Query 025625
Match_columns 250
No_of_seqs 163 out of 766
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 07:45:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025625.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025625hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1724 SCF ubiquitin ligase, 100.0 1.2E-44 2.5E-49 305.4 14.9 145 13-159 2-155 (162)
2 COG5201 SKP1 SCF ubiquitin lig 100.0 7.9E-39 1.7E-43 258.5 13.0 141 16-160 2-151 (158)
3 smart00512 Skp1 Found in Skp1 99.9 1.1E-26 2.3E-31 182.2 10.5 100 16-116 2-104 (104)
4 PF01466 Skp1: Skp1 family, di 99.9 2.8E-24 6.2E-29 161.0 4.7 71 89-159 1-71 (78)
5 PF03931 Skp1_POZ: Skp1 family 99.7 1.5E-17 3.3E-22 119.3 5.9 60 17-80 2-61 (62)
6 KOG3473 RNA polymerase II tran 99.6 3E-15 6.5E-20 116.1 7.1 98 13-116 14-112 (112)
7 PHA02713 hypothetical protein; 98.8 5.9E-08 1.3E-12 96.3 11.7 105 15-139 25-131 (557)
8 PF00651 BTB: BTB/POZ domain; 98.6 2E-07 4.3E-12 71.6 8.7 98 15-129 10-109 (111)
9 PHA02790 Kelch-like protein; P 98.6 8E-08 1.7E-12 93.5 7.4 125 20-184 25-151 (480)
10 KOG4441 Proteins containing BT 98.5 3.9E-07 8.5E-12 90.9 8.9 154 16-213 37-191 (571)
11 PHA03098 kelch-like protein; P 98.3 3.2E-06 6.9E-11 82.5 10.1 99 16-136 10-110 (534)
12 smart00225 BTB Broad-Complex, 98.2 4.2E-06 9E-11 60.3 5.5 85 22-124 5-90 (90)
13 KOG4350 Uncharacterized conser 94.6 0.18 3.8E-06 49.1 8.5 107 16-127 45-173 (620)
14 KOG4682 Uncharacterized conser 93.8 0.1 2.2E-06 50.5 5.1 123 17-160 71-196 (488)
15 KOG2716 Polymerase delta-inter 93.2 0.42 9.2E-06 43.0 7.8 103 15-134 4-108 (230)
16 KOG0783 Uncharacterized conser 89.3 0.63 1.4E-05 48.9 5.4 110 18-141 713-825 (1267)
17 KOG3433 Protein involved in me 87.0 0.68 1.5E-05 40.4 3.4 54 92-150 137-200 (203)
18 COG5124 Protein predicted to b 82.9 0.96 2.1E-05 39.3 2.4 32 115-151 174-205 (209)
19 PF11822 DUF3342: Domain of un 82.7 2.3 5.1E-05 40.0 5.1 92 25-132 13-105 (317)
20 PF02214 BTB_2: BTB/POZ domain 76.0 1.5 3.2E-05 33.0 1.3 83 24-123 6-94 (94)
21 PF07928 Vps54: Vps54-like pro 70.6 1.4 3E-05 36.4 0.0 75 24-129 1-75 (135)
22 KOG2075 Topoisomerase TOP1-int 57.6 44 0.00096 33.4 7.5 103 26-130 129-249 (521)
23 PF03962 Mnd1: Mnd1 family; I 56.5 11 0.00023 32.8 2.9 43 103-150 143-187 (188)
24 KOG1665 AFH1-interacting prote 50.9 19 0.00041 32.8 3.5 93 14-124 7-104 (302)
25 KOG0511 Ankyrin repeat protein 44.7 54 0.0012 32.1 5.8 109 20-132 295-431 (516)
26 PF06375 BLVR: Bovine leukaemi 40.2 9.4 0.0002 32.4 0.0 9 150-158 2-10 (154)
27 PF09278 MerR-DNA-bind: MerR, 39.9 40 0.00086 23.2 3.2 40 132-185 13-52 (65)
28 PF03656 Pam16: Pam16; InterP 37.8 28 0.00061 28.5 2.4 45 130-174 51-101 (127)
29 PRK05365 malonic semialdehyde 36.7 19 0.00042 30.5 1.4 34 107-150 131-164 (195)
30 cd02148 Nitroreductase_5 Nitro 32.8 22 0.00049 29.8 1.2 34 107-150 124-157 (185)
31 cd05029 S-100A6 S-100A6: S-100 31.4 44 0.00095 25.1 2.4 44 116-159 9-58 (88)
32 KOG2422 Uncharacterized conser 31.4 20 0.00043 36.6 0.7 15 142-156 24-38 (665)
33 PRK12540 RNA polymerase sigma 30.8 1.5E+02 0.0031 24.8 5.8 18 130-147 124-141 (182)
34 PF02519 Auxin_inducible: Auxi 29.2 2.1E+02 0.0045 22.3 6.0 58 16-76 39-99 (100)
35 KOG4591 Uncharacterized conser 29.0 54 0.0012 29.5 2.9 59 56-129 106-164 (280)
36 PF12556 CobS_N: Cobaltochelat 28.0 34 0.00073 22.1 1.1 12 139-150 14-25 (36)
37 COG4957 Predicted transcriptio 27.8 48 0.001 27.7 2.2 37 133-187 98-134 (148)
38 PF11978 MVP_shoulder: Shoulde 26.8 47 0.001 27.0 2.0 41 108-148 37-90 (118)
39 PRK11053 dihydropteridine redu 26.1 44 0.00096 28.8 1.9 34 104-147 147-180 (217)
40 KOG0027 Calmodulin and related 24.2 2.2E+02 0.0047 22.9 5.6 61 100-160 42-113 (151)
41 KOG2609 Cyclin D-interacting p 24.2 88 0.0019 28.1 3.3 46 161-213 155-200 (228)
42 PF11792 Baculo_LEF5_C: Baculo 24.1 33 0.00073 23.0 0.6 14 197-210 22-35 (43)
43 KOG2002 TPR-containing nuclear 23.6 52 0.0011 35.5 2.1 7 203-209 882-888 (1018)
44 PF15063 TC1: Thyroid cancer p 23.4 56 0.0012 24.6 1.7 42 125-166 28-69 (79)
45 KOG3442 Uncharacterized conser 21.6 1.2E+02 0.0026 25.0 3.4 29 132-160 54-82 (132)
46 PF05409 Peptidase_C30: Corona 21.1 1.2E+02 0.0026 28.3 3.7 96 57-157 162-268 (293)
47 COG3370 Uncharacterized protei 21.0 53 0.0012 26.4 1.2 38 100-152 52-89 (113)
48 PF14748 P5CR_dimer: Pyrroline 20.8 2.5E+02 0.0053 21.7 5.0 54 122-175 47-102 (107)
49 cd00167 SANT 'SWI3, ADA2, N-Co 20.6 89 0.0019 18.9 2.1 21 124-144 22-42 (45)
No 1
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-44 Score=305.40 Aligned_cols=145 Identities=37% Similarity=0.596 Sum_probs=133.2
Q ss_pred CCCccEEEEeCCCCEEEecHHHHhHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCC--------
Q 025625 13 MMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGS-------- 84 (250)
Q Consensus 13 ~~~~~I~L~SsDG~~f~V~~~aa~~S~~I~~ml~~~~~~~~~~~~IpLp~~Vss~iL~kIIeyC~~Hk~~~~-------- 84 (250)
+++++|+|+|+||++|+|+.++|++|.+|++++.+.|++.. +.+|||| +|+|.||.+||+||+||+.+++
T Consensus 2 ~~~~~ikL~SsDG~~f~ve~~~a~~s~~i~~~~~~~~~~~~-~~~IPl~-nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~ 79 (162)
T KOG1724|consen 2 MSKKKIKLESSDGEIFEVEEEVARQSQTISAHMIEDGCADE-NDPIPLP-NVTSKILKKVIEWCKKHKDDDPANPEDKEL 79 (162)
T ss_pred CCCCeEEEEccCCceeehhHHHHHHhHHHHHHHHHcCCCcc-CCccccC-ccCHHHHHHHHHHHHHcccccccccccccc
Confidence 67789999999999999999999999999999999988642 2599999 7999999999999999998643
Q ss_pred -CchhcchhhhhhhcCChHHHHhhhhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhcccc
Q 025625 85 -SNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLK 159 (250)
Q Consensus 85 -s~~~i~~wD~eFl~id~~~L~eLi~AAnyL~I~~Lldl~c~~VA~~IkGKT~eEIR~~FgI~~D~T~EEe~ei~~ 159 (250)
....++.||++|+++|..+||+||.|||||+|++|+++||++||+||+||||+|||.+|||++|+|+||+.++++
T Consensus 80 ~~~~~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~f~I~~d~t~eE~~~~~~ 155 (162)
T KOG1724|consen 80 PEETDIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREIFNIENDETPEEEEAIRK 155 (162)
T ss_pred cccCCccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHHcCCCCCCChhHHHHHhh
Confidence 223489999999999999999999999999999999999999999999999999999999999999988877665
No 2
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-39 Score=258.50 Aligned_cols=141 Identities=34% Similarity=0.514 Sum_probs=127.8
Q ss_pred ccEEEEeCCCCEEEecHHHHhHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCC---C------c
Q 025625 16 SYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGS---S------N 86 (250)
Q Consensus 16 ~~I~L~SsDG~~f~V~~~aa~~S~~I~~ml~~~~~~~~~~~~IpLp~~Vss~iL~kIIeyC~~Hk~~~~---s------~ 86 (250)
+.|.|.|.||++|.|+..+|..|-+|++|+.+.+- .+.|||+| +|+|.+|.+|++||+||..... + .
