BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025617
(250 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
pdb|1N10|B Chain B, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
Length = 241
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 112/246 (45%), Gaps = 32/246 (13%)
Query: 19 TAAQHEEWNSATATYTKETNGSIIIE--GACGYGDLHRATYGKYSAGLSTMLFNRGSTCG 76
TA ++W A +T+ + G+ + GACGY D+ + + + +T +F G CG
Sbjct: 12 TATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCG 71
Query: 77 ACFELRCVDHILWCRPGSPSVILTATDFCPPNYGLSSDYGGWCNFPKEHFEMSEAAFVEI 136
+CFE++C C G P V+ D P HF++S AF +
Sbjct: 72 SCFEIKCTKPEA-CS-GEPVVVHITDDNEEP-------------IAPYHFDLSGHAFGAM 116
Query: 137 AE-------RRADIVPVQYRRVKCERRGGLRFTV----SGSSHFYQVLVTNVGLDGEVIA 185
A+ R A + +Q+RRVKC+ G + T + ++ +LV V DG+V+A
Sbjct: 117 AKKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVA 176
Query: 186 VKVK-GSKTGWIPMARNWGQNWQSNV--NLTGQPLSFEVTTSNRKTLTSYNVAPANWQFG 242
V +K K WI + +WG W+ + LTG P + TT + +V P W+
Sbjct: 177 VDIKEKGKDKWIELKESWGAIWRIDTPDKLTG-PFTVRYTTEGGTKTEAEDVIPEGWKAD 235
Query: 243 QTYEGK 248
+YE K
Sbjct: 236 TSYESK 241
>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And
Group-1 Pollen Allergen From Maize
Length = 245
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 120/246 (48%), Gaps = 38/246 (15%)
Query: 19 TAAQHEEWNSATATYTKETNGSIIIE--GACGYGDLHRATYGKYSAGLSTMLFNRGSTCG 76
T + +W +A AT+ + NG+ + GACG +++ Y +A + +F G CG
Sbjct: 12 TTNYNGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCG 71
Query: 77 ACFELRCVDHILWCRP---GSPSVILTATDFCPPNYGLSSDYGGWCNFPKEHFEMSEAAF 133
+C+E+RC + +P G+P V + TD NY + Y HF++S AF
Sbjct: 72 SCYEVRCKE-----KPECSGNP-VTVYITDM---NYEPIAPY---------HFDLSGKAF 113
Query: 134 VEIAE-------RRADIVPVQYRRVKCERRGGLRFTV----SGSSHFYQVLVTNVGLDGE 182
+A+ R I+ V++RRV+C+ G + + ++ VLV V DG+
Sbjct: 114 GSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGD 173
Query: 183 VIAVKVKGSKTG-WIPMARNWGQNWQSNV--NLTGQPLSFEVTTSNRKTLTSYNVAPANW 239
++ ++++ + W PM +WG W+ + L G P S +T+ + K + + +V PANW
Sbjct: 174 IVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKG-PFSIRLTSESGKKVIAKDVIPANW 232
Query: 240 QFGQTY 245
+ Y
Sbjct: 233 RPDAVY 238
>pdb|2YI8|A Chain A, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI8|B Chain B, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI8|C Chain C, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI8|D Chain D, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI8|E Chain E, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI9|A Chain A, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YI9|B Chain B, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YI9|C Chain C, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YI9|D Chain D, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YI9|E Chain E, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YIA|A Chain A, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|B Chain B, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|C Chain C, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|D Chain D, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|E Chain E, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|F Chain F, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|G Chain G, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|H Chain H, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
Length = 799
Score = 27.7 bits (60), Expect = 6.7, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 5 QAIVFFLILLQTCKTAAQHEEWNSATATYTKETNGSIIIEGACGYGDLHRATYGKYSAGL 64
QA++++L L + +N AT+ S++++ +C +L TYG+ S
Sbjct: 416 QAMMYYL-LTRGWTNEDGSPRYNPTWATFAMNVAPSMVVDSSCLLMNLQLKTYGQGSGNA 474
Query: 65 STMLFN 70
T L N
Sbjct: 475 FTFLNN 480
>pdb|2YIB|D Chain D, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
Length = 770
Score = 27.7 bits (60), Expect = 6.7, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 5 QAIVFFLILLQTCKTAAQHEEWNSATATYTKETNGSIIIEGACGYGDLHRATYGKYSAGL 64
QA++++L L + +N AT+ S++++ +C +L TYG+ S
Sbjct: 416 QAMMYYL-LTRGWTNEDGSPRYNPTWATFAMNVAPSMVVDSSCLLMNLQLKTYGQGSGNA 474
Query: 65 STMLFN 70
T L N
Sbjct: 475 FTFLNN 480
>pdb|2YIB|A Chain A, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIB|B Chain B, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIB|C Chain C, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|3ZED|A Chain A, X-ray Structure Of The Birnavirus Vp1-vp3 Complex
pdb|3ZED|B Chain B, X-ray Structure Of The Birnavirus Vp1-vp3 Complex
pdb|3ZED|C Chain C, X-ray Structure Of The Birnavirus Vp1-vp3 Complex
Length = 853
Score = 27.7 bits (60), Expect = 6.7, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 5 QAIVFFLILLQTCKTAAQHEEWNSATATYTKETNGSIIIEGACGYGDLHRATYGKYSAGL 64
QA++++L L + +N AT+ S++++ +C +L TYG+ S
Sbjct: 416 QAMMYYL-LTRGWTNEDGSPRYNPTWATFAMNVAPSMVVDSSCLLMNLQLKTYGQGSGNA 474
Query: 65 STMLFN 70
T L N
Sbjct: 475 FTFLNN 480
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,047,258
Number of Sequences: 62578
Number of extensions: 331829
Number of successful extensions: 750
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 737
Number of HSP's gapped (non-prelim): 10
length of query: 250
length of database: 14,973,337
effective HSP length: 96
effective length of query: 154
effective length of database: 8,965,849
effective search space: 1380740746
effective search space used: 1380740746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)