Query 025618
Match_columns 250
No_of_seqs 173 out of 1117
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 07:41:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025618.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025618hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02202 carbonate dehydratase 100.0 4.5E-75 9.8E-80 514.5 22.8 233 12-246 28-268 (284)
2 COG3338 Cah Carbonic anhydrase 100.0 1.6E-72 3.4E-77 469.6 17.2 224 12-243 25-249 (250)
3 cd03124 alpha_CA_prokaryotic_l 100.0 1.9E-71 4E-76 475.7 21.4 214 24-241 1-215 (216)
4 cd03121 alpha_CARP_X_XI_like C 100.0 1.1E-70 2.4E-75 481.6 22.3 221 24-245 1-256 (256)
5 cd03119 alpha_CA_I_II_III_XIII 100.0 6.2E-70 1.3E-74 477.8 22.7 225 13-243 3-258 (259)
6 cd03126 alpha_CA_XII_XIV Carbo 100.0 6.2E-68 1.3E-72 462.5 21.8 213 24-243 1-248 (249)
7 PF00194 Carb_anhydrase: Eukar 100.0 4.6E-68 9.9E-73 465.7 18.1 223 15-243 1-255 (256)
8 cd03125 alpha_CA_VI Carbonic a 100.0 2.3E-67 5.1E-72 458.7 21.5 215 24-243 1-247 (249)
9 cd03122 alpha_CARP_receptor_li 100.0 4.1E-67 8.8E-72 458.4 21.7 215 24-241 1-252 (253)
10 cd03123 alpha_CA_VI_IX_XII_XIV 100.0 8.8E-67 1.9E-71 455.0 21.1 215 24-243 1-247 (248)
11 cd03150 alpha_CA_IX Carbonic a 100.0 1.4E-66 3E-71 453.4 20.9 215 24-243 1-245 (247)
12 cd03149 alpha_CA_VII Carbonic 100.0 1.3E-65 2.8E-70 444.7 20.7 203 41-243 1-235 (236)
13 cd03118 alpha_CA_V Carbonic an 100.0 1.6E-65 3.5E-70 444.1 20.8 203 41-243 1-235 (236)
14 cd03120 alpha_CARP_VIII Carbon 100.0 4.8E-65 1E-69 446.0 22.3 212 26-243 2-255 (256)
15 KOG0382 Carbonic anhydrase [Ge 100.0 1.4E-64 3.1E-69 441.2 21.0 227 13-244 3-261 (262)
16 PLN02179 carbonic anhydrase 100.0 1.5E-64 3.2E-69 436.1 16.9 198 11-209 33-230 (235)
17 cd03117 alpha_CA_IV_XV_like Ca 100.0 1.9E-63 4.1E-68 430.8 19.5 199 41-242 1-234 (234)
18 cd00326 alpha_CA Carbonic anhy 100.0 1.5E-62 3.3E-67 423.6 20.0 201 41-241 1-227 (227)
19 PF09211 DUF1958: Domain of un 37.9 9.4 0.0002 26.4 -0.3 17 110-126 8-24 (65)
20 KOG0427 Ubiquitin conjugating 33.8 1.8E+02 0.0039 23.0 6.2 77 73-160 38-127 (161)
21 KOG3110 Riboflavin kinase [Coe 32.9 74 0.0016 25.4 3.9 45 113-158 77-127 (153)
22 PHA02614 Major capsid protein 24.4 1.3E+02 0.0028 27.7 4.5 40 178-217 213-266 (363)
23 PHA02771 hypothetical protein; 22.5 76 0.0016 23.3 2.2 19 201-219 24-42 (90)
24 smart00190 IL4_13 Interleukins 21.4 28 0.00061 27.7 -0.3 41 147-213 28-68 (138)
25 PF03633 Glyco_hydro_65C: Glyc 21.1 1.5E+02 0.0033 18.9 3.3 38 65-102 14-53 (54)
No 1
>PLN02202 carbonate dehydratase
Probab=100.00 E-value=4.5e-75 Score=514.48 Aligned_cols=233 Identities=40% Similarity=0.781 Sum_probs=208.1
Q ss_pred CCCcccCCCCCCCCCCcCCcCCCcccCCCCCCCCcceeeCCceeecCCCCCceeeccCCceEEEecCeeEEEEecCCCCc
Q 025618 12 ETPFSYKEETGKGPSEWGKISPHWRVCGIGKLQSPIDLLNQRVQVLPALGKLKRDYKPALAVVKNRGHDICVWWRGDAGK 91 (250)
Q Consensus 12 ~~~w~Y~~~~~~gP~~W~~l~~~~~~C~~G~~QSPIdI~~~~~~~~~~l~~l~~~y~~~~~~l~N~G~tv~v~~~~~~~~ 91 (250)
+..|+|+ + .+||++|+.++++|..|++|++||||||.+..+.....+.+|.++|....++|.|+||++++.+.++.+.
T Consensus 28 ~~~w~Y~-~-~~GP~~W~~l~~~~~~C~~G~~QSPIdI~~~~~~~~~~l~~l~~~~~~~~~~l~N~Ghtv~v~~~~~~~~ 105 (284)
T PLN02202 28 GVVFGYK-G-KNGPNQWGHLNPHFTKCAVGKLQSPIDIQRRQIFYNHKLESIHRDYYFTNATLVNHVCNVAMFFGEGAGD 105 (284)
T ss_pred CCCcCCC-C-CCChhhhhhcCcchhhccCCCccCCEeecCCccccCCCCCceeeeccCCceEEEECCccEEEEEcCCCCe
Confidence 3489993 4 4599999999999999999999999999987766677888999988777789999999999999655567
Q ss_pred eEEcCeEEEeeeeeecCCCCccccccccceeEeeeeecCCCCeEEEEEEEecCCCChhHHHHHHHhhhcccc--------
Q 025618 92 MHINGTIYKLLQCHWHTPSEHTINGSSYEMELHLVHLSSDGKLAVTGIVYEYGRPDPFLSKLLHHIKSLGKE-------- 163 (250)
Q Consensus 92 ~~~~g~~Y~l~q~HfH~gSEH~idG~~~~~E~H~Vh~~~~~~laVl~v~~~~g~~n~~l~~i~~~l~~i~~~-------- 163 (250)
+.++|.+|.|.||||||||||+|||++|||||||||++.++++|||||||++|+.|++++.|++.+..+...
T Consensus 106 ~~~~g~~Y~L~QfHFH~gSEH~idG~~yp~E~H~VH~~~~g~laVlgv~~~~g~~n~~l~~i~~~l~~i~~~~~~~~~~~ 185 (284)
T PLN02202 106 VIIDNKNYTLLQMHWHTPSEHHLHGVQYAAELHMVHQAKDGSFAVVASLFKIGTEEPFLSQMKDKLVKLKEERFKGNHTA 185 (284)
T ss_pred eEECCcEEEEEEEEecCCcccEECCeeCCeEEEEEEEcCCCCEEEEEEEEeccCCChHHHHHHHHHHHhhcccccCcccc
Confidence 889999999999999999999999999999999999999999999999999999999999999988876421
Q ss_pred ceeecccCCCCCCCCCCceEEEeeccCCCCCccceEEeecceeecccHHHHHHHHHHhcCCCCCCCCCCCCCCCCcEEEE
Q 025618 164 EKEVGIVNPGDIKFGSRKYYRYIGSLTVPPCTEGVIWTIGNKVRTVSREQVRALKEEVHDGYEKNARPTNELNGRPIWFY 243 (250)
Q Consensus 164 ~~~~~~~~~~~L~~~~~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~iS~~Ql~~f~~~~~~~~~~N~Rp~Qpln~R~V~~~ 243 (250)
...+..+++..|+|...+||+|.||||||||+|+|+|+||++|++||.+||++||++....+.+|+||+||||||.|+++
T Consensus 186 ~~~~~~~~~~~llp~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~IS~~Ql~~fr~~~~~~l~~N~RpvQplngR~V~~~ 265 (284)
T PLN02202 186 QVEVGKIDTRHIERKTRKYFRYIGSLTTPPCSENVSWTILGKVRSMSKEQVELLRSPLDKSFKNNSRPCQPLNGRRVEMF 265 (284)
T ss_pred cccccccCHHHhCccccceEEEeccccCCCCCCceEEEEeCceEEcCHHHHHHHHHhhhcccCCCCCCCCCCCCCEEEEe
Confidence 11234577888888889999999999999999999999999999999999999999887667899999999999999998
Q ss_pred CCC
Q 025618 244 SPF 246 (250)
Q Consensus 244 ~~~ 246 (250)
.+.
T Consensus 266 ~~~ 268 (284)
T PLN02202 266 HDH 268 (284)
T ss_pred cCe
Confidence 764
No 2
>COG3338 Cah Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-72 Score=469.57 Aligned_cols=224 Identities=36% Similarity=0.638 Sum_probs=204.1
Q ss_pred CCCcccCCCCCCCCCCcCCcCCCcccCCCCCCCCcceeeCCceeecCCCCCceeeccCCceEEEecCeeEEEEecCCCCc
Q 025618 12 ETPFSYKEETGKGPSEWGKISPHWRVCGIGKLQSPIDLLNQRVQVLPALGKLKRDYKPALAVVKNRGHDICVWWRGDAGK 91 (250)
Q Consensus 12 ~~~w~Y~~~~~~gP~~W~~l~~~~~~C~~G~~QSPIdI~~~~~~~~~~l~~l~~~y~~~~~~l~N~G~tv~v~~~~~~~~ 91 (250)
+..|+| .|.. ||++|++|++++..|+.|++||||||...... .++.++.++|.++..+|+|||||+++.+.++...
