Query 025617
Match_columns 250
No_of_seqs 143 out of 973
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:40:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025617.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025617hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00193 expansin-A; Provision 100.0 1.5E-72 3.3E-77 499.2 28.6 233 17-250 21-256 (256)
2 PLN00050 expansin A; Provision 100.0 1.2E-72 2.6E-77 498.0 26.8 226 23-250 22-247 (247)
3 PLN03023 Expansin-like B1; Pro 100.0 4E-65 8.7E-70 449.7 25.5 219 11-250 12-246 (247)
4 COG4305 Endoglucanase C-termin 100.0 1.1E-27 2.5E-32 199.1 19.3 199 8-239 12-217 (232)
5 PLN03024 Putative EG45-like do 100.0 1.4E-27 3.1E-32 191.6 13.7 100 27-150 22-125 (125)
6 smart00837 DPBB_1 Rare lipopro 99.9 4E-28 8.7E-33 183.7 8.4 87 61-148 1-87 (87)
7 PLN00115 pollen allergen group 99.9 9.1E-23 2E-27 162.0 11.0 91 152-250 21-118 (118)
8 PF01357 Pollen_allerg_1: Poll 99.9 1.2E-22 2.7E-27 152.1 9.8 77 159-236 1-82 (82)
9 PF03330 DPBB_1: Rare lipoprot 99.8 1.8E-19 4E-24 133.2 5.8 75 61-148 1-78 (78)
10 PF00967 Barwin: Barwin family 98.9 1.1E-09 2.4E-14 85.9 4.3 60 71-153 56-119 (119)
11 PF07249 Cerato-platanin: Cera 98.1 1.6E-05 3.5E-10 63.5 8.9 66 60-152 44-113 (119)
12 TIGR00413 rlpA rare lipoprotei 97.9 0.00015 3.2E-09 62.9 10.6 96 29-156 1-96 (208)
13 COG0797 RlpA Lipoproteins [Cel 97.4 0.00044 9.5E-09 61.0 7.3 59 76-154 120-178 (233)
14 PRK10672 rare lipoprotein A; P 97.0 0.0079 1.7E-07 56.4 11.3 92 28-151 80-171 (361)
15 PF02015 Glyco_hydro_45: Glyco 93.7 0.08 1.7E-06 45.9 3.8 54 61-131 70-123 (201)
16 cd02854 Glycogen_branching_enz 68.5 13 0.00028 28.4 5.0 48 183-230 16-76 (99)
17 PRK10564 maltose regulon perip 65.7 20 0.00043 33.2 6.4 76 146-250 48-127 (303)
18 TIGR02588 conserved hypothetic 58.8 81 0.0018 25.4 8.0 34 157-191 34-73 (122)
19 PF03404 Mo-co_dimer: Mo-co ox 57.1 15 0.00033 29.6 3.7 49 179-227 38-105 (131)
20 cd02110 SO_family_Moco_dimer S 48.0 35 0.00076 31.6 5.0 49 179-227 234-292 (317)
21 PRK13701 psiB plasmid SOS inhi 35.9 1.1E+02 0.0024 25.2 5.5 44 142-189 58-105 (144)
22 cd02114 bact_SorA_Moco sulfite 35.1 59 0.0013 30.8 4.5 49 179-227 286-344 (367)
23 cd02855 Glycogen_branching_enz 35.0 1.4E+02 0.003 22.0 5.8 34 196-229 49-85 (106)
24 cd02113 bact_SoxC_Moco bacteri 34.3 58 0.0013 30.4 4.2 50 178-227 235-293 (326)
25 PLN00177 sulfite oxidase; Prov 31.5 1.2E+02 0.0025 29.2 5.9 23 178-200 293-316 (393)
26 cd02861 E_set_proteins_like E 31.3 1.1E+02 0.0024 21.9 4.6 45 184-229 14-60 (82)
27 cd02111 eukary_SO_Moco molybdo 29.6 1.3E+02 0.0029 28.4 5.9 23 178-200 273-296 (365)
28 PRK15205 long polar fimbrial p 28.3 36 0.00078 28.4 1.7 45 1-50 1-46 (176)
29 PF08770 SoxZ: Sulphur oxidati 28.0 1E+02 0.0023 23.6 4.1 34 198-232 64-97 (100)
30 PF06290 PsiB: Plasmid SOS inh 27.8 1.9E+02 0.0041 23.9 5.6 45 141-189 57-105 (143)
31 PF09680 Tiny_TM_bacill: Prote 26.4 53 0.0011 18.9 1.6 10 6-15 8-17 (24)
32 PF10417 1-cysPrx_C: C-termina 26.1 37 0.00081 21.7 1.0 11 233-243 10-20 (40)
33 PF12863 DUF3821: Domain of un 25.7 3E+02 0.0066 24.1 7.0 94 124-231 48-146 (209)
34 PF07172 GRP: Glycine rich pro 24.9 41 0.00089 25.7 1.3 21 1-21 1-25 (95)
35 COG2372 CopC Uncharacterized p 23.4 1E+02 0.0023 24.9 3.4 28 138-165 96-126 (127)
36 PRK10301 hypothetical protein; 23.0 1.1E+02 0.0023 24.4 3.4 27 138-164 95-124 (124)
37 TIGR01913 bet_lambda phage rec 20.5 1.2E+02 0.0027 26.0 3.5 63 124-189 70-136 (188)
No 1
>PLN00193 expansin-A; Provisional
Probab=100.00 E-value=1.5e-72 Score=499.20 Aligned_cols=233 Identities=49% Similarity=0.948 Sum_probs=218.2
Q ss_pred hhccccCCCceEEEEEEeCCCCCCCCCcCccCCCCCCCCCCCceEEEechhccCCCccCcceEEEEEc--CCCcccCCCC
Q 025617 17 CKTAAQHEEWNSATATYTKETNGSIIIEGACGYGDLHRATYGKYSAGLSTMLFNRGSTCGACFELRCV--DHILWCRPGS 94 (250)
Q Consensus 17 ~~~~~~~~~~~~g~aT~Yg~~~g~~~~~GACGyg~~~~~~~g~~~aA~s~~~~~~g~~CG~C~eV~c~--~~~~~C~~g~ 94 (250)
.......++|++++|||||++|+.++++|||||+++...+++.++||+|++||++|++||+||||+|. ..+.+|.++
T Consensus 21 ~~~~~~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g- 99 (256)
T PLN00193 21 NVNAFTPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKG- 99 (256)
T ss_pred hccCcCCCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCC-
Confidence 33334555899999999999999999999999999888899999999999999999999999999995 245689876
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHHhcccCCeeceEEEEEEeccCCceeEEEcCCcceEEEEE
Q 025617 95 PSVILTATDFCPPNYGLSSDYGGWCNFPKEHFEMSEAAFVEIAERRADIVPVQYRRVKCERRGGLRFTVSGSSHFYQVLV 174 (250)
Q Consensus 95 ~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~C~~~g~i~~~v~~~~yw~~v~v 174 (250)
++|+|+|||+||.++.+|+++++||.+++.|||||.+||.+||.+..|+|+|+||||+|+++|+|+|++++++||++|+|
T Consensus 100 ~sV~Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~~~~Giv~V~yrRVpC~~~G~i~f~v~gn~y~~~vlv 179 (256)
T PLN00193 100 ASVTITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFTINGRDYFELVLI 179 (256)
T ss_pred CeEEEEEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhhhcCCeEeEEEEEeccccCCCcEEEEcCCccEEEEEE
Confidence 49999999999999999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcceEEEEEEecCCceeecccccCceEEeCCCCCCcceEEEEEecCCcEEEEccccCCCCcCCcEEec-cCC
Q 025617 175 TNVGLDGEVIAVKVKGSKTGWIPMARNWGQNWQSNVNLTGQPLSFEVTTSNRKTLTSYNVAPANWQFGQTYEG-KQF 250 (250)
Q Consensus 175 ~n~~g~~~I~sVeI~~~~~~W~~m~r~~g~~W~~~~~l~g~P~~vrvts~~G~~vv~~~viP~~w~~G~~y~~-~~~ 250 (250)
.|++|+++|++|+||+++++|++|+|+||++|+.+.+|.++||+||||+.+|+++++.||||++|++|.||++ +||
T Consensus 180 ~nv~G~gdV~~v~Ik~~~~~W~~M~R~wGa~W~~~~~l~g~plsfRvts~~G~~~~~~~viPa~W~~G~ty~s~vqf 256 (256)
T PLN00193 180 SNVGGAGSIQSVSIKGSKTGWMAMSRNWGANWQSNAYLDGQSLSFKVTTTDGQTRFFLNVVPANWGFGQTFSSSVQF 256 (256)
T ss_pred EEeCCCccEEEEEEecCCCCeeECcccccceeEecCCCCCCCEEEEEEEcCCeEEEECceeCCCCCCCCeEecCccC
Confidence 9999999999999999877899999999999999888888899999999999999999999999999999977 698
