Query 025622
Match_columns 250
No_of_seqs 57 out of 59
Neff 2.0
Searched_HMMs 46136
Date Fri Mar 29 07:43:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025622.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025622hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02481 DNA_processg_A: DNA r 98.4 1.2E-06 2.7E-11 74.5 8.4 82 138-221 42-124 (212)
2 TIGR00732 dprA DNA protecting 97.8 0.00012 2.5E-09 63.1 8.9 79 141-221 45-124 (220)
3 TIGR00725 conserved hypothetic 97.3 0.00061 1.3E-08 56.0 6.4 65 141-207 2-66 (159)
4 PRK10736 hypothetical protein; 96.6 0.011 2.4E-07 55.7 9.0 79 141-221 108-187 (374)
5 COG0758 Smf Predicted Rossmann 95.0 0.22 4.8E-06 46.8 10.2 115 88-222 76-192 (350)
6 TIGR00730 conserved hypothetic 93.0 0.3 6.4E-06 41.3 6.2 65 141-207 1-68 (178)
7 COG1611 Predicted Rossmann fol 86.5 2.8 6E-05 36.4 6.9 73 136-210 10-85 (205)
8 PRK13660 hypothetical protein; 83.9 8.2 0.00018 33.5 8.4 82 141-222 2-100 (182)
9 PF06908 DUF1273: Protein of u 80.2 12 0.00026 31.9 8.1 80 141-222 2-100 (177)
10 TIGR02668 moaA_archaeal probab 78.7 7.9 0.00017 33.5 6.6 39 128-168 45-83 (302)
11 PRK13361 molybdenum cofactor b 77.0 15 0.00032 32.9 8.0 35 134-170 56-90 (329)
12 cd01391 Periplasmic_Binding_Pr 72.7 30 0.00064 26.1 7.5 58 134-192 118-179 (269)
13 PRK09331 Sep-tRNA:Cys-tRNA syn 70.8 5.6 0.00012 35.5 3.8 46 145-192 56-101 (387)
14 PF01408 GFO_IDH_MocA: Oxidore 69.9 8.9 0.00019 28.0 4.1 52 186-241 54-106 (120)
15 TIGR02109 PQQ_syn_pqqE coenzym 69.6 27 0.0006 31.0 7.8 72 136-215 50-122 (358)
16 PRK00164 moaA molybdenum cofac 66.8 23 0.0005 31.2 6.8 39 128-168 54-92 (331)
17 PF13353 Fer4_12: 4Fe-4S singl 66.5 10 0.00022 28.5 3.9 58 126-185 38-100 (139)
18 COG1313 PflX Uncharacterized F 63.8 12 0.00027 35.9 4.8 75 85-178 128-202 (335)
19 PRK05301 pyrroloquinoline quin 61.6 56 0.0012 29.5 8.3 72 136-215 59-131 (378)
20 PF04055 Radical_SAM: Radical 60.0 34 0.00074 24.8 5.6 73 127-202 32-108 (166)
21 KOG2235 Uncharacterized conser 59.9 0.9 2E-05 47.0 -3.6 151 71-229 63-228 (776)
22 PLN03032 serine decarboxylase; 57.4 23 0.00049 33.1 5.3 65 126-191 35-107 (374)
23 cd01820 PAF_acetylesterase_lik 53.7 46 0.001 27.1 6.0 70 128-202 17-97 (214)
24 PLN02951 Molybderin biosynthes 51.5 41 0.00088 31.3 5.9 41 128-170 95-135 (373)
25 cd02951 SoxW SoxW family; SoxW 50.9 31 0.00067 25.8 4.2 33 127-159 1-34 (125)
26 TIGR01706 NAPA periplasmic nit 50.8 38 0.00083 34.3 6.1 37 119-155 115-156 (830)
27 TIGR03470 HpnH hopanoid biosyn 49.7 1.2E+02 0.0027 27.3 8.5 40 134-175 67-106 (318)
28 cd06452 SepCysS Sep-tRNA:Cys-t 49.5 22 0.00049 31.0 3.7 22 224-245 145-169 (361)
29 PF10686 DUF2493: Protein of u 46.2 72 0.0016 23.6 5.4 50 141-191 4-55 (71)
30 PF02875 Mur_ligase_C: Mur lig 46.0 31 0.00066 24.9 3.4 58 120-178 20-80 (91)
31 COG1104 NifS Cysteine sulfinat 45.9 15 0.00033 35.5 2.3 25 169-193 61-85 (386)
32 TIGR02351 thiH thiazole biosyn 45.8 39 0.00084 31.1 4.8 42 126-167 105-148 (366)
33 PRK10200 putative racemase; Pr 45.3 21 0.00045 30.9 2.8 29 122-150 98-127 (230)
34 PHA00619 CRISPR-associated Cas 44.9 26 0.00056 30.0 3.3 77 154-250 119-197 (201)
35 TIGR03365 Bsubt_queE 7-cyano-7 44.6 72 0.0016 27.6 6.0 49 127-178 60-110 (238)
36 cd01425 RPS2 Ribosomal protein 43.8 99 0.0021 26.2 6.6 46 139-190 55-103 (193)
37 cd01835 SGNH_hydrolase_like_3 43.7 78 0.0017 24.9 5.6 64 140-203 1-78 (193)
38 PF03807 F420_oxidored: NADP o 43.4 23 0.0005 25.1 2.4 26 142-174 1-29 (96)
39 cd06150 YjgF_YER057c_UK114_lik 42.8 15 0.00032 27.7 1.4 16 168-183 8-23 (105)
40 PF01042 Ribonuc_L-PSP: Endori 42.2 9.5 0.00021 29.2 0.3 43 168-223 16-58 (121)
41 TIGR03576 pyridox_MJ0158 pyrid 41.9 36 0.00079 30.7 4.0 40 153-192 54-94 (346)
42 cd00408 DHDPS-like Dihydrodipi 41.7 2.3E+02 0.0049 24.4 11.1 95 128-226 20-121 (281)
43 cd01537 PBP1_Repressors_Sugar_ 41.6 1.6E+02 0.0035 22.7 7.1 36 135-170 113-148 (264)
44 cd06502 TA_like Low-specificit 41.6 38 0.00082 28.6 3.8 17 159-175 60-76 (338)
45 COG3976 Uncharacterized protei 41.5 15 0.00032 31.6 1.4 46 155-229 90-135 (135)
46 TIGR00696 wecB_tagA_cpsF bacte 41.5 2.1E+02 0.0045 24.3 8.2 78 120-203 28-109 (177)
47 TIGR01275 ACC_deam_rel pyridox 40.7 78 0.0017 27.7 5.7 52 153-204 39-90 (311)
48 cd01542 PBP1_TreR_like Ligand- 40.6 1.7E+02 0.0037 23.2 7.2 66 137-205 111-181 (259)
49 PF01930 Cas_Cas4: Domain of u 40.6 32 0.00069 27.2 3.0 79 156-250 81-160 (162)
50 KOG1549 Cysteine desulfurase N 40.4 19 0.00042 35.4 2.2 28 168-195 101-128 (428)
51 PRK03910 D-cysteine desulfhydr 40.1 85 0.0018 28.1 6.0 55 153-207 47-101 (331)
52 cd00758 MoCF_BD MoCF_BD: molyb 39.9 37 0.0008 26.6 3.3 50 128-183 23-72 (133)
53 cd06267 PBP1_LacI_sugar_bindin 39.6 1.8E+02 0.0039 22.6 7.4 34 137-170 113-146 (264)
54 TIGR00177 molyb_syn molybdenum 39.6 62 0.0013 25.8 4.5 50 128-183 31-80 (144)
55 PF09314 DUF1972: Domain of un 39.3 39 0.00084 29.3 3.6 37 141-177 2-43 (185)
56 TIGR00423 radical SAM domain p 39.2 65 0.0014 28.6 5.1 38 184-223 149-186 (309)
57 cd06207 CyPoR_like NADPH cytoc 39.1 1.7E+02 0.0037 26.8 7.8 64 128-191 280-351 (382)
58 TIGR00035 asp_race aspartate r 39.1 23 0.00051 30.0 2.2 29 122-150 98-127 (229)
59 cd06286 PBP1_CcpB_like Ligand- 39.0 2E+02 0.0043 23.0 7.3 36 135-170 109-144 (260)
60 PRK13762 tRNA-modifying enzyme 38.6 1.9E+02 0.004 26.6 8.0 66 140-215 130-196 (322)
61 COG0031 CysK Cysteine synthase 38.2 54 0.0012 30.8 4.5 67 155-228 43-116 (300)
62 PRK13532 nitrate reductase cat 37.9 81 0.0017 31.9 6.0 38 119-156 115-157 (830)
63 TIGR00124 cit_ly_ligase [citra 37.6 42 0.00091 31.2 3.7 37 123-160 121-160 (332)
64 COG1922 WecG Teichoic acid bio 37.1 1.7E+02 0.0037 27.0 7.5 74 122-202 90-169 (253)
65 PRK11064 wecC UDP-N-acetyl-D-m 37.0 1.1E+02 0.0023 28.8 6.3 29 140-175 3-31 (415)
66 PF11868 DUF3388: Protein of u 36.5 40 0.00087 30.4 3.3 89 126-228 42-144 (192)
67 PF09743 DUF2042: Uncharacteri 36.4 7.8 0.00017 35.2 -1.1 112 77-192 66-188 (272)
68 TIGR02666 moaA molybdenum cofa 36.3 84 0.0018 27.8 5.3 39 128-168 48-86 (334)
69 PLN02778 3,5-epimerase/4-reduc 36.0 1E+02 0.0022 26.9 5.7 55 137-197 6-60 (298)
70 cd06450 DOPA_deC_like DOPA dec 35.9 75 0.0016 27.0 4.7 40 152-191 37-79 (345)
71 PF03808 Glyco_tran_WecB: Glyc 35.7 2.5E+02 0.0054 23.1 8.4 77 121-203 29-110 (172)
72 TIGR00250 RNAse_H_YqgF RNAse H 35.6 1.4E+02 0.003 24.1 6.0 76 137-225 4-79 (130)
73 COG3479 Phenolic acid decarbox 35.3 20 0.00043 31.7 1.2 18 223-240 97-120 (175)
74 PF00994 MoCF_biosynth: Probab 35.0 48 0.001 26.0 3.2 50 128-183 21-70 (144)
75 PF14838 INTS5_C: Integrator c 34.9 8.9 0.00019 39.7 -1.1 38 209-246 272-310 (696)
76 PF01972 SDH_sah: Serine dehyd 34.9 76 0.0017 30.0 5.0 68 136-204 45-127 (285)
77 PRK06256 biotin synthase; Vali 34.6 2.2E+02 0.0047 25.3 7.6 65 127-192 95-161 (336)
78 cd01937 ribokinase_group_D Rib 34.5 33 0.00072 28.2 2.3 48 142-202 1-48 (254)
79 cd01494 AAT_I Aspartate aminot 34.4 51 0.0011 24.0 3.1 14 232-245 109-122 (170)
80 cd00609 AAT_like Aspartate ami 34.3 71 0.0015 26.3 4.2 20 171-190 61-80 (350)
81 PRK03321 putative aminotransfe 33.9 37 0.00081 29.4 2.7 21 170-190 75-95 (352)
82 COG5039 Exopolysaccharide bios 33.6 1.2E+02 0.0026 29.5 6.1 67 128-225 74-144 (339)
83 PF12308 Noelin-1: Neurogenesi 33.2 41 0.00089 27.7 2.6 32 192-223 14-52 (101)
84 PRK13520 L-tyrosine decarboxyl 33.1 73 0.0016 27.3 4.3 36 155-190 61-97 (371)
85 cd06155 eu_AANH_C_1 A group of 32.4 40 0.00086 25.3 2.3 14 169-182 6-19 (101)
86 TIGR02493 PFLA pyruvate format 32.3 89 0.0019 25.8 4.5 25 141-167 67-92 (235)
87 cd00885 cinA Competence-damage 32.2 56 0.0012 27.3 3.3 50 128-183 23-72 (170)
88 PLN03075 nicotianamine synthas 32.0 1.2E+02 0.0026 28.3 5.7 29 130-158 111-142 (296)
89 smart00852 MoCF_biosynth Proba 32.0 54 0.0012 25.4 3.0 47 128-182 22-70 (135)
90 PLN02822 serine palmitoyltrans 31.7 43 0.00094 31.8 2.9 47 144-191 142-191 (481)
91 cd00615 Orn_deC_like Ornithine 31.4 69 0.0015 27.6 3.8 85 157-246 86-184 (294)
92 PRK02769 histidine decarboxyla 31.2 69 0.0015 29.7 4.1 49 154-204 66-117 (380)
93 PRK08133 O-succinylhomoserine 30.8 97 0.0021 28.4 4.9 25 223-247 151-178 (390)
94 PLN03083 E3 UFM1-protein ligas 30.7 19 0.00041 38.0 0.4 109 80-192 73-191 (803)
95 PRK14072 6-phosphofructokinase 30.5 25 0.00055 33.6 1.2 20 173-192 8-32 (416)
96 PF10727 Rossmann-like: Rossma 30.4 61 0.0013 26.3 3.2 32 136-174 6-37 (127)
97 cd06287 PBP1_LacI_like_8 Ligan 30.3 3.2E+02 0.007 22.8 7.6 36 134-170 112-148 (269)
98 PRK05406 LamB/YcsF family prot 30.0 52 0.0011 30.2 3.0 59 146-205 72-148 (246)
99 PRK13392 5-aminolevulinate syn 29.8 51 0.0011 29.5 2.9 25 223-247 183-210 (410)
100 PRK14045 1-aminocyclopropane-1 29.5 1.4E+02 0.0029 26.9 5.5 53 153-205 53-105 (329)
101 TIGR03812 tyr_de_CO2_Arch tyro 29.4 69 0.0015 27.6 3.5 36 154-189 60-96 (373)
102 TIGR02667 moaB_proteo molybden 29.1 65 0.0014 26.6 3.2 45 135-182 31-76 (163)
103 PRK08361 aspartate aminotransf 29.0 60 0.0013 28.8 3.2 22 156-177 103-124 (391)
104 PRK09613 thiH thiamine biosynt 28.9 1E+02 0.0022 30.2 4.9 41 126-166 117-159 (469)
105 PF13377 Peripla_BP_3: Peripla 28.7 1.7E+02 0.0037 21.7 5.1 26 135-160 4-30 (160)
106 PRK07324 transaminase; Validat 28.6 47 0.001 29.6 2.5 21 156-176 90-110 (373)
107 cd06449 ACCD Aminocyclopropane 28.5 1.9E+02 0.0041 25.5 6.2 49 158-207 40-89 (307)
108 PF03721 UDPG_MGDP_dh_N: UDP-g 28.5 65 0.0014 27.0 3.1 38 141-188 1-38 (185)
109 cd02750 MopB_Nitrate-R-NarG-li 28.1 1.2E+02 0.0026 28.3 5.0 41 119-159 81-127 (461)
110 KOG4435 Predicted lipid kinase 27.9 74 0.0016 32.3 3.9 57 143-205 95-152 (535)
111 cd06359 PBP1_Nba_like Type I p 27.8 2E+02 0.0043 24.6 6.0 68 132-203 126-195 (333)
112 cd01829 SGNH_hydrolase_peri2 S 27.8 1.5E+02 0.0033 23.2 5.0 58 142-202 1-67 (200)
113 PRK03604 moaC bifunctional mol 27.5 60 0.0013 30.3 3.0 51 128-183 179-229 (312)
114 cd02762 MopB_1 The MopB_1 CD i 27.5 1.6E+02 0.0035 28.0 5.9 31 119-149 65-100 (539)
115 PF03059 NAS: Nicotianamine sy 27.5 59 0.0013 29.9 2.9 30 130-159 108-140 (276)
116 PF00175 NAD_binding_1: Oxidor 27.4 87 0.0019 22.3 3.3 59 128-186 41-108 (109)
117 PRK09064 5-aminolevulinate syn 27.3 67 0.0014 28.6 3.2 26 223-248 183-211 (407)
118 cd00886 MogA_MoaB MogA_MoaB fa 26.9 79 0.0017 25.4 3.3 31 152-182 43-74 (152)
119 COG1794 RacX Aspartate racemas 26.8 44 0.00095 30.7 2.0 29 121-149 97-126 (230)
120 PRK03670 competence damage-ind 26.8 64 0.0014 28.9 3.0 33 151-183 42-74 (252)
121 cd02763 MopB_2 The MopB_2 CD i 26.7 1.5E+02 0.0032 30.3 5.8 54 119-177 69-126 (679)
122 PF02609 Exonuc_VII_S: Exonucl 26.5 36 0.00079 23.6 1.1 25 216-240 4-28 (53)
123 COG0205 PfkA 6-phosphofructoki 26.5 40 0.00086 32.1 1.7 18 173-191 7-26 (347)
124 PF00365 PFK: Phosphofructokin 26.1 35 0.00076 30.8 1.2 26 141-166 1-27 (282)
125 cd06200 SiR_like1 Cytochrome p 25.8 3.7E+02 0.0081 22.9 7.3 64 128-191 154-224 (245)
126 cd00950 DHDPS Dihydrodipicolin 25.7 4.4E+02 0.0095 22.8 11.1 95 128-226 23-124 (284)
127 PTZ00254 40S ribosomal protein 25.7 1.7E+02 0.0036 27.0 5.5 75 132-242 65-142 (249)
128 COG1669 Predicted nucleotidylt 25.6 56 0.0012 26.4 2.1 16 133-148 16-32 (97)
129 PRK14489 putative bifunctional 25.4 1.8E+02 0.0038 26.8 5.6 50 124-175 182-238 (366)
130 cd06221 sulfite_reductase_like 25.0 95 0.0021 26.5 3.6 60 128-191 144-211 (253)
131 TIGR01931 cysJ sulfite reducta 24.8 3E+02 0.0064 27.4 7.3 60 128-187 496-562 (597)
132 TIGR01274 ACC_deam 1-aminocycl 24.5 2.6E+02 0.0056 25.2 6.4 50 156-205 52-101 (337)
133 PRK01278 argD acetylornithine 24.4 1.6E+02 0.0035 26.1 5.0 35 170-204 89-127 (389)
134 PF06506 PrpR_N: Propionate ca 24.3 71 0.0015 26.1 2.6 58 126-184 64-139 (176)
135 cd01822 Lysophospholipase_L1_l 24.2 2E+02 0.0044 21.8 4.9 13 155-167 49-61 (177)
136 PRK03244 argD acetylornithine 24.2 79 0.0017 28.0 3.1 23 223-245 188-217 (398)
137 PRK07179 hypothetical protein; 24.2 69 0.0015 28.7 2.7 26 223-248 186-214 (407)
138 TIGR03700 mena_SCO4494 putativ 24.2 1.6E+02 0.0034 26.9 5.0 38 128-165 84-121 (351)
139 PF13884 Peptidase_S74: Chaper 24.2 44 0.00096 22.8 1.2 17 146-162 40-56 (58)
140 cd06201 SiR_like2 Cytochrome p 24.1 3.3E+02 0.0071 24.0 6.8 64 128-191 198-266 (289)
141 COG1597 LCB5 Sphingosine kinas 24.1 3.1E+02 0.0067 24.8 6.8 66 130-201 24-89 (301)
142 COG0318 CaiC Acyl-CoA syntheta 23.9 77 0.0017 29.6 3.1 19 173-191 177-208 (534)
143 smart00729 Elp3 Elongator prot 23.9 3.2E+02 0.007 20.6 9.8 82 128-214 35-126 (216)
144 cd00368 Molybdopterin-Binding 23.7 2.4E+02 0.0053 24.4 5.9 58 119-178 67-129 (374)
145 PRK04020 rps2P 30S ribosomal p 23.7 2.9E+02 0.0062 24.6 6.4 73 136-242 63-138 (204)
146 KOG2174 Leptin receptor gene-r 23.5 45 0.00098 28.6 1.3 44 128-175 65-110 (131)
147 TIGR01822 2am3keto_CoA 2-amino 23.2 1.2E+02 0.0026 26.6 3.9 46 146-192 73-121 (393)
148 PF13458 Peripla_BP_6: Peripla 23.0 4.5E+02 0.0097 21.9 8.9 71 128-200 121-196 (343)
149 PRK00950 histidinol-phosphate 23.0 70 0.0015 27.6 2.4 45 128-177 74-118 (361)
150 PRK12390 1-aminocyclopropane-1 23.0 2.8E+02 0.006 24.9 6.3 30 155-184 52-81 (337)
151 TIGR01085 murE UDP-N-acetylmur 23.0 5.5E+02 0.012 23.9 8.3 63 120-187 338-405 (464)
152 cd06274 PBP1_FruR Ligand bindi 22.8 2E+02 0.0044 23.0 4.9 34 137-170 113-146 (264)
153 cd00616 AHBA_syn 3-amino-5-hyd 22.7 1.2E+02 0.0026 25.8 3.7 23 224-246 112-134 (352)
154 PRK14064 exodeoxyribonuclease 22.6 89 0.0019 23.7 2.7 28 212-239 7-34 (75)
155 cd00953 KDG_aldolase KDG (2-ke 22.4 5.4E+02 0.012 22.7 11.8 89 117-207 9-104 (279)
156 PRK07777 aminotransferase; Val 22.4 60 0.0013 28.7 1.9 18 159-176 98-115 (387)
157 cd06451 AGAT_like Alanine-glyo 22.4 1.1E+02 0.0023 26.4 3.4 22 225-246 134-155 (356)
158 PRK12583 acyl-CoA synthetase; 22.4 91 0.002 28.1 3.1 10 172-181 206-215 (558)
159 cd06298 PBP1_CcpA_like Ligand- 22.2 4.1E+02 0.0088 21.1 7.0 30 137-166 113-143 (268)
160 PRK06555 pyrophosphate--fructo 22.2 47 0.001 32.2 1.4 18 173-191 8-27 (403)
161 PRK14068 exodeoxyribonuclease 22.1 89 0.0019 23.9 2.6 27 214-240 9-35 (76)
162 cd02754 MopB_Nitrate-R-NapA-li 22.1 1.8E+02 0.0039 27.6 5.1 41 119-159 66-111 (565)
163 PRK07094 biotin synthase; Prov 21.9 2E+02 0.0044 25.3 5.1 40 128-167 75-114 (323)
164 cd02755 MopB_Thiosulfate-R-lik 21.9 2E+02 0.0044 26.7 5.3 47 126-177 80-128 (454)
165 PF14734 DUF4469: Domain of un 21.8 57 0.0012 26.0 1.5 30 179-208 47-76 (102)
166 cd02759 MopB_Acetylene-hydrata 21.7 2.4E+02 0.0052 26.3 5.8 51 126-178 79-133 (477)
167 PRK09082 methionine aminotrans 21.7 1E+02 0.0022 27.4 3.3 22 156-177 101-122 (386)
168 cd06259 YdcF-like YdcF-like. Y 21.6 3.8E+02 0.0082 20.6 7.7 23 170-192 35-62 (150)
169 TIGR01280 xseB exodeoxyribonuc 21.6 74 0.0016 23.5 2.0 26 215-240 5-30 (67)
170 PRK02948 cysteine desulfurase; 21.6 1.2E+02 0.0026 26.6 3.6 19 227-245 150-168 (381)
171 PRK06756 flavodoxin; Provision 21.6 1E+02 0.0022 24.0 2.9 29 121-150 63-93 (148)
172 TIGR00372 cas4 CRISPR-associat 21.5 48 0.001 26.1 1.1 80 155-250 95-176 (178)
173 PRK06939 2-amino-3-ketobutyrat 21.3 95 0.0021 26.8 2.9 16 232-247 191-206 (397)
174 TIGR02495 NrdG2 anaerobic ribo 21.3 2.8E+02 0.0061 22.2 5.4 40 128-171 52-91 (191)
175 cd01544 PBP1_GalR Ligand-bindi 21.3 4.5E+02 0.0098 21.4 7.4 34 137-170 109-147 (270)
176 PF00490 ALAD: Delta-aminolevu 21.3 1E+02 0.0022 29.6 3.3 69 126-194 56-185 (324)
177 PRK11041 DNA-binding transcrip 21.3 2E+02 0.0042 23.8 4.6 33 135-167 147-179 (309)
178 PF01118 Semialdhyde_dh: Semia 21.1 1.1E+02 0.0023 23.4 2.9 45 142-188 1-46 (121)
179 PRK09240 thiH thiamine biosynt 21.1 2E+02 0.0043 26.7 5.1 39 127-165 108-147 (371)
180 PRK13384 delta-aminolevulinic 21.0 1.2E+02 0.0026 29.2 3.7 23 126-148 60-83 (322)
181 PF03279 Lip_A_acyltrans: Bact 21.0 28 0.00061 30.0 -0.4 15 50-64 281-295 (295)
182 PLN03227 serine palmitoyltrans 21.0 2E+02 0.0043 26.3 5.0 55 133-191 23-80 (392)
183 cd04824 eu_ALAD_PBGS_cysteine_ 20.9 1.2E+02 0.0027 29.1 3.8 23 126-148 50-73 (320)
184 PRK08912 hypothetical protein; 20.8 1.1E+02 0.0024 27.1 3.2 20 171-190 89-108 (387)
185 PRK08905 lipid A biosynthesis 20.7 36 0.00077 29.9 0.2 15 50-64 260-274 (289)
186 cd00763 Bacterial_PFK Phosphof 20.7 52 0.0011 30.4 1.3 11 173-183 5-17 (317)
187 PRK07309 aromatic amino acid a 20.6 1.4E+02 0.003 26.7 3.9 22 156-177 101-122 (391)
188 cd06289 PBP1_MalI_like Ligand- 20.5 4.4E+02 0.0095 20.9 6.8 35 136-170 113-147 (268)
189 PRK05764 aspartate aminotransf 20.4 97 0.0021 27.2 2.8 21 157-177 102-122 (393)
190 KOG3728 Uridine phosphorylase 20.4 94 0.002 29.7 2.9 94 146-243 108-210 (308)
191 PRK07682 hypothetical protein; 20.4 1.6E+02 0.0034 25.9 4.1 22 156-177 91-112 (378)
192 cd06277 PBP1_LacI_like_1 Ligan 20.4 2.3E+02 0.0051 22.8 4.8 34 135-168 113-146 (268)
193 TIGR01825 gly_Cac_T_rel pyrido 20.2 97 0.0021 26.9 2.7 17 231-247 179-195 (385)
194 PLN02564 6-phosphofructokinase 20.1 61 0.0013 32.3 1.7 39 135-192 72-112 (484)
No 1
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=98.41 E-value=1.2e-06 Score=74.45 Aligned_cols=82 Identities=26% Similarity=0.316 Sum_probs=62.0
Q ss_pred cCCceEEEecccccchhHHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccC-CChhHHHH
Q 025622 138 QGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKK-QPPESQEL 216 (250)
Q Consensus 138 ~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~P~lLTViLPQSL~k-Qp~Es~el 216 (250)
.-.+.|||.|||+..=-.++..+-+.+.|+..|..|++.+|.|+.+++.+|||++ +...+ +|||..|++ .|.|.+++
T Consensus 42 ~~~~~iaIvGsR~~s~~g~~~a~~l~~~l~~~g~~vvSGlA~GiD~~ah~~al~~-~g~tI-aVl~~gl~~~yP~~n~~l 119 (212)
T PF02481_consen 42 NKQPSIAIVGSRNPSEYGLKFAKKLARELAKAGIVVVSGLAKGIDAAAHRGALDA-GGPTI-AVLACGLDNIYPKENREL 119 (212)
T ss_dssp GGS-EEEEE--SS--HHHHHHHHHHHHHHHHHT-EEEE---TTHHHHHHHHHTTT----EE-EE-SS-TTS-SSGGGHHH
T ss_pred ccCceEEEEcCCCCCHHHHHHHHHHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHc-cCCEE-EEECCCcccccchhhHHH
Confidence 3478999999999999999999999999999999999999999999999999999 44444 457999987 59999999
Q ss_pred HHHHh
Q 025622 217 LAKVK 221 (250)
Q Consensus 217 Le~V~ 221 (250)
.+++.
T Consensus 120 ~~~i~ 124 (212)
T PF02481_consen 120 AERIL 124 (212)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99988
No 2
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=97.82 E-value=0.00012 Score=63.09 Aligned_cols=79 Identities=22% Similarity=0.262 Sum_probs=69.9
Q ss_pred ceEEEecccccchhHHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccCC-ChhHHHHHHH
Q 025622 141 RAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQ-PPESQELLAK 219 (250)
Q Consensus 141 rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~P~lLTViLPQSL~kQ-p~Es~elLe~ 219 (250)
+.|||.|||+..--..++.+-+++.|+..|-.|++-||-|+-+|+.|||+++.. .--.|||..|++- |.|.+++.++
T Consensus 45 ~~iaIvGsR~~s~~~~~~a~~l~~~l~~~g~~IVSG~A~GiD~~ah~~al~~~g--~tIaVl~~gld~~yp~~n~~l~~~ 122 (220)
T TIGR00732 45 RKVAIVGTRRPTKYGERWTRKLAEELAKNGVTIVSGLALGIDGIAHKAALKVNG--RTIAVLGTGLDQIYPRQNSKLAAK 122 (220)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHHhCCCEEEcCchhhHHHHHHHHHHHcCC--CEEEEECCCCccCCchhhHHHHHH
Confidence 789999999998889999999999999999999999999999999999999832 3335899999886 7888999988
Q ss_pred Hh
Q 025622 220 VK 221 (250)
Q Consensus 220 V~ 221 (250)
+.