T Consensus 25 ~~~WgY-~g~~-GPEhWg~L~~df~~C~~Gk~QSPIdI~~~~~~--~~~~~l~~~Y~~s~~~i~nnghTiqv~~~~~~n~ 100 (250)
T COG3338 25 EVHWGY-TGKE-GPEHWGELSPDFEACAEGKNQSPIDIEHAVDV--QDKPPLQLNYQPSAVTIKNNGHTIQVNFEPGSNH 100 (250)
T ss_pred cccccc-cCCc-CchhhhhcCchhhHhhccccCCCccHHHheec--ccccchheeeccCceEEEecCcEEEEeccCCCcc
Confidence 358999 5665 99999999999999999999999999764322 2567888999889999999999999999876668
Q ss_pred eEEcCeEEEeeeeeecCCCCccccccccceeEeeeeecCCCCeEEEEEEEecCCCChhHHHHHHHhhhccccceee-ccc
Q 025618 92 MHINGTIYKLLQCHWHTPSEHTINGSSYEMELHLVHLSSDGKLAVTGIVYEYGRPDPFLSKLLHHIKSLGKEEKEV-GIV 170 (250)
Q Consensus 92 ~~~~g~~Y~l~q~HfH~gSEH~idG~~~~~E~H~Vh~~~~~~laVl~v~~~~g~~n~~l~~i~~~l~~i~~~~~~~-~~~ 170 (250)
+.++|+.|.|.|||||.||||.|||+.||||+||||.+.+|.|||||||++.|..|+.|..|.+.++.....+..+ ..+
T Consensus 101 l~~~gk~y~L~qfHFH~PsEhlv~Gk~~pmEaHFVHkd~~g~L~Vl~v~~~~g~eN~~l~~l~~~fP~~~ge~~~l~~~i 180 (250)
T COG3338 101 LRYDGKTYQLVQFHFHAPSEHLVDGKSFPMEAHFVHKDAKGTLAVLAVLLQAGAENPELAPLWEGFPQKPGEEETLDETI 180 (250)
T ss_pred eeecCcEEEEEEEEecCchHHhhccccccceeeeeecCCCCCEEEEEEeeecCCCCcchhHHHHhcccccccccceeecc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999775533224 349
Q ss_pred CCCCCCCCCCceEEEeeccCCCCCccceEEeecceeecccHHHHHHHHHHhcCCCCCCCCCCCCCCCCcEEEE
Q 025618 171 NPGDIKFGSRKYYRYIGSLTVPPCTEGVIWTIGNKVRTVSREQVRALKEEVHDGYEKNARPTNELNGRPIWFY 243 (250)
Q Consensus 171 ~~~~L~~~~~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~iS~~Ql~~f~~~~~~~~~~N~Rp~Qpln~R~V~~~ 243 (250)
|++.|+|....||+|+||||||||+|+|.|+|+++|+.+|++|+++|.+++. .|+||+||+|+|.|..+
T Consensus 181 d~~~~lP~s~~yyty~GSLTTPPCsEgV~W~Vl~ep~evs~~qi~~f~~~~~----~N~RPVQp~N~R~I~~~ 249 (250)
T COG3338 181 DLNAFLPESRNYYTYNGSLTTPPCSEGVTWIVLKEPIEVSQEQIAEFSKLMG----HNARPVQPLNDRLILEA 249 (250)
T ss_pred ChhHhCccccceEEecccccCCCcccCceEEEEcCcccCCHHHHHHHHHHhC----CCCCCCcCCCCcEEEec
Confidence 9999999999999999999999999999999999999999999999999988 79999999999999764
No 3
>cd03124 alpha_CA_prokaryotic_like Carbonic anhydrase alpha, prokaryotic-like subfamily. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This sub-family includes bacterial carbonic anhydrase alpha, as well as plant enzymes such as tobacco nectarin III and yam dioscorin and, carbonic anhydrases from molluscs, such as nacrein, which are part of the organic matrix layer in shells. Other members of this family may be involved in maintaining pH balance, in facilitating transport of carb
Probab=100.00 E-value=1.9e-71 Score=475.69 Aligned_cols=214 Identities=44% Similarity=0.825 Sum_probs=195.6
Q ss_pred CCCCcCCcCCCcccCCCCCCCCcceeeCCceeecCCCCCceeeccCCceEEEecCeeEEEEecCCCCceEEcCeEEEeee
Q 025618 24 GPSEWGKISPHWRVCGIGKLQSPIDLLNQRVQVLPALGKLKRDYKPALAVVKNRGHDICVWWRGDAGKMHINGTIYKLLQ 103 (250)
Q Consensus 24 gP~~W~~l~~~~~~C~~G~~QSPIdI~~~~~~~~~~l~~l~~~y~~~~~~l~N~G~tv~v~~~~~~~~~~~~g~~Y~l~q 103 (250)
||++|+.++++|..|++|++||||||.+..+.... +++|.+.|.+..+++.|+||++++.+.++.+.+.++|.+|+|.|
T Consensus 1 gp~~W~~~~~~~~~C~~G~~QSPI~I~~~~~~~~~-~~~l~~~~~~~~~~l~N~G~tv~~~~~~~~~~~~~~g~~Y~l~q 79 (216)
T cd03124 1 GPEHWGNLDPEFALCATGKNQSPIDITTKAVVSDK-LPPLNYNYKPTSATLVNNGHTIQVNFEGNGGTLTIDGETYQLLQ 79 (216)
T ss_pred CCcchhhCCcchhhhcCCCCCCCEeeccCceeecC-CCCceeeccCCceEEEECCceEEEEEcCCCCeEEECCcEEEEEE
Confidence 79999999999999999999999999987776654 88999988777889999999999999765567899999999999
Q ss_pred eeecCCCCccccccccceeEeeeeecCCCCeEEEEEEEecCCCChhHHHHHHHhhhccccceeeccc-CCCCCCCCCCce
Q 025618 104 CHWHTPSEHTINGSSYEMELHLVHLSSDGKLAVTGIVYEYGRPDPFLSKLLHHIKSLGKEEKEVGIV-NPGDIKFGSRKY 182 (250)
Q Consensus 104 ~HfH~gSEH~idG~~~~~E~H~Vh~~~~~~laVl~v~~~~g~~n~~l~~i~~~l~~i~~~~~~~~~~-~~~~L~~~~~~y 182 (250)
|||||||||+|||++|||||||||++.++++|||||||++|+.|+++++|++.+..+..+...+..+ ++.+|+|+...|
T Consensus 80 ~HfH~gSEH~idg~~y~~ElH~Vh~~~~~~laVl~v~~~~~~~n~~l~~i~~~l~~~~~~~~~~~~~~~~~~llp~~~~y 159 (216)
T cd03124 80 FHFHSPSEHLINGKRYPLEAHLVHKSKDGQLAVVAVLFEEGKENPFLKKILDNMPKKEGTEVNLPAILDPNELLPESRSY 159 (216)
T ss_pred EEecCCcccEeccccCCceeeEEEEcCCCCEEEEEEEEeecCCCHHHHHHHHhhhhhcCCceeccCCCCHHHhcccCCce
Confidence 9999999999999999999999999999999999999999999999999999998775544455555 888889988999
Q ss_pred EEEeeccCCCCCccceEEeecceeecccHHHHHHHHHHhcCCCCCCCCCCCCCCCCcEE
Q 025618 183 YRYIGSLTVPPCTEGVIWTIGNKVRTVSREQVRALKEEVHDGYEKNARPTNELNGRPIW 241 (250)
Q Consensus 183 y~Y~GSLTtPpC~E~V~WiV~~~p~~iS~~Ql~~f~~~~~~~~~~N~Rp~Qpln~R~V~ 241 (250)
|+|.||||||||+|+|+|+||++|+.||++||+.||.++ +.+|+||+||||||.|+
T Consensus 160 ~~Y~GSLTtPpC~E~V~W~V~~~~~~is~~Ql~~f~~~~---~~~N~Rp~Q~ln~R~v~ 215 (216)
T cd03124 160 YRYEGSLTTPPCSEGVRWIVLKQPITISKEQLAKFRAAV---YPNNARPVQPLNGREVL 215 (216)
T ss_pred EEEeeecCCCCCcCceEEEecCCccccCHHHHHHHHHhc---cCCCCCCCCCCCCceee
Confidence 999999999999999999999999999999999999984 23899999999999986
No 4
>cd03121 alpha_CARP_X_XI_like Carbonic anhydrase alpha related protein: groups X, XI and related proteins. This subgroup contains carbonic anhydrase related proteins (CARPs) X and XI, which have been implicated in various biological processes of the central nervous system. CARPs are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. CARP XI plays a role in the development of gastrointestinal stromal tumors.
Probab=100.00 E-value=1.1e-70 Score=481.61 Aligned_cols=221 Identities=29% Similarity=0.477 Sum_probs=196.1
Q ss_pred CCCCcCCcCCCcccCCCCCCCCcceeeCCceeecCCCCCceeecc-CCceEEEecCeeEEEEecCCCCceEEcC----eE
Q 025618 24 GPSEWGKISPHWRVCGIGKLQSPIDLLNQRVQVLPALGKLKRDYK-PALAVVKNRGHDICVWWRGDAGKMHING----TI 98 (250)
Q Consensus 24 gP~~W~~l~~~~~~C~~G~~QSPIdI~~~~~~~~~~l~~l~~~y~-~~~~~l~N~G~tv~v~~~~~~~~~~~~g----~~ 98 (250)
||++|+.++++|..|++|++||||||.+..+.+++.+.+|.++|. +..++|.|+||||+|.+.++ +.+.+.| .+
T Consensus 1 GP~~W~~~~~~~~~C~~G~~QSPI~I~~~~~~~~~~l~~L~~~~~~~~~~~l~N~Ghtv~v~~~~~-~~~~i~gG~l~~~ 79 (256)
T cd03121 1 GPSFWGLVNSAWNLCSKGRRQSPVDIEPSRLLFDPFLTPLRIDTGRKVSGTFYNTGRHVSFRPDKD-PVVNISGGPLSYR 79 (256)
T ss_pred CCCcccccCCchhhccCCCCcCCEeEeccceEECCCCCceeeccCCCCceEEEECCEEEEEEECCC-CceEEeCCCCCCc
Confidence 799999999999999999999999999988877788899999886 66789999999999998643 4566644 57
Q ss_pred EEeeeeeecC------CCCccccccccceeEeeeeecCC------------CCeEEEEEEEecCC-CChhHHHHHHHhh-
Q 025618 99 YKLLQCHWHT------PSEHTINGSSYEMELHLVHLSSD------------GKLAVTGIVYEYGR-PDPFLSKLLHHIK- 158 (250)
Q Consensus 99 Y~l~q~HfH~------gSEH~idG~~~~~E~H~Vh~~~~------------~~laVl~v~~~~g~-~n~~l~~i~~~l~- 158 (250)
|+|.|||||| ||||+|||++|||||||||++.+ +++|||||||++|+ .|+.|+.|++.++
T Consensus 80 Y~l~Q~HFHwG~~~~~gSEH~idG~~yp~E~HlVH~n~~~y~~~~~A~~~~~glaVvgv~~~~g~~~n~~l~~i~~~l~~ 159 (256)
T cd03121 80 YRLEEIRLHFGREDEQGSEHTVNGQAFPGEVQLIHYNSELYPNFSEASKSPNGLVIVSLFVKIGETSNPELRRLTNRDTI 159 (256)
T ss_pred EEEEEEEEecCCCCCCCCceeeCCcccCceEEEEEEcccccCCHHHHhcCCCCeEEEEEEEeecccCCHHHHHHHHhccc
Confidence 9999999998 79999999999999999999875 89999999999996 5999999999998
Q ss_pred -hccc--cceeecccCCCCCCCCCCceEEEeeccCCCCCccceEEeecceeecccHHHHHHHHHHhcC-------CCCCC
Q 025618 159 -SLGK--EEKEVGIVNPGDIKFGSRKYYRYIGSLTVPPCTEGVIWTIGNKVRTVSREQVRALKEEVHD-------GYEKN 228 (250)
Q Consensus 159 -~i~~--~~~~~~~~~~~~L~~~~~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~iS~~Ql~~f~~~~~~-------~~~~N 228 (250)
.+.. ....+..|++..|+|...+||+|.||||||||+|+|+|+||++|++||.+||++||+++.. .+.+|
T Consensus 160 ~~i~~~~~~~~~~~~~l~~Llp~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~Is~~Ql~~fr~l~~~~~~~~~~~~~~N 239 (256)
T cd03121 160 TSIRYKGDAYFLQDLSIELLLPETDHYITYEGSLTSPGCHETVTWIILNKPIYITKEQMHSLRLLSQNSPSQEKAPMSPN 239 (256)
T ss_pred cccccCCceeecCCCCHHHHCCCCCceEEeeccccCCCCCcceEEEEeCccEecCHHHHHHHHHHhhccCCcccCcCCCC
Confidence 7754 3344556888888898899999999999999999999999999999999999999998752 24689
Q ss_pred CCCCCCCCCCcEEEECC
Q 025618 229 ARPTNELNGRPIWFYSP 245 (250)
Q Consensus 229 ~Rp~Qpln~R~V~~~~~ 245 (250)
+||+||||||.|+++.+
T Consensus 240 ~Rp~Q~ln~R~V~~~~~ 256 (256)
T cd03121 240 FRPVQPLNNRPVRTNIN 256 (256)
T ss_pred CCCCCCCCCCeEEeeCC
Confidence 99999999999998753
No 5
>cd03119 alpha_CA_I_II_III_XIII Carbonic anhydrase alpha, isozymes I, II, and III and XIII. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozymes I, II, and III, which are cytoplasmic enzymes. CA I, for example, is expressed in erythrocyes of many vertebrates; CA II is the most active cytosolic isozyme; while it is being expressed nearly ubiquitously, it comprises 95% of the renal carbonic anhydrase and is required for renal acidification; C
Probab=100.00 E-value=6.2e-70 Score=477.78 Aligned_cols=225 Identities=32% Similarity=0.553 Sum_probs=195.0
Q ss_pred CCcccCCCCCCCCCCcCCcCCCcccCCCCCCCCcceeeCCceeecCCCCCceeeccCC-ceEEEecCeeEEEEecCCCCc
Q 025618 13 TPFSYKEETGKGPSEWGKISPHWRVCGIGKLQSPIDLLNQRVQVLPALGKLKRDYKPA-LAVVKNRGHDICVWWRGDAGK 91 (250)
Q Consensus 13 ~~w~Y~~~~~~gP~~W~~l~~~~~~C~~G~~QSPIdI~~~~~~~~~~l~~l~~~y~~~-~~~l~N~G~tv~v~~~~~~~~ 91 (250)
.+|+|+ + ..||++|+.+.+ .|. |++||||||.+..+..++.+.+|.++|... ..+|+|+||||++.+.++.+.
T Consensus 3 ~~w~Y~-~-~~gp~~W~~~~~---~~~-G~~QSPI~I~~~~~~~~~~l~~l~~~y~~~~~~~l~N~G~tv~~~~~~~~~~ 76 (259)
T cd03119 3 HHWGYD-S-HNGPEHWHELFP---IAK-GDRQSPIDIKTKDAKHDPSLKPLSVSYDPATAKTILNNGHSFNVEFDDTDDR 76 (259)
T ss_pred cccCCC-C-CCCcccccccCc---CCC-CCCCCCEeEccCeeeEcCCCCceecccccCcceEEEeCCeeEEEEeCCCCCc
Confidence 569994 3 459999998765 364 999999999998887778899999999654 569999999999998754344
Q ss_pred eEEc-C---eEEEeeeeeecC------CCCccccccccceeEeeeeecCC-----------CCeEEEEEEEecCCCChhH
Q 025618 92 MHIN-G---TIYKLLQCHWHT------PSEHTINGSSYEMELHLVHLSSD-----------GKLAVTGIVYEYGRPDPFL 150 (250)
Q Consensus 92 ~~~~-g---~~Y~l~q~HfH~------gSEH~idG~~~~~E~H~Vh~~~~-----------~~laVl~v~~~~g~~n~~l 150 (250)
+.+. | .+|+|.|||||| ||||+|||++|||||||||++.+ +++|||||||++|+.|+++
T Consensus 77 ~~~~gg~l~~~Y~l~q~HfHwG~~~~~gSEH~idg~~~p~E~HlVH~n~~y~~~~~A~~~~~glaVvgvl~~~g~~n~~l 156 (259)
T cd03119 77 SVLRGGPLTGSYRLRQFHFHWGSSDDHGSEHTVDGVKYAAELHLVHWNSKYGSFGEAAKQPDGLAVVGVFLKVGEANPEL 156 (259)
T ss_pred ceEeCCCCCCcEEEEEEEEEeCCCCCCCccceecCccccceEEEEEecccCCCHHHHhcCCCCeEEEEEEEEecccchhH
Confidence 4554 3 599999999998 79999999999999999999874 7899999999999999999
Q ss_pred HHHHHHhhhccc--cceeecccCCCCCCCCCCceEEEeeccCCCCCccceEEeecceeecccHHHHHHHHHHhcC-----
Q 025618 151 SKLLHHIKSLGK--EEKEVGIVNPGDIKFGSRKYYRYIGSLTVPPCTEGVIWTIGNKVRTVSREQVRALKEEVHD----- 223 (250)
Q Consensus 151 ~~i~~~l~~i~~--~~~~~~~~~~~~L~~~~~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~iS~~Ql~~f~~~~~~----- 223 (250)
++|++.|+.+.. .+..+..|++.+|+|+..+||+|.||||||||+|+|+|+||++|+.||.+||++||+++..
