257 (556)
T ss_dssp -----------------------------------------------------------
T ss_pred ceEhhhhcccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhhh
Confidence 57899999999999999999999999999999999999999999999999999988654
No 67
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=99.51 E-value=3.8e-16 Score=145.87 Aligned_cols=119 Identities=29% Similarity=0.460 Sum_probs=71.8
Q ss_pred eeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeC---CCcEEEEEehHHHHhhhhccCCCCCCCCCCC
Q 025613 84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFP 160 (250)
Q Consensus 84 ~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~---~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~ 160 (250)
+++++|.+ +++++.+++++.++ ++.|.+++++++||+|+ +|+++|+||.+|+.....
T Consensus 109 ~~~~im~~--~~~~v~~~~tv~ea-----~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~------------- 168 (514)
T 1jcn_A 109 NFEQGFIT--DPVVLSPSHTVGDV-----LEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAE------------- 168 (514)
T ss_dssp TCCTTSCS--SCCCCCC----------------------CEESCC--------CCEECTTTTC-----------------
T ss_pred hhhhcccc--CCEEECCCCCHHHH-----HHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhh-------------
Confidence 57789987 78999999999999 99999999999999997 589999999999975310
Q ss_pred CcccchhchHHHHHHHhccCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613 161 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 238 (250)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l 238 (250)
.....++.++|++ +++++++++++.+++++|.+++.+.+||||++|+++|+||++||++.+
T Consensus 169 -----------------~~~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~ 231 (514)
T 1jcn_A 169 -----------------KDHTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNR 231 (514)
T ss_dssp -----------------------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCC
T ss_pred -----------------ccCCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHh
Confidence 1235689999998 899999999999999999999999999999999999999999998765
Q ss_pred H
Q 025613 239 L 239 (250)
Q Consensus 239 ~ 239 (250)
.
T Consensus 232 ~ 232 (514)
T 1jcn_A 232 D 232 (514)
T ss_dssp C
T ss_pred h
Confidence 4
No 68
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=99.42 E-value=1.3e-14 Score=134.55 Aligned_cols=113 Identities=36% Similarity=0.637 Sum_probs=1.5
Q ss_pred eccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCccc
Q 025613 85 VGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 164 (250)
Q Consensus 85 v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~ 164 (250)
.++.|.. ++.++.+++++.++ ++.|.++++.++||+|+ ++++|+|+.+||+.
T Consensus 95 ~~~~m~~--~~~~v~~~~tv~ea-----~~~~~~~~~~~~pVvd~-~~lvGivt~~Dl~~-------------------- 146 (486)
T 2cu0_A 95 AERLIVE--DVITIAPDETVDFA-----LFLMEKHGIDGLPVVED-EKVVGIITKKDIAA-------------------- 146 (486)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred hhhcccc--CceEECCCCCHHHH-----HHHHHHcCCcEEEEEEC-CEEEEEEEHHHhcc--------------------
Confidence 4567887 89999999999999 99999999999999997 89999999999973
Q ss_pred chhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613 165 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 239 (250)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~ 239 (250)
....++.++|+++++++++++++.+++++|.+++++.+||||++|+++|+||++||++.+.
T Consensus 147 --------------~~~~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~ 207 (486)
T 2cu0_A 147 --------------REGKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKK 207 (486)
T ss_dssp --------------------------------------------------------------------------C
T ss_pred --------------CCCCCHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhh
Confidence 1246799999988999999999999999999999999999999999999999999999864
No 69
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.27 E-value=1.9e-11 Score=101.16 Aligned_cols=162 Identities=13% Similarity=0.071 Sum_probs=83.9
Q ss_pred CCCCCCCcccccccceecCCCChhHHHHHhhhcCC-eeeeeCCCcccccccccccCCCCCCCCCceeccccccCCceeEe
Q 025613 20 AGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVV 98 (250)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v 98 (250)
+|..+...-+...++++..+.++.++...|.+... .++...+..-+.+- +............+++++|++ +++++
T Consensus 10 ~~~~~~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Gi--vt~~dl~~~~~~~~v~~im~~--~~~~v 85 (213)
T 1vr9_A 10 HHHMKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGV--VNKEDLLDLDLDSSVFNKVSL--PDFFV 85 (213)
T ss_dssp ---CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEE--EEGGGGTTSCTTSBSGGGCBC--TTCCE
T ss_pred ccccCHHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEE--EEHHHHHhhcCCCcHHHHccC--CCEEE
Confidence 34444433444557788889999999999987765 55554422111100 000001112235679999998 89999
Q ss_pred CCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHHHHhc
Q 025613 99 KPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 178 (250)
Q Consensus 99 ~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (250)
.+++++.++ ++.|.++++..+||+|++|+++|+||..|+++.....
T Consensus 86 ~~~~~l~~a-----~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~----------------------------- 131 (213)
T 1vr9_A 86 HEEDNITHA-----LLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEA----------------------------- 131 (213)
T ss_dssp ETTSBHHHH-----HHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHS-----------------------------
T ss_pred CCCCcHHHH-----HHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHH-----------------------------
Confidence 999999999 9999999999999999889999999999999753211
Q ss_pred cCCCcccccccCC-CeEecCCCCHHHHHHHHHHcCCCEEEEEcCC
Q 025613 179 TNGKMVGDLMTPA-PVVVRETTNLEDAARLLLETKYRRLPVVDAD 222 (250)
Q Consensus 179 ~~~~~v~~im~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~ 222 (250)
....+.+.+- +.+.....++.++.+.|.+.+++.++|++.+
T Consensus 132 ---~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~~ 173 (213)
T 1vr9_A 132 ---LAMDVPGIRFSVLLEDKPGELRKVVDALALSNINILSVITTR 173 (213)
T ss_dssp ---CC----------------------------------------
T ss_pred ---hcCCCCcEEEEEEeCCCCccHHHHHHHHHHCCCcEEEEEEEe
Confidence 1112223221 1111334459999999999999999988644
No 70
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=99.22 E-value=1.8e-11 Score=83.70 Aligned_cols=69 Identities=28% Similarity=0.426 Sum_probs=57.3
Q ss_pred eeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHH
Q 025613 95 LHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQK 174 (250)
Q Consensus 95 ~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (250)
++++.+++++.+| ++.|.+++++++||+| +|+++|+||.+||++.+...+.
T Consensus 2 ~vtv~p~~tv~ea-----~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~~~~----------------------- 52 (70)
T 3ghd_A 2 AIVVQPKDTVDRV-----AKILSRNKAGSAVVME-GDEILGVVTERDILDKVVAKGK----------------------- 52 (70)
T ss_dssp EEEECTTCBHHHH-----HHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTTTTC-----------------------
T ss_pred CEEECCCCcHHHH-----HHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHhcCC-----------------------
Confidence 6789999999999 9999999999999998 5899999999999865332221
Q ss_pred HHhccCCCcccccccCCCeEe
Q 025613 175 LLSKTNGKMVGDLMTPAPVVV 195 (250)
Q Consensus 175 ~~~~~~~~~v~~im~~~~~~v 195 (250)
.....+++++|+++|++|
T Consensus 53 ---~~~~~~V~~iMt~~~iTV 70 (70)
T 3ghd_A 53 ---NPKEVKVEEIMTKNPVKI 70 (70)
T ss_dssp ---CGGGCBGGGTCEECTTCC
T ss_pred ---CcccCCHHHhcCCCCeEC
Confidence 223568999999988765
No 71
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.03 E-value=2.5e-10 Score=90.70 Aligned_cols=60 Identities=37% Similarity=0.583 Sum_probs=56.0
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613 179 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 238 (250)
Q Consensus 179 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l 238 (250)
....+++++|+++++++.+++++.+|++.|.+++++.+||+|++|+++|+||..||++.+
T Consensus 15 l~~~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~ 74 (170)
T 4esy_A 15 IRQVPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGS 74 (170)
T ss_dssp HHTSBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGT
T ss_pred HcCCCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHH
Confidence 346899999999999999999999999999999999999999999999999999998653
No 72
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=98.99 E-value=8.3e-10 Score=74.44 Aligned_cols=69 Identities=28% Similarity=0.426 Sum_probs=56.7
Q ss_pred eeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHH
Q 025613 95 LHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQK 174 (250)
Q Consensus 95 ~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (250)
+.++.+++++.++ ++.|.+++++.+||+|+ |+++|+||.+||++++...+.
T Consensus 2 ~~~v~~~~~~~~a-----~~~m~~~~~~~~pV~d~-~~l~Givt~~dl~~~~~~~~~----------------------- 52 (70)
T 3fio_A 2 AIVVQPKDTVDRV-----AKILSRNKAGSAVVMEG-DEILGVVTERDILDKVVAKGK----------------------- 52 (70)
T ss_dssp EEEECTTCBHHHH-----HHHHHHTTCSEEEEEET-TEEEEEEEHHHHHHHTTTTTC-----------------------
T ss_pred CeEECCCCcHHHH-----HHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHHcCC-----------------------
Confidence 5789999999999 99999999999999997 899999999999986432220
Q ss_pred HHhccCCCcccccccCCCeEe
Q 025613 175 LLSKTNGKMVGDLMTPAPVVV 195 (250)
Q Consensus 175 ~~~~~~~~~v~~im~~~~~~v 195 (250)
.....++.++|+++++++
T Consensus 53 ---~~~~~~v~~im~~~~~~v 70 (70)
T 3fio_A 53 ---NPKEVKVEEIMTKNPVKI 70 (70)
T ss_dssp ---CGGGCBGGGTCEECTTCC
T ss_pred ---CcccCCHHHhcCCCCeEC
Confidence 123578999999877653
No 73
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=98.84 E-value=1.5e-08 Score=76.28 Aligned_cols=106 Identities=15% Similarity=0.153 Sum_probs=77.7
Q ss_pred ccceecCCCChhHHHHHhhhcCC-eeeeeCCC-c--c-cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhc
Q 025613 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRS-S--A-VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE 106 (250)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~-~--~-~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~ 106 (250)
.++.+..+.++.++...|.+... .++...+. . . ...+... .. ........+++++|.+ ++.++.+++++.+
T Consensus 14 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~-~~-~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~ 89 (128)
T 3gby_A 14 DYPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLSRLLE-GR-KGWPTVKEKLGEELLE--TVRSYRPGEQLFD 89 (128)
T ss_dssp CSCCEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHT-TC-SSSCCTTCBCCGGGCB--CCCCBCTTSBGGG
T ss_pred CcceECCCCCHHHHHHHHHHCCCcEEEEEECCEEEEEEEHHHHHH-HH-hhCCcccCcHHHHccC--CCcEECCCCCHHH
Confidence 36677889999999999887654 44443331 1 1 1111100 01 1112223679999998 8999999999999
Q ss_pred ccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613 107 AFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 146 (250)
Q Consensus 107 a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~ 146 (250)
+ ++.|.+++...+||+|++|+++|+||..|+++++
T Consensus 90 ~-----~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l 124 (128)
T 3gby_A 90 N-----LISVAAAKCSVVPLADEDGRYEGVVSRKRILGFL 124 (128)
T ss_dssp S-----HHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred H-----HHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHH
Confidence 9 9999999999999999999999999999999764
No 74
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=98.83 E-value=1.8e-08 Score=76.11 Aligned_cols=102 Identities=14% Similarity=0.120 Sum_probs=76.0
Q ss_pred ccceecCCCChhHHHHHhhhcCC-eeeeeCCC-c----c-cccccccccCCCCCCCCCceeccccccCCceeEeCCCCch
Q 025613 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRS-S----A-VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV 104 (250)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~-~----~-~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v 104 (250)
.+.++..+.++.++...|.+... .++...+. . . ...+... .. .....+++++|++ ++++.+++++
T Consensus 16 ~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~-~~----~~~~~~v~~~m~~---~~~v~~~~~l 87 (129)
T 3jtf_A 16 RMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLR-YM----LEPALDIRSLVRP---AVFIPEVKRL 87 (129)
T ss_dssp GCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGG-GG----TCTTSCGGGGCBC---CCEEETTCBH
T ss_pred HeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHh-Hh----ccCCcCHHHHhCC---CeEeCCCCcH
Confidence 35678889999999999987765 55554431 1 1 1111111 11 1245679999965 7899999999
Q ss_pred hcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613 105 DEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 146 (250)
Q Consensus 105 ~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~ 146 (250)
.++ ++.|.+++.+.+||+|++|+++|+||..|+++.+
T Consensus 88 ~~~-----~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l 124 (129)
T 3jtf_A 88 NVL-----LREFRASRNHLAIVIDEHGGISGLVTMEDVLEQI 124 (129)
T ss_dssp HHH-----HHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHH
T ss_pred HHH-----HHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence 999 9999999999999999889999999999999763
No 75
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=98.82 E-value=8.2e-09 Score=70.31 Aligned_cols=48 Identities=17% Similarity=0.419 Sum_probs=44.2
Q ss_pred CeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 192 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 192 ~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
++++++++++.+|+++|.+++++.+||+| +|+++||||..||++.+..
