BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025622
         (250 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A5FIU2|MIAB_FLAJ1 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
           OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM
           2064 / UW101) GN=miaB PE=3 SV=1
          Length = 481

 Score = 38.1 bits (87), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 6/135 (4%)

Query: 115 VMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIY 174
           V  SE +    VD+ Q L  +    P+    F T N   MH+ ++ +++    I K HI+
Sbjct: 239 VNASEMQKATAVDFDQLLEMVAVGFPKMRIRFSTSNPQDMHESILHVMAKYPNICK-HIH 297

Query: 175 TSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPE---SQELLAKVKTVIEKPHNDH 231
               SG+N  +        R + + +I    ++   P+   SQ+++A   T  E+ H D 
Sbjct: 298 LPVQSGSNRILKEMNRLHSREEYMALI--DKIRAIVPDASISQDMIAGFPTETEQDHQDT 355

Query: 232 LPLIEASRYTISFAF 246
           + L+E  +Y   + +
Sbjct: 356 MSLMEYVKYNFGYMY 370


>sp|A6H119|MIAB_FLAPJ (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
           OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC
           49511) GN=miaB PE=3 SV=1
          Length = 481

 Score = 35.8 bits (81), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 6/132 (4%)

Query: 118 SEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSG 177
           SE +    VD+ Q L  +    P+    F T N   MH+ ++ +++    I K HI+   
Sbjct: 242 SEIQKATAVDFDQLLEMVAVGFPKMRIRFSTSNPQDMHESILHVMAKHSNICK-HIHLPV 300

Query: 178 ASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPE---SQELLAKVKTVIEKPHNDHLPL 234
            SG+N  +        R + +  IL   ++   P    SQ+++A   T  E+ H D + L
Sbjct: 301 QSGSNRILKEMNRLHTREEYM--ILIDKIRAIIPNASISQDMIAGFPTETEEDHQDTISL 358

Query: 235 IEASRYTISFAF 246
           ++  +Y   + +
Sbjct: 359 MQYVKYNFGYMY 370


>sp|A9KHY6|DAPA_CLOPH 4-hydroxy-tetrahydrodipicolinate synthase OS=Clostridium
           phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
           GN=dapA PE=3 SV=1
          Length = 294

 Score = 33.9 bits (76), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 5/82 (6%)

Query: 107 SVVEGSGAVMVSEFKPVPDVDY--LQELLAIQ-QQGPRAIGFFGT--RNMGFMHQELIEI 161
           ++  G+G  +V+ FK   +V+Y  L EL+  Q   G  +I   GT   +    H+E IE 
Sbjct: 2   AIFTGAGVAIVTPFKENREVNYEKLGELIDFQINNGTDSIIICGTTGESSTLTHEEHIEC 61

Query: 162 LSYALVITKNHIYTSGASGTNA 183
           + +A+  TK  +     +G+N 
Sbjct: 62  IRFAIEYTKKRVPVIAGTGSNC 83


>sp|Q8KB05|MIAB_CHLTE (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
           OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 /
           TLS) GN=miaB PE=3 SV=1
          Length = 444

 Score = 32.3 bits (72), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)

Query: 171 NHIY---TSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKP 227
           NHI+    SG+S     + RG  R E  D + +I  +S   +   + +L+A   T  EK 
Sbjct: 263 NHIHLPVQSGSSRMLDLMKRGHTREEYLDRIAMI--RSYIPEVAITTDLIAGFCTETEKD 320

Query: 228 HNDHLPLIEASRYTISFAF 246
           H + L L+EA  Y  +F F
Sbjct: 321 HRETLSLMEAVGYDTAFMF 339


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.133    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,735,414
Number of Sequences: 539616
Number of extensions: 3789712
Number of successful extensions: 9459
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 9456
Number of HSP's gapped (non-prelim): 6
length of query: 250
length of database: 191,569,459
effective HSP length: 115
effective length of query: 135
effective length of database: 129,513,619
effective search space: 17484338565
effective search space used: 17484338565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)