T Consensus 157 ~~i~~~l~~i~~~~~~~~~~~~~l~~llp~~~~yy~Y~GSLTTPpC~E~V~W~V~~~~i~is~~Ql~~fr~l~~~~~~~~ 236 (259)
T cd03119 157 QKVLDALDSIKTKGKQAPFTNFDPSCLLPASLDYWTYPGSLTTPPLLECVTWIVLKEPISVSSEQMAKFRSLLFNAEGEP 236 (259)
T ss_pred HHHHHHHHHhccCCceeeecCCCHHHHcCCCCCeEEeccccCCCCCCCceEEEEeCCeeeCCHHHHHHHHHHhhccCCCc
Confidence 999999998765 3344556888889998889999999999999999999999999999999999999998753
Q ss_pred --CCCCCCCCCCCCCCCcEEEE
Q 025618 224 --GYEKNARPTNELNGRPIWFY 243 (250)
Q Consensus 224 --~~~~N~Rp~Qpln~R~V~~~ 243 (250)
.+.+|+||+||||||.|+.+
T Consensus 237 ~~~~~~N~Rp~Qpln~R~V~~~ 258 (259)
T cd03119 237 PCPMVDNWRPPQPLKGRKVRAS 258 (259)
T ss_pred cccccCCCCCCCCCCCCEEEec
Confidence 25689999999999999864
No 6
>cd03126 alpha_CA_XII_XIV Carbonic anhydrase alpha, isozymes XII and XIV. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the membrane proteins CA XII and XIV.
Probab=100.00 E-value=6.2e-68 Score=462.53 Aligned_cols=213 Identities=35% Similarity=0.531 Sum_probs=186.2
Q ss_pred CCCCcCCcCCCcccCCCCCCCCcceeeCCceeecCCCCCcee-eccC---CceEEEecCeeEEEEecCCCCceEEcC--e
Q 025618 24 GPSEWGKISPHWRVCGIGKLQSPIDLLNQRVQVLPALGKLKR-DYKP---ALAVVKNRGHDICVWWRGDAGKMHING--T 97 (250)
Q Consensus 24 gP~~W~~l~~~~~~C~~G~~QSPIdI~~~~~~~~~~l~~l~~-~y~~---~~~~l~N~G~tv~v~~~~~~~~~~~~g--~ 97 (250)
||++|+... +.|+ |++||||||.+..+.+++.+.+|.+ +|.. ..++|.|+||||+|.+.+ .+.++| .
T Consensus 1 gp~~W~~~~---~~C~-G~~QSPInI~~~~~~~~~~l~~l~~~~y~~~~~~~~~l~N~Ghtv~v~~~~---~~~~~~l~~ 73 (249)
T cd03126 1 GENSWPKKY---PFCG-GVAQSPIDIHTDILQYDSSLPPLEFHGYNVSGTEQFTLTNNGHTVQLSLPP---TMHIGGLPF 73 (249)
T ss_pred CCCcccccC---CCCC-CCccCCEeEecCceeECCCCCccEEeccccCCCCceEEEECCEeEEEEEcC---CceecCCCc
Confidence 789998854 4798 9999999999988877888999998 6853 257999999999999863 345666 7
Q ss_pred EEEeeeeeecC-------CCCccccccccceeEeeeeecCC------------CCeEEEEEEEecCCCChhHHHHHHHhh
Q 025618 98 IYKLLQCHWHT-------PSEHTINGSSYEMELHLVHLSSD------------GKLAVTGIVYEYGRPDPFLSKLLHHIK 158 (250)
Q Consensus 98 ~Y~l~q~HfH~-------gSEH~idG~~~~~E~H~Vh~~~~------------~~laVl~v~~~~g~~n~~l~~i~~~l~ 158 (250)
+|+|.|||||| ||||+|||++|||||||||+|.+ +++|||||||++|+.|+.++.|++.|.
T Consensus 74 ~Y~l~qfHfHwG~~~~~~gSEH~idG~~y~~E~HlVH~n~~~y~~~~~A~~~~~glaVl~v~~~~g~~n~~~~~i~~~l~ 153 (249)
T cd03126 74 KYTASQLHLHWGQRGSPEGSEHTISGKHFAAELHIVHYNSDKYPDISTAMNKSQGLAVLGILIEVGPFNPSYEKIFSHLH 153 (249)
T ss_pred cEEEEEEEEEeCCCCCCCCceeeecCcccCceEEEEEecCccCCCHHHHhhcCCCeEEEEEEEEecCCChhHHHHHHHhh
Confidence 99999999998 69999999999999999999985 899999999999999999999999999
Q ss_pred hccc--cceeecccCCCCCCCCC-CceEEEeeccCCCCCccceEEeecceeecccHHHHHHHHHHhcC-------CCCCC
Q 025618 159 SLGK--EEKEVGIVNPGDIKFGS-RKYYRYIGSLTVPPCTEGVIWTIGNKVRTVSREQVRALKEEVHD-------GYEKN 228 (250)
Q Consensus 159 ~i~~--~~~~~~~~~~~~L~~~~-~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~iS~~Ql~~f~~~~~~-------~~~~N 228 (250)
.+.. ....+..+++.+|+|.. .+||+|.||||||||+|+|+|+||++|+.||++||++||+++.. .+.+|
T Consensus 154 ~i~~~~~~~~~~~~~l~~llp~~~~~yy~Y~GSLTTPpC~E~V~W~V~~~pi~is~~Ql~~fr~~~~~~~~~~~~~~~~N 233 (249)
T cd03126 154 EVKYKDQKVSVPGFNVQELLPKRLDEYYRYEGSLTTPPCYPSVLWTVFRNPVQISQEQLLALETALYSTEEDESREMVNN 233 (249)
T ss_pred hcccCCceeEcCCCCHHHhCccccCCeEEEeccCcCCCCcCceEEEEeCCceecCHHHHHHHHHHhhhcccCccCcccCC
Confidence 8764 33445568888888865 57999999999999999999999999999999999999997642 25689
Q ss_pred CCCCCCCCCCcEEEE
Q 025618 229 ARPTNELNGRPIWFY 243 (250)
Q Consensus 229 ~Rp~Qpln~R~V~~~ 243 (250)
+||+||||||.|+++
T Consensus 234 ~Rp~QplngR~V~~~ 248 (249)
T cd03126 234 YRQVQPFNERLVFAS 248 (249)
T ss_pred CCCCCCCCCCEEEec
Confidence 999999999999874
No 7
>PF00194 Carb_anhydrase: Eukaryotic-type carbonic anhydrase; InterPro: IPR001148 Carbonic anhydrases (CA: 4.2.1.1 from EC) are zinc metalloenzymes which catalyse the reversible hydration of carbon dioxide to bicarbonate [, ]. CAs have essential roles in facilitating the transport of carbon dioxide and protons in the intracellular space, across biological membranes and in the layers of the extracellular space; they are also involved in many other processes, from respiration and photosynthesis in eukaryotes to cyanate degradation in prokaryotes. There are five known evolutionarily distinct CA families (alpha, beta, gamma, delta and epsilon) that have no significant sequence identity and have structurally distinct overall folds. Some CAs are membrane-bound, while others act in the cytosol; there are several related proteins that lack enzymatic activity. The active site of alpha-CAs is well described, consisting of a zinc ion coordinated through 3 histidine residues and a water molecule/hydroxide ion that acts as a potent nucleophile. The enzyme employs a two-step mechanism: in the first step, there is a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide; in the second step, the active site is regenerated by the ionisation of the zinc-bound water molecule and the removal of a proton from the active site []. Beta- and gamma-CAs also employ a zinc hydroxide mechanism, although at least some beta-class enzymes do not have water directly coordinated to the metal ion. The alpha-CAs are found predominantly in animals but also in bacteria and green algae. There are at least 15 isoforms found in mammals, which can be subdivided into cytosolic CAs (CA-I, CA-II, CA-III, CA-VII and CA XIII), mitochondrial CAs (CA-VA and CA-VB), secreted CAs (CA-VI), membrane-associated (CA-IV, CA-IX, CA-XII and CA-XIV) and those without CA activity, the CA-related proteins (CA-RP VIII, X and XI). The beta-CAs are highly abundant in plants, diatoms, eubacteria and archaea [, ]. The beta-CAs are far more diverse in sequence than other classes, and can be divided into different clades based on sequence identity, with the plant enzymes forming two clades representing dicotyledonous and monocotyledonous plants. Characterisation of these enzymes reveals sharp differences between the beta class, which forms dimers, tetramers, hexamers and octomers, and the alpha and gamma classes, which form strictly monomers and trimers. The gamma-CAs may be the most ancient form of carbonic anhydrases, having evolved long before the alpha class, to which it is more closely related than to the beta-class [, ]. The reaction mechanism of the gamma-class is similar to that of the alpha-class, even though the overall folds are dissimilar and the active site residues differ. The delta-CAs are found in marine algae and dinoflagellates []. The epsilon-CAs are found in prokaryotes such as Thiobacillus neapolitanus (Halothiobacillus neapolitanus) in which it is a component of the carboxysome shell, where it could supply the active sites of RuBisCO in the carboxysome with the high concentrations of carbon dioxide necessary for optimal RuBisCO activity and efficient carbon fixation []. This entry represents a domain found in alpha class carbonic anhydrases. More information about these proteins can be found at Protein of the Month: Carbonic Anhydrase [].; PDB: 3FE4_A 2W2J_A 3B1B_B 2HFW_A 1Z93_A 1Z97_A 3UYQ_A 3UYN_A 1JD0_B 1JCZ_B ....
Probab=100.00 E-value=4.6e-68 Score=465.72 Aligned_cols=223 Identities=36% Similarity=0.667 Sum_probs=180.4
Q ss_pred cccCCCCCCCCCCcCCcCCCcccCCCCCCCCcceeeCCceeecCCCCCceeeccCC-ceEEEecCeeEEEEecCCCCceE
Q 025618 15 FSYKEETGKGPSEWGKISPHWRVCGIGKLQSPIDLLNQRVQVLPALGKLKRDYKPA-LAVVKNRGHDICVWWRGDAGKMH 93 (250)
Q Consensus 15 w~Y~~~~~~gP~~W~~l~~~~~~C~~G~~QSPIdI~~~~~~~~~~l~~l~~~y~~~-~~~l~N~G~tv~v~~~~~~~~~~ 93 (250)
|+|+ + .+||++|+++++ .|. |++||||||.+..+.+.+.+.+|.+.|... ..+|.|+||+++|.+++......
T Consensus 1 W~Y~-~-~~gp~~W~~~~~---~~~-G~~QSPInI~~~~~~~~~~l~~l~~~~~~~~~~~~~N~G~tv~v~~~~~~~~~~ 74 (256)
T PF00194_consen 1 WGYS-G-NNGPENWPKLYP---CCG-GKRQSPININTSEAVYDPSLPPLKFSYYESSAGTLKNNGHTVQVNFDDTNNKPT 74 (256)
T ss_dssp CSSS-T-TTSGGGHHHTSG---GGG-SSS-S-BEE-GGGSEEETTSEEEEEESTTSGEEEEEE-SSSEEEEECTSSSSSE
T ss_pred CcCC-C-CCChhhhhhhCc---ccC-CCccCCEeeCcCccccccCCCCcEEeeccccceEEEecCceEEEEeCCCcccce
Confidence 9994 4 369999999765 465 999999999998888888888999988543 45999999999999976433334
Q ss_pred EcC----eEEEeeeeeecC------CCCccccccccceeEeeeeec------------CCCCeEEEEEEEecCCCChhHH
Q 025618 94 ING----TIYKLLQCHWHT------PSEHTINGSSYEMELHLVHLS------------SDGKLAVTGIVYEYGRPDPFLS 151 (250)
Q Consensus 94 ~~g----~~Y~l~q~HfH~------gSEH~idG~~~~~E~H~Vh~~------------~~~~laVl~v~~~~g~~n~~l~ 151 (250)
+.| .+|+|.|||||| ||||+|||++|||||||||++ .++++||||||+++++.|+.++
T Consensus 75 i~g~~l~~~Y~l~q~HfHwg~~~~~gSEH~idG~~y~~E~H~Vh~~~~~y~~~~~a~~~~~~laVl~v~~~~~~~n~~l~ 154 (256)
T PF00194_consen 75 ISGGPLPGEYRLEQFHFHWGSDNSSGSEHTIDGKRYPMEMHFVHRNSKKYSSFEEASKEPDGLAVLGVFFEIGESNPFLQ 154 (256)
T ss_dssp EEETTESSEEEEEEEEEEESSSTTSSSSSEETTBE-SEEEEEEEEETTTGSSHHHHTTSTTSEEEEEEEEEESS--GHHH
T ss_pred ecCCCccceEEEEEEEEecccCCCCccccchhhhhcccceeeeeeccccccchhhhhhccccceEEEEEeeccccccccc
Confidence 432 679999999998 699999999999999999999 5689999999999999999999
Q ss_pred HHHHHhhhccc--cceeecccCCCCCCCCCCceEEEeeccCCCCCccceEEeecceeecccHHHHHHHHHHhcCC-----
Q 025618 152 KLLHHIKSLGK--EEKEVGIVNPGDIKFGSRKYYRYIGSLTVPPCTEGVIWTIGNKVRTVSREQVRALKEEVHDG----- 224 (250)
Q Consensus 152 ~i~~~l~~i~~--~~~~~~~~~~~~L~~~~~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~iS~~Ql~~f~~~~~~~----- 224 (250)
.|++.|+.+.. ....+..+++.+|+|....||+|.||||||||+|+|+|+||++|+.||.+||++||+++...