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~ 49 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVVA 49 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTT
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHh
Confidence 68999999999999999999999999998 6899999999999876543
No 76
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=98.81 E-value=1.3e-08 Score=78.58 Aligned_cols=63 Identities=19% Similarity=0.343 Sum_probs=57.7
Q ss_pred cCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHHHHHHHhh
Q 025613 179 TNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDAD-GKLVGIITRGNVVRAALQI 241 (250)
Q Consensus 179 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~-g~~vGiIt~~Dil~~l~~~ 241 (250)
....+++++|.+ +++++++++++.+|++.|.++++..+||+|++ |+++|+||.+|+++.+.+.
T Consensus 20 l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~ 85 (148)
T 3lv9_A 20 FEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINE 85 (148)
T ss_dssp GGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHH
T ss_pred cCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcC
Confidence 356889999998 89999999999999999999999999999977 8999999999999987654
No 77
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=98.80 E-value=2.6e-08 Score=74.84 Aligned_cols=102 Identities=20% Similarity=0.196 Sum_probs=76.7
Q ss_pred cceecCCCChhHHHHHhhhcCC-eeeeeCCC-----cc-cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchh
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVSALRRS-----SA-VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD 105 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~ 105 (250)
+.++..+.++.+++..|.+... .++...+. .. ...+..... .......+++++|++ +.++++++++.
T Consensus 15 ~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~---~~~~~~~~v~~~m~~---~~~v~~~~~l~ 88 (127)
T 3nqr_A 15 MITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFM---RSDAEAFSMDKVLRT---AVVVPESKRVD 88 (127)
T ss_dssp CCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGG---STTCCCCCHHHHCBC---CCEEETTCBHH
T ss_pred eEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHH---hccCCCCCHHHHcCC---CeEECCCCcHH
Confidence 5678889999999999877655 55554432 11 111211111 112346689999965 67899999999
Q ss_pred cccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613 106 EAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 145 (250)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~ 145 (250)
++ ++.|.+++.+.+||+|++|+++|+||..|+++.
T Consensus 89 ~a-----~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~ 123 (127)
T 3nqr_A 89 RM-----LKEFRSQRYHMAIVIDEFGGVSGLVTIEDILEL 123 (127)
T ss_dssp HH-----HHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHH
T ss_pred HH-----HHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHH
Confidence 99 999999999999999999999999999999975
No 78
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=98.79 E-value=1.2e-08 Score=85.57 Aligned_cols=62 Identities=19% Similarity=0.340 Sum_probs=57.8
Q ss_pred CCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhh
Q 025613 180 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 241 (250)
Q Consensus 180 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~ 241 (250)
...+++++|.++++++++++++.+|+++|.+++++.+||+|++|+++|+||..|+++++.+.
T Consensus 5 ~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~~ 66 (245)
T 3l2b_A 5 VKLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDI 66 (245)
T ss_dssp CCCBGGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHCC
T ss_pred ccCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHh
Confidence 35789999999999999999999999999999999999999889999999999999998653
No 79
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=98.79 E-value=7.7e-09 Score=76.85 Aligned_cols=58 Identities=34% Similarity=0.665 Sum_probs=54.6
Q ss_pred cccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 183 MVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 183 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
+++++|.++++++++++++.+|++.|.+++.+.+||+|++|+++|+||..|+++.+.+
T Consensus 2 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~ 59 (122)
T 3kpb_A 2 LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQ 59 (122)
T ss_dssp BHHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHT
T ss_pred chHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHh
Confidence 5788999999999999999999999999999999999989999999999999998765
No 80
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=98.79 E-value=2.7e-08 Score=75.86 Aligned_cols=105 Identities=13% Similarity=0.087 Sum_probs=78.0
Q ss_pred ccceecCCCChhHHHHHhhhcCC-eeeeeCCC-----c-ccccccccccCCCCCCCCCceeccccccCCceeEeCCCCch
Q 025613 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRS-----S-AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV 104 (250)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v 104 (250)
.+.++..+.++.+++..|.+... .++...+. . +...+..... ........+++++|++ ++++++++++
T Consensus 14 ~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~--~~~~~~~~~v~~~m~~---~~~v~~~~~l 88 (136)
T 3lfr_A 14 QMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLI--LKADGDSDDVKKLLRP---ATFVPESKRL 88 (136)
T ss_dssp GCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGG--GSSSGGGCCGGGTCBC---CCEEETTCBH
T ss_pred HEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHH--HhccCCCcCHHHHcCC---CeEECCCCcH
Confidence 45678889999999999877655 55554432 1 1111211110 0123345689999965 7899999999
Q ss_pred hcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613 105 DEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 146 (250)
Q Consensus 105 ~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~ 146 (250)
.++ ++.|.+++++.+||+|++|+++|+||..|+++.+
T Consensus 89 ~~~-----~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l 125 (136)
T 3lfr_A 89 NVL-----LREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQI 125 (136)
T ss_dssp HHH-----HHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC
T ss_pred HHH-----HHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence 999 9999999999999999999999999999999753
No 81
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=98.78 E-value=1.1e-08 Score=81.25 Aligned_cols=62 Identities=19% Similarity=0.399 Sum_probs=54.3
Q ss_pred cCCCccccccc--CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHHHHHHHh
Q 025613 179 TNGKMVGDLMT--PAPVVVRETTNLEDAARLLLETKYRRLPVVDAD-GKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 179 ~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~-g~~vGiIt~~Dil~~l~~ 240 (250)
....+++++|. ++++++++++++.+|++.|.++++..+||+|++ |+++|+||.+|+++.+.+
T Consensus 39 l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~ 103 (172)
T 3lhh_A 39 LDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIA 103 (172)
T ss_dssp ----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHT
T ss_pred cCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhh
Confidence 34678999998 678999999999999999999999999999977 899999999999998764
No 82
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=98.77 E-value=1.9e-08 Score=77.78 Aligned_cols=60 Identities=23% Similarity=0.236 Sum_probs=56.3
Q ss_pred CCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 181 GKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 181 ~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
..+++++|.+ +++++.+++++.+|++.|.+++...+||+|++|+++|+||..|+++.+.+
T Consensus 27 ~~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~ 88 (149)
T 3k2v_A 27 LLRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDT 88 (149)
T ss_dssp TSBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCS
T ss_pred ccCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhc
Confidence 4689999998 99999999999999999999999999999988999999999999988754
No 83
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=98.76 E-value=2e-08 Score=78.13 Aligned_cols=108 Identities=21% Similarity=0.254 Sum_probs=79.0
Q ss_pred ccceecCCCChhHHHHHhhhcCC-eeeeeCCCc---cc-ccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhc
Q 025613 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS---AV-FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE 106 (250)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~ 106 (250)
.++++..+.++.+++..|.+... .++...+.- .. ..+...............+++++|.+ ++.++.+++++.+
T Consensus 22 ~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~ 99 (157)
T 4fry_A 22 TIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYARKVVLQERSSKATRVEEIMTA--KVRYVEPSQSTDE 99 (157)
T ss_dssp CCCEEETTSBHHHHHHHHHHHTCSEEEEESSSSEEEEEEHHHHHHHSGGGTCCSSSCBHHHHSBS--SCCCBCTTSBHHH
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHHhccCCccccCHHHHcCC--CCcEECCCCcHHH
Confidence 35678889999999999877665 444333221 11 11110111111222356789999998 8999999999999
Q ss_pred ccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhh
Q 025613 107 AFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 147 (250)
Q Consensus 107 a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~ 147 (250)
+ ++.|.+++++.+||+| +|+++|+|+..||++++.
T Consensus 100 ~-----~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~ 134 (157)
T 4fry_A 100 C-----MALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVI 134 (157)
T ss_dssp H-----HHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred H-----HHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence 9 9999999999999999 799999999999998754
No 84
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=98.76 E-value=1.3e-08 Score=77.03 Aligned_cols=106 Identities=16% Similarity=0.063 Sum_probs=78.0
Q ss_pred ccceecCCCChhHHHHHhhhcCC-eeeeeCCC-----c-ccccccccccCCCCCCCCCceeccccccCCceeEeCCCCch
Q 025613 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRS-----S-AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV 104 (250)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v 104 (250)
.+.++..+.++.++...|.+... .++...+. . +...+...... ........+++++|. +++++++++++
T Consensus 13 ~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~-~~~~~~~~~v~~~m~---~~~~v~~~~~l 88 (130)
T 3hf7_A 13 EIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMT-EKKEFTKEIMLRAAD---EIYFVPEGTPL 88 (130)
T ss_dssp GCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHT-SSSCCCHHHHHHHSB---CCCEEETTCBH
T ss_pred HEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHh-ccCccchhhHHHhcc---CCeEeCCCCcH
Confidence 46678889999999999987765 66655321 1 11111111111 112234457899994 58899999999
Q ss_pred hcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613 105 DEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 146 (250)
Q Consensus 105 ~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~ 146 (250)
.++ ++.|.+++.+.+||+|++|+++|+||..|+++.+
T Consensus 89 ~~~-----~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l 125 (130)
T 3hf7_A 89 STQ-----LVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEI 125 (130)
T ss_dssp HHH-----HHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred HHH-----HHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHH
Confidence 999 9999999999999999999999999999999763
No 85
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=98.74 E-value=2.1e-08 Score=78.61 Aligned_cols=60 Identities=33% Similarity=0.501 Sum_probs=56.0
Q ss_pred CCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 181 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 181 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
..+++++|.++++++.+++++.+|++.|.+.+.+.+||+|++|+++|+||..||++++..
T Consensus 4 ~~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~ 63 (160)
T 2o16_A 4 MIKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQES 63 (160)
T ss_dssp CCBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred cCcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHH
Confidence 467999999999999999999999999999999999999988999999999999998764
No 86
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=98.73 E-value=3.5e-08 Score=83.67 Aligned_cols=63 Identities=27% Similarity=0.342 Sum_probs=57.4
Q ss_pred CCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC--CcEEEEEehHHHHHHHHhhh
Q 025613 180 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD--GKLVGIITRGNVVRAALQIK 242 (250)
Q Consensus 180 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~--g~~vGiIt~~Dil~~l~~~~ 242 (250)
....+.++|+++++++.+++++.+|.++|.+++++.+||||++ |+++|+||+.||++++....
T Consensus 11 ~~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~ 75 (250)
T 2d4z_A 11 YNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRI 75 (250)
T ss_dssp SSCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHH
T ss_pred CCCChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhh
Confidence 4678999999999999999999999999999999999999963 68999999999999877653
No 87
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=98.73 E-value=2.9e-08 Score=75.88 Aligned_cols=60 Identities=20% Similarity=0.350 Sum_probs=55.3
Q ss_pred CCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCC--cEEEEEehHHHHHHHHh
Q 025613 181 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG--KLVGIITRGNVVRAALQ 240 (250)
Q Consensus 181 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g--~~vGiIt~~Dil~~l~~ 240 (250)
..+++++|.++++++++++++.+|++.|.+.+.+.+||+|++| +++|+||..|+++.+.+
T Consensus 4 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~ 65 (141)
T 2rih_A 4 AIRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQ 65 (141)
T ss_dssp -CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHT
T ss_pred ceEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhc
Confidence 4679999999999999999999999999999999999999877 99999999999998754
No 88
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=98.72 E-value=3.1e-08 Score=75.22 Aligned_cols=58 Identities=28% Similarity=0.482 Sum_probs=54.0
Q ss_pred CCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613 180 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237 (250)
Q Consensus 180 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~ 237 (250)
...+++++|.++++++++++++.+|++.|.+++.+.+||+|++|+++|+||..|+++.