T Consensus 123 i~ 124 (220)
T TIGR00732 123 IA 124 (220)
T ss_pred HH
Confidence 86
No 3
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=97.33 E-value=0.00061 Score=56.02 Aligned_cols=65 Identities=26% Similarity=0.238 Sum_probs=56.4
Q ss_pred ceEEEecccccchhHHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhhcCCCceeEeeccccc
Q 025622 141 RAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLK 207 (250)
Q Consensus 141 rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~P~lLTViLPQSL~ 207 (250)
|+||++|+|+.+=-+++..+-+.+.|+..|+.|++=|+.|.=.|+-|||+++ ... ..=|||+.+.
T Consensus 2 ~~I~V~gss~~~~~~~~~A~~lg~~La~~g~~lv~Gg~~GlM~a~a~ga~~~-gg~-viGVlp~~l~ 66 (159)
T TIGR00725 2 VQIGVIGSSNKSEELYEIAYRLGKELAKKGHILINGGRTGVMEAVSKGAREA-GGL-VVGILPDEDF 66 (159)
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEcCCchhHHHHHHHHHHHC-CCe-EEEECChhhc
Confidence 7899999999988999999999999999999999978899999999999988 332 2336898874
No 4
>PRK10736 hypothetical protein; Provisional
Probab=96.64 E-value=0.011 Score=55.73 Aligned_cols=79 Identities=18% Similarity=0.229 Sum_probs=67.5
Q ss_pred ceEEEecccccchhHHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccC-CChhHHHHHHH
Q 025622 141 RAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKK-QPPESQELLAK 219 (250)
Q Consensus 141 rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~P~lLTViLPQSL~k-Qp~Es~elLe~ 219 (250)
+.|||.|||++.---....+-+++.|+..|-.|+.-+|-|+-+++-+|||.+.. .--.||+-.|++ -|+|.+++.++
T Consensus 108 ~~iaiVGsR~~s~yg~~~~~~l~~~la~~g~~IVSGlA~GiD~~AH~~aL~~~g--~TIaVlg~Gld~~YP~~n~~L~~~ 185 (374)
T PRK10736 108 PQLAVVGSRAHSWYGERWGRLFCEELAKNGLTITSGLARGIDGVAHRAALQAGG--KTIAVLGNGLENIYPRRHARLAES 185 (374)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEECcchhhHHHHHHHHHHHcCC--CEEEEECCCCCccCCHhHHHHHHH
Confidence 679999999999999999999999999988766666689999999999999843 234488999987 48899999999
Q ss_pred Hh
Q 025622 220 VK 221 (250)
Q Consensus 220 V~ 221 (250)
+.
T Consensus 186 I~ 187 (374)
T PRK10736 186 II 187 (374)
T ss_pred HH
Confidence 83
No 5
>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=95.05 E-value=0.22 Score=46.81 Aligned_cols=115 Identities=19% Similarity=0.269 Sum_probs=87.5
Q ss_pred cccccCCccccCCCCccchhhhcccceeeecccccCCChhHHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHH
Q 025622 88 IGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALV 167 (250)
Q Consensus 88 ~~~f~~d~~~~~~iptq~~~vv~g~~~v~~~~~~~~p~vD~lqELaaIQq~g~rrIa~lGsRhv~~~hq~LIEllsyAlv 167 (250)
..+++-+|+ +-|..-..+-..+..+-.+. ++|++.+ +.+||+|||++.-.-.+..+.++..|+
T Consensus 76 ~~~i~~~d~---~YP~~Lk~i~~pP~vLf~kG-----nl~ll~~---------~~vaIVGsR~~S~~g~~~~~~~a~~L~ 138 (350)
T COG0758 76 IKIITLGDE---DYPKLLKEINDPPPVLFYKG-----NLDLLEA---------PSVAIVGSRKPSKYGLDYTRDLAEYLA 138 (350)
T ss_pred CeEeccCCc---cchHHHHhccCCCeEEEEec-----CHhHhcc---------CceEEEeCCCCCHhHHHHHHHHHHHHH
Confidence 446666555 67777666666555444333 2444433 889999999999999999999999999
Q ss_pred HhCCceeecCCCCchHHHHHhhhhhcCCCceeE-eecccccCC-ChhHHHHHHHHhh
Q 025622 168 ITKNHIYTSGASGTNAAVIRGALRAERPDLLTV-ILPQSLKKQ-PPESQELLAKVKT 222 (250)
Q Consensus 168 l~gn~i~TSGA~GtNaAvIRGalrae~P~lLTV-iLPQSL~kQ-p~Es~elLe~V~~ 222 (250)
..|--|++-+|-|.-+++-++||.+. -.|| ||.-.+++= |++-+.+.+++..
T Consensus 139 ~~g~~IvSGlA~GID~~AH~aaL~~~---G~TiaVl~~Gld~iYP~~n~~l~~~i~~ 192 (350)
T COG0758 139 QNGITIVSGLARGIDTEAHKAALNAG---GKTIAVLATGLDKIYPRENIKLAEKIAE 192 (350)
T ss_pred hCCeEEEecCcceecHHHHHHHHHcC---CcEEEEEcCCCCccCChhhHHHHHHHHh
Confidence 99999999999999999999999994 3465 667777764 5677777777654
No 6
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=93.04 E-value=0.3 Score=41.27 Aligned_cols=65 Identities=17% Similarity=0.114 Sum_probs=50.6
Q ss_pred ceEEEecccccchh--HHHHHHHHHHHHHHhCCceeecCC-CCchHHHHHhhhhhcCCCceeEeeccccc
Q 025622 141 RAIGFFGTRNMGFM--HQELIEILSYALVITKNHIYTSGA-SGTNAAVIRGALRAERPDLLTVILPQSLK 207 (250)
Q Consensus 141 rrIa~lGsRhv~~~--hq~LIEllsyAlvl~gn~i~TSGA-~GtNaAvIRGalrae~P~lLTViLPQSL~ 207 (250)
|+||++|+-..+.- +.+..+-+.+.|+..|+.|+|-|+ .|.=-||-|||+++. - ...=|+|+.|.
T Consensus 1 ~~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GGg~~GlM~a~a~ga~~~g-G-~viGi~p~~l~ 68 (178)
T TIGR00730 1 KTVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGGGRVGLMGAIADAAMENG-G-TAVGVNPSGLF 68 (178)
T ss_pred CEEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCChHhHHHHHHHHHHhcC-C-eEEEecchhhh
Confidence 58999988665433 445677789999999999999997 899999999998873 2 23347888764
No 7
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=86.53 E-value=2.8 Score=36.44 Aligned_cols=73 Identities=33% Similarity=0.302 Sum_probs=55.7
Q ss_pred HhcCCceEEEe-cccc--cchhHHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCC
Q 025622 136 QQQGPRAIGFF-GTRN--MGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQP 210 (250)
Q Consensus 136 Qq~g~rrIa~l-GsRh--v~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~P~lLTViLPQSL~kQp 210 (250)
-+.+-+.|+++ |+.+ .+--..++-.-+.++++.-|+-|||=|..|+=.||-|||+++ -...+=|+|.++..|-
T Consensus 10 ~~~~~~~i~V~~gs~~~~~~~~~~~~a~~lg~~la~~g~~V~tGG~~GiMea~~~gA~~~--gg~~vGi~p~~~~~~e 85 (205)
T COG1611 10 LFIGIRQIVVICGSARGIEPEEYYELARELGRELAKRGLLVITGGGPGVMEAVARGALEA--GGLVVGILPGLLHEQE 85 (205)
T ss_pred cccCcceEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEeCCchhhhhHHHHHHHHc--CCeEEEecCCCchhhc
Confidence 34567777765 4554 444456777788999999999999999999999999999965 3445557888877663
No 8
>PRK13660 hypothetical protein; Provisional
Probab=83.85 E-value=8.2 Score=33.48 Aligned_cols=82 Identities=26% Similarity=0.297 Sum_probs=54.7
Q ss_pred ceEEEecccccch------------hHHHHHHHHHHHHHHhCCceeecCCCCch--HHHHHhhhhhcCCCc-eeEeeccc
Q 025622 141 RAIGFFGTRNMGF------------MHQELIEILSYALVITKNHIYTSGASGTN--AAVIRGALRAERPDL-LTVILPQS 205 (250)
Q Consensus 141 rrIa~lGsRhv~~------------~hq~LIEllsyAlvl~gn~i~TSGA~GtN--aAvIRGalrae~P~l-LTViLPQS 205 (250)
++++|-|-|...+ +-..|-+-|..++-..=-++||+||-|+- ||=+--.|+.+-|++ |-+++|=.
T Consensus 2 k~~~~TGyR~~el~~f~~~dp~~~~IK~aL~~~l~~~~e~G~~wfi~ggalG~d~wAaEvvl~LK~~yp~lkL~~~~PF~ 81 (182)
T PRK13660 2 KRLLVTGYKSFELGIFKDKDPKIKYIKKAIKRKLIALLEEGLEWVIISGQLGVELWAAEVVLELKEEYPDLKLAVITPFE 81 (182)
T ss_pred eEEEEeccCcccCCCccccChhhHHHHHHHHHHHHHHHHCCCCEEEECCcchHHHHHHHHHHHHHhhCCCeEEEEEeCcc
Confidence 5788888888777 33333344444444555789999999986 455556678877886 66677732
Q ss_pred c--cCCChhHHHHHHHHhh
Q 025622 206 L--KKQPPESQELLAKVKT 222 (250)
Q Consensus 206 L--~kQp~Es~elLe~V~~ 222 (250)
= ++=.++.|+.+.++++
T Consensus 82 ~q~~~W~e~~q~~y~~i~~ 100 (182)
T PRK13660 82 EHGENWNEANQEKLANILK 100 (182)
T ss_pred chhhcCCHHHHHHHHHHHH
Confidence 1 2236778888887755
No 9
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=80.24 E-value=12 Score=31.93 Aligned_cols=80 Identities=23% Similarity=0.304 Sum_probs=44.7
Q ss_pred ceEEEeccccc------------chhHHHHHHHHHHHHHHhCCceeecCCCCchH--HHHHhhhhhcCCCc-eeEeeccc
Q 025622 141 RAIGFFGTRNM------------GFMHQELIEILSYALVITKNHIYTSGASGTNA--AVIRGALRAERPDL-LTVILPQS 205 (250)
Q Consensus 141 rrIa~lGsRhv------------~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNa--AvIRGalrae~P~l-LTViLPQS 205 (250)
|+|+|-|-|-. .++-..|-+.+..++-.+=-++||+||-|+-. |-+--.|+.+-|++ |.+++|=
T Consensus 2 ~~~~~TGyR~~eL~~f~~~~~~~~~ik~~L~~~i~~lie~G~~~fi~GgalG~D~waae~vl~LK~~yp~ikL~~v~Pf- 80 (177)
T PF06908_consen 2 KRCCFTGYRPYELGIFNEKDPKIQVIKKALKKQIIELIEEGVRWFITGGALGVDLWAAEVVLELKKEYPEIKLALVLPF- 80 (177)
T ss_dssp -EEEEEE--GGGGT--SS--HHHHHHHHHHHHHHHHHHTTT--EEEE---TTHHHHHHHHHHTTTTT-TT-EEEEEESS-
T ss_pred eEEEEEecChhhcCCCCCCchhHHHHHHHHHHHHHHHHHCCCCEEEECCcccHHHHHHHHHHHHHhhhhheEEEEEEcc-
Confidence 56777776644 22444555555555556667999999999864 44555677878865 6677773
Q ss_pred ccCC----ChhHHHHHHHHhh
Q 025622 206 LKKQ----PPESQELLAKVKT 222 (250)
Q Consensus 206 L~kQ----p~Es~elLe~V~~ 222 (250)
+.| +++.|+.+.+++.
T Consensus 81 -~~q~~~W~~~~q~~y~~il~ 100 (177)
T PF06908_consen 81 -ENQGNNWNEANQERYQSILE 100 (177)
T ss_dssp -B-TTTTS-HHHHHHHHHHHH
T ss_pred -cchhhcCCHHHHHHHHHHHH
Confidence 333 5678888888764
No 10
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=78.75 E-value=7.9 Score=33.53 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHH
Q 025622 128 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVI 168 (250)
Q Consensus 128 ~lqELaaIQq~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl 168 (250)
+.+.+..+.+.|.+.|.|.|.- |++|..++|++.++-..
T Consensus 45 i~~~i~~~~~~gi~~I~~tGGE--Pll~~~l~~iv~~l~~~ 83 (302)
T TIGR02668 45 IERIVRVASEFGVRKVKITGGE--PLLRKDLIEIIRRIKDY 83 (302)
T ss_pred HHHHHHHHHHcCCCEEEEECcc--cccccCHHHHHHHHHhC
Confidence 4444445567899999999954 99999999999987554
No 11
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=77.01 E-value=15 Score=32.87 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=29.0
Q ss_pred HHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhC
Q 025622 134 AIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITK 170 (250)
Q Consensus 134 aIQq~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~g 170 (250)
.+-+.|.+.|-|.|.- |++|.+++|++.|+-...+
T Consensus 56 ~~~~~Gv~~I~~tGGE--Pllr~dl~~li~~i~~~~~ 90 (329)
T PRK13361 56 AFTELGVRKIRLTGGE--PLVRRGCDQLVARLGKLPG 90 (329)
T ss_pred HHHHCCCCEEEEECcC--CCccccHHHHHHHHHhCCC
Confidence 3445799999999965 9999999999999876555
No 12
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=72.71 E-value=30 Score=26.09 Aligned_cols=58 Identities=12% Similarity=0.055 Sum_probs=38.5
Q ss_pred HHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhCCceeecCC--CC--chHHHHHhhhhh
Q 025622 134 AIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGA--SG--TNAAVIRGALRA 192 (250)
Q Consensus 134 aIQq~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA--~G--tNaAvIRGalra 192 (250)
.+.++|.++|+++++... -..+..++.+..++...|-.+...-. .+ .....++..++.
T Consensus 118 ~l~~~~~~~i~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 179 (269)
T cd01391 118 YLAEKGWKRVALIYGDDG-AYGRERLEGFKAALKKAGIEVVAIEYGDLDTEKGFQALLQLLKA 179 (269)
T ss_pred HHHHhCCceEEEEecCCc-chhhHHHHHHHHHHHhcCcEEEeccccCCCccccHHHHHHHHhc
Confidence 457778999999998776 45677888888888877644443222 22 133555666665
No 13
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=70.78 E-value=5.6 Score=35.53 Aligned_cols=46 Identities=17% Similarity=0.066 Sum_probs=31.0
Q ss_pred EecccccchhHHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhh
Q 025622 145 FFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRA 192 (250)
Q Consensus 145 ~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalra 192 (250)
-+|..+.+ .|+++-|.++..+-. .+-++|+|++..|.++|++.++.
T Consensus 56 ~~~~~~~~-~~~~l~~~lA~~~g~-~~~~~~~g~t~a~~~al~~l~~~ 101 (387)
T PRK09331 56 RLDQIKKP-PIADFHEDLAEFLGM-DEARVTHGAREGKFAVMHSLCKK 101 (387)
T ss_pred ccccccCh-HHHHHHHHHHHHhCC-CcEEEeCCHHHHHHHHHHHhcCC
Confidence 44545555 377777777776543 46778888888788888877543
No 14
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=69.94 E-value=8.9 Score=27.95 Aligned_cols=52 Identities=25% Similarity=0.285 Sum_probs=34.6
Q ss_pred HHhhhhhcCCCceeEeecccccCCChhHHHHHHHHhh-hhcCCCCCCCChHHHhhhh
Q 025622 186 IRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKT-VIEKPHNDHLPLIEASRYT 241 (250)
Q Consensus 186 IRGalrae~P~lLTViLPQSL~kQp~Es~elLe~V~~-lvE~penD~LpL~eAS~lC 241 (250)
++-.+..+++|++.|.-|-+. ..+-..+.|+.=+| ++|||--. .+.|+.+|.
T Consensus 54 ~~~ll~~~~~D~V~I~tp~~~--h~~~~~~~l~~g~~v~~EKP~~~--~~~~~~~l~ 106 (120)
T PF01408_consen 54 LEELLADEDVDAVIIATPPSS--HAEIAKKALEAGKHVLVEKPLAL--TLEEAEELV 106 (120)
T ss_dssp HHHHHHHTTESEEEEESSGGG--HHHHHHHHHHTTSEEEEESSSSS--SHHHHHHHH
T ss_pred HHHHHHhhcCCEEEEecCCcc--hHHHHHHHHHcCCEEEEEcCCcC--CHHHHHHHH
Confidence 667788889999999998844 33444445544444 68999754 556665553
No 15
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=69.61 E-value=27 Score=30.97 Aligned_cols=72 Identities=19% Similarity=0.253 Sum_probs=44.7
Q ss_pred HhcCCceEEEecccccchhHHHHHHHHHHHHHHhCC-ceeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhHH
Q 025622 136 QQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKN-HIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQ 214 (250)
Q Consensus 136 Qq~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn-~i~TSGA~GtNaAvIRGalrae~P~lLTViLPQSL~kQp~Es~ 214 (250)
.+.|.+.|.|.| -=|++|.+++||+.|+--..=. .|.|.| +..+-..++-...+ ..+.+.| ||+--.+|..
T Consensus 50 ~~~g~~~v~~~G--GEPll~~~~~~ii~~~~~~g~~~~l~TNG-~ll~~e~~~~L~~~-g~~~v~i----Sldg~~~e~~ 121 (358)
T TIGR02109 50 AELGVLQLHFSG--GEPLARPDLVELVAHARRLGLYTNLITSG-VGLTEARLDALADA-GLDHVQL----SFQGVDEALA 121 (358)
T ss_pred HhcCCcEEEEeC--ccccccccHHHHHHHHHHcCCeEEEEeCC-ccCCHHHHHHHHhC-CCCEEEE----eCcCCCHHHH
Confidence 446889999998 4688999999999998654212 355554 44454455433332 5555665 5555544443
Q ss_pred H
Q 025622 215 E 215 (250)
Q Consensus 215 e 215 (250)
+
T Consensus 122 d 122 (358)
T TIGR02109 122 D 122 (358)
T ss_pred H
Confidence 3
No 16
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=66.77 E-value=23 Score=31.18 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHH
Q 025622 128 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVI 168 (250)
Q Consensus 128 ~lqELaaIQq~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl 168 (250)
+...+..+.+.|.+.|.|.|.- |++|.+++|++.++-..
T Consensus 54 i~~~i~~~~~~gi~~I~~tGGE--Pll~~~l~~li~~i~~~ 92 (331)
T PRK00164 54 IERLVRAFVALGVRKVRLTGGE--PLLRKDLEDIIAALAAL 92 (331)
T ss_pred HHHHHHHHHHCCCCEEEEECCC--CcCccCHHHHHHHHHhc
Confidence 5555555667799999999954 99999999999997554
No 17
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=66.55 E-value=10 Score=28.49 Aligned_cols=58 Identities=19% Similarity=0.281 Sum_probs=39.9
Q ss_pred hhHHHHH-HHHHhcCCceEEEecccccchh---HHHHHHHHHHHHHHhC-CceeecCCCCchHHH
Q 025622 126 VDYLQEL-LAIQQQGPRAIGFFGTRNMGFM---HQELIEILSYALVITK-NHIYTSGASGTNAAV 185 (250)
Q Consensus 126 vD~lqEL-aaIQq~g~rrIa~lGsRhv~~~---hq~LIEllsyAlvl~g-n~i~TSGA~GtNaAv 185 (250)
.+.+.|+ ..+++.+.+.|.|.|.- |++ ...+.|++.++--... ..++.+.++..+...
T Consensus 38 ~~~~~~ii~~~~~~~~~~i~l~GGE--Pll~~~~~~l~~i~~~~k~~~~~~~~~~tng~~~~~~~ 100 (139)
T PF13353_consen 38 EEIIEEIIEELKNYGIKGIVLTGGE--PLLHENYDELLEILKYIKEKFPKKIIILTNGYTLDELL 100 (139)
T ss_dssp HHHHHHHCHHHCCCCCCEEEEECST--GGGHHSHHHHHHHHHHHHHTT-SEEEEEETT--HHHHH
T ss_pred chhhhhhhhHHhcCCceEEEEcCCC--eeeeccHhHHHHHHHHHHHhCCCCeEEEECCCchhHHH
Confidence 3555554 45557899999999955 999 7899999999988888 345555555555544
No 18
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=63.76 E-value=12 Score=35.92 Aligned_cols=75 Identities=23% Similarity=0.377 Sum_probs=46.2
Q ss_pred ccccccccCCccccCCCCccchhhhcccceeeecccccCCChhHHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHH
Q 025622 85 ENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSY 164 (250)
Q Consensus 85 ~~~~~~f~~d~~~~~~iptq~~~vv~g~~~v~~~~~~~~p~vD~lqELaaIQq~g~rrIa~lGsRhv~~~hq~LIEllsy 164 (250)
=|..|+||.+.|. +|.| .| .++++ -|++.=....|+.|.|+|-|.|.--.|.+|+ |+|.|.|
T Consensus 128 CnfrCVfCQNwdI-Sq~~---------~g----~~v~~---e~La~i~~~~~~~GakNvN~Vgg~Ptp~lp~-Ile~l~~ 189 (335)
T COG1313 128 CNFRCVFCQNWDI-SQFG---------IG----KEVTP---EDLAEIILELRRHGAKNVNFVGGDPTPHLPF-ILEALRY 189 (335)
T ss_pred cceEEEEecCccc-cccC---------CC----eEecH---HHHHHHHHHHHHhcCcceeecCCCCCCchHH-HHHHHHH
Confidence 4667888888772 2222 11 22222 2344444555669999999999666666664 7899999
Q ss_pred HHHHhCCceeecCC
Q 025622 165 ALVITKNHIYTSGA 178 (250)
Q Consensus 165 Alvl~gn~i~TSGA 178 (250)
|... -=-++-|+.
T Consensus 190 ~~~~-iPvvwNSnm 202 (335)
T COG1313 190 ASEN-IPVVWNSNM 202 (335)
T ss_pred HhcC-CCEEEecCC
Confidence 8765 333444443
No 19
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=61.64 E-value=56 Score=29.46 Aligned_cols=72 Identities=22% Similarity=0.360 Sum_probs=44.7
Q ss_pred HhcCCceEEEecccccchhHHHHHHHHHHHHHHhCC-ceeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhHH
Q 025622 136 QQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKN-HIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQ 214 (250)
Q Consensus 136 Qq~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn-~i~TSGA~GtNaAvIRGalrae~P~lLTViLPQSL~kQp~Es~ 214 (250)
.+.|.+.|.|.|. =|++|-+++||+.|+-...=. .|.|.| +..+--.++- |.....+-+.| ||+--.+|..
T Consensus 59 ~~~g~~~v~~~GG--EPll~~~~~~il~~~~~~g~~~~i~TNG-~ll~~~~~~~-L~~~g~~~v~i----Sldg~~~e~~ 130 (378)
T PRK05301 59 RALGALQLHFSGG--EPLLRKDLEELVAHARELGLYTNLITSG-VGLTEARLAA-LKDAGLDHIQL----SFQDSDPELN 130 (378)
T ss_pred HHcCCcEEEEECC--ccCCchhHHHHHHHHHHcCCcEEEECCC-ccCCHHHHHH-HHHcCCCEEEE----EecCCCHHHH
Confidence 4568899999995 489999999999998654212 345554 4455555543 33324444444 5555445543
Q ss_pred H
Q 025622 215 E 215 (250)
Q Consensus 215 e 215 (250)
+
T Consensus 131 d 131 (378)
T PRK05301 131 D 131 (378)
T ss_pred H
Confidence 3
No 20
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=59.97 E-value=34 Score=24.82 Aligned_cols=73 Identities=19% Similarity=0.262 Sum_probs=47.4
Q ss_pred hHHHHHHHH-HhcCCceEEEecccccchhHHHHHHHHHHHHHH---hCCceeecCCCCchHHHHHhhhhhcCCCceeEee
Q 025622 127 DYLQELLAI-QQQGPRAIGFFGTRNMGFMHQELIEILSYALVI---TKNHIYTSGASGTNAAVIRGALRAERPDLLTVIL 202 (250)
Q Consensus 127 D~lqELaaI-Qq~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl---~gn~i~TSGA~GtNaAvIRGalrae~P~lLTViL 202 (250)
++++++..+ ++.|.+.|.+.|. =|++|.+..+++.++... ...-.+++.+.-.+-..++-..+. ..+.+.+=+
T Consensus 32 ~i~~~~~~~~~~~~~~~i~~~~g--ep~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~l~~l~~~-~~~~i~~~l 108 (166)
T PF04055_consen 32 EILEEIKELKQDKGVKEIFFGGG--EPTLHPDFIELLELLRKIKKRGIRISINTNGTLLDEELLDELKKL-GVDRIRISL 108 (166)
T ss_dssp HHHHHHHHHHHHTTHEEEEEESS--TGGGSCHHHHHHHHHHHCTCTTEEEEEEEESTTHCHHHHHHHHHT-TCSEEEEEE
T ss_pred HHHHHHHHHhHhcCCcEEEEeec--CCCcchhHHHHHHHHHHhhccccceeeeccccchhHHHHHHHHhc-CccEEeccc
Confidence 488899998 7888555555443 478899999999999987 333334444444446666655555 344444433
No 21
>KOG2235 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.94 E-value=0.9 Score=46.99 Aligned_cols=151 Identities=24% Similarity=0.274 Sum_probs=95.9
Q ss_pred ccccCCCCCcccccccccccccCCccccCCCCccchhhhcccceeeecccccCCC--hh-HHHHHH-HHHhcCCceEEEe
Q 025622 71 MRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPD--VD-YLQELL-AIQQQGPRAIGFF 146 (250)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~f~~d~~~~~~iptq~~~vv~g~~~v~~~~~~~~p~--vD-~lqELa-aIQq~g~rrIa~l 146 (250)
|++.-..-|+|..-.++....+-|-+ .|-.+++-||.-...|....-..+-. +| +++|+. .+|++|.-.|+=|
T Consensus 63 I~dEl~v~GgRaslvDla~tlnVDl~---hIEk~a~dIv~~d~~v~Lv~geiide~Y~d~iaeEinekLqE~gqvtiaeL 139 (776)
T KOG2235|consen 63 IKDELIVAGGRASLVDLAVTLNVDLD---HIEKTARDIVSTDDEVTLVLGEIIDEEYVDRIAEEINEKLQEQGQVTIAEL 139 (776)
T ss_pred HHHHHHHhCCcchhHHHHHHhCcCHH---HHHHHHHHHhhcCCceEEehhhhhhHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 33333345666666777777777766 67777877776654443332222222 67 888986 5899999888754
Q ss_pred -cccccc--hhHHHHHHHHHHHH---HHhCCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhHH-----H
Q 025622 147 -GTRNMG--FMHQELIEILSYAL---VITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQ-----E 215 (250)
Q Consensus 147 -GsRhv~--~~hq~LIEllsyAl---vl~gn~i~TSGA~GtNaAvIRGalrae~P~lLTViLPQSL~kQp~Es~-----e 215 (250)
|.-++| |+.+-|+|=+--.+ .+.|..|||+-=-----|+||||++| +|+.-|=|---++--.| -
T Consensus 140 akq~dl~sellqs~l~ek~lg~iikgr~dggviyT~Ayv~r~ka~iRga~~a-----Itrptnvs~i~~k~gvqek~~~s 214 (776)
T KOG2235|consen 140 AKQWDLPSELLQSLLIEKLLGSIIKGRVDGGVIYTSAYVNRRKAVIRGALIA-----ITRPTNVSTIQKKVGVQEKRFYS 214 (776)
T ss_pred HHhcCCcHHHHHHHHHHHhhccceeeeecCCEEeeHHHHHHHHHHHHHHHHH-----hhcCCcHHHHHHHhcccHHHHHH
Confidence 555665 66666777522222 35678899986655566999999999 66665544333333333 3
Q ss_pred HHHHHhhhhcCCCC
Q 025622 216 LLAKVKTVIEKPHN 229 (250)
Q Consensus 216 lLe~V~~lvE~pen 229 (250)
.+|.+.+.-|+|+-
T Consensus 215 ~feei~n~g~~~gt 228 (776)
T KOG2235|consen 215 AFEEIQNLGEIPGT 228 (776)
T ss_pred HHHHHHhcccCccc
Confidence 56777888787764
No 22
>PLN03032 serine decarboxylase; Provisional
Probab=57.38 E-value=23 Score=33.13 Aligned_cols=65 Identities=14% Similarity=0.051 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHhcCCceEEEecccc-----cchhHHHHHHHHHHHHHHhCC-c--eeecCCCCchHHHHHhhhh
Q 025622 126 VDYLQELLAIQQQGPRAIGFFGTRN-----MGFMHQELIEILSYALVITKN-H--IYTSGASGTNAAVIRGALR 191 (250)
Q Consensus 126 vD~lqELaaIQq~g~rrIa~lGsRh-----v~~~hq~LIEllsyAlvl~gn-~--i~TSGA~GtNaAvIRGalr 191 (250)
.||. ++.++.+-....+|--++-| .--+=.++++.++.-+-.... . ++|||||-.|--++++|-.
