BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025626
(250 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D3K|A Chain A, Crystal Structure Of Human Edc3p
pdb|3D3K|B Chain B, Crystal Structure Of Human Edc3p
pdb|3D3K|C Chain C, Crystal Structure Of Human Edc3p
pdb|3D3K|D Chain D, Crystal Structure Of Human Edc3p
Length = 259
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 127 PEEFARTFCNDMGIEDPEVGPAVAFAIREQLYEIAIQSVASAREIKISKKGRRGAEHAIS 186
P ++ FC D G+ V P++++ + ++L +A + E ++ G ++ A++
Sbjct: 15 PHNVSKEFCTDSGL----VVPSISYELHKKLLSVA-EKHGLTLERRLEMTGVCASQMALT 69
Query: 187 SKGGGNALD 195
GG N L+
Sbjct: 70 LLGGPNRLN 78
>pdb|3D3J|A Chain A, Crystal Structure Of Human Edc3p
Length = 306
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 127 PEEFARTFCNDMGIEDPEVGPAVAFAIREQLYEIAIQSVASAREIKISKKGRRGAEHAIS 186
P ++ FC D G+ V P++++ + ++L +A + E ++ G ++ A++
Sbjct: 62 PHNVSKEFCTDSGL----VVPSISYELHKKLLSVA-EKHGLTLERRLEMTGVCASQMALT 116
Query: 187 SKGGGNALD 195
GG N L+
Sbjct: 117 LLGGPNRLN 125
>pdb|1JMU|B Chain B, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
pdb|1JMU|D Chain D, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
pdb|1JMU|F Chain F, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
Length = 666
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 16 RMPTADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQ 75
R+ D + P+R ++ G+ YK+ +W+P+ +VF K+P + T +Q
Sbjct: 324 RVVNLDQIAPMRFVLDLGGKSYKET-SWDPNGKKVGFIVFQS------KIPFELWTAASQ 376
Query: 76 SIQTQLTEFRSYEGQD-MYTAEKIV 99
Q + + +D +TA+ I+
Sbjct: 377 IGQATVVNYVQLYAEDSSFTAQSII 401
>pdb|2CSE|A Chain A, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|B Chain B, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|C Chain C, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|P Chain P, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|Q Chain Q, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|R Chain R, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|J Chain J, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|K Chain K, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|L Chain L, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|T Chain T, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
Length = 708
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 16 RMPTADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQ 75
R+ D + P+R ++ G+ YK+ +W+P+ +VF K+P + T +Q
Sbjct: 366 RVVNLDQIAPMRFVLDLGGKSYKET-SWDPNGKKVGFIVFQS------KIPFELWTAASQ 418
Query: 76 SIQTQLTEFRSYEGQD-MYTAEKIV 99
Q + + +D +TA+ I+
Sbjct: 419 IGQATVVNYVQLYAEDSSFTAQSII 443
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,369,683
Number of Sequences: 62578
Number of extensions: 293378
Number of successful extensions: 630
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 630
Number of HSP's gapped (non-prelim): 13
length of query: 250
length of database: 14,973,337
effective HSP length: 96
effective length of query: 154
effective length of database: 8,965,849
effective search space: 1380740746
effective search space used: 1380740746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)