T Consensus 5 ~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~ 62 (138)
T 2yzi_A 5 MKAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRR 62 (138)
T ss_dssp TTSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred hhhhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Confidence 3578999999999999999999999999999999999999988999999999999853
No 89
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=98.72 E-value=3e-08 Score=76.20 Aligned_cols=108 Identities=22% Similarity=0.289 Sum_probs=77.3
Q ss_pred cceecCCCChhHHHHHhhhcCC-eeeeeCCCc----ccccccccccC-------------CCCCCCCCceeccccccCCc
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVSALRRSS----AVFASGTLTAN-------------SAAPSSGVYTVGDFMTTKEE 94 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~-------------~~~~~~~~~~v~~~m~~~~~ 94 (250)
++++..+.++.++...|.+... .++...+.. ........... .........+++++|.+ +
T Consensus 17 ~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~--~ 94 (152)
T 4gqw_A 17 LHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLSKTNGKLVGDLMTP--A 94 (152)
T ss_dssp CCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC----CCHHHHHHHTC-----CCBHHHHSEE--S
T ss_pred CeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCcccchHHHHHHHHHhccccHHHhcCC--C
Confidence 6678889999999999877665 444444321 11110000000 00012345689999998 8
Q ss_pred eeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhh
Q 025613 95 LHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 147 (250)
Q Consensus 95 ~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~ 147 (250)
++++++++++.++ ++.|.+++++.+||+|++|+++|+||..||++.+.
T Consensus 95 ~~~v~~~~~l~~a-----~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~ 142 (152)
T 4gqw_A 95 PLVVEEKTNLEDA-----AKILLETKYRRLPVVDSDGKLVGIITRGNVVRAAL 142 (152)
T ss_dssp CCCEESSSBHHHH-----HHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred ceEECCCCcHHHH-----HHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHH
Confidence 8999999999999 99999999999999998999999999999998643
No 90
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=98.71 E-value=4.8e-08 Score=76.39 Aligned_cols=61 Identities=33% Similarity=0.476 Sum_probs=55.7
Q ss_pred ccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613 178 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 239 (250)
Q Consensus 178 ~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~ 239 (250)
.....+++++|.+ ++++.+++++.+|++.|.+.+...+||+|++|+++|+||..||++.+.
T Consensus 13 ~l~~~~v~~im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~ 73 (159)
T 3fv6_A 13 KLKKLQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASI 73 (159)
T ss_dssp HHTTCBGGGSCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHT
T ss_pred HHhhCCHHHHcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhh
Confidence 3456789999987 679999999999999999999999999998899999999999999873
No 91
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=98.70 E-value=4.8e-08 Score=73.69 Aligned_cols=60 Identities=30% Similarity=0.422 Sum_probs=55.4
Q ss_pred CCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhh
Q 025613 181 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 241 (250)
Q Consensus 181 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~ 241 (250)
..+++++|.++++++++++++.+|++.|.+.+.+.+||+| +|+++|+||..|+++.+.+.
T Consensus 3 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~ 62 (133)
T 2ef7_A 3 EEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKG 62 (133)
T ss_dssp CCBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTT
T ss_pred cccHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhcC
Confidence 4679999999999999999999999999999999999999 89999999999999877643
No 92
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=98.70 E-value=3.7e-08 Score=74.74 Aligned_cols=60 Identities=25% Similarity=0.418 Sum_probs=55.2
Q ss_pred CCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHH-HHHHH
Q 025613 180 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNV-VRAAL 239 (250)
Q Consensus 180 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Di-l~~l~ 239 (250)
...+++++|.++++++++++++.+|++.|.+.+.+.+||+|++|+++|+||.+|+ ++.+.
T Consensus 6 ~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~ 66 (138)
T 2p9m_A 6 KNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIR 66 (138)
T ss_dssp TTCBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTT
T ss_pred ccCCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHh
Confidence 3578999999999999999999999999999999999999988999999999999 87654
No 93
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=98.69 E-value=3.2e-08 Score=73.66 Aligned_cols=57 Identities=32% Similarity=0.353 Sum_probs=53.0
Q ss_pred cccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 183 MVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 183 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
+++++|.++++++++++++.+|++.|.+.+.+.+||+| +|+++|+||..|+++.+.+
T Consensus 2 ~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~ 58 (125)
T 1pbj_A 2 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAE 58 (125)
T ss_dssp CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred CHHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhc
Confidence 46789999999999999999999999999999999999 8999999999999987654
No 94
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=98.69 E-value=4e-08 Score=65.97 Aligned_cols=50 Identities=16% Similarity=0.388 Sum_probs=45.6
Q ss_pred CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhh
Q 025613 191 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 241 (250)
Q Consensus 191 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~ 241 (250)
+++++++++++.+|++.|.+++++.+||+|+ |+++|+||.+|+++++...
T Consensus 1 ~~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~-~~l~Givt~~dl~~~~~~~ 50 (70)
T 3fio_A 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEG-DEILGVVTERDILDKVVAK 50 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCSEEEEEET-TEEEEEEEHHHHHHHTTTT
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHHc
Confidence 3678999999999999999999999999996 9999999999999987543
No 95
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=98.68 E-value=2.4e-08 Score=78.37 Aligned_cols=60 Identities=27% Similarity=0.432 Sum_probs=53.8
Q ss_pred CcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhh
Q 025613 182 KMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 241 (250)
Q Consensus 182 ~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~ 241 (250)
..+.++|.+ ++.++.+++++.+|+++|.++++..+||+|++|+++|+||.+|+++++...
T Consensus 15 ~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~ 76 (156)
T 3k6e_A 15 GQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEH 76 (156)
T ss_dssp TTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHH
T ss_pred ccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhc
Confidence 467889974 789999999999999999999999999999889999999999999987654
No 96
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=98.66 E-value=2.9e-08 Score=77.20 Aligned_cols=60 Identities=25% Similarity=0.374 Sum_probs=54.9
Q ss_pred CCccccccc--CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 181 GKMVGDLMT--PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 181 ~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
..+++++|. ++++++++++++.+|++.|.+++.+.+||+|++|+++|+||..||++.+..
T Consensus 14 ~~~v~dim~p~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~ 75 (156)
T 3ctu_A 14 LGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQME 75 (156)
T ss_dssp HTTGGGGEEEGGGCCCEETTSBHHHHHHHHTTCSSSEEEEECC-CBEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHcCcccCceEECCCCCHHHHHHHHHHCCCceEeEECCCCEEEEEEcHHHHHHHHHh
Confidence 467899998 678999999999999999999999999999988999999999999998865
No 97
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=98.65 E-value=3.4e-08 Score=77.07 Aligned_cols=62 Identities=27% Similarity=0.386 Sum_probs=56.7
Q ss_pred cCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 179 TNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 179 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
....++.++|.+ +++++.+++++.+|++.|.+++++.+||+|++|+++|+||..||++.+.+
T Consensus 11 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~ 74 (159)
T 1yav_A 11 LLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFG 74 (159)
T ss_dssp CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBC
T ss_pred HhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhh
Confidence 346789999988 89999999999999999999999999999988999999999999987643
No 98
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=98.65 E-value=2.3e-08 Score=75.45 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=53.4
Q ss_pred CCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHHHHHHHhh
Q 025613 181 GKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDAD-GKLVGIITRGNVVRAALQI 241 (250)
Q Consensus 181 ~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~-g~~vGiIt~~Dil~~l~~~ 241 (250)
..+++++|.+ .++++++++++.+|++.|.+++++.+||+|++ |+++|+||.+|+++++.+.
T Consensus 5 ~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~ 68 (130)
T 3i8n_A 5 DVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSG 68 (130)
T ss_dssp --CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTT
T ss_pred cCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcC
Confidence 5789999985 45689999999999999999999999999977 8999999999999987643
No 99
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=98.65 E-value=1e-07 Score=78.24 Aligned_cols=106 Identities=16% Similarity=0.151 Sum_probs=76.5
Q ss_pred ccceecCCCChhHHHHHhhhc---CC-eeeeeCCCcccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613 32 QLPCLLLSRPGCRVFSVLATS---SD-RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107 (250)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a 107 (250)
.+.++..+.++.+++..+.+. .. .++......-+.+- +............+++++|++ +++++++++++.++
T Consensus 63 ~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGi--vt~~dll~~~~~~~v~~im~~--~~~~v~~~~~l~~a 138 (205)
T 3kxr_A 63 QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGT--VRRYDIFKHEPHEPLISLLSE--DSRALTANTTLLDA 138 (205)
T ss_dssp CCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEE--EEHHHHTTSCTTSBGGGGCCS--SCCCEETTSCHHHH
T ss_pred ceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEE--EEHHHHHhCCCcchHHHHhcC--CCeEECCCCCHHHH
Confidence 467888899999999988763 22 23222221110000 000000112345689999988 89999999999999
Q ss_pred cchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613 108 FVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 146 (250)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~ 146 (250)
++.|.++++..+||+|++|+++|+||..|++..+
T Consensus 139 -----~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i 172 (205)
T 3kxr_A 139 -----AEAIEHSREIELPVIDDAGELIGRVTLRAATALV 172 (205)
T ss_dssp -----HHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred -----HHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHH
Confidence 9999999999999999999999999999999764
No 100
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=98.64 E-value=2.9e-08 Score=76.58 Aligned_cols=60 Identities=30% Similarity=0.416 Sum_probs=55.3
Q ss_pred CCCccccccc--CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613 180 NGKMVGDLMT--PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 239 (250)
Q Consensus 180 ~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~ 239 (250)
...+++++|. .+++++++++++.+|++.|.++++..+||+|++|+++|+||..||++.+.
T Consensus 13 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~ 74 (150)
T 3lqn_A 13 QQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGIL 74 (150)
T ss_dssp HHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTB
T ss_pred hcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHH
Confidence 3578999998 45899999999999999999999999999998999999999999998874
No 101
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=98.64 E-value=4e-08 Score=76.27 Aligned_cols=60 Identities=28% Similarity=0.377 Sum_probs=55.2
Q ss_pred CCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613 180 NGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 239 (250)
Q Consensus 180 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~ 239 (250)
...+++++|.+ +++++.+++++.+|++.|.+++++.+||+|++|+++|+||..|+++.+.
T Consensus 9 ~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~ 70 (157)
T 2emq_A 9 MQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAIL 70 (157)
T ss_dssp -CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSB
T ss_pred hhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHh
Confidence 46789999986 8999999999999999999999999999998899999999999998764
No 102
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=98.63 E-value=4.3e-08 Score=77.69 Aligned_cols=108 Identities=21% Similarity=0.262 Sum_probs=78.1
Q ss_pred ccceecCCCChhHHHHHhhhcCC-eeeeeCCCcc----c-cccccccc-CCCC-------------------------CC
Q 025613 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSSA----V-FASGTLTA-NSAA-------------------------PS 79 (250)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~----~-~~~~~~~~-~~~~-------------------------~~ 79 (250)
.++++..+.++.+++..|.+... .++...+..- . ..+..... .... ..
T Consensus 15 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (180)
T 3sl7_A 15 NLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNELQKLISK 94 (180)
T ss_dssp GCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-------------------CCCSHHHHHHHHHT
T ss_pred CceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccccccchhhhhHHHHHHHhc
Confidence 36678889999999999877654 4554442211 1 11110000 0000 02
Q ss_pred CCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613 80 SGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 146 (250)
Q Consensus 80 ~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~ 146 (250)
....+++++|++ +++++++++++.++ ++.|.+++++.+||+|++|+++|+||..||++.+
T Consensus 95 ~~~~~v~~~m~~--~~~~v~~~~~l~~a-----~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~ 154 (180)
T 3sl7_A 95 TYGKVVGDLMTP--SPLVVRDSTNLEDA-----ARLLLETKFRRLPVVDADGKLIGILTRGNVVRAA 154 (180)
T ss_dssp TTTCBHHHHSEE--SCCCEETTSBHHHH-----HHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred cccccHHHHhCC--CceEeCCCCcHHHH-----HHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHH
Confidence 245689999998 88999999999999 9999999999999999999999999999999864
No 103
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=98.63 E-value=4e-08 Score=77.30 Aligned_cols=64 Identities=30% Similarity=0.382 Sum_probs=58.3
Q ss_pred ccCCCcccccccC---CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhh
Q 025613 178 KTNGKMVGDLMTP---APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 241 (250)
Q Consensus 178 ~~~~~~v~~im~~---~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~ 241 (250)
.....+++++|.+ +++++.+++++.+|++.|.+.+...+||+|++|+++|+||..||++++.+.
