Query 025615
Match_columns 250
No_of_seqs 90 out of 102
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 07:39:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025615.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025615hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04759 DUF617: Protein of un 100.0 5.3E-97 1E-101 629.7 17.3 161 90-250 1-166 (166)
2 TIGR01570 A_thal_3588 uncharac 100.0 5.4E-96 1E-100 620.7 16.4 160 91-250 1-161 (161)
3 COG2514 Predicted ring-cleavag 73.7 1.6 3.5E-05 40.9 1.2 13 227-239 108-120 (265)
4 PF15566 Imm18: Immunity prote 33.6 6.1 0.00013 29.1 -1.8 35 209-244 2-36 (52)
5 PF02955 GSH-S_ATP: Prokaryoti 32.6 21 0.00047 30.9 1.0 22 162-184 89-110 (173)
6 PF12851 Tet_JBP: Oxygenase do 27.4 32 0.00069 29.5 1.2 32 159-190 1-36 (171)
7 PF10365 DUF2436: Domain of un 25.9 40 0.00087 29.8 1.5 20 129-148 18-37 (161)
8 PF12681 Glyoxalase_2: Glyoxal 23.3 43 0.00094 23.9 1.1 11 228-238 93-103 (108)
9 PF08150 FerB: FerB (NUC096) d 23.2 53 0.0011 25.7 1.6 18 154-172 5-22 (76)
10 COG1886 FliN Flagellar motor s 22.1 68 0.0015 26.8 2.1 19 153-172 102-120 (136)
11 TIGR01380 glut_syn glutathione 21.5 56 0.0012 29.9 1.7 34 162-200 211-244 (312)
12 PF08531 Bac_rhamnosid_N: Alph 20.9 76 0.0017 26.8 2.2 15 159-173 15-29 (172)
13 cd06410 PB1_UP2 Uncharacterize 20.8 86 0.0019 25.0 2.4 66 162-232 18-94 (97)
No 1
>PF04759 DUF617: Protein of unknown function, DUF617; InterPro: IPR006460 This family of hypothetical plant proteins are defined by a region of about 170 amino acids found at the C terminus. These proteins have highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterised protein. At least 12 distinct members are found in Arabidopsis thaliana (Mouse-ear cress).
Probab=100.00 E-value=5.3e-97 Score=629.66 Aligned_cols=161 Identities=64% Similarity=1.156 Sum_probs=153.1
Q ss_pred eeEEEeecccCCceeeeeecCCCCCCeeEeeeccchhHHHHHhccCceeEEEeeccCCCcCc----ccccccceeeeeec
Q 025615 90 KVTGTLFGYRKGKVSLSIQENPKCLPTVIVELAMQTNVLQKEMGSGMVRIALECEKRPEKDK----VKLLEEPLWSMFCN 165 (250)
Q Consensus 90 ~vTGTlFG~RrGrV~~aiQedp~~~P~lllELa~pT~~L~~EM~~G~vRIaLEcek~~~~~~----~~Ll~ep~WtmyCN 165 (250)
+|||||||||||||+||||+||++.|+||||||+||++|+|||++|+|||||||||++..++ .+||+||+|+||||
T Consensus 1 rvtGTlFG~RrGrV~~aiQ~d~~s~P~lllELa~pT~~L~~EM~~GlvRIaLEc~k~~~~~~~~~~~~Ll~ep~W~myCN 80 (166)
T PF04759_consen 1 RVTGTLFGHRRGRVSFAIQEDPRSPPILLLELAMPTSALVREMASGLVRIALECEKRKGKSKGAASGSLLEEPVWTMYCN 80 (166)
T ss_pred CcEEEEEecccceEEEEEecCCCCCCeEEEEecCcHHHHHHHhhcCeEEEEEEecCCCCCCCcccccccccceeEEEEEC