No 2
>PLN00050 expansin A; Provisional
Probab=100.00 E-value=1.2e-72 Score=497.98 Aligned_cols=226 Identities=56% Similarity=1.077 Sum_probs=216.7
Q ss_pred CCCceEEEEEEeCCCCCCCCCcCccCCCCCCCCCCCceEEEechhccCCCccCcceEEEEEcCCCcccCCCCCeEEEEEe
Q 025617 23 HEEWNSATATYTKETNGSIIIEGACGYGDLHRATYGKYSAGLSTMLFNRGSTCGACFELRCVDHILWCRPGSPSVILTAT 102 (250)
Q Consensus 23 ~~~~~~g~aT~Yg~~~g~~~~~GACGyg~~~~~~~g~~~aA~s~~~~~~g~~CG~C~eV~c~~~~~~C~~g~~sv~v~V~ 102 (250)
..+|..++|||||++|+.++++|||||+++..++++.++||+|++||++|++||+||||+|.+.+.+|.++ +|+|+||
T Consensus 22 ~~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~~~~C~~g--sV~V~it 99 (247)
T PLN00050 22 GSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDNIWCLPG--SIIITAT 99 (247)
T ss_pred CCCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEEEEcCCCCcccCCC--cEEEEEe
Confidence 45899999999999999999999999999888899999999999999999999999999998777789887 8999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHHhcccCCeeceEEEEEEeccCCceeEEEcCCcceEEEEEEEecCCcc
Q 025617 103 DFCPPNYGLSSDYGGWCNFPKEHFEMSEAAFVEIAERRADIVPVQYRRVKCERRGGLRFTVSGSSHFYQVLVTNVGLDGE 182 (250)
Q Consensus 103 D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~C~~~g~i~~~v~~~~yw~~v~v~n~~g~~~ 182 (250)
|+||.++.+|+++++||.+++.|||||.+||.+||.+..|+|+|+||||+|+++|+|+|++++++||++++|.|++|.++
T Consensus 100 d~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~~~aGii~V~yRRVpC~~~G~i~f~v~g~sy~~~vlv~nv~G~gd 179 (247)
T PLN00050 100 NFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGIVPVQYRRVACRKSGGIRFTINGHSYFNLVLITNVGGAGD 179 (247)
T ss_pred cCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhhhcCCeeeeEEEEecCcCCCCeEEEEcCCceeEEEEEEEcCCCcc
Confidence 99999999999999999988999999999999999999999999999999999999999999989999999999999999
Q ss_pred eEEEEEEecCCceeecccccCceEEeCCCCCCcceEEEEEecCCcEEEEccccCCCCcCCcEEeccCC
Q 025617 183 VIAVKVKGSKTGWIPMARNWGQNWQSNVNLTGQPLSFEVTTSNRKTLTSYNVAPANWQFGQTYEGKQF 250 (250)
Q Consensus 183 I~sVeI~~~~~~W~~m~r~~g~~W~~~~~l~g~P~~vrvts~~G~~vv~~~viP~~w~~G~~y~~~~~ 250 (250)
|++|+|++++++|++|+|+||++|+.+.+|.++||+||||+.+|+++++.||||++|++|.+|++.||
T Consensus 180 i~~V~ikg~~~~W~~M~R~wGa~W~~~~~l~g~~lsfRvt~~~G~~~~~~~V~Pa~W~~G~ty~~~~f 247 (247)
T PLN00050 180 IVAVSIKGSKSNWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFGQTYTGMQF 247 (247)
T ss_pred EEEEEEecCCCCeeECccccCceeEccCCCCCCcEEEEEEecCCcEEEECceeCCCCCCCCeEecCcC
Confidence 99999999877899999999999999887888899999999999999999999999999999999998
No 3
>PLN03023 Expansin-like B1; Provisional
Probab=100.00 E-value=4e-65 Score=449.74 Aligned_cols=219 Identities=27% Similarity=0.541 Sum_probs=192.9
Q ss_pred HHHHhhhhccccCCCceEEEEEEeCCCCCCCCCcCccCCCCCCCCCCCceEEEechhccCCCccCcceEEEEEcCCCccc
Q 025617 11 LILLQTCKTAAQHEEWNSATATYTKETNGSIIIEGACGYGDLHRATYGKYSAGLSTMLFNRGSTCGACFELRCVDHILWC 90 (250)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~g~aT~Yg~~~g~~~~~GACGyg~~~~~~~g~~~aA~s~~~~~~g~~CG~C~eV~c~~~~~~C 90 (250)
+++++ +.+.+|. +|++++|||||++|+.|+++|||||+++..+.++.++||+| +||++|++||+||||+|.+ +.+|
T Consensus 12 ~~~~~-~~~~~~~-~W~~a~AT~Yg~~~g~gt~gGACGYg~~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~~-~~~C 87 (247)
T PLN03023 12 VIVLL-PLLCKSQ-DFTYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKA-PNLC 87 (247)
T ss_pred HHHHh-hhhhhcC-CcccceEEEeCCCCCCCCCCccccCCccccCCCcceeeeeh-hhhcCCchhcccEEeecCC-CCcc
Confidence 33344 4444444 49999999999999999999999999988888899999999 9999999999999999976 5689
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHHhc-------ccCCeeceEEEEEEeccCC-ceeEE
Q 025617 91 RPGSPSVILTATDFCPPNYGLSSDYGGWCNFPKEHFEMSEAAFVEIAE-------RRADIVPVQYRRVKCERRG-GLRFT 162 (250)
Q Consensus 91 ~~g~~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~-------~~~G~v~i~~r~V~C~~~g-~i~~~ 162 (250)
+++ +|+|+|||.||. ++.|||||.+||.+||. +.+|+|+|+||||+|.++| +|+|+
T Consensus 88 ~~~--~v~V~iTd~~~~--------------~~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~~~G~~i~F~ 151 (247)
T PLN03023 88 SDD--GVNVVVTDYGEG--------------DKTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLFFK 151 (247)
T ss_pred CCC--CeEEEEEeCCCC--------------CCCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecccCCCceEEE
Confidence 987 899999999983 25899999999999998 5679999999999999999 99999
Q ss_pred EcC---CcceEEEEEEEecCCcceEEEEEEec-CCceeecccccCceEEeCCCCCCcceEEEE--EecCCcE-EEEcccc
Q 025617 163 VSG---SSHFYQVLVTNVGLDGEVIAVKVKGS-KTGWIPMARNWGQNWQSNVNLTGQPLSFEV--TTSNRKT-LTSYNVA 235 (250)
Q Consensus 163 v~~---~~yw~~v~v~n~~g~~~I~sVeI~~~-~~~W~~m~r~~g~~W~~~~~l~g~P~~vrv--ts~~G~~-vv~~~vi 235 (250)
|++ ++||++|+|.|++|+++|++||||++ +++|++|+|+||++|+.+.+|++ ||+||+ ++.+|++ |+++|||
T Consensus 152 V~~~s~~p~yl~vlv~~vgG~GdI~~V~Ik~~~~~~W~~M~rnwGa~W~~~~~l~G-p~slrf~v~~~~g~~~vva~nVi 230 (247)
T PLN03023 152 VHEHSRFPDYLAIVMLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAVWDMPNPPKG-PITLRFQVSGSAGQTWVQAKNVI 230 (247)
T ss_pred EecCCCCCceEEEEEEEcCCCccEEEEEEEecCCCCceECccCCcceeEcCCCCCC-ceeEEEEEEeCCCcEEEEECcee
Confidence 986 37799999999999999999999996 46899999999999999888998 655555 4557755 8999999
Q ss_pred CCCCcCCcEEec-cCC
Q 025617 236 PANWQFGQTYEG-KQF 250 (250)
Q Consensus 236 P~~w~~G~~y~~-~~~ 250 (250)
|++|++|.||++ +||
T Consensus 231 Pa~Wk~G~TY~s~vq~ 246 (247)
T PLN03023 231 PSDWKAGVAYDSNIQL 246 (247)
T ss_pred CCCCCCCCEEeccccc
Confidence 999999999955 787
No 4
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.1e-27 Score=199.08 Aligned_cols=199 Identities=21% Similarity=0.296 Sum_probs=167.5
Q ss_pred HHHHHHHhhhhccccCCCceEEEEEEeCCCCCCCCCcCccCCCCCCCCCCCceEEEechhccCCC----ccCcceEEEEE
Q 025617 8 VFFLILLQTCKTAAQHEEWNSATATYTKETNGSIIIEGACGYGDLHRATYGKYSAGLSTMLFNRG----STCGACFELRC 83 (250)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~g~aT~Yg~~~g~~~~~GACGyg~~~~~~~g~~~aA~s~~~~~~g----~~CG~C~eV~c 83 (250)
+++.+.++++..++.-++-+.|.|||-|.. ..+||--.... +-+..+.|+++..-|-| +.-|+.++|..