T Consensus 20 ~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~ 86 (165)
T 3fhm_A 20 QGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQ 86 (165)
T ss_dssp SSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred hhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhc
Confidence 3456889999985 699999999999999999999999999999889999999999999987764
No 104
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=98.63 E-value=8e-08 Score=74.97 Aligned_cols=100 Identities=14% Similarity=0.086 Sum_probs=75.1
Q ss_pred ccceecCCCChhHHHHHhhhcCC-eeeeeCCCc------ccccccccccCCCCCCCCCceeccccccCCceeEeCCCCch
Q 025613 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS------AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV 104 (250)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v 104 (250)
.+.++..+.++.++...|.+... .++...+.. +...+... .. ... ...+++++|++ ++++++++++
T Consensus 49 ~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~-~~--~~~-~~~~v~~im~~---~~~v~~~~~l 121 (156)
T 3oi8_A 49 RMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLK-YM--FNP-EQFHLKSILRP---AVFVPEGKSL 121 (156)
T ss_dssp GCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGG-GS--SCG-GGCCHHHHCBC---CCEEETTSBH
T ss_pred HeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHH-HH--HcC-CcccHHHHcCC---CEEECCCCCH
Confidence 46678889999999999987655 555544321 11112111 10 011 45689999965 7899999999
Q ss_pred hcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHH
Q 025613 105 DEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143 (250)
Q Consensus 105 ~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~ 143 (250)
.++ ++.|.+++.+.+||+|++|+++|+||..|++
T Consensus 122 ~~a-----~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil 155 (156)
T 3oi8_A 122 TAL-----LKEFREQRNHMAIVIDEYGGTSGLVTFEDII 155 (156)
T ss_dssp HHH-----HHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred HHH-----HHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence 999 9999999999999999999999999999986
No 105
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=98.63 E-value=6e-08 Score=75.64 Aligned_cols=61 Identities=25% Similarity=0.397 Sum_probs=56.1
Q ss_pred CCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcC--CCcEEEEEehHHHHHHHHh
Q 025613 180 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA--DGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 180 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~--~g~~vGiIt~~Dil~~l~~ 240 (250)
...+++++|.++++++++++++.+|++.|.+++.+.+||+|+ +|+++|+||..|+++.+..
T Consensus 11 ~~~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~ 73 (164)
T 2pfi_A 11 HHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQA 73 (164)
T ss_dssp CSCBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC
T ss_pred cCCCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHh
Confidence 467899999999999999999999999999999999999996 6899999999999987743
No 106
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=98.62 E-value=9.3e-08 Score=72.80 Aligned_cols=60 Identities=18% Similarity=0.301 Sum_probs=54.5
Q ss_pred CCcccc---cccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613 181 GKMVGD---LMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 181 ~~~v~~---im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~ 240 (250)
..++++ +|.++++++++++++.+|++.|.+.+.+.+||+|++|+++|+||..|+++.+.+
T Consensus 7 ~~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~ 69 (144)
T 2nyc_A 7 KIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKG 69 (144)
T ss_dssp GSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHT
T ss_pred hcchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcc
Confidence 456677 888889999999999999999999999999999988999999999999987654
No 107
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=98.61 E-value=8.3e-08 Score=72.61 Aligned_cols=107 Identities=17% Similarity=0.186 Sum_probs=77.5
Q ss_pred ccceecCCCChhHHHHHhhhcCC-eeeee-CCCc--cc-ccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhc
Q 025613 32 QLPCLLLSRPGCRVFSVLATSSD-RVSAL-RRSS--AV-FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE 106 (250)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~-~~~~--~~-~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~ 106 (250)
.++++..+.++.++...+.+... .++.. .+.+ .. ..+...............+++++|.+ ++.++++++++.+
T Consensus 18 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~ 95 (135)
T 2rc3_A 18 TVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTR--QVAYVDLNNTNED 95 (135)
T ss_dssp CCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBC--SCCCBCTTCBHHH
T ss_pred CcEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEehHHHHHHHHHcCCCcccCCHHHhccC--CCeEECCCCcHHH
Confidence 46678889999999998876654 34333 2221 11 11111001101123456789999998 8999999999999
Q ss_pred ccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613 107 AFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 146 (250)
Q Consensus 107 a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~ 146 (250)
+ ++.|.+++++.+||+| +|+++|+||..|+++++
T Consensus 96 ~-----~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~ 129 (135)
T 2rc3_A 96 C-----MALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDA 129 (135)
T ss_dssp H-----HHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred H-----HHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHH
Confidence 9 9999999999999999 79999999999999764
No 108
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=98.59 E-value=1.7e-07 Score=74.67 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=56.0
Q ss_pred cCCCccccccc--CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHHHHHHHh
Q 025613 179 TNGKMVGDLMT--PAPVVVRETTNLEDAARLLLETKYRRLPVVDAD-GKLVGIITRGNVVRAALQ 240 (250)
Q Consensus 179 ~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~-g~~vGiIt~~Dil~~l~~ 240 (250)
....+++++|+ ++++++++++++.+|++.|.++++..+||++++ |+++|+||.+||+.++.+
T Consensus 33 l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~ 97 (173)
T 3ocm_A 33 LAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLIT 97 (173)
T ss_dssp HTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHH
T ss_pred cCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhc
Confidence 45788999996 468899999999999999999999999999976 899999999999998754
No 109
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=98.59 E-value=1.1e-07 Score=76.17 Aligned_cols=59 Identities=22% Similarity=0.297 Sum_probs=55.4
Q ss_pred CCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613 181 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 239 (250)
Q Consensus 181 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~ 239 (250)
..+++++|.++++++.+++++.+|+++|.+++.+.+||+|++|+++|+||.+||++.+.
T Consensus 8 ~~~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~ 66 (184)
T 1pvm_A 8 FMRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFI 66 (184)
T ss_dssp CCBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTG
T ss_pred ccCHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Confidence 47899999999999999999999999999999999999998899999999999998765
No 110
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=98.58 E-value=1.4e-07 Score=73.02 Aligned_cols=109 Identities=13% Similarity=0.094 Sum_probs=77.0
Q ss_pred cccceecCCCChhHHHHHhhhcCC-eeeeeCCC--c--cc-ccccccccCCCCCCCCCceeccccc------cCCceeEe
Q 025613 31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRRS--S--AV-FASGTLTANSAAPSSGVYTVGDFMT------TKEELHVV 98 (250)
Q Consensus 31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~--~--~~-~~~~~~~~~~~~~~~~~~~v~~~m~------~~~~~~~v 98 (250)
..++++..+.++.+++..|.+... .++...+. . .. ..+...............+++++|. . +++++
T Consensus 29 ~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~vGivt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~~~--~~~~v 106 (152)
T 2uv4_A 29 ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFE--GVLKC 106 (152)
T ss_dssp SSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEHHHHHHHHHCSSCCCTTSBGGGGGGTCCHHHH--TCSEE
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCceEeEECCCCcEEEEEeHHHHHHHhcchhhhhhcchHHHHHhhhhcccC--CCeEE
Confidence 346678889999999999876654 44444321 1 11 1111000000001123457899996 5 78999
Q ss_pred CCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613 99 KPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 146 (250)
Q Consensus 99 ~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~ 146 (250)
.+++++.++ ++.|.+++++.+||+|++|+++|+||..||++++
T Consensus 107 ~~~~~l~~a-----~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~l 149 (152)
T 2uv4_A 107 YLHETLETI-----INRLVEAEVHRLVVVDENDVVKGIVSLSDILQAL 149 (152)
T ss_dssp CTTSBHHHH-----HHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred CCCCcHHHH-----HHHHHHcCCeEEEEECCCCeEEEEEEHHHHHHHH
Confidence 999999999 9999999999999999889999999999999753
No 111
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=98.58 E-value=7.8e-07 Score=82.76 Aligned_cols=103 Identities=19% Similarity=0.158 Sum_probs=79.5
Q ss_pred ccceecCCCChhHHHHHhhhcCC-eeeeeCC--Cc-----ccccccccccCCCCCCCCCceeccccccCCceeEeCCCCc
Q 025613 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRR--SS-----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTT 103 (250)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~ 103 (250)
.+.++..+.++.++...+.++.. .++...+ .. +...+. . .......+++++|++ .++++++++++
T Consensus 122 d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl----~--~~~~~~~~V~~vM~~-~~~vtv~~~~~ 194 (511)
T 3usb_A 122 DPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDM----R--FIQDYSIKISDVMTK-EQLITAPVGTT 194 (511)
T ss_dssp SCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHH----T--TCCCSSSBHHHHCCC-CCCCCEETTCC
T ss_pred CCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHh----h--hhccCCCcHHHhccc-CCCEEECCCCC
Confidence 45678889999999999988776 5665553 11 111111 0 112345689999985 36899999999
Q ss_pred hhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613 104 VDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 146 (250)
Q Consensus 104 v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~ 146 (250)
+.++ ++.|.++++..+||+|++|+++|+||.+|+++..
T Consensus 195 l~ea-----l~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~ 232 (511)
T 3usb_A 195 LSEA-----EKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVI 232 (511)
T ss_dssp HHHH-----HHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred HHHH-----HHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhh
Confidence 9999 9999999999999999999999999999999763
No 112
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=98.57 E-value=9.6e-08 Score=71.99 Aligned_cols=106 Identities=15% Similarity=0.246 Sum_probs=76.6
Q ss_pred ccceecCCCChhHHHHHhhhcCC-eeeeeC--CCc--ccc-cccccccCCCCCCCCCceeccccccCCceeEeCCCCchh
Q 025613 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALR--RSS--AVF-ASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD 105 (250)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~--~~~-~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~ 105 (250)
.++++..+.++.++...+.+... .++... +.. ... .+...............+++++|.+ +++++++++++.
T Consensus 17 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~ 94 (133)
T 1y5h_A 17 GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARD--SIYYVDANASIQ 94 (133)
T ss_dssp TCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTT--CCCCEETTCCHH
T ss_pred CceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCCCccccCHHHHhcC--CCEEECCCCCHH
Confidence 35677888999999998876554 444442 211 111 1110001101122345789999988 899999999999
Q ss_pred cccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613 106 EAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 145 (250)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~ 145 (250)
++ ++.|.+++.+.+||+|+ |+++|+||..|+++.
T Consensus 95 ~~-----~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~ 128 (133)
T 1y5h_A 95 EM-----LNVMEEHQVRRVPVISE-HRLVGIVTEADIARH 128 (133)
T ss_dssp HH-----HHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHT
T ss_pred HH-----HHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHH
Confidence 99 99999999999999997 899999999999975
No 113
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=98.55 E-value=6.5e-08 Score=75.14 Aligned_cols=62 Identities=34% Similarity=0.475 Sum_probs=55.6
Q ss_pred CCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEE-cC-CCcEEEEEehHHHHHHHHhh
Q 025613 180 NGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVV-DA-DGKLVGIITRGNVVRAALQI 241 (250)
Q Consensus 180 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVV-d~-~g~~vGiIt~~Dil~~l~~~ 241 (250)
...+++++|.+ +++++++++++.+|++.|.+++++.+||+ ++ +|+++|+||.+|+++.+...
T Consensus 18 ~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~ 83 (153)
T 3oco_A 18 NDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARID 83 (153)
T ss_dssp HHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHH
T ss_pred CCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcC
Confidence 35789999986 89999999999999999999999999999 64 48999999999999987654
No 114
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=98.53 E-value=1.8e-07 Score=72.79 Aligned_cols=60 Identities=30% Similarity=0.389 Sum_probs=55.1
Q ss_pred cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCE-EEEEcCCCcEEEEEehHHHHHHHH
Q 025613 179 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRR-LPVVDADGKLVGIITRGNVVRAAL 239 (250)
Q Consensus 179 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~-lpVVd~~g~~vGiIt~~Dil~~l~ 239 (250)
....+++++|.++++++++++++.+|++.|.+.+.+. +||+|++ +++|+||..||++++.
T Consensus 13 ~~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~~ 73 (157)
T 1o50_A 13 MKVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSG 73 (157)
T ss_dssp CBHHHHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHH
T ss_pred hccccHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHHh
Confidence 3456799999999999999999999999999999999 9999976 9999999999998765
No 115
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=98.51 E-value=1.7e-07 Score=74.60 Aligned_cols=62 Identities=26% Similarity=0.502 Sum_probs=56.3
Q ss_pred CCCcccccccCC----CeEe--cCCCCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEehHHHHHHHHhh
Q 025613 180 NGKMVGDLMTPA----PVVV--RETTNLEDAARLLLETKYRRLPVV--DADGKLVGIITRGNVVRAALQI 241 (250)
Q Consensus 180 ~~~~v~~im~~~----~~~v--~~~~~l~~a~~~m~~~~~~~lpVV--d~~g~~vGiIt~~Dil~~l~~~ 241 (250)
...+++++|.+. ++++ .+++++.+|++.|.+.+.+.+||+ |++|+++|+||..|+++.+...