T Consensus 35 ~~~~-~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~ 107 (374)
T PLN03032 35 FDYG-ELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGRE 107 (374)
T ss_pred cChH-HHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHH
Confidence 5654 47777776666677666655 223445566666655544323 3 8999999999888887743
No 23
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=53.67 E-value=46 Score=27.11 Aligned_cols=70 Identities=14% Similarity=0.294 Sum_probs=41.5
Q ss_pred HHHHHHHHH---hcCCceEEEecccc---cchhHHHHHHHHHHHHHHhCCceeecCCCCchHHHH-----HhhhhhcCCC
Q 025622 128 YLQELLAIQ---QQGPRAIGFFGTRN---MGFMHQELIEILSYALVITKNHIYTSGASGTNAAVI-----RGALRAERPD 196 (250)
Q Consensus 128 ~lqELaaIQ---q~g~rrIa~lGsRh---v~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvI-----RGalrae~P~ 196 (250)
+..|+.++. ++++.+|.|||.-- ++..- ...+.-.+.+-.++--|-+|.+..-+ ++++.+.+|+
T Consensus 17 ~~~~~~~~~~~~~~~~~~iv~lGDSit~g~~~~~-----~~~~~~~~~~~~v~N~Gi~G~tt~~~l~r~~~~~l~~~~pd 91 (214)
T cd01820 17 WMSRHERFVAEAKQKEPDVVFIGDSITQNWEFTG-----LEVWRELYAPLHALNFGIGGDRTQNVLWRLENGELDGVNPK 91 (214)
T ss_pred HHHHHHHHHHHhhcCCCCEEEECchHhhhhcccc-----hHHHHHHcCcCCeEeeeeccccHhHHHHHHhcCCccCCCCC
Confidence 677777776 46788999999642 22211 11122223466777777777665433 2344445788
Q ss_pred ceeEee
Q 025622 197 LLTVIL 202 (250)
Q Consensus 197 lLTViL 202 (250)
++.|.+
T Consensus 92 ~VvI~~ 97 (214)
T cd01820 92 VVVLLI 97 (214)
T ss_pred EEEEEe
Confidence 887765
No 24
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=51.47 E-value=41 Score=31.26 Aligned_cols=41 Identities=10% Similarity=0.045 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhC
Q 025622 128 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITK 170 (250)
Q Consensus 128 ~lqELaaIQq~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~g 170 (250)
+.+.+..+...|.++|-|-|. =|++|..|.|++.|+-.+.|
T Consensus 95 i~~~i~~~~~~Gv~~I~~tGG--EPllr~dl~eli~~l~~~~g 135 (373)
T PLN02951 95 IVRLAGLFVAAGVDKIRLTGG--EPTLRKDIEDICLQLSSLKG 135 (373)
T ss_pred HHHHHHHHHHCCCCEEEEECC--CCcchhhHHHHHHHHHhcCC
Confidence 445455566789999999995 49999999999999877645
No 25
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=50.89 E-value=31 Score=25.77 Aligned_cols=33 Identities=12% Similarity=0.195 Sum_probs=28.6
Q ss_pred hHHHHHHHHHhcC-CceEEEecccccchhHHHHH
Q 025622 127 DYLQELLAIQQQG-PRAIGFFGTRNMGFMHQELI 159 (250)
Q Consensus 127 D~lqELaaIQq~g-~rrIa~lGsRhv~~~hq~LI 159 (250)
|+.+||+..+++| +..+-+|++-.||..+...-
T Consensus 1 ~~~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~ 34 (125)
T cd02951 1 DLYEDLAEAAADGKKPLLLLFSQPGCPYCDKLKR 34 (125)
T ss_pred ChHHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHH
Confidence 6889999999999 88889999999998876543
No 26
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=50.81 E-value=38 Score=34.31 Aligned_cols=37 Identities=32% Similarity=0.618 Sum_probs=27.8
Q ss_pred ccccCC---Chh-HHHHHHHHHh-cCCceEEEecccccchhH
Q 025622 119 EFKPVP---DVD-YLQELLAIQQ-QGPRAIGFFGTRNMGFMH 155 (250)
Q Consensus 119 ~~~~~p---~vD-~lqELaaIQq-~g~rrIa~lGsRhv~~~h 155 (250)
+++++. .+| ++++|.+|++ .|+..|+++|+.+.+...
T Consensus 115 ~~~~iSWDeAl~~iA~kl~~i~~~~G~~si~~~gsg~~~~~~ 156 (830)
T TIGR01706 115 EFTPVSWDQAFDEMEEQFKRALKEKGPTAIGMFGSGQWTIWE 156 (830)
T ss_pred CeeEcCHHHHHHHHHHHHHHHHHHhCCceEEEEecCCcchHH
Confidence 566666 266 6788888865 799999999998877543
No 27
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=49.75 E-value=1.2e+02 Score=27.26 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=30.8
Q ss_pred HHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhCCceee
Q 025622 134 AIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYT 175 (250)
Q Consensus 134 aIQq~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~T 175 (250)
.|.+.|.+.|.|.|. =|++|.++.||+.|+.....+..++
T Consensus 67 ~i~e~g~~~V~i~GG--EPLL~pdl~eiv~~~~~~g~~v~l~ 106 (318)
T TIGR03470 67 AVDECGAPVVSIPGG--EPLLHPEIDEIVRGLVARKKFVYLC 106 (318)
T ss_pred HHHHcCCCEEEEeCc--cccccccHHHHHHHHHHcCCeEEEe
Confidence 344568899999994 7999999999999997764443333
No 28
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=49.51 E-value=22 Score=30.99 Aligned_cols=22 Identities=0% Similarity=0.046 Sum_probs=12.2
Q ss_pred hcCCCC---CCCChHHHhhhhhhhh
Q 025622 224 IEKPHN---DHLPLIEASRYTISFA 245 (250)
Q Consensus 224 vE~pen---D~LpL~eAS~lCns~~ 245 (250)
|..|.| .-.++.+...+|....
T Consensus 145 l~~p~n~tG~~~~~~~i~~~~~~~~ 169 (361)
T cd06452 145 LTHVDGNYGNLHDAKKIAKVCHEYG 169 (361)
T ss_pred EECCCCCCeeeccHHHHHHHHHHcC
Confidence 455544 3345666667776543
No 29
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=46.21 E-value=72 Score=23.65 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=36.5
Q ss_pred ceEEEecccccchhHHHHHHHHHHHHHHhCCceeecCCC--CchHHHHHhhhh
Q 025622 141 RAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGAS--GTNAAVIRGALR 191 (250)
Q Consensus 141 rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~--GtNaAvIRGalr 191 (250)
.||.|-|+|+.- =|+.|..-|...+...++-++-+|++ |....+-+=|-+
T Consensus 4 ~rVli~GgR~~~-D~~~i~~~Ld~~~~~~~~~~lvhGga~~GaD~iA~~wA~~ 55 (71)
T PF10686_consen 4 MRVLITGGRDWT-DHELIWAALDKVHARHPDMVLVHGGAPKGADRIAARWARE 55 (71)
T ss_pred CEEEEEECCccc-cHHHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 589999999976 45556677777778777776666655 888877666543
No 30
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=46.00 E-value=31 Score=24.90 Aligned_cols=58 Identities=19% Similarity=0.342 Sum_probs=33.6
Q ss_pred cccCCC-hh-HHHHHHHHHhcCCceEEEec-ccccchhHHHHHHHHHHHHHHhCCceeecCC
Q 025622 120 FKPVPD-VD-YLQELLAIQQQGPRAIGFFG-TRNMGFMHQELIEILSYALVITKNHIYTSGA 178 (250)
Q Consensus 120 ~~~~p~-vD-~lqELaaIQq~g~rrIa~lG-sRhv~~~hq~LIEllsyAlvl~gn~i~TSGA 178 (250)
|.--|+ +. +++.|..+- .+.|.|++|| .++.+---.+..+.+...+......+++.|.
T Consensus 20 ~ahNp~s~~a~l~~l~~~~-~~~~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d~vi~~~~ 80 (91)
T PF02875_consen 20 YAHNPDSIRALLEALKELY-PKGRIIAVFGAMGDLGSKDKDFHEEIGELAAQLADVVILTGD 80 (91)
T ss_dssp T--SHHHHHHHHHHHHHHC-TTSEEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSSEEEEETS
T ss_pred CCCCHHHHHHHHHHHHHhc-cCCcEEEEEccccccccccHHHHHHHHHHHHhcCCEEEEcCC
Confidence 776665 33 444444442 2789999999 5664444455555666666665666777654
No 31
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=45.95 E-value=15 Score=35.51 Aligned_cols=25 Identities=40% Similarity=0.526 Sum_probs=21.8
Q ss_pred hCCceeecCCCCchHHHHHhhhhhc
Q 025622 169 TKNHIYTSGASGTNAAVIRGALRAE 193 (250)
Q Consensus 169 ~gn~i~TSGA~GtNaAvIRGalrae 193 (250)
..+-++|||||=-|-.+|+|++.+.
T Consensus 61 ~~eIiFTSG~TEsnNlaI~g~~~a~ 85 (386)
T COG1104 61 PEEIIFTSGATESNNLAIKGAALAY 85 (386)
T ss_pred CCeEEEecCCcHHHHHHHHhhHHhh
Confidence 3578899999999999999988774
No 32
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=45.77 E-value=39 Score=31.09 Aligned_cols=42 Identities=17% Similarity=0.127 Sum_probs=35.1
Q ss_pred hh-HHHHHHHHHhcCCceEEEecccccchhH-HHHHHHHHHHHH
Q 025622 126 VD-YLQELLAIQQQGPRAIGFFGTRNMGFMH-QELIEILSYALV 167 (250)
Q Consensus 126 vD-~lqELaaIQq~g~rrIa~lGsRhv~~~h-q~LIEllsyAlv 167 (250)
.| +.+++.++.+.|.++|.++|.++-+..+ ..|+|++.+.-.
T Consensus 105 ~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~eii~~Ik~ 148 (366)
T TIGR02351 105 EEEIEREIEAIKKSGFKEILLVTGESEKAAGVEYIAEAIKLARE 148 (366)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHH
Confidence 45 8888889999999999999988888775 568998887754
No 33
>PRK10200 putative racemase; Provisional
Probab=45.32 E-value=21 Score=30.94 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=18.7
Q ss_pred cCCChhHHHHHH-HHHhcCCceEEEecccc
Q 025622 122 PVPDVDYLQELL-AIQQQGPRAIGFFGTRN 150 (250)
Q Consensus 122 ~~p~vD~lqELa-aIQq~g~rrIa~lGsRh 150 (250)
++|=++...+.+ +++++|.|+||+|||+-
T Consensus 98 ~iPii~ii~~~~~~~~~~~~~~VglLaT~~ 127 (230)
T PRK10200 98 SLPFLHIADATGRAITGAGMTRVALLGTRY 127 (230)
T ss_pred CCCEeehHHHHHHHHHHcCCCeEEEeccHH
Confidence 455555444433 35667889999998863
No 34
>PHA00619 CRISPR-associated Cas4-like protein
Probab=44.86 E-value=26 Score=29.96 Aligned_cols=77 Identities=13% Similarity=0.159 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhHHHHHHHHhhhhcCCCCCCCC
Q 025622 154 MHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLP 233 (250)
Q Consensus 154 ~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~P~lLTViLPQSL~kQp~Es~elLe~V~~lvE~penD~Lp 233 (250)
...|...+..|++.+.. .+|.+..-.++--+.-+. .+.-..+..+.+++|..+| +++.+|
T Consensus 119 ~~~~~~QL~~Yl~lL~~---------------~~G~l~~~~~~rk~~eV~--~~~~~~~l~~~i~~I~~ii---~~~~~P 178 (201)
T PHA00619 119 LNNYLRQLNYYIEMANA---------------MAGYLIIVHADGRVEEIK--RDWSETDLENRANAFGISV---EENILP 178 (201)
T ss_pred hHHHHHHHHHHHHHHHh---------------cCcEEEEEcCCCceEEee--ccccHHHHHHHHHHHHHHH---hcCcCC
Confidence 45677888999998864 455552213332222222 2233356666677777777 455666
Q ss_pred --hHHHhhhhhhhhhcccC
Q 025622 234 --LIEASRYTISFAFFLFC 250 (250)
Q Consensus 234 --L~eAS~lCns~~~~~~~ 250 (250)
-++-...|..-+|+-||
T Consensus 179 ~~~~~~~~~C~~C~y~~~C 197 (201)
T PHA00619 179 PKKSKPDSECIECPFYNVC 197 (201)
T ss_pred CCCCCCcCcCCCCCCcccC
Confidence 55567899999999888
No 35
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=44.58 E-value=72 Score=27.61 Aligned_cols=49 Identities=20% Similarity=0.235 Sum_probs=37.0
Q ss_pred hHHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhCCce--eecCC
Q 025622 127 DYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHI--YTSGA 178 (250)
Q Consensus 127 D~lqELaaIQq~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i--~TSGA 178 (250)
++++++..+...|.+.|.|-|. =|++|..|.|++.++-.. |-++ -|+|.
T Consensus 60 ei~~~i~~~~~~~~~~V~lTGG--EPll~~~l~~li~~l~~~-g~~v~leTNGt 110 (238)
T TIGR03365 60 EVWQELKALGGGTPLHVSLSGG--NPALQKPLGELIDLGKAK-GYRFALETQGS 110 (238)
T ss_pred HHHHHHHHHhCCCCCeEEEeCC--chhhhHhHHHHHHHHHHC-CCCEEEECCCC
Confidence 4777777766667899999995 599999999999998765 4443 45554
No 36
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=43.83 E-value=99 Score=26.17 Aligned_cols=46 Identities=24% Similarity=0.247 Sum_probs=32.7
Q ss_pred CCceEEEecccccchhHHHHHHHHHHHHHHhCCceeec---CCCCchHHHHHhhh
Q 025622 139 GPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTS---GASGTNAAVIRGAL 190 (250)
Q Consensus 139 g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TS---GA~GtNaAvIRGal 190 (250)
-.++|-|+|||. ..+.+|+..+ -.+|.+-++. |++=||.-.++.-+
T Consensus 55 ~~g~iLfV~t~~---~~~~~v~~~a---~~~~~~~i~~rw~~G~LTN~~~~~~~~ 103 (193)
T cd01425 55 KGGKILFVGTKP---QAQRAVKKFA---ERTGSFYVNGRWLGGTLTNWKTIRKSI 103 (193)
T ss_pred CCCEEEEEECCH---HHHHHHHHHH---HHcCCeeecCeecCCcCCCHHHHHHHH
Confidence 368899999998 3456665444 3446665554 89999999987753
No 37
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=43.68 E-value=78 Score=24.87 Aligned_cols=64 Identities=14% Similarity=0.247 Sum_probs=34.4
Q ss_pred CceEEEeccccc-ch---hHHHHHHHHHHHHHH--hCCceeecCCCCchHHHHHh----hh----hhcCCCceeEeec
Q 025622 140 PRAIGFFGTRNM-GF---MHQELIEILSYALVI--TKNHIYTSGASGTNAAVIRG----AL----RAERPDLLTVILP 203 (250)
Q Consensus 140 ~rrIa~lGsRhv-~~---~hq~LIEllsyAlvl--~gn~i~TSGA~GtNaAvIRG----al----rae~P~lLTViLP 203 (250)
|++|.+||.--. ++ .+......+.+.+.. .+.+++--|-.|.++.-+.- .. ..++|++++|.+-
T Consensus 1 ~~~i~~lGDSit~G~~~~~~~~~~~~~~~~~~~~~~~~~~~N~gi~G~t~~~~~~r~~~~~~~~~~~~~pd~V~i~~G 78 (193)
T cd01835 1 PKRLIVVGDSLVYGWGDPEGGGWVGRLRARWMNLGDDPVLYNLGVRGDGSEDVAARWRAEWSRRGELNVPNRLVLSVG 78 (193)
T ss_pred CcEEEEEcCccccCCCCCCCCChHHHHHHHhhccCCCeeEEeecCCCCCHHHHHHHHHHHHHhhcccCCCCEEEEEec
Confidence 678888886221 11 234455555554443 23455556666666532211 11 1258999998763
No 38
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=43.43 E-value=23 Score=25.14 Aligned_cols=26 Identities=31% Similarity=0.586 Sum_probs=20.2
Q ss_pred eEEEecccccchhHHHHHHHHHHHHHHhC---Ccee
Q 025622 142 AIGFFGTRNMGFMHQELIEILSYALVITK---NHIY 174 (250)
Q Consensus 142 rIa~lGsRhv~~~hq~LIEllsyAlvl~g---n~i~ 174 (250)
+|||+|+-||+ +.|...|+..| +.|+
T Consensus 1 kI~iIG~G~mg-------~al~~~l~~~g~~~~~v~ 29 (96)
T PF03807_consen 1 KIGIIGAGNMG-------SALARGLLASGIKPHEVI 29 (96)
T ss_dssp EEEEESTSHHH-------HHHHHHHHHTTS-GGEEE
T ss_pred CEEEECCCHHH-------HHHHHHHHHCCCCceeEE
Confidence 68999999876 45667777777 7776
No 39
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=42.78 E-value=15 Score=27.69 Aligned_cols=16 Identities=13% Similarity=0.482 Sum_probs=13.5
Q ss_pred HhCCceeecCCCCchH
Q 025622 168 ITKNHIYTSGASGTNA 183 (250)
Q Consensus 168 l~gn~i~TSGA~GtNa 183 (250)
..|+.||+||-.|.+.
T Consensus 8 ~~g~~v~iSGq~~~~~ 23 (105)
T cd06150 8 VHNGTVYLAGQVADDT 23 (105)
T ss_pred EECCEEEEeCcCCcCC
Confidence 4689999999998864
No 40
>PF01042 Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: IPR006175 This domain is found in endoribonuclease, that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA []. Previously it was thought to inhibit protein synthesis initiation []. This endoribonuclease may also be involved in the regulation of purine biosynthesis []. ; PDB: 3GTZ_B 3V4D_E 1J7H_A 3R0P_D 2IG8_A 1QD9_B 3L7Q_E 3VCZ_A 3QUW_A 2EWC_K ....
Probab=42.17 E-value=9.5 Score=29.20 Aligned_cols=43 Identities=14% Similarity=0.354 Sum_probs=28.8
Q ss_pred HhCCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhHHHHHHHHhhh
Q 025622 168 ITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTV 223 (250)
Q Consensus 168 l~gn~i~TSGA~GtNaAvIRGalrae~P~lLTViLPQSL~kQp~Es~elLe~V~~l 223 (250)
..|+.||+||-.|.+. +--++. |.+++.|-...-+.|++++.-
T Consensus 16 ~~g~~v~isGq~~~d~------------~~~~~~-~~~~~~Q~~~~l~ni~~~L~~ 58 (121)
T PF01042_consen 16 RAGDTVFISGQVGIDP------------ATGQVV-PGDIEEQTRQALDNIERILAA 58 (121)
T ss_dssp EETTEEEEEEEESBCT------------TTSSBS-SSSHHHHHHHHHHHHHHHHHH
T ss_pred EECCEEEEeeeCCcCC------------CCCcCC-CCCHHHHHHHHHHhhhhhhhc
Confidence 3799999999988754 333344 777777766665555555543
No 41
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=41.92 E-value=36 Score=30.73 Aligned_cols=40 Identities=13% Similarity=-0.003 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHHH-hCCceeecCCCCchHHHHHhhhhh
Q 025622 153 FMHQELIEILSYALVI-TKNHIYTSGASGTNAAVIRGALRA 192 (250)
Q Consensus 153 ~~hq~LIEllsyAlvl-~gn~i~TSGA~GtNaAvIRGalra 192 (250)
-.|++|-|.++.-+-. ..+-++|+|+...|.+++...+..
T Consensus 54 ~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~~ 94 (346)
T TIGR03576 54 IFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALEPP 94 (346)
T ss_pred HHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCCC
Confidence 6788888888777644 367888999988888888877654
No 42
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=41.70 E-value=2.3e+02 Score=24.36 Aligned_cols=95 Identities=22% Similarity=0.272 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCCceEEEeccc--ccchhHHHHHHHHHHHHHHhCCc---eeecCCCCchHHHHHhhhhhc--CCCceeE
Q 025622 128 YLQELLAIQQQGPRAIGFFGTR--NMGFMHQELIEILSYALVITKNH---IYTSGASGTNAAVIRGALRAE--RPDLLTV 200 (250)
Q Consensus 128 ~lqELaaIQq~g~rrIa~lGsR--hv~~~hq~LIEllsyAlvl~gn~---i~TSGA~GtNaAvIRGalrae--~P~lLTV 200 (250)
+.+-+.-+-++|-+-|.++||- -..+.-.+-.+++..+....+.+ |+.-|+..|.. +|+=|-.|+ ..+-+-|
T Consensus 20 ~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~-~i~~a~~a~~~Gad~v~v 98 (281)
T cd00408 20 LRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTRE-AIELARHAEEAGADGVLV 98 (281)
T ss_pred HHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHH-HHHHHHHHHHcCCCEEEE
Confidence 4444555566899999999983 34445566666666555554443 34444444543 444333333 4555555
Q ss_pred eecccccCCChhHHHHHHHHhhhhcC
Q 025622 201 ILPQSLKKQPPESQELLAKVKTVIEK 226 (250)
Q Consensus 201 iLPQSL~kQp~Es~elLe~V~~lvE~ 226 (250)
+|...-+ +..+++++-...+.|.
T Consensus 99 -~pP~y~~--~~~~~~~~~~~~ia~~ 121 (281)
T cd00408 99 -VPPYYNK--PSQEGIVAHFKAVADA 121 (281)
T ss_pred -CCCcCCC--CCHHHHHHHHHHHHhc
Confidence 4445544 2336666666666664
No 43
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=41.60 E-value=1.6e+02 Score=22.69 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=23.3
Q ss_pred HHhcCCceEEEecccccchhHHHHHHHHHHHHHHhC
Q 025622 135 IQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITK 170 (250)
Q Consensus 135 IQq~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~g 170 (250)
+.+.|.|+|++++..+-...+...++-+..++...|
T Consensus 113 l~~~g~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~ 148 (264)
T cd01537 113 LAEKGHRRIALLAGPLGSSTARERVAGFKDALKEAG 148 (264)
T ss_pred HHHhcCCcEEEEECCCCCCcHHHHHHHHHHHHHHcC
Confidence 446689999999776554455555665655555443
No 44
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=41.57 E-value=38 Score=28.57 Aligned_cols=17 Identities=6% Similarity=-0.078 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhCCceee
Q 025622 159 IEILSYALVITKNHIYT 175 (250)
Q Consensus 159 IEllsyAlvl~gn~i~T 175 (250)
+.++-+++...|..|++
T Consensus 60 ~~~~~~~l~~~gd~v~~ 76 (338)
T cd06502 60 NQLALAAHTQPGGSVIC 76 (338)
T ss_pred HHHHHHHhcCCCCeEEE
Confidence 33444444444444444
No 45
>COG3976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.54 E-value=15 Score=31.58 Aligned_cols=46 Identities=24% Similarity=0.452 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhHHHHHHHHhhhhcCCCC
Q 025622 155 HQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHN 229 (250)
Q Consensus 155 hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~P~lLTViLPQSL~kQp~Es~elLe~V~~lvE~pen 229 (250)
..+-.|++.|+.+ |||.||.-+|-||-+- |+..++.|.+.+||++|
T Consensus 90 ~~~a~evvp~eiv---------kAQStdVD~iSgAT~t--------------------S~aiI~svekaLek~~~ 135 (135)
T COG3976 90 NRQALEVVPDEIV---------KAQSTDVDIISGATLT--------------------SRAIIQSVEKALEKASS 135 (135)
T ss_pred hhhhcccccHHHh---------hccccccceeeccccc--------------------hHHHHHHHHHHHhccCC
Confidence 4566788888776 4555555555555443 55555557777777764
No 46
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=41.48 E-value=2.1e+02 Score=24.30 Aligned_cols=78 Identities=17% Similarity=0.200 Sum_probs=47.9
Q ss_pred cccCCChhHHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHHh--CCceeec-CCCC-chHHHHHhhhhhcCC
Q 025622 120 FKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVIT--KNHIYTS-GASG-TNAAVIRGALRAERP 195 (250)
Q Consensus 120 ~~~~p~vD~lqELaaIQq~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~--gn~i~TS-GA~G-tNaAvIRGalrae~P 195 (250)
...++..|+..+|..-=.+...+|.++|++ +..+|-+...|... |..|... |--. .....|.-.+++.+|
T Consensus 28 ~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~------~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~ 101 (177)
T TIGR00696 28 QSRVAGPDLMEELCQRAGKEKLPIFLYGGK------PDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGA 101 (177)
T ss_pred CCccChHHHHHHHHHHHHHcCCeEEEECCC------HHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCC
Confidence 335566788888876544444899999997 34444444444444 3333332 2221 123556677777799
Q ss_pred CceeEeec
Q 025622 196 DLLTVILP 203 (250)
Q Consensus 196 ~lLTViLP 203 (250)
|+|-|=|-
T Consensus 102 dil~VglG 109 (177)
T TIGR00696 102 GIVFVGLG 109 (177)
T ss_pred CEEEEEcC
Confidence 99999874
No 47
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=40.66 E-value=78 Score=27.73 Aligned_cols=52 Identities=19% Similarity=0.082 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhhcCCCceeEeecc
Q 025622 153 FMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQ 204 (250)
Q Consensus 153 ~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~P~lLTViLPQ 204 (250)
+=-.-+..++..|......+|+|+|++.-|.+.-=.+.-+..==..||++|.
T Consensus 39 ~K~R~~~~~l~~a~~~g~~~vv~~g~ssGN~g~alA~~a~~~G~~~~ivvp~ 90 (311)
T TIGR01275 39 NKIRKLEYLLADALSKGADTVITVGAIQSNHARATALAAKKLGLDAVLVLRE 90 (311)
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEcCCchhHHHHHHHHHHHHhCCceEEEecC
Confidence 4445566677777766667899988644444322222222233347888887
No 48
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=40.60 E-value=1.7e+02 Score=23.23 Aligned_cols=66 Identities=17% Similarity=0.109 Sum_probs=33.8
Q ss_pred hcCCceEEEecccc-cchhHHHHHHHHHHHHHHhCC---ceeecC-CCCchHHHHHhhhhhcCCCceeEeeccc
Q 025622 137 QQGPRAIGFFGTRN-MGFMHQELIEILSYALVITKN---HIYTSG-ASGTNAAVIRGALRAERPDLLTVILPQS 205 (250)
Q Consensus 137 q~g~rrIa~lGsRh-v~~~hq~LIEllsyAlvl~gn---~i~TSG-A~GtNaAvIRGalrae~P~lLTViLPQS 205 (250)
++|.|+|+++|... -.-.++.-.+=...++...|- .+++.+ .......+++..+++ .| .++|+-.+
T Consensus 111 ~~g~~~i~~v~~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~--~~~i~~~~ 181 (259)
T cd01542 111 QQGHKNIAYLGVSESDIAVGILRKQGYLDALKEHGICPPNIVETDFSYESAYEAAQELLEP-QP--PDAIVCAT 181 (259)
T ss_pred HcCCCcEEEEcCCcccchhHHHHHHHHHHHHHHcCCChHHeeeccCchhhHHHHHHHHhcC-CC--CCEEEEcC
Confidence 37999999998642 223445544545455544443 123322 223333455555655 33 55555544
No 49
>PF01930 Cas_Cas4: Domain of unknown function DUF83; InterPro: IPR022765 This entry represents an uncharacterised domain found in several proteins, including DNA replication helicase Dna2, clustered regularly interspaced short palindromic repeats (CRISPR)-associated exonuclease Cas4 and putative RecB family exonuclease proteins.