T Consensus 155 ~i~~~l~~i~~~~~~~~~~~~~l~~llp~~~~yy~Y~GSLTtPpCtE~V~W~V~~~pi~is~~Ql~~f~~~~~~~~~~~~ 234 (256)
T PF00194_consen 155 PILDALPNIPYPGSSTPIQSFSLSDLLPSTRSYYRYNGSLTTPPCTEGVTWIVFKEPIPISQDQLNKFRKLLGNNNGEEF 234 (256)
T ss_dssp HHHHHGGGGTSTTEEEEEESBBGGGGSCSSSSEEEEEEE-SSTTSSSEEEEEEESSEEEEEHHHHHHHHTSBSSCTTSSE
T ss_pred hhhhhhhhccccccccccccccccccCCCCCCEEEEcccccCCCcceeEEEEEeeeEEEEeHHHHHHHHHHhhcccCCcc
Confidence 99999998865 34566789999999999999999999999999999999999999999999999999987532
Q ss_pred --CCCCCCCCCCCCCCcEEEE
Q 025618 225 --YEKNARPTNELNGRPIWFY 243 (250)
Q Consensus 225 --~~~N~Rp~Qpln~R~V~~~ 243 (250)
+.+|+||+||||||+|+.+
T Consensus 235 ~~~~~N~Rp~QpLn~R~V~~s 255 (256)
T PF00194_consen 235 APLVNNFRPVQPLNGRKVYAS 255 (256)
T ss_dssp CBSSS-S---B--TTS-EEES
T ss_pred ccCCCCcCCCCCCCCcEEEeC
Confidence 5789999999999999874
No 8
>cd03125 alpha_CA_VI Carbonic anhydrase alpha, isozyme VI. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the secreted CA VI, which is found in saliva.
Probab=100.00 E-value=2.3e-67 Score=458.73 Aligned_cols=215 Identities=32% Similarity=0.563 Sum_probs=184.9
Q ss_pred CCCCcCCcCCCcccCCCCCCCCcceeeCCceeecCCCCCcee-ecc--CCceEEEecCeeEEEEecCCCCceEE-cCeEE
Q 025618 24 GPSEWGKISPHWRVCGIGKLQSPIDLLNQRVQVLPALGKLKR-DYK--PALAVVKNRGHDICVWWRGDAGKMHI-NGTIY 99 (250)
Q Consensus 24 gP~~W~~l~~~~~~C~~G~~QSPIdI~~~~~~~~~~l~~l~~-~y~--~~~~~l~N~G~tv~v~~~~~~~~~~~-~g~~Y 99 (250)
+|++|++. |..|+ |++||||||.+..+..++.+++|.+ +|. +..++|.|+||||+|.+.++. .+.. .|.+|
T Consensus 1 ~~~~W~~~---~~~C~-G~~QSPInI~~~~~~~~~~l~~l~~~~y~~~~~~~~i~N~Ghtv~v~~~~~~-~~~~~~~~~Y 75 (249)
T cd03125 1 DESHWPEK---YPACG-GKRQSPIDIQRREVRFNPSLLQLELVGYEKEQGEFTMTNNGHTVQIDLPPTM-SITTGDGTVY 75 (249)
T ss_pred CCCccccc---CcCCC-CCCCCCEeEccCceeECCCCCceEeecccCCCccEEEEECCEEEEEEeCCCc-ccccCCCCCE
Confidence 46799974 56897 9999999999988777788999997 785 446799999999999986432 3322 56899
Q ss_pred EeeeeeecC--------CCCccccccccceeEeeeeecCC-----------CCeEEEEEEEecCC--CChhHHHHHHHhh
Q 025618 100 KLLQCHWHT--------PSEHTINGSSYEMELHLVHLSSD-----------GKLAVTGIVYEYGR--PDPFLSKLLHHIK 158 (250)
Q Consensus 100 ~l~q~HfH~--------gSEH~idG~~~~~E~H~Vh~~~~-----------~~laVl~v~~~~g~--~n~~l~~i~~~l~ 158 (250)
+|.|||||| ||||+|||++|||||||||++.+ +++|||||||++|+ .|+.++.|++.|+
T Consensus 76 ~l~q~HFHWG~~~~~~~gSEH~idG~~yp~E~HlVH~n~~y~~~~~a~~~~~glaVl~v~~~~~~~~~n~~~~~i~~~l~ 155 (249)
T cd03125 76 TAVQMHFHWGGRDSEISGSEHTIDGMRYVAELHIVHYNSKYKSYEEAKDKPDGLAVLAFLYKVGHYAENTYYSDFISKLA 155 (249)
T ss_pred EEEEEEEEecCCCCCCCCccceeccccCCceEEEEEecCCCCCHHHHhcCCCceEEEEEEEEeccCcCCccHHHHHHHHh
Confidence 999999997 79999999999999999999974 88999999999997 8999999999999
Q ss_pred hccc--cceeecccCCCCCCCCC-CceEEEeeccCCCCCccceEEeecceeecccHHHHHHHHHHhcC----CCCCCCCC
Q 025618 159 SLGK--EEKEVGIVNPGDIKFGS-RKYYRYIGSLTVPPCTEGVIWTIGNKVRTVSREQVRALKEEVHD----GYEKNARP 231 (250)
Q Consensus 159 ~i~~--~~~~~~~~~~~~L~~~~-~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~iS~~Ql~~f~~~~~~----~~~~N~Rp 231 (250)
.+.. ....+..+++.+|+|.. .+||+|.||||||||+|+|+|+||++|+.||.+||++||+++.. .+.+|+||
T Consensus 156 ~i~~~~~~~~~~~~~~~~llp~~~~~yy~Y~GSLTTPpC~E~V~W~V~~~pi~Is~~Ql~~fr~~~~~~~~~~l~~N~Rp 235 (249)
T cd03125 156 KIKYAGQTTTLTSLDVRDMLPENLHHYYTYQGSLTTPPCTENVLWFVFDDPVTLSKTQIVKLENTLMDHHNKTIRNDYRR 235 (249)
T ss_pred hcccCCceeecCCCCHHHhCCcCcCCeEEEeccCcCCCCCCceEEEEeCCceecCHHHHHHHHHHhcccCCCcccCCCCC
Confidence 8864 33445568888888865 67999999999999999999999999999999999999986532 25789999
Q ss_pred CCCCCCCcEEEE
Q 025618 232 TNELNGRPIWFY 243 (250)
Q Consensus 232 ~Qpln~R~V~~~ 243 (250)
+||||||.|+++
T Consensus 236 ~Qpln~R~V~~~ 247 (249)
T cd03125 236 TQPLNHRVVEAN 247 (249)
T ss_pred CCCCCCCeEEee
Confidence 999999999864
No 9
>cd03122 alpha_CARP_receptor_like Carbonic anhydrase alpha related protein, receptor_like subfamily. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. This sub-family of carbonic anhydrase-related domains found in tyrosine phosphatase receptors may play a role in cell adhesion.
Probab=100.00 E-value=4.1e-67 Score=458.37 Aligned_cols=215 Identities=28% Similarity=0.565 Sum_probs=184.4
Q ss_pred CCCCcCCcCCCcccCCCCCCCCcceeeCCceeecCCCCCceeeccC---CceEEEecCeeEEEEecCCCCceEEcC----
Q 025618 24 GPSEWGKISPHWRVCGIGKLQSPIDLLNQRVQVLPALGKLKRDYKP---ALAVVKNRGHDICVWWRGDAGKMHING---- 96 (250)
Q Consensus 24 gP~~W~~l~~~~~~C~~G~~QSPIdI~~~~~~~~~~l~~l~~~y~~---~~~~l~N~G~tv~v~~~~~~~~~~~~g---- 96 (250)
||++|+.. |..|++|++||||||.+..+.....+++|.+.|.. ..++|.|+||||+|.+.++.+.+.++|
T Consensus 1 gp~~W~~~---~~~C~~G~~QSPIdI~~~~~~~~~~l~~l~~~~~~~~~~~~~l~N~Ghtv~v~~~~~~~~~~i~gg~l~ 77 (253)
T cd03122 1 NPKHWAKK---YPACGEGRQQSPIDIVEDTQVQRQGLQPLHFDGYEELTASTTLENTGKTVILRLEGNSSDPFVSGGPLL 77 (253)
T ss_pred Cccccccc---CCcCCCCCCCCCEeEeecceeccCCCCCeEEeccCCCCCceEEEECCeEEEEEecCCCCceEEeCCCCC
Confidence 78999984 55799999999999988544333338889987633 568999999999999875445677776
Q ss_pred eEEEeeeeeecC------CCCccccccccceeEeeeeecCC-----------CCeEEEEEEEecC-CCChhHHHHHHHhh
Q 025618 97 TIYKLLQCHWHT------PSEHTINGSSYEMELHLVHLSSD-----------GKLAVTGIVYEYG-RPDPFLSKLLHHIK 158 (250)
Q Consensus 97 ~~Y~l~q~HfH~------gSEH~idG~~~~~E~H~Vh~~~~-----------~~laVl~v~~~~g-~~n~~l~~i~~~l~ 158 (250)
.+|+|.|||||| ||||+|||++|||||||||++.+ +++|||||||++| ..|+++++|++.+.
T Consensus 78 ~~Y~l~q~HFHwG~~~~~gSEH~idg~~yp~E~H~VH~n~~~~~~~~A~~~~~~laVv~vl~~~g~~~n~~l~~i~~~l~ 157 (253)
T cd03122 78 GRYKFSEITFHWGTCNSDGSEHSIDGHKFPLEMQILHRNTDFFDSFEAIKSPGGVLALAYLFELSHEDNPFLDPIIEGLR 157 (253)
T ss_pred CcEEEEEEEEEeCCCCCCCCceeecCccCcceEEEEEEcCCCCCHHHHhhcCCCeEEEEEEEEEecCCCHhHHHHHHHHH
Confidence 579999999997 68999999999999999999976 6999999999999 67999999999999
Q ss_pred hccc--cceeecccCCCCCCCC-CCceEEEeeccCCCCCccceEEeecceeecccHHHHHHHHHHhcCC---------CC
Q 025618 159 SLGK--EEKEVGIVNPGDIKFG-SRKYYRYIGSLTVPPCTEGVIWTIGNKVRTVSREQVRALKEEVHDG---------YE 226 (250)
Q Consensus 159 ~i~~--~~~~~~~~~~~~L~~~-~~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~iS~~Ql~~f~~~~~~~---------~~ 226 (250)
.+.. +...+..|++.+|+|. ...||+|.||||||||+|+|+|+||++|+.||.+||++||+++... +.
T Consensus 158 ~i~~~~~~~~~~~~~l~~llp~~~~~yy~Y~GSLTTPpC~E~V~W~V~~~pi~Is~~Ql~~fr~l~~~~~~~~~~~~~~~ 237 (253)
T cd03122 158 NVSRPGKEVELPPFPLSDLLPPFTDKYYSYEGSLTTPPCSETVEWIVFREPVPISSRQLEAFRELLTRRQDGVMSGDYLP 237 (253)
T ss_pred hcCCCCcEEEcCCCCHHHHhccccCCeEEEeeeccCCCCcCceEEEEeCceeecCHHHHHHHHHHhcccccccccCcccc
Confidence 8865 3344556888888875 4789999999999999999999999999999999999999987532 56
Q ss_pred CCCCCCCCCCCCcEE
Q 025618 227 KNARPTNELNGRPIW 241 (250)
Q Consensus 227 ~N~Rp~Qpln~R~V~ 241 (250)
+|+||+||||||.|+
T Consensus 238 ~N~Rp~Qpln~R~V~ 252 (253)
T cd03122 238 NNGRPQQPLGSRTVF 252 (253)
T ss_pred CCCcCCCCCCCCEec
Confidence 899999999999986
No 10
>cd03123 alpha_CA_VI_IX_XII_XIV Carbonic anhydrase alpha, isozymes VI, IX, XII and XIV. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Alpha CAs are mostly monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the secreted CA VI, which is found in saliva, for example, and the membrane proteins CA IX, XII, and XIV.