T Consensus 2 s~i~l~s~dge~F~vd~~iAerSiLikN~l~d~~~---~n~p~p~p-nVrSsvl~kv~ew~ehh~~s~sede~d~~~rks 77 (158)
T COG5201 2 SMIELESIDGEIFRVDENIAERSILIKNMLCDSTA---CNYPIPAP-NVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKS 77 (158)
T ss_pred CceEEEecCCcEEEehHHHHHHHHHHHHHhccccc---cCCCCccc-chhHHHHHHHHHHHHhccccCCCccChHhhhcc
Confidence 57999999999999999999999999998765432 47889999 8999999999999999997431 1 1
Q ss_pred hhcchhhhhhhcCChHHHHhhhhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhccccc
Q 025625 87 KERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKN 160 (250)
Q Consensus 87 ~~i~~wD~eFl~id~~~L~eLi~AAnyL~I~~Lldl~c~~VA~~IkGKT~eEIR~~FgI~~D~T~EEe~ei~~~ 160 (250)
.....||+.|+.+|+++|+++++|||||+|++|+++||+.||.||+||||+|||++|||++||||||++.++++
T Consensus 78 ~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirgkSpeeir~tfni~ndfTpEEe~~irkE 151 (158)
T COG5201 78 KPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKSPEEIRETFNIENDFTPEEERRIRKE 151 (158)
T ss_pred CCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHccCCHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 24567999999999999999999999999999999999999999999999999999999999999999998884
No 3
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=99.94 E-value=1.1e-26 Score=182.16 Aligned_cols=100 Identities=32% Similarity=0.523 Sum_probs=88.7
Q ss_pred ccEEEEeCCCCEEEecHHHHhHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCc---hhcchh
Q 025625 16 SYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSN---KERKSF 92 (250)
Q Consensus 16 ~~I~L~SsDG~~f~V~~~aa~~S~~I~~ml~~~~~~~~~~~~IpLp~~Vss~iL~kIIeyC~~Hk~~~~s~---~~i~~w 92 (250)
.+|+|+|+||++|.|++++|++|.+|++|+.+.+.+.+.+.+|||| +|++.+|++|++||+||+.++.+. ..+++|
T Consensus 2 ~~v~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~~~~~~Ipl~-~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 2 KYIKLISSDGEVFEVEREVARQSKTIKAMIEDLGVDDENNNPIPLP-NVTSKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred CeEEEEeCCCCEEEecHHHHHHHHHHHHHHHccCcccCCCCCccCC-CcCHHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 5799999999999999999999999999998766543333689999 899999999999999999775432 358999
Q ss_pred hhhhhcCChHHHHhhhhhcccCCC
Q 025625 93 DEKFIRMDTKRLCELTSAADSLQL 116 (250)
Q Consensus 93 D~eFl~id~~~L~eLi~AAnyL~I 116 (250)
|.+|++++.+.||+|+.|||||+|
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999997
No 4
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=99.90 E-value=2.8e-24 Score=161.03 Aligned_cols=71 Identities=41% Similarity=0.663 Sum_probs=61.5
Q ss_pred cchhhhhhhcCChHHHHhhhhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhcccc
Q 025625 89 RKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLK 159 (250)
Q Consensus 89 i~~wD~eFl~id~~~L~eLi~AAnyL~I~~Lldl~c~~VA~~IkGKT~eEIR~~FgI~~D~T~EEe~ei~~ 159 (250)
+++||++|++++.+.|++|+.||+||+|++|+++||++||.+|+||||+|||++|||++|+|+||+++++.
T Consensus 1 l~~wD~~F~~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~eee~~i~~ 71 (78)
T PF01466_consen 1 LPEWDQEFLDVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTPEEEEEIRK 71 (78)
T ss_dssp HHHHHHHHT-S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSHHHHHHHHH
T ss_pred CCHHHHHHHHcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999998665
No 5
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=99.71 E-value=1.5e-17 Score=119.29 Aligned_cols=60 Identities=27% Similarity=0.463 Sum_probs=53.1
Q ss_pred cEEEEeCCCCEEEecHHHHhHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcc
Q 025625 17 YIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQ 80 (250)
Q Consensus 17 ~I~L~SsDG~~f~V~~~aa~~S~~I~~ml~~~~~~~~~~~~IpLp~~Vss~iL~kIIeyC~~Hk 80 (250)
+|+|+|+||++|.|++++|++|.+|++|+.+.+.. ..+|||| +|++.+|++|++||+||+
T Consensus 2 ~v~L~SsDg~~f~V~~~~a~~S~~i~~ml~~~~~~---~~~Ipl~-~v~~~~L~kViewc~~H~ 61 (62)
T PF03931_consen 2 YVKLVSSDGQEFEVSREAAKQSKTIKNMLEDLGDE---DEPIPLP-NVSSRILKKVIEWCEHHK 61 (62)
T ss_dssp EEEEEETTSEEEEEEHHHHTTSHHHHHHHHCTCCC---GTEEEET-TS-HHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCEEEeeHHHHHHhHHHHHHHhhhccc---ccccccC-ccCHHHHHHHHHHHHhcC
Confidence 68999999999999999999999999998765532 2279999 899999999999999996
No 6
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=99.59 E-value=3e-15 Score=116.11 Aligned_cols=98 Identities=18% Similarity=0.212 Sum_probs=84.1
Q ss_pred CCCccEEEEeCCCCEEEecHHHHhHcHHHHHHHhhcCC-CCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCchhcch
Q 025625 13 MMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGM-GSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKS 91 (250)
Q Consensus 13 ~~~~~I~L~SsDG~~f~V~~~aa~~S~~I~~ml~~~~~-~~~~~~~IpLp~~Vss~iL~kIIeyC~~Hk~~~~s~~~i~~ 91 (250)
|.+.+|+|+|+||++|.|.+++|+.|++|+.|+...+. ....++.+-++ +|.+.+|++|++|+.+...+..+..++|+
T Consensus 14 p~~~yVkLvS~Ddhefiikre~AmtSgTiraml~gpg~~se~~~n~v~f~-di~shiLeKvc~Yl~Yk~rY~~~s~eiPe 92 (112)
T KOG3473|consen 14 PDSMYVKLVSSDDHEFIIKREHAMTSGTIRAMLSGPGVFSEAEKNEVYFR-DIPSHILEKVCEYLAYKVRYTNSSTEIPE 92 (112)
T ss_pred cchhheEeecCCCcEEEEeehhhhhhhHHHHHHcCCccccccccceEEec-cchHHHHHHHHHHhhheeeeccccccCCC
Confidence 44579999999999999999999999999999875553 23356789999 79999999999999987766555578888
Q ss_pred hhhhhhcCChHHHHhhhhhcccCCC
Q 025625 92 FDEKFIRMDTKRLCELTSAADSLQL 116 (250)
Q Consensus 92 wD~eFl~id~~~L~eLi~AAnyL~I 116 (250)
| .+..++.++|+.|||||++
T Consensus 93 F-----~IppemaleLL~aAn~Lec 112 (112)
T KOG3473|consen 93 F-----DIPPEMALELLMAANYLEC 112 (112)
T ss_pred C-----CCCHHHHHHHHHHhhhhcC
Confidence 7 5899999999999999974
No 7
>PHA02713 hypothetical protein; Provisional
Probab=98.76 E-value=5.9e-08 Score=96.26 Aligned_cols=105 Identities=12% Similarity=0.082 Sum_probs=84.3
Q ss_pred CccEEEEeCCCCEEEecHHH-HhHcHHHHHHHhhcCCCCC-CCcccccCCCCCHHHHHHHHHHHHhccCCCCCchhcchh
Q 025625 15 KSYIWLQTADGSIQQVEQEV-AMFCPLICQEVIQKGMGSS-KNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSF 92 (250)
Q Consensus 15 ~~~I~L~SsDG~~f~V~~~a-a~~S~~I~~ml~~~~~~~~-~~~~IpLp~~Vss~iL~kIIeyC~~Hk~~~~s~~~i~~w 92 (250)
...|+|...+|+.|.+++.+ |..|++++.|+.. ++.+. ....|.|. +|++.+|+.||+|++...
T Consensus 25 l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~-~~~e~~~~~~v~l~-~v~~~~~~~ll~y~Yt~~------------ 90 (557)
T PHA02713 25 LCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTT-PMIIRDLVTRVNLQ-MFDKDAVKNIVQYLYNRH------------ 90 (557)
T ss_pred CCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcC-CchhhccCceEEec-cCCHHHHHHHHHHhcCCC------------
Confidence 46899988779999999999 4589999999863 33321 24568997 899999999999998853
Q ss_pred hhhhhcCChHHHHhhhhhcccCCCchHHHHHHHHHHHHHhCCCHHHH
Q 025625 93 DEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEI 139 (250)
Q Consensus 93 D~eFl~id~~~L~eLi~AAnyL~I~~Lldl~c~~VA~~IkGKT~eEI 139 (250)
++.+.+.+|+.||++|+|+.|.+.||.++...+.-.+-=+|
T Consensus 91 ------i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i 131 (557)
T PHA02713 91 ------ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYM 131 (557)
T ss_pred ------CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHH
Confidence 35677999999999999999999999999885554443333
No 8
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=98.63 E-value=2e-07 Score=71.61 Aligned_cols=98 Identities=22% Similarity=0.289 Sum_probs=77.2
Q ss_pred CccEEEEeCCCCEEEecHHHH-hHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCchhcchhh
Q 025625 15 KSYIWLQTADGSIQQVEQEVA-MFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFD 93 (250)
Q Consensus 15 ~~~I~L~SsDG~~f~V~~~aa-~~S~~I~~ml~~~~~~~~~~~~IpLp~~Vss~iL~kIIeyC~~Hk~~~~s~~~i~~wD 93 (250)
...++|...||..|.|++.++ ..|+++++++...+........|+++ +++...+..+++||+....