Probab=40.56 E-value=32 Score=27.20 Aligned_cols=79 Identities=22% Similarity=0.414 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhh-cCCCceeEeecccccCCChhHHHHHHHHhhhhcCCCCCCCCh
Q 025622 156 QELIEILSYALVITKNHIYTSGASGTNAAVIRGALRA-ERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPL 234 (250)
Q Consensus 156 q~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalra-e~P~lLTViLPQSL~kQp~Es~elLe~V~~lvE~penD~LpL 234 (250)
.|.+.+.+||+.++ .. |. .|-+|.+.- ++-....|-+-..+ -.+..+.++++..+++.+ .+|-
T Consensus 81 ~~~~Ql~~Y~~lL~-~~-------g~--~v~~G~i~y~~~~~~~~v~~~~~~---~~~v~~~i~~i~~~~~~~---~~P~ 144 (162)
T PF01930_consen 81 EHRMQLAAYALLLE-EF-------GI--PVKRGYIYYIEDRKRVRVEITEEL---RRKVEKLIEEIRKILEGE---SPPP 144 (162)
T ss_pred hhHHHHHHHHHHHH-hc-------Cc--cceeEEEEEecCCeEEEEeCCHHH---HHHHHHHHHHHHHHHhCC---CcCC
Confidence 34889999999998 21 11 112343322 11122233222111 123455566666666654 6677
Q ss_pred HHHhhhhhhhhhcccC
Q 025622 235 IEASRYTISFAFFLFC 250 (250)
Q Consensus 235 ~eAS~lCns~~~~~~~ 250 (250)
.+-++.|..-.|.-+|
T Consensus 145 ~~~~~~C~~C~y~~~C 160 (162)
T PF01930_consen 145 PENSKKCRRCSYREFC 160 (162)
T ss_pred CCCCCCCCCCCCcCcC
Confidence 7778899998888777
No 50
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=40.44 E-value=19 Score=35.40 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=23.6
Q ss_pred HhCCceeecCCCCchHHHHHhhhhhcCC
Q 025622 168 ITKNHIYTSGASGTNAAVIRGALRAERP 195 (250)
Q Consensus 168 l~gn~i~TSGA~GtNaAvIRGalrae~P 195 (250)
-..+-+||||||--|..|++|.-|...-
T Consensus 101 d~~dIiFts~ATEs~Nlvl~~v~~~~~~ 128 (428)
T KOG1549|consen 101 DPSDIVFTSGATESNNLVLKGVARFFGD 128 (428)
T ss_pred CCCcEEEeCCchHHHHHHHHHhhccccc
Confidence 3456899999999999999999996443
No 51
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=40.07 E-value=85 Score=28.07 Aligned_cols=55 Identities=22% Similarity=0.146 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhhcCCCceeEeeccccc
Q 025622 153 FMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLK 207 (250)
Q Consensus 153 ~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~P~lLTViLPQSL~ 207 (250)
|=-..+.-++..|.......|+|+||+.-|.++-=.++-+..-=..+|++|....
T Consensus 47 ~K~R~~~~~l~~a~~~g~~~vvt~g~s~gN~g~alA~~a~~~G~~~~i~vp~~~~ 101 (331)
T PRK03910 47 NKTRKLEFLLADALAQGADTLITAGAIQSNHARQTAAAAAKLGLKCVLLLENPVP 101 (331)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEcCcchhHHHHHHHHHHHHhCCcEEEEEcCCCC
Confidence 3344466677777766668899999755554433333333345567888987655
No 52
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=39.88 E-value=37 Score=26.55 Aligned_cols=50 Identities=18% Similarity=0.150 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhCCceeecCCCCchH
Q 025622 128 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNA 183 (250)
Q Consensus 128 ~lqELaaIQq~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNa 183 (250)
++.++ +++.|-+.+ ...+++==...|-|.+..++.. -+-|+|+|++|...
T Consensus 23 ~l~~~--l~~~G~~v~---~~~~v~Dd~~~i~~~i~~~~~~-~DlvittGG~g~g~ 72 (133)
T cd00758 23 ALEAL--LEDLGCEVI---YAGVVPDDADSIRAALIEASRE-ADLVLTTGGTGVGR 72 (133)
T ss_pred HHHHH--HHHCCCEEE---EeeecCCCHHHHHHHHHHHHhc-CCEEEECCCCCCCC
Confidence 44444 566674422 2234444455667777777654 78999999999754
No 53
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=39.62 E-value=1.8e+02 Score=22.56 Aligned_cols=34 Identities=26% Similarity=0.174 Sum_probs=21.2
Q ss_pred hcCCceEEEecccccchhHHHHHHHHHHHHHHhC
Q 025622 137 QQGPRAIGFFGTRNMGFMHQELIEILSYALVITK 170 (250)
Q Consensus 137 q~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~g 170 (250)
++|.++|++++..+-.-.|+.-.+-+..++...|
T Consensus 113 ~~g~~~i~~i~~~~~~~~~~~r~~g~~~~~~~~~ 146 (264)
T cd06267 113 ELGHRRIAFIGGPPDLSTARERLEGYREALEEAG 146 (264)
T ss_pred HCCCceEEEecCCCccchHHHHHHHHHHHHHHcC
Confidence 4589999999777654445555555545554444
No 54
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=39.56 E-value=62 Score=25.79 Aligned_cols=50 Identities=22% Similarity=0.265 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhCCceeecCCCCchH
Q 025622 128 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNA 183 (250)
Q Consensus 128 ~lqELaaIQq~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNa 183 (250)
+++++ +++.|-+.+ ...+++=-...|.|.+..++. .-.-|+|||++|...
T Consensus 31 ~l~~~--l~~~G~~v~---~~~~v~Dd~~~i~~~l~~~~~-~~DliIttGG~g~g~ 80 (144)
T TIGR00177 31 LLAAL--LEEAGFNVS---RLGIVPDDPEEIREILRKAVD-EADVVLTTGGTGVGP 80 (144)
T ss_pred HHHHH--HHHCCCeEE---EEeecCCCHHHHHHHHHHHHh-CCCEEEECCCCCCCC
Confidence 44444 455564322 223333345677788777654 678999999999853
No 55
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=39.27 E-value=39 Score=29.29 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=28.3
Q ss_pred ceEEEecccccchhH---HHHHHHHHHHHHHhCCc--eeecC
Q 025622 141 RAIGFFGTRNMGFMH---QELIEILSYALVITKNH--IYTSG 177 (250)
Q Consensus 141 rrIa~lGsRhv~~~h---q~LIEllsyAlvl~gn~--i~TSG 177 (250)
|+|||+|||-+|--+ ..++|=|+--|+..|+. +|.+.
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~ 43 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRS 43 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEcc
Confidence 789999999888643 56777788788888884 55454
No 56
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=39.20 E-value=65 Score=28.59 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=17.2
Q ss_pred HHHHhhhhhcCCCceeEeecccccCCChhHHHHHHHHhhh
Q 025622 184 AVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTV 223 (250)
Q Consensus 184 AvIRGalrae~P~lLTViLPQSL~kQp~Es~elLe~V~~l 223 (250)
.+||=|-++-=+-..+.|+= +-....|..+.+..+..+
T Consensus 149 ~~i~~a~~~Gi~~~s~~iiG--~~Et~ed~~~~l~~lr~l 186 (309)
T TIGR00423 149 EVIKTAHRLGIPTTATMMFG--HVENPEHRVEHLLRIRKI 186 (309)
T ss_pred HHHHHHHHcCCCceeeEEec--CCCCHHHHHHHHHHHHhh
Confidence 45555555433334455542 112334444555555544
No 57
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=39.12 E-value=1.7e+02 Score=26.83 Aligned_cols=64 Identities=20% Similarity=0.234 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcCCc-eEEEeccc---ccchhHHHHHHHH--HHHHHHhCC-ceeecCCCC-chHHHHHhhhh
Q 025622 128 YLQELLAIQQQGPR-AIGFFGTR---NMGFMHQELIEIL--SYALVITKN-HIYTSGASG-TNAAVIRGALR 191 (250)
Q Consensus 128 ~lqELaaIQq~g~r-rIa~lGsR---hv~~~hq~LIEll--syAlvl~gn-~i~TSGA~G-tNaAvIRGalr 191 (250)
|..||.++++.|.. ++-..=|| +.+++...|-|.. -+.+...++ ++|..|..+ ...+|.+...+
T Consensus 280 y~~el~~~~~~~~~~~~~~a~Srd~~~~~yVq~~l~~~~~~~~~~l~~~~~~vYvCG~~~~M~~~V~~~L~~ 351 (382)
T cd06207 280 YKEELEEYEKSGVLTTLGTAFSRDQPKKVYVQDLIRENSDLVYQLLEEGAGVIYVCGSTWKMPPDVQEAFEE 351 (382)
T ss_pred HHHHHHHHHhCCCCceEEEEecCCCCCceEhHHHHHHCHHHHHHHHhcCCCEEEEECCcccccHHHHHHHHH
Confidence 66777777777663 23233233 2345544443311 122334566 788888887 66666554433
No 58
>TIGR00035 asp_race aspartate racemase.
Probab=39.06 E-value=23 Score=30.03 Aligned_cols=29 Identities=24% Similarity=0.589 Sum_probs=19.1
Q ss_pred cCCChhHHHHH-HHHHhcCCceEEEecccc
Q 025622 122 PVPDVDYLQEL-LAIQQQGPRAIGFFGTRN 150 (250)
Q Consensus 122 ~~p~vD~lqEL-aaIQq~g~rrIa~lGsRh 150 (250)
++|=+...++. .++++.|.|+||+|||+-
T Consensus 98 ~iPii~i~~~~~~~~~~~~~~~VgvLaT~~ 127 (229)
T TIGR00035 98 GIPLISMIEETAEAVKEDGVKKAGLLGTKG 127 (229)
T ss_pred CCCEechHHHHHHHHHHcCCCEEEEEecHH
Confidence 45544433332 355778999999999874
No 59
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=39.03 E-value=2e+02 Score=22.96 Aligned_cols=36 Identities=22% Similarity=0.144 Sum_probs=27.3
Q ss_pred HHhcCCceEEEecccccchhHHHHHHHHHHHHHHhC
Q 025622 135 IQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITK 170 (250)
Q Consensus 135 IQq~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~g 170 (250)
+.++|.++|+++|.......++.-++=...++...|
T Consensus 109 l~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~~ 144 (260)
T cd06286 109 LIQKGYRKIAYCIGRKKSLNSQSRKKAYKDALEEYG 144 (260)
T ss_pred HHHCCCceEEEEcCCcccchhHHHHHHHHHHHHHcC
Confidence 566799999999876555566777777777777665
No 60
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=38.63 E-value=1.9e+02 Score=26.57 Aligned_cols=66 Identities=20% Similarity=0.194 Sum_probs=43.2
Q ss_pred CceEEEecccccchhHHHHHHHHHHHHHHhCCc-eeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhHHH
Q 025622 140 PRAIGFFGTRNMGFMHQELIEILSYALVITKNH-IYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQE 215 (250)
Q Consensus 140 ~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~-i~TSGA~GtNaAvIRGalrae~P~lLTViLPQSL~kQp~Es~e 215 (250)
++.+||-|+ -=|.+|-.|.|++.++-...-+. |.|.|.- -.+++-. . ..++.+.| ||+--.+|..+
T Consensus 130 ~~~v~iSl~-GEPlL~p~l~eli~~~k~~Gi~~~L~TNG~~---~e~l~~L-~-~~~d~i~V----SLda~~~e~~~ 196 (322)
T PRK13762 130 PKHVAISLS-GEPTLYPYLPELIEEFHKRGFTTFLVTNGTR---PDVLEKL-E-EEPTQLYV----SLDAPDEETYK 196 (322)
T ss_pred CCEEEEeCC-ccccchhhHHHHHHHHHHcCCCEEEECCCCC---HHHHHHH-H-hcCCEEEE----EccCCCHHHHH
Confidence 678999988 78999999999999887653332 3577732 3455443 3 36666655 55554455443
No 61
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=38.18 E-value=54 Score=30.79 Aligned_cols=67 Identities=24% Similarity=0.321 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHH----hCCcee--ecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhHHHHHHHH-hhhhcCC
Q 025622 155 HQELIEILSYALVI----TKNHIY--TSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKV-KTVIEKP 227 (250)
Q Consensus 155 hq~LIEllsyAlvl----~gn~i~--TSGA~GtNaAvIRGalrae~P~lLTViLPQSL~kQp~Es~elLe~V-~~lvE~p 227 (250)
+.--..|+.+|... .|.+|+ |||-||.-.|.+--++- =.+++++|.. +.+|-+++|+-. .+||+-|
T Consensus 43 DR~A~~mI~~Ae~~G~l~pG~tIVE~TSGNTGI~LA~vaa~~G----y~~iivmP~~---~S~er~~~l~a~GAevi~t~ 115 (300)
T COG0031 43 DRIALYMIEDAEKRGLLKPGGTIVEATSGNTGIALAMVAAAKG----YRLIIVMPET---MSQERRKLLRALGAEVILTP 115 (300)
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEcCCChHHHHHHHHHHHcC----CcEEEEeCCC---CCHHHHHHHHHcCCEEEEcC
Confidence 44445677788744 488887 99999999888755543 3688999974 456666666543 2344444
Q ss_pred C
Q 025622 228 H 228 (250)
Q Consensus 228 e 228 (250)
.
T Consensus 116 ~ 116 (300)
T COG0031 116 G 116 (300)
T ss_pred C
Confidence 4
No 62
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=37.90 E-value=81 Score=31.95 Aligned_cols=38 Identities=29% Similarity=0.554 Sum_probs=27.7
Q ss_pred ccccCCC---hh-HHHHHHHHHh-cCCceEEEecccccchhHH
Q 025622 119 EFKPVPD---VD-YLQELLAIQQ-QGPRAIGFFGTRNMGFMHQ 156 (250)
Q Consensus 119 ~~~~~p~---vD-~lqELaaIQq-~g~rrIa~lGsRhv~~~hq 156 (250)
+++++.= +| ++++|.+|++ .|++.|+++|+-+......
T Consensus 115 ~~~~isWdeAl~~iA~~l~~i~~~~G~~~i~~~~~g~~~~~~~ 157 (830)
T PRK13532 115 EFTPVSWDQAFDVMAEKFKKALKEKGPTAVGMFGSGQWTIWEG 157 (830)
T ss_pred CeEEecHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCcchHHH
Confidence 5666662 66 6788888754 7999999999877765443
No 63
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=37.59 E-value=42 Score=31.17 Aligned_cols=37 Identities=27% Similarity=0.353 Sum_probs=27.1
Q ss_pred CCChh-HHHHHHHHHhcCCceEEEecccccchh--HHHHHH
Q 025622 123 VPDVD-YLQELLAIQQQGPRAIGFFGTRNMGFM--HQELIE 160 (250)
Q Consensus 123 ~p~vD-~lqELaaIQq~g~rrIa~lGsRhv~~~--hq~LIE 160 (250)
.|.++ |++.|...++.| ++||++|.-==||+ |+.|||
T Consensus 121 ~~~~~~y~~~l~~~~~~~-~~i~~~~g~fdP~t~GH~~li~ 160 (332)
T TIGR00124 121 ATRLKRYCSTLPKPRTPG-NKIGSIVMNANPFTNGHRYLIE 160 (332)
T ss_pred CcCHHHHHHHHHHhccCC-CcEEEEEeCcCCCchHHHHHHH
Confidence 46665 999999887765 67888887777876 555554
No 64
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=37.14 E-value=1.7e+02 Score=26.96 Aligned_cols=74 Identities=20% Similarity=0.309 Sum_probs=54.6
Q ss_pred cCCChhHHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhCCceeecCCC-C----chH-HHHHhhhhhcCC
Q 025622 122 PVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGAS-G----TNA-AVIRGALRAERP 195 (250)
Q Consensus 122 ~~p~vD~lqELaaIQq~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~-G----tNa-AvIRGalrae~P 195 (250)
.+|-+|+..+|.+.-.+..++|.++|... ..+|-.++-|.....++--.|.. | +.. |+|+ .+.+.+|
T Consensus 90 rv~G~Dl~~~Ll~~a~~~~~~vfllGgkp------~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~-~I~~s~p 162 (253)
T COG1922 90 RVAGTDLVEALLKRAAEEGKRVFLLGGKP------GVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVE-RIAASGP 162 (253)
T ss_pred cCChHHHHHHHHHHhCccCceEEEecCCH------HHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHH-HHHhcCC
Confidence 66778999999999888899999999974 67777778888877755444443 2 222 4444 4555599
Q ss_pred CceeEee
Q 025622 196 DLLTVIL 202 (250)
Q Consensus 196 ~lLTViL 202 (250)
++|.|=+
T Consensus 163 dil~Vgm 169 (253)
T COG1922 163 DILLVGM 169 (253)
T ss_pred CEEEEeC
Confidence 9999965
No 65
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=37.03 E-value=1.1e+02 Score=28.81 Aligned_cols=29 Identities=14% Similarity=0.222 Sum_probs=23.9
Q ss_pred CceEEEecccccchhHHHHHHHHHHHHHHhCCceee
Q 025622 140 PRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYT 175 (250)
Q Consensus 140 ~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~T 175 (250)
.++|||+|.-+||.. |+.+|+..||+++-
T Consensus 3 ~~kI~VIGlG~~G~~-------~A~~La~~G~~V~~ 31 (415)
T PRK11064 3 FETISVIGLGYIGLP-------TAAAFASRQKQVIG 31 (415)
T ss_pred ccEEEEECcchhhHH-------HHHHHHhCCCEEEE
Confidence 478999999999974 78888888988753
No 66
>PF11868 DUF3388: Protein of unknown function (DUF3388); InterPro: IPR024514 This domain is found in a family of bacterial proteins that are functionally uncharacterised. Proteins in this family are typically between 261 to 275 amino acids in length and have a N-terminal ACT domain.
Probab=36.53 E-value=40 Score=30.41 Aligned_cols=89 Identities=21% Similarity=0.488 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhh----c--CCCcee
Q 025622 126 VDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRA----E--RPDLLT 199 (250)
Q Consensus 126 vD~lqELaaIQq~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalra----e--~P~lLT 199 (250)
||++.|| +.+.|-+-|||=|.--||=+- -++|-+....+..++-| +..||-.+|. + +++ .
T Consensus 42 VDFmaEl--~K~~Gh~lIGiRGmPRVGKTE----sivAasVcAnKrW~f~S------STlikQTvRs~L~~dE~~~~--~ 107 (192)
T PF11868_consen 42 VDFMAEL--FKEEGHKLIGIRGMPRVGKTE----SIVAASVCANKRWLFLS------STLIKQTVRSQLIEDEYNEN--N 107 (192)
T ss_pred HHHHHHH--HHhcCceEEeecCCCccCchh----HHHHHhhhcCceEEEee------HHHHHHHHHHHhhhcccCcC--c
Confidence 7999997 468999999999988888664 25566677777778766 3445544443 1 233 3
Q ss_pred Eeec---ccccCCChhHHHHHHHHhh-----hhcCCC
Q 025622 200 VILP---QSLKKQPPESQELLAKVKT-----VIEKPH 228 (250)
Q Consensus 200 ViLP---QSL~kQp~Es~elLe~V~~-----lvE~pe 228 (250)
|.+= -|-.|.++.-+.++.+|+. +||+|+
T Consensus 108 ifIIDGivSt~r~~e~H~~Lvreim~lP~~KVvEHPD 144 (192)
T PF11868_consen 108 IFIIDGIVSTRRSNERHWQLVREIMRLPATKVVEHPD 144 (192)
T ss_pred EEEEeeeeeeccCCHHHHHHHHHHHcCCCceeeeCCc
Confidence 3332 2556788889999999986 688885
No 67
>PF09743 DUF2042: Uncharacterized conserved protein (DUF2042); InterPro: IPR018611 The ubiquitin fold modifier 1 (Ufm1) is the most recently discovered ubiquitin-like modifier whose conjugation (ufmylation) system is conserved in multicellular organisms. Ufm1 is known to covalently attach with cellular protein(s) via a specific E1-activating enzyme (Uba5), an E2-conjugating enzyme (Ufc1), and a E3-ligating enzyme []. This entry represents E3 UFM1-protein ligase 1.
Probab=36.43 E-value=7.8 Score=35.18 Aligned_cols=112 Identities=23% Similarity=0.340 Sum_probs=72.0
Q ss_pred CCCcccccccccccccCCccccCCCCccchhhhcccceeeecccccCCC--hh-HHHHHH-HHHhcCCceEEEecccccc
Q 025622 77 MDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPD--VD-YLQELL-AIQQQGPRAIGFFGTRNMG 152 (250)
Q Consensus 77 ~~~~~~~~~~~~~~f~~d~~~~~~iptq~~~vv~g~~~v~~~~~~~~p~--vD-~lqELa-aIQq~g~rrIa~lGsRhv~ 152 (250)
..++|-.-.++....+-|.+ .|=.+++.+++....+....-.-+.+ +| ++.|+. .+|+.|.-.|+=|- +...
T Consensus 66 ~~gGRv~~~dL~~~LnVd~~---~ie~~~~~i~~~~~~~~l~~gelit~~Yld~l~~Eine~Lqe~G~vsi~eLa-~~~~ 141 (272)
T PF09743_consen 66 VHGGRVNLVDLAQALNVDLD---HIERRAQEIVKSDKSLQLVQGELITDSYLDSLAEEINEKLQESGQVSISELA-KQYD 141 (272)
T ss_pred HcCCceEHHHHHHhcCcCHH---HHHHHHHHHHhCCCcEEEECCEEccHHHHHHHHHHHHHHHHHcCeEeHHHHH-HhcC
Confidence 44566666677777777776 56667777777665444444444443 66 778875 46888877777664 3333
Q ss_pred hhHHHHH-HHHHH---HH---HHhCCceeecCCCCchHHHHHhhhhh
Q 025622 153 FMHQELI-EILSY---AL---VITKNHIYTSGASGTNAAVIRGALRA 192 (250)
Q Consensus 153 ~~hq~LI-Ellsy---Al---vl~gn~i~TSGA~GtNaAvIRGalra 192 (250)
+--.-|. ++++. .+ .+.|+.|||.-=-..+-|.|||+++|
T Consensus 142 Lp~efl~~~li~~~lg~~I~g~~d~~~lyT~ayv~r~ka~iRG~l~a 188 (272)
T PF09743_consen 142 LPSEFLKEELISKRLGKIIKGRLDGDVLYTEAYVARQKARIRGALSA 188 (272)
T ss_pred CcHHHHHHHHhhhhcCcceeEEEeCCEEecHHHHHHHHHHHHHHHhc
Confidence 3333333 22222 11 34678999998889999999999998
No 68
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=36.25 E-value=84 Score=27.82 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHH
Q 025622 128 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVI 168 (250)
Q Consensus 128 ~lqELaaIQq~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl 168 (250)
+.+.+..+.+.|.+.|.|.|. =|++|..++|++.++-..
T Consensus 48 i~~~i~~~~~~gv~~V~ltGG--EPll~~~l~~li~~i~~~ 86 (334)
T TIGR02666 48 IERLVRAFVGLGVRKVRLTGG--EPLLRKDLVELVARLAAL 86 (334)
T ss_pred HHHHHHHHHHCCCCEEEEECc--cccccCCHHHHHHHHHhc
Confidence 444444455667888888874 477888888888775443
No 69
>PLN02778 3,5-epimerase/4-reductase
Probab=35.95 E-value=1e+02 Score=26.86 Aligned_cols=55 Identities=13% Similarity=0.138 Sum_probs=41.9
Q ss_pred hcCCceEEEecccccchhHHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhhcCCCc
Q 025622 137 QQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDL 197 (250)
Q Consensus 137 q~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~P~l 197 (250)
+..+++|-|.|. -||+=.+|++.|. ..|+.+..+.+.-++...+++.++..+||.
T Consensus 6 ~~~~~kiLVtG~--tGfiG~~l~~~L~----~~g~~V~~~~~~~~~~~~v~~~l~~~~~D~ 60 (298)
T PLN02778 6 GSATLKFLIYGK--TGWIGGLLGKLCQ----EQGIDFHYGSGRLENRASLEADIDAVKPTH 60 (298)
T ss_pred CCCCCeEEEECC--CCHHHHHHHHHHH----hCCCEEEEecCccCCHHHHHHHHHhcCCCE
Confidence 345678999996 4899999988664 458888755555667788999999878875
No 70
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=35.94 E-value=75 Score=26.98 Aligned_cols=40 Identities=23% Similarity=0.304 Sum_probs=24.2
Q ss_pred chhHHHHHHHHHHHHHHh---CCceeecCCCCchHHHHHhhhh
Q 025622 152 GFMHQELIEILSYALVIT---KNHIYTSGASGTNAAVIRGALR 191 (250)
Q Consensus 152 ~~~hq~LIEllsyAlvl~---gn~i~TSGA~GtNaAvIRGalr 191 (250)
.-+=+.+++.++.-+-.. .+-++|+|+|-.|..+++.+.+
T Consensus 37 ~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~ 79 (345)
T cd06450 37 TEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARD 79 (345)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHH
Confidence 333344444444333221 3678888888888888888764
No 71
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=35.73 E-value=2.5e+02 Score=23.09 Aligned_cols=77 Identities=23% Similarity=0.283 Sum_probs=50.3
Q ss_pred ccCCChhHHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhCCceeecCC-CC----chHHHHHhhhhhcCC
Q 025622 121 KPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGA-SG----TNAAVIRGALRAERP 195 (250)
Q Consensus 121 ~~~p~vD~lqELaaIQq~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA-~G----tNaAvIRGalrae~P 195 (250)
..++..|++.+|...=++..++|.++|+.. ..+|-+...|....-.|-.-|. .| .-...|--.+++.+|
T Consensus 29 ~rv~g~dl~~~l~~~~~~~~~~ifllG~~~------~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~p 102 (172)
T PF03808_consen 29 ERVTGSDLFPDLLRRAEQRGKRIFLLGGSE------EVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGP 102 (172)
T ss_pred cccCHHHHHHHHHHHHHHcCCeEEEEeCCH------HHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCC
Confidence 445557899999887777788999999973 4555555555555333333332 22 234444456666799
Q ss_pred CceeEeec
Q 025622 196 DLLTVILP 203 (250)
Q Consensus 196 ~lLTViLP 203 (250)
+++-|-|.
T Consensus 103 div~vglG 110 (172)
T PF03808_consen 103 DIVFVGLG 110 (172)
T ss_pred CEEEEECC
Confidence 99999886
No 72
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=35.55 E-value=1.4e+02 Score=24.11 Aligned_cols=76 Identities=21% Similarity=0.244 Sum_probs=52.3
Q ss_pred hcCCceEEEecccccchhHHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhHHHH
Q 025622 137 QQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQEL 216 (250)
Q Consensus 137 q~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~P~lLTViLPQSL~kQp~Es~el 216 (250)
+-|.||||+-++.....+.+ +...+..-........|+-..+.++++.+-|=||-.++-..-+..+.
T Consensus 4 D~G~kriGvA~~d~~~~~a~-------------pl~~i~~~~~~~~~~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~a~~ 70 (130)
T TIGR00250 4 DFGTKSIGVAGQDITGWTAQ-------------GIPTIKAQDGEPDWSRIEELLKEWTPDKIVVGLPLNMDGTEGPLTER 70 (130)
T ss_pred ccCCCeEEEEEECCCCCEEe-------------ceEEEEecCCcHHHHHHHHHHHHcCCCEEEEeccCCCCcCcCHHHHH
Confidence 45899999998877664432 22233332334557888889999999999999999998877665555
Q ss_pred HHHHhhhhc
Q 025622 217 LAKVKTVIE 225 (250)
Q Consensus 217 Le~V~~lvE 225 (250)
..+....++
T Consensus 71 v~~f~~~L~ 79 (130)
T TIGR00250 71 AQKFANRLE 79 (130)
T ss_pred HHHHHHHHH
Confidence 554444443
No 73
>COG3479 Phenolic acid decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.33 E-value=20 Score=31.68 Aligned_cols=18 Identities=56% Similarity=0.918 Sum_probs=15.1
Q ss_pred hhcCCC------CCCCChHHHhhh
Q 025622 223 VIEKPH------NDHLPLIEASRY 240 (250)
Q Consensus 223 lvE~pe------nD~LpL~eAS~l 240 (250)
++|.|| |||++|.++||-
T Consensus 97 v~ehPEitvCyQNDhidLM~esRe 120 (175)
T COG3479 97 VVEHPEITVCYQNDHIDLMEESRE 120 (175)
T ss_pred hhcCCcEEEEeecCchhHHHHhHH
Confidence 667774 999999999983
No 74
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=35.03 E-value=48 Score=25.95 Aligned_cols=50 Identities=24% Similarity=0.277 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhCCceeecCCCCchH
Q 025622 128 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNA 183 (250)
Q Consensus 128 ~lqELaaIQq~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNa 183 (250)
++++++. +.|-..+ ....+|=--..|.|.+..++ ..++-|+|+|++|...
T Consensus 21 ~l~~~l~--~~G~~v~---~~~~v~Dd~~~i~~~l~~~~-~~~D~VittGG~g~~~ 70 (144)
T PF00994_consen 21 FLAALLE--ELGIEVI---RYGIVPDDPDAIKEALRRAL-DRADLVITTGGTGPGP 70 (144)
T ss_dssp HHHHHHH--HTTEEEE---EEEEEESSHHHHHHHHHHHH-HTTSEEEEESSSSSST
T ss_pred HHHHHHH--HcCCeee---EEEEECCCHHHHHHHHHhhh-ccCCEEEEcCCcCccc
Confidence 5655544 3454222 22233333455666664443 3449999999999653
No 75
>PF14838 INTS5_C: Integrator complex subunit 5 C-terminus
Probab=34.85 E-value=8.9 Score=39.69 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=33.1
Q ss_pred CChhHHHHHHHHhhhhcCCCCCCCC-hHHHhhhhhhhhh
Q 025622 209 QPPESQELLAKVKTVIEKPHNDHLP-LIEASRYTISFAF 246 (250)
Q Consensus 209 Qp~Es~elLe~V~~lvE~penD~Lp-L~eAS~lCns~~~ 246 (250)
++.|...+|..+.++++.-+.+..+ ...++.++.....
