Query 025621
Match_columns 250
No_of_seqs 137 out of 1392
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 14:05:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025621.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025621hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j21_g 50S ribosomal protein L 88.7 0.19 6.4E-06 29.5 1.5 26 93-118 12-37 (51)
2 2ayj_A 50S ribosomal protein L 82.1 1.6 5.5E-05 25.9 3.3 25 94-118 18-42 (56)
3 1z2q_A LM5-1; membrane protein 75.4 1 3.5E-05 29.3 1.3 24 94-117 20-45 (84)
4 1x4u_A Zinc finger, FYVE domai 75.4 0.94 3.2E-05 29.5 1.0 23 95-117 14-38 (84)
5 2yw8_A RUN and FYVE domain-con 72.8 1.2 4.1E-05 28.8 1.1 24 94-117 18-43 (82)
6 3t7l_A Zinc finger FYVE domain 71.1 2.1 7.3E-05 28.2 2.0 24 95-118 20-45 (90)
7 1vfy_A Phosphatidylinositol-3- 70.3 1.1 3.8E-05 28.3 0.4 22 96-117 12-35 (73)
8 1wfk_A Zinc finger, FYVE domai 69.8 1.2 4.2E-05 29.3 0.6 24 94-117 8-33 (88)
9 1joc_A EEA1, early endosomal a 69.7 1.4 4.8E-05 31.1 0.9 23 95-117 69-93 (125)
10 1dvp_A HRS, hepatocyte growth 68.0 1.3 4.5E-05 34.5 0.5 24 95-118 161-186 (220)
11 2knc_B Integrin beta-3; transm 65.2 17 0.0006 23.1 5.4 39 146-184 10-48 (79)
12 3zyq_A Hepatocyte growth facto 62.9 1.7 5.7E-05 34.1 0.2 24 95-118 164-189 (226)
13 1y02_A CARP2, FYVE-ring finger 62.8 1.4 4.6E-05 30.9 -0.3 22 96-117 20-43 (120)
14 2dkt_A Ring finger and CHY zin 56.7 2.4 8.1E-05 30.6 0.1 27 94-120 82-109 (143)
15 2cr8_A MDM4 protein; ZF-ranbp 56.2 4.2 0.00014 23.5 1.1 20 96-115 12-31 (53)
16 2c6a_A Ubiquitin-protein ligas 54.1 5.4 0.00018 22.5 1.3 22 94-115 12-33 (46)
17 3mpx_A FYVE, rhogef and PH dom 45.6 4.4 0.00015 34.7 0.0 24 95-118 375-400 (434)
18 2pg3_A Queuosine biosynthesis 44.4 9.1 0.00031 29.6 1.7 18 105-122 191-208 (232)
19 1wil_A KIAA1045 protein; ring 42.7 11 0.00037 24.4 1.5 27 94-120 14-40 (89)
20 3gj3_B Nuclear pore complex pr 40.5 11 0.00037 19.7 1.1 18 98-115 10-27 (33)
21 3jyw_9 60S ribosomal protein L 38.6 9.4 0.00032 23.9 0.7 27 94-120 25-55 (72)
22 3u5e_m 60S ribosomal protein L 37.5 13 0.00044 25.9 1.4 25 94-118 92-118 (128)
23 3bl5_A Queuosine biosynthesis 37.3 14 0.00048 28.0 1.8 24 97-122 182-205 (219)
24 2apo_B Ribosome biogenesis pro 34.8 12 0.00041 22.5 0.7 22 94-117 5-26 (60)
25 2vrw_B P95VAV, VAV1, proto-onc 33.7 8.6 0.00029 32.6 -0.0 27 94-120 356-385 (406)
26 1twf_L ABC10-alpha, DNA-direct 32.8 16 0.00054 22.8 1.1 27 94-120 27-56 (70)
27 3lpe_B DNA-directed RNA polyme 32.4 13 0.00043 22.4 0.6 21 96-118 2-22 (59)
28 3j20_Y 30S ribosomal protein S 28.8 6.4 0.00022 22.8 -1.2 23 94-116 18-44 (50)
29 2knc_A Integrin alpha-IIB; tra 28.2 69 0.0024 18.7 3.3 14 53-66 27-40 (54)
30 2aus_D NOP10, ribosome biogene 26.7 22 0.00074 21.4 0.9 22 94-117 4-25 (60)
31 1ffk_W Ribosomal protein L37AE 26.6 15 0.0005 23.1 0.1 28 93-120 25-56 (73)
32 2con_A RUH-035 protein, NIN on 26.5 22 0.00075 22.7 1.0 24 94-117 14-38 (79)
33 3gox_A Restriction endonucleas 24.9 18 0.0006 27.3 0.3 17 91-107 71-87 (200)
34 2k1p_A Zinc finger RAN-binding 23.9 36 0.0012 17.5 1.4 12 95-106 20-31 (33)
35 3p8b_A DNA-directed RNA polyme 23.1 29 0.001 22.2 1.0 22 94-117 22-43 (81)
36 2elu_A Zinc finger protein 406 22.8 12 0.00043 19.2 -0.6 8 110-117 10-17 (37)
37 3izc_m 60S ribosomal protein R 22.4 11 0.00036 24.9 -1.2 28 94-121 35-66 (92)
38 2k4x_A 30S ribosomal protein S 22.1 23 0.00078 20.8 0.4 23 94-116 17-43 (55)