T Consensus 10 ~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~l~~~Y~~~~------------ 76 (111)
T PF00651_consen 10 FSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLP-DVSPEAFEAFLEYMYTGEI------------ 76 (111)
T ss_dssp S--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEET-TSCHHHHHHHHHHHHHSEE------------
T ss_pred CCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccc-cccccccccccccccCCcc------------
Confidence 468899999999999999995 67999999987553222122368888 8999999999999965542
Q ss_pred hhhhcCC-hHHHHhhhhhcccCCCchHHHHHHHHHHH
Q 025625 94 EKFIRMD-TKRLCELTSAADSLQLKPLVDLTSRALAR 129 (250)
Q Consensus 94 ~eFl~id-~~~L~eLi~AAnyL~I~~Lldl~c~~VA~ 129 (250)
.++ .+.+.+++.+|++|+|+.|.+.|+..+..
T Consensus 77 ----~~~~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~ 109 (111)
T PF00651_consen 77 ----EINSDENVEELLELADKLQIPELKKACEKFLQE 109 (111)
T ss_dssp ----EEE-TTTHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred ----cCCHHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 233 67799999999999999999999998764
No 9
>PHA02790 Kelch-like protein; Provisional
Probab=98.61 E-value=8e-08 Score=93.49 Aligned_cols=125 Identities=11% Similarity=0.066 Sum_probs=95.7
Q ss_pred EEeCCCCEEEecHHH-HhHcHHHHHHHhhcCCCCCCCcccccC-CCCCHHHHHHHHHHHHhccCCCCCchhcchhhhhhh
Q 025625 20 LQTADGSIQQVEQEV-AMFCPLICQEVIQKGMGSSKNYAISLP-QRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFI 97 (250)
Q Consensus 20 L~SsDG~~f~V~~~a-a~~S~~I~~ml~~~~~~~~~~~~IpLp-~~Vss~iL~kIIeyC~~Hk~~~~s~~~i~~wD~eFl 97 (250)
+.-.-|..|.+++.+ |..|++++.|+. .++.+. ...|.+. .+|+..+|+.||+|++.-+ +
T Consensus 25 ~~~~~~~~~~~HR~VLAa~S~YFraMF~-~~~~Es-~~~v~~~~~~v~~~~l~~lldy~YTg~----------------l 86 (480)
T PHA02790 25 IIEAIGGNIIVNSTILKKLSPYFRTHLR-QKYTKN-KDPVTRVCLDLDIHSLTSIVIYSYTGK----------------V 86 (480)
T ss_pred EEEEcCcEEeeehhhhhhcCHHHHHHhc-CCcccc-ccceEEEecCcCHHHHHHHHHhheeee----------------E
Confidence 334568899999999 678999999986 344433 2234431 2699999999999997665 5
Q ss_pred cCChHHHHhhhhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhcccccccCchHHHHHHHHHHHH
Q 025625 98 RMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKK 177 (250)
Q Consensus 98 ~id~~~L~eLi~AAnyL~I~~Lldl~c~~VA~~IkGKT~eEIR~~FgI~~D~T~EEe~ei~~~~~~~p~~~~~~~l~~~~ 177 (250)
.++.+.+.+|+.||++|+|+.+++.||+++.. .+...| |..++.......|.+|....
T Consensus 87 ~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~------------~l~~~N----------Cl~i~~~A~~y~~~~L~~~a 144 (480)
T PHA02790 87 YIDSHNVVNLLRASILTSVEFIIYTCINFILR------------DFRKEY----------CVECYMMGIEYGLSNLLCHT 144 (480)
T ss_pred EEecccHHHHHHHHHHhChHHHHHHHHHHHHh------------hCCcch----------HHHHHHHHHHhCHHHHHHHH
Confidence 67788899999999999999999999999987 445555 66666667777777777777
Q ss_pred HHHHHHH
Q 025625 178 RKELKER 184 (250)
Q Consensus 178 ~~~~~~~ 184 (250)
++++.+.
T Consensus 145 ~~fi~~n 151 (480)
T PHA02790 145 KDFIAKH 151 (480)
T ss_pred HHHHHHh
Confidence 7776554
No 10
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.50 E-value=3.9e-07 Score=90.86 Aligned_cols=154 Identities=20% Similarity=0.251 Sum_probs=113.3
Q ss_pred ccEEEEeCCCCEEEecHHH-HhHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCchhcchhhh
Q 025625 16 SYIWLQTADGSIQQVEQEV-AMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDE 94 (250)
Q Consensus 16 ~~I~L~SsDG~~f~V~~~a-a~~S~~I~~ml~~~~~~~~~~~~IpLp~~Vss~iL~kIIeyC~~Hk~~~~s~~~i~~wD~ 94 (250)
..++|.-.+ +.|.+++.+ |.+|++++.|+.. +..+.....|.|. .|++.+|..+++|++...
T Consensus 37 cDv~L~v~~-~~~~aHR~VLAa~S~YFraMFt~-~l~e~~~~~i~l~-~v~~~~l~~ll~y~Yt~~-------------- 99 (571)
T KOG4441|consen 37 CDVTLLVGD-REFPAHRVVLAACSPYFRAMFTS-GLKESKQKEINLE-GVDPETLELLLDYAYTGK-------------- 99 (571)
T ss_pred ceEEEEECC-eeechHHHHHHhccHHHHHHhcC-CcccccceEEEEe-cCCHHHHHHHHHHhhcce--------------
Confidence 456665555 999999999 5789999999873 4444456789998 799999999999999887
Q ss_pred hhhcCChHHHHhhhhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhcccccccCchHHHHHHHHH
Q 025625 95 KFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLY 174 (250)
Q Consensus 95 eFl~id~~~L~eLi~AAnyL~I~~Lldl~c~~VA~~IkGKT~eEIR~~FgI~~D~T~EEe~ei~~~~~~~p~~~~~~~l~ 174 (250)
+.++.+.+-+|+.||++|+|..+++.||..+.. .+..+| |..+........|.+|.
T Consensus 100 --i~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~------------~l~~~N----------clgi~~~a~~~~~~~L~ 155 (571)
T KOG4441|consen 100 --LEISEDNVQELLEAASLLQIPEVVDACCEFLES------------QLDPSN----------CLGIRRFAELHSCTELL 155 (571)
T ss_pred --EEechHhHHHHHHHHHHhhhHHHHHHHHHHHHh------------cCCHHH----------HHHHHHHHHhcCcHHHH
Confidence 568899999999999999999999999999976 333333 44344455666677777
Q ss_pred HHHHHHHHHHhhhccccchhhhccccChHHHHhhhcCCC
Q 025625 175 AKKRKELKEREKLKNVESEEERVDERSVDDLLQFINGGE 213 (250)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 213 (250)
...+.++...-. .+. ..+.+-+.|+++|.+.|.-++
T Consensus 156 ~~a~~~i~~~F~--~v~-~~eefl~L~~~~l~~ll~~d~ 191 (571)
T KOG4441|consen 156 EVADEYILQHFA--EVS-KTEEFLLLSLEELIGLLSSDD 191 (571)
T ss_pred HHHHHHHHHHHH--HHh-ccHHhhCCCHHHHHhhccccC
Confidence 776666655421 111 133455677788887777443
No 11
>PHA03098 kelch-like protein; Provisional
Probab=98.31 E-value=3.2e-06 Score=82.52 Aligned_cols=99 Identities=14% Similarity=0.179 Sum_probs=81.2
Q ss_pred ccEEEEe-CCCCEEEecHHHH-hHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCchhcchhh
Q 025625 16 SYIWLQT-ADGSIQQVEQEVA-MFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFD 93 (250)
Q Consensus 16 ~~I~L~S-sDG~~f~V~~~aa-~~S~~I~~ml~~~~~~~~~~~~IpLp~~Vss~iL~kIIeyC~~Hk~~~~s~~~i~~wD 93 (250)
..++|.- .+|+.|.+++.++ ..|++++.|+... +. ...|.|+ . +..+|+.|++|++...
T Consensus 10 ~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~-~~---~~~i~l~-~-~~~~~~~~l~y~Ytg~------------- 70 (534)
T PHA03098 10 CDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNN-FK---ENEINLN-I-DYDSFNEVIKYIYTGK------------- 70 (534)
T ss_pred CCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCC-CC---CceEEec-C-CHHHHHHHHHHhcCCc-------------
Confidence 5666664 6899999999995 5799999988632 22 4668997 6 9999999999998875
Q ss_pred hhhhcCChHHHHhhhhhcccCCCchHHHHHHHHHHHHHhCCCH
Q 025625 94 EKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTP 136 (250)
Q Consensus 94 ~eFl~id~~~L~eLi~AAnyL~I~~Lldl~c~~VA~~IkGKT~ 136 (250)
+.++.+.+.+|+.||++|+|+.|.++|++++...+.-.+.
T Consensus 71 ---~~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~nc 110 (534)
T PHA03098 71 ---INITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNNC 110 (534)
T ss_pred ---eEEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhHH
Confidence 4567788999999999999999999999999876654433
No 12
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=98.16 E-value=4.2e-06 Score=60.31 Aligned_cols=85 Identities=22% Similarity=0.258 Sum_probs=67.2
Q ss_pred eCCCCEEEecHHHHh-HcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCchhcchhhhhhhcCC
Q 025625 22 TADGSIQQVEQEVAM-FCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMD 100 (250)
Q Consensus 22 SsDG~~f~V~~~aa~-~S~~I~~ml~~~~~~~~~~~~IpLp~~Vss~iL~kIIeyC~~Hk~~~~s~~~i~~wD~eFl~id 100 (250)
..+|..|.|++.++. .|++++.|+.... .......|.++ +++..+++.|++|++... +.++
T Consensus 5 ~v~~~~~~~h~~iL~~~s~~f~~~~~~~~-~~~~~~~i~l~-~~~~~~f~~~l~~ly~~~----------------~~~~ 66 (90)
T smart00225 5 VVGGKKFKAHKAVLAACSPYFKALFSGDF-KESKKSEIYLD-DVSPEDFRALLEFLYTGK----------------LDLP 66 (90)
T ss_pred EECCEEEehHHHHHhhcCHHHHHHHcCCC-ccCCCCEEEec-CCCHHHHHHHHHeecCce----------------eecC
Confidence 457799999999965 5899999875332 21135678998 799999999999998764 2344
Q ss_pred hHHHHhhhhhcccCCCchHHHHHH
Q 025625 101 TKRLCELTSAADSLQLKPLVDLTS 124 (250)
Q Consensus 101 ~~~L~eLi~AAnyL~I~~Lldl~c 124 (250)
...+.+|+.+|++++++.|.+.|+
T Consensus 67 ~~~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 67 EENVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred HHHHHHHHHHHHHHCcHHHHhhhC
Confidence 557899999999999999999874
No 13
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=94.61 E-value=0.18 Score=49.07 Aligned_cols=107 Identities=17% Similarity=0.199 Sum_probs=76.4
Q ss_pred ccEEEEeCCCCEEEecHHH-HhHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCC--C-------
Q 025625 16 SYIWLQTADGSIQQVEQEV-AMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGS--S------- 85 (250)
Q Consensus 16 ~~I~L~SsDG~~f~V~~~a-a~~S~~I~~ml~~~~~~~~~~~~IpLp~~Vss~iL~kIIeyC~~Hk~~~~--s------- 85 (250)
..|+++-.| ..|..++-+ |..|.+++.|+- .|+.++....|||. .-++..+..++.|.+.-+..-. .