T Consensus 272 t~~e~~qLl~NL~~L~k~eks~~~~~~~~~~~l~~Al~~ 310 (696)
T PF14838_consen 272 TPTEATQLLQNLALLAKWEKSGNVPPASMSSQLTQALSS 310 (696)
T ss_pred CcHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHH
Confidence 8999999999999999998888888 7788888876554
No 76
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=34.85 E-value=76 Score=30.04 Aligned_cols=68 Identities=26% Similarity=0.383 Sum_probs=54.0
Q ss_pred HhcCCceEEEecc-ccc--------chhHHHHHHHHHHHHHHhCCc------eeecCCCCchHHHHHhhhhhcCCCceeE
Q 025622 136 QQQGPRAIGFFGT-RNM--------GFMHQELIEILSYALVITKNH------IYTSGASGTNAAVIRGALRAERPDLLTV 200 (250)
Q Consensus 136 Qq~g~rrIa~lGs-Rhv--------~~~hq~LIEllsyAlvl~gn~------i~TSGA~GtNaAvIRGalrae~P~lLTV 200 (250)
+..|+|.|+++=. ..+ .+..+...|-+-+|+-.+++. |-|-|+..-.|--|..++|. .|.-++|
T Consensus 45 ~kr~srvI~~Ihrqe~~~~~giPi~~~I~i~dse~v~raI~~~~~~~~IdLii~TpGG~v~AA~~I~~~l~~-~~~~v~v 123 (285)
T PF01972_consen 45 EKRGSRVITLIHRQERVSFLGIPIYRYIDIDDSEFVLRAIREAPKDKPIDLIIHTPGGLVDAAEQIARALRE-HPAKVTV 123 (285)
T ss_pred HHhCCEEEEEEEeccccceeccccceeEcHhhHHHHHHHHHhcCCCCceEEEEECCCCcHHHHHHHHHHHHh-CCCCEEE
Confidence 4589998887621 223 347777888888998877653 67999999999999999998 8999999
Q ss_pred eecc
Q 025622 201 ILPQ 204 (250)
Q Consensus 201 iLPQ 204 (250)
+.|.
T Consensus 124 ~VP~ 127 (285)
T PF01972_consen 124 IVPH 127 (285)
T ss_pred EECc
Confidence 9986
No 77
>PRK06256 biotin synthase; Validated
Probab=34.58 E-value=2.2e+02 Score=25.30 Aligned_cols=65 Identities=8% Similarity=-0.005 Sum_probs=41.0
Q ss_pred hHHHHHHHHHhcCCceEEEecccccchhH--HHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhh
Q 025622 127 DYLQELLAIQQQGPRAIGFFGTRNMGFMH--QELIEILSYALVITKNHIYTSGASGTNAAVIRGALRA 192 (250)
Q Consensus 127 D~lqELaaIQq~g~rrIa~lGsRhv~~~h--q~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalra 192 (250)
+++.|...+.+.|.+++.|.++-+-|... ..+.|++.+.-...+=++.+|.+. .+...++-.-+|
T Consensus 95 eI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g~-l~~e~l~~Lkea 161 (336)
T PRK06256 95 ELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLGL-LTEEQAERLKEA 161 (336)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCCc-CCHHHHHHHHHh
Confidence 48888888888898888888765555433 467777776554444456666554 455555433333
No 78
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=34.54 E-value=33 Score=28.15 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=34.4
Q ss_pred eEEEecccccchhHHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhhcCCCceeEee
Q 025622 142 AIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVIL 202 (250)
Q Consensus 142 rIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~P~lLTViL 202 (250)
||.++|.-++=++.. .+.....-|+.|.|+|+.=+.|.. +..++++|=
T Consensus 1 ~il~iG~~~iD~~~~------------~~~~~~~~GG~~~Nva~~la~lG~-~~~~i~~vG 48 (254)
T cd01937 1 KIVIIGHVTIDEIVT------------NGSGVVKPGGPATYASLTLSRLGL-TVKLVTKVG 48 (254)
T ss_pred CeEEEcceeEEEEec------------CCceEEecCchhhhHHHHHHHhCC-CeEEEEeeC
Confidence 467777766665532 244567779999999998888877 777777754
No 79
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=34.43 E-value=51 Score=24.02 Aligned_cols=14 Identities=21% Similarity=0.482 Sum_probs=7.0
Q ss_pred CChHHHhhhhhhhh
Q 025622 232 LPLIEASRYTISFA 245 (250)
Q Consensus 232 LpL~eAS~lCns~~ 245 (250)
+++.+...+|...-
T Consensus 109 ~~~~~l~~~~~~~~ 122 (170)
T cd01494 109 VPLKEIRKIAKEYG 122 (170)
T ss_pred cCHHHHHHHHHHcC
Confidence 44445555555443
No 80
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=34.26 E-value=71 Score=26.35 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=11.6
Q ss_pred CceeecCCCCchHHHHHhhh
Q 025622 171 NHIYTSGASGTNAAVIRGAL 190 (250)
Q Consensus 171 n~i~TSGA~GtNaAvIRGal 190 (250)
+-++|+|+++.+.+++++..
T Consensus 61 ~~~~~~~~t~a~~~~~~~~~ 80 (350)
T cd00609 61 EIVVTNGAQEALSLLLRALL 80 (350)
T ss_pred eEEEecCcHHHHHHHHHHhC
Confidence 45566666666556655554
No 81
>PRK03321 putative aminotransferase; Provisional
Probab=33.91 E-value=37 Score=29.36 Aligned_cols=21 Identities=5% Similarity=0.121 Sum_probs=11.3
Q ss_pred CCceeecCCCCchHHHHHhhh
Q 025622 170 KNHIYTSGASGTNAAVIRGAL 190 (250)
Q Consensus 170 gn~i~TSGA~GtNaAvIRGal 190 (250)
+|-++|+|+++...++++..+
T Consensus 75 ~~I~~~~G~~~~l~~~~~~~~ 95 (352)
T PRK03321 75 EHVAVGCGSVALCQQLVQATA 95 (352)
T ss_pred HHEEECCCHHHHHHHHHHHhc
Confidence 355556666555555555444
No 82
>COG5039 Exopolysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=33.60 E-value=1.2e+02 Score=29.55 Aligned_cols=67 Identities=33% Similarity=0.398 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcCC-ceEEEecccccchh---HHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhhcCCCceeEeec
Q 025622 128 YLQELLAIQQQGP-RAIGFFGTRNMGFM---HQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILP 203 (250)
Q Consensus 128 ~lqELaaIQq~g~-rrIa~lGsRhv~~~---hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~P~lLTViLP 203 (250)
.++|+..|-..-+ --|+|-|.-|+|=+ ||+.-|.+- +. =||-=+|+||
T Consensus 74 s~se~~~~~s~~~e~~i~~~GGGNlGDLypd~q~fRe~Ii---------------------------st-f~d~~iI~lP 125 (339)
T COG5039 74 SASELIEIKSDIPEDIIFFTGGGNLGDLYPDYQNFREKII---------------------------ST-FPDYKIIILP 125 (339)
T ss_pred chhhhhhhhcCCccceEEEeCCCchhhcchhhHHHHHHHH---------------------------Hh-CCCCceEecc
Confidence 5577777666555 56777777777744 566655432 22 7899999999
Q ss_pred ccccCCChhHHHHHHHHhhhhc
Q 025622 204 QSLKKQPPESQELLAKVKTVIE 225 (250)
Q Consensus 204 QSL~kQp~Es~elLe~V~~lvE 225 (250)
||.-=|- |+.|+|-..+--
T Consensus 126 QSiyF~d---~~nLkkaa~iyn 144 (339)
T COG5039 126 QSIYFQD---QKNLKKAADIYN 144 (339)
T ss_pred ceeeecc---HHHHHHHHHHHh
Confidence 9998887 778888776653
No 83
>PF12308 Noelin-1: Neurogenesis glycoprotein; InterPro: IPR022082 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02191 from PFAM. There are two conserved sequence motifs: SAQ and VQN. Noelin-1 is a glycoprotein which is secreted mainly by postmitotic neurogenic tissues in the developing central and peripheral nervous systems, first appearing after neural tube closure. It is likely that it forms large multimeric complexes.It has a divergent function in neurogenesis. In animal caps neuralized by expression of noggin, co-expression of Noelin-1 causes expression of neuronal differentiation markers several stages before neurogenesis normally occurs in this tissue. Finally, only secreted forms of the protein can activate sensory marker expression, while all forms of the protein can induce early neurogenesis.
Probab=33.20 E-value=41 Score=27.75 Aligned_cols=32 Identities=38% Similarity=0.590 Sum_probs=24.6
Q ss_pred hcCCC---ceeEeecc----cccCCChhHHHHHHHHhhh
Q 025622 192 AERPD---LLTVILPQ----SLKKQPPESQELLAKVKTV 223 (250)
Q Consensus 192 ae~P~---lLTViLPQ----SL~kQp~Es~elLe~V~~l 223 (250)
|+||+ .-||+.|+ |-+--....|.+||||.|+
T Consensus 14 Aqd~dGrCvCTVvaP~q~~CSrD~r~~qlrqllekVqNm 52 (101)
T PF12308_consen 14 AQDPDGRCVCTVVAPQQNLCSRDARSRQLRQLLEKVQNM 52 (101)
T ss_pred ccCCCCCEEEEEecCCcchhccCccHHHHHHHHHHHHHH
Confidence 34555 57999997 5566677889999999986
No 84
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=33.05 E-value=73 Score=27.35 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHh-CCceeecCCCCchHHHHHhhh
Q 025622 155 HQELIEILSYALVIT-KNHIYTSGASGTNAAVIRGAL 190 (250)
Q Consensus 155 hq~LIEllsyAlvl~-gn~i~TSGA~GtNaAvIRGal 190 (250)
+.++.+.++.-+-.. .+-++|+|+++.|.++|+.+.
T Consensus 61 ~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~ 97 (371)
T PRK13520 61 EEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAAR 97 (371)
T ss_pred HHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHH
Confidence 344445554433221 234666666666666666553
No 85
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=32.38 E-value=40 Score=25.34 Aligned_cols=14 Identities=14% Similarity=0.318 Sum_probs=12.5
Q ss_pred hCCceeecCCCCch
Q 025622 169 TKNHIYTSGASGTN 182 (250)
Q Consensus 169 ~gn~i~TSGA~GtN 182 (250)
.||.+|+||-.|.+
T Consensus 6 ~g~~v~vSG~~~~~ 19 (101)
T cd06155 6 TGGLLWISNVTASE 19 (101)
T ss_pred ECCEEEEecCCCCC
Confidence 58999999999876
No 86
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=32.27 E-value=89 Score=25.84 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=14.6
Q ss_pred ceEEEecccccchhHHHHH-HHHHHHHH
Q 025622 141 RAIGFFGTRNMGFMHQELI-EILSYALV 167 (250)
Q Consensus 141 rrIa~lGsRhv~~~hq~LI-EllsyAlv 167 (250)
+.|.|.| -=|++|..++ |++.|+-.
T Consensus 67 ~~I~~~G--GEPll~~~~~~~li~~~~~ 92 (235)
T TIGR02493 67 GGVTFSG--GEPLLQPEFLSELFKACKE 92 (235)
T ss_pred CeEEEeC--cccccCHHHHHHHHHHHHH
Confidence 4566666 5566666643 66665543
No 87
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=32.19 E-value=56 Score=27.27 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhCCceeecCCCCchH
Q 025622 128 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNA 183 (250)
Q Consensus 128 ~lqELaaIQq~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNa 183 (250)
++.++ +++.|-+.+. ...+|==...|.+.+.+++. ...-|+|||++|...
T Consensus 23 ~l~~~--L~~~G~~v~~---~~~v~Dd~~~I~~~l~~~~~-~~dlVIttGG~G~t~ 72 (170)
T cd00885 23 FLAKE--LAELGIEVYR---VTVVGDDEDRIAEALRRASE-RADLVITTGGLGPTH 72 (170)
T ss_pred HHHHH--HHHCCCEEEE---EEEeCCCHHHHHHHHHHHHh-CCCEEEECCCCCCCC
Confidence 44443 4456654322 33455556778888888875 578999999999764
No 88
>PLN03075 nicotianamine synthase; Provisional
Probab=32.04 E-value=1.2e+02 Score=28.28 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=23.4
Q ss_pred HHHHHHHhc---CCceEEEecccccchhHHHH
Q 025622 130 QELLAIQQQ---GPRAIGFFGTRNMGFMHQEL 158 (250)
Q Consensus 130 qELaaIQq~---g~rrIa~lGsRhv~~~hq~L 158 (250)
.|...+.+. ++|+|+++|+-..|+++.-+
T Consensus 111 lE~~~L~~~~~~~p~~VldIGcGpgpltaiil 142 (296)
T PLN03075 111 LEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVL 142 (296)
T ss_pred HHHHHHHHhhcCCCCEEEEECCCCcHHHHHHH
Confidence 476666554 99999999999999988543
No 89
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=31.96 E-value=54 Score=25.38 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCce--EEEecccccchhHHHHHHHHHHHHHHhCCceeecCCCCch
Q 025622 128 YLQELLAIQQQGPRA--IGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTN 182 (250)
Q Consensus 128 ~lqELaaIQq~g~rr--Ia~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtN 182 (250)
++.++ +++.|-.. ..++. ==...|.|.+.+++. .-+-|+|+|++|.-
T Consensus 22 ~l~~~--l~~~G~~~~~~~~v~-----Dd~~~I~~~l~~~~~-~~dliittGG~g~g 70 (135)
T smart00852 22 ALAEL--LTELGIEVTRYVIVP-----DDKEAIKEALREALE-RADLVITTGGTGPG 70 (135)
T ss_pred HHHHH--HHHCCCeEEEEEEeC-----CCHHHHHHHHHHHHh-CCCEEEEcCCCCCC
Confidence 66666 56777543 33332 223445566666654 46899999999954
No 90
>PLN02822 serine palmitoyltransferase
Probab=31.72 E-value=43 Score=31.78 Aligned_cols=47 Identities=23% Similarity=0.224 Sum_probs=31.8
Q ss_pred EEecccccc---hhHHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhh
Q 025622 144 GFFGTRNMG---FMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALR 191 (250)
Q Consensus 144 a~lGsRhv~---~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalr 191 (250)
+.-|+|++. =.|.+|-|-|+.-+--...-+||+|++ +|.++|+....
T Consensus 142 g~~g~r~~yg~~~~~~~Lee~La~~~~~~~~i~~s~G~~-a~~sai~a~~~ 191 (481)
T PLN02822 142 GSCGPRGFYGTIDVHLDCETKIAKFLGTPDSILYSYGLS-TIFSVIPAFCK 191 (481)
T ss_pred CCcccCccccCHHHHHHHHHHHHHHhCCCCEEEECCHHH-HHHHHHHHhCC
Confidence 344566542 247777777777665556677788888 68999996654
No 91
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=31.41 E-value=69 Score=27.61 Aligned_cols=85 Identities=16% Similarity=0.141 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccC--------CChhHHHHHHH---Hh-hhh
Q 025622 157 ELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKK--------QPPESQELLAK---VK-TVI 224 (250)
Q Consensus 157 ~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~P~lLTViLPQSL~k--------Qp~Es~elLe~---V~-~lv 224 (250)
..+.++..+++..|.+|+++-- ...+++.++... .-. -|.++-..+. .+.+..+.|.+ +. =+|
T Consensus 86 ~a~~~~l~al~~~gd~Vlv~~~--~h~s~~~~~~~~-g~~--~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l 160 (294)
T cd00615 86 SSNKAVILAVCGPGDKILIDRN--CHKSVINGLVLS-GAV--PVYLKPERNPYYGIAGGIPPETFKKALIEHPDAKAAVI 160 (294)
T ss_pred HHHHHHHHHcCCCCCEEEEeCC--chHHHHHHHHHC-CCE--EEEecCccCcccCcCCCCCHHHHHHHHHhCCCceEEEE
Confidence 3456666777778888887632 233444443332 222 2333322221 12223333321 11 133
Q ss_pred cCCC--CCCCChHHHhhhhhhhhh
Q 025622 225 EKPH--NDHLPLIEASRYTISFAF 246 (250)
Q Consensus 225 E~pe--nD~LpL~eAS~lCns~~~ 246 (250)
-.|. ..-.++.+-..+|.....
T Consensus 161 ~~p~~~G~~~dl~~I~~~~~~~g~ 184 (294)
T cd00615 161 TNPTYYGICYNLRKIVEEAHHRGL 184 (294)
T ss_pred ECCCCCCEecCHHHHHHHHHhcCC
Confidence 3442 234578888888876543
No 92
>PRK02769 histidine decarboxylase; Provisional
Probab=31.19 E-value=69 Score=29.70 Aligned_cols=49 Identities=18% Similarity=0.172 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHhCCc---eeecCCCCchHHHHHhhhhhcCCCceeEeecc
Q 025622 154 MHQELIEILSYALVITKNH---IYTSGASGTNAAVIRGALRAERPDLLTVILPQ 204 (250)
Q Consensus 154 ~hq~LIEllsyAlvl~gn~---i~TSGA~GtNaAvIRGalrae~P~lLTViLPQ 204 (250)
+=.+.+++++.-+-..... ++|||||..|--++..|... .|+ -.||.++
T Consensus 66 ~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~-~~~-~~ii~s~ 117 (380)
T PRK02769 66 FERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLAREL-FPD-GTLYYSK 117 (380)
T ss_pred HHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHh-CCC-cEEEeCC
Confidence 3345555556444433222 78999888887666555322 232 2455554
No 93
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=30.76 E-value=97 Score=28.36 Aligned_cols=25 Identities=12% Similarity=0.166 Sum_probs=15.5
Q ss_pred hhcCCCCC---CCChHHHhhhhhhhhhc
Q 025622 223 VIEKPHND---HLPLIEASRYTISFAFF 247 (250)
Q Consensus 223 lvE~penD---~LpL~eAS~lCns~~~~ 247 (250)
+||.|.|- -.++.+-.++|...-.+
T Consensus 151 ~ie~p~NptG~v~dl~~I~~la~~~gi~ 178 (390)
T PRK08133 151 FLETPSNPLTELADIAALAEIAHAAGAL 178 (390)
T ss_pred EEECCCCCCCCcCCHHHHHHHHHHcCCE
Confidence 45667663 45677777788665443
No 94
>PLN03083 E3 UFM1-protein ligase 1 homolog; Provisional
Probab=30.68 E-value=19 Score=38.03 Aligned_cols=109 Identities=22% Similarity=0.303 Sum_probs=64.9
Q ss_pred cccccccccccccCCccccCCCCccchhhhcccceeeecccccCCC--hh-HHHHHHH-HHhcCCceEEEeccc-ccc--
Q 025622 80 LRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPD--VD-YLQELLA-IQQQGPRAIGFFGTR-NMG-- 152 (250)
Q Consensus 80 ~~~~~~~~~~~f~~d~~~~~~iptq~~~vv~g~~~v~~~~~~~~p~--vD-~lqELaa-IQq~g~rrIa~lGsR-hv~-- 152 (250)
+|-.-.++....+-|-+ .|=.+++.||.....+..-.-..+-+ +| +++|+.. +|+.|.=.|+=|-.+ +.|
T Consensus 73 GRvnlvdLa~~LnVD~~---hiEr~~~~iv~~d~~~~l~~GeLit~~Yld~iaeEIne~LqE~G~isI~eLa~~~~Lpse 149 (803)
T PLN03083 73 GRVSLVDLADTIGVDLY---HVERQAQQVVSDDPGLMLVQGEIISQSYWDSIAEEINERLQECSQIALAELARQLQVGSE 149 (803)
T ss_pred CCeeHHHHhhhcCCCHH---HHHHHHHHHhcCCCceEEecCEecchHHHHHHHHHHHHHHHHcCcChHHHHHHhcCChHH
Confidence 45555566666777765 56667778777653333322222222 56 6777754 788887777655433 222
Q ss_pred hhHHHHHHHHHHHHH---HhCCceeecCCCCchHHHHHhhhhh
Q 025622 153 FMHQELIEILSYALV---ITKNHIYTSGASGTNAAVIRGALRA 192 (250)
Q Consensus 153 ~~hq~LIEllsyAlv---l~gn~i~TSGA~GtNaAvIRGalra 192 (250)
|+-..|.+-+. ... +.||.|||.-=-....|.||||++|
T Consensus 150 fl~~~l~~rlG-~iI~g~~~g~~lyT~aYv~r~~a~vRG~l~A 191 (803)
T PLN03083 150 LVTSMLEPRLG-TIVKARLEGGQLYTPAYVARVTAMVRGAARG 191 (803)
T ss_pred HHHHHHHHHhc-cceEEEecCCEEecHHHHHHHHHHHHHHHHH
Confidence 23333333222 111 4679999976677778999999999
No 95
>PRK14072 6-phosphofructokinase; Provisional
Probab=30.46 E-value=25 Score=33.58 Aligned_cols=20 Identities=35% Similarity=0.335 Sum_probs=13.5
Q ss_pred eeecCC--CCchHH---HHHhhhhh
Q 025622 173 IYTSGA--SGTNAA---VIRGALRA 192 (250)
Q Consensus 173 i~TSGA--~GtNaA---vIRGalra 192 (250)
|+|||+ .|.||| |+|-|++.
T Consensus 8 IltsGGdapGmNaaIr~vv~~a~~~ 32 (416)
T PRK14072 8 YAQSGGPTAVINASAAGVIEEARKH 32 (416)
T ss_pred EEccCCchHHHHHHHHHHHHHHHHh
Confidence 689998 899974 44444444
No 96
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=30.37 E-value=61 Score=26.28 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=23.1
Q ss_pred HhcCCceEEEecccccchhHHHHHHHHHHHHHHhCCcee
Q 025622 136 QQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIY 174 (250)
Q Consensus 136 Qq~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~ 174 (250)
+|.+.-+|+|+|.-+|+.. |+++|...||+|.
T Consensus 6 ~~~~~l~I~iIGaGrVG~~-------La~aL~~ag~~v~ 37 (127)
T PF10727_consen 6 TQAARLKIGIIGAGRVGTA-------LARALARAGHEVV 37 (127)
T ss_dssp ------EEEEECTSCCCCH-------HHHHHHHTTSEEE
T ss_pred cCCCccEEEEECCCHHHHH-------HHHHHHHCCCeEE
Confidence 3677889999999999984 7888899999874
No 97
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.29 E-value=3.2e+02 Score=22.75 Aligned_cols=36 Identities=14% Similarity=0.031 Sum_probs=21.6
Q ss_pred HHHhcCCceEEEeccc-ccchhHHHHHHHHHHHHHHhC
Q 025622 134 AIQQQGPRAIGFFGTR-NMGFMHQELIEILSYALVITK 170 (250)
Q Consensus 134 aIQq~g~rrIa~lGsR-hv~~~hq~LIEllsyAlvl~g 170 (250)
.+-++|.|+|||+|+. +.. ..+.-.+=...|+...|
T Consensus 112 ~L~~~G~~~I~~i~~~~~~~-~~~~R~~gf~~a~~~~g 148 (269)
T cd06287 112 HLRAQGARQIALIVGSARRN-SYLEAEAAYRAFAAEHG 148 (269)
T ss_pred HHHHcCCCcEEEEeCCcccc-cHHHHHHHHHHHHHHcC
Confidence 4567899999999653 332 33444454555555444
No 98
>PRK05406 LamB/YcsF family protein; Provisional
Probab=30.00 E-value=52 Score=30.19 Aligned_cols=59 Identities=31% Similarity=0.442 Sum_probs=41.8
Q ss_pred ecccccchhHHHHHHHHHHHHHHh----------CCceeecCC--------CCchHHHHHhhhhhcCCCceeEeeccc
Q 025622 146 FGTRNMGFMHQELIEILSYALVIT----------KNHIYTSGA--------SGTNAAVIRGALRAERPDLLTVILPQS 205 (250)
Q Consensus 146 lGsRhv~~~hq~LIEllsyAlvl~----------gn~i~TSGA--------~GtNaAvIRGalrae~P~lLTViLPQS 205 (250)
||-|+|.+.+.+|.+++.|=+..- =+||=.=|| .....||+++.-+. +|++.-+.+|.|
T Consensus 72 FGRR~m~~s~~el~~~v~yQigAL~~~a~~~g~~l~hVKPHGALYN~~~~d~~~a~av~~ai~~~-~~~l~l~~~~~s 148 (246)
T PRK05406 72 FGRRNMDLSPEELYALVLYQIGALQAIARAAGGRVSHVKPHGALYNMAAKDPALADAVAEAVAAV-DPSLILVGLAGS 148 (246)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeeEEeCccHHHHHHHhcCHHHHHHHHHHHHHh-CCCcEEEecCCh
Confidence 899999999999999999854322 134444444 23345777766555 999888888876
No 99
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=29.77 E-value=51 Score=29.51 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=17.6
Q ss_pred hhcCCC---CCCCChHHHhhhhhhhhhc
Q 025622 223 VIEKPH---NDHLPLIEASRYTISFAFF 247 (250)
Q Consensus 223 lvE~pe---nD~LpL~eAS~lCns~~~~ 247 (250)
++|.|. .+-.|+.+-..+|...-.+
T Consensus 183 ~i~~~~n~tG~~~~l~~i~~l~~~~~~~ 210 (410)
T PRK13392 183 AFESVYSMDGDIAPIEAICDLADRYNAL 210 (410)
T ss_pred EEeCCCCCCcccccHHHHHHHHHHcCCE
Confidence 356555 5678999999999876433
No 100
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=29.48 E-value=1.4e+02 Score=26.94 Aligned_cols=53 Identities=21% Similarity=0.125 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhhcCCCceeEeeccc
Q 025622 153 FMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQS 205 (250)
Q Consensus 153 ~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~P~lLTViLPQS 205 (250)
+=-..+.-++..|.......|+|-|+++-|.+.-=.+.-+..==..+|++|..
T Consensus 53 ~K~R~~~~~l~~a~~~G~~~vv~~~~ssGN~g~alA~~a~~~G~~~~ivvp~~ 105 (329)
T PRK14045 53 NKIRKLEYLLGDALSRGADVVITVGAVHSNHAFVTGLAAKKLGLDAVLVLRGK 105 (329)
T ss_pred chHHHHHhHHHHHHHcCCCEEEEeCccHHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 33444566777777776678888787777765544444443444589999953
No 101
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=29.36 E-value=69 Score=27.59 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHh-CCceeecCCCCchHHHHHhh
Q 025622 154 MHQELIEILSYALVIT-KNHIYTSGASGTNAAVIRGA 189 (250)
Q Consensus 154 ~hq~LIEllsyAlvl~-gn~i~TSGA~GtNaAvIRGa 189 (250)
+++++.|.++.-+-.. .+-++|+|++..|.++++.+
T Consensus 60 ~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~ 96 (373)
T TIGR03812 60 IEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAA 96 (373)
T ss_pred HHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHH
Confidence 4577777777555443 35578888877777766654
No 102
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=29.11 E-value=65 Score=26.64 Aligned_cols=45 Identities=13% Similarity=0.059 Sum_probs=28.4
Q ss_pred HHhcCCceEEEecccccchhHHHHHHHHHHHHH-HhCCceeecCCCCch
Q 025622 135 IQQQGPRAIGFFGTRNMGFMHQELIEILSYALV-ITKNHIYTSGASGTN 182 (250)
Q Consensus 135 IQq~g~rrIa~lGsRhv~~~hq~LIEllsyAlv-l~gn~i~TSGA~GtN 182 (250)
+++.|-..+ . ..++|==...|.+.+..++. ..-.-|+|||++|.-
T Consensus 31 L~~~G~~v~-~--~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g 76 (163)
T TIGR02667 31 LTEAGHRLA-D--RAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGFT 76 (163)
T ss_pred HHHCCCeEE-E--EEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCC
Confidence 556665322 1 22344345567777777764 467889999999874
No 103
>PRK08361 aspartate aminotransferase; Provisional
Probab=28.95 E-value=60 Score=28.81 Aligned_cols=22 Identities=9% Similarity=0.024 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhCCceeecC
Q 025622 156 QELIEILSYALVITKNHIYTSG 177 (250)
Q Consensus 156 q~LIEllsyAlvl~gn~i~TSG 177 (250)
++.+.++.+++...|.+|++.-
T Consensus 103 ~~al~~~~~~l~~~g~~Vlv~~ 124 (391)
T PRK08361 103 YEATYLAFESLLEEGDEVIIPD 124 (391)
T ss_pred HHHHHHHHHHhcCCCCEEEEcC
Confidence 5566666666666666666543
No 104
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=28.87 E-value=1e+02 Score=30.24 Aligned_cols=41 Identities=10% Similarity=0.160 Sum_probs=31.3
Q ss_pred hh-HHHHHHHHHhcCCceEEEecccccch-hHHHHHHHHHHHH
Q 025622 126 VD-YLQELLAIQQQGPRAIGFFGTRNMGF-MHQELIEILSYAL 166 (250)
Q Consensus 126 vD-~lqELaaIQq~g~rrIa~lGsRhv~~-~hq~LIEllsyAl 166 (250)
.| +++|..++.+.|-++|.+.|..|-+- --..+.|++....
