Query 025615
Match_columns 250
No_of_seqs 90 out of 102
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 13:58:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025615.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025615hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kd2_A FAS apoptotic inhibitor 39.4 12 0.00041 29.2 1.6 21 135-169 22-42 (94)
2 2l6o_A Uncharacterized protein 19.8 55 0.0019 26.1 2.2 25 193-217 1-31 (114)
3 4gym_A Glyoxalase/bleomycin re 17.8 47 0.0016 24.3 1.4 10 229-238 117-126 (149)
4 3rri_A Glyoxalase/bleomycin re 13.3 73 0.0025 22.4 1.4 10 229-238 112-121 (135)
5 3sk2_A EHPR; antibiotic resist 12.4 80 0.0028 22.4 1.4 11 228-238 114-124 (132)
6 2it9_A Hypothetical protein; s 12.4 1.3E+02 0.0043 24.6 2.6 29 136-176 63-91 (127)
7 3jyb_A Sensor protein; beta ba 12.0 1.7E+02 0.006 22.1 3.3 29 95-124 41-69 (145)
8 2xbz_A RETS-hybrid sensor kina 11.5 1.2E+02 0.0042 24.0 2.3 30 95-125 67-96 (171)
9 2nvn_A Hypothetical protein; s 11.5 1.3E+02 0.0045 24.4 2.4 26 137-174 66-91 (122)
10 3ey7_A Biphenyl-2,3-DIOL 1,2-d 11.3 93 0.0032 21.4 1.4 11 228-238 113-123 (133)
No 1
>2kd2_A FAS apoptotic inhibitory molecule 1; protein, beta sandwich, apoptosis; NMR {Mus musculus} PDB: 2kw1_A
Probab=39.36 E-value=12 Score=29.23 Aligned_cols=21 Identities=33% Similarity=0.691 Sum_probs=14.2
Q ss_pred CceeEEEeeccCCCcCcccccccceeeeeecCeee
Q 025615 135 GMVRIALECEKRPEKDKVKLLEEPLWSMFCNGKKT 169 (250)
Q Consensus 135 G~vRIaLEcek~~~~~~~~Ll~ep~WtmyCNGrK~ 169 (250)
---||+||-+.- ..||||+|+
T Consensus 22 ~~~RIvLeK~tm--------------dVwvNG~~i 42 (94)
T 2kd2_A 22 EDLRVVLEKDTM--------------DVWCNGQKM 42 (94)
T ss_dssp EEEEEEEETTTT--------------EEEESSSBC
T ss_pred CEEEEEEecCcE--------------EEEECCEEe
Confidence 357888884321 367999986
No 2
>2l6o_A Uncharacterized protein YP_926445.1; structural genomics, PSI-biology, protein structure initiati center for structural genomics, JCSG; NMR {Shewanella amazonensis}
Probab=19.78 E-value=55 Score=26.09 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=17.8
Q ss_pred cccceecCCCCC------CCCCCceeeeeec
Q 025615 193 MGGGVLPGNSDA------EGADGELAYIRAH 217 (250)
Q Consensus 193 mGAGVLP~~~~~------~~~dgEl~YMRA~ 217 (250)
||||-.|..... -.+|+||+|++-.
T Consensus 1 ~~~~~~~~~mi~WPailkl~gddELiYL~s~ 31 (114)
T 2l6o_A 1 MGAGQTPHPQLIWPALLKQQGCNELLPLRTN 31 (114)
T ss_dssp CCSSSCSCSSCCSSEEECCSSCCCCEEESSH
T ss_pred CCCCcccCcCccCCEEEecCCCceeEeecCH
Confidence 799988865311 1578999999854
No 3
>4gym_A Glyoxalase/bleomycin resistance protein/dioxygena; PSI-biology, midwest center for structural genomics, MCSG, oxidoreductase; HET: MSE; 1.56A {Conexibacter woesei}
Probab=17.81 E-value=47 Score=24.26 Aligned_cols=10 Identities=10% Similarity=0.109 Sum_probs=8.8
Q ss_pred eeeeecCCCC
Q 025615 229 TLYMLSPEGN 238 (250)
Q Consensus 229 sfyMinPdg~ 238 (250)
++|.-|||||
T Consensus 117 ~~~f~DPDGn 126 (149)
T 4gym_A 117 GRSFHDLDGH 126 (149)
T ss_dssp EEEEECTTCC
T ss_pred EEEEEcCCCC
Confidence 5899999997
No 4
>3rri_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=13.32 E-value=73 Score=22.44 Aligned_cols=10 Identities=30% Similarity=0.923 Sum_probs=9.1
Q ss_pred eeeeecCCCC
Q 025615 229 TLYMLSPEGN 238 (250)
Q Consensus 229 sfyMinPdg~ 238 (250)
+||+.|||||
T Consensus 112 ~~~~~DPdGn 121 (135)
T 3rri_A 112 TFFLIDPSNN 121 (135)
T ss_dssp EEEEECTTCC
T ss_pred EEEEECCCCC
Confidence 7899999997
No 5
>3sk2_A EHPR; antibiotic resistance, griseoluteate-binding protein; HET: GRI; 1.01A {Pantoea agglomerans} PDB: 3sk1_A*
Probab=12.41 E-value=80 Score=22.45 Aligned_cols=11 Identities=27% Similarity=0.724 Sum_probs=9.4
Q ss_pred ceeeeecCCCC