T Consensus 12 v~~~~~~~s~q~s~awd~~f~G~ATyTgsG----YsGGAflLDPI---~sd~eITAlNPaqlNlGGipAAmAGaYLrVqG 84 (232)
T COG4305 12 VLLTIFCFSPQASAAWDDLFEGYATYTGSG----YSGGAFLLDPI---PSDMEITALNPAQLNLGGIPAAMAGAYLRVQG 84 (232)
T ss_pred hhhhhhccCCCcccccccccceeEEEeccc----ccCceEEecCc---CCcceeeecCHHHcccCCchhhhccceEEEEC
Confidence 456788888888888888899999998763 46788766543 34567899999888765 77999999985
Q ss_pred cCCCcccCCCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHHhcccCCeeceEEEEEEeccCCceeEEE
Q 025617 84 VDHILWCRPGSPSVILTATDFCPPNYGLSSDYGGWCNFPKEHFEMSEAAFVEIAERRADIVPVQYRRVKCERRGGLRFTV 163 (250)
Q Consensus 84 ~~~~~~C~~g~~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~C~~~g~i~~~v 163 (250)
|. | +.+|.|||+-|.+ .++.+|||++||.+|++..+|+|+|+||.|+-|..||+.+++
T Consensus 85 ---PK----G--~TTVYVTDlYPeg-------------asGaLDLSpNAFakIGnm~qGrIpvqWrvv~aPvtGN~~YRi 142 (232)
T COG4305 85 ---PK----G--KTTVYVTDLYPEG-------------ASGALDLSPNAFAKIGNMKQGRIPVQWRVVKAPVTGNFTYRI 142 (232)
T ss_pred ---CC----C--ceEEEEecccccc-------------cccccccChHHHhhhcchhcCccceeEEEecccccccEEEEE
Confidence 43 4 8899999999953 257899999999999999999999999999999999999999
Q ss_pred cC--CcceEEEEEEEecCCcceEEEEEEecCCceeecccccCceEEeCCCCCCcceEEEEEecCCcEEEEc-cccCCCC
Q 025617 164 SG--SSHFYQVLVTNVGLDGEVIAVKVKGSKTGWIPMARNWGQNWQSNVNLTGQPLSFEVTTSNRKTLTSY-NVAPANW 239 (250)
Q Consensus 164 ~~--~~yw~~v~v~n~~g~~~I~sVeI~~~~~~W~~m~r~~g~~W~~~~~l~g~P~~vrvts~~G~~vv~~-~viP~~w 239 (250)
|+ +.||.++||+||. .+|.++|+... +.|+.|.+.+||+|...+ |..+||.+|+|++-|+.++.. -.+|..-
T Consensus 143 KeGSs~WWAAIQVRnH~--yPV~KlE~~qd-g~WinlpK~dYNhFVgT~-LG~~pL~~RmTDIRG~~l~DtlP~Lpk~a 217 (232)
T COG4305 143 KEGSSRWWAAIQVRNHK--YPVMKLEYEQD-GKWINLPKMDYNHFVGTN-LGTGPLKVRMTDIRGKVLKDTLPKLPKSA 217 (232)
T ss_pred ecCCccceeeeeeeccc--CceEEEEEecC-CeEeeccccccceeeccc-cCCCceEEEEeecccceeecccccccccc
Confidence 86 8899999999998 99999999974 789999999999998654 444599999999999988755 3555433
No 5
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.95 E-value=1.4e-27 Score=191.61 Aligned_cols=100 Identities=30% Similarity=0.582 Sum_probs=84.8
Q ss_pred eEEEEEEeCCCCCCCCCcCccCCCCCCCCCCCceEEEechhccCCCccCcceEEEEEcCC----CcccCCCCCeEEEEEe
Q 025617 27 NSATATYTKETNGSIIIEGACGYGDLHRATYGKYSAGLSTMLFNRGSTCGACFELRCVDH----ILWCRPGSPSVILTAT 102 (250)
Q Consensus 27 ~~g~aT~Yg~~~g~~~~~GACGyg~~~~~~~g~~~aA~s~~~~~~g~~CG~C~eV~c~~~----~~~C~~g~~sv~v~V~ 102 (250)
..|+||||+++ ..||| |++ .+++.++||+|+.+|++|+.||+||||+|.+. +.+|.++ +|+|+|+
T Consensus 22 ~~G~AT~Y~~~-----~~gAC-~~~---~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~~~c~gk--sV~V~Vt 90 (125)
T PLN03024 22 TPGIATFYTSY-----TPSAC-YRG---TSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVPHPCTGK--SVTVKIV 90 (125)
T ss_pred cceEEEEeCCC-----CCccc-cCC---CCCCCEeEEeCHHHcCCCcccCceEEEEECCCCccccccccCC--eEEEEEE
Confidence 45999999874 35899 544 24688999999999999999999999999653 2468654 9999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHHhcccCCeeceEEEE
Q 025617 103 DFCPPNYGLSSDYGGWCNFPKEHFEMSEAAFVEIAERRADIVPVQYRR 150 (250)
Q Consensus 103 D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~ 150 (250)
|+||. .|. .|||||++||++||+++.|+|+|+|.+
T Consensus 91 D~CP~----------~C~---~~~DLS~~AF~~iA~~~aG~v~V~y~~ 125 (125)
T PLN03024 91 DHCPS----------GCA---STLDLSREAFAQIANPVAGIINIDYIP 125 (125)
T ss_pred cCCCC----------CCC---CceEcCHHHHHHhcCccCCEEEEEEeC
Confidence 99994 275 599999999999999999999999974
No 6
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.95 E-value=4e-28 Score=183.65 Aligned_cols=87 Identities=60% Similarity=1.253 Sum_probs=81.4
Q ss_pred EEEechhccCCCccCcceEEEEEcCCCcccCCCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHHhccc
Q 025617 61 SAGLSTMLFNRGSTCGACFELRCVDHILWCRPGSPSVILTATDFCPPNYGLSSDYGGWCNFPKEHFEMSEAAFVEIAERR 140 (250)
Q Consensus 61 ~aA~s~~~~~~g~~CG~C~eV~c~~~~~~C~~g~~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~ 140 (250)
+||+|++||++|++||+||||+|.+.+.+|.++ ++|+|+|||+||.++..|+++++||.+++.|||||.+||.+||.+.