39 2jne_A Hypothetical protein YF 21.4 13 0.00045 24.7 -0.9 23 96-118 33-57 (101)
40 4gat_A Nitrogen regulatory pro 20.2 55 0.0019 20.0 1.9 28 94-122 8-40 (66)
No 1
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=88.69 E-value=0.19 Score=29.52 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=23.1
Q ss_pred CCcccccccccccCCCCCCCcchhhh
Q 025621 93 GDLRYCQKCSHYKPPRAHHCRVCKRC 118 (250)
Q Consensus 93 ~~~~~C~~C~~~kp~Rs~HC~~C~~C 118 (250)
.....|..|....|.++..|..||.-
T Consensus 12 ~~k~iCpkC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 12 FKKYVCLRCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp SSEEECTTTCCEECTTCSSCSSSSSC
T ss_pred hCCccCCCCCCcCCCCceecCCCCCc
Confidence 36689999999999999999999864
No 2
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=82.08 E-value=1.6 Score=25.89 Aligned_cols=25 Identities=36% Similarity=0.821 Sum_probs=22.4
Q ss_pred CcccccccccccCCCCCCCcchhhh
Q 025621 94 DLRYCQKCSHYKPPRAHHCRVCKRC 118 (250)
Q Consensus 94 ~~~~C~~C~~~kp~Rs~HC~~C~~C 118 (250)
....|..|...-|+|+..|+.||.-
T Consensus 18 ~k~ICrkC~ARnp~~A~~CRKCg~~ 42 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRATKCRRCHST 42 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCCC
T ss_pred chhhhccccCcCCcccccccCCCCC
Confidence 5689999999999999999998753
No 3
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=75.37 E-value=1 Score=29.31 Aligned_cols=24 Identities=38% Similarity=0.807 Sum_probs=17.7
Q ss_pred Ccccccccccc--cCCCCCCCcchhh
Q 025621 94 DLRYCQKCSHY--KPPRAHHCRVCKR 117 (250)
Q Consensus 94 ~~~~C~~C~~~--kp~Rs~HC~~C~~ 117 (250)
....|..|... .-.|-|||+.||+
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~ 45 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGY 45 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCC
T ss_pred CCCCCcCcCCccccchhcccccCCCc
Confidence 34678888864 3467899999886
No 4
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.36 E-value=0.94 Score=29.51 Aligned_cols=23 Identities=22% Similarity=0.561 Sum_probs=16.2
Q ss_pred cccccccccc--cCCCCCCCcchhh
Q 025621 95 LRYCQKCSHY--KPPRAHHCRVCKR 117 (250)
Q Consensus 95 ~~~C~~C~~~--kp~Rs~HC~~C~~ 117 (250)
...|..|... .-.|-|||+.||+
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~ 38 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGN 38 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCC
T ss_pred CCcCcCcCCccccchhhhhhcCCCc
Confidence 3567777754 4467789988875
No 5
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=72.81 E-value=1.2 Score=28.83 Aligned_cols=24 Identities=33% Similarity=0.859 Sum_probs=17.2
Q ss_pred Ccccccccccc--cCCCCCCCcchhh
Q 025621 94 DLRYCQKCSHY--KPPRAHHCRVCKR 117 (250)
Q Consensus 94 ~~~~C~~C~~~--kp~Rs~HC~~C~~ 117 (250)
....|..|... --.|-|||+.||+
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~ 43 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGH 43 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCC
T ss_pred cCCcccCcCCcccCccccccCCCCCC
Confidence 34678888754 3467899999886
No 6
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=71.14 E-value=2.1 Score=28.19 Aligned_cols=24 Identities=33% Similarity=0.793 Sum_probs=16.9
Q ss_pred cccccccccc--cCCCCCCCcchhhh
Q 025621 95 LRYCQKCSHY--KPPRAHHCRVCKRC 118 (250)
Q Consensus 95 ~~~C~~C~~~--kp~Rs~HC~~C~~C 118 (250)
...|..|... --.|-|||+.||+-