Probab=100.00 E-value=8.8e-67 Score=455.02 Aligned_cols=215 Identities=37% Similarity=0.569 Sum_probs=183.9
Q ss_pred CCCCcCCcCCCcccCCCCCCCCcceeeCCceeecCCCCCcee-eccC--C-ceEEEecCeeEEEEecCCCCceEE-cCeE
Q 025618 24 GPSEWGKISPHWRVCGIGKLQSPIDLLNQRVQVLPALGKLKR-DYKP--A-LAVVKNRGHDICVWWRGDAGKMHI-NGTI 98 (250)
Q Consensus 24 gP~~W~~l~~~~~~C~~G~~QSPIdI~~~~~~~~~~l~~l~~-~y~~--~-~~~l~N~G~tv~v~~~~~~~~~~~-~g~~ 98 (250)
+|++|+++.+ .|+ |++||||||.+..+..++.+++|++ +|.. . .++|.|+||||+|.+.++ ..+.. .+.+
T Consensus 1 ~p~~W~~~~~---~C~-G~~QSPInI~~~~~~~~~~l~~l~~~~y~~~~~~~~~i~N~Ghtv~v~~~~~-~~~~gg~~~~ 75 (248)
T cd03123 1 GEDHWPKKYP---ACG-GKRQSPIDIQTDIVQFDPSLPPLELVGYDLPGTEEFTLTNNGHTVQLSLPPT-MHIRGGPGTE 75 (248)
T ss_pred CCCcccccCc---CCC-CCCCCCEeEeccceeecCCCCcceecccccCCCCceEEEECCeeEEEEeCCC-ccccCCCCCC
Confidence 6889998654 797 9999999999988877788999998 6753 2 579999999999998643 12222 1368
Q ss_pred EEeeeeeecC-------CCCccccccccceeEeeeeecC------------CCCeEEEEEEEecC-CCChhHHHHHHHhh
Q 025618 99 YKLLQCHWHT-------PSEHTINGSSYEMELHLVHLSS------------DGKLAVTGIVYEYG-RPDPFLSKLLHHIK 158 (250)
Q Consensus 99 Y~l~q~HfH~-------gSEH~idG~~~~~E~H~Vh~~~------------~~~laVl~v~~~~g-~~n~~l~~i~~~l~ 158 (250)
|+|.|||||| ||||+|||++|||||||||++. ++++|||||||++| ..|+.++.|++.|.
T Consensus 76 Y~l~qfHfHwG~~~~~~gSEH~idG~~yp~E~HlVh~n~~~y~~~~~A~~~~~~laVl~v~~~~~~~~n~~~~~i~~~l~ 155 (248)
T cd03123 76 YTAAQLHLHWGGRGSLSGSEHTIDGIRFAAELHIVHYNSDKYSSFDEAADKPDGLAVLAILIEVGYPENTYYEKIISHLH 155 (248)
T ss_pred EEEEEEEEeeCCCCCCCCccceecCccCcceeEEEEEcccccCCHHHHhcCCCCeEEEEEEEEecCCCCccHHHHHHHHH
Confidence 9999999997 7999999999999999999998 48999999999999 68999999999999
Q ss_pred hccc--cceeecccCCCCCCCCC-CceEEEeeccCCCCCccceEEeecceeecccHHHHHHHHHHhcC----CCCCCCCC
Q 025618 159 SLGK--EEKEVGIVNPGDIKFGS-RKYYRYIGSLTVPPCTEGVIWTIGNKVRTVSREQVRALKEEVHD----GYEKNARP 231 (250)
Q Consensus 159 ~i~~--~~~~~~~~~~~~L~~~~-~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~iS~~Ql~~f~~~~~~----~~~~N~Rp 231 (250)
.+.. ....+..|++.+|+|.. ..||+|.||||||||+|+|+|+||++|+.||.+||++||+++.. .+.+|+||
T Consensus 156 ~i~~~~~~~~~~~~~l~~llp~~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~iS~~Ql~~fr~~l~~~~~~~~~~N~Rp 235 (248)
T cd03123 156 EIKYKGQETTVPGFNVRELLPEDLSHYYRYEGSLTTPPCYESVLWTVFRDPVTLSKEQLETLENTLMDTHNKTLQNNYRA 235 (248)
T ss_pred hhCcCCcEEecCCCCHHHhcCCCcCCeEEEeccCcCCCCcCcEEEEEeCCceecCHHHHHHHHHHhhccCCCcccCCCCC
Confidence 8865 33445568888888865 57999999999999999999999999999999999999986542 35789999
Q ss_pred CCCCCCCcEEEE
Q 025618 232 TNELNGRPIWFY 243 (250)
Q Consensus 232 ~Qpln~R~V~~~ 243 (250)
+||||||.|+++
T Consensus 236 ~Qpln~R~V~~~ 247 (248)
T cd03123 236 TQPLNGRVVEAS 247 (248)
T ss_pred CCCCCCCEEEec
Confidence 999999999864
No 11
>cd03150 alpha_CA_IX Carbonic anhydrase alpha, isozyme IX. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Alpha CAs are strictly monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the membrane protein CA IX. CA IX is functionally implicated in tumor growth and survival. CA IX is mainly present in solid tumors and its expression in normal tissues is limited t
Probab=100.00 E-value=1.4e-66 Score=453.40 Aligned_cols=215 Identities=34% Similarity=0.591 Sum_probs=184.6
Q ss_pred CCCCcCCcCCCcccCCCCCCCCcceeeCCceeecCCCCCcee-ecc--C-CceEEEecCeeEEEEecCCCCceEEc-CeE
Q 025618 24 GPSEWGKISPHWRVCGIGKLQSPIDLLNQRVQVLPALGKLKR-DYK--P-ALAVVKNRGHDICVWWRGDAGKMHIN-GTI 98 (250)
Q Consensus 24 gP~~W~~l~~~~~~C~~G~~QSPIdI~~~~~~~~~~l~~l~~-~y~--~-~~~~l~N~G~tv~v~~~~~~~~~~~~-g~~ 98 (250)
||++|+.+++ .|+ |++||||||.+..+..++.+++|.+ +|. + ..++|.|+||||+|.+.++. .+..+ +.+
T Consensus 1 ~~~~W~~~~~---~c~-G~~QSPIdI~~~~~~~~~~l~~l~~~~y~~~~~~~~~i~N~Ghtv~v~~~~~~-~~~~g~~~~ 75 (247)
T cd03150 1 GQPPWPSVSP---ACA-GRFQSPVDIRPHLVAFCPALRPLELLGFDLPPSPSLRLLNNGHTVQLSLPSGL-RMALGPGQE 75 (247)
T ss_pred CCCcccccCC---CCC-CCCcCCEeeccCceeECCCCCCceeeccccCCCCceEEEECCEEEEEEEeccc-ccccCCCCc
Confidence 5789999765 698 9999999999988877888999987 564 2 25799999999999986432 23322 589
Q ss_pred EEeeeeeecC------CCCccccccccceeEeeeeecC-----------CCCeEEEEEEEecCC-CChhHHHHHHHhhhc
Q 025618 99 YKLLQCHWHT------PSEHTINGSSYEMELHLVHLSS-----------DGKLAVTGIVYEYGR-PDPFLSKLLHHIKSL 160 (250)
Q Consensus 99 Y~l~q~HfH~------gSEH~idG~~~~~E~H~Vh~~~-----------~~~laVl~v~~~~g~-~n~~l~~i~~~l~~i 160 (250)
|+|.|||||| ||||+|||++|||||||||++. ++++|||||||++|. .|+.++.|++.+..+
T Consensus 76 Y~l~QfHfHwG~~~~~gSEH~idg~~yp~E~HlVH~n~~y~~~~~A~~~~~glaVl~v~~~~g~~~n~~l~~i~~~l~~i 155 (247)
T cd03150 76 YRALQLHLHWGAAGRPGSEHTVDGHRFPAEIHVVHLSTAFANLDEALGRPGGLAVLAAFLAEGLHENSAYEQLLSRLSEI 155 (247)
T ss_pred EEEEEEEEEeCCCCCCCcceeeCCcccchhhheeeecccCCCHHHHhcCCCCcEEEEEEEEecCCCCHHHHHHHHHHHhh
Confidence 9999999999 8999999999999999999986 589999999999995 799999999999988
Q ss_pred cc--cceeecccCCCCCCCCC-CceEEEeeccCCCCCccceEEeecceeecccHHHHHHHHHHhcC----CCCCCCCCCC
Q 025618 161 GK--EEKEVGIVNPGDIKFGS-RKYYRYIGSLTVPPCTEGVIWTIGNKVRTVSREQVRALKEEVHD----GYEKNARPTN 233 (250)
Q Consensus 161 ~~--~~~~~~~~~~~~L~~~~-~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~iS~~Ql~~f~~~~~~----~~~~N~Rp~Q 233 (250)
.. +...+..+++.+|+|.. ..||+|.||||||||+|+|+|+||++|+.||.+||++||+++.. .+.+|+||+|
T Consensus 156 ~~~~~~~~~~~~~l~~llp~~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~is~~Ql~~fr~~l~~~~~~~l~~N~Rp~Q 235 (247)
T cd03150 156 SEEESETVVPGLDVSALLPSDLSRYFRYEGSLTTPPCAQGVIWTVFNQTVRLSAKQLHTLSDSLWGPHDSRLQLNFRATQ 235 (247)
T ss_pred CCCCceeecCCCCHHHHcCcccCCEEEEeeeccCCCCCCceEEEEeCceeecCHHHHHHHHHHHhccCCCcccCCCCCCC
Confidence 65 33445568888888865 57999999999999999999999999999999999999986642 2578999999
Q ss_pred CCCCCcEEEE
Q 025618 234 ELNGRPIWFY 243 (250)
Q Consensus 234 pln~R~V~~~ 243 (250)
|||||.|+++
T Consensus 236 pln~R~V~~~ 245 (247)
T cd03150 236 PLNGRKIEAS 245 (247)
T ss_pred CCCCCeEEee
Confidence 9999999875
No 12
>cd03149 alpha_CA_VII Carbonic anhydrase alpha, CA isozyme VII_like subgroup. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozyme VII. CA VII is the most active cytosolic enzyme after CA II, and may be highly expressed in the brain. Human CA VII may be a target of antiepileptic sulfonamides/sulfamates.
Probab=100.00 E-value=1.3e-65 Score=444.66 Aligned_cols=203 Identities=33% Similarity=0.506 Sum_probs=178.6
Q ss_pred CCCCCcceeeCCceeecCCCCCceeeccC-CceEEEecCeeEEEEecCCCCceEEcC----eEEEeeeeeecC------C
Q 025618 41 GKLQSPIDLLNQRVQVLPALGKLKRDYKP-ALAVVKNRGHDICVWWRGDAGKMHING----TIYKLLQCHWHT------P 109 (250)
Q Consensus 41 G~~QSPIdI~~~~~~~~~~l~~l~~~y~~-~~~~l~N~G~tv~v~~~~~~~~~~~~g----~~Y~l~q~HfH~------g 109 (250)
|++||||||.+..+.+++.+.+|.++|.. ..+++.|+||||++.+.++.+.+.+.| .+|+|.|||||| |
T Consensus 1 G~~QSPInI~~~~~~~~~~l~~l~~~y~~~~~~~~~N~Ghtv~v~~~~~~~~~~~~gg~l~~~Y~l~q~HfHwG~~~~~g 80 (236)
T cd03149 1 GNRQSPIDIVSSEAVYDPKLKPLSLSYDPCTSLSISNNGHSVMVEFDDSDDKTVITGGPLENPYRLKQFHFHWGAKHGSG 80 (236)
T ss_pred CCCCCCeeEccCceEECCCCCceEeecCCCcceEEEECCEEEEEEecCCCCceEEecCCCCCcEEEEEEEEecCCCCCCC
Confidence 78999999999888878889999999964 367999999999999865334455554 589999999997 7
Q ss_pred CCccccccccceeEeeeeecCC------------CCeEEEEEEEecCCCChhHHHHHHHhhhccc--cceeecccCCCCC
Q 025618 110 SEHTINGSSYEMELHLVHLSSD------------GKLAVTGIVYEYGRPDPFLSKLLHHIKSLGK--EEKEVGIVNPGDI 175 (250)
Q Consensus 110 SEH~idG~~~~~E~H~Vh~~~~------------~~laVl~v~~~~g~~n~~l~~i~~~l~~i~~--~~~~~~~~~~~~L 175 (250)
|||+|||++|||||||||++.+ +|+|||||||++|+.|+.++.|++.|+.+.. ....+..+++.+|
T Consensus 81 SEH~idg~~yp~E~HlVH~n~~~y~~~~~A~~~~~glaVlgv~~~~g~~n~~l~~i~~~l~~i~~~~~~~~~~~~~~~~l 160 (236)
T cd03149 81 SEHTVDGKTFPSELHLVHWNAKKYKSFGEAAAAPDGLAVLGVFLETGDEHPGLNRLTDALYMVRFKGTKAQFLDFNPKCL 160 (236)
T ss_pred CceeecCeeccceeeeeEecccccCCHHHHhhccCCcEEEEEEEEecCCCccHHHHHHHhhhcccCCcceeeccCCHHHH
Confidence 9999999999999999999864 8999999999999999999999999998864 3344556888888
Q ss_pred CCCCCceEEEeeccCCCCCccceEEeecceeecccHHHHHHHHHHhcC-------CCCCCCCCCCCCCCCcEEEE
Q 025618 176 KFGSRKYYRYIGSLTVPPCTEGVIWTIGNKVRTVSREQVRALKEEVHD-------GYEKNARPTNELNGRPIWFY 243 (250)
Q Consensus 176 ~~~~~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~iS~~Ql~~f~~~~~~-------~~~~N~Rp~Qpln~R~V~~~ 243 (250)
+|+...||+|.||||||||+|+|+|+||++|+.||.+||++||+++.. .+.+|+||+||||||.|+.+
T Consensus 161 lp~~~~yy~Y~GSLTTPpC~E~V~W~V~~~pi~is~~Ql~~fr~l~~~~~~~~~~~l~~N~Rp~Q~ln~R~v~~~ 235 (236)
T cd03149 161 LPKSLDYWTYPGSLTTPPLNESVTWIVLKEPIPVSEKQMGKFRELLFTSEEDQRNHMVNNFRPPQPLKGRTVRAS 235 (236)
T ss_pred CCCCCCeEEecccCcCCCCCCceEEEEeCceeeCCHHHHHHHHHhhhhccCcccccccCCCcCCCCCCCCEEEec
Confidence 998889999999999999999999999999999999999999998742 25689999999999999864
No 13
>cd03118 alpha_CA_V Carbonic anhydrase alpha, CA isozyme V_like subgroup. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozyme V. CA V is the mitochondrial isozyme, which may play a role in gluconeogenesis and ureagenesis and possibly also in lipogenesis.