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~-~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~~~ 79 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPG-GSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQYK 79 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCCCCCcccCC-CeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhhhc
Confidence 489999999999999999999997667789886 4999999999999988899999999988999999999999999999
Q ss_pred CCeeceEE
Q 025617 141 ADIVPVQY 148 (250)
Q Consensus 141 ~G~v~i~~ 148 (250)
.|+|+|+|
T Consensus 80 ~Gvi~v~y 87 (87)
T smart00837 80 AGIVPVKY 87 (87)
T ss_pred CCEEeeEC
Confidence 99999987
No 7
>PLN00115 pollen allergen group 3; Provisional
Probab=99.89 E-value=9.1e-23 Score=162.01 Aligned_cols=91 Identities=21% Similarity=0.407 Sum_probs=79.5
Q ss_pred EeccCCceeEEEcC--CcceEEEEEEEecCCcceEEEEEEecC-Ccee-ecccccCceEEeCC--CCCCcceEEEEEecC
Q 025617 152 KCERRGGLRFTVSG--SSHFYQVLVTNVGLDGEVIAVKVKGSK-TGWI-PMARNWGQNWQSNV--NLTGQPLSFEVTTSN 225 (250)
Q Consensus 152 ~C~~~g~i~~~v~~--~~yw~~v~v~n~~g~~~I~sVeI~~~~-~~W~-~m~r~~g~~W~~~~--~l~g~P~~vrvts~~ 225 (250)
.|. -+|+|+|++ |++||.+++ | ++|.+||||+++ .+|+ +|+|+||++|+.++ +|+| ||+||+|+.+
T Consensus 21 ~~g--~~v~F~V~~gSnp~yL~ll~-~----~dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~~pl~G-PlS~R~t~~~ 92 (118)
T PLN00115 21 SCA--TEVTFKVGKGSSSTSLELVT-N----VAISEVEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKG-PFSVRFLVKG 92 (118)
T ss_pred hcC--CceEEEECCCCCcceEEEEE-e----CCEEEEEEeecCCCcccCccccCccceeEecCCCCCCC-ceEEEEEEeC
Confidence 455 389999986 699997766 3 469999999984 5799 99999999999753 7888 9999999999
Q ss_pred CcEEEEccccCCCCcCCcEEec-cCC
Q 025617 226 RKTLTSYNVAPANWQFGQTYEG-KQF 250 (250)
Q Consensus 226 G~~vv~~~viP~~w~~G~~y~~-~~~ 250 (250)
|++++++||||++|++|.+|++ +||
T Consensus 93 G~~~va~nViPa~Wk~G~tY~s~vq~ 118 (118)
T PLN00115 93 GGYRVVDDVIPESFKAGSVYKTGIQV 118 (118)
T ss_pred CCEEEECceECCCCCCCCEEeccccC
Confidence 9999999999999999999965 787
No 8
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=99.88 E-value=1.2e-22 Score=152.14 Aligned_cols=77 Identities=49% Similarity=0.856 Sum_probs=64.7
Q ss_pred eeEEEcC--CcceEEEEEEEecCCcceEEEEEEecC-CceeecccccCceEEeC-CCCCCcceEEEEEecC-CcEEEEcc
Q 025617 159 LRFTVSG--SSHFYQVLVTNVGLDGEVIAVKVKGSK-TGWIPMARNWGQNWQSN-VNLTGQPLSFEVTTSN-RKTLTSYN 233 (250)
Q Consensus 159 i~~~v~~--~~yw~~v~v~n~~g~~~I~sVeI~~~~-~~W~~m~r~~g~~W~~~-~~l~g~P~~vrvts~~-G~~vv~~~ 233 (250)
|+|+|++ ++|||+|+|.|++|.++|++|||++++ .+|++|+|+||++|+.+ +++++ ||+||||+.+ |++++++|
T Consensus 1 v~f~V~~gS~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~~~~~~-pls~Rvts~~~G~~vv~~n 79 (82)
T PF01357_consen 1 VRFTVKGGSNPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDSNPPGG-PLSFRVTSGDSGQTVVADN 79 (82)
T ss_dssp EEEEE-TT-BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE-SS--S-SEEEEEEETTTSEEEEEEE
T ss_pred CEEEECCCCCCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECCCCcCC-CEEEEEEEcCCCeEEEEec
Confidence 6899987 599999999999999999999999885 46999999999999987 56666 9999999977 99999999
Q ss_pred ccC
Q 025617 234 VAP 236 (250)
Q Consensus 234 viP 236 (250)
|||
T Consensus 80 ViP 82 (82)
T PF01357_consen 80 VIP 82 (82)
T ss_dssp EE-
T ss_pred ccC
Confidence 998
No 9
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.78 E-value=1.8e-19 Score=133.23 Aligned_cols=75 Identities=33% Similarity=0.790 Sum_probs=60.5
Q ss_pred EEEechhccCCCccCcceEEEEEcCC-Cc--ccCCCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHHh
Q 025617 61 SAGLSTMLFNRGSTCGACFELRCVDH-IL--WCRPGSPSVILTATDFCPPNYGLSSDYGGWCNFPKEHFEMSEAAFVEIA 137 (250)
Q Consensus 61 ~aA~s~~~~~~g~~CG~C~eV~c~~~-~~--~C~~g~~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia 137 (250)
+||++..+|++|.+||+||+++|... .. +|..++++|+|+|+|+||. |. ..|||||+.||++|+
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~-----------~~--~~~lDLS~~aF~~la 67 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPG-----------CP--PNHLDLSPAAFKALA 67 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TT-----------SS--SSEEEEEHHHHHHTB
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCC-----------Cc--CCEEEeCHHHHHHhC
Confidence 68999999999999999999999322 11 2665226999999999994 76 589999999999999
Q ss_pred cccCCeeceEE
Q 025617 138 ERRADIVPVQY 148 (250)
Q Consensus 138 ~~~~G~v~i~~ 148 (250)
.++.|+++|+|
T Consensus 68 ~~~~G~i~V~w 78 (78)
T PF03330_consen 68 DPDAGVIPVEW 78 (78)
T ss_dssp STTCSSEEEEE
T ss_pred CCCceEEEEEC
Confidence 99999999998
No 10
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=98.92 E-value=1.1e-09 Score=85.87 Aligned_cols=60 Identities=20% Similarity=0.466 Sum_probs=44.0
Q ss_pred CCccCcceEEEEEcCCCcccCCCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHHhc----ccCCeece
Q 025617 71 RGSTCGACFELRCVDHILWCRPGSPSVILTATDFCPPNYGLSSDYGGWCNFPKEHFEMSEAAFVEIAE----RRADIVPV 146 (250)
Q Consensus 71 ~g~~CG~C~eV~c~~~~~~C~~g~~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~----~~~G~v~i 146 (250)
....||+|++|+.+.. +++++|+|+|+|+. .+|||++.+|++|-. ...|.+.|
T Consensus 56 gq~~CGkClrVTNt~t-------ga~~~~RIVDqCsn----------------GGLDld~~vF~~iDtdG~G~~~Ghl~V 112 (119)
T PF00967_consen 56 GQDSCGKCLRVTNTAT-------GAQVTVRIVDQCSN----------------GGLDLDPTVFNQIDTDGQGYAQGHLIV 112 (119)
T ss_dssp SGGGTT-EEEEE-TTT---------EEEEEEEEE-SS----------------SSEES-SSSHHHH-SSSHHHHHTEEEE
T ss_pred CcccccceEEEEecCC-------CcEEEEEEEEcCCC----------------CCcccChhHHhhhccCCcccccceEEE
Confidence 4578999999996542 46999999999983 489999999999953 46799999
Q ss_pred EEEEEEe
Q 025617 147 QYRRVKC 153 (250)
Q Consensus 147 ~~r~V~C 153 (250)
.|++|+|
T Consensus 113 ~y~fV~C 119 (119)
T PF00967_consen 113 DYEFVDC 119 (119)
T ss_dssp EEEEE--
T ss_pred EEEEEcC
Confidence 9999998
No 11
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.15 E-value=1.6e-05 Score=63.50 Aligned_cols=66 Identities=24% Similarity=0.452 Sum_probs=47.1
Q ss_pred eEEEech-hccCCCccCcceEEEEEcCCCcccCCCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHHhc
Q 025617 60 YSAGLST-MLFNRGSTCGACFELRCVDHILWCRPGSPSVILTATDFCPPNYGLSSDYGGWCNFPKEHFEMSEAAFVEIAE 138 (250)
Q Consensus 60 ~~aA~s~-~~~~~g~~CG~C~eV~c~~~~~~C~~g~~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~ 138 (250)
++.+... +-|+ ...||.|+|++-. +++|.|..+|.-+ ..|+|+.+||+.|.+
T Consensus 44 ~IGg~~~V~gWn-S~~CGtC~~lty~---------g~si~vlaID~a~-----------------~gfnis~~A~n~LT~ 96 (119)
T PF07249_consen 44 YIGGAPAVAGWN-SPNCGTCWKLTYN---------GRSIYVLAIDHAG-----------------GGFNISLDAMNDLTN 96 (119)
T ss_dssp SEEEETT--STT--TTTT-EEEEEET---------TEEEEEEEEEE-S-----------------SSEEE-HHHHHHHHT
T ss_pred eeccccccccCC-CCCCCCeEEEEEC---------CeEEEEEEEecCC-----------------CcccchHHHHHHhcC
Confidence 4555555 4464 5799999999972 3599999999954 369999999999986
Q ss_pred ---ccCCeeceEEEEEE
Q 025617 139 ---RRADIVPVQYRRVK 152 (250)
Q Consensus 139 ---~~~G~v~i~~r~V~ 152 (250)
...|+|+++|++|+
T Consensus 97 g~a~~lG~V~a~~~qV~ 113 (119)
T PF07249_consen 97 GQAVELGRVDATYTQVD 113 (119)
T ss_dssp S-CCCC-EEE-EEEEE-
T ss_pred CcccceeEEEEEEEEcC
Confidence 46699999999996
No 12
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=97.87 E-value=0.00015 Score=62.94 Aligned_cols=96 Identities=17% Similarity=0.106 Sum_probs=69.0
Q ss_pred EEEEEeCCCCCCCCCcCccCCCCCCCCCCCceEEEechhccCCCccCcceEEEEEcCCCcccCCCCCeEEEEEecCCCCC
Q 025617 29 ATATYTKETNGSIIIEGACGYGDLHRATYGKYSAGLSTMLFNRGSTCGACFELRCVDHILWCRPGSPSVILTATDFCPPN 108 (250)
Q Consensus 29 g~aT~Yg~~~g~~~~~GACGyg~~~~~~~g~~~aA~s~~~~~~g~~CG~C~eV~c~~~~~~C~~g~~sv~v~V~D~Cp~~ 108 (250)
|.|+|||..-. | ...|.|=. +. ...|+||-.+ ...|...+|+...+ +++|+|+|.|++|..