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v 45 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKV 45 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCE
T ss_pred CCcCcCCCCcccchhhCccccCCCCE
Confidence 3668888753 34578999999763
No 7
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=70.25 E-value=1.1 Score=28.28 Aligned_cols=22 Identities=41% Similarity=0.813 Sum_probs=16.4
Q ss_pred ccccccccc--cCCCCCCCcchhh
Q 025621 96 RYCQKCSHY--KPPRAHHCRVCKR 117 (250)
Q Consensus 96 ~~C~~C~~~--kp~Rs~HC~~C~~ 117 (250)
..|..|... .-.|-|||+.||+
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~ 35 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGG 35 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCC
T ss_pred CcccCCCCccCCccccccCCCCCE
Confidence 468888754 3467899999986
No 8
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=69.84 E-value=1.2 Score=29.27 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=17.6
Q ss_pred Ccccccccccc--cCCCCCCCcchhh
Q 025621 94 DLRYCQKCSHY--KPPRAHHCRVCKR 117 (250)
Q Consensus 94 ~~~~C~~C~~~--kp~Rs~HC~~C~~ 117 (250)
....|..|... .-.|-|||+.||+
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~ 33 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGR 33 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCC
T ss_pred cCCCCcCcCCcccCccccccCCCCCC
Confidence 44678888864 3467799999886
No 9
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=69.72 E-value=1.4 Score=31.08 Aligned_cols=23 Identities=35% Similarity=0.849 Sum_probs=17.1
Q ss_pred cccccccccc--cCCCCCCCcchhh
Q 025621 95 LRYCQKCSHY--KPPRAHHCRVCKR 117 (250)
Q Consensus 95 ~~~C~~C~~~--kp~Rs~HC~~C~~ 117 (250)
...|..|... .-.|-|||+.||+
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~ 93 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGN 93 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCC
T ss_pred CCCCcCcCCccccccccccCCCCCe
Confidence 3678888764 3468899999986
No 10
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=68.01 E-value=1.3 Score=34.46 Aligned_cols=24 Identities=38% Similarity=0.823 Sum_probs=18.2
Q ss_pred cccccccccc--cCCCCCCCcchhhh
Q 025621 95 LRYCQKCSHY--KPPRAHHCRVCKRC 118 (250)
Q Consensus 95 ~~~C~~C~~~--kp~Rs~HC~~C~~C 118 (250)
...|..|... --.|-|||+.||+-
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v 186 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQV 186 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCE
T ss_pred CCccCCCCCccCCcccccccCCcCCE
Confidence 3689999854 34688999999863
No 11
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=65.21 E-value=17 Score=23.14 Aligned_cols=39 Identities=21% Similarity=0.408 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHh
Q 025621 146 TAYVISGLLLVPLSVALSVLLGWHIYLIFHNKTTIEYHE 184 (250)
Q Consensus 146 ~~~~~~~~l~~~~~~~~~~ll~~~~~li~~n~TT~E~~~ 184 (250)
+..++.+++..++++.+..++++.+.......-.++..+
T Consensus 10 ~~~Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kFE 48 (79)
T 2knc_B 10 ILVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFE 48 (79)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555656666666665444444444433
No 12
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=62.88 E-value=1.7 Score=34.11 Aligned_cols=24 Identities=33% Similarity=0.818 Sum_probs=17.8
Q ss_pred cccccccccc--cCCCCCCCcchhhh
Q 025621 95 LRYCQKCSHY--KPPRAHHCRVCKRC 118 (250)
Q Consensus 95 ~~~C~~C~~~--kp~Rs~HC~~C~~C 118 (250)
...|..|... .-.|-|||+.||+.