Probab=100.00 E-value=1.6e-65 Score=444.09 Aligned_cols=203 Identities=32% Similarity=0.465 Sum_probs=178.3
Q ss_pred CCCCCcceeeCCceeecCCCCCceeeccCC-ceEEEecCeeEEEEecCCCC-ceEEcC---eEEEeeeeeecC------C
Q 025618 41 GKLQSPIDLLNQRVQVLPALGKLKRDYKPA-LAVVKNRGHDICVWWRGDAG-KMHING---TIYKLLQCHWHT------P 109 (250)
Q Consensus 41 G~~QSPIdI~~~~~~~~~~l~~l~~~y~~~-~~~l~N~G~tv~v~~~~~~~-~~~~~g---~~Y~l~q~HfH~------g 109 (250)
|++||||||.+..+.+++.+++|.++|... .++|.|+||||++.+.++.. .+..+| .+|+|.|||||| |
T Consensus 1 G~~QSPIdI~~~~~~~~~~l~~l~~~y~~~~~~~l~N~Ghtv~v~~~~~~~~~~~~gg~l~~~Y~l~q~HfHwG~~~~~g 80 (236)
T cd03118 1 GTRQSPINIQWRDSVYDPQLAPLRVSYDPATCLYIWNNGYSFQVEFDDSTDKSGISGGPLENHYRLKQFHFHWGANNEWG 80 (236)
T ss_pred CCcCCCeeEecCceeECCCCCceEEecCCCCceEEEECCEEEEEEecCCCCceEEecCCCCCcEEEEEEEEEECCCCCCC
Confidence 789999999998877788899999999644 46999999999999865332 334455 599999999999 9
Q ss_pred CCccccccccceeEeeeeecC------------CCCeEEEEEEEecCCCChhHHHHHHHhhhccc--cceeecccCCCCC
Q 025618 110 SEHTINGSSYEMELHLVHLSS------------DGKLAVTGIVYEYGRPDPFLSKLLHHIKSLGK--EEKEVGIVNPGDI 175 (250)
Q Consensus 110 SEH~idG~~~~~E~H~Vh~~~------------~~~laVl~v~~~~g~~n~~l~~i~~~l~~i~~--~~~~~~~~~~~~L 175 (250)
|||+|||++|||||||||++. ++++|||||||++|+.|+.++.|++.++.+.. ....+..|++.+|
T Consensus 81 SEH~idg~~~p~E~HlVH~n~~~y~~~~~A~~~~~~laVvgv~~~~g~~n~~l~~i~~~l~~i~~~~~~~~~~~~~~~~l 160 (236)
T cd03118 81 SEHTVDGHTYPAELHLVHWNSVKYENFEEAVMEENGLAVIGVFLKLGAHHEGLQKLVDALPEVRHKDTVVEFNPFDPSCL 160 (236)
T ss_pred CceEECCEeccceeeEEEEcccccCCHHHHhcCCCCeEEEEEEEEecCcCccHHHHHHHHHhcCcCCceeeecCCCHHHH
Confidence 999999999999999999997 48999999999999989999999999998865 3344556888889
Q ss_pred CCCCCceEEEeeccCCCCCccceEEeecceeecccHHHHHHHHHHhcC-------CCCCCCCCCCCCCCCcEEEE
Q 025618 176 KFGSRKYYRYIGSLTVPPCTEGVIWTIGNKVRTVSREQVRALKEEVHD-------GYEKNARPTNELNGRPIWFY 243 (250)
Q Consensus 176 ~~~~~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~iS~~Ql~~f~~~~~~-------~~~~N~Rp~Qpln~R~V~~~ 243 (250)
+|+...||+|.||||||||+|+|+|+||++|+.||.+||++||+++.. .+.+|+||+||||||.|+++
T Consensus 161 lp~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~is~~Ql~~fr~l~~~~~~~~~~~l~~N~Rp~Qpln~R~V~~~ 235 (236)
T cd03118 161 LPACRDYWTYPGSLTTPPLTESVTWIIQKQPIEVSPSQLSVFRTLLFTSRGEEEKVMVNNFRPLQPLMNRKVRSS 235 (236)
T ss_pred cccCCCEEEecCcccCCCCcCceEEEEeCccccCCHHHHHHHHHHhhhccCCccccccCCCCCCCCCCCCEEEec
Confidence 888889999999999999999999999999999999999999998742 15689999999999999864
No 14
>cd03120 alpha_CARP_VIII Carbonic anhydrase alpha related protein, group VIII. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. CARP VIII may play roles in various biological processes of the central nervous system, and could be involved in protein-protein interactions. CARP VIII has been shown to bind inositol 1,4,5-triphosphate (IP3) receptor type I (IP3RI), reducing the affinity of the receptor for IP3. IP3RI is an intracellular IP3-gated Ca2+ channel located on intracellular Ca2+ stores. IP3RI converts IP3 signaling into Ca2+ signaling thereby participating in a variety of cell functions.
Probab=100.00 E-value=4.8e-65 Score=446.00 Aligned_cols=212 Identities=30% Similarity=0.491 Sum_probs=181.7
Q ss_pred CCcCCcCCCcccCCCCCCCCcceeeCCceeecCCCC--CceeeccCC-ceEEEecCeeEEEEecCCCCceEEc-----Ce
Q 025618 26 SEWGKISPHWRVCGIGKLQSPIDLLNQRVQVLPALG--KLKRDYKPA-LAVVKNRGHDICVWWRGDAGKMHIN-----GT 97 (250)
Q Consensus 26 ~~W~~l~~~~~~C~~G~~QSPIdI~~~~~~~~~~l~--~l~~~y~~~-~~~l~N~G~tv~v~~~~~~~~~~~~-----g~ 97 (250)
++|+.+.+ .|. |++||||||.+..+..++.+. +|.++|.+. .++|.|+|||++|.+.++ ....+ |.
T Consensus 2 ~~W~~~~~---~c~-G~~QSPInI~~~~~~~~~~~~~~~l~~~y~~~~~~~l~N~Ghtv~v~~~~~--~~~~gg~l~~~~ 75 (256)
T cd03120 2 VEWGLLFP---EAN-GEYQSPINLNSREARYDPSLLEVRLSPNYVVCRDCEVINDGHTIQIILKSK--SVLSGGPLPQGH 75 (256)
T ss_pred CcccccCC---CCC-CCcCCCccCccCceEECCCCCcccceeccCCCCceEEEECCeEEEEEeCCC--ceeecCCCCCCc
Confidence 48999876 497 999999999998877777776 467777543 579999999999998642 22222 46
Q ss_pred EEEeeeeeecC------CCCccccccccceeEeeeeecCC------------CCeEEEEEEEecCCCChhHHHHHHHhhh
Q 025618 98 IYKLLQCHWHT------PSEHTINGSSYEMELHLVHLSSD------------GKLAVTGIVYEYGRPDPFLSKLLHHIKS 159 (250)
Q Consensus 98 ~Y~l~q~HfH~------gSEH~idG~~~~~E~H~Vh~~~~------------~~laVl~v~~~~g~~n~~l~~i~~~l~~ 159 (250)
+|+|.|||||| ||||+|||++|||||||||++.+ +++|||||||++|+.|+.|+.|++.|+.
T Consensus 76 ~Y~l~q~HFHwG~~~~~gSEH~idG~~yp~E~HlVH~n~~~y~~~~~A~~~~~glaVlgv~~~~g~~n~~l~~i~~~l~~ 155 (256)
T cd03120 76 EFELAEVRFHWGRENQRGSEHTVNFKAFPMELHLIHWNSTLYSSLEEAMGKPHGIAIIALFVQIGKEHVGLKAVTEILQD 155 (256)
T ss_pred eEEEEEEEEEeCCCCCCCCceeecCccccceEEEEEecCcccCCHHHHhcCCCceEEEEEEEeecCCCHhHHHHHHHhHh
Confidence 89999999998 59999999999999999999974 6999999999999999999999999998
Q ss_pred ccc--cceeecccCCCCCCCC--CCceEEEeeccCCCCCccceEEeecceeecccHHHHHHHHHHhcC------------
Q 025618 160 LGK--EEKEVGIVNPGDIKFG--SRKYYRYIGSLTVPPCTEGVIWTIGNKVRTVSREQVRALKEEVHD------------ 223 (250)
Q Consensus 160 i~~--~~~~~~~~~~~~L~~~--~~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~iS~~Ql~~f~~~~~~------------ 223 (250)
+.. +...+..+++.+|+|. ...||+|.||||||||+|+|+|+||++|+.||.+||++||+++..
T Consensus 156 i~~~~~~~~~~~~~~~~llp~~~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~IS~~Ql~~fr~l~~~~~~~~~~~~~~~ 235 (256)
T cd03120 156 IQYKGKSKTIPCFNPNTLLPDPLLRDYWVYEGSLTTPPCSEGVTWILFRYPLTISQSQIEEFRRLRTHVKGAELVEGCDG 235 (256)
T ss_pred hccCCceeeecCCCHHHHCCCcCcCCeEEEeeecCCCCCCCCeEEEEeCCeeecCHHHHHHHHHHHhccccccccccccc
Confidence 864 3344556888888886 478999999999999999999999999999999999999998752
Q ss_pred CCCCCCCCCCCCCCCcEEEE
Q 025618 224 GYEKNARPTNELNGRPIWFY 243 (250)
Q Consensus 224 ~~~~N~Rp~Qpln~R~V~~~ 243 (250)
.+.+|+||+||||||.|+.+
T Consensus 236 ~l~~N~Rp~Qpln~R~v~~~ 255 (256)
T cd03120 236 LLGDNFRPTQPLSDRVIRAA 255 (256)
T ss_pred cccCCCCCCCCCCCCEEEec
Confidence 14689999999999999864
No 15
>KOG0382 consensus Carbonic anhydrase [General function prediction only]
Probab=100.00 E-value=1.4e-64 Score=441.23 Aligned_cols=227 Identities=39% Similarity=0.614 Sum_probs=193.6
Q ss_pred CCcccCCCCCCCCCCcCCcCCCcccCCCCCCCCcceeeCCceeecC-CCCCceeeccC-CceEEEecCeeEEEEecCCCC
Q 025618 13 TPFSYKEETGKGPSEWGKISPHWRVCGIGKLQSPIDLLNQRVQVLP-ALGKLKRDYKP-ALAVVKNRGHDICVWWRGDAG 90 (250)
Q Consensus 13 ~~w~Y~~~~~~gP~~W~~l~~~~~~C~~G~~QSPIdI~~~~~~~~~-~l~~l~~~y~~-~~~~l~N~G~tv~v~~~~~~~ 90 (250)
..|.|. ....||..|+.+.|. |+ |++||||||....+.+++ .+.++.++|.. ....+.|||++..|.+....+
T Consensus 3 ~~~~~~-~~~~gp~~W~~~~~~---~~-g~~QSPIdi~~~~~~~~~~~l~~~~~~~~~~~~~~~~nng~~~~v~~~~~~~ 77 (262)
T KOG0382|consen 3 EFWYYE-KGNKGPEHWGKLYPE---WK-GKRQSPIDIKRSQIVYDPDPLKPLRLSYEYKPCNAVLNNGHSRGVDIMLKGG 77 (262)
T ss_pred ceeEEe-ccccCCccccccCcC---cC-CCccCCccCccceeeecCccccceeeecccCcceEEEeCCceEEEEeecCCC
Confidence 457774 444599999998775 66 999999999999999988 67777777754 456899999666665543332
Q ss_pred ceEEcC----e-EEEeeeeeecC------CCCccccccccceeEeeeeec-----------CCCCeEEEEEEEecCC-CC
Q 025618 91 KMHING----T-IYKLLQCHWHT------PSEHTINGSSYEMELHLVHLS-----------SDGKLAVTGIVYEYGR-PD 147 (250)
Q Consensus 91 ~~~~~g----~-~Y~l~q~HfH~------gSEH~idG~~~~~E~H~Vh~~-----------~~~~laVl~v~~~~g~-~n 147 (250)
...+.| . .|++.|+|||| ||||||||++|+||||+||+| .++|+|||||||++|+ .|
T Consensus 78 ~~~i~gg~l~~~~y~~~q~hfHWg~~~~~GSEHti~g~~f~~ElHlVH~n~~y~~~~eA~~~p~GlAVv~vf~k~g~~~n 157 (262)
T KOG0382|consen 78 KPEITGGPLPGIRYRLEQLHFHWGSPDSKGSEHTINGRRFPAELHLVHWNTKYENFKEALSKPDGLAVVGVFLKIGKEEN 157 (262)
T ss_pred CcceecCCCCCcceeEEEeEeecCCCCCCCCceecCCeecccEEEEEEeccccCCHHHHhcCCCcEEEEEEeecccCCCC
Confidence 333333 3 79999999999 699999999999999999999 5799999999999997 79
Q ss_pred hhHHHHHHHhhhccc--cceeecccCCCCCCCC-CCceEEEeeccCCCCCccceEEeecceeecccHHHHHHHHHHhcCC
Q 025618 148 PFLSKLLHHIKSLGK--EEKEVGIVNPGDIKFG-SRKYYRYIGSLTVPPCTEGVIWTIGNKVRTVSREQVRALKEEVHDG 224 (250)
Q Consensus 148 ~~l~~i~~~l~~i~~--~~~~~~~~~~~~L~~~-~~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~iS~~Ql~~f~~~~~~~ 224 (250)
++|++|++.|..|.. +.+.+..|++..|+|. ..+||+|.||||||||+|+|+|+||++|+.||.+||.+||.++...