T Consensus 1 G~ASwYg~~f~-G-~~TAnGe~--y~--~~~~tAAHkt------LPlgT~V~VtNl~n-------grsviVrVnDRGPf~ 61 (208)
T TIGR00413 1 GLASWYGPKFH-G-RKTANGEV--YN--MKALTAAHKT------LPFNTYVKVTNLHN-------NRSVIVRINDRGPFS 61 (208)
T ss_pred CEEeEeCCCCC-C-CcCCCCee--cC--CCcccccccc------CCCCCEEEEEECCC-------CCEEEEEEeCCCCCC
Confidence 67999986311 0 22344321 11 1235665543 36889999997653 479999999999952
Q ss_pred CCCCCCCCCCCCCCCCceeeCHHHHHHHhcccCCeeceEEEEEEeccC
Q 025617 109 YGLSSDYGGWCNFPKEHFEMSEAAFVEIAERRADIVPVQYRRVKCERR 156 (250)
Q Consensus 109 ~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~C~~~ 156 (250)
+..-+|||..|+.+|+-...|+.+|+.+.+.....
T Consensus 62 -------------~gRiIDLS~aAA~~Lg~~~~G~a~V~vevl~~~~~ 96 (208)
T TIGR00413 62 -------------DDRIIDLSHAAAREIGLISRGVGQVRIEVLHVAKN 96 (208)
T ss_pred -------------CCCEEECCHHHHHHcCCCcCceEEEEEEEEecCCC
Confidence 23589999999999999999999999999987653
No 13
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=97.44 E-value=0.00044 Score=61.03 Aligned_cols=59 Identities=17% Similarity=0.187 Sum_probs=49.7
Q ss_pred cceEEEEEcCCCcccCCCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHHhcccCCeeceEEEEEEec
Q 025617 76 GACFELRCVDHILWCRPGSPSVILTATDFCPPNYGLSSDYGGWCNFPKEHFEMSEAAFVEIAERRADIVPVQYRRVKCE 154 (250)
Q Consensus 76 G~C~eV~c~~~~~~C~~g~~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~C~ 154 (250)
|.-.+|+..++ +++|+|+|.|++|. .. ...||||..|+++|+-...|+.+|+.+.+.+.
T Consensus 120 ~t~v~VtNl~N-------grsvvVRINDRGPf------------~~-gRiIDlS~aAA~~l~~~~~G~a~V~i~~l~~~ 178 (233)
T COG0797 120 PTYVRVTNLDN-------GRSVVVRINDRGPF------------VS-GRIIDLSKAAADKLGMIRSGVAKVRIEVLGVA 178 (233)
T ss_pred CCEEEEEEccC-------CcEEEEEEeCCCCC------------CC-CcEeEcCHHHHHHhCCccCceEEEEEEEeccc
Confidence 55678886653 47999999999994 33 35899999999999999999999999999866
No 14
>PRK10672 rare lipoprotein A; Provisional
Probab=97.02 E-value=0.0079 Score=56.43 Aligned_cols=92 Identities=16% Similarity=0.125 Sum_probs=60.0
Q ss_pred EEEEEEeCCCCCCCCCcCccCCCCCCCCCCCceEEEechhccCCCccCcceEEEEEcCCCcccCCCCCeEEEEEecCCCC
Q 025617 28 SATATYTKETNGSIIIEGACGYGDLHRATYGKYSAGLSTMLFNRGSTCGACFELRCVDHILWCRPGSPSVILTATDFCPP 107 (250)
Q Consensus 28 ~g~aT~Yg~~~g~~~~~GACGyg~~~~~~~g~~~aA~s~~~~~~g~~CG~C~eV~c~~~~~~C~~g~~sv~v~V~D~Cp~ 107 (250)
.|.|+|||..... ...|.|= .++ ...|+||-.+ .--|...+|+..++ +++|+|+|.|++|.
T Consensus 80 ~G~ASwYg~~f~G--~~TA~Ge--~~~--~~~~tAAH~t------LPlps~vrVtNl~n-------grsvvVrVnDRGP~ 140 (361)
T PRK10672 80 AGLAAIYDAEAGS--NLTASGE--RFD--PNALTAAHPT------LPIPSYVRVTNLAN-------GRMIVVRINDRGPY 140 (361)
T ss_pred EEEEEEeCCccCC--CcCcCce--eec--CCcCeeeccC------CCCCCEEEEEECCC-------CcEEEEEEeCCCCC
Confidence 4888888863210 1122221 111 1235655543 35678889997654 47999999999995
Q ss_pred CCCCCCCCCCCCCCCCCceeeCHHHHHHHhcccCCeeceEEEEE
Q 025617 108 NYGLSSDYGGWCNFPKEHFEMSEAAFVEIAERRADIVPVQYRRV 151 (250)
Q Consensus 108 ~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V 151 (250)
. +..-+|||..|+++|+-...+.|.|+.-.|
T Consensus 141 ~-------------~gRiiDLS~aAA~~Lg~~~~~~V~ve~i~v 171 (361)
T PRK10672 141 G-------------PGRVIDLSRAAADRLNTSNNTKVRIDPIIV 171 (361)
T ss_pred C-------------CCCeeEcCHHHHHHhCCCCCceEEEEEEee
Confidence 2 235899999999999876666666666555
No 15
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=93.68 E-value=0.08 Score=45.92 Aligned_cols=54 Identities=24% Similarity=0.289 Sum_probs=32.6
Q ss_pred EEEechhccCCCccCcceEEEEEcCCCcccCCCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHH
Q 025617 61 SAGLSTMLFNRGSTCGACFELRCVDHILWCRPGSPSVILTATDFCPPNYGLSSDYGGWCNFPKEHFEMSEA 131 (250)
Q Consensus 61 ~aA~s~~~~~~g~~CG~C~eV~c~~~~~~C~~g~~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~ 131 (250)
+||.+-.=-.....|++|||++-++++. .+|+.+|++++.=-. + ..+||||..+
T Consensus 70 faA~~~~G~~e~~~Cc~Cy~LtFt~g~l----~GKkmiVQ~tNtG~d---l----------g~n~FDl~iP 123 (201)
T PF02015_consen 70 FAAASITGGSESSWCCACYELTFTSGPL----KGKKMIVQVTNTGGD---L----------GSNQFDLAIP 123 (201)
T ss_dssp EEEEE-TT--HHHHTT-EEEEEE-SSTT----TT-EEEEEEEEE-TT---T----------TTTEEEEE-T
T ss_pred eeeeeecCCCCCCcccceEEEEEcCCCc----CCCEeEEEecccCCC---C----------CCCeEEEEeC
Confidence 5666522122337899999999987654 358999999998221 1 2579999743
No 16
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=68.45 E-value=13 Score=28.41 Aligned_cols=48 Identities=17% Similarity=0.309 Sum_probs=33.8
Q ss_pred eEEEEEEecCCcee----ecccccCceEEeC--CC-------CCCcceEEEEEecCCcEEE
Q 025617 183 VIAVKVKGSKTGWI----PMARNWGQNWQSN--VN-------LTGQPLSFEVTTSNRKTLT 230 (250)
Q Consensus 183 I~sVeI~~~~~~W~----~m~r~~g~~W~~~--~~-------l~g~P~~vrvts~~G~~vv 230 (250)
-++|+|.++-.+|. +|.|...-.|+.. .. ..+..+.++|+..+|+++.