Confidence 69999999999999999999999999999999999999999999999999999999875544 36999999999999
Q ss_pred CeeeeeeeeccCChhhHHHHHhhhccccccceecC-CCCCCCCCCceeeeeeccceeeecCCcceeeeecCCCCCCCceE
Q 025615 166 GKKTGYGVKREANDEDFHVMELLRPVSMGGGVLPG-NSDAEGADGELAYIRAHFERVVGSKDSETLYMLSPEGNNGPELS 244 (250)
Q Consensus 166 GrK~GyAvRRe~t~~D~~VL~~l~~VSmGAGVLP~-~~~~~~~dgEl~YMRA~FERVVGS~DSEsfyMinPdg~~GpELS 244 (250)
||||||||||+|||+||+||++|++|||||||||+ +...++.|||||||||+|||||||+|||||||||||||+|||||
T Consensus 81 GrK~GyAvRRe~t~~d~~vL~~l~~VS~GAGVlP~~~~~~~~~~gel~YMRA~FERVVGS~DSEsfyminPdg~~GpELS 160 (166)
T PF04759_consen 81 GRKVGYAVRREPTDDDLHVLELLRSVSMGAGVLPGGGGGSGGGDGELMYMRARFERVVGSRDSESFYMINPDGNGGPELS 160 (166)
T ss_pred CceeeeeEEcCCCHHHHHHHHhhheeeecceeccCccccCCCCCceEeeeeeeeeeeeccCCcceeEEECCCCCCCceEE
Confidence 99999999999999999999999999999999999 33345789999999999999999999999999999999999999
Q ss_pred EEEEeC
Q 025615 245 IFFVRI 250 (250)
Q Consensus 245 IFf~Ri 250 (250)
|||+||
T Consensus 161 IFf~Rv 166 (166)
T PF04759_consen 161 IFFLRV 166 (166)
T ss_pred EEEEeC
Confidence 999997
No 2
>TIGR01570 A_thal_3588 uncharacterized plant-specific domain TIGR01570. This model represents a region of about 170 amino acids found at the C-terminus of a family of plant proteins. These proteins typically have additional highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterized protein. At least 12 distinct members are found in Arabidopsis thaliana.
Probab=100.00 E-value=5.4e-96 Score=620.70 Aligned_cols=160 Identities=61% Similarity=1.054 Sum_probs=152.0
Q ss_pred eEEEeecccCCceeeeeecCCCCCCeeEeeeccchhHHHHHhccCceeEEEeeccCCCcCcccccccceeeeeecCeeee
Q 025615 91 VTGTLFGYRKGKVSLSIQENPKCLPTVIVELAMQTNVLQKEMGSGMVRIALECEKRPEKDKVKLLEEPLWSMFCNGKKTG 170 (250)
Q Consensus 91 vTGTlFG~RrGrV~~aiQedp~~~P~lllELa~pT~~L~~EM~~G~vRIaLEcek~~~~~~~~Ll~ep~WtmyCNGrK~G 170 (250)
|||||||||||||+||||+||+|.|+||||||+||++|+|||++|+|||||||||++..++.+||+||+|+|||||||||
T Consensus 1 vtGTlfG~RrgrV~~~iQ~dp~~~P~lllELa~pt~~L~~Em~~G~vRIaLEc~k~~~~~~~~ll~ep~W~myCNGrk~G 80 (161)
T TIGR01570 1 VTGTIFGYRKGRVNFCIQEDRRSLPILLLELAMPTSVLQKEMSSGLVRIALECETRKQDKDSKLLSEPVWTMYCNGRKVG 80 (161)
T ss_pred CeEEEecCCCCcceeeecCCCCCCCeeeeeecCcHHHHHHHhhcCceeEEeeeeccccCCCccceeeeeEEEEECCceee
Confidence 79999999999999999999999999999999999999999999999999999998766678999999999999999999
Q ss_pred eeeeccCChhhHHHHHhhhccccccceecCCCCCCCCC-CceeeeeeccceeeecCCcceeeeecCCCCCCCceEEEEEe
Q 025615 171 YGVKREANDEDFHVMELLRPVSMGGGVLPGNSDAEGAD-GELAYIRAHFERVVGSKDSETLYMLSPEGNNGPELSIFFVR 249 (250)