T Consensus 117 ~EEI~~ea~~~~~~G~~~i~LvsGe~p~~~~~eyi~e~i~~I~ 159 (469)
T PRK09613 117 QEEIREEVKALEDMGHKRLALVAGEDPPNCDIEYILESIKTIY 159 (469)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 45 99999999999999999999999433 3455666665444
No 105
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=28.70 E-value=1.7e+02 Score=21.75 Aligned_cols=26 Identities=27% Similarity=0.472 Sum_probs=16.5
Q ss_pred HHhcCCceEEEec-ccccchhHHHHHH
Q 025622 135 IQQQGPRAIGFFG-TRNMGFMHQELIE 160 (250)
Q Consensus 135 IQq~g~rrIa~lG-sRhv~~~hq~LIE 160 (250)
+-++|.|+|+|+| ..+....+..+--
T Consensus 4 L~~~G~r~i~~i~~~~~~~~~~~r~~g 30 (160)
T PF13377_consen 4 LIERGHRRIAFIGGPPNSSVSRERLEG 30 (160)
T ss_dssp HHHTT-SSEEEEESSTTSHHHHHHHHH
T ss_pred HHHCCCCeEEEEecCCCChhHHHHHHH
Confidence 4578999999999 4445555544433
No 106
>PRK07324 transaminase; Validated
Probab=28.58 E-value=47 Score=29.60 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhCCceeec
Q 025622 156 QELIEILSYALVITKNHIYTS 176 (250)
Q Consensus 156 q~LIEllsyAlvl~gn~i~TS 176 (250)
++.+.++..++.-.|.+|++.
T Consensus 90 ~~al~~~~~~l~~~gd~Vl~~ 110 (373)
T PRK07324 90 TGANFLVLYALVEPGDHVISV 110 (373)
T ss_pred HHHHHHHHHHhCCCCCEEEEc
Confidence 445566666666566666653
No 107
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=28.52 E-value=1.9e+02 Score=25.46 Aligned_cols=49 Identities=14% Similarity=0.061 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhCCceeecCCCCchH-HHHHhhhhhcCCCceeEeeccccc
Q 025622 158 LIEILSYALVITKNHIYTSGASGTNA-AVIRGALRAERPDLLTVILPQSLK 207 (250)
Q Consensus 158 LIEllsyAlvl~gn~i~TSGA~GtNa-AvIRGalrae~P~lLTViLPQSL~ 207 (250)
+..++..|....-..|+|+|+++-|. +..--+-+. .==..+|++|....
T Consensus 40 ~~~~l~~a~~~g~~~vv~~ggs~GN~g~alA~~a~~-~G~~~~i~v~~~~~ 89 (307)
T cd06449 40 LEYLLPDALAKGADTLVTVGGIQSNHTRQVAAVAAK-LGLKCVLVQENWVP 89 (307)
T ss_pred HHHHHHHHHHcCCCEEEECCCchhHHHHHHHHHHHH-cCCeEEEEecCCCC
Confidence 55566667666567889987544444 333333333 44457888997655
No 108
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=28.50 E-value=65 Score=27.02 Aligned_cols=38 Identities=16% Similarity=0.235 Sum_probs=22.6
Q ss_pred ceEEEecccccchhHHHHHHHHHHHHHHhCCceeecCCCCchHHHHHh
Q 025622 141 RAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRG 188 (250)
Q Consensus 141 rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRG 188 (250)
.+||++|.-++|.. +|-+|+..||+++- -=+|...|..
T Consensus 1 M~I~ViGlGyvGl~-------~A~~lA~~G~~V~g---~D~~~~~v~~ 38 (185)
T PF03721_consen 1 MKIAVIGLGYVGLP-------LAAALAEKGHQVIG---VDIDEEKVEA 38 (185)
T ss_dssp -EEEEE--STTHHH-------HHHHHHHTTSEEEE---E-S-HHHHHH
T ss_pred CEEEEECCCcchHH-------HHHHHHhCCCEEEE---EeCChHHHHH
Confidence 37889999888875 56777888887763 2244444444
No 109
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=28.05 E-value=1.2e+02 Score=28.32 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=27.2
Q ss_pred ccccCCC---hh-HHHHHHHHHh-cCCceEEEecc-cccchhHHHHH
Q 025622 119 EFKPVPD---VD-YLQELLAIQQ-QGPRAIGFFGT-RNMGFMHQELI 159 (250)
Q Consensus 119 ~~~~~p~---vD-~lqELaaIQq-~g~rrIa~lGs-Rhv~~~hq~LI 159 (250)
+++++.= +| ++++|.+|++ .|+..|+++++ .+.+..+..+.
T Consensus 81 ~~~~isWdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~~~~~~~ 127 (461)
T cd02750 81 KWKRISWDEALELIADAIIDTIKKYGPDRVIGFSPIPAMSMVSYAAG 127 (461)
T ss_pred ceEEecHHHHHHHHHHHHHHHHHHhCCceEEeeccCCcccchhhHHH
Confidence 5666652 66 7788888865 59999999876 44544444443
No 110
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=27.94 E-value=74 Score=32.32 Aligned_cols=57 Identities=28% Similarity=0.427 Sum_probs=43.5
Q ss_pred EEEecccccchhHHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhhcCCCceeE-eeccc
Q 025622 143 IGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTV-ILPQS 205 (250)
Q Consensus 143 Ia~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~P~lLTV-iLPQS 205 (250)
|-|+-|.|- -=.|-++-+|.-...-||--|+-||-.-|+-|.||. +-++++| ++|--
T Consensus 95 V~Ivktd~~-----gqak~l~e~~~t~~Dii~VaGGDGT~~eVVTGi~Rr-r~~~~pv~~~P~G 152 (535)
T KOG4435|consen 95 VDIVKTDNQ-----GQAKALAEAVDTQEDIIYVAGGDGTIGEVVTGIFRR-RKAQLPVGFYPGG 152 (535)
T ss_pred EEEEecCcH-----HHHHHHHHHhccCCCeEEEecCCCcHHHhhHHHHhc-ccccCceeeccCc
Confidence 445555553 344666667777779999999999999999999999 6888887 55643
No 111
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=27.82 E-value=2e+02 Score=24.56 Aligned_cols=68 Identities=16% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHhcCCceEEEecccccchhHHHHHHHHHHHH--HHhCCceeecCCCCchHHHHHhhhhhcCCCceeEeec
Q 025622 132 LLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYAL--VITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILP 203 (250)
Q Consensus 132 LaaIQq~g~rrIa~lGsRhv~~~hq~LIEllsyAl--vl~gn~i~TSGA~GtNaAvIRGalrae~P~lLTViLP 203 (250)
...+.+.|.|+|+|+....-- -+...|.+..++ ...+...+..|.+-....+.+ +++.+||.+.+..+
T Consensus 126 ~~~~~~~g~~~vail~~~~~~--g~~~~~~~~~~~~~~v~~~~~~~~~~~d~~~~i~~--l~~~~pd~v~~~~~ 195 (333)
T cd06359 126 GKYAQDKGYKRVFLIAPNYQA--GKDALAGFKRTFKGEVVGEVYTKLGQLDFSAELAQ--IRAAKPDAVFVFLP 195 (333)
T ss_pred HHHHHHhCCCeEEEEecCchh--hHHHHHHHHHHhCceeeeeecCCCCCcchHHHHHH--HHhCCCCEEEEEcc
No 112
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=27.82 E-value=1.5e+02 Score=23.19 Aligned_cols=58 Identities=14% Similarity=0.216 Sum_probs=33.6
Q ss_pred eEEEecccccchhHHHHHHHHHHHHHHhCCceeecCCCCch---------HHHHHhhhhhcCCCceeEee
Q 025622 142 AIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTN---------AAVIRGALRAERPDLLTVIL 202 (250)
Q Consensus 142 rIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtN---------aAvIRGalrae~P~lLTViL 202 (250)
||.|+|.-+.-=+--.+.+.+ ....+.+++.-|..|+- .+-++..+...+|+++.+.+
T Consensus 1 ril~iGDS~~~g~~~~l~~~~---~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~pd~vii~~ 67 (200)
T cd01829 1 RVLVIGDSLAQGLAPGLLRAL---ADNPGIRVINRSKGSSGLVRPDFFDWPEKLKELIAEEKPDVVVVFL 67 (200)
T ss_pred CEEEEechHHHHHHHHHHHHh---ccCCCcEEEECccccccccCCCcCCHHHHHHHHHhcCCCCEEEEEe
Confidence 578888776532222333322 23446667776554432 13466667777999888773
No 113
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=27.47 E-value=60 Score=30.26 Aligned_cols=51 Identities=14% Similarity=0.083 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhCCceeecCCCCchH
Q 025622 128 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNA 183 (250)
Q Consensus 128 ~lqELaaIQq~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNa 183 (250)
+++++ +++.|-.. ...+.+|==+..|.|.+..++...-+-|+|||++|...
T Consensus 179 ~L~~~--L~~~G~~v---~~~~iVpDD~~~I~~al~~a~~~~~DlIITTGGtg~g~ 229 (312)
T PRK03604 179 LIVEG--LEEAGFEV---SHYTIIPDEPAEIAAAVAAWIAEGYALIITTGGTGLGP 229 (312)
T ss_pred HHHHH--HHHCCCEE---EEEEEcCCCHHHHHHHHHHhhhCCCCEEEECCCCCCCC
Confidence 55655 56667542 33445555677888888888766679999999999865
No 114
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=27.46 E-value=1.6e+02 Score=27.97 Aligned_cols=31 Identities=29% Similarity=0.576 Sum_probs=22.3
Q ss_pred ccccCC---Chh-HHHHHHHHHh-cCCceEEEeccc
Q 025622 119 EFKPVP---DVD-YLQELLAIQQ-QGPRAIGFFGTR 149 (250)
Q Consensus 119 ~~~~~p---~vD-~lqELaaIQq-~g~rrIa~lGsR 149 (250)
+++++. .+| +++.|.+|++ .|+..|+++++.
T Consensus 65 ~~~~isWdeAl~~ia~kl~~i~~~~G~~~i~~~~g~ 100 (539)
T cd02762 65 SFEEIDWDEAFDEIAERLRAIRARHGGDAVGVYGGN 100 (539)
T ss_pred ceeEeCHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 345544 267 7788888876 699999999654
No 115
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=27.46 E-value=59 Score=29.92 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=18.5
Q ss_pred HHHHHHHhcCC---ceEEEecccccchhHHHHH
Q 025622 130 QELLAIQQQGP---RAIGFFGTRNMGFMHQELI 159 (250)
Q Consensus 130 qELaaIQq~g~---rrIa~lGsRhv~~~hq~LI 159 (250)
.|+.++...+. +||+|+||--+|++...|.
T Consensus 108 lE~~~l~~~~~~~p~rVaFIGSGPLPlT~i~la 140 (276)
T PF03059_consen 108 LEYAALRIHAGDPPSRVAFIGSGPLPLTSIVLA 140 (276)
T ss_dssp HHHH-HTT--TT---EEEEE---SS-HHHHHHH
T ss_pred HHHHHHhhcCCcccceEEEEcCCCcchHHHHHH
Confidence 58888887655 6999999999999987765
No 116
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=27.41 E-value=87 Score=22.25 Aligned_cols=59 Identities=24% Similarity=0.228 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCCceEEEecc--------cccchhHHHHHHHHHH-HHHHhCCceeecCCCCchHHHH
Q 025622 128 YLQELLAIQQQGPRAIGFFGT--------RNMGFMHQELIEILSY-ALVITKNHIYTSGASGTNAAVI 186 (250)
Q Consensus 128 ~lqELaaIQq~g~rrIa~lGs--------Rhv~~~hq~LIEllsy-Alvl~gn~i~TSGA~GtNaAvI 186 (250)
|..||.++++..+.++-++-. -+.++++..++|-+.. .....+.++|..|..+...+|-
T Consensus 41 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~v~iCGp~~m~~~v~ 108 (109)
T PF00175_consen 41 FRDELEALAQEYPNRFHVVYVSSPDDGWDGFKGRVTDLLLEDLLPEKIDPDDTHVYICGPPPMMKAVR 108 (109)
T ss_dssp THHHHHHHHHHSTTCEEEEEETTTTSSTTSEESSHHHHHHHHHHHHHHCTTTEEEEEEEEHHHHHHHH
T ss_pred chhHHHHHHhhcccccccccccccccccCCceeehhHHHHHhhcccccCCCCCEEEEECCHHHHHHhc
Confidence 778888998888765433311 2355677766553333 4446788899998877666653
No 117
>PRK09064 5-aminolevulinate synthase; Validated
Probab=27.28 E-value=67 Score=28.59 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=18.3
Q ss_pred hhcCCCC---CCCChHHHhhhhhhhhhcc
Q 025622 223 VIEKPHN---DHLPLIEASRYTISFAFFL 248 (250)
Q Consensus 223 lvE~pen---D~LpL~eAS~lCns~~~~~ 248 (250)
++|.+.| +-.|+.+-..+|.....++
T Consensus 183 ~~~~v~s~~G~~~~l~~i~~l~~~~~~~l 211 (407)
T PRK09064 183 AFESVYSMDGDIAPIAEICDLADKYNALT 211 (407)
T ss_pred EEeCCCCCCccccCHHHHHHHHHHcCCEE
Confidence 4466555 3479999999998765444
No 118
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=26.89 E-value=79 Score=25.42 Aligned_cols=31 Identities=23% Similarity=0.082 Sum_probs=22.2
Q ss_pred chhHHHHHHHHHHHHHH-hCCceeecCCCCch
Q 025622 152 GFMHQELIEILSYALVI-TKNHIYTSGASGTN 182 (250)
Q Consensus 152 ~~~hq~LIEllsyAlvl-~gn~i~TSGA~GtN 182 (250)
+==...|.|.+..++.. .-..|+|||++|.-
T Consensus 43 ~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g 74 (152)
T cd00886 43 PDDKDEIREALIEWADEDGVDLILTTGGTGLA 74 (152)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEECCCcCCC
Confidence 33346777888777542 56789999999874
No 119
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=26.82 E-value=44 Score=30.71 Aligned_cols=29 Identities=28% Similarity=0.570 Sum_probs=22.2
Q ss_pred ccCCChhHHHH-HHHHHhcCCceEEEeccc
Q 025622 121 KPVPDVDYLQE-LLAIQQQGPRAIGFFGTR 149 (250)
Q Consensus 121 ~~~p~vD~lqE-LaaIQq~g~rrIa~lGsR 149 (250)
..+|=++++.| ..+|+..|-||+|+||||
T Consensus 97 ~~iPllhIidaTa~~ik~~g~kkvgLLgT~ 126 (230)
T COG1794 97 VGIPLLHIIDATAKAIKAAGAKKVGLLGTR 126 (230)
T ss_pred cCCCeehHHHHHHHHHHhcCCceeEEeecc
Confidence 34565665655 457888999999999998
No 120
>PRK03670 competence damage-inducible protein A; Provisional
Probab=26.80 E-value=64 Score=28.92 Aligned_cols=33 Identities=18% Similarity=0.183 Sum_probs=24.8
Q ss_pred cchhHHHHHHHHHHHHHHhCCceeecCCCCchH
Q 025622 151 MGFMHQELIEILSYALVITKNHIYTSGASGTNA 183 (250)
Q Consensus 151 v~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNa 183 (250)
+|==...|.+.+..++.....-|+|||+.|...
T Consensus 42 V~Dd~~~I~~~l~~a~~~~~DlVIttGGlGpt~ 74 (252)
T PRK03670 42 VGDDVEEIKSVVLEILSRKPEVLVISGGLGPTH 74 (252)
T ss_pred cCCCHHHHHHHHHHHhhCCCCEEEECCCccCCC
Confidence 444467788888887765568999999998653
No 121
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=26.74 E-value=1.5e+02 Score=30.33 Aligned_cols=54 Identities=19% Similarity=0.290 Sum_probs=34.3
Q ss_pred ccccCC---Chh-HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhCCceeecC
Q 025622 119 EFKPVP---DVD-YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSG 177 (250)
Q Consensus 119 ~~~~~p---~vD-~lqELaaIQq~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSG 177 (250)
+++++. .+| ++++|.+|+.+|++.|++++++... +.+...+.. ++.-+++.+.|
T Consensus 69 ~f~~ISWDEAld~IA~kL~~i~~~gp~~ia~~~g~~~~---~~l~~~f~~--~lGt~n~~~~~ 126 (679)
T cd02763 69 QFEEIEWEEAFSIATKRLKAARATDPKKFAFFTGRDQM---QALTGWFAG--QFGTPNYAAHG 126 (679)
T ss_pred ceEEeCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCccH---HHHHHHHHH--hcCCCCcCCCC
Confidence 455655 266 7899999999999999999666531 334333333 24444555444
No 122
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=26.51 E-value=36 Score=23.56 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=14.9
Q ss_pred HHHHHhhhhcCCCCCCCChHHHhhh
Q 025622 216 LLAKVKTVIEKPHNDHLPLIEASRY 240 (250)
Q Consensus 216 lLe~V~~lvE~penD~LpL~eAS~l 240 (250)
.++++..+|++=+|+++||+++-.+
T Consensus 4 ~~~~Le~Iv~~Le~~~~sLdes~~l 28 (53)
T PF02609_consen 4 AMERLEEIVEKLESGELSLDESLKL 28 (53)
T ss_dssp HHHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3445555566666789999988654
No 123
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=26.50 E-value=40 Score=32.06 Aligned_cols=18 Identities=56% Similarity=0.820 Sum_probs=12.6
Q ss_pred eeecCC--CCchHHHHHhhhh
Q 025622 173 IYTSGA--SGTNAAVIRGALR 191 (250)
Q Consensus 173 i~TSGA--~GtNaAvIRGalr 191 (250)
|+|||+ -|.||| |||+.|
T Consensus 7 IlTSGGdaPGmNa~-Iravvr 26 (347)
T COG0205 7 ILTSGGDAPGMNAV-IRAVVR 26 (347)
T ss_pred EEccCCCCccHHHH-HHHHHH
Confidence 689997 789973 455544
No 124
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=26.06 E-value=35 Score=30.76 Aligned_cols=26 Identities=15% Similarity=0.324 Sum_probs=10.3
Q ss_pred ceEEEe-cccccchhHHHHHHHHHHHH
Q 025622 141 RAIGFF-GTRNMGFMHQELIEILSYAL 166 (250)
Q Consensus 141 rrIa~l-GsRhv~~~hq~LIEllsyAl 166 (250)
|||||+ +..-+|-++--+-.+..||+
T Consensus 1 KrI~Il~sGG~apG~Na~i~~~v~~a~ 27 (282)
T PF00365_consen 1 KRIAILTSGGDAPGMNAAIRGVVRYAI 27 (282)
T ss_dssp EEEEEEEESS--TTHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCchhhhHHHHHHHHHHH
Confidence 344443 33344444444444444443
No 125
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=25.80 E-value=3.7e+02 Score=22.85 Aligned_cols=64 Identities=22% Similarity=0.183 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCCc-eEEEeccc---ccchhHHHHHHHHHH--HHHHhCCceeecCCC-CchHHHHHhhhh
Q 025622 128 YLQELLAIQQQGPR-AIGFFGTR---NMGFMHQELIEILSY--ALVITKNHIYTSGAS-GTNAAVIRGALR 191 (250)
Q Consensus 128 ~lqELaaIQq~g~r-rIa~lGsR---hv~~~hq~LIEllsy--Alvl~gn~i~TSGA~-GtNaAvIRGalr 191 (250)
|..||.+++..++. ++-+.=|| ..++++..|.|.+.. .+...+-++|+.|.. |.-.+|.+....
T Consensus 154 ~~~el~~~~~~~~~~~~~~~~s~~~~~~~~v~~~l~~~~~~~~~~~~~~~~vy~CGp~~~m~~~v~~~l~~ 224 (245)
T cd06200 154 CREELEAWQAAGHLARLDLAFSRDQAQKRYVQDRLRAAADELRAWVAEGAAIYVCGSLQGMAPGVDAVLDE 224 (245)
T ss_pred HHHHHHHHHHCCCcceEEEEEccCCCCCcchHHHHHHhHHHHHHHHHCCcEEEEECCchhhhHHHHHHHHH
Confidence 67888888876653 22222222 245666555544321 112234579999988 888887775543
No 126
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=25.72 E-value=4.4e+02 Score=22.80 Aligned_cols=95 Identities=17% Similarity=0.204 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcCCceEEEeccc--ccchhHHHHHHHHHHHHHHhCCce---eecCCCCchH--HHHHhhhhhcCCCceeE
Q 025622 128 YLQELLAIQQQGPRAIGFFGTR--NMGFMHQELIEILSYALVITKNHI---YTSGASGTNA--AVIRGALRAERPDLLTV 200 (250)
Q Consensus 128 ~lqELaaIQq~g~rrIa~lGsR--hv~~~hq~LIEllsyAlvl~gn~i---~TSGA~GtNa--AvIRGalrae~P~lLTV 200 (250)
+...+..+-+.|-.-|.+.||- -..+.-.+-.+++..+....++++ +.-|+..|.- .-+|-|-++ ..+-+-|
T Consensus 23 ~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~-G~d~v~~ 101 (284)
T cd00950 23 LERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKA-GADAALV 101 (284)
T ss_pred HHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHc-CCCEEEE
Confidence 5566666778999999999984 334455666666666665555553 3333333332 334556566 6777777
Q ss_pred eecccccCCChhHHHHHHHHhhhhcC
Q 025622 201 ILPQSLKKQPPESQELLAKVKTVIEK 226 (250)
Q Consensus 201 iLPQSL~kQp~Es~elLe~V~~lvE~ 226 (250)
+-|-...- ...++++-...+.|.
T Consensus 102 ~~P~~~~~---~~~~l~~~~~~ia~~ 124 (284)
T cd00950 102 VTPYYNKP---SQEGLYAHFKAIAEA 124 (284)
T ss_pred cccccCCC---CHHHHHHHHHHHHhc
Confidence 76755432 235555555566664
No 127
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=25.66 E-value=1.7e+02 Score=27.00 Aligned_cols=75 Identities=25% Similarity=0.301 Sum_probs=44.9
Q ss_pred HHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhCCceee---cCCCCchHHHHHhhhhhcCCCceeEeecccccC
Q 025622 132 LLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYT---SGASGTNAAVIRGALRAERPDLLTVILPQSLKK 208 (250)
Q Consensus 132 LaaIQq~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~T---SGA~GtNaAvIRGalrae~P~lLTViLPQSL~k 208 (250)
+++|. . ++.|.|+|||.. .|.+|+-.+. . +|-+-++ .|++=||... ... ..|++|-|+
T Consensus 65 i~~i~-~-~~~Il~Vstr~~---~~~~V~k~A~--~-tg~~~i~~Rw~pGtlTN~~~--~~f--~~P~llIV~------- 125 (249)
T PTZ00254 65 IAAIE-N-PADVVVVSSRPY---GQRAVLKFAQ--Y-TGASAIAGRFTPGTFTNQIQ--KKF--MEPRLLIVT------- 125 (249)
T ss_pred HHHHh-C-CCcEEEEEcCHH---HHHHHHHHHH--H-hCCeEECCcccCCCCCCccc--ccc--CCCCEEEEe-------
Confidence 44553 3 677999999973 3556655433 2 2333322 4677788732 222 256665543
Q ss_pred CChhHHHHHHHHhhhhcCCCCCCCChHHHhhhhh
Q 025622 209 QPPESQELLAKVKTVIEKPHNDHLPLIEASRYTI 242 (250)
Q Consensus 209 Qp~Es~elLe~V~~lvE~penD~LpL~eAS~lCn 242 (250)
.|..|+-.+-||+.+.+
T Consensus 126 -----------------Dp~~d~qAI~EA~~lnI 142 (249)
T PTZ00254 126 -----------------DPRTDHQAIREASYVNI 142 (249)
T ss_pred -----------------CCCcchHHHHHHHHhCC
Confidence 57888888888887654
No 128
>COG1669 Predicted nucleotidyltransferases [General function prediction only]
Probab=25.58 E-value=56 Score=26.42 Aligned_cols=16 Identities=19% Similarity=0.573 Sum_probs=13.3
Q ss_pred HHHH-hcCCceEEEecc
Q 025622 133 LAIQ-QQGPRAIGFFGT 148 (250)
Q Consensus 133 aaIQ-q~g~rrIa~lGs 148 (250)
..++ +.|-++||+|||
T Consensus 16 ~~l~~k~gv~~~~vFGS 32 (97)
T COG1669 16 PELKEKYGVKRVAVFGS 32 (97)
T ss_pred HHHHHHhCCceEEEeee
Confidence 3456 789999999998
No 129
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=25.35 E-value=1.8e+02 Score=26.84 Aligned_cols=50 Identities=22% Similarity=0.270 Sum_probs=37.9
Q ss_pred CChhHHHHHHHHHhc-------CCceEEEecccccchhHHHHHHHHHHHHHHhCCceee
Q 025622 124 PDVDYLQELLAIQQQ-------GPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYT 175 (250)
Q Consensus 124 p~vD~lqELaaIQq~-------g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~T 175 (250)
=++|.-+|+..++.. ..+.|+|.|..+.|=+ .|||=+-..|...|-++.+
T Consensus 182 ~nINTpeDl~~l~~~~~~~~~~~~~~~~~~g~~~~GKt--t~~~~l~~~l~~~g~~v~~ 238 (366)
T PRK14489 182 FNVNTPEDLEQLRAIPDGTTTGAPPLLGVVGYSGTGKT--TLLEKLIPELIARGYRIGL 238 (366)
T ss_pred ccCCCHHHHHHHhhhhhcccCCCccEEEEecCCCCCHH--HHHHHHHHHHHHcCCEEEE
Confidence 357788888888776 5789999999999977 4677777777776655543
No 130
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=24.98 E-value=95 Score=26.46 Aligned_cols=60 Identities=18% Similarity=0.194 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCCc-eEEEeccc-------ccchhHHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhh
Q 025622 128 YLQELLAIQQQGPR-AIGFFGTR-------NMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALR 191 (250)
Q Consensus 128 ~lqELaaIQq~g~r-rIa~lGsR-------hv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalr 191 (250)
|..||.+++++ ++ ++-++-+| +.++++..|.|+. ...++.++|..|..+...++.+-..+
T Consensus 144 ~~~~L~~l~~~-~~~~~~~~~s~~~~~~~~~~g~v~~~l~~~~---~~~~~~~vyicGp~~mv~~~~~~L~~ 211 (253)
T cd06221 144 FKEELKEWAKR-SDVEVILTVDRAEEGWTGNVGLVTDLLPELT---LDPDNTVAIVCGPPIMMRFVAKELLK 211 (253)
T ss_pred hHHHHHHHHhc-CCeEEEEEeCCCCCCccCCccccchhHHhcC---CCcCCcEEEEECCHHHHHHHHHHHHH
Confidence 56777777765 22 23233332 2345555444332 22356677888877777666555543
No 131
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=24.81 E-value=3e+02 Score=27.37 Aligned_cols=60 Identities=18% Similarity=0.251 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCCce-EEEeccc---ccchhHHHHHHHHH--HHHHHhCCceeecC-CCCchHHHHH
Q 025622 128 YLQELLAIQQQGPRA-IGFFGTR---NMGFMHQELIEILS--YALVITKNHIYTSG-ASGTNAAVIR 187 (250)
Q Consensus 128 ~lqELaaIQq~g~rr-Ia~lGsR---hv~~~hq~LIElls--yAlvl~gn~i~TSG-A~GtNaAvIR 187 (250)
|..||...++.|.-. +-.--|| +-++++..|.|-.. +.+...|-++|..| +.+...+|.+
T Consensus 496 y~~El~~~~~~~~l~~l~~afSRd~~~k~yVqd~l~e~~~~~~~~l~~~a~vYvCG~~~~M~~~V~~ 562 (597)
T TIGR01931 496 YQVEWQNYLKKGVLTKMDLAFSRDQAEKIYVQHRIREQGAELWQWLQEGAHIYVCGDAKKMAKDVHQ 562 (597)
T ss_pred HHHHHHHHHHcCCCceeEEEEecCCCCCccHHHHHHHhHHHHHHHHhCCcEEEEECCCccccHHHHH
Confidence 667888777777532 3232344 44566665554332 22334677888888 6666554443
No 132
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=24.49 E-value=2.6e+02 Score=25.19 Aligned_cols=50 Identities=12% Similarity=0.016 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhhcCCCceeEeeccc
Q 025622 156 QELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQS 205 (250)
Q Consensus 156 q~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~P~lLTViLPQS 205 (250)
..+..++..|....--.|+|+|+++-|.++-=.+.-+..==..+|++|..