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v 189 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQI 189 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCE
T ss_pred CCCCcCcCCCCCccccccccCCCcCE
Confidence 3579999843 34578999999874
No 13
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=62.83 E-value=1.4 Score=30.93 Aligned_cols=22 Identities=27% Similarity=0.748 Sum_probs=16.5
Q ss_pred ccccccccc--cCCCCCCCcchhh
Q 025621 96 RYCQKCSHY--KPPRAHHCRVCKR 117 (250)
Q Consensus 96 ~~C~~C~~~--kp~Rs~HC~~C~~ 117 (250)
..|..|... -..|-|||+.||+
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ 43 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKK 43 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCC
T ss_pred CcccCcCCccccccccccCCCCCC
Confidence 578888753 3467899999976
No 14
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=56.70 E-value=2.4 Score=30.58 Aligned_cols=27 Identities=26% Similarity=0.786 Sum_probs=17.7
Q ss_pred CcccccccccccCCCC-CCCcchhhhhh
Q 025621 94 DLRYCQKCSHYKPPRA-HHCRVCKRCVL 120 (250)
Q Consensus 94 ~~~~C~~C~~~kp~Rs-~HC~~C~~CV~ 120 (250)
...||.+|+.+.+++. .||..||-|..
T Consensus 82 ~~Y~C~~C~l~d~~k~~yHC~~CgiCR~ 109 (143)
T 2dkt_A 82 GEYYCSICHLFDKDKRQYHCESCGICRI 109 (143)
T ss_dssp CSEECSSSCCEECSSSEEEETTTTEEEE
T ss_pred eeeEeceeecccCCCceecCCCCCceec
Confidence 4578888888754433 37777776654
No 15
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=56.25 E-value=4.2 Score=23.48 Aligned_cols=20 Identities=25% Similarity=0.851 Sum_probs=11.2
Q ss_pred ccccccccccCCCCCCCcch
Q 025621 96 RYCQKCSHYKPPRAHHCRVC 115 (250)
Q Consensus 96 ~~C~~C~~~kp~Rs~HC~~C 115 (250)
=.|..|+..-|+--.||..|
T Consensus 12 WkC~~C~k~N~Pl~ryC~rC 31 (53)
T 2cr8_A 12 WQCTECKKFNSPSKRYCFRC 31 (53)
T ss_dssp EECSSSCCEECSSCCBCTTT
T ss_pred eecccccccCCCccchhHHH
Confidence 44666665555555555544
No 16
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=54.13 E-value=5.4 Score=22.54 Aligned_cols=22 Identities=36% Similarity=1.005 Sum_probs=15.5
Q ss_pred CcccccccccccCCCCCCCcch
Q 025621 94 DLRYCQKCSHYKPPRAHHCRVC 115 (250)
Q Consensus 94 ~~~~C~~C~~~kp~Rs~HC~~C 115 (250)
..=.|..|+..-|+--.||..|
T Consensus 12 D~WkC~~C~~~N~Pl~r~C~rC 33 (46)
T 2c6a_A 12 DYWKCTSCNEMNPPLPSHCNRC 33 (46)
T ss_dssp GCEECTTTCCEECSSCSSCTTT
T ss_pred ceEecccccccCCCccchhhHH
Confidence 3356888887777777777665
No 17
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=45.63 E-value=4.4 Score=34.74 Aligned_cols=24 Identities=29% Similarity=0.764 Sum_probs=0.0
Q ss_pred cccccccccc--cCCCCCCCcchhhh
Q 025621 95 LRYCQKCSHY--KPPRAHHCRVCKRC 118 (250)
Q Consensus 95 ~~~C~~C~~~--kp~Rs~HC~~C~~C 118 (250)
...|..|... .-.|-|||+.||+.
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~ 400 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKI 400 (434)
T ss_dssp --------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCE
Confidence 4678888753 33577999999873
No 18
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=44.37 E-value=9.1 Score=29.59 Aligned_cols=18 Identities=28% Similarity=0.663 Sum_probs=14.9
Q ss_pred cCCCCCCCcchhhhhhhH
Q 025621 105 KPPRAHHCRVCKRCVLRM 122 (250)
Q Consensus 105 kp~Rs~HC~~C~~CV~~~ 122 (250)
.+.+.+||..|+.|..|.
