BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025615
(250 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q820E0|MURG_CHLCV UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Chlamydophila caviae (strain GPIC)
GN=murG PE=3 SV=1
Length = 358
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 66 PAMCKMPVY----PGGLPDIRTPSSSSRKVTGTLFGYRKGKVSLSI 107
P +C + V+ P GLP + +P ++ R+++ GYRK K L I
Sbjct: 47 PNLCDLDVHYKEIPSGLPTVASPVTAIRRMSSLYNGYRKAKKELCI 92
>sp|Q66H12|NAGAB_RAT Alpha-N-acetylgalactosaminidase OS=Rattus norvegicus GN=Naga PE=2
SV=1
Length = 415
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 40 PSQKKKNRPKMFRVFRSVFRSFPIVSPAMCKMPVYPGGLPDIRTPSSSSRKVTGTLFGYR 99
P ++ + PKM + R PI C P Y GGLP P + +V GT +R
Sbjct: 162 PKERAEGYPKMAAALNATGR--PIAFS--CSWPAYEGGLP----PKVNYTEVAGTCNLWR 213
Query: 100 KGKVSLSIQENPKCLPTVIVELAMQTNVLQKEMGSG 135
K IQ++ K + +++ ++LQ G G
Sbjct: 214 NYK---DIQDSWKSVLSILDWFVKHQDILQPVSGPG 246
>sp|Q633N5|SYFB_BACCZ Phenylalanine--tRNA ligase beta subunit OS=Bacillus cereus (strain
ZK / E33L) GN=pheT PE=3 SV=1
Length = 806
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 21/67 (31%)
Query: 141 LECEKRPEKDKV-KLL-----EEPLWSMFCNGKKTGYGVKREANDEDFHVMELLRPVSMG 194
LECEK PE DK+ K L EEP+ + C G+K PV+
Sbjct: 52 LECEKHPEADKLSKCLIDIGEEEPV-QIICGAANIAKGLK--------------VPVAKV 96
Query: 195 GGVLPGN 201
G VLPGN
Sbjct: 97 GAVLPGN 103
>sp|Q72ZI2|SYFB_BACC1 Phenylalanine--tRNA ligase beta subunit OS=Bacillus cereus (strain
ATCC 10987) GN=pheT PE=3 SV=1
Length = 806
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 19/66 (28%)
Query: 141 LECEKRPEKDK-----VKLLEEPLWSMFCNGKKTGYGVKREANDEDFHVMELLRPVSMGG 195
LECEK PE DK + + EE + C G+K PV+ G
Sbjct: 52 LECEKHPEADKLSKCLIDIGEEEPVQIICGAANIAKGLK--------------VPVAKVG 97
Query: 196 GVLPGN 201
VLPGN
Sbjct: 98 AVLPGN 103
>sp|Q6HCW8|SYFB_BACHK Phenylalanine--tRNA ligase beta subunit OS=Bacillus thuringiensis
subsp. konkukian (strain 97-27) GN=pheT PE=3 SV=1
Length = 806
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 21/67 (31%)
Query: 141 LECEKRPEKDKV-KLL-----EEPLWSMFCNGKKTGYGVKREANDEDFHVMELLRPVSMG 194
LECEK PE DK+ K L EEP+ + C G+K PV+
Sbjct: 52 LECEKHPEADKLSKCLIDIGEEEPV-QIICGAANIAKGLK--------------VPVAKV 96
Query: 195 GGVLPGN 201
G VLPGN
Sbjct: 97 GAVLPGN 103
>sp|Q81L31|SYFB_BACAN Phenylalanine--tRNA ligase beta subunit OS=Bacillus anthracis
GN=pheT PE=3 SV=1
Length = 806
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 21/67 (31%)
Query: 141 LECEKRPEKDKV-KLL-----EEPLWSMFCNGKKTGYGVKREANDEDFHVMELLRPVSMG 194
LECEK PE DK+ K L EEP+ + C G+K PV+
Sbjct: 52 LECEKHPEADKLSKCLIDIGEEEPV-QIICGAANIAKGLK--------------VPVAKV 96
Query: 195 GGVLPGN 201
G VLPGN
Sbjct: 97 GAVLPGN 103
>sp|Q817I7|SYFB_BACCR Phenylalanine--tRNA ligase beta subunit OS=Bacillus cereus (strain
ATCC 14579 / DSM 31) GN=pheT PE=3 SV=1
Length = 806
Score = 31.6 bits (70), Expect = 5.3, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 21/67 (31%)
Query: 141 LECEKRPEKDKV-KLL-----EEPLWSMFCNGKKTGYGVKREANDEDFHVMELLRPVSMG 194
LECEK PE DK+ K L EEP+ + C G+K PV+
Sbjct: 52 LECEKHPEADKLSKCLIDIGEEEPV-QIICGAANIAKGLK--------------VPVAKV 96
Query: 195 GGVLPGN 201
G VLPGN
Sbjct: 97 GAVLPGN 103
>sp|Q6CIL8|RGT1_KLULA Glucose transport transcription regulator RGT1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=RGT1 PE=3 SV=1
Length = 1007
Score = 31.2 bits (69), Expect = 8.1, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 14/99 (14%)
Query: 33 QPLSLVQPSQKKKNRPKMFRVFRSVFRSFPIVSPAMCKMPVYPGGLPDIRTPSSSSR--- 89
+PL LV + K P +FR F S+ R F + + +P G LP++ TP +R
Sbjct: 762 KPLPLVGEHNENKTIPGLFRAFLSIKRQF---TDTLLDLPDAEGKLPEM-TPELVTRLSN 817
Query: 90 ---KVTGTLFGYRKGKVSLSIQENPKCLPTVIVELAMQT 125
+T T+ K L+++ NP + + +MQT
Sbjct: 818 MICDLTTTIHDLLK----LNVEVNPTNCLELFPDNSMQT 852
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,756,859
Number of Sequences: 539616
Number of extensions: 4422965
Number of successful extensions: 13689
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 13590
Number of HSP's gapped (non-prelim): 121
length of query: 250
length of database: 191,569,459
effective HSP length: 115
effective length of query: 135
effective length of database: 129,513,619
effective search space: 17484338565
effective search space used: 17484338565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)