Q Consensus 171 yAvRRe~t~~D~~VL~~l~~VSmGAGVLP~~~~~~~~d-gEl~YMRA~FERVVGS~DSEsfyMinPdg~~GpELSIFf~R 249 (250)
|||||+|||+||+||++|++|||||||||+....++.| ||||||||+|||||||||||||||||||||+||||||||+|
T Consensus 81 yAvRR~~t~~d~~vL~~l~~VS~GAGVlP~~~~~~~~~~gel~YMRA~FERVVGS~DSEsfyminPdg~~gpELSIF~lR 160 (161)
T TIGR01570 81 YAVKRSASEEDMTVLTALSKVSVGAGVLPCGKELGGFDEDELMYMRASFERVVGSKDSESFYMINPEGNIGQELSIFFLR 160 (161)
T ss_pred EeEecCCCHHHHHHHHhhheeeecceeccCCCCCCCCCCceEEEEeeeeeEeccccCceeEEeECCCCCCCceEEEEEEe
Confidence 99999999999999999999999999999643333445 99999999999999999999999999999999999999999
Q ss_pred C
Q 025615 250 I 250 (250)
Q Consensus 250 i 250 (250)
+
T Consensus 161 ~ 161 (161)
T TIGR01570 161 S 161 (161)
T ss_pred C
Confidence 6
No 3
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=73.75 E-value=1.6 Score=40.87 Aligned_cols=13 Identities=62% Similarity=1.043 Sum_probs=12.1
Q ss_pred cceeeeecCCCCC
Q 025615 227 SETLYMLSPEGNN 239 (250)
Q Consensus 227 SEsfyMinPdg~~ 239 (250)
|||+|+-||+||+
T Consensus 108 SEAlYl~DPEGNG 120 (265)
T COG2514 108 SEALYLEDPEGNG 120 (265)
T ss_pred heeeeecCCCCCe
Confidence 9999999999974
No 4
>PF15566 Imm18: Immunity protein 18
Probab=33.63 E-value=6.1 Score=29.07 Aligned_cols=35 Identities=20% Similarity=0.366 Sum_probs=28.3
Q ss_pred CceeeeeeccceeeecCCcceeeeecCCCCCCCceE
Q 025615 209 GELAYIRAHFERVVGSKDSETLYMLSPEGNNGPELS 244 (250)
Q Consensus 209 gEl~YMRA~FERVVGS~DSEsfyMinPdg~~GpELS 244 (250)
.+|.|+...-++.+++.+.+--|+|.|+ ++|-|||
T Consensus 2 egL~~L~~~l~~L~~~~~~~H~Hlmtp~-WgG~ELs 36 (52)
T PF15566_consen 2 EGLELLQDQLENLQEKEPFDHEHLMTPD-WGGEELS 36 (52)
T ss_pred chHHHHHHHHHHHHhccCCCCceecccc-ccccccc
Confidence 3577888888889999888888999996 5677776
No 5
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=32.62 E-value=21 Score=30.90 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=14.3
Q ss_pred eeecCeeeeeeeeccCChhhHHH
Q 025615 162 MFCNGKKTGYGVKREANDEDFHV 184 (250)
Q Consensus 162 myCNGrK~GyAvRRe~t~~D~~V 184 (250)
+++||+=+| |++|.+.+.|+++
T Consensus 89 i~~nG~~~~-av~R~P~~gd~R~ 110 (173)
T PF02955_consen 89 ILFNGEPSH-AVRRIPAKGDFRS 110 (173)
T ss_dssp EEETTEE-S-EEEEE--SS-S--
T ss_pred EEECCEEhH-HeecCCCCCCcee
Confidence 579999999 9999998888875
No 6
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=27.40 E-value=32 Score=29.51 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=18.9
Q ss_pred eeeeeecCeeeee---eeecc-CChhhHHHHHhhhc
Q 025615 159 LWSMFCNGKKTGY---GVKRE-ANDEDFHVMELLRP 190 (250)
Q Consensus 159 ~WtmyCNGrK~Gy---AvRRe-~t~~D~~VL~~l~~ 190 (250)
-|.||-||+|.+= +.|+- .+.++..+.+.|+.