T Consensus 9 ~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~ 78 (185)
T 2j9l_A 9 HKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENA 78 (185)
T ss_dssp CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHH
T ss_pred ccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhh
Confidence 467899999887 7888 999999999999999999999999 7789999999999999987653
No 116
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=98.48 E-value=3.9e-08 Score=91.39 Aligned_cols=104 Identities=20% Similarity=0.198 Sum_probs=0.0
Q ss_pred ccceecCCCChhHHHHHhhhcCC-eeeeeCCC--------cccccccccccCCCCCCCCCceeccccccCCceeEeCCCC
Q 025613 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRS--------SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTT 102 (250)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~ 102 (250)
.+.++..+.++.++...|.++.. .++...+. .+...+... .......+++++|++..+++++++++
T Consensus 106 ~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~-----~~~~~~~~V~diM~~~~~~~tv~~~~ 180 (503)
T 1me8_A 106 SDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPI-----DLTQTETKVSDMMTPFSKLVTAHQDT 180 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHh-----hhccccCcHHHHhCCCCCCEEEcCCC
Confidence 45566677778887777766554 33333221 011111100 01224567999999832399999999
Q ss_pred chhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613 103 TVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 145 (250)
Q Consensus 103 ~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~ 145 (250)
++.++ ++.|.++++..+||+|++|+++|+||.+||++.
T Consensus 181 sl~ea-----~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~ 218 (503)
T 1me8_A 181 KLSEA-----NKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRS 218 (503)
T ss_dssp -------------------------------------------
T ss_pred cHHHH-----HHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHh
Confidence 99999 999999999999999999999999999999975
No 117
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=98.44 E-value=4.5e-07 Score=78.13 Aligned_cols=106 Identities=12% Similarity=0.190 Sum_probs=77.5
Q ss_pred ccceecCCCChhHHHHHhhhcC-----C-eeeeeCCCcccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchh
Q 025613 32 QLPCLLLSRPGCRVFSVLATSS-----D-RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD 105 (250)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~ 105 (250)
.+.++..+.+..++...+.++. . .++...+..-..+- +............+++++|.+ +++++++++++.
T Consensus 146 ~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGi--vt~~dll~~~~~~~v~~im~~--~~~~v~~~~~l~ 221 (286)
T 2oux_A 146 EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGV--ISLRDLIVNDDDTLIADILNE--RVISVHVGDDQE 221 (286)
T ss_dssp CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEE--EEHHHHTTSCTTSBHHHHSBS--CCCCEETTSBHH
T ss_pred CceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEE--EEHHHHHcCCCCCcHHHHcCC--CCeeecCCCCHH
Confidence 4677888999999999988762 1 33433321111110 000000112345689999988 899999999999
Q ss_pred cccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613 106 EAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 146 (250)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~ 146 (250)
++ ++.|.+++...+||+|++|+++|+||..|++..+
T Consensus 222 ea-----~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i 257 (286)
T 2oux_A 222 DV-----AQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVI 257 (286)
T ss_dssp HH-----HHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred HH-----HHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHH
Confidence 99 9999999999999999999999999999999763
No 118
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=98.41 E-value=4.7e-07 Score=77.50 Aligned_cols=106 Identities=17% Similarity=0.237 Sum_probs=76.6
Q ss_pred ccceecCCCChhHHHHHhhhcC------CeeeeeCCCcccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchh
Q 025613 32 QLPCLLLSRPGCRVFSVLATSS------DRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD 105 (250)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~ 105 (250)
.+.++..+.+..++...+.++. ..++...+..-..+- +............+++++|.+ +++++++++++.
T Consensus 144 ~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGi--vt~~dll~~~~~~~v~~im~~--~~~~v~~~~~l~ 219 (278)
T 2yvy_A 144 EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGV--LSLRDLIVADPRTRVAEIMNP--KVVYVRTDTDQE 219 (278)
T ss_dssp CCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEE--EEHHHHHHSCTTCBSTTTSBS--SCCCEETTSBHH
T ss_pred CceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEE--EEHHHHhcCCCCCcHHHHhCC--CCeEEeCCCCHH
Confidence 4667888999999999887752 233333321111100 000000001245689999987 799999999999
Q ss_pred cccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613 106 EAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 146 (250)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~ 146 (250)
++ ++.|.+++...+||+|++|+++|+||..|++..+
T Consensus 220 ~a-----~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i 255 (278)
T 2yvy_A 220 EV-----ARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVL 255 (278)
T ss_dssp HH-----HHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC
T ss_pred HH-----HHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHH
Confidence 99 9999999999999999999999999999999763
No 119
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=98.37 E-value=5.7e-07 Score=83.96 Aligned_cols=61 Identities=25% Similarity=0.550 Sum_probs=57.1
Q ss_pred CCcccccccCCCeEecCC-CCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEehHHHHHHHHhh
Q 025613 181 GKMVGDLMTPAPVVVRET-TNLEDAARLLLETKYRRLPVVD-ADGKLVGIITRGNVVRAALQI 241 (250)
Q Consensus 181 ~~~v~~im~~~~~~v~~~-~~l~~a~~~m~~~~~~~lpVVd-~~g~~vGiIt~~Dil~~l~~~ 241 (250)
..++.++|.++++++.++ +++.+|+++|.+++++.+||+| ++|+++|+||.+||++.+...
T Consensus 383 ~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~ 445 (527)
T 3pc3_A 383 SLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSM 445 (527)
T ss_dssp TSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHH
T ss_pred CCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhc
Confidence 578999999999999999 9999999999999999999999 789999999999999988753
No 120
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=98.16 E-value=2.5e-06 Score=78.66 Aligned_cols=106 Identities=17% Similarity=0.237 Sum_probs=77.0
Q ss_pred ccceecCCCChhHHHHHhhhcC------CeeeeeCCCcccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchh
Q 025613 32 QLPCLLLSRPGCRVFSVLATSS------DRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD 105 (250)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~ 105 (250)
.+.++..+.+..++...+.++. ..++...+..-..+- +............+++++|++ +++++++++++.
T Consensus 164 ~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGi--Vt~~Dll~~~~~~~v~dim~~--~~~~v~~~~~l~ 239 (473)
T 2zy9_A 164 EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGV--LSLRDLIVADPRTRVAEIMNP--KVVYVRTDTDQE 239 (473)
T ss_dssp CEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEE--EEHHHHHHSCTTSBGGGTSBS--SCCCEESSSBHH
T ss_pred CceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEE--EEHHHHhcCCCCCcHHHHhCC--CCeEEeCCCcHH
Confidence 5677888999999999988752 233333321110000 000000001245689999987 899999999999
Q ss_pred cccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613 106 EAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 146 (250)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~ 146 (250)
++ ++.|.+++...+||+|++|+++|+||.+|+++..
T Consensus 240 ea-----~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i 275 (473)
T 2zy9_A 240 EV-----ARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVL 275 (473)
T ss_dssp HH-----HHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred HH-----HHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHH
Confidence 99 9999999999999999999999999999999763
No 121
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=98.09 E-value=4.5e-06 Score=79.61 Aligned_cols=54 Identities=20% Similarity=0.050 Sum_probs=49.2
Q ss_pred eeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613 84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 145 (250)
Q Consensus 84 ~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~ 145 (250)
+++++|++ ++.++++++++.++ ++.|.+++++.+||+ ++|+++|+||.+|+++.
T Consensus 569 ~v~~iMt~--~pitV~~~~~l~ea-----~~~M~~~~i~~lpVv-e~G~lvGIVT~~Dll~~ 622 (632)
T 3org_A 569 SLVVPCDV--SPIVVTSYSLVRQL-----HFLFVMLMPSMIYVT-ERGKLVGIVEREDVAYG 622 (632)
T ss_dssp --CCSCCC--CCCEEETTCBHHHH-----HHHHHHTCCSEEEEE-ETTEEEEEEEGGGTEEC
T ss_pred ccchhhcC--CCceecCCCcHHHH-----HHHHHhcCCCEEEEE-ECCEEEEEEehhhHHHH
Confidence 37889999 89999999999999 999999999999999 68999999999999865
No 122
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=98.04 E-value=1.1e-05 Score=74.79 Aligned_cols=104 Identities=17% Similarity=0.166 Sum_probs=68.3
Q ss_pred cccceecCCCChhHHHHHhhhcCC-eeeeeCCCcc-----cccccccccCCCCCCCCCceeccccccCCceeEeCCCCch
Q 025613 31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRRSSA-----VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV 104 (250)
Q Consensus 31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v 104 (250)
..+.++..+.++.++...|.++.. .++...+..- ...+. . .......+++++|+++++++++++++++
T Consensus 97 ~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL----~--~~~~~~~~v~diM~p~~~~vtv~~~~~l 170 (496)
T 4fxs_A 97 THPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDV----R--FVTDLTKSVAAVMTPKERLATVKEGATG 170 (496)
T ss_dssp BCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHH----T--TCCCTTSBGGGTSEEGGGCCEEECC---
T ss_pred cCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHH----h--hcccCCCcHHHHhcCCCCCEEECCCCCH
Confidence 445678889999999999988776 5555543211 11111 0 1122456899999943348999999999
Q ss_pred hcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613 105 DEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 145 (250)
Q Consensus 105 ~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~ 145 (250)
.++ +++|.++++..+||+|++|+++|+||.+|+++.
T Consensus 171 ~ea-----~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~ 206 (496)
T 4fxs_A 171 AEV-----QEKMHKARVEKILVVNDEFQLKGMITAKDFHKA 206 (496)
T ss_dssp -CG-----GGTCC---CCCEEEECTTSBCCEEECCC-----
T ss_pred HHH-----HHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHh
Confidence 999 999999999999999999999999999999975
No 123
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=98.04 E-value=2e-06 Score=79.54 Aligned_cols=58 Identities=41% Similarity=0.591 Sum_probs=0.0
Q ss_pred CCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613 81 GVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 145 (250)
Q Consensus 81 ~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~ 145 (250)
...+++++|++ +++++++++++.++ ++.|.++++..+||+|++|+++|+||.+||++.
T Consensus 148 ~~~~v~~im~~--~~~~v~~~~~l~ea-----l~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~ 205 (486)
T 2cu0_A 148 EGKLVKELMTK--EVITVPESIEVEEA-----LKIMIENRIDRLPVVDERGKLVGLITMSDLVAR 205 (486)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCCCHHHHccC--CCeEECCcCcHHHH-----HHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHh
Confidence 34578899997 78999999999999 999999999999999999999999999999975
No 124
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=98.00 E-value=1.1e-05 Score=74.58 Aligned_cols=102 Identities=20% Similarity=0.168 Sum_probs=0.0
Q ss_pred cceecCCCChhHHHHHhhhcCC-eeeeeCCC----cccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVSALRRS----SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a 107 (250)
+.++..+.++.++...+.++.. .++...+. .+...+.. .......+++++|+++.+++++++++++.++
T Consensus 98 ~v~v~~~~tv~ea~~~m~~~~~s~~pVvd~g~lvGIVt~rDl~------~~~~~~~~V~~vMtp~~~~vtv~~~~~l~ea 171 (490)
T 4avf_A 98 PVTVTPSTKIIELLQMAREYGFSGFPVVEQGELVGIVTGRDLR------VKPNAGDTVAAIMTPKDKLVTAREGTPLEEM 171 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEeCCCCcHHHHHHHHHHhCCCEEEEEECCEEEEEEEhHHhh------hccccCCcHHHHhccCCCCEEECCCCcHHHH
Confidence 4456667777777777766554 33332211 01111110 0122356799999943348999999999999
Q ss_pred cchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613 108 FVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 145 (250)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~ 145 (250)
+++|.++++..+||+|++|+++|+||..|+++.