T Consensus 16 A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~ 76 (99)
T cd02854 16 AEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWID 76 (99)
T ss_pred CCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEE
Confidence 45677776644564 4888777789853 21 2567999999998887753
No 17
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=65.65 E-value=20 Score=33.24 Aligned_cols=76 Identities=18% Similarity=0.310 Sum_probs=49.9
Q ss_pred eEEEEEEeccCCceeEEEcC-CcceEEEEEEEecCCcceEEEEEEecCCceeecccccCceEEeCCCCCCcceEEEEEe-
Q 025617 146 VQYRRVKCERRGGLRFTVSG-SSHFYQVLVTNVGLDGEVIAVKVKGSKTGWIPMARNWGQNWQSNVNLTGQPLSFEVTT- 223 (250)
Q Consensus 146 i~~r~V~C~~~g~i~~~v~~-~~yw~~v~v~n~~g~~~I~sVeI~~~~~~W~~m~r~~g~~W~~~~~l~g~P~~vrvts- 223 (250)
+.|..|. .++.+.|.+.+ ++.+ ...++.+.|...+|-.. .| +++|+|+|
T Consensus 48 l~wq~l~--~~~~~~~~L~~~sq~~-----~f~~~~s~vAAf~lPan---------------------~G-~l~i~LsS~ 98 (303)
T PRK10564 48 LTWQPVD--QSKTQTTQLATGGQQL-----NVAGISGPVAAYSLPAN---------------------IG-ELTLTLSSL 98 (303)
T ss_pred CCceEcc--CCCceEEEeCCCCcce-----ecCCCcccEEEEEcccc---------------------cc-cEEEEEEEE
Confidence 4677775 45788888876 6655 22234456665555432 23 88999998
Q ss_pred cCCcEEEEccccC--CCCcCCcEEeccCC
Q 025617 224 SNRKTLTSYNVAP--ANWQFGQTYEGKQF 250 (250)
Q Consensus 224 ~~G~~vv~~~viP--~~w~~G~~y~~~~~ 250 (250)
..+++|.+.+|+- ++|++-.+|++..|
T Consensus 99 v~~~~VfaPnVlvLD~~~~~~~~y~s~~F 127 (303)
T PRK10564 99 VNDKSVFAPNVLVLDQNMRPAAFYPSSYF 127 (303)
T ss_pred ecCCcEEeceEEEEcCCCCEEEEecccce
Confidence 3345788887544 88888888877665
No 18
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=58.82 E-value=81 Score=25.38 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=26.6
Q ss_pred CceeEEEcC------CcceEEEEEEEecCCcceEEEEEEec
Q 025617 157 GGLRFTVSG------SSHFYQVLVTNVGLDGEVIAVKVKGS 191 (250)
Q Consensus 157 g~i~~~v~~------~~yw~~v~v~n~~g~~~I~sVeI~~~ 191 (250)
..+++.+.+ -+||.-+.|.|.+| ...++|+|++.
T Consensus 34 p~l~v~~~~~~r~~~gqyyVpF~V~N~gg-~TAasV~V~ge 73 (122)
T TIGR02588 34 AVLEVAPAEVERMQTGQYYVPFAIHNLGG-TTAAAVNIRGE 73 (122)
T ss_pred CeEEEeehheeEEeCCEEEEEEEEEeCCC-cEEEEEEEEEE
Confidence 356655543 55999999999986 58999999975
No 19
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=57.09 E-value=15 Score=29.57 Aligned_cols=49 Identities=16% Similarity=0.296 Sum_probs=27.6
Q ss_pred CCc-ceEEEEEEec-CCceeeccccc--C---------c--eEEeC---CCCCC-cceEEEEEecCCc
Q 025617 179 LDG-EVIAVKVKGS-KTGWIPMARNW--G---------Q--NWQSN---VNLTG-QPLSFEVTTSNRK 227 (250)
Q Consensus 179 g~~-~I~sVeI~~~-~~~W~~m~r~~--g---------~--~W~~~---~~l~g-~P~~vrvts~~G~ 227 (250)
|.+ +|++|||..+ |.+|++..... . + .|++. ..+.| --+.+|-||.+|.
T Consensus 38 g~g~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~g~~~~aW~~W~~~~~~~~~~G~~~i~~RA~D~~G~ 105 (131)
T PF03404_consen 38 GGGRGIARVEVSTDGGKTWQEATLDGPESPPRYGEARWAWRLWEYDWPPPSLPGEYTIMVRATDESGN 105 (131)
T ss_dssp STT--EEEEEEESSTTSSEEE-EEESTSCCCHHTS-TTS-EEEEEEEEECSHCCEEEEEEEEEETTS-
T ss_pred CCCcceEEEEEEeCCCCCcEEeEeccCCCcccccccCcccceeeeccCcCccccceEEEEEEeecccc
Confidence 335 8999999988 45699766432 1 1 35543 12234 2466666777773
No 20
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=48.00 E-value=35 Score=31.58 Aligned_cols=49 Identities=16% Similarity=0.135 Sum_probs=30.1
Q ss_pred CCcceEEEEEEecCC-ceeecccccC----c---eEEeCC-CCCC-cceEEEEEecCCc
Q 025617 179 LDGEVIAVKVKGSKT-GWIPMARNWG----Q---NWQSNV-NLTG-QPLSFEVTTSNRK 227 (250)
Q Consensus 179 g~~~I~sVeI~~~~~-~W~~m~r~~g----~---~W~~~~-~l~g-~P~~vrvts~~G~ 227 (250)
|...|++|||..+++ +|++..-... - .|...- +..+ --+.+|.+|..|+
T Consensus 234 g~~~I~rVEvS~DgG~tW~~A~l~~~~~~~~~W~~W~~~~~~~~G~~~l~vRA~D~~g~ 292 (317)
T cd02110 234 GGRGIRRVEVSLDGGRTWQEARLEGPLAGPRAWRQWELDWDLPPGEYELVARATDSTGN 292 (317)
T ss_pred CCCCEEEEEEEeCCCCcceEeEccCCcCCCCEEEEEEEEEEcCCCcEEEEEEEECCCCC
Confidence 336799999999954 8998765321 1 344432 2233 2466677777773
No 21
>PRK13701 psiB plasmid SOS inhibition protein B; Provisional
Probab=35.90 E-value=1.1e+02 Score=25.17 Aligned_cols=44 Identities=30% Similarity=0.404 Sum_probs=25.9
Q ss_pred CeeceEEEEEEeccCCceeEEE--cC--CcceEEEEEEEecCCcceEEEEEE
Q 025617 142 DIVPVQYRRVKCERRGGLRFTV--SG--SSHFYQVLVTNVGLDGEVIAVKVK 189 (250)
Q Consensus 142 G~v~i~~r~V~C~~~g~i~~~v--~~--~~yw~~v~v~n~~g~~~I~sVeI~ 189 (250)
|-+||+-|+-| -.++..+.+ -| +|+|+.+++ +.+| .++.-|...