T Consensus 191 ~~~~~~~CG~C~~C~~r~ 208 (232)
T 2pg3_A 191 NGIKGDGCGQCAACHLRA 208 (232)
T ss_dssp TSCCTTTTSCSHHHHHHH
T ss_pred CCCCCCcCCcCHhHHHHH
Confidence 344568999999999987
No 19
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=42.73 E-value=11 Score=24.42 Aligned_cols=27 Identities=26% Similarity=0.671 Sum_probs=22.4
Q ss_pred CcccccccccccCCCCCCCcchhhhhh
Q 025621 94 DLRYCQKCSHYKPPRAHHCRVCKRCVL 120 (250)
Q Consensus 94 ~~~~C~~C~~~kp~Rs~HC~~C~~CV~ 120 (250)
....|..|+.+-..--.-|++|+|+-.
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~RvfH 40 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRVFH 40 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSCCC
T ss_pred CCcccCccccccccceecccccccccc
Confidence 447899999998888889999999643
No 20
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=40.51 E-value=11 Score=19.69 Aligned_cols=18 Identities=33% Similarity=0.897 Sum_probs=8.7
Q ss_pred ccccccccCCCCCCCcch
Q 025621 98 CQKCSHYKPPRAHHCRVC 115 (250)
Q Consensus 98 C~~C~~~kp~Rs~HC~~C 115 (250)
|..|-..-...+.+|..|
T Consensus 10 C~~C~~~N~~~~~kC~aC 27 (33)
T 3gj3_B 10 CDTCLVQNKPEAVKCVAC 27 (33)
T ss_dssp CTTTCCEECTTCSBCTTT
T ss_pred CCcccCCCccccCEEccc
Confidence 444544444444445444
No 21
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=38.65 E-value=9.4 Score=23.93 Aligned_cols=27 Identities=26% Similarity=0.543 Sum_probs=20.3
Q ss_pred CcccccccccccCCCC----CCCcchhhhhh
Q 025621 94 DLRYCQKCSHYKPPRA----HHCRVCKRCVL 120 (250)
Q Consensus 94 ~~~~C~~C~~~kp~Rs----~HC~~C~~CV~ 120 (250)
....|+.|...+-.|. .||+.|++=++
T Consensus 25 ~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~A 55 (72)
T 3jyw_9 25 ARYDCSFCGKKTVKRGAAGIWTCSCCKKTVA 55 (72)
T ss_dssp SCBCCSSCCSSCBSBCSSSCBCCSSSCCCCC
T ss_pred cCccCCCCCCceeEecCCCeEECCCCCCEEe
Confidence 5688999987776664 49999987554
No 22
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=37.52 E-value=13 Score=25.93 Aligned_cols=25 Identities=44% Similarity=0.941 Sum_probs=22.0
Q ss_pred CcccccccccccCCCCCCCc--chhhh
Q 025621 94 DLRYCQKCSHYKPPRAHHCR--VCKRC 118 (250)
Q Consensus 94 ~~~~C~~C~~~kp~Rs~HC~--~C~~C 118 (250)
....|..|...-|+|++.|+ .||..
T Consensus 92 ~~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 92 DKSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp SCEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred ceEeeccccccCCchhhccchhhCCCc
Confidence 56999999999999999999 48753
No 23
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=37.33 E-value=14 Score=27.99 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=17.5
Q ss_pred cccccccccCCCCCCCcchhhhhhhH
Q 025621 97 YCQKCSHYKPPRAHHCRVCKRCVLRM 122 (250)
Q Consensus 97 ~C~~C~~~kp~Rs~HC~~C~~CV~~~ 122 (250)
.-..|. .+.+..||..|..|+.|.
T Consensus 182 ~t~sc~--~~~~~~~CG~C~~C~~r~ 205 (219)
T 3bl5_A 182 NTLTCY--NGIIADGCGECPACHLRS 205 (219)
T ss_dssp HCCCST--TSCCSSCCSCSHHHHHHH
T ss_pred heeecc--CCCCCCCCCCCHHHHHHH
Confidence 444563 344469999999999886
No 24
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=34.78 E-value=12 Score=22.53 Aligned_cols=22 Identities=27% Similarity=0.768 Sum_probs=16.6
Q ss_pred CcccccccccccCCCCCCCcchhh
Q 025621 94 DLRYCQKCSHYKPPRAHHCRVCKR 117 (250)
Q Consensus 94 ~~~~C~~C~~~kp~Rs~HC~~C~~ 117 (250)
..+.|..|...-- .+.|+.||.