T Consensus 1 ~~~~y~~~~~~~r~~~~~rk~~~~~~~~~~~~~l~~ 36 (171)
T PF12851_consen 1 SWSMYFNGCKFPRGSKKPRKFRLTPENPKLEENLQE 36 (171)
T ss_pred CeeEEeCCCCccccccccceeecccccccHHHHHHH
Confidence 3999999988765 22322 44555445444443
No 7
>PF10365 DUF2436: Domain of unknown function (DUF2436); InterPro: IPR018832 Gingipains R and K are endopeptidases with specificity for arginyl and lysyl bonds, respectively. Like other cysteine peptidases, they require reducing conditions for activity. They are maximally active at approximately neutral pH. Gingipains R and K are secreted by the bacterium Porphyromonas gingivalis (Bacteroides gingivalis). The bacterium is a major pathogen in periodontal disease, and the many ways in which the activities of the gingipains may contribute to the disease processes have been reviewed []. These enzymes are also involved in the hemagglutinating activity of the organisms. This entry represents a central region found in gingipain K peptidases, active on lysyl bonds; they belong to the MEROPS peptidase family C25 (gingipain family, clan CD).
Probab=25.92 E-value=40 Score=29.77 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=16.0
Q ss_pred HHHhccCceeEEEeeccCCC
Q 025615 129 QKEMGSGMVRIALECEKRPE 148 (250)
Q Consensus 129 ~~EM~~G~vRIaLEcek~~~ 148 (250)
+++.+.|.+||.||.+..++
T Consensus 18 ~~~~~~g~A~IILeah~vW~ 37 (161)
T PF10365_consen 18 SQDWQAGMARIILEAHNVWG 37 (161)
T ss_pred ccccccCceEEEEecccccc
Confidence 35578899999999887663
No 8
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=23.26 E-value=43 Score=23.90 Aligned_cols=11 Identities=36% Similarity=1.129 Sum_probs=7.9
Q ss_pred ceeeeecCCCC
Q 025615 228 ETLYMLSPEGN 238 (250)
Q Consensus 228 EsfyMinPdg~ 238 (250)
-.||++||||+
T Consensus 93 ~~~~~~DPdG~ 103 (108)
T PF12681_consen 93 RSFYFIDPDGN 103 (108)
T ss_dssp EEEEEE-TTS-
T ss_pred EEEEEECCCCC
Confidence 58999999986
No 9
>PF08150 FerB: FerB (NUC096) domain; InterPro: IPR012561 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This is central domain B in proteins of the Ferlin family [].; GO: 0016021 integral to membrane
Probab=23.22 E-value=53 Score=25.73 Aligned_cols=18 Identities=22% Similarity=0.674 Sum_probs=14.6
Q ss_pred ccccceeeeeecCeeeeee
Q 025615 154 LLEEPLWSMFCNGKKTGYG 172 (250)
Q Consensus 154 Ll~ep~WtmyCNGrK~GyA 172 (250)
|=|.-+| |.||+|++.||
T Consensus 5 iPDV~IW-Ml~g~kRvAYa 22 (76)
T PF08150_consen 5 IPDVFIW-MLSGNKRVAYA 22 (76)
T ss_pred CCcEEEE-EEeCCeEEEEE
Confidence 4456677 78999999999
No 10
>COG1886 FliN Flagellar motor switch/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.14 E-value=68 Score=26.75 Aligned_cols=19 Identities=42% Similarity=0.615 Sum_probs=15.5
Q ss_pred cccccceeeeeecCeeeeee
Q 025615 153 KLLEEPLWSMFCNGKKTGYG 172 (250)
Q Consensus 153 ~Ll~ep~WtmyCNGrK~GyA 172 (250)
++..+|+|- ++|||++||+
T Consensus 102 ~~~~~~VdI-~vNg~~Ig~G 120 (136)
T COG1886 102 KLAGEPVDI-LVNGRLIGRG 120 (136)
T ss_pred CcCCCceEE-EECCEEEEEE
Confidence 466788875 6999999996
No 11
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=21.50 E-value=56 Score=29.95 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=23.7
Q ss_pred eeecCeeeeeeeeccCChhhHHHHHhhhccccccceecC
Q 025615 162 MFCNGKKTGYGVKREANDEDFHVMELLRPVSMGGGVLPG 200 (250)
Q Consensus 162 myCNGrK~GyAvRRe~t~~D~~VL~~l~~VSmGAGVLP~ 200 (250)
+.-||+-+|||++|.+.+.||+. -++.|+-+-|.