T Consensus 172 -----~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~ 204 (490)
T 4avf_A 172 -----KAKLYENRIEKMLVVDENFYLRGLVTFRDIEKA 204 (490)
T ss_dssp --------------------------------------
T ss_pred -----HHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhh
Confidence 999999999999999999999999999999975
No 125
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=97.90 E-value=1.6e-06 Score=80.05 Aligned_cols=58 Identities=29% Similarity=0.385 Sum_probs=0.0
Q ss_pred CCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613 81 GVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 145 (250)
Q Consensus 81 ~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~ 145 (250)
...+++++|++ ++++++++.++++| .++|.++++..+||||++|+++|+||.+|+.+.
T Consensus 198 ~~~~V~evMT~--~lvt~~~~~~leeA-----~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~ 255 (556)
T 4af0_A 198 AETPIKSVMTT--EVVTGSSPITLEKA-----NSLLRETKKGKLPIVDSNGHLVSLVARSDLLKN 255 (556)
T ss_dssp -----------------------------------------------------------------
T ss_pred cceEhhhhccc--ceEEecCCCCHHHH-----HHHHHHccccceeEEccCCcEEEEEEechhhhh
Confidence 34589999998 89999999999999 999999999999999999999999999999864
No 126
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=97.87 E-value=2.1e-05 Score=72.79 Aligned_cols=104 Identities=21% Similarity=0.277 Sum_probs=3.9
Q ss_pred ccceecCCCChhHHHHHhhhcCC-eeeeeCCC-----cccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchh
Q 025613 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRS-----SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD 105 (250)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~ 105 (250)
.++++..+.++.++...|.++.. .++...+. .+...+... ......+++++|++..+++++++++++.
T Consensus 104 ~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~------~~~~~~~v~~im~~~~~~~~v~~~~~l~ 177 (494)
T 1vrd_A 104 DPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRF------EKNLSKKIKDLMTPREKLIVAPPDISLE 177 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHh------hcCCCCcHHHHhCCCCCCeEECCCCCHH
Confidence 34556667777777776665543 22222211 001111000 0113457899998644688999999999
Q ss_pred cccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613 106 EAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 146 (250)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~ 146 (250)
++ ++.|.++++..+||+|++|+++|+|+..|+++..
T Consensus 178 ea-----~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~ 213 (494)
T 1vrd_A 178 KA-----KEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVI 213 (494)
T ss_dssp ------------------------------------CHHHH
T ss_pred HH-----HHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhh
Confidence 99 9999999999999999999999999999999864
No 127
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=97.77 E-value=2.1e-05 Score=73.12 Aligned_cols=105 Identities=20% Similarity=0.162 Sum_probs=48.5
Q ss_pred cceecCCCChhHHHHHhhhcCC-eeeeeCC-----C--cc-cccccccccCCCCCCCCCceeccccccCCceeEeCCCCc
Q 025613 33 LPCLLLSRPGCRVFSVLATSSD-RVSALRR-----S--SA-VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTT 103 (250)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~-----~--~~-~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~ 103 (250)
+..+..+.++.++...|.++.. .++...+ . .. ...+... ........+++++|++..+++++.++++
T Consensus 118 ~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~----~~~~~~~~~v~~vm~~~~~~~tv~~~~~ 193 (514)
T 1jcn_A 118 PVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDF----LAEKDHTTLLSEVMTPRIELVVAPAGVT 193 (514)
T ss_dssp CCCCCC-----------------CEESCC--------CCEECTTTTC--------------------CCBCCCCEETTCC
T ss_pred CEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHh----hhhccCCCCHHHHhCCCCCCeEECCCCC
Confidence 4456667777777777765544 3333221 0 01 1111000 0001245678999986446889999999
Q ss_pred hhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613 104 VDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 146 (250)
Q Consensus 104 v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~ 146 (250)
+.++ ++.|.++++..+||+|++|+++|+||..|+++..
T Consensus 194 l~ea-----~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~ 231 (514)
T 1jcn_A 194 LKEA-----NEILQRSKKGKLPIVNDCDELVAIIARTDLKKNR 231 (514)
T ss_dssp STTT-----TTHHHHHTCSCCCEESSSSCCC----CCCCSSCC
T ss_pred HHHH-----HHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHh
Confidence 9999 9999999999999999999999999999999753
No 128
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=97.57 E-value=0.00011 Score=67.81 Aligned_cols=53 Identities=25% Similarity=0.399 Sum_probs=49.8
Q ss_pred ccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEc--CCCcEEEEEehHHHHH
Q 025613 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD--ADGKLVGIITRGNVVR 236 (250)
Q Consensus 184 v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd--~~g~~vGiIt~~Dil~ 236 (250)
+.++|.++++++++++++.++++.|.+.++..+||+| ++++++|+||.+|++.
T Consensus 92 ~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~ 146 (491)
T 1zfj_A 92 SENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRF 146 (491)
T ss_dssp HTTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHH
T ss_pred HHhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhh
Confidence 4679999999999999999999999999999999999 7899999999999985
No 129
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=59.38 E-value=21 Score=24.00 Aligned_cols=22 Identities=18% Similarity=0.514 Sum_probs=11.0
Q ss_pred EEEEcCCCcEEEEEehHHHHHH
Q 025613 216 LPVVDADGKLVGIITRGNVVRA 237 (250)
Q Consensus 216 lpVVd~~g~~vGiIt~~Dil~~ 237 (250)
+=|++++|.-+|+++..+-++.
T Consensus 16 Vrli~~~Ge~lGv~~~~eAl~~ 37 (78)
T 1tif_A 16 VRLIDQNGDQLGIKSKQEALEI 37 (78)
T ss_dssp EEEECTTSCEEEEEEHHHHHHH
T ss_pred EEEECCCCcCCCcccHHHHHHH
Confidence 3444555555555555554444
No 130
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=49.92 E-value=26 Score=25.38 Aligned_cols=41 Identities=12% Similarity=0.265 Sum_probs=30.0
Q ss_pred HHHHHcCCCEEEEEcCCCcEEEE-EehHHHHHHHHhhhhhhh
Q 025613 206 RLLLETKYRRLPVVDADGKLVGI-ITRGNVVRAALQIKHATE 246 (250)
Q Consensus 206 ~~m~~~~~~~lpVVd~~g~~vGi-It~~Dil~~l~~~~~~~~ 246 (250)
+.+.-.++..+.++|.+|++++. ++..++.+.+.++.....
T Consensus 103 ~~~~v~~~P~~~lid~~G~i~~~~~~~~~l~~~l~~l~~~~~ 144 (152)
T 2lrn_A 103 ESYCIVGFPHIILVDPEGKIVAKELRGDDLYNTVEKFVNGAK 144 (152)
T ss_dssp HHTTCCSSCEEEEECTTSEEEEECCCTTHHHHHHHHHHTSSS
T ss_pred HHhCCCcCCeEEEECCCCeEEEeeCCHHHHHHHHHHHHhhcc
Confidence 33333455677889999999887 788888888888776543
No 131
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=35.40 E-value=1.2e+02 Score=21.64 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=25.3
Q ss_pred cCCCEEEEEcCCCcEEE----EEehHHHHHHHHhhhhhh
Q 025613 211 TKYRRLPVVDADGKLVG----IITRGNVVRAALQIKHAT 245 (250)
Q Consensus 211 ~~~~~lpVVd~~g~~vG----iIt~~Dil~~l~~~~~~~ 245 (250)
.++..+.++|.+|+++. ..+..++.+.+.++..+.
T Consensus 115 ~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~ 153 (165)
T 3or5_A 115 TGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMALGAK 153 (165)
T ss_dssp CSSSEEEEECTTSBEEEEECSCCCHHHHHHHHHHHHC--
T ss_pred CCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHhhh
Confidence 45667789998998764 467888888888877654
No 132
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=35.32 E-value=18 Score=26.60 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=20.8
Q ss_pred EEEEEcCCCcEEEEEehHHHHHHHHhhh
Q 025613 215 RLPVVDADGKLVGIITRGNVVRAALQIK 242 (250)
Q Consensus 215 ~lpVVd~~g~~vGiIt~~Dil~~l~~~~ 242 (250)
..||.+++|+++|+|+..--+..+.+.+
T Consensus 110 ~~PV~~~~g~viGvv~vg~~~~~~~~~~ 137 (142)
T 3by8_A 110 FTPIYDENHKQIGVVAIGLELSRVTQQI 137 (142)
T ss_dssp EEEEECTTSCEEEEEEEEEEHHHHHHHH
T ss_pred EEeEEcCCCCEEEEEEEeEEHHHHHHHH
Confidence 3689887899999998776666555544
No 133
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=34.36 E-value=99 Score=22.32 Aligned_cols=32 Identities=9% Similarity=0.276 Sum_probs=23.0
Q ss_pred cCCCEEEEEcCCCcEE--EEE-ehHHHHHHHHhhh
Q 025613 211 TKYRRLPVVDADGKLV--GII-TRGNVVRAALQIK 242 (250)
Q Consensus 211 ~~~~~lpVVd~~g~~v--GiI-t~~Dil~~l~~~~ 242 (250)
.++..+.|+|.+|+++ |.. +..++.+.+.++.
T Consensus 129 ~~~P~~~lid~~G~i~~~g~~~~~~~l~~~l~~l~ 163 (165)
T 3ha9_A 129 RSIDYIVIMDKSSNVLYAGTTPSLGELESVIKSVQ 163 (165)
T ss_dssp CSSSEEEEEETTCCEEEEEESCCHHHHHHHHHHC-
T ss_pred CCceEEEEEcCCCcEEEeCCCCCHHHHHHHHHHHh
Confidence 4556788999888876 666 7778877776654
No 134
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=33.59 E-value=63 Score=21.58 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.3
Q ss_pred CCeeEEEeCCCcEEEEEehHHHHhh
Q 025613 121 ITGFPVIDDDWKLVGLVSDYDLLAL 145 (250)
Q Consensus 121 ~~~~~Vvd~~g~~~GiVt~~dL~~~ 145 (250)
...+=+++++|..+|+++..+-++.
T Consensus 13 ~~eVrli~~~Ge~lGv~~~~eAl~~ 37 (78)
T 1tif_A 13 AREVRLIDQNGDQLGIKSKQEALEI 37 (78)
T ss_dssp CSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred CCEEEEECCCCcCCCcccHHHHHHH
Confidence 3557788999999999999999875
No 135
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=33.50 E-value=68 Score=22.90 Aligned_cols=52 Identities=8% Similarity=-0.106 Sum_probs=35.2
Q ss_pred EecCCCCHHHHHHHHH--HcCCCEEEEEcCCCcEE----EEEehHHHHHHHHhhhhhh
Q 025613 194 VVRETTNLEDAARLLL--ETKYRRLPVVDADGKLV----GIITRGNVVRAALQIKHAT 245 (250)
Q Consensus 194 ~v~~~~~l~~a~~~m~--~~~~~~lpVVd~~g~~v----GiIt~~Dil~~l~~~~~~~ 245 (250)
....+....++.+.+. -.++....++|.+|+++ |..+..++.+.+.++....
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~~~~ 142 (151)
T 3raz_A 85 WRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHSKC 142 (151)
T ss_dssp EEECCSCHHHHHHTTTCCSCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHHHTC-
T ss_pred EecCccchHHHHHHhCCccCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 3344455566666555 45677788999888764 5678888888888776554
No 136
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=31.55 E-value=31 Score=24.84 Aligned_cols=48 Identities=25% Similarity=0.171 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHcCCCEEEEEcCCCcEE----EEEehHHHHHHHHhhhhhhhc
Q 025613 200 NLEDAARLLLETKYRRLPVVDADGKLV----GIITRGNVVRAALQIKHATEM 247 (250)
Q Consensus 200 ~l~~a~~~m~~~~~~~lpVVd~~g~~v----GiIt~~Dil~~l~~~~~~~~~ 247 (250)
.-.++.+.+.-.++..+.++|.+|+++ |..+..++.+.+.++......
T Consensus 97 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~~~ 148 (154)
T 3ia1_A 97 RPHEVAARFKVLGQPWTFVVDREGKVVALFAGRAGREALLDALLLAGADLEG 148 (154)
T ss_dssp CHHHHHTTSSBCSSCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTTCCC--
T ss_pred chHHHHHHhCCCcccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhccCcccc
Confidence 445555555555777888999888765 446788888888887766544
No 137
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=30.03 E-value=39 Score=24.19 Aligned_cols=17 Identities=41% Similarity=0.878 Sum_probs=14.0
Q ss_pred EEEEEcCCCcEEEEEeh
Q 025613 215 RLPVVDADGKLVGIITR 231 (250)
Q Consensus 215 ~lpVVd~~g~~vGiIt~ 231 (250)
..||.+++|+++|+|..