T Consensus 5 ~mr~C~~CgvYTL--k~~CP~CG~ 26 (60)
T 2apo_B 5 RMKKCPKCGLYTL--KEICPKCGE 26 (60)
T ss_dssp CCEECTTTCCEES--SSBCSSSCS
T ss_pred hceeCCCCCCEec--cccCcCCCC
Confidence 4578888887766 677888874
No 25
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=33.74 E-value=8.6 Score=32.61 Aligned_cols=27 Identities=15% Similarity=0.373 Sum_probs=20.3
Q ss_pred Cccccccccccc---CCCCCCCcchhhhhh
Q 025621 94 DLRYCQKCSHYK---PPRAHHCRVCKRCVL 120 (250)
Q Consensus 94 ~~~~C~~C~~~k---p~Rs~HC~~C~~CV~ 120 (250)
...+|..|...- -.|-|||+.||..|-
T Consensus 356 ~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h 385 (406)
T 2vrw_B 356 ETTSCKACQMLLRGTFYQGYRCYRCRAPAH 385 (406)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCEEC
T ss_pred CCCCCccccchhceeCCCCCCCCCCcCccc
Confidence 568999998653 458899998876443
No 26
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=32.79 E-value=16 Score=22.78 Aligned_cols=27 Identities=26% Similarity=0.525 Sum_probs=19.2
Q ss_pred Ccccccccccc---cCCCCCCCcchhhhhh
Q 025621 94 DLRYCQKCSHY---KPPRAHHCRVCKRCVL 120 (250)
Q Consensus 94 ~~~~C~~C~~~---kp~Rs~HC~~C~~CV~ 120 (250)
-...|..|... ++..+-||+.||.-|+
T Consensus 27 v~Y~C~~CG~~~e~~~~d~irCp~CG~RIL 56 (70)
T 1twf_L 27 LKYICAECSSKLSLSRTDAVRCKDCGHRIL 56 (70)
T ss_dssp CCEECSSSCCEECCCTTSTTCCSSSCCCCC
T ss_pred EEEECCCCCCcceeCCCCCccCCCCCceEe
Confidence 44789999865 4455678999987543
No 27
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=32.37 E-value=13 Score=22.36 Aligned_cols=21 Identities=29% Similarity=0.702 Sum_probs=16.3
Q ss_pred ccccccccccCCCCCCCcchhhh
Q 025621 96 RYCQKCSHYKPPRAHHCRVCKRC 118 (250)
Q Consensus 96 ~~C~~C~~~kp~Rs~HC~~C~~C 118 (250)
+=|..|+.+++.. -|+.|+.|
T Consensus 2 rAC~~C~~v~~~~--~CpnC~~~ 22 (59)
T 3lpe_B 2 RACLKCKYLTNDE--ICPICHSP 22 (59)
T ss_dssp EEETTTCBEESSS--BCTTTCCB
T ss_pred cccccCCcccCCC--CCCCCCCC
Confidence 4588999998776 48888765
No 28
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.80 E-value=6.4 Score=22.76 Aligned_cols=23 Identities=17% Similarity=0.557 Sum_probs=14.7
Q ss_pred Cccccccccccc----CCCCCCCcchh
Q 025621 94 DLRYCQKCSHYK----PPRAHHCRVCK 116 (250)
Q Consensus 94 ~~~~C~~C~~~k----p~Rs~HC~~C~ 116 (250)
..++|+.|..-. -...++|..|+
T Consensus 18 ~~k~CP~CG~~~fm~~~~~R~~C~kCG 44 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHGDRWACGKCG 44 (50)
T ss_dssp SSEECSSSCSSCEEEECSSEEECSSSC
T ss_pred ecccCCCCCCceEEecCCCeEECCCCC
Confidence 569999997621 12345777775
No 29
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=28.17 E-value=69 Score=18.70 Aligned_cols=14 Identities=7% Similarity=-0.100 Sum_probs=7.0
Q ss_pred HHHHHHHhHHHhcC
Q 025621 53 LMCVFSYTVAILRD 66 (250)
Q Consensus 53 ~~~~~~~~~~~~~d 66 (250)
.+.++..+++-+-.