T Consensus 211 ~vv~g~vv~~ai~R~~~~gd~r~-----N~~~Gg~~~~~ 244 (312)
T TIGR01380 211 LLIDGEPIGAAVARIPAGGEFRG-----NLAVGGRGEAT 244 (312)
T ss_pred EEECCeEEEEEEEecCCCCCccc-----cccCCceeecc
Confidence 45688889999999988877754 33455544443
No 12
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=20.92 E-value=76 Score=26.76 Aligned_cols=15 Identities=27% Similarity=0.731 Sum_probs=12.9
Q ss_pred eeeeeecCeeeeeee
Q 025615 159 LWSMFCNGKKTGYGV 173 (250)
Q Consensus 159 ~WtmyCNGrK~GyAv 173 (250)
...+|.||++||-.+
T Consensus 15 ~Y~l~vNG~~V~~~~ 29 (172)
T PF08531_consen 15 RYELYVNGERVGDGP 29 (172)
T ss_dssp EEEEEETTEEEEEE-
T ss_pred eEEEEECCEEeeCCc
Confidence 678999999999888
No 13
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=20.83 E-value=86 Score=25.03 Aligned_cols=66 Identities=23% Similarity=0.407 Sum_probs=45.1
Q ss_pred eeecCeeeeeeeeccCChhhHHHHHhhhccccccce-------ecCCCCCC----CCCCceeeeeeccceeeecCCccee
Q 025615 162 MFCNGKKTGYGVKREANDEDFHVMELLRPVSMGGGV-------LPGNSDAE----GADGELAYIRAHFERVVGSKDSETL 230 (250)
Q Consensus 162 myCNGrK~GyAvRRe~t~~D~~VL~~l~~VSmGAGV-------LP~~~~~~----~~dgEl~YMRA~FERVVGS~DSEsf 230 (250)
-|++|+.=.-+|-|..+=.|+ .+.|... .+..+ ||++..+. ..|+||..|-..++|+ +.++..+
T Consensus 18 ~Y~GG~tr~i~V~r~~s~~el--~~kl~~~-~~~~~~~~lky~Lp~edld~Lisv~~DeDl~~M~~e~~~~--~~~~~ri 92 (97)
T cd06410 18 RYVGGETRIVSVDRSISFKEL--VSKLSEL-FGAGVVVTLKYQLPDEDLDALISVSNDEDLKNMMEEYDRL--SGGSARL 92 (97)
T ss_pred EEcCCceEEEEEcCCCCHHHH--HHHHHHH-hCCCCceEEEEEcCCCCcceeEEecCcHHHHHHHHhhccc--cCCCceE
Confidence 599999999999999886663 2222222 23334 67653221 3578999999999998 6666665
Q ss_pred ee
Q 025615 231 YM 232 (250)
Q Consensus 231 yM 232 (250)
++
T Consensus 93 rv 94 (97)
T cd06410 93 RV 94 (97)
T ss_pred EE
Confidence 54
Done!