T Consensus 52 R~~~~~l~~a~~~G~~~vvs~ggs~gN~g~alA~~a~~~Gl~~~iv~~~~ 101 (337)
T TIGR01274 52 RKLEYLIPDAQAQGCTTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENW 101 (337)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcchHHHHHHHHHHHcCCcEEEEeccC
Confidence 34566666676666666677766555543333333222223345666653
No 133
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=24.37 E-value=1.6e+02 Score=26.09 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=22.7
Q ss_pred CCceeecCCCCchHHHHHhhhhh----cCCCceeEeecc
Q 025622 170 KNHIYTSGASGTNAAVIRGALRA----ERPDLLTVILPQ 204 (250)
Q Consensus 170 gn~i~TSGA~GtNaAvIRGalra----e~P~lLTViLPQ 204 (250)
++-++|+|++-.|.++||-|... .|++.-.||.+.
T Consensus 89 ~~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~ 127 (389)
T PRK01278 89 DKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFE 127 (389)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEEC
Confidence 46788888888888888877432 234444555543
No 134
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=24.33 E-value=71 Score=26.13 Aligned_cols=58 Identities=17% Similarity=0.110 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHhcCCceEEEecccccchhHHHHHHHHH------------------HHHHHhCCceeecCCCCchHH
Q 025622 126 VDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILS------------------YALVITKNHIYTSGASGTNAA 184 (250)
Q Consensus 126 vD~lqELaaIQq~g~rrIa~lGsRhv~~~hq~LIElls------------------yAlvl~gn~i~TSGA~GtNaA 184 (250)
.|+++=|...+ +..++||++|.+|+-.--..+-+++. .-+...|-.++--|+..++.|
T Consensus 64 ~Dil~al~~a~-~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~~~~~~A 139 (176)
T PF06506_consen 64 FDILRALAKAK-KYGPKIAVVGYPNIIPGLESIEELLGVDIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGGVVCRLA 139 (176)
T ss_dssp HHHHHHHHHCC-CCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHTT--EEEESHHHHHHH
T ss_pred hHHHHHHHHHH-hcCCcEEEEecccccHHHHHHHHHhCCceEEEEECCHHHHHHHHHHHHHcCCcEEECCHHHHHHH
Confidence 58888887777 45589999999998764455544442 234456777777776555554
No 135
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=24.25 E-value=2e+02 Score=21.80 Aligned_cols=13 Identities=15% Similarity=-0.003 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 025622 155 HQELIEILSYALV 167 (250)
Q Consensus 155 hq~LIEllsyAlv 167 (250)
..++++-+...+.
T Consensus 49 ~~~~~~~l~~~~~ 61 (177)
T cd01822 49 TAGGLARLPALLA 61 (177)
T ss_pred cHHHHHHHHHHHH
Confidence 3445554544443
No 136
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=24.24 E-value=79 Score=28.05 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=14.8
Q ss_pred hhcCCCCC---CCC----hHHHhhhhhhhh
Q 025622 223 VIEKPHND---HLP----LIEASRYTISFA 245 (250)
Q Consensus 223 lvE~penD---~Lp----L~eAS~lCns~~ 245 (250)
+||-+.|. .+| +.+-.++|...-
T Consensus 188 iiep~~~~~G~~~~~~~~l~~l~~l~~~~~ 217 (398)
T PRK03244 188 FLEPIQGEAGVVPPPAGYLAAAREITDRHG 217 (398)
T ss_pred EEecccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 45555443 466 778889998653
No 137
>PRK07179 hypothetical protein; Provisional
Probab=24.19 E-value=69 Score=28.66 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=18.1
Q ss_pred hhcCCC---CCCCChHHHhhhhhhhhhcc
Q 025622 223 VIEKPH---NDHLPLIEASRYTISFAFFL 248 (250)
Q Consensus 223 lvE~pe---nD~LpL~eAS~lCns~~~~~ 248 (250)
+||.+. .+-.|+.+-.++|.....++
T Consensus 186 ~v~~v~n~tG~i~pl~~I~~l~~~~~~~l 214 (407)
T PRK07179 186 VVDSVYSTTGTIAPLADIVDIAEEFGCVL 214 (407)
T ss_pred EECCCCCCCCccccHHHHHHHHHHcCCEE
Confidence 356544 57889999999998765443
No 138
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=24.17 E-value=1.6e+02 Score=26.90 Aligned_cols=38 Identities=5% Similarity=0.129 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHH
Q 025622 128 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYA 165 (250)
Q Consensus 128 ~lqELaaIQq~g~rrIa~lGsRhv~~~hq~LIEllsyA 165 (250)
+++++.++.+.|-++|.+.|..|...--..+.|++.+-
T Consensus 84 I~~~a~~~~~~G~~~v~l~~G~~p~~~~~~~~e~i~~I 121 (351)
T TIGR03700 84 IVARVKEAYAPGATEVHIVGGLHPNLPFEWYLDMIRTL 121 (351)
T ss_pred HHHHHHHHHHCCCcEEEEecCCCCCCCHHHHHHHHHHH
Confidence 77777777778888888887776543334555555543
No 139
>PF13884 Peptidase_S74: Chaperone of endosialidase; PDB: 3GUD_A.
Probab=24.16 E-value=44 Score=22.81 Aligned_cols=17 Identities=35% Similarity=0.679 Sum_probs=10.8
Q ss_pred ecccccchhHHHHHHHH
Q 025622 146 FGTRNMGFMHQELIEIL 162 (250)
Q Consensus 146 lGsRhv~~~hq~LIEll 162 (250)
-+.+|+||+.|++.|++
T Consensus 40 ~~~~~~G~IAQev~~v~ 56 (58)
T PF13884_consen 40 EDRRHIGFIAQEVQEVF 56 (58)
T ss_dssp GS--EEE--HHHHHHHH
T ss_pred CCceEEEEeHHHHHHhC
Confidence 35589999999999975
No 140
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=24.13 E-value=3.3e+02 Score=24.00 Aligned_cols=64 Identities=16% Similarity=0.118 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCCc-eEEEeccc--ccchhHHHHHHHHH--HHHHHhCCceeecCCCCchHHHHHhhhh
Q 025622 128 YLQELLAIQQQGPR-AIGFFGTR--NMGFMHQELIEILS--YALVITKNHIYTSGASGTNAAVIRGALR 191 (250)
Q Consensus 128 ~lqELaaIQq~g~r-rIa~lGsR--hv~~~hq~LIElls--yAlvl~gn~i~TSGA~GtNaAvIRGalr 191 (250)
|..||..++++++. ++-+.-|| ..+++...+.+... ....-.+-.+|..|..+...+|.+....
T Consensus 198 ~~~eL~~l~~~~~~~~~~~~~s~~~~~g~v~~~l~~~~~~l~~~~~~~~~vyiCGp~~M~~~v~~~L~~ 266 (289)
T cd06201 198 YEDELDQYLADGRLTQLHTAFSRTPDGAYVQDRLRADAERLRRLIEDGAQIMVCGSRAMAQGVAAVLEE 266 (289)
T ss_pred HHHHHHHHHHcCCCceEEEEECCCCCcccchhHHHHhHHHHHHHHHCCcEEEEECCHHHHHHHHHHHHH
Confidence 67899999888773 34333455 34566544433221 1122356789999998888777655443
No 141
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=24.11 E-value=3.1e+02 Score=24.81 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=52.6
Q ss_pred HHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhhcCCCceeEe
Q 025622 130 QELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVI 201 (250)
Q Consensus 130 qELaaIQq~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~P~lLTVi 201 (250)
+....+++.|-.-+.+.-+.. -+.+|+...|.....-.|+-.|+=||=-.||-|..+.++|. |.||
T Consensus 24 ~~~~~l~~~g~~~~~~~t~~~-----g~a~~~a~~a~~~~~D~via~GGDGTv~evingl~~~~~~~-Lgil 89 (301)
T COG1597 24 EVEELLEEAGHELSVRVTEEA-----GDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLAGTDDPP-LGIL 89 (301)
T ss_pred HHHHHHHhcCCeEEEEEeecC-----ccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHhcCCCCc-eEEe
Confidence 334456777877777776655 46788888888888999999999999999999999997776 6554
No 142
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.94 E-value=77 Score=29.64 Aligned_cols=19 Identities=58% Similarity=0.770 Sum_probs=14.6
Q ss_pred eeecCCCCc-------------hHHHHHhhhh
Q 025622 173 IYTSGASGT-------------NAAVIRGALR 191 (250)
Q Consensus 173 i~TSGA~Gt-------------NaAvIRGalr 191 (250)
+||||.||. |++.+...+.
T Consensus 177 ~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~ 208 (534)
T COG0318 177 LYTSGTTGLPKGVVLTHRNLLANAAGIAAALG 208 (534)
T ss_pred EeCCCCCCCCCEeEEecHhHHHHHHHHHHHhc
Confidence 569999995 4677777777
No 143
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=23.91 E-value=3.2e+02 Score=20.59 Aligned_cols=82 Identities=15% Similarity=0.111 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcC-----CceEEEecccccchhHHHHHHHHHHHHHHhC---CceeecCCC--CchHHHHHhhhhhcCCCc
Q 025622 128 YLQELLAIQQQG-----PRAIGFFGTRNMGFMHQELIEILSYALVITK---NHIYTSGAS--GTNAAVIRGALRAERPDL 197 (250)
Q Consensus 128 ~lqELaaIQq~g-----~rrIa~lGsRhv~~~hq~LIEllsyAlvl~g---n~i~TSGA~--GtNaAvIRGalrae~P~l 197 (250)
+.+|+.++-+.| .+.|.|.|.-..-.-+..+.+++.++....+ +..++.... ..+...|+-..++ ..+
T Consensus 35 i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tn~~~~~~~~~~~l~~~-~~~- 112 (216)
T smart00729 35 LVREIELLAEKGEKEILVGTVFIGGGTPTLLSPEQLEELLEAIREILGLADDVEITIETRPGTLTEELLEALKEA-GVN- 112 (216)
T ss_pred HHHHHHHHHhcccCCcceeEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCcccCCHHHHHHHHHc-CCC-
Confidence 667776664444 3566777766544444468999999888764 222332222 3456666666655 444
Q ss_pred eeEeecccccCCChhHH
Q 025622 198 LTVILPQSLKKQPPESQ 214 (250)
Q Consensus 198 LTViLPQSL~kQp~Es~ 214 (250)
+|.+ |++--.++..
T Consensus 113 -~i~i--sl~~~~~~~~ 126 (216)
T smart00729 113 -RVSL--GVQSGSDEVL 126 (216)
T ss_pred -eEEE--ecccCCHHHH
Confidence 3433 4444444433
No 144
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=23.73 E-value=2.4e+02 Score=24.40 Aligned_cols=58 Identities=24% Similarity=0.418 Sum_probs=32.5
Q ss_pred ccccCCC---hh-HHHHHHHHHh-cCCceEEEecccccchhHHHHHHHHHHHHHHhCCceeecCC
Q 025622 119 EFKPVPD---VD-YLQELLAIQQ-QGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGA 178 (250)
Q Consensus 119 ~~~~~p~---vD-~lqELaaIQq-~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA 178 (250)
+++++.= +| +++.|..+.+ .|++.|+++++......-..++.-+ +..+.++.+.+.+.
T Consensus 67 ~~~~isWdeAl~~ia~~l~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~ 129 (374)
T cd00368 67 KFVPISWDEALDEIAEKLKEIREKYGPDAIAFYGGGGASNEEAYLLQKL--LRALGSNNVDSHAR 129 (374)
T ss_pred CeEEecHHHHHHHHHHHHHHHHHHhCCceEEEEecCCCCcHHHHHHHHH--HHhcCCCccCCCCc
Confidence 4555542 45 5566666655 5899999887766544333332221 23455566655544
No 145
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=23.68 E-value=2.9e+02 Score=24.59 Aligned_cols=73 Identities=22% Similarity=0.296 Sum_probs=44.8
Q ss_pred HhcCCceEEEecccccchhHHHHHHHHHHHHHHhCCceeec---CCCCchHHHHHhhhhhcCCCceeEeecccccCCChh
Q 025622 136 QQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTS---GASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPE 212 (250)
Q Consensus 136 Qq~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TS---GA~GtNaAvIRGalrae~P~lLTViLPQSL~kQp~E 212 (250)
..-.+++|-|.|||.. .+.+|+-.|.. +|-+-++. |++=||.-. +.- -.|+++-|+
T Consensus 63 ~~~~~~~ILfVgTk~~---~~~~v~k~A~~---~g~~~v~~RWlgG~LTN~~~-~~~---~~Pdliiv~----------- 121 (204)
T PRK04020 63 SRYEPEKILVVSSRQY---GQKPVQKFAEV---VGAKAITGRFIPGTLTNPSL-KGY---IEPDVVVVT----------- 121 (204)
T ss_pred HHhcCCeEEEEeCCHH---HHHHHHHHHHH---hCCeeecCccCCCcCcCcch-hcc---CCCCEEEEE-----------
Confidence 3335789999999983 45665544433 34444444 888899863 111 156665554
Q ss_pred HHHHHHHHhhhhcCCCCCCCChHHHhhhhh
Q 025622 213 SQELLAKVKTVIEKPHNDHLPLIEASRYTI 242 (250)
Q Consensus 213 s~elLe~V~~lvE~penD~LpL~eAS~lCn 242 (250)
.|.+|+..+.||+++.+
T Consensus 122 -------------dp~~~~~AI~EA~kl~I 138 (204)
T PRK04020 122 -------------DPRGDAQAVKEAIEVGI 138 (204)
T ss_pred -------------CCcccHHHHHHHHHhCC
Confidence 46677777777776643
No 146
>KOG2174 consensus Leptin receptor gene-related protein [Signal transduction mechanisms]
Probab=23.49 E-value=45 Score=28.59 Aligned_cols=44 Identities=23% Similarity=0.163 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCceEEEecccccc--hhHHHHHHHHHHHHHHhCCceee
Q 025622 128 YLQELLAIQQQGPRAIGFFGTRNMG--FMHQELIEILSYALVITKNHIYT 175 (250)
Q Consensus 128 ~lqELaaIQq~g~rrIa~lGsRhv~--~~hq~LIEllsyAlvl~gn~i~T 175 (250)
-.+|||.---.|. . .|+=-.| +.|-++||-.+-+|+++||.|+=
T Consensus 65 ~~idlA~FlTg~~-v---vs~falPiVl~ha~lI~~gAc~l~~tg~~iIF 110 (131)
T KOG2174|consen 65 ACIDLAKFLTGAI-V---VSAFALPIVLAHAGLIGWGACALVLTGNSIIF 110 (131)
T ss_pred HHHHHHHHHhcch-h---hhhhhhHHHHHHhhHhhhhhhhhhhcCCchhH
Confidence 5667766544332 2 2333345 45999999999999999988763
No 147
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=23.21 E-value=1.2e+02 Score=26.56 Aligned_cols=46 Identities=22% Similarity=0.196 Sum_probs=26.3
Q ss_pred ecccccc---hhHHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhh
Q 025622 146 FGTRNMG---FMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRA 192 (250)
Q Consensus 146 lGsRhv~---~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalra 192 (250)
=++||+. -.|.+|-|-++.-+- ..+-|+|+|++..|.+++.+.++.
T Consensus 73 ~~s~~~~G~~~~~~~le~~ia~~~g-~~~~ii~~~~~~a~~~~~~~l~~~ 121 (393)
T TIGR01822 73 SSVRFICGTQDIHKELEAKIAAFLG-TEDTILYASCFDANGGLFETLLGA 121 (393)
T ss_pred CCcCcccCChHHHHHHHHHHHHHhC-CCcEEEECchHHHHHHHHHHhCCC
Confidence 3455442 235555555553333 346777777777777777665543
No 148
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=23.05 E-value=4.5e+02 Score=21.94 Aligned_cols=71 Identities=14% Similarity=0.215 Sum_probs=43.3
Q ss_pred HHHHHHH--HHhcCCceEEEecccccchhHHHHHHHHHHHHHHhCCcee---ecCCCCchHHHHHhhhhhcCCCceeE
Q 025622 128 YLQELLA--IQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIY---TSGASGTNAAVIRGALRAERPDLLTV 200 (250)
Q Consensus 128 ~lqELaa--IQq~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~---TSGA~GtNaAvIRGalrae~P~lLTV 200 (250)
.+.-++. ..+.|.++|+++... .++- +.+.+.+..++-..|-.++ +-....++-..+--.|.+.+|+.+-+
T Consensus 121 ~~~~~~~~~~~~~g~~~v~iv~~~-~~~g-~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~~~~l~~~~~d~v~~ 196 (343)
T PF13458_consen 121 QAAALAEYLAKKLGAKKVAIVYPD-DPYG-RSLAEAFRKALEAAGGKVVGEIRYPPGDTDFSALVQQLKSAGPDVVVL 196 (343)
T ss_dssp HHHHHHHHHHHTTTTSEEEEEEES-SHHH-HHHHHHHHHHHHHTTCEEEEEEEE-TTSSHHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHHHcCCcEEEEEecC-chhh-hHHHHHHHHHHhhcCceeccceecccccccchHHHHHHhhcCCCEEEE
Confidence 4444444 245789999999854 6665 6778888888887776663 22333344443334455559997433
No 149
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=23.02 E-value=70 Score=27.63 Aligned_cols=45 Identities=13% Similarity=0.065 Sum_probs=23.0
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhCCceeecC
Q 025622 128 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSG 177 (250)
Q Consensus 128 ~lqELaaIQq~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSG 177 (250)
+-+++++.-.-.+..|.+.|+ --+++|.++..++...|.+|+++-
T Consensus 74 lr~~ia~~~~~~~~~i~~~~~-----Ga~~~i~~~~~~~~~~gd~vlv~~ 118 (361)
T PRK00950 74 LREALSKYTGVPVENIIVGGD-----GMDEVIDTLMRTFIDPGDEVIIPT 118 (361)
T ss_pred HHHHHHHHhCCCHHHEEEeCC-----CHHHHHHHHHHHhcCCCCEEEEcC
Confidence 445555544333344544331 124566666666655666666544
No 150
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=23.02 E-value=2.8e+02 Score=24.94 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhCCceeecCCCCchHH
Q 025622 155 HQELIEILSYALVITKNHIYTSGASGTNAA 184 (250)
Q Consensus 155 hq~LIEllsyAlvl~gn~i~TSGA~GtNaA 184 (250)
-..+..++..|....-..|+|+|+++-|.+
T Consensus 52 ~R~~~~~l~~a~~~G~~~vvs~G~s~GN~g 81 (337)
T PRK12390 52 TRKLEYLVPDALAQGADTLVSIGGVQSNHT 81 (337)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccHHH
Confidence 345667777777777777788876655543
No 151
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown.
Probab=23.01 E-value=5.5e+02 Score=23.85 Aligned_cols=63 Identities=19% Similarity=0.301 Sum_probs=36.2
Q ss_pred cccCCC-hh-HHHHHHHHHhcCCceEEEec-ccccchhHHHHHHHHHHHHHHhCCceeecCCC--CchHHHHH
Q 025622 120 FKPVPD-VD-YLQELLAIQQQGPRAIGFFG-TRNMGFMHQELIEILSYALVITKNHIYTSGAS--GTNAAVIR 187 (250)
Q Consensus 120 ~~~~p~-vD-~lqELaaIQq~g~rrIa~lG-sRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~--GtNaAvIR 187 (250)
|..-|+ +. .++-|... .+.|+|++|| ..+-...|..+++.++... -+.|++.|.. |.+...|+
T Consensus 338 y~~NP~s~~aal~~l~~~--~~~r~i~VlGlg~~~~~~~~~~~~~~~~~~---~d~vi~~g~~~~~~~~~~~~ 405 (464)
T TIGR01085 338 YAHTPDALEKALRTLRKH--KDGRLIVVFGCGGDRDRGKRPLMGAIAEQL---ADLVILTSDNPRGEDPEQII 405 (464)
T ss_pred CCCCHHHHHHHHHHHHhh--CCCcEEEEECCCCCCCcchhHHHHHHHHhc---CCEEEEeCCCcCCCCHHHHH
Confidence 766665 44 33333221 2458999999 4444567888887765443 3567665542 44444444
No 152
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=22.81 E-value=2e+02 Score=23.04 Aligned_cols=34 Identities=18% Similarity=0.079 Sum_probs=22.2
Q ss_pred hcCCceEEEecccccchhHHHHHHHHHHHHHHhC
Q 025622 137 QQGPRAIGFFGTRNMGFMHQELIEILSYALVITK 170 (250)
Q Consensus 137 q~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~g 170 (250)
++|.|+|+++|...--..++.-++=+..++...|
T Consensus 113 ~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~ 146 (264)
T cd06274 113 AAPPEEVLFLGGLPELSPSRERLAGFRQALADAG 146 (264)
T ss_pred HCCCCcEEEEeCCCcccchHHHHHHHHHHHHHcC
Confidence 4899999999766543345555565566665544
No 153
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=22.66 E-value=1.2e+02 Score=25.80 Aligned_cols=23 Identities=0% Similarity=-0.179 Sum_probs=15.4
Q ss_pred hcCCCCCCCChHHHhhhhhhhhh
Q 025622 224 IEKPHNDHLPLIEASRYTISFAF 246 (250)
Q Consensus 224 vE~penD~LpL~eAS~lCns~~~ 246 (250)
+.++...-.++.+-..+|.....
T Consensus 112 ~~~~~G~~~~~~~i~~l~~~~~i 134 (352)
T cd00616 112 PVHLYGNPADMDAIMAIAKRHGL 134 (352)
T ss_pred EECCCCCcCCHHHHHHHHHHcCC
Confidence 45565566778888888876543
No 154
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.63 E-value=89 Score=23.73 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=21.5
Q ss_pred hHHHHHHHHhhhhcCCCCCCCChHHHhh
Q 025622 212 ESQELLAKVKTVIEKPHNDHLPLIEASR 239 (250)
Q Consensus 212 Es~elLe~V~~lvE~penD~LpL~eAS~ 239 (250)
---+.++++..+|.+=++.++||.++-.
T Consensus 7 sfEe~l~~LE~IV~~LE~~~l~Leesl~ 34 (75)
T PRK14064 7 TFEEAIAELETIVEALENGSASLEDSLD 34 (75)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 3456677777778888889999999854
No 155
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=22.44 E-value=5.4e+02 Score=22.70 Aligned_cols=89 Identities=18% Similarity=0.202 Sum_probs=51.4
Q ss_pred ecccccCCChh--HHHH-HHHHHhcCCceEEEecc--cccchhHHHHHHHHHHHHHHhCCceeecCCCCchHHHH--Hhh
Q 025622 117 VSEFKPVPDVD--YLQE-LLAIQQQGPRAIGFFGT--RNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVI--RGA 189 (250)
Q Consensus 117 ~~~~~~~p~vD--~lqE-LaaIQq~g~rrIa~lGs--Rhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvI--RGa 189 (250)
+.+|.. =++| -+.+ +.-+-+.|-.-|.++|| .-.-+..++-.+++..+....+.-|+-.|+..|.-|+- |-|
T Consensus 9 ~TPf~~-g~iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~vi~gvg~~~~~~ai~~a~~a 87 (279)
T cd00953 9 ITPFTG-NKIDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDKVIFQVGSLNLEESIELARAA 87 (279)
T ss_pred ecCcCC-CCcCHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCCEEEEeCcCCHHHHHHHHHHH
Confidence 455554 3455 3444 44456789999999998 34556677777777777665554444445444443332 333
Q ss_pred hhhcCCCceeEeeccccc
Q 025622 190 LRAERPDLLTVILPQSLK 207 (250)
Q Consensus 190 lrae~P~lLTViLPQSL~ 207 (250)
-++ ..+-+-|+-|=...
T Consensus 88 ~~~-Gad~v~v~~P~y~~ 104 (279)
T cd00953 88 KSF-GIYAIASLPPYYFP 104 (279)
T ss_pred HHc-CCCEEEEeCCcCCC
Confidence 333 44656555565443
No 156
>PRK07777 aminotransferase; Validated
Probab=22.42 E-value=60 Score=28.69 Aligned_cols=18 Identities=17% Similarity=0.146 Sum_probs=7.9
Q ss_pred HHHHHHHHHHhCCceeec
Q 025622 159 IEILSYALVITKNHIYTS 176 (250)
Q Consensus 159 IEllsyAlvl~gn~i~TS 176 (250)
++++.+++...|.+|++.
T Consensus 98 l~~~~~~~~~~gd~vli~ 115 (387)
T PRK07777 98 IAAAVLGLVEPGDEVLLI 115 (387)
T ss_pred HHHHHHHhcCCCCEEEEe
Confidence 344444444444444443
No 157
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=22.38 E-value=1.1e+02 Score=26.37 Aligned_cols=22 Identities=14% Similarity=-0.007 Sum_probs=13.8
Q ss_pred cCCCCCCCChHHHhhhhhhhhh
Q 025622 225 EKPHNDHLPLIEASRYTISFAF 246 (250)
Q Consensus 225 E~penD~LpL~eAS~lCns~~~ 246 (250)
.+|...-+|+.+-.++|.....
T Consensus 134 ~~~~G~~~~~~~i~~~a~~~~~ 155 (356)
T cd06451 134 ETSTGVLNPLEGIGALAKKHDA 155 (356)
T ss_pred CCCcccccCHHHHHHHHHhcCC
Confidence 3445566777777777765443
No 158
>PRK12583 acyl-CoA synthetase; Provisional
Probab=22.37 E-value=91 Score=28.05 Aligned_cols=10 Identities=50% Similarity=0.717 Sum_probs=8.9
Q ss_pred ceeecCCCCc
Q 025622 172 HIYTSGASGT 181 (250)
Q Consensus 172 ~i~TSGA~Gt 181 (250)
.++|||.||+
T Consensus 206 i~~TSGsTG~ 215 (558)
T PRK12583 206 IQYTSGTTGF 215 (558)
T ss_pred EEECCCCCCC
Confidence 4899999997
No 159
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=22.24 E-value=4.1e+02 Score=21.15 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=16.7
Q ss_pred hcCCceEEEeccccc-chhHHHHHHHHHHHH
Q 025622 137 QQGPRAIGFFGTRNM-GFMHQELIEILSYAL 166 (250)
Q Consensus 137 q~g~rrIa~lGsRhv-~~~hq~LIEllsyAl 166 (250)
++|.|+|+++|+..- -..+..-.+=...++
T Consensus 113 ~~g~~~i~~l~~~~~~~~~~~~r~~gf~~~~ 143 (268)
T cd06298 113 KNGHKKIAFISGPLEDSINGDERLAGYKEAL 143 (268)
T ss_pred HcCCceEEEEeCCcccccchhHHHHHHHHHH
Confidence 369999999975432 223434343333344
No 160
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=22.18 E-value=47 Score=32.23 Aligned_cols=18 Identities=17% Similarity=0.434 Sum_probs=14.1
Q ss_pred eeecCC--CCchHHHHHhhhh
Q 025622 173 IYTSGA--SGTNAAVIRGALR 191 (250)
Q Consensus 173 i~TSGA--~GtNaAvIRGalr 191 (250)
|+|||+ .|.|| +|||+.+
T Consensus 8 IltsGGdapGmNa-aI~~vv~ 27 (403)
T PRK06555 8 LLTAGGLAPCLSS-AVGGLIE 27 (403)
T ss_pred EECCCCCchhHHH-HHHHHHH
Confidence 789998 78997 5677764
No 161
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.10 E-value=89 Score=23.89 Aligned_cols=27 Identities=19% Similarity=0.447 Sum_probs=20.4
Q ss_pred HHHHHHHhhhhcCCCCCCCChHHHhhh
Q 025622 214 QELLAKVKTVIEKPHNDHLPLIEASRY 240 (250)
Q Consensus 214 ~elLe~V~~lvE~penD~LpL~eAS~l 240 (250)
-+.++++..+|++=++.++||.++..+
T Consensus 9 Eeal~~Le~IV~~LE~gdl~Leesl~l 35 (76)
T PRK14068 9 EEMMQELEQIVQKLDNETVSLEESLDL 35 (76)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 456667777777778899999998653
No 162
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=22.05 E-value=1.8e+02 Score=27.57 Aligned_cols=41 Identities=27% Similarity=0.413 Sum_probs=29.7
Q ss_pred ccccCCC---hh-HHHHHHHHHh-cCCceEEEecccccchhHHHHH
Q 025622 119 EFKPVPD---VD-YLQELLAIQQ-QGPRAIGFFGTRNMGFMHQELI 159 (250)
Q Consensus 119 ~~~~~p~---vD-~lqELaaIQq-~g~rrIa~lGsRhv~~~hq~LI 159 (250)
+++.+.- +| +++.|..|++ .|++.|+++|+.++..-...++
T Consensus 66 ~~~~iSWdeAl~~ia~kl~~i~~~~G~~~i~~~~~~~~~~e~~~~~ 111 (565)
T cd02754 66 ELVPVSWDEALDLIAERFKAIQAEYGPDSVAFYGSGQLLTEEYYAA 111 (565)
T ss_pred CEEEccHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCccHHHHHHH
Confidence 5666662 66 7778888875 7999999999988775444443
No 163
>PRK07094 biotin synthase; Provisional
Probab=21.91 E-value=2e+02 Score=25.27 Aligned_cols=40 Identities=13% Similarity=0.105 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHH
Q 025622 128 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALV 167 (250)
Q Consensus 128 ~lqELaaIQq~g~rrIa~lGsRhv~~~hq~LIEllsyAlv 167 (250)
++.|+..+.+.|.++|.|.|..+--+....+.|++.+.-.