T Consensus 27 ~li~~~LwK~GFFk 40 (54)
T 2knc_A 27 TILVLAMWKVGFFK 40 (54)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCccc
Confidence 33445556665444
No 30
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=26.68 E-value=22 Score=21.41 Aligned_cols=22 Identities=36% Similarity=0.942 Sum_probs=15.8
Q ss_pred CcccccccccccCCCCCCCcchhh
Q 025621 94 DLRYCQKCSHYKPPRAHHCRVCKR 117 (250)
Q Consensus 94 ~~~~C~~C~~~kp~Rs~HC~~C~~ 117 (250)
..+.|..|....- ...|+.||.
T Consensus 4 ~mr~C~~Cg~YTL--k~~CP~CG~ 25 (60)
T 2aus_D 4 RIRKCPKCGRYTL--KETCPVCGE 25 (60)
T ss_dssp CCEECTTTCCEES--SSBCTTTCS
T ss_pred cceECCCCCCEEc--cccCcCCCC
Confidence 4578888887766 566777764
No 31
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=26.65 E-value=15 Score=23.14 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=21.0
Q ss_pred CCcccccccccccCCCC----CCCcchhhhhh
Q 025621 93 GDLRYCQKCSHYKPPRA----HHCRVCKRCVL 120 (250)
Q Consensus 93 ~~~~~C~~C~~~kp~Rs----~HC~~C~~CV~ 120 (250)
.....|+.|...+-.|. .||+.|++-+.
T Consensus 25 ~~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~A 56 (73)
T 1ffk_W 25 KKKYKCPVCGFPKLKRASTSIWVCGHCGYKIA 56 (73)
T ss_pred ccCccCCCCCCceeEEEEeEEEECCCCCcEEE
Confidence 46689999997666655 68999987654
No 32
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=26.51 E-value=22 Score=22.69 Aligned_cols=24 Identities=17% Similarity=0.452 Sum_probs=17.8
Q ss_pred CcccccccccccCCCCC-CCcchhh
Q 025621 94 DLRYCQKCSHYKPPRAH-HCRVCKR 117 (250)
Q Consensus 94 ~~~~C~~C~~~kp~Rs~-HC~~C~~ 117 (250)
....|..|....++.++ -|+.||.
T Consensus 14 ~iLrC~aCf~~t~~~~k~FCp~CGn 38 (79)
T 2con_A 14 YILRCHGCFKTTSDMNRVFCGHCGN 38 (79)
T ss_dssp EEEECSSSCCEESCSSCCSCSSSCC
T ss_pred eeeEecccceECCCcccccccccCc
Confidence 45678888888777665 7888875
No 33
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=24.86 E-value=18 Score=27.35 Aligned_cols=17 Identities=35% Similarity=0.628 Sum_probs=13.4
Q ss_pred cCCCcccccccccccCC
Q 025621 91 KGGDLRYCQKCSHYKPP 107 (250)
Q Consensus 91 ~~~~~~~C~~C~~~kp~ 107 (250)
+....+.|.+|...||.
T Consensus 71 ~~~G~K~C~~Cg~~Kp~ 87 (200)
T 3gox_A 71 KGYDKKICNICHILKNT 87 (200)
T ss_dssp TTSSEEECTTTCBEEEG
T ss_pred ccCCCeECCCCCCCcch
Confidence 34468999999998863
No 34
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=23.91 E-value=36 Score=17.51 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=6.5
Q ss_pred cccccccccccC
Q 025621 95 LRYCQKCSHYKP 106 (250)
Q Consensus 95 ~~~C~~C~~~kp 106 (250)
...|..|...||
T Consensus 20 R~~C~~C~~pk~ 31 (33)
T 2k1p_A 20 RSECNMCNTPKY 31 (33)
T ss_dssp CSBCSSSCCBTT
T ss_pred cccccccCCcCC
Confidence 355555555554
No 35
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=23.07 E-value=29 Score=22.19 Aligned_cols=22 Identities=23% Similarity=0.677 Sum_probs=16.7
Q ss_pred CcccccccccccCCCCCCCcchhh
Q 025621 94 DLRYCQKCSHYKPPRAHHCRVCKR 117 (250)
Q Consensus 94 ~~~~C~~C~~~kp~Rs~HC~~C~~ 117 (250)
..+-|..|..+++.. -|+.|+.