T Consensus 45 ~DVtfvve~-~rfpAHRvILAaRs~yFRAlLY-gGm~Es~q~~ipLq-~t~~eAF~~lLrYiYtg~~~l~~~~ed~lld~ 121 (620)
T KOG4350|consen 45 SDVTFVVED-TRFPAHRVILAARSSYFRALLY-GGMQESHQQLIPLQ-ETNSEAFRALLRYIYTGKIDLAGVEEDILLDY 121 (620)
T ss_pred cceEEEEec-cccchhhhhHHHHHHHHHHHHh-hhhhhhhhcccccc-cccHHHHHHHHHHHhhcceecccchHHHHHHH
Confidence 467777666 889999888 567999998754 56655556789997 6779999999999988764311 0
Q ss_pred ------------chhcchhhhhhhcCChHHHHhhhhhcccCCCchHHHHHHHHH
Q 025625 86 ------------NKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRAL 127 (250)
Q Consensus 86 ------------~~~i~~wD~eFl~id~~~L~eLi~AAnyL~I~~Lldl~c~~V 127 (250)
...++++-.++ +..+.+|-++.||.+.+...|.++||.++
T Consensus 122 LslAh~Ygf~~Le~aiSeYl~~i--L~~~NvCmifdaA~ly~l~~Lt~~C~mfm 173 (620)
T KOG4350|consen 122 LSLAHRYGFIQLETAISEYLKEI--LKNENVCMIFDAAYLYQLTDLTDYCMMFM 173 (620)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHH--HcccceeeeeeHHHHhcchHHHHHHHHHH
Confidence 01223333333 35566888888888888888888888555
No 14
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=93.80 E-value=0.1 Score=50.50 Aligned_cols=123 Identities=13% Similarity=0.091 Sum_probs=88.8
Q ss_pred cEEEEeCCCCEEEecHHHHhHcHHHHHHHhhcCCCCCC---CcccccCCCCCHHHHHHHHHHHHhccCCCCCchhcchhh
Q 025625 17 YIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSK---NYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFD 93 (250)
Q Consensus 17 ~I~L~SsDG~~f~V~~~aa~~S~~I~~ml~~~~~~~~~---~~~IpLp~~Vss~iL~kIIeyC~~Hk~~~~s~~~i~~wD 93 (250)
.|.| ..=|.+.+++.--+.||+++..|+...--.... .-.||=| +|+...|.-++-=+++..
T Consensus 71 Dv~l-~alg~eWrlHk~yL~QS~yf~smf~Gtw~es~~~iIqleI~Dp-~Id~~al~~a~gsLY~dE------------- 135 (488)
T KOG4682|consen 71 DVIL-EALGFEWRLHKPYLFQSEYFKSMFSGTWKESSMNIIQLEIPDP-NIDVVALQVAFGSLYRDE------------- 135 (488)
T ss_pred ceeh-hhccceeeeeeeeeeccHHHHHHhccccChhhCceEEEEcCCC-cccHHHHHHHHhhhhhhh-------------
Confidence 4444 345888999988899999999998644221111 1246667 799999998887766654
Q ss_pred hhhhcCChHHHHhhhhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhccccc
Q 025625 94 EKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKN 160 (250)
Q Consensus 94 ~eFl~id~~~L~eLi~AAnyL~I~~Lldl~c~~VA~~IkGKT~eEIR~~FgI~~D~T~EEe~ei~~~ 160 (250)
+.++.+.+..++.||.+|..++|.+-|...+-..| +|+-+..++....-+-.|.-.+-+.+
T Consensus 136 ---veI~l~dv~gvlAaA~~lqldgl~qrC~evMie~l---spkta~~yYea~ckYgle~vk~kc~e 196 (488)
T KOG4682|consen 136 ---VEIKLSDVVGVLAAACLLQLDGLIQRCGEVMIETL---SPKTACGYYEAACKYGLESVKKKCLE 196 (488)
T ss_pred ---eeccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc---ChhhhhHhhhhhhhhhhHHHHHHHHH
Confidence 56899999999999999999999999987765554 45555666666666655555554444
No 15
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=93.18 E-value=0.42 Score=42.95 Aligned_cols=103 Identities=23% Similarity=0.272 Sum_probs=77.2
Q ss_pred CccEEEEeCCCCEEEecHHHHh-HcHHHHHHHhhcC-CCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCchhcchh
Q 025625 15 KSYIWLQTADGSIQQVEQEVAM-FCPLICQEVIQKG-MGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSF 92 (250)
Q Consensus 15 ~~~I~L~SsDG~~f~V~~~aa~-~S~~I~~ml~~~~-~~~~~~~~IpLp~~Vss~iL~kIIeyC~~Hk~~~~s~~~i~~w 92 (250)
...|+| ---|.+|.-+...+. +.+.++.|+...- ...+..+.|=| +-++.-+..|+.|++--... +|
T Consensus 4 ~~~vkL-nvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI--DRSpKHF~~ILNfmRdGdv~------LP-- 72 (230)
T KOG2716|consen 4 SETVKL-NVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI--DRSPKHFDTILNFMRDGDVD------LP-- 72 (230)
T ss_pred cceEEE-ecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe--cCChhHHHHHHHhhhccccc------Cc--
Confidence 345555 456889998888864 6788888876431 12223455767 47999999999999854322 22
Q ss_pred hhhhhcCChHHHHhhhhhcccCCCchHHHHHHHHHHHHHhCC
Q 025625 93 DEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGK 134 (250)
Q Consensus 93 D~eFl~id~~~L~eLi~AAnyL~I~~Lldl~c~~VA~~IkGK 134 (250)
-+...|-+|+.-|.|-.+.+|+++|..+++..+.+.
T Consensus 73 ------e~~kel~El~~EA~fYlL~~Lv~~C~~~i~~~~~~~ 108 (230)
T KOG2716|consen 73 ------ESEKELKELLREAEFYLLDGLVELCQSAIARLIRGY 108 (230)
T ss_pred ------cchHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccCc
Confidence 257889999999999999999999999999988875
No 16
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=89.34 E-value=0.63 Score=48.88 Aligned_cols=110 Identities=19% Similarity=0.188 Sum_probs=75.5
Q ss_pred EEEEeCCCCEEEecHHHHh-HcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCchhcchhhhhh
Q 025625 18 IWLQTADGSIQQVEQEVAM-FCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKF 96 (250)
Q Consensus 18 I~L~SsDG~~f~V~~~aa~-~S~~I~~ml~~~~~~~~~~~~IpLp~~Vss~iL~kIIeyC~~Hk~~~~s~~~i~~wD~eF 96 (250)
..+...||.+|..+.-.+. .+.++..|+.-..+..+.-.+--.| ++++.|+-|+.|++.--. ..|
T Consensus 713 ~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p--~~~e~m~ivLdylYs~d~------------~~~ 778 (1267)
T KOG0783|consen 713 TVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSP--LTVEHMSIVLDYLYSDDK------------VEL 778 (1267)
T ss_pred EEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCc--chHHHHHHHHHHHHccch------------HHH
Confidence 3444569999998877743 4677777765443321111112233 679999999999874321 223
Q ss_pred hc--CChHHHHhhhhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHh
Q 025625 97 IR--MDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRE 141 (250)
Q Consensus 97 l~--id~~~L~eLi~AAnyL~I~~Lldl~c~~VA~~IkGKT~eEIR~ 141 (250)
++ ...+-+|+++..|+-|=|..|-++|-+.+-+.+.=|+..++-+
T Consensus 779 ~k~~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~lle 825 (1267)
T KOG0783|consen 779 FKDLKESDFMFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLE 825 (1267)
T ss_pred HhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHH
Confidence 33 3456699999999999999999999999999888777655543
No 17
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=87.03 E-value=0.68 Score=40.35 Aligned_cols=54 Identities=26% Similarity=0.423 Sum_probs=36.3
Q ss_pred hhhhhhcCChHHHHhhhh--------hccc--CCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCC
Q 025625 92 FDEKFIRMDTKRLCELTS--------AADS--LQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 150 (250)
Q Consensus 92 wD~eFl~id~~~L~eLi~--------AAny--L~I~~Lldl~c~~VA~~IkGKT~eEIR~~FgI~~D~T 150 (250)
|+..=++-....+|+.+. |||. =+|--|.++||+.. |.-|.+||+.||||+||.