T Consensus 105 ~~PV~~~~g~viGvv~v 121 (131)
T 1p0z_A 105 KSPIQDATGKVIGIVSV 121 (131)
T ss_dssp EEEEECTTCCEEEEEEE
T ss_pred EEeEECCCCCEEEEEEE
Confidence 36898878999999874
No 138
>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A
Probab=29.02 E-value=22 Score=23.96 Aligned_cols=35 Identities=17% Similarity=0.090 Sum_probs=24.1
Q ss_pred HHcCCCEEEEEc-CCCcEE-EEEehHHHHHHHHhhhhh
Q 025613 209 LETKYRRLPVVD-ADGKLV-GIITRGNVVRAALQIKHA 244 (250)
Q Consensus 209 ~~~~~~~lpVVd-~~g~~v-GiIt~~Dil~~l~~~~~~ 244 (250)
.+.+++ +|++- .+|+.+ |..+...|.+.+.+....
T Consensus 42 ~~~g~~-vPtl~~~~G~~v~g~~~~~~L~~~l~~~~~~ 78 (87)
T 1ttz_A 42 SAYGLR-VPVLRDPMGRELDWPFDAPRLRAWLDAAPHA 78 (87)
T ss_dssp HHHTTT-CSEEECTTCCEEESCCCHHHHHHHHHTCC--
T ss_pred HHhCCC-cCeEEEECCEEEeCCCCHHHHHHHHHHHHHH
Confidence 345676 78776 678877 678888888888765443
No 139
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=28.40 E-value=77 Score=22.65 Aligned_cols=43 Identities=12% Similarity=0.047 Sum_probs=30.2
Q ss_pred HHHHHHHHcCCCEEEEEcCCCcEE----EEEehHHHHHHHHhhhhhh
Q 025613 203 DAARLLLETKYRRLPVVDADGKLV----GIITRGNVVRAALQIKHAT 245 (250)
Q Consensus 203 ~a~~~m~~~~~~~lpVVd~~g~~v----GiIt~~Dil~~l~~~~~~~ 245 (250)
++.+.+.-.++....++|.+|+++ |..+..++.+.+.++..+.
T Consensus 108 ~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~~ 154 (158)
T 3eyt_A 108 RTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATLLGEA 154 (158)
T ss_dssp HHHHHTTCCSSSEEEEECTTSEEEEEEESCCCHHHHHHHHHHHHTSC
T ss_pred HHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHhccC
Confidence 344444456677788999899765 4567888888888776554
No 140
>3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels, C-terminal alpha-beta extra domain; 1.90A {Porcine respiratory and reproductivesyndrome virus} PDB: 3fao_A
Probab=27.93 E-value=29 Score=27.86 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=18.1
Q ss_pred cCCCEEEEEcCCCcEEEEEehHH
Q 025613 211 TKYRRLPVVDADGKLVGIITRGN 233 (250)
Q Consensus 211 ~~~~~lpVVd~~g~~vGiIt~~D 233 (250)
-|-.--||+|.+|+++||-+..|
T Consensus 124 pGdSGsPVvn~dG~VIGVHt~s~ 146 (213)
T 3fan_A 124 CGDSGSPVITEAGELVGVHTGSN 146 (213)
T ss_dssp CCSTTCEEEETTSCEEEEEEC--
T ss_pred CCCCCCccCCCCCcEEEEEeccC
Confidence 45566799999999999998876
No 141
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=26.56 E-value=65 Score=22.28 Aligned_cols=45 Identities=11% Similarity=0.120 Sum_probs=31.0
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCCcEE----EEEehHHHHHHHHhhhhhh
Q 025613 201 LEDAARLLLETKYRRLPVVDADGKLV----GIITRGNVVRAALQIKHAT 245 (250)
Q Consensus 201 l~~a~~~m~~~~~~~lpVVd~~g~~v----GiIt~~Dil~~l~~~~~~~ 245 (250)
-.+..+.+.-.++..+.++|.+|+++ |..+..++.+.+.+.....
T Consensus 75 ~~~~~~~~~v~~~Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~~~~ 123 (130)
T 2kuc_A 75 GVELRKKYGVHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVESE 123 (130)
T ss_dssp HHHHHHHTTCCSSCEEEEECTTSCEEEEEESCCCHHHHHHHHHHHHSCC
T ss_pred hHHHHHHcCCCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 44555555556677778888788755 5667888888887765543
No 142
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=25.73 E-value=1.1e+02 Score=22.15 Aligned_cols=32 Identities=28% Similarity=0.305 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCcEEEEEeh--------HHHHHHHHhhhhh
Q 025613 213 YRRLPVVDADGKLVGIITR--------GNVVRAALQIKHA 244 (250)
Q Consensus 213 ~~~lpVVd~~g~~vGiIt~--------~Dil~~l~~~~~~ 244 (250)
+....|+|.+|+++....- .++++.+.++..+
T Consensus 111 ~P~~~lid~~G~i~~~~~g~~~~~~~~~~il~~l~~l~~~ 150 (161)
T 3drn_A 111 ARITFVIDKKGIIRHIYNSQMNPANHVNEALKALKQIKEE 150 (161)
T ss_dssp CCEEEEECTTSBEEEEEECSSCTTHHHHHHHHHHHHHHHH
T ss_pred cceEEEECCCCEEEEEEecCCCCCcCHHHHHHHHHHhhhh
Confidence 6778899999998877654 3455555555444
No 143
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A*
Probab=25.30 E-value=50 Score=24.95 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=26.8
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHH
Q 025613 201 LEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 235 (250)
Q Consensus 201 l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil 235 (250)
+.+.++.+.+.|...+.|-. +|+++|+|...|.+
T Consensus 121 ~~~~~~~la~~G~T~v~VA~-d~~l~GvIalaD~i 154 (156)
T 1svj_A 121 VDQKVDQVARQGATPLVVVE-GSRVLGVIALKDIV 154 (156)
T ss_dssp HHHHHHHHHHTTCEEEEEEE-TTEEEEEEEEEECC
T ss_pred HHHHHHHHHhCCCCEEEEEE-CCEEEEEEEEecCC
Confidence 67777788888887776665 79999999987754
No 144
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=24.97 E-value=1.1e+02 Score=22.29 Aligned_cols=40 Identities=18% Similarity=0.151 Sum_probs=26.8
Q ss_pred HHHHHHHcCCCEEEEEcCCCcEEE---EE--ehHHHHHHHHhhhh
Q 025613 204 AARLLLETKYRRLPVVDADGKLVG---II--TRGNVVRAALQIKH 243 (250)
Q Consensus 204 a~~~m~~~~~~~lpVVd~~g~~vG---iI--t~~Dil~~l~~~~~ 243 (250)
..+.+.-.++..+.++|.+|++++ .. +..++.+.+.+...
T Consensus 108 l~~~~~v~~~Pt~~~~d~~G~~~~~~G~~~~~~~~l~~~l~~~l~ 152 (154)
T 2ju5_A 108 LKAQYKVTGFPELVFIDAEGKQLARMGFEPGGGAAYVSKVKSALK 152 (154)
T ss_dssp HHHHTTCCSSSEEEEECTTCCEEEEECCCTTCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCEEEEEcCCCCEEEEecCCCCCHHHHHHHHHHHHh
Confidence 334444456677888988887765 45 77788888776543
No 145
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=24.79 E-value=90 Score=22.22 Aligned_cols=93 Identities=17% Similarity=0.084 Sum_probs=53.5
Q ss_pred eeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeC-CCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613 95 LHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ 173 (250)
Q Consensus 95 ~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~-~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
+...+...+...| .+.+.++++.. -++|= ... .+..+|..++...
T Consensus 7 iY~~~~C~~c~ka-----~~~L~~~gi~~-~~~di~~~~----~~~~eL~~~l~~~------------------------ 52 (120)
T 3fz4_A 7 FYEYPKCSTCRRA-----KAELDDLAWDY-DAIDIKKNP----PAASLIRNWLENS------------------------ 52 (120)
T ss_dssp EEECSSCHHHHHH-----HHHHHHHTCCE-EEEETTTSC----CCHHHHHHHHHHS------------------------
T ss_pred EEeCCCChHHHHH-----HHHHHHcCCce-EEEEeccCc----hhHHHHHHHHHHc------------------------
Confidence 4555555667777 89999998764 33331 122 2778887664322
Q ss_pred HHHhccCCCcccccccCCCeEec--------CCCCHHHHHHHHHHcCC--CEEEEEcCCC-cEEEE
Q 025613 174 KLLSKTNGKMVGDLMTPAPVVVR--------ETTNLEDAARLLLETKY--RRLPVVDADG-KLVGI 228 (250)
Q Consensus 174 ~~~~~~~~~~v~~im~~~~~~v~--------~~~~l~~a~~~m~~~~~--~~lpVVd~~g-~~vGi 228 (250)
+.++.+++++.-.+.. ++.+.++++++|.+++. ++=+|+++++ .++|.
T Consensus 53 -------g~~~~~l~n~~~~~~k~l~l~~~~~~ls~~~~~~lm~~~p~LikRPIv~~~~~~~~vGf 111 (120)
T 3fz4_A 53 -------GLELKKFFNTSGQSYRALGLKDKLHQLSLDEAANLLASDGMLIKRPLLVKEGKIVQIGY 111 (120)
T ss_dssp -------CCCGGGGBCTTSHHHHHTTHHHHGGGCCHHHHHHHHHHCGGGBCSCEEEETTEEEEESS
T ss_pred -------CCCHHHHhCCCCcchhhcCcccccccCCHHHHHHHHHhChheEeccEEEECCEEEEEcC
Confidence 2346666655332211 25688999999998874 2222334333 45663
No 146
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}
Probab=24.63 E-value=44 Score=25.40 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=18.3
Q ss_pred HHcCCCEEEEEcCCCcEEEEEeh
Q 025613 209 LETKYRRLPVVDADGKLVGIITR 231 (250)
Q Consensus 209 ~~~~~~~lpVVd~~g~~vGiIt~ 231 (250)
...|-.--|++|.+|+++||.+.
T Consensus 122 i~pGnSGGPl~n~~G~VVGI~~~ 144 (163)
T 2w5e_A 122 TQDGMSGAPVCDKYCRVLAVHQT 144 (163)
T ss_dssp CSSCCTTCEEECTTSCEEEEEEE
T ss_pred eCCCCchhhEEcCCCEEEEEEcc
Confidence 34566667999999999999874
No 147
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=24.36 E-value=2.1e+02 Score=20.94 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCcEEEE----EehHHHHHHHHhhhhh
Q 025613 213 YRRLPVVDADGKLVGI----ITRGNVVRAALQIKHA 244 (250)
Q Consensus 213 ~~~lpVVd~~g~~vGi----It~~Dil~~l~~~~~~ 244 (250)
+....++|.+|+++.. .+..++.+.+.++..+
T Consensus 147 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~ 182 (183)
T 3lwa_A 147 IPTTIVLDKQHRPAAVFLREVTSKDVLDVALPLVDE 182 (183)
T ss_dssp CSEEEEECTTSCEEEEECSCCCHHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHhc
Confidence 4556789989987654 4678888888776543
No 148
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=24.22 E-value=43 Score=26.79 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=15.8
Q ss_pred CCCEEEEEcCCCcEEEEEeh
Q 025613 212 KYRRLPVVDADGKLVGIITR 231 (250)
Q Consensus 212 ~~~~lpVVd~~g~~vGiIt~ 231 (250)
|-.-=|++|.+|+++||++.
T Consensus 187 G~SGGPLv~~~G~vVGI~s~ 206 (231)
T 3tjo_A 187 GNAGGPLVNLDGEVIGINTL 206 (231)
T ss_dssp TTTTSEEECTTSCEEEEEEE
T ss_pred CCchhHeecCCCeEEEEEeE
Confidence 44455999888999999885
No 149
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Probab=23.93 E-value=78 Score=22.77 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=28.2
Q ss_pred HHHHHcCCCEEEEEcCCCcEEE----EEehHHHHHHHHhhhhhh
Q 025613 206 RLLLETKYRRLPVVDADGKLVG----IITRGNVVRAALQIKHAT 245 (250)
Q Consensus 206 ~~m~~~~~~~lpVVd~~g~~vG----iIt~~Dil~~l~~~~~~~ 245 (250)
+.+.-.++..+.++|.+|++++ ..+..++.+.+.+...+.