T Consensus 58 GffPVq~Rfsp--~~~~~~l~vCSpG~~sP~W~~Vl~-~~gG-~~~a~v~~~ 105 (144)
T PRK13701 58 GFFPVQVRFTP--AHERFHLALCSPGDVSPVWVLVLV-NAGG-EPFAVVQVQ 105 (144)
T ss_pred CeeeEEEEecC--CCCCeEEEEeCCCCCCcceEEEEE-cCCC-cEEEEEEec
Confidence 55666666655 224555544 33 999998887 5664 355544443
No 22
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=35.12 E-value=59 Score=30.82 Aligned_cols=49 Identities=16% Similarity=0.321 Sum_probs=29.3
Q ss_pred CCcceEEEEEEecC-Cceeecccc--cCc----eEEeC-CC-CCC-cceEEEEEecCCc
Q 025617 179 LDGEVIAVKVKGSK-TGWIPMARN--WGQ----NWQSN-VN-LTG-QPLSFEVTTSNRK 227 (250)
Q Consensus 179 g~~~I~sVeI~~~~-~~W~~m~r~--~g~----~W~~~-~~-l~g-~P~~vrvts~~G~ 227 (250)
|...|++|||..++ .+|++..-. .+. .|+.. .+ ..+ --+.+|-||..|+
T Consensus 286 G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~W~~~~~~~~~G~~~l~~RA~D~~G~ 344 (367)
T cd02114 286 GGSGIRRVDVSADGGDSWTQATLGPDLGRFSFRGWKLTLDGVKKGPLTLMVRATNNDGQ 344 (367)
T ss_pred CCCCEEEEEEEeCCCCcceEeEeCCCCCCcEEEEEEEEEECCCCCcEEEEEEEEcCCCC
Confidence 34689999999984 579976532 222 24443 12 233 2456666777773
No 23
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=35.04 E-value=1.4e+02 Score=21.98 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=20.0
Q ss_pred eeccccc-CceEEe--CCCCCCcceEEEEEecCCcEE
Q 025617 196 IPMARNW-GQNWQS--NVNLTGQPLSFEVTTSNRKTL 229 (250)
Q Consensus 196 ~~m~r~~-g~~W~~--~~~l~g~P~~vrvts~~G~~v 229 (250)
.+|.|.. ...|.. +....+..+.+|++..+|++.
T Consensus 49 ~~m~~~~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~ 85 (106)
T cd02855 49 HPMRRRGDSGVWELFIPGLGEGELYKYEILGADGHLP 85 (106)
T ss_pred eecEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEE
Confidence 3677654 566764 322333468999887555443
No 24
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=34.33 E-value=58 Score=30.41 Aligned_cols=50 Identities=12% Similarity=-0.056 Sum_probs=28.8
Q ss_pred cCCcceEEEEEEecC-Cceeecccc--cC-ceEE---eC-CCCCC-cceEEEEEecCCc
Q 025617 178 GLDGEVIAVKVKGSK-TGWIPMARN--WG-QNWQ---SN-VNLTG-QPLSFEVTTSNRK 227 (250)
Q Consensus 178 ~g~~~I~sVeI~~~~-~~W~~m~r~--~g-~~W~---~~-~~l~g-~P~~vrvts~~G~ 227 (250)
.|.++|++|||..++ .+|+..... .+ ..|+ .. .+..+ --+-+|-||..|+
T Consensus 235 sG~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~w~~~w~~~~g~~~i~~RA~D~~G~ 293 (326)
T cd02113 235 SGRGRIRRVDVSFDGGRTWQDARLEGPVLPKALTRFRLPWKWDGRPAVLQSRATDETGY 293 (326)
T ss_pred CCCCCEEEEEEEcCCCCCceECccCCCCCCCceEEEeEEEEcCCCeEEEEEEEEcCCCC
Confidence 344679999999984 579976542 11 1232 22 12223 2456666777773
No 25
>PLN00177 sulfite oxidase; Provisional
Probab=31.52 E-value=1.2e+02 Score=29.17 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=17.1
Q ss_pred cCCcceEEEEEEecC-Cceeeccc
Q 025617 178 GLDGEVIAVKVKGSK-TGWIPMAR 200 (250)
Q Consensus 178 ~g~~~I~sVeI~~~~-~~W~~m~r 200 (250)
+|..+|++|||..++ .+|+....
T Consensus 293 ggg~~I~rVEVS~DgG~tW~~A~l 316 (393)
T PLN00177 293 GGGRGIERVDISVDGGKTWVEASR 316 (393)
T ss_pred CCCccEEEEEEEcCCCCCceeeee
Confidence 333479999999984 57997654
No 26
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=31.29 E-value=1.1e+02 Score=21.92 Aligned_cols=45 Identities=24% Similarity=0.426 Sum_probs=27.5
Q ss_pred EEEEEEecCCce--eecccccCceEEeCCCCCCcceEEEEEecCCcEE
Q 025617 184 IAVKVKGSKTGW--IPMARNWGQNWQSNVNLTGQPLSFEVTTSNRKTL 229 (250)
Q Consensus 184 ~sVeI~~~~~~W--~~m~r~~g~~W~~~~~l~g~P~~vrvts~~G~~v 229 (250)
++|+|.++=.+| .+|+|.....|+..-.+..+.+..|+. .+|++.
T Consensus 14 ~~V~v~G~fn~W~~~~m~~~~~G~w~~~~~l~~G~y~Ykf~-vdg~~~ 60 (82)
T cd02861 14 DSVYLAGSFNNWNAIPMEREGDGLWVVTVELRPGRYEYKFV-VDGEWV 60 (82)
T ss_pred CEEEEEeECCCCCcccCEECCCCcEEEEEeCCCCcEEEEEE-ECCEEe
Confidence 788888874467 468887656787643343224455554 356665
No 27
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=29.60 E-value=1.3e+02 Score=28.44 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=17.5
Q ss_pred cCCcceEEEEEEecC-Cceeeccc
Q 025617 178 GLDGEVIAVKVKGSK-TGWIPMAR 200 (250)
Q Consensus 178 ~g~~~I~sVeI~~~~-~~W~~m~r 200 (250)
+|...|++|||..++ .+|+...-
T Consensus 273 gg~~~I~rVEVS~DgG~tW~~A~l 296 (365)
T cd02111 273 GGGRKIVRVDVSLDGGRTWKVAEL 296 (365)
T ss_pred CCCCcEEEEEEECCCCCcceeCCc
Confidence 444579999999984 57997654
No 28
>PRK15205 long polar fimbrial protein LpfE; Provisional
Probab=28.34 E-value=36 Score=28.37 Aligned_cols=45 Identities=22% Similarity=0.228 Sum_probs=30.0
Q ss_pred CCCCchHHHHHHHHhhhhccccCC-CceEEEEEEeCCCCCCCCCcCccCCC
Q 025617 1 MGAPQAIVFFLILLQTCKTAAQHE-EWNSATATYTKETNGSIIIEGACGYG 50 (250)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~aT~Yg~~~g~~~~~GACGyg 50 (250)
|+-|++++.++++++++.+.+... .-..|..+|.|. ....+|...
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~f~G~-----I~~~tC~i~ 46 (176)
T PRK15205 1 MKNKRALLPLALLLLTASGMAAPTDLGPAGDIHFTIT-----IKAKACELE 46 (176)
T ss_pred CchHHHHHHHHHHhcchhhhcCCCcccCCeEEEEEEE-----EEeccceec
Confidence 778888877766666444444433 345699999997 345789753
No 29
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=27.96 E-value=1e+02 Score=23.57 Aligned_cols=34 Identities=12% Similarity=0.132 Sum_probs=19.7
Q ss_pred cccccCceEEeCCCCCCcceEEEEEecCCcEEEEc
Q 025617 198 MARNWGQNWQSNVNLTGQPLSFEVTTSNRKTLTSY 232 (250)
Q Consensus 198 m~r~~g~~W~~~~~l~g~P~~vrvts~~G~~vv~~ 232 (250)
++.+-+-.|.....-.| +|+++.+|++|+.....
T Consensus 64 iS~NP~l~F~~~~~~~g-~l~v~~~Dn~G~~~~~~ 97 (100)
T PF08770_consen 64 ISENPYLRFSFKGKKSG-TLTVTWTDNKGNSFSAE 97 (100)
T ss_dssp B-SS-EEEEEEEESSSE-EEEEEEEETTS-EEEEE
T ss_pred ccCCCcEEEEEecCCCc-EEEEEEEECCCCEEEEE
Confidence 55554444555433344 88888889888776654
No 30
>PF06290 PsiB: Plasmid SOS inhibition protein (PsiB); InterPro: IPR009385 This family consists of several plasmid SOS inhibition protein (PsiB) sequences [].; PDB: 3NCT_B.
Probab=27.76 E-value=1.9e+02 Score=23.86 Aligned_cols=45 Identities=27% Similarity=0.366 Sum_probs=24.8
Q ss_pred CCeeceEEEEEEeccCCceeEEE--cC--CcceEEEEEEEecCCcceEEEEEE
Q 025617 141 ADIVPVQYRRVKCERRGGLRFTV--SG--SSHFYQVLVTNVGLDGEVIAVKVK 189 (250)
Q Consensus 141 ~G~v~i~~r~V~C~~~g~i~~~v--~~--~~yw~~v~v~n~~g~~~I~sVeI~ 189 (250)
-|-+||+-|+-|=. +...+.+ -| +|+|+.+++. .+| .++.=|...