T Consensus 137 ~el~k~~e~dpqv~~k~~~~~K~~~eaanrwtDnI~il~dy~~rkf-----~~e~nqi~~~fgIPed~d 200 (203)
T KOG3433|consen 137 WELAKIQETDPQVFEKKVHLEKTMAEAANRWTDNIFILIDYLYRKF-----GLEPNQIRKEFGIPEDFD 200 (203)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhc-----CCCHHHHhHhcCCCcccc
Confidence 444433444455555554 4443 26777788887654 789999999999999874
No 18
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=82.90 E-value=0.96 Score=39.32 Aligned_cols=32 Identities=34% Similarity=0.635 Sum_probs=25.2
Q ss_pred CCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCCh
Q 025625 115 QLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTE 151 (250)
Q Consensus 115 ~I~~Lldl~c~~VA~~IkGKT~eEIR~~FgI~~D~T~ 151 (250)
+|.-|.++.|+.. |..|+|||+.||||.||..
T Consensus 174 nI~ilidy~c~kf-----~~~~~qir~~fgIPedld~ 205 (209)
T COG5124 174 NIEILIDYLCKKF-----FLKPEQIRKEFGIPEDLDE 205 (209)
T ss_pred hHHHHHHHHHHHc-----CCCHHHHHHhcCCCcchhh
Confidence 5666777777543 6789999999999998753
No 19
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=82.74 E-value=2.3 Score=39.96 Aligned_cols=92 Identities=8% Similarity=0.075 Sum_probs=64.5
Q ss_pred CCEEEecHHHH-hHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCchhcchhhhhhhcCChHH
Q 025625 25 GSIQQVEQEVA-MFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKR 103 (250)
Q Consensus 25 G~~f~V~~~aa-~~S~~I~~ml~~~~~~~~~~~~IpLp~~Vss~iL~kIIeyC~~Hk~~~~s~~~i~~wD~eFl~id~~~ 103 (250)
-+.|..++..+ ...++++..+...-.+.....+|+|...-+-.|++=+++|++... -.++.+.
T Consensus 13 ~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~----------------p~l~~~N 76 (317)
T PF11822_consen 13 KRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEP----------------PSLTPSN 76 (317)
T ss_pred ceeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCC----------------CcCCcCc
Confidence 36788888886 457899887642000111344566654567778888888887721 1357788
Q ss_pred HHhhhhhcccCCCchHHHHHHHHHHHHHh
Q 025625 104 LCELTSAADSLQLKPLVDLTSRALARIIE 132 (250)
Q Consensus 104 L~eLi~AAnyL~I~~Lldl~c~~VA~~Ik 132 (250)
+..|+.-|+||+|++|++.|..++...+.
T Consensus 77 vvsIliSS~FL~M~~Lve~cl~y~~~~~~ 105 (317)
T PF11822_consen 77 VVSILISSEFLQMESLVEECLQYCHDHMS 105 (317)
T ss_pred EEEeEehhhhhccHHHHHHHHHHHHHhHH
Confidence 89999999999999999999988865443
No 20
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=75.96 E-value=1.5 Score=32.96 Aligned_cols=83 Identities=19% Similarity=0.221 Sum_probs=53.5
Q ss_pred CCCEEEecHHHHhH--cHHHHHHHhhc--CCCCCCCcccccCCCCCHHHHHHHHHHHHhc-cCCCCCchhcchhhhhhhc
Q 025625 24 DGSIQQVEQEVAMF--CPLICQEVIQK--GMGSSKNYAISLPQRVNPAMLSLILDYCRFH-QVPGSSNKERKSFDEKFIR 98 (250)
Q Consensus 24 DG~~f~V~~~aa~~--S~~I~~ml~~~--~~~~~~~~~IpLp~~Vss~iL~kIIeyC~~H-k~~~~s~~~i~~wD~eFl~ 98 (250)
-|+.|.++...+.. ...+..++... .........+=+ +-++..++.|+.|++.. .-..
T Consensus 6 GG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi--DRdp~~F~~IL~ylr~~~~l~~--------------- 68 (94)
T PF02214_consen 6 GGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI--DRDPELFEYILNYLRTGGKLPI--------------- 68 (94)
T ss_dssp TTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE--SS-HHHHHHHHHHHHHTSSB-----------------
T ss_pred CCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe--ccChhhhhHHHHHHhhcCccCC---------------
Confidence 58999999999763 24565555532 111113455666 47999999999999985 2110
Q ss_pred CChHHHHhhhhhcccCCCchH-HHHH
Q 025625 99 MDTKRLCELTSAADSLQLKPL-VDLT 123 (250)
Q Consensus 99 id~~~L~eLi~AAnyL~I~~L-ldl~ 123 (250)
-+...+..|...|.|.+|..| ++.|
T Consensus 69 ~~~~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 69 PDEICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp -TTS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred CCchhHHHHHHHHHHcCCCccccCCC
Confidence 134457788999999999998 6654
No 21
>PF07928 Vps54: Vps54-like protein; InterPro: IPR012501 This family contains various proteins that are homologues of the yeast Vps54 protein, such as the rat homologue (Q9JMK8 from SWISSPROT), the human homologue (Q86YF7 from SWISSPROT), and the mouse homologue (Q8R3X1 from SWISSPROT). In yeast, Vps54 associates with Vps52 and Vps53 proteins to form a trimolecular complex that is involved in protein transport between Golgi, endosomal, and vacuolar compartments []. All Vps54 homologues contain a coiled coil region (not found in the region featured in this family) and multiple dileucine motifs []. ; GO: 0042147 retrograde transport, endosome to Golgi; PDB: 3N1E_B 3N1B_B.
Probab=70.60 E-value=1.4 Score=36.36 Aligned_cols=75 Identities=21% Similarity=0.366 Sum_probs=0.0
Q ss_pred CCCEEEecHHHHhHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCchhcchhhhhhhcCChHH
Q 025625 24 DGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKR 103 (250)
Q Consensus 24 DG~~f~V~~~aa~~S~~I~~ml~~~~~~~~~~~~IpLp~~Vss~iL~kIIeyC~~Hk~~~~s~~~i~~wD~eFl~id~~~ 103 (250)
||+.|.|...+...-+.+.+.+. ....+| .+.++++.++++|.+.. +..
T Consensus 1 d~e~f~vv~s~l~ll~~l~~Y~~---------~~~~~P-~~a~di~~~l~elLk~f---------------------NSr 49 (135)
T PF07928_consen 1 DNEKFVVVGSALLLLKMLSDYLQ---------LASNFP-SLAPDILSRLLELLKLF---------------------NSR 49 (135)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCceecHHHHHHHHHHHHHHHH---------HHHHCc-hhHHHHHHHHHHHHHHH---------------------HHH
Confidence 67788888777766666654321 123466 57888888888887554 445
Q ss_pred HHhhhhhcccCCCchHHHHHHHHHHH
Q 025625 104 LCELTSAADSLQLKPLVDLTSRALAR 129 (250)
Q Consensus 104 L~eLi~AAnyL~I~~Lldl~c~~VA~ 129 (250)
.++|+..|-...--+|-..+.+.+|-
T Consensus 50 ~~qlVLGAGA~~~agLK~IT~KhLAL 75 (135)
T PF07928_consen 50 CCQLVLGAGAMRSAGLKTITAKHLAL 75 (135)
T ss_dssp --------------------------
T ss_pred HHHHHhccchhhccCcCcchHHHHHH
Confidence 78899999888888888887777664
No 22
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=57.57 E-value=44 Score=33.38 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=69.7
Q ss_pred CEEEecHHHHh-HcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCC-CCC----------chhcchh-
Q 025625 26 SIQQVEQEVAM-FCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVP-GSS----------NKERKSF- 92 (250)
Q Consensus 26 ~~f~V~~~aa~-~S~~I~~ml~~~~~~~~~~~~IpLp~~Vss~iL~kIIeyC~~Hk~~-~~s----------~~~i~~w- 92 (250)
+++..++-+.. -|.++..|+- .++.......|.+| .|....+...+.|++-.... .+. ...++..
T Consensus 129 q~~paHk~vla~gS~VFdaMf~-g~~a~~~s~ei~lp-dvepaaFl~~L~flYsdev~~~~dtvi~tl~~AkKY~VpaLe 206 (521)
T KOG2075|consen 129 QRIPAHKLVLADGSDVFDAMFY-GGLAEDASLEIRLP-DVEPAAFLAFLRFLYSDEVKLAADTVITTLYAAKKYLVPALE 206 (521)
T ss_pred cccchhhhhhhcchHHHHHHhc-cCcccccCceeecC-CcChhHhHHHHHHHhcchhhhhHHHHHHHHHHHHHhhhHHHH
Confidence 77778888754 5788888864 33433346789999 89999999988887653221 110 0111221
Q ss_pred --hhhhhc---CChHHHHhhhhhcccCCCchHHHHHHHHHHHH
Q 025625 93 --DEKFIR---MDTKRLCELTSAADSLQLKPLVDLTSRALARI 130 (250)
Q Consensus 93 --D~eFl~---id~~~L~eLi~AAnyL~I~~Lldl~c~~VA~~ 130 (250)
--+|++ ++...+..|-..|..++=+.|+..|...|+.-
T Consensus 207 r~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~ 249 (521)
T KOG2075|consen 207 RQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKS 249 (521)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhH
Confidence 223554 56777888888799999999999999888753
No 23
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=56.45 E-value=11 Score=32.78 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=30.6
Q ss_pred HHHhhhhhcccC--CCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCC
Q 025625 103 RLCELTSAADSL--QLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 150 (250)
Q Consensus 103 ~L~eLi~AAnyL--~I~~Lldl~c~~VA~~IkGKT~eEIR~~FgI~~D~T 150 (250)
.+..+..|||.- +|..|..+|+.. -|.+.++||+.||||+||.