T Consensus 115 ~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~~~~ 158 (164)
T 2h30_A 115 QNLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNPNADL 158 (164)
T ss_dssp HHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTTCCC
T ss_pred HHcCCCccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 3344456777889998888654 467888888888776543
No 150
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=23.89 E-value=47 Score=22.97 Aligned_cols=37 Identities=8% Similarity=-0.001 Sum_probs=26.3
Q ss_pred HHHHHHcCCCEEEEEcCCCcEE------EEEehHHHHHHHHhh
Q 025613 205 ARLLLETKYRRLPVVDADGKLV------GIITRGNVVRAALQI 241 (250)
Q Consensus 205 ~~~m~~~~~~~lpVVd~~g~~v------GiIt~~Dil~~l~~~ 241 (250)
.+.+.-.++..+.++|.+|+++ |..+.+++.+.+.++
T Consensus 92 ~~~~~i~~~P~~~lid~~G~i~~~~~~~g~~~~~~l~~~l~~l 134 (136)
T 1lu4_A 92 WARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAAL 134 (136)
T ss_dssp HHHTTCCSSSEEEEECTTSCEEEECCSSSCCCHHHHHHHHHHC
T ss_pred HHhcCCCCCCEEEEECCCCcEEEEEcCCCccCHHHHHHHHHHH
Confidence 3344446677888999889876 666778888877664
No 151
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=23.37 E-value=41 Score=24.87 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=15.8
Q ss_pred CeeEEEeCCCcEEEEEe-hHHHH
Q 025613 122 TGFPVIDDDWKLVGLVS-DYDLL 143 (250)
Q Consensus 122 ~~~~Vvd~~g~~~GiVt-~~dL~ 143 (250)
+.+||.|++|+++|+|. ..|+-
T Consensus 109 ~~~Pi~d~~G~~~G~vev~~Dit 131 (151)
T 2qkp_A 109 TYAAVRDQAGDFQGVLEYVQDIK 131 (151)
T ss_dssp EEEEEECTTCCEEEEEEEEEECG
T ss_pred EEEEEECCCCCEEEEEEEEEECH
Confidence 35788888899999883 44443
No 152
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=23.10 E-value=1.1e+02 Score=20.60 Aligned_cols=38 Identities=16% Similarity=0.318 Sum_probs=25.3
Q ss_pred HHHHHHHcCCCEEEEEcCCCcEEE----EEehHHHHHHHHhh
Q 025613 204 AARLLLETKYRRLPVVDADGKLVG----IITRGNVVRAALQI 241 (250)
Q Consensus 204 a~~~m~~~~~~~lpVVd~~g~~vG----iIt~~Dil~~l~~~ 241 (250)
..+.+.-.++..+.++|.+|++++ ..+..++.+.+.++
T Consensus 96 ~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 137 (138)
T 4evm_A 96 LLETYGVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKEL 137 (138)
T ss_dssp HHHHTTCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred HHHHcCcccCCeEEEECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence 334444466778889998898754 45677777776553
No 153
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=22.91 E-value=52 Score=22.60 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=25.8
Q ss_pred HHHHcCCCEEEEEcCCCcE---EEEEehHHHHHHHHhhh
Q 025613 207 LLLETKYRRLPVVDADGKL---VGIITRGNVVRAALQIK 242 (250)
Q Consensus 207 ~m~~~~~~~lpVVd~~g~~---vGiIt~~Dil~~l~~~~ 242 (250)
.+.-.++..+.++|.+|++ .|..+..++.+.+.++.
T Consensus 96 ~~~i~~~P~~~~id~~g~i~~~~g~~~~~~l~~~l~~~l 134 (136)
T 1zzo_A 96 NFGVTQQPAYAFVDPHGNVDVVRGRMSQDELTRRVTALT 134 (136)
T ss_dssp HTTCCSSSEEEEECTTCCEEEEESCCCHHHHHHHHHHHC
T ss_pred HcCCCCCceEEEECCCCCEEEEecCCCHHHHHHHHHHHh
Confidence 3334566778899888876 56678888888877654
No 154
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=22.87 E-value=94 Score=22.00 Aligned_cols=42 Identities=14% Similarity=0.109 Sum_probs=25.9
Q ss_pred HHHHHHcCCCEEEEEcCCCcEEEEE------ehHHHHHHHHhhhhhhh
Q 025613 205 ARLLLETKYRRLPVVDADGKLVGII------TRGNVVRAALQIKHATE 246 (250)
Q Consensus 205 ~~~m~~~~~~~lpVVd~~g~~vGiI------t~~Dil~~l~~~~~~~~ 246 (250)
.+.+.-.++....|+|.+|++++.. +..++.+.+.++..+..
T Consensus 99 ~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l~~~~~ 146 (154)
T 3kcm_A 99 GKLYGTTGVPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNELSKAR 146 (154)
T ss_dssp HHHHTCCSBCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC-----
T ss_pred HHHhCCCCCCeEEEECCCCcEEEEEcCCCccccHHHHHHHHHHHHHhh
Confidence 3444445666677999999887764 45578888877765543
No 155
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=22.45 E-value=44 Score=26.72 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=16.2
Q ss_pred cCCCEEEEEcCCCcEEEEEeh
Q 025613 211 TKYRRLPVVDADGKLVGIITR 231 (250)
Q Consensus 211 ~~~~~lpVVd~~g~~vGiIt~ 231 (250)
.|-.-=|++|.+|+++||++.
T Consensus 173 ~G~SGGPlv~~~G~vvGI~s~ 193 (237)
T 3lgi_A 173 HGNSGGALVNSLGELMGINTL 193 (237)
T ss_dssp TTCTTCEEECTTCCEEEEECC
T ss_pred CCCchHHeeCCCCeEEEEEee
Confidence 344556999988999999765
No 156
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=21.70 E-value=1.1e+02 Score=21.70 Aligned_cols=38 Identities=16% Similarity=0.139 Sum_probs=26.5
Q ss_pred HHHcCCCEEEEEcCCCcEEE----EEehHHHHHHHHhhhhhh
Q 025613 208 LLETKYRRLPVVDADGKLVG----IITRGNVVRAALQIKHAT 245 (250)
Q Consensus 208 m~~~~~~~lpVVd~~g~~vG----iIt~~Dil~~l~~~~~~~ 245 (250)
+.-.++..+.++|.+|++++ ..+..++.+.+.++....
T Consensus 99 ~~v~~~P~~~lid~~G~i~~~~~G~~~~~~l~~~l~~ll~~~ 140 (151)
T 2f9s_A 99 YDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMNLIKPGE 140 (151)
T ss_dssp TTCCSSCEEEEECTTSEEEEEEESCCCHHHHHHHHHHHSCC-
T ss_pred cCCCCCCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHhhh
Confidence 33456677788998888664 457788888887776543
No 157
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=21.69 E-value=1.2e+02 Score=21.48 Aligned_cols=38 Identities=21% Similarity=0.074 Sum_probs=25.8
Q ss_pred HHHcCCCEEEEEcCCCcEEEE----EehHHHHHHHHhhhhhh
Q 025613 208 LLETKYRRLPVVDADGKLVGI----ITRGNVVRAALQIKHAT 245 (250)
Q Consensus 208 m~~~~~~~lpVVd~~g~~vGi----It~~Dil~~l~~~~~~~ 245 (250)
+.-.++....++|.+|++++. .+..++.+.+.++..+.
T Consensus 113 ~~v~~~P~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l~~~ 154 (156)
T 1kng_A 113 WGVYGVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEKA 154 (156)
T ss_dssp TTCCSSCEEEEECTTSBEEEEEESCCCHHHHHHTHHHHHHHH
T ss_pred cCcCccCeEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 333455666788888887654 57778888887776553
No 158
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10
Probab=21.22 E-value=84 Score=23.83 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=25.1
Q ss_pred CCCEEEEEcCCCcEEEEE--------ehHHHHHHHHhhhhhh
Q 025613 212 KYRRLPVVDADGKLVGII--------TRGNVVRAALQIKHAT 245 (250)
Q Consensus 212 ~~~~lpVVd~~g~~vGiI--------t~~Dil~~l~~~~~~~ 245 (250)
++....++|.+|+++... +..++++.+.++....
T Consensus 122 ~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~~~ 163 (198)
T 1zof_A 122 ALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFE 163 (198)
T ss_dssp ECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHHHHHH
T ss_pred ccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHHHhh
Confidence 455678999999988776 4578888887776433
No 159
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=20.90 E-value=1.2e+02 Score=22.43 Aligned_cols=41 Identities=10% Similarity=0.016 Sum_probs=28.7
Q ss_pred HHHHHHcCCCEEEEEcCCCcEE----EEEehHHHHHHHHhhhhhh
Q 025613 205 ARLLLETKYRRLPVVDADGKLV----GIITRGNVVRAALQIKHAT 245 (250)
Q Consensus 205 ~~~m~~~~~~~lpVVd~~g~~v----GiIt~~Dil~~l~~~~~~~ 245 (250)
.+.+.-.++....|+|.+|+++ |.++..++.+.+.+...+.
T Consensus 125 ~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~l 169 (176)
T 3kh7_A 125 GLDLGVYGAPETYLIDKQGIIRHKIVGVVDQKVWREQLAPLYQQL 169 (176)
T ss_dssp HHHHTCCSSCEEEEECTTCBEEEEEESCCCHHHHHHHTHHHHHHH
T ss_pred HHHcCCCCCCeEEEECCCCeEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 3444445667778999999765 5568888888887776654
No 160
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=20.86 E-value=55 Score=26.60 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=16.5
Q ss_pred cCCCEEEEEcCCCcEEEEEeh
Q 025613 211 TKYRRLPVVDADGKLVGIITR 231 (250)
Q Consensus 211 ~~~~~lpVVd~~g~~vGiIt~ 231 (250)
.|-.-=|++|.+|+++||.|.
T Consensus 184 ~G~SGGPLvn~~G~vVGI~s~ 204 (245)
T 3sti_A 184 RGNSGGALLNLNGELIGINTA 204 (245)
T ss_dssp TTTTTSEEECTTSCEEEEEEC
T ss_pred CCcchhHeecCCCeEEEEEEe
Confidence 355566899988999999775
No 161
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=20.74 E-value=54 Score=26.18 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=16.8
Q ss_pred CCCeeEEEeCCCcEEEEEeh
Q 025613 120 RITGFPVIDDDWKLVGLVSD 139 (250)
Q Consensus 120 ~~~~~~Vvd~~g~~~GiVt~ 139 (250)
+-++=|++|.+|+++|+++.
T Consensus 187 G~SGGPLv~~~G~vVGI~s~ 206 (231)
T 3tjo_A 187 GNAGGPLVNLDGEVIGINTL 206 (231)
T ss_dssp TTTTSEEECTTSCEEEEEEE
T ss_pred CCchhHeecCCCeEEEEEeE
Confidence 44677999988999999985
No 162
>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A
Probab=20.67 E-value=56 Score=26.02 Aligned_cols=21 Identities=19% Similarity=0.485 Sum_probs=16.5
Q ss_pred CCCEEEEEcCCCcEEEEEehH
Q 025613 212 KYRRLPVVDADGKLVGIITRG 232 (250)
Q Consensus 212 ~~~~lpVVd~~g~~vGiIt~~ 232 (250)
|-.-=|++|.+|+++||++..
T Consensus 181 GdSGGPLv~~~G~vvGI~s~~ 201 (237)
T 3k6y_A 181 GDSGGPLIDLNGQVLGVVFGA 201 (237)
T ss_dssp TCTTCEEECTTSCEEEEEEEE
T ss_pred CccHHHEECCCCEEEEEEEee
Confidence 455568998889999999763
No 163
>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus}
Probab=20.54 E-value=51 Score=25.68 Aligned_cols=20 Identities=15% Similarity=0.483 Sum_probs=15.6
Q ss_pred CCCEEEEEcCCCcEEEEEeh
Q 025613 212 KYRRLPVVDADGKLVGIITR 231 (250)
Q Consensus 212 ~~~~lpVVd~~g~~vGiIt~ 231 (250)
|-.--|+++.+|+++||++.
T Consensus 156 GdSGGPlv~~~g~lvGI~s~ 175 (210)
T 2as9_A 156 GNSGSPVLNSNNEVIGVVYG 175 (210)
T ss_dssp TCTTCEEECTTSCEEEEECC
T ss_pred CCccCcEECCCCeEEEEEec
Confidence 44456888877999999975
Done!