T Consensus 57 gGffPVq~Rftp~~--~~~~l~vCSpG~~sp~W~~vl~~-~~G-~~~~vv~t~ 105 (143)
T PF06290_consen 57 GGFFPVQCRFTPSH--ERFHLAVCSPGEVSPYWMLVLVN-RGG-QPFAVVRTQ 105 (143)
T ss_dssp -S-SSSEEEEEETT---SEEEEEE-SSSS-SSEEEEEEE-CCC--SEEEEEEE
T ss_pred ccEeeEEEEecCCC--CcEEEEEcCCCCcCcceEEEEEC-CCC-cEEEEEEec
Confidence 36778777776544 4444444 33 9999977764 444 466655554
No 31
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=26.40 E-value=53 Score=18.89 Aligned_cols=10 Identities=50% Similarity=0.680 Sum_probs=6.5
Q ss_pred hHHHHHHHHh
Q 025617 6 AIVFFLILLQ 15 (250)
Q Consensus 6 ~~~~~~~~~~ 15 (250)
+|+++||+|.
T Consensus 8 livVLFILLi 17 (24)
T PF09680_consen 8 LIVVLFILLI 17 (24)
T ss_pred hHHHHHHHHH
Confidence 5666666665
No 32
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=26.11 E-value=37 Score=21.65 Aligned_cols=11 Identities=45% Similarity=0.960 Sum_probs=9.3
Q ss_pred cccCCCCcCCc
Q 025617 233 NVAPANWQFGQ 243 (250)
Q Consensus 233 ~viP~~w~~G~ 243 (250)
.+.|+||++|.
T Consensus 10 v~tPanW~pGd 20 (40)
T PF10417_consen 10 VATPANWKPGD 20 (40)
T ss_dssp SBBCTTTCTTS
T ss_pred cccCcCCCCCC
Confidence 48899999885
No 33
>PF12863 DUF3821: Domain of unknown function (DUF3821); InterPro: IPR024277 This is a domain largely confined to sequences from Methanomicrobiales. It is found in putative lipases but the function is unknown.
Probab=25.70 E-value=3e+02 Score=24.09 Aligned_cols=94 Identities=21% Similarity=0.223 Sum_probs=45.5
Q ss_pred CceeeCHHHHHHHhcccCCeeceEEEEEEeccCCceeEEEcCCcceEEEEEEEecCCcceEEEEEEec-CCceeeccccc
Q 025617 124 EHFEMSEAAFVEIAERRADIVPVQYRRVKCERRGGLRFTVSGSSHFYQVLVTNVGLDGEVIAVKVKGS-KTGWIPMARNW 202 (250)
Q Consensus 124 ~~~DLs~~AF~~ia~~~~G~v~i~~r~V~C~~~g~i~~~v~~~~yw~~v~v~n~~g~~~I~sVeI~~~-~~~W~~m~r~~ 202 (250)
.+|.++|.+|..=. | .|..-+=...+.+.|.|++-. ++|.|.+..-..+|..-.|... .-+++- +
T Consensus 48 ~~FyV~P~~f~~~t----G----~WY~~~~~~~~~~aF~V~~Ps--l~l~v~d~~t~~dvt~~~V~~G~~v~FrI----~ 113 (209)
T PF12863_consen 48 TNFYVSPAAFGGKT----G----NWYQWNGTPKGDVAFYVQDPS--LSLKVWDANTDKDVTGKTVPRGDNVNFRI----D 113 (209)
T ss_pred cCEEEChHHhCCcc----c----ceEecCCCCCcceEEEEeCCc--eEEEEEeccccccccCceeccCCeEEEEE----c
Confidence 58999999995432 2 233322222236778887622 5666665542234433233211 001110 1
Q ss_pred CceEE---eCCC-CCCcceEEEEEecCCcEEEE
Q 025617 203 GQNWQ---SNVN-LTGQPLSFEVTTSNRKTLTS 231 (250)
Q Consensus 203 g~~W~---~~~~-l~g~P~~vrvts~~G~~vv~ 231 (250)
-|.+. -.+. ....+++++|++.+|.+...
T Consensus 114 tNL~~~~~R~g~~~~~~~v~I~V~~P~G~~~t~ 146 (209)
T PF12863_consen 114 TNLYSIFQRGGYTPGDGPVDIKVTTPSGATYTS 146 (209)
T ss_pred ccHHHHhhcCCCCCCcceEEEEEeCCCCcEEEE
Confidence 11111 1111 11125999999888866553
No 34
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=24.85 E-value=41 Score=25.73 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=10.8
Q ss_pred CCCCchHHHH----HHHHhhhhccc
Q 025617 1 MGAPQAIVFF----LILLQTCKTAA 21 (250)
Q Consensus 1 ~~~~~~~~~~----~~~~~~~~~~~ 21 (250)
|.-|.+++|. ++||+|+++.|
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhh
Confidence 5556666654 22444444444
No 35
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=23.40 E-value=1e+02 Score=24.93 Aligned_cols=28 Identities=25% Similarity=0.550 Sum_probs=23.9
Q ss_pred cccCCeeceEEEEEEecc---CCceeEEEcC
Q 025617 138 ERRADIVPVQYRRVKCER---RGGLRFTVSG 165 (250)
Q Consensus 138 ~~~~G~v~i~~r~V~C~~---~g~i~~~v~~ 165 (250)
++.+|.+-+.||.|+=+- .|.+.|.|++
T Consensus 96 ~L~aG~Y~v~WrvvS~DGH~v~G~~sFsV~~ 126 (127)
T COG2372 96 PLKAGVYTVDWRVVSSDGHVVKGSISFSVGA 126 (127)
T ss_pred cCCCCcEEEEEEEEecCCcEeccEEEEEecC
Confidence 578999999999999874 5789998864
No 36
>PRK10301 hypothetical protein; Provisional
Probab=23.01 E-value=1.1e+02 Score=24.42 Aligned_cols=27 Identities=19% Similarity=0.389 Sum_probs=21.7
Q ss_pred cccCCeeceEEEEEEecc---CCceeEEEc
Q 025617 138 ERRADIVPVQYRRVKCER---RGGLRFTVS 164 (250)
Q Consensus 138 ~~~~G~v~i~~r~V~C~~---~g~i~~~v~ 164 (250)
.+..|.+.|+||-|+=+- .|.++|.|+
T Consensus 95 ~L~~G~YtV~Wrvvs~DGH~~~G~~~F~V~ 124 (124)
T PRK10301 95 SLKPGTYTVDWHVVSVDGHKTKGHYTFSVK 124 (124)
T ss_pred CCCCccEEEEEEEEecCCCccCCeEEEEEC
Confidence 357899999999999653 578888875
No 37
>TIGR01913 bet_lambda phage recombination protein Bet. This model represents the phage recombination protein Bet from a number of phage, including phage lambda. All members of this family are found in phage genomes or in putative prophage regions of bacterial genomes.
Probab=20.49 E-value=1.2e+02 Score=26.03 Aligned_cols=63 Identities=16% Similarity=0.237 Sum_probs=38.6
Q ss_pred CceeeCHHHHHHHhcccC---CeeceEEEEEEeccCCceeEEEcC-CcceEEEEEEEecCCcceEEEEEE
Q 025617 124 EHFEMSEAAFVEIAERRA---DIVPVQYRRVKCERRGGLRFTVSG-SSHFYQVLVTNVGLDGEVIAVKVK 189 (250)
Q Consensus 124 ~~~DLs~~AF~~ia~~~~---G~v~i~~r~V~C~~~g~i~~~v~~-~~yw~~v~v~n~~g~~~I~sVeI~ 189 (250)
..|-++.+.|.++|+++. |.+.+++....|...+.+.++..+ -..|..++..+.. .+++ +++.
T Consensus 70 ~~~ivg~dg~~~~A~rsg~~~G~i~~~~~~~~~~~~g~~~~~~~~~~~~w~~v~~kd~~--~pf~-~~~~ 136 (188)
T TIGR01913 70 MTIIVGIEGFRKRAERTEQYDGFIKVERNDEGCEIEGVVKIRQDALCGGWAEVMGKDRR--ERFA-ISVP 136 (188)
T ss_pred eEEEEcHHHHHHHHHHCCCCCceeeeeeCCceEEEeeEEecCCCCeeEEEEEEEecCcc--cceE-EEEe
Confidence 478999999999998644 655555555556554443333222 4567666664433 5565 5554
Done!