T Consensus 143 ~~~~~~~~anrwTDNI~~l~~~~~~k-----~~~~~~~i~k~f~Ip~d~d 187 (188)
T PF03962_consen 143 EIKIAKEAANRWTDNIFSLKSYLKKK-----FGMDEEDIRKEFGIPEDFD 187 (188)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHh-----cCCCHHHHHHHcCCccccC
Confidence 344445566654 566666666653 3889999999999999874
No 24
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=50.85 E-value=19 Score=32.83 Aligned_cols=93 Identities=18% Similarity=0.199 Sum_probs=63.7
Q ss_pred CCccEEEEeCCCCEEEecHHHH--hH-cHHHHHHHhhcCCCC--CCCcccccCCCCCHHHHHHHHHHHHhccCCCCCchh
Q 025625 14 MKSYIWLQTADGSIQQVEQEVA--MF-CPLICQEVIQKGMGS--SKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKE 88 (250)
Q Consensus 14 ~~~~I~L~SsDG~~f~V~~~aa--~~-S~~I~~ml~~~~~~~--~~~~~IpLp~~Vss~iL~kIIeyC~~Hk~~~~s~~~ 88 (250)
++++|+| --.|+.|.-..+.. +. -.++..|+.+.+-+. +....+-| +-++.-++-|+.|+.+-.-+
T Consensus 7 ~~~~vrl-nigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI--DRsp~yFepIlNyLr~Gq~~------ 77 (302)
T KOG1665|consen 7 LSSMVRL-NIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI--DRSPKYFEPILNYLRDGQIP------ 77 (302)
T ss_pred hhhhhee-ecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE--ccCchhhHHHHHHHhcCcee------
Confidence 3556666 34677776544442 22 346677887776432 23445666 47999999999999887632
Q ss_pred cchhhhhhhcCChHHHHhhhhhcccCCCchHHHHHH
Q 025625 89 RKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTS 124 (250)
Q Consensus 89 i~~wD~eFl~id~~~L~eLi~AAnyL~I~~Lldl~c 124 (250)
..+...+..++.+|.|.+|-+|.+-.-
T Consensus 78 ---------~~s~i~~lgvLeeArff~i~sL~~hle 104 (302)
T KOG1665|consen 78 ---------SLSDIDCLGVLEEARFFQILSLKDHLE 104 (302)
T ss_pred ---------ecCCccHHHHHHHhhHHhhHhHHhHHh
Confidence 234556899999999999999988543
No 25
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=44.71 E-value=54 Score=32.08 Aligned_cols=109 Identities=14% Similarity=0.067 Sum_probs=72.9
Q ss_pred EEeCCCCEEEecHHHHhHcHHHHHHHhhcCCCCCCCc---ccccCCCCCHHHHHHHHHHHHhccCCCCC-----------
Q 025625 20 LQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNY---AISLPQRVNPAMLSLILDYCRFHQVPGSS----------- 85 (250)
Q Consensus 20 L~SsDG~~f~V~~~aa~~S~~I~~ml~~~~~~~~~~~---~IpLp~~Vss~iL~kIIeyC~~Hk~~~~s----------- 85 (250)
+++-....++++.+.+..+.++..|+..+-...+.+. ...|| +....+.+.++.|+..|+.+-+-
T Consensus 295 iql~~~~RyP~hla~i~R~eyfk~mf~g~f~e~s~n~~~p~lslp-~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad 373 (516)
T KOG0511|consen 295 IQLPEEDRYPAHLARILRVEYFKSMFVGDFIESSVNDTRPGLSLP-SLADVVVEIDLRNLYCDQTDIIFDVASDVLLFAD 373 (516)
T ss_pred ccccccccccHHHHHHHHHHHHHHHhccchhhhcCCccccccccc-hHHHHHHHHHHHHhhcccccchHHHHhhHHHHhh
Confidence 3344455688999999889999998865432212233 35678 78899999999999999875310
Q ss_pred --------------chhcchhhhhhhcCChHHHHhhhhhcccCCCchHHHHHHHHHHHHHh
Q 025625 86 --------------NKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIE 132 (250)
Q Consensus 86 --------------~~~i~~wD~eFl~id~~~L~eLi~AAnyL~I~~Lldl~c~~VA~~Ik 132 (250)
...+..| .+| +|.-.+++++.-|--+....|=.++..++|+.+.
T Consensus 374 ~lal~~dr~Lkt~as~~itq~-~e~--id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~ 431 (516)
T KOG0511|consen 374 KLALADDRLLKTAASAEITQW-LEL--IDMYGVLDILEYCWDLVACRLEQFAETHEARHLL 431 (516)
T ss_pred HhhhhhhhhhhhhhhHHHHHH-HHH--HHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 0123344 112 3444577777778778888888888888887554
No 26
>PF06375 BLVR: Bovine leukaemia virus receptor (BLVR); InterPro: IPR010474 Bovine leukemia virus (BLV) is one of the most common infectious cattle viruses, with between 30 and 40% of cows in the United States being infected. It is closely related to the human T-cell leukaemia virus type 1 (HTLV-1) and has highly conserved envelope glycoprotein functional domains []. BLV is an oncogenic C-type retrovirus, which results in the animals developing a malignant lymphoma. BLV, like the human and simian T cell leukaemia viruses, is a deltaretrovirus. 182 residues at the amino-terminal of the BLV envelope glycoprotein surface unit encompass the receptor-binding domain. The metabolic activity in B cells, T cells, and thymocytes is indicated by the expression of the BLV-binding receptor []. A candidate gene of the receptor (BLVR) is related, but unique, to a gene family of the delta subunit of the adaptor protein (AP) complex 3, AP-3 []. The AP-3 complex is not clathrin-associated but is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes. ; PDB: 4AFI_B.
Probab=40.23 E-value=9.4 Score=32.36 Aligned_cols=9 Identities=33% Similarity=0.121 Sum_probs=0.0
Q ss_pred ChHhhhccc
Q 025625 150 TEEEKLEPL 158 (250)
Q Consensus 150 T~EEe~ei~ 158 (250)
|+||.+..+
T Consensus 2 ~eEEl~rrR 10 (154)
T PF06375_consen 2 DEEELERRR 10 (154)
T ss_dssp ---------
T ss_pred CHHHHHHHH
Confidence 444444433
No 27
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=39.90 E-value=40 Score=23.25 Aligned_cols=40 Identities=35% Similarity=0.431 Sum_probs=24.3
Q ss_pred hCCCHHHHHhHcCCCCCCChHhhhcccccccCchHHHHHHHHHHHHHHHHHHHh
Q 025625 132 EGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKERE 185 (250)
Q Consensus 132 kGKT~eEIR~~FgI~~D~T~EEe~ei~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 185 (250)
-|-|-+|||+++.+..+ ..+.......+.+.++.++.++-
T Consensus 13 lGfsL~eI~~~l~l~~~--------------~~~~~~~~~~~l~~~~~~i~~~i 52 (65)
T PF09278_consen 13 LGFSLEEIRELLELYDQ--------------GDPPCADRRALLEEKLEEIEEQI 52 (65)
T ss_dssp TT--HHHHHHHHHHCCS--------------HCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHhccCC--------------CCCCHHHHHHHHHHHHHHHHHHH
Confidence 48999999999988764 12233334455566777766653
No 28
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=37.81 E-value=28 Score=28.51 Aligned_cols=45 Identities=27% Similarity=0.501 Sum_probs=23.5
Q ss_pred HHhCCCHHHHHhHcCCCCCCChHhhhcccccc--cCch----HHHHHHHHH
Q 025625 130 IIEGKTPEEIREIFHLPDDLTEEEKLEPLKNT--TDDP----RIRLLNRLY 174 (250)
Q Consensus 130 ~IkGKT~eEIR~~FgI~~D~T~EEe~ei~~~~--~~~p----~~~~~~~l~ 174 (250)
...|.|.+|-++++|++...++||-.+..... .+|| +|.+=-+.|
T Consensus 51 ~~~~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfYLQSKV~ 101 (127)
T PF03656_consen 51 NSKGMTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFYLQSKVF 101 (127)
T ss_dssp ------HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHHHHHHH
T ss_pred hcCCCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHHHHHHHH
Confidence 45689999999999999999999877755543 2354 555555544
No 29
>PRK05365 malonic semialdehyde reductase; Provisional
Probab=36.66 E-value=19 Score=30.54 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=26.9
Q ss_pred hhhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCC
Q 025625 107 LTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 150 (250)
Q Consensus 107 Li~AAnyL~I~~Lldl~c~~VA~~IkGKT~eEIR~~FgI~~D~T 150 (250)
|++||..|++.. .++.|-..+.+++.|||++++.
T Consensus 131 l~LaA~~~Glgs----------~~~~g~~~~~v~~~l~ip~~~~ 164 (195)
T PRK05365 131 LILAARALGLDA----------GPMSGFDAAAVDAEFFAGTTWK 164 (195)
T ss_pred HHHHHHHcCCcc----------CCccccCHHHHHHHhCCCCCee
Confidence 888888888876 2456778899999999986543
No 30
>cd02148 Nitroreductase_5 Nitroreductase-like family 5. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=32.82 E-value=22 Score=29.81 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=26.8
Q ss_pred hhhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCC
Q 025625 107 LTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 150 (250)
Q Consensus 107 Li~AAnyL~I~~Lldl~c~~VA~~IkGKT~eEIR~~FgI~~D~T 150 (250)
|++||.-|++.. .+|.|-..+++++.|||++++.
T Consensus 124 l~LaA~~lGlgs----------~~~~g~d~~~~~~~L~lp~~~~ 157 (185)
T cd02148 124 FILAARALGLDA----------GPMSGFDAAAVDAEFFADTRWR 157 (185)
T ss_pred HHHHHHHcCCCc----------CCCcccCHHHHHHHhCCCCCeE
Confidence 888888888775 2556778899999999987653
No 31
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=31.41 E-value=44 Score=25.13 Aligned_cols=44 Identities=16% Similarity=0.281 Sum_probs=28.0
Q ss_pred CchHHHHHHHHHHHHH-hCC-CHHHHHhHcC----CCCCCChHhhhcccc
Q 025625 116 LKPLVDLTSRALARII-EGK-TPEEIREIFH----LPDDLTEEEKLEPLK 159 (250)
Q Consensus 116 I~~Lldl~c~~VA~~I-kGK-T~eEIR~~Fg----I~~D~T~EEe~ei~~ 159 (250)
|..|+.+..++.++-= .|. +.+|+|.++. +.+.+|++|-.+++.