Q 025615 228 ETLYMLSPEGN 238 (250)
Q Consensus 228 EsfyMinPdg~ 238 (250)
..||+.|||||
T Consensus 114 ~~~~~~DPdGn 124 (132)
T 3sk2_A 114 RTFLISDPDGH 124 (132)
T ss_dssp EEEEEECTTCC
T ss_pred EEEEEECCCCC
Confidence 46899999987
No 6
>2it9_A Hypothetical protein; structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; HET: MSE PGE; 1.80A {Prochlorococcus marinus} SCOP: d.18.1.3
Probab=12.39 E-value=1.3e+02 Score=24.64 Aligned_cols=29 Identities=31% Similarity=0.533 Sum_probs=22.4
Q ss_pred ceeEEEeeccCCCcCcccccccceeeeeecCeeeeeeeecc
Q 025615 136 MVRIALECEKRPEKDKVKLLEEPLWSMFCNGKKTGYGVKRE 176 (250)
Q Consensus 136 ~vRIaLEcek~~~~~~~~Ll~ep~WtmyCNGrK~GyAvRRe 176 (250)
==+|+||-|+. .|-|-|+|.+-.|..|=-
T Consensus 63 EE~I~lE~E~~------------~~W~eleG~~~~~sLr~I 91 (127)
T 2it9_A 63 DEDITLELERR------------PWLAILNGDQYGWNLRLI 91 (127)
T ss_dssp TCEEEEEEEET------------TEEEEEEEETTEEEEEEE
T ss_pred hhheeeeecCc------------cEEEEeecccCeeEEEEE
Confidence 34888887754 377899999999998743
No 7
>3jyb_A Sensor protein; beta barrel, carbohydrate binding domain, signaling kinase, component system, RETS, kinase, phosphoprotein, transferase; 2.04A {Pseudomonas aeruginosa}
Probab=12.01 E-value=1.7e+02 Score=22.12 Aligned_cols=29 Identities=14% Similarity=-0.022 Sum_probs=21.3
Q ss_pred eecccCCceeeeeecCCCCCCeeEeeeccc
Q 025615 95 LFGYRKGKVSLSIQENPKCLPTVIVELAMQ 124 (250)
Q Consensus 95 lFG~RrGrV~~aiQedp~~~P~lllELa~p 124 (250)
=||+.++-+||.++-. ...-..+||+.-|
T Consensus 41 n~G~t~~~~Wlr~~l~-~~~~~~~L~i~~p 69 (145)
T 3jyb_A 41 IFPASPQAVWLQVQLP-AQKVPSWLWIFAP 69 (145)
T ss_dssp EECSCSCEEEEEEEEC-CCSSCEEEEEECT
T ss_pred ccCCCCCCEEEEEEEc-CCCcceEEEECCC
Confidence 3799999999999876 3334567777744
No 8
>2xbz_A RETS-hybrid sensor kinase; phosphoprotein, biofilm, transferase; 2.65A {Pseudomonas aeruginosa}
Probab=11.51 E-value=1.2e+02 Score=23.99 Aligned_cols=30 Identities=13% Similarity=0.060 Sum_probs=22.3
Q ss_pred eecccCCceeeeeecCCCCCCeeEeeeccch
Q 025615 95 LFGYRKGKVSLSIQENPKCLPTVIVELAMQT 125 (250)
Q Consensus 95 lFG~RrGrV~~aiQedp~~~P~lllELa~pT 125 (250)
-||+.++.+||.+.-..... .++||+.-|.
T Consensus 67 n~G~s~s~~Wlr~~L~n~~~-~~~L~i~~p~ 96 (171)
T 2xbz_A 67 IFPASPQAVWLQVQLPAQKV-PSWLWIFAPR 96 (171)
T ss_dssp EECSEEEEEEEEEEECCCSS-CEEEEEECTT
T ss_pred ccCCCCCCEEEEEEEEcCCC-ceEEEECCCC
Confidence 48999999999998653333 6778888553
No 9
>2nvn_A Hypothetical protein; structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 2.50A {Synechococcus elongatus} SCOP: d.18.1.3
Probab=11.46 E-value=1.3e+02 Score=24.39 Aligned_cols=26 Identities=23% Similarity=0.393 Sum_probs=20.2
Q ss_pred eeEEEeeccCCCcCcccccccceeeeeecCeeeeeeee
Q 025615 137 VRIALECEKRPEKDKVKLLEEPLWSMFCNGKKTGYGVK 174 (250)
Q Consensus 137 vRIaLEcek~~~~~~~~Ll~ep~WtmyCNGrK~GyAvR 174 (250)
=+|+||-|+. .|-|-|+|.+-.|..|
T Consensus 66 E~I~lE~E~~------------~~W~eleG~~~~~sLr 91 (122)
T 2nvn_A 66 ERLQIEAESA------------LLWLEAEGFADAYELR 91 (122)
T ss_dssp SCEEEEEECS------------SEEEEEEEETTEEEEE
T ss_pred hheeeeecCc------------cEEEEeecccCeeEEE
Confidence 3677776643 4778999999999987
No 10
>3ey7_A Biphenyl-2,3-DIOL 1,2-dioxygenase III-related protein; integron cassette protein mobIle metagenome structural genomics, oxidoreductase, PSI-2; HET: MSE; 1.60A {Vibrio cholerae} PDB: 3ey8_A*
Probab=11.33 E-value=93 Score=21.39 Aligned_cols=11 Identities=36% Similarity=0.963 Sum_probs=9.4
Q ss_pred ceeeeecCCCC
Q 025615 228 ETLYMLSPEGN 238 (250)
Q Consensus 228 EsfyMinPdg~ 238 (250)
..||+.|||||
T Consensus 113 ~~~~~~DPdG~ 123 (133)
T 3ey7_A 113 TSFYFRDPDGN 123 (133)
T ss_dssp EEEEEECTTCC
T ss_pred EEEEEECCCCC
Confidence 56899999986
Done!