T Consensus 22 ~~rAC~~C~~v~~~d--~CPnCgs 43 (81)
T 3p8b_A 22 SEKACRHCHYITSED--RCPVCGS 43 (81)
T ss_dssp CCEEETTTCBEESSS--SCTTTCC
T ss_pred hHHHHhhCCCccCCC--CCCCCCC
Confidence 457899999998876 3777753
No 36
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=22.84 E-value=12 Score=19.20 Aligned_cols=8 Identities=63% Similarity=1.701 Sum_probs=4.4
Q ss_pred CCCcchhh
Q 025621 110 HHCRVCKR 117 (250)
Q Consensus 110 ~HC~~C~~ 117 (250)
.||+.|.+
T Consensus 10 qhcrfckk 17 (37)
T 2elu_A 10 QHCRFCKK 17 (37)
T ss_dssp CEETTTTE
T ss_pred HHHHHHHH
Confidence 36666654
No 37
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=22.35 E-value=11 Score=24.91 Aligned_cols=28 Identities=25% Similarity=0.511 Sum_probs=20.7
Q ss_pred CcccccccccccCCCC----CCCcchhhhhhh
Q 025621 94 DLRYCQKCSHYKPPRA----HHCRVCKRCVLR 121 (250)
Q Consensus 94 ~~~~C~~C~~~kp~Rs----~HC~~C~~CV~~ 121 (250)
....|+.|...+-.|. .||+.|++=++.
T Consensus 35 ~ky~CpfCgk~~vkR~a~GIW~C~~C~~~~AG 66 (92)
T 3izc_m 35 ARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAG 66 (92)
T ss_dssp SCCCCSSSCSSCCEEEETTEEECTTTCCEEEC
T ss_pred cCCcCCCCCCceeeecccceEEcCCCCCEEeC
Confidence 5688999997776664 489888875543
No 38
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=22.14 E-value=23 Score=20.82 Aligned_cols=23 Identities=22% Similarity=0.574 Sum_probs=13.7
Q ss_pred CcccccccccccC----CCCCCCcchh
Q 025621 94 DLRYCQKCSHYKP----PRAHHCRVCK 116 (250)
Q Consensus 94 ~~~~C~~C~~~kp----~Rs~HC~~C~ 116 (250)
..++|+.|....- ...++|..|+
T Consensus 17 ~~~fCPkCG~~~~ma~~~dr~~C~kCg 43 (55)
T 2k4x_A 17 KHRFCPRCGPGVFLAEHADRYSCGRCG 43 (55)
T ss_dssp SSCCCTTTTTTCCCEECSSEEECTTTC
T ss_pred ccccCcCCCCceeEeccCCEEECCCCC
Confidence 4689999986332 2233565554
No 39
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=21.39 E-value=13 Score=24.71 Aligned_cols=23 Identities=26% Similarity=0.645 Sum_probs=13.5
Q ss_pred cccccccccc--CCCCCCCcchhhh
Q 025621 96 RYCQKCSHYK--PPRAHHCRVCKRC 118 (250)
Q Consensus 96 ~~C~~C~~~k--p~Rs~HC~~C~~C 118 (250)
..|+.|+..- -.+.+||..|++-
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~ 57 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEF 57 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCE
T ss_pred ccCccCCCcceecCCEEECccccch
Confidence 6777777431 2335567777653
No 40
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=20.17 E-value=55 Score=19.98 Aligned_cols=28 Identities=21% Similarity=0.530 Sum_probs=18.3
Q ss_pred CcccccccccccCCC-----CCCCcchhhhhhhH
Q 025621 94 DLRYCQKCSHYKPPR-----AHHCRVCKRCVLRM 122 (250)
Q Consensus 94 ~~~~C~~C~~~kp~R-----s~HC~~C~~CV~~~ 122 (250)
....|..|.....+. ..+ ..||.|-+.+
T Consensus 8 ~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~ 40 (66)
T 4gat_A 8 GPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFL 40 (66)
T ss_dssp SSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHH
T ss_pred CCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHH
Confidence 557888888554332 445 7888887653
Done!