T Consensus 9 ~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~ 58 (88)
T cd05029 9 IGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLME 58 (88)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 4456666666666311 333 8899998883 455678877777655
No 32
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.39 E-value=20 Score=36.62 Aligned_cols=15 Identities=20% Similarity=0.129 Sum_probs=6.0
Q ss_pred HcCCCCCCChHhhhc
Q 025625 142 IFHLPDDLTEEEKLE 156 (250)
Q Consensus 142 ~FgI~~D~T~EEe~e 156 (250)
-+..+.|-..||.-.
T Consensus 24 ~~d~esded~e~s~~ 38 (665)
T KOG2422|consen 24 ANDMESDEDTEESGQ 38 (665)
T ss_pred hccccccccchhccc
Confidence 344444444443333
No 33
>PRK12540 RNA polymerase sigma factor; Provisional
Probab=30.84 E-value=1.5e+02 Score=24.83 Aligned_cols=18 Identities=17% Similarity=-0.012 Sum_probs=15.3
Q ss_pred HHhCCCHHHHHhHcCCCC
Q 025625 130 IIEGKTPEEIREIFHLPD 147 (250)
Q Consensus 130 ~IkGKT~eEIR~~FgI~~ 147 (250)
.+.|.|.+||.+.+||+.
T Consensus 124 ~~~g~s~~EIA~~Lgis~ 141 (182)
T PRK12540 124 GASGFSYEDAAAICGCAV 141 (182)
T ss_pred HHcCCCHHHHHHHHCCCH
Confidence 578999999999999884
No 34
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=29.18 E-value=2.1e+02 Score=22.30 Aligned_cols=58 Identities=12% Similarity=0.121 Sum_probs=38.5
Q ss_pred ccEEEE-eCCCCEEEecHHHHhHcHHHHHHHhhc--CCCCCCCcccccCCCCCHHHHHHHHHHH
Q 025625 16 SYIWLQ-TADGSIQQVEQEVAMFCPLICQEVIQK--GMGSSKNYAISLPQRVNPAMLSLILDYC 76 (250)
Q Consensus 16 ~~I~L~-SsDG~~f~V~~~aa~~S~~I~~ml~~~--~~~~~~~~~IpLp~~Vss~iL~kIIeyC 76 (250)
..+.+- ..+...|.|+...+.+ ++++.++... .+|-..+.+|.|| -+...++.|+...
T Consensus 39 G~~~VyVG~~~~Rfvvp~~~L~h-p~f~~LL~~aeeEfG~~~~G~l~iP--C~~~~Fe~~l~~l 99 (100)
T PF02519_consen 39 GHFAVYVGEERRRFVVPVSYLNH-PLFQELLEQAEEEFGFDQDGPLTIP--CDVVLFEHLLWLL 99 (100)
T ss_pred CeEEEEeCccceEEEechHHcCc-hhHHHHHHHHhhhcCcCCCCcEEee--CCHHHHHHHHHHh
Confidence 344444 4458999999887754 4666655433 2333346789998 7889999888754
No 35
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=29.04 E-value=54 Score=29.46 Aligned_cols=59 Identities=17% Similarity=0.237 Sum_probs=42.9
Q ss_pred cccccCCCCCHHHHHHHHHHHHhccCCCCCchhcchhhhhhhcCChHHHHhhhhhcccCCCchHHHHHHHHHHH
Q 025625 56 YAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALAR 129 (250)
Q Consensus 56 ~~IpLp~~Vss~iL~kIIeyC~~Hk~~~~s~~~i~~wD~eFl~id~~~L~eLi~AAnyL~I~~Lldl~c~~VA~ 129 (250)
...-+. .++...+-..|.|.+...-+ ++.+...|.+|..-|+.++++.|-+.|-+.+..
T Consensus 106 e~~~~d-Dad~Ea~~t~iRWIYTDEid--------------fk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a 164 (280)
T KOG4591|consen 106 EELDLD-DADFEAFHTAIRWIYTDEID--------------FKEDDEFLLELCELANRFQLELLKERCEKGLGA 164 (280)
T ss_pred hhhccc-ccCHHHHHHhheeeeccccc--------------cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334454 68888888888886554321 346777888888888888888888888777665
No 36
>PF12556 CobS_N: Cobaltochelatase CobS subunit N terminal
Probab=27.95 E-value=34 Score=22.10 Aligned_cols=12 Identities=33% Similarity=0.841 Sum_probs=10.3
Q ss_pred HHhHcCCCCCCC
Q 025625 139 IREIFHLPDDLT 150 (250)
Q Consensus 139 IR~~FgI~~D~T 150 (250)
+|+.|||..|++
T Consensus 14 vre~FGiDsDm~ 25 (36)
T PF12556_consen 14 VREVFGIDSDMK 25 (36)
T ss_pred HHHhcCCCcCCe
Confidence 689999999874
No 37
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=27.78 E-value=48 Score=27.73 Aligned_cols=37 Identities=35% Similarity=0.560 Sum_probs=28.5
Q ss_pred CCCHHHHHhHcCCCCCCChHhhhcccccccCchHHHHHHHHHHHHHHHHHHHhhh
Q 025625 133 GKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKEREKL 187 (250)
Q Consensus 133 GKT~eEIR~~FgI~~D~T~EEe~ei~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~ 187 (250)
|.||+|-|..||++.|+. |.-.-||.+|..|-+.-.|
T Consensus 98 gmTPd~YR~KW~LP~dYP------------------MvAPnYAa~RS~LAK~mGL 134 (148)
T COG4957 98 GLTPDEYRAKWGLPPDYP------------------MVAPNYAAARSQLAKAMGL 134 (148)
T ss_pred CCCHHHHHHhcCCCCCCC------------------ccchHHHHHHHHHHHHhCc
Confidence 889999999999998774 3345588888888765443
No 38
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []. This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.
Probab=26.85 E-value=47 Score=27.01 Aligned_cols=41 Identities=24% Similarity=0.421 Sum_probs=30.9
Q ss_pred hhhcccCCCchHHHHHHHHHHHHHhCC------------CHHHHHh-HcCCCCC
Q 025625 108 TSAADSLQLKPLVDLTSRALARIIEGK------------TPEEIRE-IFHLPDD 148 (250)
Q Consensus 108 i~AAnyL~I~~Lldl~c~~VA~~IkGK------------T~eEIR~-~FgI~~D 148 (250)
-.|+....++..+-.+|++||.+|+|. |+.-||. .||....
T Consensus 37 ~~~~k~F~VpDFVGd~Ck~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVFg~~~~ 90 (118)
T PF11978_consen 37 EDAAKLFSVPDFVGDACKAIASRIRGAVASVTFDDFHKNSARIIRQAVFGFDEN 90 (118)
T ss_dssp HHHHHTTSSTTHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHSTS---
T ss_pred hHHHHhcCCcchHHHHHHHHHHHHHHHHhcCcHHHHcccHHHHHHHHhcCCCCC
Confidence 378888999999999999999999973 2445555 7887653
No 39
>PRK11053 dihydropteridine reductase; Provisional
Probab=26.05 E-value=44 Score=28.75 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=25.5
Q ss_pred HHhhhhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCC
Q 025625 104 LCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPD 147 (250)
Q Consensus 104 L~eLi~AAnyL~I~~Lldl~c~~VA~~IkGKT~eEIR~~FgI~~ 147 (250)
+-.|+.||..||+..- .|.|-.++.+++.|||+.
T Consensus 147 ~~~lmLaA~~~Glgs~----------~i~g~~~~~v~~~l~ip~ 180 (217)
T PRK11053 147 LGNLLLGAAALGIDAT----------PIEGFDAAILDAEFGLRE 180 (217)
T ss_pred HHHHHHHHHHcCCCCC----------CcCCcCHHHHHHHhCCCC
Confidence 3467777777777643 456778999999999984
No 40
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=24.22 E-value=2.2e+02 Score=22.95 Aligned_cols=61 Identities=21% Similarity=0.386 Sum_probs=38.3
Q ss_pred ChHHHHhhhhhcc-----cCCCchHHHHHHHHHHHHHhC-CCHHHHHhHcCCCC-C----CChHhhhccccc
Q 025625 100 DTKRLCELTSAAD-----SLQLKPLVDLTSRALARIIEG-KTPEEIREIFHLPD-D----LTEEEKLEPLKN 160 (250)
Q Consensus 100 d~~~L~eLi~AAn-----yL~I~~Lldl~c~~VA~~IkG-KT~eEIR~~FgI~~-D----~T~EEe~ei~~~ 160 (250)
....+.+++...+ ++++..++.++.......-.. .+.+++++.|.+-+ | +|.+|...++..
T Consensus 42 t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~ 113 (151)
T KOG0027|consen 42 TEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTS 113 (151)
T ss_pred CHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHH
Confidence 3455556665555 577777777766655443333 36778888887744 2 777777776654
No 41
>KOG2609 consensus Cyclin D-interacting protein GCIP [Cell cycle control, cell division, chromosome partitioning; RNA processing and modification]
Probab=24.20 E-value=88 Score=28.13 Aligned_cols=46 Identities=24% Similarity=0.336 Sum_probs=33.0
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHhhhccccchhhhccccChHHHHhhhcCCC
Q 025625 161 TTDDPRIRLLNRLYAKKRKELKEREKLKNVESEEERVDERSVDDLLQFINGGE 213 (250)
Q Consensus 161 ~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 213 (250)
.+..|.-..+++|-...-+++|.|.+..-+..-. -|..++|||..|
T Consensus 155 ~t~k~~~~~idKl~~~L~~q~kkR~k~srRR~~n-------~d~~idfINerN 200 (228)
T KOG2609|consen 155 GTHKPDTEAIDKLVKDLEKQIKKRYKYSRRRMYN-------EDADIDFINERN 200 (228)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-------cccchhHHHHhH
Confidence 5778999999999888889999997654333222 134459999654
No 42
>PF11792 Baculo_LEF5_C: Baculoviridae late expression factor 5 C-terminal domain; InterPro: IPR021758 This C-terminal domain is likely to be a zinc-binding domain.