T Consensus 75 i~~~~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~ 114 (323)
T PRK07094 75 ILECAKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKK 114 (323)
T ss_pred HHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHc
Confidence 6677777777888888887665433345677777665543
No 164
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=21.86 E-value=2e+02 Score=26.70 Aligned_cols=47 Identities=17% Similarity=0.323 Sum_probs=29.7
Q ss_pred hh-HHHHHHHHHhc-CCceEEEecccccchhHHHHHHHHHHHHHHhCCceeecC
Q 025622 126 VD-YLQELLAIQQQ-GPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSG 177 (250)
Q Consensus 126 vD-~lqELaaIQq~-g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSG 177 (250)
+| +++.|.+++++ |++.|++.|+... -..++.-+.. ++..+++++.+
T Consensus 80 l~~ia~~l~~~~~~~G~~~i~~~~~~~~---~~~~~~~~~~--~lGt~n~~~~~ 128 (454)
T cd02755 80 LQYIASKLKEIKEQHGPESVLFGGHGGC---YSPFFKHFAA--AFGSPNIFSHE 128 (454)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEecCCc---ccHHHHHHHH--HhCCCCCCCcc
Confidence 56 77888888865 9999999987654 1223333332 45566665544
No 165
>PF14734 DUF4469: Domain of unknown function (DUF4469) with IG-like fold
Probab=21.79 E-value=57 Score=26.02 Aligned_cols=30 Identities=30% Similarity=0.476 Sum_probs=21.5
Q ss_pred CCchHHHHHhhhhhcCCCceeEeecccccC
Q 025622 179 SGTNAAVIRGALRAERPDLLTVILPQSLKK 208 (250)
Q Consensus 179 ~GtNaAvIRGalrae~P~lLTViLPQSL~k 208 (250)
.|+-..|=...+-.++|..|.++||++|+.
T Consensus 47 ~g~~~~v~~~~i~~N~ps~l~~~lPa~L~~ 76 (102)
T PF14734_consen 47 EGTETKVPCSSIVRNKPSRLIFILPADLAA 76 (102)
T ss_pred CCceEEecHHHeEeCCCcEEEEECcCccCc
Confidence 343334444556667999999999998864
No 166
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=21.70 E-value=2.4e+02 Score=26.31 Aligned_cols=51 Identities=24% Similarity=0.378 Sum_probs=30.6
Q ss_pred hh-HHHHHHHHHh-cCCceEEEe-cccccchhHHHHHHH-HHHHHHHhCCceeecCC
Q 025622 126 VD-YLQELLAIQQ-QGPRAIGFF-GTRNMGFMHQELIEI-LSYALVITKNHIYTSGA 178 (250)
Q Consensus 126 vD-~lqELaaIQq-~g~rrIa~l-GsRhv~~~hq~LIEl-lsyAlvl~gn~i~TSGA 178 (250)
+| +++.|.+|++ .|+..|+++ |+-+.+.....+... +.. ++..+++..++.
T Consensus 79 l~~ia~~l~~~~~~~G~~~i~~~~g~~~~~~~~~~~~~~~~~~--~~Gs~~~~~~~~ 133 (477)
T cd02759 79 LDEIAEKLAEIKAEYGPESIATAVGTGRGTMWQDSLFWIRFVR--LFGSPNLFLSGE 133 (477)
T ss_pred HHHHHHHHHHHHHHhCCceEEEeccCCCccccchhHHHHHHHH--hcCCCcccCCcc
Confidence 56 6778888876 699999997 666665444333321 222 344555555443
No 167
>PRK09082 methionine aminotransferase; Validated
Probab=21.66 E-value=1e+02 Score=27.36 Aligned_cols=22 Identities=18% Similarity=0.096 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHhCCceeecC
Q 025622 156 QELIEILSYALVITKNHIYTSG 177 (250)
Q Consensus 156 q~LIEllsyAlvl~gn~i~TSG 177 (250)
++.++++..++...|.+|+..-
T Consensus 101 ~~al~~~~~~~~~~gd~Vli~~ 122 (386)
T PRK09082 101 TEALFAAILALVRPGDEVIVFD 122 (386)
T ss_pred HHHHHHHHHHHcCCCCEEEEeC
Confidence 3445555555555555555443
No 168
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=21.65 E-value=3.8e+02 Score=20.56 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=12.3
Q ss_pred CCceeecCCCCc-----hHHHHHhhhhh
Q 025622 170 KNHIYTSGASGT-----NAAVIRGALRA 192 (250)
Q Consensus 170 gn~i~TSGA~Gt-----NaAvIRGalra 192 (250)
.-.|+.||+.+. .|.+.+-.+..
T Consensus 35 ~~~ii~sGg~~~~~~~~ea~~m~~~l~~ 62 (150)
T cd06259 35 APKLIVSGGQGPGEGYSEAEAMARYLIE 62 (150)
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHH
Confidence 345666666553 44555554444
No 169
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=21.60 E-value=74 Score=23.53 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=18.4
Q ss_pred HHHHHHhhhhcCCCCCCCChHHHhhh
Q 025622 215 ELLAKVKTVIEKPHNDHLPLIEASRY 240 (250)
Q Consensus 215 elLe~V~~lvE~penD~LpL~eAS~l 240 (250)
+.++++..+|++=+++++||.++-.+
T Consensus 5 e~l~~Le~Iv~~LE~~~l~Leesl~l 30 (67)
T TIGR01280 5 EALSELEQIVQKLESGDLALEEALNL 30 (67)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 34555666677777889999998643
No 170
>PRK02948 cysteine desulfurase; Provisional
Probab=21.56 E-value=1.2e+02 Score=26.59 Aligned_cols=19 Identities=11% Similarity=0.135 Sum_probs=12.7
Q ss_pred CCCCCCChHHHhhhhhhhh
Q 025622 227 PHNDHLPLIEASRYTISFA 245 (250)
Q Consensus 227 penD~LpL~eAS~lCns~~ 245 (250)
|...-+|+.+-..+|....
T Consensus 150 ~tG~~~~~~~I~~l~~~~~ 168 (381)
T PRK02948 150 EIGTIQPIAEIGALLKKYN 168 (381)
T ss_pred CcEeehhHHHHHHHHHHcC
Confidence 3346678888888887543
No 171
>PRK06756 flavodoxin; Provisional
Probab=21.55 E-value=1e+02 Score=24.01 Aligned_cols=29 Identities=17% Similarity=0.383 Sum_probs=18.6
Q ss_pred ccCCC-hh-HHHHHHHHHhcCCceEEEecccc
Q 025622 121 KPVPD-VD-YLQELLAIQQQGPRAIGFFGTRN 150 (250)
Q Consensus 121 ~~~p~-vD-~lqELaaIQq~g~rrIa~lGsRh 150 (250)
..+|+ +. ++++|....-+ .|++++|||-.
T Consensus 63 g~~p~~~~~fl~~l~~~~l~-~k~~~~fgt~~ 93 (148)
T PRK06756 63 GDLPDDFLDFYDAMDSIDLT-GKKAAVFGSCD 93 (148)
T ss_pred CCCcHHHHHHHHHHhcCCCC-CCEEEEEeCCC
Confidence 35675 44 87877554333 46799999844
No 172
>TIGR00372 cas4 CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.
Probab=21.52 E-value=48 Score=26.14 Aligned_cols=80 Identities=20% Similarity=0.349 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhhh-cCCCceeEeecccccCCChhHHHHHHHHhhhhcCCCCCCCC
Q 025622 155 HQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRA-ERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLP 233 (250)
Q Consensus 155 hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalra-e~P~lLTViLPQSL~kQp~Es~elLe~V~~lvE~penD~Lp 233 (250)
-.+.+.+..||+++..+.. -|.+|.+-- ..-...+|-+-..+ -.+..+.++++..+++ ++..|
T Consensus 95 ~~~~~Ql~~Ya~~l~~~~~----------~v~~g~l~y~~~~~~~~v~~~~~~---~~~~~~~~~~i~~~~~---~~~~P 158 (178)
T TIGR00372 95 EAHKYQLLAYAYLLEEMYG----------EIVRGYILYIEAGKKLEVEISEEL---RKKAEKLIEKIRELLE---GGKPP 158 (178)
T ss_pred hhHHHHHHHHHHHHHHhhC----------CCCcEEEEEEeCCcEEEecCCHHH---HHHHHHHHHHHHHHHh---CCCCC
Confidence 5678999999999987631 111333321 11122233222111 1122233333333443 35566
Q ss_pred -hHHHhhhhhhhhhcccC
Q 025622 234 -LIEASRYTISFAFFLFC 250 (250)
Q Consensus 234 -L~eAS~lCns~~~~~~~ 250 (250)
.....+.|..-.|.-+|
T Consensus 159 ~~~~~~~~C~~C~y~~~C 176 (178)
T TIGR00372 159 SPPKSSRKCKFCPYREIC 176 (178)
T ss_pred CCCCCCCcCCCCCCcccc
Confidence 44567899998888877
No 173
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=21.34 E-value=95 Score=26.84 Aligned_cols=16 Identities=19% Similarity=0.247 Sum_probs=10.4
Q ss_pred CChHHHhhhhhhhhhc
Q 025622 232 LPLIEASRYTISFAFF 247 (250)
Q Consensus 232 LpL~eAS~lCns~~~~ 247 (250)
-++.+-..+|...-.+
T Consensus 191 ~~~~~l~~la~~~~~~ 206 (397)
T PRK06939 191 APLPEICDLADKYDAL 206 (397)
T ss_pred CCHHHHHHHHHHhCCE
Confidence 4677777888765433
No 174
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=21.31 E-value=2.8e+02 Score=22.17 Aligned_cols=40 Identities=15% Similarity=0.014 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhCC
Q 025622 128 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKN 171 (250)
Q Consensus 128 ~lqELaaIQq~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn 171 (250)
++.++... ....+.|.|.| -=|++|-+++|++.|+-.. |.
T Consensus 52 i~~~i~~~-~~~~~~i~~sG--GEPll~~~l~~li~~~~~~-g~ 91 (191)
T TIGR02495 52 LLEFLRSR-QGLIDGVVITG--GEPTLQAGLPDFLRKVREL-GF 91 (191)
T ss_pred HHHHHHHh-cCCCCeEEEEC--CcccCcHhHHHHHHHHHHC-CC
Confidence 55555543 23467899998 4589998899999988664 54
No 175
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=21.30 E-value=4.5e+02 Score=21.37 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=22.6
Q ss_pred hcCCceEEEeccccc-----chhHHHHHHHHHHHHHHhC
Q 025622 137 QQGPRAIGFFGTRNM-----GFMHQELIEILSYALVITK 170 (250)
Q Consensus 137 q~g~rrIa~lGsRhv-----~~~hq~LIEllsyAlvl~g 170 (250)
++|.++|+++|..+- ...+++-+|-+..++..-|
T Consensus 109 ~~g~~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~~~~~~ 147 (270)
T cd01544 109 ELGHTRIGFIGGEEKTTDGHEYIEDPRETAFREYMKEKG 147 (270)
T ss_pred HcCCCcEEEECCCcccccccchhhhHHHHHHHHHHHHcC
Confidence 479999999987542 1244555666666666655
No 176
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=21.29 E-value=1e+02 Score=29.63 Aligned_cols=69 Identities=23% Similarity=0.334 Sum_probs=44.9
Q ss_pred hh-HHHHHHHHHhcCCceEEEecc------------------------------------------------cccchhH-
Q 025622 126 VD-YLQELLAIQQQGPRAIGFFGT------------------------------------------------RNMGFMH- 155 (250)
Q Consensus 126 vD-~lqELaaIQq~g~rrIa~lGs------------------------------------------------Rhv~~~h- 155 (250)
+| +++|+..+.+.|-|.|.+||. -|+|++.
T Consensus 56 id~l~~~v~~~~~~GI~~v~lFgvi~~~~Kd~~gs~a~~~~g~v~~air~iK~~~pdl~vi~Dvclc~YT~hGHcGil~~ 135 (324)
T PF00490_consen 56 IDSLVKEVEEAVDLGIRAVILFGVIDPSKKDEEGSEAYNPDGLVQRAIRAIKKAFPDLLVITDVCLCEYTSHGHCGILDD 135 (324)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEEE-SCSC-BSS-GGGGSTTSHHHHHHHHHHHHSTTSEEEEEE-STTTBTSSSSSEB-C
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeeCCcccCCcchhcccCCCChHHHHHHHHHHhCCCcEEEEecccccccCCCceEEEEC
Confidence 67 889999999999999999998 2677771
Q ss_pred -------HHHHHHH---HHHHHHhCCc-eeecCCCCchHHHHHhhhhhcC
Q 025622 156 -------QELIEIL---SYALVITKNH-IYTSGASGTNAAVIRGALRAER 194 (250)
Q Consensus 156 -------q~LIEll---syAlvl~gn~-i~TSGA~GtNaAvIRGalrae~ 194 (250)
..-+|+| +-+.+..|=+ |..|+-.---.++||-+|..+.
T Consensus 136 ~~g~idND~Tl~~Lak~Al~~A~AGADiVAPSdMMDGrV~aIR~aLd~~g 185 (324)
T PF00490_consen 136 EDGEIDNDETLERLAKQALSHAEAGADIVAPSDMMDGRVGAIREALDEAG 185 (324)
T ss_dssp TTSSBEHHHHHHHHHHHHHHHHHHT-SEEEE-S--TTHHHHHHHHHHHTT
T ss_pred CCCeEecHHHHHHHHHHHHHHHHhCCCeeccccccCCHHHHHHHHHHhCC
Confidence 2333443 3455666644 4567776667788999998854
No 177
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=21.26 E-value=2e+02 Score=23.83 Aligned_cols=33 Identities=12% Similarity=0.063 Sum_probs=20.0
Q ss_pred HHhcCCceEEEecccccchhHHHHHHHHHHHHH
Q 025622 135 IQQQGPRAIGFFGTRNMGFMHQELIEILSYALV 167 (250)
Q Consensus 135 IQq~g~rrIa~lGsRhv~~~hq~LIEllsyAlv 167 (250)
+.++|.++|+|++..+---.+++-.|=...++.
T Consensus 147 l~~~G~~~I~~l~~~~~~~~~~~R~~Gf~~~~~ 179 (309)
T PRK11041 147 LHELGHKRIACIAGPEEMPLCHYRLQGYVQALR 179 (309)
T ss_pred HHHcCCceEEEEeCCccccchHHHHHHHHHHHH
Confidence 445799999999766543344444444444443
No 178
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=21.12 E-value=1.1e+02 Score=23.35 Aligned_cols=45 Identities=16% Similarity=0.288 Sum_probs=32.3
Q ss_pred eEEEecccccchhHHHHHHHHHHHHHHhCCceeecCC-CCchHHHHHh
Q 025622 142 AIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGA-SGTNAAVIRG 188 (250)
Q Consensus 142 rIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA-~GtNaAvIRG 188 (250)
||||+|.. |++=++|+++|...--.+--.|+-+.. .|...+...+
T Consensus 1 rV~IvGAt--G~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~ 46 (121)
T PF01118_consen 1 RVAIVGAT--GYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFP 46 (121)
T ss_dssp EEEEESTT--SHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTG
T ss_pred CEEEECCC--CHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhcc
Confidence 78999932 677789999988755555556666666 7777776655
No 179
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=21.06 E-value=2e+02 Score=26.67 Aligned_cols=39 Identities=18% Similarity=0.114 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhcCCceEEEecccccch-hHHHHHHHHHHH
Q 025622 127 DYLQELLAIQQQGPRAIGFFGTRNMGF-MHQELIEILSYA 165 (250)
Q Consensus 127 D~lqELaaIQq~g~rrIa~lGsRhv~~-~hq~LIEllsyA 165 (250)
++++|..++.+.|-++|.|.|.++... --.+++|++...
T Consensus 108 EI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~~~i~~I 147 (371)
T PRK09240 108 EIEREMAAIKKLGFEHILLLTGEHEAKVGVDYIRRALPIA 147 (371)
T ss_pred HHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHH
Confidence 388999999999999999999887653 345666666543
No 180
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=21.01 E-value=1.2e+02 Score=29.22 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=21.1
Q ss_pred hh-HHHHHHHHHhcCCceEEEecc
Q 025622 126 VD-YLQELLAIQQQGPRAIGFFGT 148 (250)
Q Consensus 126 vD-~lqELaaIQq~g~rrIa~lGs 148 (250)
+| +++|+..+.+.|-+.|.+||-
T Consensus 60 id~l~~~~~~~~~~Gi~~v~lFgv 83 (322)
T PRK13384 60 ESALADEIERLYALGIRYVMPFGI 83 (322)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCC
Confidence 57 889999999999999999996
No 181
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=20.98 E-value=28 Score=29.97 Aligned_cols=15 Identities=47% Similarity=0.716 Sum_probs=13.3
Q ss_pred CCCcccccccccccc
Q 025622 50 SHPTQHSWRARRTKK 64 (250)
Q Consensus 50 s~psQsq~~~rRsR~ 64 (250)
-+|.||.|.++|.|+
T Consensus 281 ~~P~QW~W~h~Rwk~ 295 (295)
T PF03279_consen 281 EHPEQWFWFHRRWKT 295 (295)
T ss_pred cChHhhcchHHhhCc
Confidence 689999999999874
No 182
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=20.96 E-value=2e+02 Score=26.35 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=29.1
Q ss_pred HHHHhcCCceEEEeccccc---chhHHHHHHHHHHHHHHhCCceeecCCCCchHHHHHhhhh
Q 025622 133 LAIQQQGPRAIGFFGTRNM---GFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALR 191 (250)
Q Consensus 133 aaIQq~g~rrIa~lGsRhv---~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalr 191 (250)
.+|++-| ++.-|+|.. --.|.+|=|.++.-.--+..-+++|| ..+|.++|...++
T Consensus 23 ~a~~~~g---~~~~~sr~~yg~~~~~~~LE~~lA~~~g~e~al~~~sG-~~a~~~~i~~l~~ 80 (392)
T PLN03227 23 ESLSHYG---CGSCGPRGFYGTIDAHLELEQCMAEFLGTESAILYSDG-ASTTSSTVAAFAK 80 (392)
T ss_pred HHHHHhC---CCCcccccccCChHHHHHHHHHHHHHhCCCcEEEecCc-HHHHHHHHHHhCC
Confidence 4566655 333344443 01577777777766655544555555 3334455555443
No 183
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=20.94 E-value=1.2e+02 Score=29.14 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=21.5
Q ss_pred hh-HHHHHHHHHhcCCceEEEecc
Q 025622 126 VD-YLQELLAIQQQGPRAIGFFGT 148 (250)
Q Consensus 126 vD-~lqELaaIQq~g~rrIa~lGs 148 (250)
+| +++|+..+.+.|-+.|.+||-
T Consensus 50 ~d~l~~~~~~~~~~Gi~~v~LFgv 73 (320)
T cd04824 50 VNRLEEFLRPLVAKGLRSVILFGV 73 (320)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCC
Confidence 57 899999999999999999996
No 184
>PRK08912 hypothetical protein; Provisional
Probab=20.76 E-value=1.1e+02 Score=27.06 Aligned_cols=20 Identities=30% Similarity=0.316 Sum_probs=9.5
Q ss_pred CceeecCCCCchHHHHHhhh
Q 025622 171 NHIYTSGASGTNAAVIRGAL 190 (250)
Q Consensus 171 n~i~TSGA~GtNaAvIRGal 190 (250)
|-++|+|+++...+++++.+
T Consensus 89 ~i~~t~G~~~al~~~~~~~~ 108 (387)
T PRK08912 89 EVMVTSGATEALAAALLALV 108 (387)
T ss_pred cEEEeCCcHHHHHHHHHHhc
Confidence 34445555554444444443
No 185
>PRK08905 lipid A biosynthesis lauroyl acyltransferase; Validated
Probab=20.74 E-value=36 Score=29.92 Aligned_cols=15 Identities=40% Similarity=0.627 Sum_probs=12.9
Q ss_pred CCCcccccccccccc
Q 025622 50 SHPTQHSWRARRTKK 64 (250)
Q Consensus 50 s~psQsq~~~rRsR~ 64 (250)
-+|.||.|.++|.|.
T Consensus 260 ~~PeQW~W~hrRwK~ 274 (289)
T PRK08905 260 RFPTQYLWGYNRYKR 274 (289)
T ss_pred cCcHHhhhhhccCCC
Confidence 689999999999753
No 186
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=20.68 E-value=52 Score=30.43 Aligned_cols=11 Identities=55% Similarity=0.833 Sum_probs=7.1
Q ss_pred eeecCC--CCchH
Q 025622 173 IYTSGA--SGTNA 183 (250)
Q Consensus 173 i~TSGA--~GtNa 183 (250)
|+|||+ .|.||
T Consensus 5 IltsGG~apGmNa 17 (317)
T cd00763 5 VLTSGGDAPGMNA 17 (317)
T ss_pred EEccCCCcHHHHH
Confidence 567775 56665
No 187
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=20.61 E-value=1.4e+02 Score=26.67 Aligned_cols=22 Identities=9% Similarity=0.113 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhCCceeecC
Q 025622 156 QELIEILSYALVITKNHIYTSG 177 (250)
Q Consensus 156 q~LIEllsyAlvl~gn~i~TSG 177 (250)
++.++++.+++...|..|++.-
T Consensus 101 ~~al~~~~~~~~~~gd~vl~~~ 122 (391)
T PRK07309 101 TEALSASLTAILEPGDKVLLPA 122 (391)
T ss_pred HHHHHHHHHHhcCCCCEEEEeC
Confidence 5667777777766666665543
No 188
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.52 E-value=4.4e+02 Score=20.88 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=21.5
Q ss_pred HhcCCceEEEecccccchhHHHHHHHHHHHHHHhC
Q 025622 136 QQQGPRAIGFFGTRNMGFMHQELIEILSYALVITK 170 (250)
Q Consensus 136 Qq~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~g 170 (250)
-++|.++|++++...---.+++.++=...++.-.|
T Consensus 113 ~~~g~~~i~~l~~~~~~~~~~~r~~gf~~~l~~~~ 147 (268)
T cd06289 113 ISLGHRRIAFIGGLEDSSTRRERLAGYRAALAEAG 147 (268)
T ss_pred HHCCCCCEEEecCCccccchHHHHHHHHHHHHHcC
Confidence 35699999999754322356666665555554333
No 189
>PRK05764 aspartate aminotransferase; Provisional
Probab=20.43 E-value=97 Score=27.18 Aligned_cols=21 Identities=10% Similarity=0.039 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhCCceeecC
Q 025622 157 ELIEILSYALVITKNHIYTSG 177 (250)
Q Consensus 157 ~LIEllsyAlvl~gn~i~TSG 177 (250)
+.+.++..++...|-+|+++.
T Consensus 102 ~a~~~~~~~~~~~gd~vl~~~ 122 (393)
T PRK05764 102 QALYNAFMALLDPGDEVIIPA 122 (393)
T ss_pred HHHHHHHHHhcCCCCEEEecC
Confidence 445555555555555555543
No 190
>KOG3728 consensus Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=20.38 E-value=94 Score=29.71 Aligned_cols=94 Identities=24% Similarity=0.348 Sum_probs=66.3
Q ss_pred ecccccchhHHHHHHHHHHHHHHhCC--ceeecCCCCchH-------HHHHhhhhhcCCCceeEeecccccCCChhHHHH
Q 025622 146 FGTRNMGFMHQELIEILSYALVITKN--HIYTSGASGTNA-------AVIRGALRAERPDLLTVILPQSLKKQPPESQEL 216 (250)
Q Consensus 146 lGsRhv~~~hq~LIEllsyAlvl~gn--~i~TSGA~GtNa-------AvIRGalrae~P~lLTViLPQSL~kQp~Es~el 216 (250)
.||-.+++|--++|-+|-||=+..-- +|=|||+-|+-- -+.-|.||+| --.+||-+-..|-..=+.++
T Consensus 108 mGtpS~SImlhEliKLl~~Arckdp~~iRiGT~GGiGv~pGTvV~s~~A~n~~l~~e---~eqiilGkrv~Rpaqld~~l 184 (308)
T KOG3728|consen 108 MGTPSFSIMLHELIKLLYYARCKDPVFIRIGTCGGIGVPPGTVVASKNAFNGLLRNE---HEQIILGKRVVRPAQLDKKL 184 (308)
T ss_pred CCCccHHHHHHHHHHHHHHccCCCceEEEEeccCccCCCCccEEEehhhhhhhhhhh---HHhhhccceeechhhhhHHH
Confidence 48889999999999999999765432 567999977532 2456777773 34456666666655444455
Q ss_pred HHHHhhhhcCCCCCCCChHHHhhhhhh
Q 025622 217 LAKVKTVIEKPHNDHLPLIEASRYTIS 243 (250)
Q Consensus 217 Le~V~~lvE~penD~LpL~eAS~lCns 243 (250)
.+.. -.+-++.||..+-..+-.+|..
T Consensus 185 ~~eL-~~~~~e~~d~~~ti~gnTmctd 210 (308)
T KOG3728|consen 185 IREL-LAFGVEANDGFQTISGNTMCTD 210 (308)
T ss_pred HHHH-HHhCCccCCCCceeeccceecc
Confidence 4443 3467888999999988888864
No 191
>PRK07682 hypothetical protein; Validated
Probab=20.38 E-value=1.6e+02 Score=25.93 Aligned_cols=22 Identities=5% Similarity=0.194 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhCCceeecC
Q 025622 156 QELIEILSYALVITKNHIYTSG 177 (250)
Q Consensus 156 q~LIEllsyAlvl~gn~i~TSG 177 (250)
++.++++.++++..|..|++.-
T Consensus 91 ~~al~~~~~~l~~~gd~vl~~~ 112 (378)
T PRK07682 91 SQALDVAMRAIINPGDEVLIVE 112 (378)
T ss_pred HHHHHHHHHHhCCCCCEEEEeC
Confidence 5677777777776777766553
No 192
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.35 E-value=2.3e+02 Score=22.76 Aligned_cols=34 Identities=29% Similarity=0.326 Sum_probs=20.9
Q ss_pred HHhcCCceEEEecccccchhHHHHHHHHHHHHHH
Q 025622 135 IQQQGPRAIGFFGTRNMGFMHQELIEILSYALVI 168 (250)
Q Consensus 135 IQq~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl 168 (250)
+.++|.|+|+++|+.+-...++.-.+=.-.++..
T Consensus 113 l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~ 146 (268)
T cd06277 113 LIEKGHRKIGFVGDPLYSPSFEERYEGYKKALLD 146 (268)
T ss_pred HHHCCCCcEEEECCCCCCcchHHHHHHHHHHHHH
Confidence 4467999999999876533444444434444443
No 193
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=20.16 E-value=97 Score=26.92 Aligned_cols=17 Identities=18% Similarity=0.180 Sum_probs=12.2
Q ss_pred CCChHHHhhhhhhhhhc
Q 025622 231 HLPLIEASRYTISFAFF 247 (250)
Q Consensus 231 ~LpL~eAS~lCns~~~~ 247 (250)
-.|+.+-..+|......
T Consensus 179 ~~~~~~i~~l~~~~~~~ 195 (385)
T TIGR01825 179 VAPLPEIVELAERYGAV 195 (385)
T ss_pred ccCHHHHHHHHHHhCCE
Confidence 36888888888765443
No 194
>PLN02564 6-phosphofructokinase
Probab=20.11 E-value=61 Score=32.27 Aligned_cols=39 Identities=31% Similarity=0.520 Sum_probs=25.9
Q ss_pred HHhcCCceEEEecccccchhHHHHHHHHHHHHHHhCCceeecCC--CCchHHHHHhhhhh
Q 025622 135 IQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGA--SGTNAAVIRGALRA 192 (250)
Q Consensus 135 IQq~g~rrIa~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA--~GtNaAvIRGalra 192 (250)
.-.-|||+=-+|=...+-+ =|+|||+ -|.|+ |||++.++
T Consensus 72 ~~~agpr~~i~f~p~~~ri------------------aIlTsGGd~PGmNa-vIRavv~~ 112 (484)
T PLN02564 72 FRRAGPRQKVYFESDEVRA------------------CIVTCGGLCPGLNT-VIREIVCG 112 (484)
T ss_pred ceecCCcceEEEcCcceEE------------------EEECCCCCCccHhH-HHHHHHHH
Confidence 3456888766665554432 3789998 79996 46666654
Done!