T Consensus 158 ~~l~~l~~~L~~I~~k~~~~~l~~f~~~~llp~~~~~y~tY~GSLTTPPC~E~VtW~V~~~p~~is~~Ql~~~r~l~~~~ 237 (262)
T KOG0382|consen 158 PFLSKLTDALKRIKYKGQSTTLPGFDPSELLPKSTRDYYTYEGSLTTPPCSESVTWTVFREPVTVSREQLEKFRNLLFDE 237 (262)
T ss_pred hhHHHHHHHhhccccCCcccccCCCCHHHhcCccCCceEEEEeeccCCCCCCCEEEEEcCceeecCHHHHHHHHHHhhCc
Confidence 999999999999987 4455666999999887 8999999999999999999999999999999999999999998654
Q ss_pred ----CCCCCCCCCCCCCCcEEEEC
Q 025618 225 ----YEKNARPTNELNGRPIWFYS 244 (250)
Q Consensus 225 ----~~~N~Rp~Qpln~R~V~~~~ 244 (250)
+.+|+||+||||+|.|+++.
T Consensus 238 ~~~~~~~N~Rp~Qpln~R~V~~~~ 261 (262)
T KOG0382|consen 238 EGEPLVNNFRPLQPLNGRVVRASF 261 (262)
T ss_pred ccccccccCCcCcCCCCCeEeccc
Confidence 78999999999999999875
No 16
>PLN02179 carbonic anhydrase
Probab=100.00 E-value=1.5e-64 Score=436.11 Aligned_cols=198 Identities=58% Similarity=1.120 Sum_probs=174.2
Q ss_pred CCCCcccCCCCCCCCCCcCCcCCCcccCCCCCCCCcceeeCCceeecCCCCCceeeccCCceEEEecCeeEEEEecCCCC
Q 025618 11 DETPFSYKEETGKGPSEWGKISPHWRVCGIGKLQSPIDLLNQRVQVLPALGKLKRDYKPALAVVKNRGHDICVWWRGDAG 90 (250)
Q Consensus 11 ~~~~w~Y~~~~~~gP~~W~~l~~~~~~C~~G~~QSPIdI~~~~~~~~~~l~~l~~~y~~~~~~l~N~G~tv~v~~~~~~~ 90 (250)
.+.+|+|+.++.+||++|++++++|..|++|++||||||.+..+.... ..+|.+.|.+...+|.|+|||+++.+.++.+
T Consensus 33 ~~~~w~Y~~~~~~Gp~~W~~l~~~~~~C~~G~~QSPIdI~~~~~~~~~-~~~l~~~y~~~~~~i~N~Ghtv~v~~~~~~~ 111 (235)
T PLN02179 33 NKPLFTYKQKTEKGPAEWGKLNPQWKVCSTGKYQSPIDLTDERVSLIH-DQALSRHYKPAPAVIQSRGHDVMVSWKGDAG 111 (235)
T ss_pred CCCCCCcCCCCCCCchhhhhcChhhhhccCCCcCCCEEeecccccccc-CCCcccccCCccEEEEECCeEEEEEecCCCC
Confidence 348899965456799999999999999999999999999886543222 2457778877788999999999999875556
Q ss_pred ceEEcCeEEEeeeeeecCCCCccccccccceeEeeeeecCCCCeEEEEEEEecCCCChhHHHHHHHhhhccccceeeccc
Q 025618 91 KMHINGTIYKLLQCHWHTPSEHTINGSSYEMELHLVHLSSDGKLAVTGIVYEYGRPDPFLSKLLHHIKSLGKEEKEVGIV 170 (250)
Q Consensus 91 ~~~~~g~~Y~l~q~HfH~gSEH~idG~~~~~E~H~Vh~~~~~~laVl~v~~~~g~~n~~l~~i~~~l~~i~~~~~~~~~~ 170 (250)
.+.++|.+|+|.||||||||||+|||++|||||||||++.++++|||||||++|+.|+++++|++.++.+..+...+..+
T Consensus 112 ~~~i~g~~Y~L~QfHFH~gSEH~InG~~yp~E~H~VH~n~~g~laVlgvl~~~g~~n~~l~~il~~l~~~~~~~~~~~~l 191 (235)
T PLN02179 112 KITIHQTDYKLVQCHWHSPSEHTINGTSYDLELHMVHTSASGKTAVVGVLYKLGEPDEFLTKLLNGIKGVGKKEINLGIV 191 (235)
T ss_pred eeEecCcEEEEEEEEecCCcceEecccccCeeEEEEEEcCCCCeEEEEEEEecCCCCHHHHHHHHhhhcccCcceeeccc
Confidence 78899999999999999999999999999999999999999999999999999999999999999998775444455668
Q ss_pred CCCCCCCCCCceEEEeeccCCCCCccceEEeecceeecc
Q 025618 171 NPGDIKFGSRKYYRYIGSLTVPPCTEGVIWTIGNKVRTV 209 (250)
Q Consensus 171 ~~~~L~~~~~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~i 209 (250)
++.+|+|+..+||+|.||||||||+|+|+|+||++|+-+
T Consensus 192 ~~~~llp~~~~yy~Y~GSLTTPPC~E~V~WiV~~~p~~~ 230 (235)
T PLN02179 192 DPRDIRFETNNFYRYIGSLTIPPCTEGVIWTVVKRVVWF 230 (235)
T ss_pred CHHHhCcCCCCEEEEecccCCCCCCCceEEEEecCcEEe
Confidence 888888888899999999999999999999999999854
No 17
>cd03117 alpha_CA_IV_XV_like Carbonic anhydrase alpha, CA_IV, CA_XV, like isozymes. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This subgroup, restricted to animals, contains isozyme IV and similar proteins such as mouse CA XV. Isozymes IV is attached to membranes via a glycosylphosphatidylinositol (GPI) tail. I
Probab=100.00 E-value=1.9e-63 Score=430.79 Aligned_cols=199 Identities=35% Similarity=0.541 Sum_probs=175.7
Q ss_pred CCCCCcceeeCCceeecCCCCCcee-ecc--CCceEEEecCeeEEEEecCCCCceEEcC----eEEEeeeeeecC-----
Q 025618 41 GKLQSPIDLLNQRVQVLPALGKLKR-DYK--PALAVVKNRGHDICVWWRGDAGKMHING----TIYKLLQCHWHT----- 108 (250)
Q Consensus 41 G~~QSPIdI~~~~~~~~~~l~~l~~-~y~--~~~~~l~N~G~tv~v~~~~~~~~~~~~g----~~Y~l~q~HfH~----- 108 (250)
|++||||||.+..+..+..+++|++ +|. +..++|.|+|||+++.+.+ .+.++| .+|+|.||||||
T Consensus 1 G~~QSPI~I~~~~~~~~~~l~~L~~~~y~~~~~~~~l~N~G~tv~v~~~~---~~~i~gg~L~~~Y~l~qfHfH~G~~~~ 77 (234)
T cd03117 1 GKRQSPINIVTKKVQYDENLTPFTFTGYDDTTTNWTITNNGHTVQVTLPD---GAKISGGGLPGTYKALQFHFHWGSNGS 77 (234)
T ss_pred CCcCCCEEEcccceEECCCCCcceeccccCCCCceEEEECCeEEEEEecC---CceEeCCCCCCcEEEEEEEEEeCCCCC
Confidence 7899999999988877788999998 685 3678999999999999863 456666 799999999999
Q ss_pred -CCCccccccccceeEeeeeecCC-----------CCeEEEEEEEecC-CCChhHHHHHHHhhhccc--cceeecccCCC
Q 025618 109 -PSEHTINGSSYEMELHLVHLSSD-----------GKLAVTGIVYEYG-RPDPFLSKLLHHIKSLGK--EEKEVGIVNPG 173 (250)
Q Consensus 109 -gSEH~idG~~~~~E~H~Vh~~~~-----------~~laVl~v~~~~g-~~n~~l~~i~~~l~~i~~--~~~~~~~~~~~ 173 (250)
||||+|||++|||||||||++.+ +++|||||||++| ..|+.++.|++.+..+.. ....+..+++.
T Consensus 78 ~gSEH~idg~~~~~E~HlVH~n~~~~~~~~A~~~~~~laVv~vl~~~~~~~n~~l~~i~~~l~~i~~~~~~~~~~~~~~~ 157 (234)
T cd03117 78 PGSEHTIDGERYPMELHIVHIKESYNSLLEALKDSDGLAVLGFFIEEGEEENTNFDPLISALSNIPQKGGSTNLTPFSLR 157 (234)
T ss_pred CCCcceeCCeecchheeeeEecCCCCCHHHHhcCCCceEEEEEEEEecCCCCccHHHHHHHHHhcccCCceeecCCCCHH
Confidence 89999999999999999999974 7899999999999 579999999999998865 33445567888
Q ss_pred CCCCCC--CceEEEeeccCCCCCccceEEeecceeecccHHHHHHHHHHhcC------CCCCCCCCCCCCCCCcEEE
Q 025618 174 DIKFGS--RKYYRYIGSLTVPPCTEGVIWTIGNKVRTVSREQVRALKEEVHD------GYEKNARPTNELNGRPIWF 242 (250)
Q Consensus 174 ~L~~~~--~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~iS~~Ql~~f~~~~~~------~~~~N~Rp~Qpln~R~V~~ 242 (250)
+|+|.. ..||+|.||||||||+|+|+|+||++|++||.+||++||+++.. .+.+|+||+||||||.|++
T Consensus 158 ~llp~~~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~Is~~Ql~~fr~l~~~~~~~~~~l~~N~Rp~Q~ln~R~v~~ 234 (234)
T cd03117 158 SLLPSVLLTKYYRYNGSLTTPGCNEAVIWTVFEEPIPISRAQLDAFSTVLFFDTDNGQPMVNNFRPVQPLNGRVVYA 234 (234)
T ss_pred HHCCCcccCCeEEEeccccCCCCcccEEEEEeCCceecCHHHHHHHHHHhcccccCCCcccCCCCCCCCCCCCEEeC
Confidence 888864 58999999999999999999999999999999999999998853 2578999999999999974
No 18
>cd00326 alpha_CA Carbonic anhydrase alpha (vertebrate-like) group. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues and a fourth conserved histidine plays a potential role in proton transfer.