Probab=24.14 E-value=33 Score=23.01 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=12.0
Q ss_pred ccccChHHHHhhhc
Q 025625 197 VDERSVDDLLQFIN 210 (250)
Q Consensus 197 ~~~~~~~~~~~f~~ 210 (250)
.-.|+=||.+|||.
T Consensus 22 ~Q~RAGDE~VSfI~ 35 (43)
T PF11792_consen 22 KQLRAGDEAVSFIK 35 (43)
T ss_pred hhhcccchHHHHHH
Confidence 46799999999995
No 43
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=23.59 E-value=52 Score=35.49 Aligned_cols=7 Identities=14% Similarity=0.520 Sum_probs=4.8
Q ss_pred HHHHhhh
Q 025625 203 DDLLQFI 209 (250)
Q Consensus 203 ~~~~~f~ 209 (250)
++.++|+
T Consensus 882 k~~~~~~ 888 (1018)
T KOG2002|consen 882 KEILKLP 888 (1018)
T ss_pred HHHHhcc
Confidence 5667777
No 44
>PF15063 TC1: Thyroid cancer protein 1
Probab=23.40 E-value=56 Score=24.63 Aligned_cols=42 Identities=24% Similarity=0.420 Sum_probs=34.7
Q ss_pred HHHHHHHhCCCHHHHHhHcCCCCCCChHhhhcccccccCchH
Q 025625 125 RALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPR 166 (250)
Q Consensus 125 ~~VA~~IkGKT~eEIR~~FgI~~D~T~EEe~ei~~~~~~~p~ 166 (250)
+.+|+++.+-.-.+|+..|.-..|.-.||..++.-....||.
T Consensus 28 kasaNIFe~vn~~qlqrLF~~sGD~kAEeRA~iI~~~~~d~e 69 (79)
T PF15063_consen 28 KASANIFENVNLDQLQRLFQKSGDKKAEERARIIWECAQDPE 69 (79)
T ss_pred hhhhhhhhccCHHHHHHHHHHccchhHHHHHHHHHhhCCCHH
Confidence 457888889999999999999999999999888876666654
No 45
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.59 E-value=1.2e+02 Score=25.00 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=23.6
Q ss_pred hCCCHHHHHhHcCCCCCCChHhhhccccc
Q 025625 132 EGKTPEEIREIFHLPDDLTEEEKLEPLKN 160 (250)
Q Consensus 132 kGKT~eEIR~~FgI~~D~T~EEe~ei~~~ 160 (250)
-|.|.+|-+++++|.+++..||-+.....
T Consensus 54 ~~iTlqEa~qILnV~~~ln~eei~k~yeh 82 (132)
T KOG3442|consen 54 GKITLQEAQQILNVKEPLNREEIEKRYEH 82 (132)
T ss_pred ccccHHHHhhHhCCCCCCCHHHHHHHHHH
Confidence 45689999999999999998887775443
No 46
>PF05409 Peptidase_C30: Coronavirus endopeptidase C30; InterPro: IPR008740 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C30 (clan PA(C)). These peptidases are related to serine endopeptidases of family S1 and are restricted to RNA viruses, where they are involved in viral polyprotein processing during replication [, , ]. This entry represents the CoV M-pro which comprises three domains. Domains I and II are six-stranded antiparallel beta barrels and together resemble the architecture of chymotrypsin and of picornaviruses 3C proteinases. The substrate-binding site is located in a cleft between these two domains. The catalytic site is situated at the centre of the cleft. A long loop connects domain II to the C-terminal domain (domain III). This latter domain, a globular cluster of five helices, has been implicated in the proteolytic activity of M-pro. In the active site of M-pro, Cys and His form a catalytic dyad. In contrast to serine proteinases and other cysteine proteinases, which have a catalytic triad, there is no third catalytic residue present [, , , ]. ; GO: 0019082 viral protein processing; PDB: 2VJ1_B 2K7X_A 2Q6D_B 2Q6F_A 1P9U_E 1LVO_B 2AMP_B 1P9S_A 2ZU2_A 3D23_A ....
Probab=21.12 E-value=1.2e+02 Score=28.28 Aligned_cols=96 Identities=16% Similarity=0.239 Sum_probs=55.1
Q ss_pred ccccCCCCCHHHHHHHHHHHHhccCCCC---------Cchhcchhhhh--hhcCChHHHHhhhhhcccCCCchHHHHHHH
Q 025625 57 AISLPQRVNPAMLSLILDYCRFHQVPGS---------SNKERKSFDEK--FIRMDTKRLCELTSAADSLQLKPLVDLTSR 125 (250)
Q Consensus 57 ~IpLp~~Vss~iL~kIIeyC~~Hk~~~~---------s~~~i~~wD~e--Fl~id~~~L~eLi~AAnyL~I~~Lldl~c~ 125 (250)
...++ ..+.-.-.-|+.|++-|--.+. +-++..+|-.. |-.+..+..++.+.|..=..+..|+...-+
T Consensus 162 ~~Q~~-~~~~~~T~NVvA~LYAalln~~~w~l~~~~~svedFN~WA~~N~ft~~~~~~~~~~Laa~TgVsV~rlLaaI~~ 240 (293)
T PF05409_consen 162 VAQLE-GADQYITDNVVAWLYAALLNGCPWWLSSQRISVEDFNEWAMNNGFTSFSSDDAFDMLAAKTGVSVERLLAAIQR 240 (293)
T ss_dssp SSTTT-TS-SB-HHHHHHHHHHHHHTT--TTSSSS---HHHHHHHHHHTTB--SSHHHHHHHHHHHHT--HHHHHHHHHH
T ss_pred hhhhc-CccceeehhHHHHHHHHHHcCCCeeeccceecHHHHHHHHHhCCCcccchhhHHHHHHHHhCCcHHHHHHHHHH
Confidence 44554 3444555678899888764321 23455667544 445778889999999999999998876554
Q ss_pred HHHHHHhCCCHHHHHhHcCCCCCCChHhhhcc
Q 025625 126 ALARIIEGKTPEEIREIFHLPDDLTEEEKLEP 157 (250)
Q Consensus 126 ~VA~~IkGKT~eEIR~~FgI~~D~T~EEe~ei 157 (250)
+..-..|++ |--...+++||||++--..
T Consensus 241 -L~~g~~G~~---IlG~~~ledE~Tp~~V~~Q 268 (293)
T PF05409_consen 241 -LHKGFGGRT---ILGSCSLEDEFTPEMVYNQ 268 (293)
T ss_dssp -HHHTTTTT----BTTBSS--TSS-HHHHHHH
T ss_pred -HhcCCCCCc---ccccccccccCCHHHHhhh
Confidence 555445555 2233446778999976554
No 47
>COG3370 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.99 E-value=53 Score=26.44 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=29.6
Q ss_pred ChHHHHhhhhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChH
Q 025625 100 DTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEE 152 (250)
Q Consensus 100 d~~~L~eLi~AAnyL~I~~Lldl~c~~VA~~IkGKT~eEIR~~FgI~~D~T~E 152 (250)
++..++..+..+..|+|.++ +|+.+|+ .|||.++++-+
T Consensus 52 ~~~~~l~~l~~~~s~g~~p~---AC~~va~------------~~gi~d~l~~~ 89 (113)
T COG3370 52 NDGDSLKMLQELRSLGIKPL---ACKVVAE------------NLGIEDELIFL 89 (113)
T ss_pred cchHHHHHHHHHHHcCCcch---HHHHHHH------------hcCCcHHHHHh
Confidence 45566888889999998875 7999998 78888765443
No 48
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=20.83 E-value=2.5e+02 Score=21.74 Aligned_cols=54 Identities=20% Similarity=0.206 Sum_probs=31.5
Q ss_pred HHHHHHHHHHh--CCCHHHHHhHcCCCCCCChHhhhcccccccCchHHHHHHHHHH
Q 025625 122 LTSRALARIIE--GKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYA 175 (250)
Q Consensus 122 l~c~~VA~~Ik--GKT~eEIR~~FgI~~D~T~EEe~ei~~~~~~~p~~~~~~~l~~ 175 (250)
.++.-.|.++. +++|+++|+...-|.-.|.+=.......-......+.+..-+.
T Consensus 47 ~t~~G~a~ll~~~~~~~~~l~~~v~tPgG~T~~gl~~L~~~~~~~~~~~a~~aa~~ 102 (107)
T PF14748_consen 47 QTFIGAAKLLEESGRSPAELRDEVTTPGGTTIAGLEVLEKGGLRAAIMEALEAAVE 102 (107)
T ss_dssp HHHHHHHHHHHHCSS-HHHHHHHHS-TTSHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCHHHHhhhccCCCCcHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 34444456555 6799999999999998888755554443233334444444433
No 49
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=20.58 E-value=89 Score=18.88 Aligned_cols=21 Identities=29% Similarity=0.564 Sum_probs=16.7
Q ss_pred HHHHHHHHhCCCHHHHHhHcC
Q 025625 124 SRALARIIEGKTPEEIREIFH 144 (250)
Q Consensus 124 c~~VA~~IkGKT~eEIR~~Fg 144 (250)
-..||..+.++|+.+++..|.
T Consensus 22 w~~Ia~~~~~rs~~~~~~~~~ 42 (45)
T cd00167 22 WEKIAKELPGRTPKQCRERWR 42 (45)
T ss_pred HHHHHhHcCCCCHHHHHHHHH
Confidence 456888888899999988763
Done!