Probab=100.00 E-value=1.5e-62 Score=423.60 Aligned_cols=201 Identities=41% Similarity=0.693 Sum_probs=180.3
Q ss_pred CCCCCcceeeCCceeecCCCCCceeeccC-CceEEEecCeeEEEEecCCCCceEEcC--eEEEeeeeeecC------CCC
Q 025618 41 GKLQSPIDLLNQRVQVLPALGKLKRDYKP-ALAVVKNRGHDICVWWRGDAGKMHING--TIYKLLQCHWHT------PSE 111 (250)
Q Consensus 41 G~~QSPIdI~~~~~~~~~~l~~l~~~y~~-~~~~l~N~G~tv~v~~~~~~~~~~~~g--~~Y~l~q~HfH~------gSE 111 (250)
|++||||||.+..+.....+++|++.|.. ..+++.|+|||+++.+.+..+.+.++| .+|+|.|||||| |||
T Consensus 1 G~~QSPI~I~~~~~~~~~~l~~l~~~~~~~~~~~i~N~G~tv~~~~~~~~~~i~~~~l~~~y~l~q~HfH~G~~~~~gSE 80 (227)
T cd00326 1 GKRQSPINIVTSAVVYDPSLPPLNFDYYPTTSLTLVNNGHTVQVNFDDDGGTLSGGGLPGRYKLVQFHFHWGSENSPGSE 80 (227)
T ss_pred CCCcCCeEECccceeECCCCCceeecccCCCceEEEECCeeEEEEecCCCceEeCCCCCCCEEEEEEEEecCCCCCCCCc
Confidence 78999999999888777779999997754 678999999999999875445778888 899999999999 999
Q ss_pred ccccccccceeEeeeeecC----------CCCeEEEEEEEecC-CCChhHHHHHHHhhhccc--cceeecccCCCCCCCC
Q 025618 112 HTINGSSYEMELHLVHLSS----------DGKLAVTGIVYEYG-RPDPFLSKLLHHIKSLGK--EEKEVGIVNPGDIKFG 178 (250)
Q Consensus 112 H~idG~~~~~E~H~Vh~~~----------~~~laVl~v~~~~g-~~n~~l~~i~~~l~~i~~--~~~~~~~~~~~~L~~~ 178 (250)
|+|||++|||||||||++. ++++|||||||+++ ..|++++.|++.+..+.. ....+..+++.+|+|.
T Consensus 81 H~i~g~~y~~E~H~Vh~~~~~~~~~a~~~~~~laVv~v~~~~~~~~n~~l~~i~~~l~~~~~~~~~~~~~~~~l~~llp~ 160 (227)
T cd00326 81 HTIDGKRYPLELHLVHYNSDYYSSEAAKKPGGLAVLGVFFEVGEKENPFLKKILDALPKIKYKGKETTLPPFDLSDLLPS 160 (227)
T ss_pred ceeCCEeccccceEEEECCCCCChhhhccCCCeEEEEEEEEecccCChhHHHHHHHHHhcCcCCcEeecCCCCHHHHCCC
Confidence 9999999999999999998 78999999999999 789999999999998863 4455667888888887
Q ss_pred C-CceEEEeeccCCCCCccceEEeecceeecccHHHHHHHHHHhcC---CCCCCCCCCCCCCCCcEE
Q 025618 179 S-RKYYRYIGSLTVPPCTEGVIWTIGNKVRTVSREQVRALKEEVHD---GYEKNARPTNELNGRPIW 241 (250)
Q Consensus 179 ~-~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~iS~~Ql~~f~~~~~~---~~~~N~Rp~Qpln~R~V~ 241 (250)
. .+||+|.||||||||+|+|+|+||++|++||.+||+.||+++.. .+.+|+||+||+|||.|+
T Consensus 161 ~~~~y~~Y~GSLTTPpC~E~V~W~V~~~pi~Is~~Ql~~f~~l~~~~~~~~~~N~Rp~Q~ln~R~v~ 227 (227)
T cd00326 161 SLRDYYTYEGSLTTPPCSEGVTWIVFKEPITISKEQLEAFRSLLDREGKPLVNNYRPVQPLNGRVVY 227 (227)
T ss_pred CcCCEEEEeccCcCCCCccceEEEEeCCceecCHHHHHHHHHHHhcCCCcccCCCCCCCCCCCCeeC
Confidence 7 99999999999999999999999999999999999999998642 256899999999999984
No 19
>PF09211 DUF1958: Domain of unknown function (DUF1958); InterPro: IPR015294 Penicillin-binding proteins are beta-lactam antibiotic-sensitive bacterial enzymes required for the growth and maintenance of the peptidoglycan layer of the bacterial cell wall that protects the cell from osmotic stress. Penicillin-binding protein 4 (PBP4) functions as a transpeptidase, and belongs to MEROPS peptidase family S11 (clan SE). PBP4 acts co-operatively with PBP2 in staphylococcal cell wall biosynthesis and susceptibility to antimicrobial agents []. This entry represents the C-terminal domain PBP4.; PDB: 1TVF_A 3HUN_A 3HUM_B.
Probab=37.90 E-value=9.4 Score=26.40 Aligned_cols=17 Identities=41% Similarity=0.679 Sum_probs=12.6
Q ss_pred CCccccccccceeEeee
Q 025618 110 SEHTINGSSYEMELHLV 126 (250)
Q Consensus 110 SEH~idG~~~~~E~H~V 126 (250)
-||+|||+.|..+=-|.
T Consensus 8 G~h~IdGk~y~v~kDlY 24 (65)
T PF09211_consen 8 GEHTIDGKKYYVKKDLY 24 (65)
T ss_dssp EEEEETTEEEEESS-EE
T ss_pred ccEEECCEEEEecCChh
Confidence 38999999998874433
No 20
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=33.81 E-value=1.8e+02 Score=23.00 Aligned_cols=77 Identities=18% Similarity=0.296 Sum_probs=43.4
Q ss_pred EEEecCeeEEEEecCCCCceEEcCeEEEeeeeeecCCCCccccccccceeE-eeeeecC--------CCCeEEEEEEEec
Q 025618 73 VVKNRGHDICVWWRGDAGKMHINGTIYKLLQCHWHTPSEHTINGSSYEMEL-HLVHLSS--------DGKLAVTGIVYEY 143 (250)
Q Consensus 73 ~l~N~G~tv~v~~~~~~~~~~~~g~~Y~l~q~HfH~gSEH~idG~~~~~E~-H~Vh~~~--------~~~laVl~v~~~~ 143 (250)
.+.|+-....+.+.+..|++ ..|+.|.| ||-| +.+||||. |+++... .+|-..|.+|++-
T Consensus 38 ~v~dnlqqWii~v~Ga~GTL-Ya~e~~qL-q~~F---------~~~YP~esPqVmF~~~~P~HPHiYSNGHICL~iL~d~ 106 (161)
T KOG0427|consen 38 RVTDNLQQWIIEVTGAPGTL-YANETYQL-QVEF---------PEHYPMESPQVMFVGPAPLHPHIYSNGHICLDILYDS 106 (161)
T ss_pred ecccchheeEEEEecCCcee-ecCcEEEE-EEec---------CCCCCCCCCeEEEecCCCCCCceecCCeEEEEeeccc
Confidence 46677677777776655554 45677766 4444 33588873 4443332 2566788888765
Q ss_pred CCC----ChhHHHHHHHhhhc
Q 025618 144 GRP----DPFLSKLLHHIKSL 160 (250)
Q Consensus 144 g~~----n~~l~~i~~~l~~i 160 (250)
=.+ +...-.|++.|.+-
T Consensus 107 WsPAmsv~SvClSIlSMLSSs 127 (161)
T KOG0427|consen 107 WSPAMSVQSVCLSILSMLSSS 127 (161)
T ss_pred CCcchhhHHHHHHHHHHHccC
Confidence 322 23333455655543
No 21
>KOG3110 consensus Riboflavin kinase [Coenzyme transport and metabolism]
Probab=32.89 E-value=74 Score=25.37 Aligned_cols=45 Identities=24% Similarity=0.294 Sum_probs=26.9
Q ss_pred cccccccceeEeeeeecCCC------CeEEEEEEEecCCCChhHHHHHHHhh
Q 025618 113 TINGSSYEMELHLVHLSSDG------KLAVTGIVYEYGRPDPFLSKLLHHIK 158 (250)
Q Consensus 113 ~idG~~~~~E~H~Vh~~~~~------~laVl~v~~~~g~~n~~l~~i~~~l~ 158 (250)
..+.+.-.||+|++|.-..+ .++|||..-.. ..=..|+.+++++.
T Consensus 77 ~Y~N~~Kt~E~hlih~f~~DFYge~l~~~IvGyiRpe-~nf~slesLi~~I~ 127 (153)
T KOG3110|consen 77 YYKNKKKTMELHLIHDFGEDFYGETLKVIIVGYIRPE-LNFDSLESLIEAIH 127 (153)
T ss_pred ccCCcccceeeeeehhcccchhhheeeEEEEEeeccc-cCcchHHHHHHHHH
Confidence 34566788999999987653 34555543221 12234677777664
No 22
>PHA02614 Major capsid protein VP1; Provisional
Probab=24.39 E-value=1.3e+02 Score=27.71 Aligned_cols=40 Identities=18% Similarity=0.349 Sum_probs=25.2
Q ss_pred CCCceE-EEeeccCCCCC---ccceEEeecce----------eecccHHHHHHH
Q 025618 178 GSRKYY-RYIGSLTVPPC---TEGVIWTIGNK----------VRTVSREQVRAL 217 (250)
Q Consensus 178 ~~~~yy-~Y~GSLTtPpC---~E~V~WiV~~~----------p~~iS~~Ql~~f 217 (250)
++..|| +|.|-++|||- +-.++=+++.+ -++||...+--|
T Consensus 213 ENtRYFG~~tGG~~TPPVl~ftNt~TTvLLDENGVGpLCkgd~Lyls~aDi~G~ 266 (363)
T PHA02614 213 ENTRYFGTYTGGANTPPVLQFTNTSTTVLLDENGVGPLCKGDGLYLSCADICGF 266 (363)
T ss_pred cCceeeEeecCCCCCCCeEEecCcceEEEEcCCCcccCccCCcEEEEhhhcccc
Confidence 344555 89999999984 33444444443 577777766543
No 23
>PHA02771 hypothetical protein; Provisional
Probab=22.55 E-value=76 Score=23.35 Aligned_cols=19 Identities=26% Similarity=0.141 Sum_probs=16.0
Q ss_pred eecceeecccHHHHHHHHH
Q 025618 201 TIGNKVRTVSREQVRALKE 219 (250)
Q Consensus 201 iV~~~p~~iS~~Ql~~f~~ 219 (250)
++|++|+.||.+|.+.+-.
T Consensus 24 L~F~~~l~ite~ey~ELi~ 42 (90)
T PHA02771 24 LMFNKEIIVSYNQFEEIIK 42 (90)
T ss_pred hhcCCCeEecHHHHHHHHc
Confidence 4789999999999988753
No 24
>smart00190 IL4_13 Interleukins 4 and 13. Interleukins-4 and -13 are cytokines involved in inflammatory and immune responses. IL-4 stimulates B and T cells.
Probab=21.35 E-value=28 Score=27.71 Aligned_cols=41 Identities=12% Similarity=0.278 Sum_probs=33.2
Q ss_pred ChhHHHHHHHhhhccccceeecccCCCCCCCCCCceEEEeeccCCCCCccceEEeecceeecccHHH
Q 025618 147 DPFLSKLLHHIKSLGKEEKEVGIVNPGDIKFGSRKYYRYIGSLTVPPCTEGVIWTIGNKVRTVSREQ 213 (250)
Q Consensus 147 n~~l~~i~~~l~~i~~~~~~~~~~~~~~L~~~~~~yy~Y~GSLTtPpC~E~V~WiV~~~p~~iS~~Q 213 (250)
|-.|+.|++.|..++.. -+|||.|...|=||..|-..+...
T Consensus 28 ~~~LkEIIk~Ln~lT~~--------------------------~~~~C~e~~V~dV~~~~kNtTe~e 68 (138)
T smart00190 28 DITLREIIETLNNVTQK--------------------------GTNLCTEMMVPDVLAATKNTTEKE 68 (138)
T ss_pred cchHHHHHHHHHHHccC--------------------------CCCCcccccHHHHhcccCCCcchh
Confidence 44788888888766531 368999999999999999999877
No 25
>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family of glycosyl hydrolases (GH65 from CAZY) contains this domain and includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [].; PDB: 1H54_A.
Probab=21.13 E-value=1.5e+02 Score=18.91 Aligned_cols=38 Identities=13% Similarity=0.096 Sum_probs=14.6
Q ss_pred eeccCCceEEEecCeeEEEEecCCC-C-ceEEcCeEEEee
Q 025618 65 RDYKPALAVVKNRGHDICVWWRGDA-G-KMHINGTIYKLL 102 (250)
Q Consensus 65 ~~y~~~~~~l~N~G~tv~v~~~~~~-~-~~~~~g~~Y~l~ 102 (250)
+.|....+.|.=+.+.+.+....+. . .+.+.|..|.|.
T Consensus 14 ~~~rg~~l~v~i~~~~v~v~~~~g~~~l~i~v~g~~~~L~ 53 (54)
T PF03633_consen 14 LRYRGHWLEVEITHEKVTVTLLSGDAPLTIKVYGEEVTLK 53 (54)
T ss_dssp EEETTEEEEEEEETTEEEEEEEESS--EEEEETT------
T ss_pred EEECCEEEEEEEECCEEEEEEccCCccEEEEECCCccccC
Confidence 3454444444444454555443221 1 455667776664
Done!